Query psy11867
Match_columns 399
No_of_seqs 304 out of 2384
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 20:58:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fmp_B ATP-dependent RNA helic 100.0 1.3E-55 4.4E-60 440.4 23.6 387 3-399 2-388 (479)
2 3fht_A ATP-dependent RNA helic 100.0 1.1E-49 3.7E-54 389.4 33.2 319 81-399 3-321 (412)
3 2db3_A ATP-dependent RNA helic 100.0 2.8E-49 9.6E-54 389.6 33.1 302 88-399 44-355 (434)
4 3fmo_B ATP-dependent RNA helic 100.0 6.2E-50 2.1E-54 374.7 24.4 298 3-310 2-299 (300)
5 2j0s_A ATP-dependent RNA helic 100.0 1.9E-46 6.6E-51 366.6 30.9 294 101-399 35-331 (410)
6 2i4i_A ATP-dependent RNA helic 100.0 2.6E-45 8.9E-50 359.1 32.9 292 102-399 14-331 (417)
7 3pey_A ATP-dependent RNA helic 100.0 8.7E-45 3E-49 352.3 34.2 295 102-399 4-298 (395)
8 3eiq_A Eukaryotic initiation f 100.0 1.6E-44 5.5E-49 353.1 30.5 293 102-399 39-335 (414)
9 1xti_A Probable ATP-dependent 100.0 9.7E-44 3.3E-48 344.9 32.2 293 103-399 8-305 (391)
10 1s2m_A Putative ATP-dependent 100.0 3E-43 1E-47 342.8 31.3 291 102-399 20-313 (400)
11 1fuu_A Yeast initiation factor 100.0 3.5E-44 1.2E-48 348.2 20.2 293 102-399 20-314 (394)
12 3sqw_A ATP-dependent RNA helic 100.0 1.9E-42 6.4E-47 353.0 26.1 289 110-399 28-346 (579)
13 3i5x_A ATP-dependent RNA helic 100.0 4.1E-42 1.4E-46 349.6 26.5 297 102-399 70-397 (563)
14 1hv8_A Putative ATP-dependent 100.0 5.3E-41 1.8E-45 322.5 32.5 286 103-399 6-293 (367)
15 3fho_A ATP-dependent RNA helic 100.0 1.1E-41 3.7E-46 341.8 18.2 294 103-399 119-412 (508)
16 2z0m_A 337AA long hypothetical 100.0 2.8E-38 9.6E-43 300.1 29.9 269 110-399 1-271 (337)
17 3fe2_A Probable ATP-dependent 100.0 1.4E-38 4.7E-43 289.0 21.0 218 86-311 15-240 (242)
18 2v1x_A ATP-dependent DNA helic 100.0 1.4E-37 4.8E-42 315.6 27.4 279 106-399 24-322 (591)
19 3ber_A Probable ATP-dependent 100.0 1.9E-37 6.5E-42 282.6 20.6 205 101-309 41-248 (249)
20 2oxc_A Probable ATP-dependent 100.0 4.1E-37 1.4E-41 277.2 22.1 205 102-309 23-229 (230)
21 1vec_A ATP-dependent RNA helic 100.0 9.6E-37 3.3E-41 269.8 23.2 200 103-306 3-205 (206)
22 1wrb_A DJVLGB; RNA helicase, D 100.0 1.9E-37 6.6E-42 283.3 18.5 217 101-322 21-253 (253)
23 3iuy_A Probable ATP-dependent 100.0 7.2E-37 2.5E-41 275.1 21.7 203 100-308 16-228 (228)
24 1q0u_A Bstdead; DEAD protein, 100.0 8.3E-37 2.8E-41 273.0 21.7 205 102-310 3-213 (219)
25 3bor_A Human initiation factor 100.0 1E-36 3.4E-41 275.9 20.8 203 102-309 29-235 (237)
26 1oyw_A RECQ helicase, ATP-depe 100.0 9.3E-37 3.2E-41 306.3 22.5 276 103-399 2-291 (523)
27 1t6n_A Probable ATP-dependent 100.0 1.4E-36 4.9E-41 271.6 21.1 203 102-307 13-219 (220)
28 3oiy_A Reverse gyrase helicase 100.0 3.1E-37 1E-41 302.0 18.2 261 113-399 9-302 (414)
29 2pl3_A Probable ATP-dependent 100.0 1.9E-36 6.7E-41 273.7 21.9 207 100-310 22-234 (236)
30 3dkp_A Probable ATP-dependent 100.0 1.4E-36 4.9E-41 276.2 20.7 221 85-311 10-243 (245)
31 1qde_A EIF4A, translation init 100.0 5.2E-36 1.8E-40 268.7 23.2 206 102-312 13-220 (224)
32 2zj8_A DNA helicase, putative 100.0 1.9E-36 6.6E-41 316.0 20.5 280 104-399 2-325 (720)
33 2va8_A SSO2462, SKI2-type heli 100.0 1.6E-35 5.6E-40 309.0 26.6 281 103-399 8-343 (715)
34 3ly5_A ATP-dependent RNA helic 100.0 4.2E-36 1.4E-40 275.8 19.3 198 103-304 52-258 (262)
35 3l9o_A ATP-dependent RNA helic 100.0 3.5E-36 1.2E-40 323.7 19.4 278 104-399 163-535 (1108)
36 2gxq_A Heat resistant RNA depe 100.0 3.9E-35 1.3E-39 259.6 21.7 199 104-309 2-206 (207)
37 2p6r_A Afuhel308 helicase; pro 100.0 2.3E-36 7.9E-41 314.6 14.9 279 104-399 2-327 (702)
38 4f92_B U5 small nuclear ribonu 100.0 1.1E-34 3.7E-39 322.3 24.9 298 96-399 897-1244(1724)
39 2ykg_A Probable ATP-dependent 100.0 8.7E-35 3E-39 302.8 14.7 172 115-289 3-184 (696)
40 4ddu_A Reverse gyrase; topoiso 100.0 5.6E-34 1.9E-38 306.5 20.9 253 121-399 75-359 (1104)
41 4f92_B U5 small nuclear ribonu 100.0 2.3E-33 7.9E-38 311.7 23.7 273 121-399 75-409 (1724)
42 4a2p_A RIG-I, retinoic acid in 100.0 1.9E-33 6.4E-38 284.9 20.9 166 121-289 3-177 (556)
43 2xgj_A ATP-dependent RNA helic 100.0 9.1E-33 3.1E-37 294.8 26.3 261 120-399 82-437 (1010)
44 3tbk_A RIG-I helicase domain; 100.0 6.5E-33 2.2E-37 280.7 22.9 164 124-290 3-176 (555)
45 1gku_B Reverse gyrase, TOP-RG; 100.0 2.5E-34 8.6E-39 309.1 12.7 252 120-399 53-324 (1054)
46 1tf5_A Preprotein translocase 100.0 1.3E-33 4.6E-38 288.1 15.5 266 120-394 79-482 (844)
47 4a2q_A RIG-I, retinoic acid in 100.0 7E-33 2.4E-37 292.0 20.3 167 120-289 243-418 (797)
48 2fsf_A Preprotein translocase 100.0 1E-32 3.6E-37 280.9 15.2 265 121-394 71-491 (853)
49 4a2w_A RIG-I, retinoic acid in 100.0 6.9E-32 2.3E-36 287.8 20.9 166 121-289 244-418 (936)
50 4a4z_A Antiviral helicase SKI2 100.0 1.5E-31 5.2E-36 285.3 22.3 263 121-399 36-430 (997)
51 1nkt_A Preprotein translocase 100.0 7.6E-32 2.6E-36 274.9 16.5 266 120-394 107-510 (922)
52 1wp9_A ATP-dependent RNA helic 100.0 1.5E-30 5.2E-35 258.2 22.6 267 125-399 9-424 (494)
53 2eyq_A TRCF, transcription-rep 100.0 6.2E-30 2.1E-34 276.7 27.8 269 109-399 587-869 (1151)
54 4gl2_A Interferon-induced heli 100.0 7.1E-32 2.4E-36 281.0 10.6 163 124-290 6-193 (699)
55 2oca_A DAR protein, ATP-depend 100.0 1.7E-31 5.7E-36 268.2 11.6 262 123-399 111-402 (510)
56 1gm5_A RECG; helicase, replica 100.0 9.2E-31 3.2E-35 271.4 14.5 265 112-399 356-644 (780)
57 2xau_A PRE-mRNA-splicing facto 100.0 2.8E-29 9.7E-34 261.6 21.2 282 102-399 71-374 (773)
58 2whx_A Serine protease/ntpase/ 100.0 1.9E-31 6.5E-36 271.6 2.1 251 108-399 155-406 (618)
59 2jlq_A Serine protease subunit 100.0 3.5E-30 1.2E-34 254.3 9.3 237 122-399 1-239 (451)
60 2wv9_A Flavivirin protease NS2 100.0 9.8E-31 3.4E-35 268.0 -3.1 236 117-399 202-461 (673)
61 2fwr_A DNA repair protein RAD2 100.0 1.7E-28 6E-33 243.9 12.1 242 124-399 92-399 (472)
62 3o8b_A HCV NS3 protease/helica 99.9 3.1E-28 1E-32 246.5 12.3 225 126-399 218-444 (666)
63 2v6i_A RNA helicase; membrane, 99.9 3E-27 1E-31 231.9 12.9 220 142-399 2-222 (431)
64 1yks_A Genome polyprotein [con 99.9 5.2E-29 1.8E-33 244.9 -1.1 213 142-399 8-228 (440)
65 3h1t_A Type I site-specific re 99.9 1.5E-26 5E-31 236.3 14.2 258 124-396 177-498 (590)
66 2z83_A Helicase/nucleoside tri 99.9 4.2E-27 1.4E-31 232.6 6.6 222 135-399 15-241 (459)
67 3rc3_A ATP-dependent RNA helic 99.9 5.8E-25 2E-29 224.8 11.8 219 142-399 155-377 (677)
68 3llm_A ATP-dependent RNA helic 99.9 4E-24 1.4E-28 192.7 14.0 181 112-304 48-232 (235)
69 3dmq_A RNA polymerase-associat 99.9 2.5E-24 8.5E-29 230.0 14.5 270 124-399 152-561 (968)
70 3b6e_A Interferon-induced heli 99.9 2.3E-24 7.9E-29 191.2 9.1 163 121-287 29-216 (216)
71 1z63_A Helicase of the SNF2/RA 99.9 8.3E-23 2.8E-27 204.4 20.9 259 124-397 36-396 (500)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 8.1E-24 2.8E-28 225.0 14.0 152 125-289 271-439 (1038)
73 2ipc_A Preprotein translocase 99.9 7E-22 2.4E-26 201.3 23.0 130 121-259 76-215 (997)
74 1rif_A DAR protein, DNA helica 99.9 4.5E-23 1.5E-27 191.0 9.5 155 124-292 112-266 (282)
75 3mwy_W Chromo domain-containin 99.8 3.5E-20 1.2E-24 195.0 19.2 261 125-396 236-624 (800)
76 1z3i_X Similar to RAD54-like; 99.8 4.7E-19 1.6E-23 182.0 24.3 262 125-396 55-468 (644)
77 3jux_A Protein translocase sub 99.8 1.8E-18 6.2E-23 173.4 23.2 262 121-394 72-524 (822)
78 2fz4_A DNA repair protein RAD2 99.8 4.9E-19 1.7E-23 159.4 12.8 138 124-290 92-230 (237)
79 1c4o_A DNA nucleotide excision 99.7 8.4E-16 2.9E-20 157.9 22.5 114 277-399 379-494 (664)
80 3crv_A XPD/RAD3 related DNA he 99.7 6.6E-17 2.3E-21 163.2 8.7 129 125-260 3-187 (551)
81 2d7d_A Uvrabc system protein B 99.6 1E-14 3.6E-19 149.7 21.3 114 277-399 385-500 (661)
82 2vl7_A XPD; helicase, unknown 99.6 2E-15 6.7E-20 151.9 8.0 126 121-259 4-188 (540)
83 2rb4_A ATP-dependent RNA helic 99.4 3.8E-12 1.3E-16 108.8 11.3 87 313-399 3-89 (175)
84 2p6n_A ATP-dependent RNA helic 99.3 2.6E-12 8.9E-17 111.3 9.6 101 297-399 9-109 (191)
85 4a15_A XPD helicase, ATP-depen 99.3 6.7E-13 2.3E-17 135.2 5.5 72 124-199 2-77 (620)
86 1t5i_A C_terminal domain of A 99.3 1.3E-11 4.4E-16 105.1 10.4 85 314-399 2-86 (172)
87 1fuk_A Eukaryotic initiation f 99.3 1.5E-11 5.1E-16 104.0 10.8 84 316-399 2-85 (165)
88 2hjv_A ATP-dependent RNA helic 99.3 1.5E-11 5.2E-16 103.7 10.1 86 313-399 5-90 (163)
89 2jgn_A DBX, DDX3, ATP-dependen 99.2 3.4E-11 1.2E-15 103.7 8.7 89 310-399 12-101 (185)
90 2yjt_D ATP-dependent RNA helic 98.6 2E-11 6.7E-16 103.8 0.0 84 316-399 2-85 (170)
91 3eaq_A Heat resistant RNA depe 99.0 6.5E-10 2.2E-14 97.9 8.5 81 318-399 6-86 (212)
92 3i32_A Heat resistant RNA depe 99.0 6.6E-10 2.2E-14 102.9 8.5 82 317-399 2-83 (300)
93 1w36_D RECD, exodeoxyribonucle 99.0 7.8E-10 2.7E-14 112.5 8.9 145 127-287 151-298 (608)
94 3upu_A ATP-dependent DNA helic 98.2 4.6E-06 1.6E-10 81.9 10.5 140 120-285 20-162 (459)
95 1z5z_A Helicase of the SNF2/RA 98.1 3.1E-06 1E-10 77.0 6.5 70 328-397 94-167 (271)
96 3e1s_A Exodeoxyribonuclease V, 98.1 7.8E-06 2.7E-10 82.3 10.0 123 125-286 189-314 (574)
97 3lfu_A DNA helicase II; SF1 he 98.1 0.00019 6.5E-09 73.4 20.3 70 124-197 8-78 (647)
98 4b3f_X DNA-binding protein smu 98.0 1.3E-05 4.6E-10 82.0 9.0 69 125-197 189-257 (646)
99 2gk6_A Regulator of nonsense t 98.0 2.7E-05 9.1E-10 79.4 11.0 71 123-197 178-248 (624)
100 2xzl_A ATP-dependent helicase 97.9 3.2E-05 1.1E-09 80.8 10.4 71 123-197 358-428 (802)
101 2wjy_A Regulator of nonsense t 97.9 6.4E-05 2.2E-09 78.5 12.2 71 123-197 354-424 (800)
102 2o0j_A Terminase, DNA packagin 97.4 0.00055 1.9E-08 65.0 9.8 74 125-201 163-236 (385)
103 3cpe_A Terminase, DNA packagin 97.3 0.0012 4E-08 66.8 10.8 74 125-201 163-236 (592)
104 3vkw_A Replicase large subunit 97.1 0.0022 7.7E-08 61.7 9.9 85 143-258 162-246 (446)
105 3ec2_A DNA replication protein 96.6 0.0023 7.8E-08 53.8 5.2 19 142-160 38-56 (180)
106 3te6_A Regulatory protein SIR3 96.4 0.013 4.5E-07 54.0 9.7 26 135-160 38-63 (318)
107 2orw_A Thymidine kinase; TMTK, 96.4 0.0018 6.1E-08 55.0 3.5 39 142-183 3-41 (184)
108 2chg_A Replication factor C sm 96.3 0.024 8E-07 48.6 10.2 39 245-285 101-139 (226)
109 3bos_A Putative DNA replicatio 96.3 0.0039 1.3E-07 54.6 4.9 18 142-159 52-69 (242)
110 1l8q_A Chromosomal replication 96.2 0.0091 3.1E-07 55.2 7.4 19 142-160 37-55 (324)
111 2b8t_A Thymidine kinase; deoxy 96.1 0.0027 9.2E-08 55.6 3.1 91 141-258 11-101 (223)
112 1uaa_A REP helicase, protein ( 96.1 0.0046 1.6E-07 63.5 5.4 70 125-198 2-72 (673)
113 2zpa_A Uncharacterized protein 96.1 0.0091 3.1E-07 60.4 7.3 115 125-289 175-289 (671)
114 3u4q_A ATP-dependent helicase/ 96.1 0.0072 2.5E-07 66.3 7.0 67 125-195 10-79 (1232)
115 2j9r_A Thymidine kinase; TK1, 96.1 0.0085 2.9E-07 51.8 6.0 40 142-184 28-67 (214)
116 1pjr_A PCRA; DNA repair, DNA r 96.0 0.0088 3E-07 61.9 6.9 70 124-197 10-80 (724)
117 1xx6_A Thymidine kinase; NESG, 96.0 0.013 4.5E-07 49.9 6.5 39 142-183 8-46 (191)
118 1d2n_A N-ethylmaleimide-sensit 95.9 0.051 1.8E-06 48.7 10.7 20 141-160 63-82 (272)
119 1a5t_A Delta prime, HOLB; zinc 95.8 0.012 4.1E-07 54.8 6.3 36 126-161 3-43 (334)
120 2kjq_A DNAA-related protein; s 95.8 0.0052 1.8E-07 50.1 3.1 18 142-159 36-53 (149)
121 2qp9_X Vacuolar protein sortin 95.6 0.047 1.6E-06 51.2 9.5 52 103-160 48-102 (355)
122 3eie_A Vacuolar protein sortin 95.6 0.043 1.5E-06 50.7 8.9 52 103-160 15-69 (322)
123 3n70_A Transport activator; si 95.6 0.014 4.6E-07 47.2 4.9 19 142-160 24-42 (145)
124 3syl_A Protein CBBX; photosynt 95.4 0.012 4.2E-07 53.8 4.7 19 142-160 67-85 (309)
125 1w4r_A Thymidine kinase; type 95.4 0.017 5.9E-07 49.0 5.1 45 135-182 13-57 (195)
126 2orv_A Thymidine kinase; TP4A 95.4 0.033 1.1E-06 48.6 6.8 39 142-183 19-57 (234)
127 2p65_A Hypothetical protein PF 95.1 0.078 2.7E-06 43.9 8.5 19 142-160 43-61 (187)
128 1xwi_A SKD1 protein; VPS4B, AA 95.1 0.31 1E-05 44.9 13.2 52 103-160 9-63 (322)
129 3co5_A Putative two-component 95.0 0.029 1E-06 45.1 5.0 18 142-159 27-44 (143)
130 3cf0_A Transitional endoplasmi 94.9 0.11 3.7E-06 47.4 9.4 53 103-160 12-67 (301)
131 2z4s_A Chromosomal replication 94.9 0.053 1.8E-06 52.5 7.6 19 142-160 130-148 (440)
132 2w58_A DNAI, primosome compone 94.8 0.079 2.7E-06 45.0 7.7 18 143-160 55-72 (202)
133 3h4m_A Proteasome-activating n 94.7 0.13 4.3E-06 46.3 9.2 55 103-159 14-68 (285)
134 3kl4_A SRP54, signal recogniti 94.7 0.074 2.5E-06 51.2 7.8 134 142-299 97-234 (433)
135 3e2i_A Thymidine kinase; Zn-bi 94.6 0.032 1.1E-06 48.2 4.6 98 142-272 28-125 (219)
136 2qby_B CDC6 homolog 3, cell di 94.6 0.082 2.8E-06 49.7 8.1 19 142-160 45-63 (384)
137 3u61_B DNA polymerase accessor 94.5 0.063 2.2E-06 49.4 6.8 39 245-285 104-143 (324)
138 2dr3_A UPF0273 protein PH0284; 94.4 0.042 1.4E-06 48.2 5.0 51 142-196 23-73 (247)
139 2v1u_A Cell division control p 94.3 0.098 3.3E-06 49.1 7.8 20 141-160 43-62 (387)
140 1sxj_E Activator 1 40 kDa subu 94.1 0.32 1.1E-05 45.1 10.9 41 245-287 133-173 (354)
141 1iqp_A RFCS; clamp loader, ext 94.0 0.098 3.4E-06 47.8 7.0 39 245-285 109-147 (327)
142 2qgz_A Helicase loader, putati 93.9 0.049 1.7E-06 50.0 4.7 19 142-160 152-170 (308)
143 2qby_A CDC6 homolog 1, cell di 93.7 0.27 9.4E-06 45.8 9.6 20 141-160 44-63 (386)
144 2w0m_A SSO2452; RECA, SSPF, un 93.6 0.15 5E-06 44.1 7.0 52 142-197 23-74 (235)
145 2gno_A DNA polymerase III, gam 93.4 0.16 5.3E-06 46.6 7.1 44 245-291 81-124 (305)
146 1sxj_D Activator 1 41 kDa subu 93.4 0.13 4.5E-06 47.6 6.7 39 245-285 132-170 (353)
147 2qz4_A Paraplegin; AAA+, SPG7, 93.3 0.47 1.6E-05 41.7 10.1 18 142-159 39-56 (262)
148 1fnn_A CDC6P, cell division co 93.3 0.42 1.4E-05 44.7 10.1 35 144-180 46-80 (389)
149 1njg_A DNA polymerase III subu 93.1 0.5 1.7E-05 40.5 9.7 17 143-159 46-62 (250)
150 1sxj_B Activator 1 37 kDa subu 92.9 0.091 3.1E-06 48.0 4.8 38 246-285 107-144 (323)
151 3dm5_A SRP54, signal recogniti 92.9 0.24 8.1E-06 47.7 7.7 42 142-186 100-143 (443)
152 2chq_A Replication factor C sm 92.8 0.11 3.7E-06 47.4 5.1 42 103-159 14-55 (319)
153 4a15_A XPD helicase, ATP-depen 92.1 0.28 9.6E-06 49.6 7.5 113 277-398 374-498 (620)
154 1g5t_A COB(I)alamin adenosyltr 92.1 0.41 1.4E-05 40.5 7.4 141 142-297 28-172 (196)
155 3hu3_A Transitional endoplasmi 92.0 0.45 1.5E-05 46.5 8.6 20 141-160 237-256 (489)
156 1sxj_C Activator 1 40 kDa subu 91.6 0.31 1.1E-05 45.1 6.7 39 245-285 109-147 (340)
157 3oiy_A Reverse gyrase helicase 91.5 0.33 1.1E-05 46.2 6.9 57 343-399 63-122 (414)
158 3pfi_A Holliday junction ATP-d 91.5 0.13 4.6E-06 47.4 4.0 19 142-160 55-73 (338)
159 3cmu_A Protein RECA, recombina 90.8 0.22 7.4E-06 56.6 5.4 90 141-259 1426-1518(2050)
160 3pvs_A Replication-associated 90.7 0.2 6.9E-06 48.5 4.5 19 142-160 50-68 (447)
161 1r6b_X CLPA protein; AAA+, N-t 90.5 0.37 1.3E-05 49.9 6.6 26 134-159 199-224 (758)
162 2rb4_A ATP-dependent RNA helic 90.4 1.4 4.9E-05 36.1 9.1 71 172-254 33-110 (175)
163 2l8b_A Protein TRAI, DNA helic 90.3 0.094 3.2E-06 43.8 1.5 61 126-188 35-95 (189)
164 1n0w_A DNA repair protein RAD5 90.3 0.61 2.1E-05 40.4 7.0 40 142-181 24-66 (243)
165 2zts_A Putative uncharacterize 90.0 0.32 1.1E-05 42.4 4.9 53 141-196 29-81 (251)
166 2ehv_A Hypothetical protein PH 89.0 0.3 1E-05 42.6 3.9 47 245-291 134-184 (251)
167 1w5s_A Origin recognition comp 89.0 0.49 1.7E-05 44.7 5.7 19 142-160 50-70 (412)
168 1gm5_A RECG; helicase, replica 88.8 0.55 1.9E-05 48.7 6.3 56 344-399 417-476 (780)
169 2hjv_A ATP-dependent RNA helic 88.6 1.2 4.1E-05 36.2 7.2 70 173-254 35-111 (163)
170 1jr3_A DNA polymerase III subu 88.4 0.73 2.5E-05 42.8 6.4 18 143-160 39-56 (373)
171 3hjh_A Transcription-repair-co 88.1 0.51 1.8E-05 46.0 5.2 51 142-198 14-64 (483)
172 4b4t_M 26S protease regulatory 87.6 0.24 8.2E-06 47.6 2.5 53 102-159 177-232 (434)
173 1qvr_A CLPB protein; coiled co 87.6 0.37 1.3E-05 50.7 4.2 27 134-160 183-209 (854)
174 1fuk_A Eukaryotic initiation f 87.5 1.9 6.5E-05 35.0 7.7 71 172-254 29-106 (165)
175 1oyw_A RECQ helicase, ATP-depe 87.1 1 3.4E-05 44.5 6.7 56 344-399 65-120 (523)
176 4ddu_A Reverse gyrase; topoiso 87.1 0.81 2.8E-05 49.5 6.5 57 343-399 120-179 (1104)
177 3io5_A Recombination and repai 86.9 0.5 1.7E-05 43.3 4.1 92 142-259 29-124 (333)
178 3eaq_A Heat resistant RNA depe 86.6 1.7 5.7E-05 37.1 7.1 68 173-252 31-105 (212)
179 2p6n_A ATP-dependent RNA helic 86.6 5.1 0.00017 33.4 10.1 68 173-252 54-128 (191)
180 1t5i_A C_terminal domain of A 86.3 2 6.8E-05 35.2 7.3 71 172-254 30-107 (172)
181 3gk5_A Uncharacterized rhodane 86.0 1 3.5E-05 33.9 4.8 37 344-380 55-91 (108)
182 3k1j_A LON protease, ATP-depen 85.8 2.4 8.2E-05 42.6 8.8 19 142-160 60-78 (604)
183 1p9r_A General secretion pathw 85.6 0.82 2.8E-05 43.7 5.0 39 130-169 155-193 (418)
184 1jbk_A CLPB protein; beta barr 84.8 0.44 1.5E-05 39.2 2.4 18 142-159 43-60 (195)
185 2v1x_A ATP-dependent DNA helic 84.6 1.8 6E-05 43.4 7.1 56 344-399 84-141 (591)
186 3pxi_A Negative regulator of g 84.5 1.7 5.9E-05 44.9 7.3 17 144-160 523-539 (758)
187 1e9r_A Conjugal transfer prote 84.4 0.49 1.7E-05 45.4 2.9 43 142-187 53-95 (437)
188 3e70_C DPA, signal recognition 84.2 1.6 5.5E-05 40.1 6.2 54 246-299 211-264 (328)
189 1xp8_A RECA protein, recombina 84.1 0.94 3.2E-05 42.5 4.6 38 142-182 74-111 (366)
190 3cmu_A Protein RECA, recombina 84.0 1.2 4.1E-05 50.7 6.1 54 141-200 1080-1133(2050)
191 2fna_A Conserved hypothetical 83.9 8.3 0.00028 35.0 11.2 17 143-159 31-47 (357)
192 2jgn_A DBX, DDX3, ATP-dependen 83.7 2.6 8.8E-05 35.0 6.8 84 153-252 30-120 (185)
193 3foj_A Uncharacterized protein 83.7 0.88 3E-05 33.6 3.5 35 345-379 57-91 (100)
194 3hr8_A Protein RECA; alpha and 83.5 0.88 3E-05 42.5 4.1 41 142-185 61-101 (356)
195 1wv9_A Rhodanese homolog TT165 82.9 1 3.5E-05 32.8 3.5 35 345-379 54-88 (94)
196 4b4t_J 26S protease regulatory 82.9 0.46 1.6E-05 45.1 1.9 52 103-159 145-199 (405)
197 2l82_A Designed protein OR32; 82.7 5.8 0.0002 29.5 7.4 50 347-396 5-54 (162)
198 3eme_A Rhodanese-like domain p 82.6 0.87 3E-05 33.8 3.1 35 345-379 57-91 (103)
199 3i5x_A ATP-dependent RNA helic 82.5 4.6 0.00016 39.8 9.2 76 171-255 337-419 (563)
200 2oap_1 GSPE-2, type II secreti 81.7 0.64 2.2E-05 45.7 2.5 40 116-158 237-276 (511)
201 4b4t_L 26S protease subunit RP 81.4 0.47 1.6E-05 45.6 1.4 52 103-159 178-232 (437)
202 3b9p_A CG5977-PA, isoform A; A 81.2 1.2 4E-05 40.0 4.0 53 103-159 18-71 (297)
203 2zan_A Vacuolar protein sortin 80.7 1.1 3.7E-05 43.3 3.7 52 103-160 131-185 (444)
204 1t6n_A Probable ATP-dependent 80.3 4.5 0.00015 34.2 7.3 51 345-398 83-138 (220)
205 4b4t_H 26S protease regulatory 79.7 0.57 1.9E-05 45.2 1.3 52 103-159 206-260 (467)
206 3sqw_A ATP-dependent RNA helic 79.6 6.6 0.00023 38.9 9.2 76 171-255 286-368 (579)
207 4b4t_I 26S protease regulatory 79.5 0.83 2.8E-05 43.6 2.4 52 103-159 179-233 (437)
208 4b4t_K 26S protease regulatory 79.2 0.66 2.2E-05 44.5 1.6 52 103-159 169-223 (428)
209 1ex7_A Guanylate kinase; subst 78.8 0.5 1.7E-05 39.7 0.6 16 143-158 2-17 (186)
210 3iwh_A Rhodanese-like domain p 78.6 1.5 5E-05 32.8 3.1 35 345-379 57-91 (103)
211 3pey_A ATP-dependent RNA helic 78.4 33 0.0011 31.3 13.3 75 171-257 241-322 (395)
212 3hix_A ALR3790 protein; rhodan 78.2 1.8 6.1E-05 32.3 3.5 37 344-380 52-89 (106)
213 2x8a_A Nuclear valosin-contain 78.0 0.53 1.8E-05 42.2 0.5 55 103-159 7-61 (274)
214 3flh_A Uncharacterized protein 77.7 2.2 7.4E-05 32.9 4.0 37 344-380 71-109 (124)
215 2i4i_A ATP-dependent RNA helic 77.7 7.1 0.00024 36.5 8.4 69 172-252 275-350 (417)
216 1kgd_A CASK, peripheral plasma 77.6 0.73 2.5E-05 38.2 1.2 18 142-159 5-22 (180)
217 2bjv_A PSP operon transcriptio 77.5 0.94 3.2E-05 40.0 2.1 18 142-159 29-46 (265)
218 3crv_A XPD/RAD3 related DNA he 77.5 22 0.00077 34.9 12.3 43 343-391 392-434 (551)
219 3g5j_A Putative ATP/GTP bindin 77.2 1.6 5.6E-05 33.8 3.2 38 345-382 90-128 (134)
220 3hws_A ATP-dependent CLP prote 77.2 0.76 2.6E-05 42.9 1.4 19 142-160 51-69 (363)
221 2oxc_A Probable ATP-dependent 77.1 4.5 0.00015 34.6 6.3 44 343-386 91-139 (230)
222 1qhx_A CPT, protein (chloramph 77.1 0.77 2.6E-05 37.7 1.2 19 142-160 3-21 (178)
223 1ixz_A ATP-dependent metallopr 77.0 0.91 3.1E-05 39.8 1.8 52 103-159 13-66 (254)
224 2jtq_A Phage shock protein E; 76.9 6.9 0.00023 27.5 6.3 36 343-379 40-76 (85)
225 1w36_B RECB, exodeoxyribonucle 76.8 2.9 0.0001 45.5 6.0 53 143-195 17-78 (1180)
226 3vaa_A Shikimate kinase, SK; s 76.6 0.79 2.7E-05 38.6 1.2 19 142-160 25-43 (199)
227 2z43_A DNA repair and recombin 76.4 3.1 0.00011 38.0 5.4 56 141-196 106-165 (324)
228 3trf_A Shikimate kinase, SK; a 76.1 0.79 2.7E-05 37.9 1.1 19 142-160 5-23 (185)
229 2ius_A DNA translocase FTSK; n 76.0 2.3 7.7E-05 41.7 4.4 26 142-167 167-192 (512)
230 3ber_A Probable ATP-dependent 75.8 8 0.00027 33.6 7.7 44 343-386 110-157 (249)
231 2i1q_A DNA repair and recombin 75.6 2.2 7.7E-05 38.9 4.1 57 141-197 97-167 (322)
232 1ofh_A ATP-dependent HSL prote 75.6 0.89 3.1E-05 40.9 1.4 19 142-160 50-68 (310)
233 1ls1_A Signal recognition part 75.6 7.7 0.00026 34.9 7.7 19 142-160 98-116 (295)
234 3nhv_A BH2092 protein; alpha-b 75.5 2.2 7.5E-05 34.0 3.5 36 345-380 73-110 (144)
235 3i32_A Heat resistant RNA depe 75.4 4.6 0.00016 36.5 6.1 68 173-252 28-102 (300)
236 3d8b_A Fidgetin-like protein 1 75.3 1.9 6.4E-05 40.1 3.5 54 103-160 81-135 (357)
237 3tau_A Guanylate kinase, GMP k 75.1 0.91 3.1E-05 38.6 1.2 18 142-159 8-25 (208)
238 1lvg_A Guanylate kinase, GMP k 75.1 0.87 3E-05 38.4 1.1 18 142-159 4-21 (198)
239 3nbx_X ATPase RAVA; AAA+ ATPas 75.0 2.3 7.7E-05 41.6 4.1 29 129-159 30-58 (500)
240 3u4q_B ATP-dependent helicase/ 75.0 1.2 4.2E-05 48.4 2.5 38 146-183 5-42 (1166)
241 2eyu_A Twitching motility prot 74.9 1 3.4E-05 40.1 1.4 18 142-159 25-42 (261)
242 3iij_A Coilin-interacting nucl 74.9 0.96 3.3E-05 37.2 1.3 19 142-160 11-29 (180)
243 2qmh_A HPR kinase/phosphorylas 74.9 0.97 3.3E-05 38.4 1.3 18 142-159 34-51 (205)
244 2fsx_A RV0390, COG0607: rhodan 74.9 3.1 0.00011 33.1 4.3 36 344-379 80-116 (148)
245 3b85_A Phosphate starvation-in 74.6 2.5 8.5E-05 36.0 3.9 32 126-159 8-39 (208)
246 3jvv_A Twitching mobility prot 74.5 0.94 3.2E-05 42.3 1.2 18 142-159 123-140 (356)
247 4ag6_A VIRB4 ATPase, type IV s 74.5 2.1 7.3E-05 40.2 3.8 40 142-184 35-74 (392)
248 3a8t_A Adenylate isopentenyltr 74.3 0.89 3.1E-05 42.0 1.0 19 142-160 40-58 (339)
249 3lda_A DNA repair protein RAD5 74.0 6.6 0.00022 37.1 7.0 41 141-181 177-220 (400)
250 1lv7_A FTSH; alpha/beta domain 73.7 0.98 3.3E-05 39.7 1.1 52 103-159 9-62 (257)
251 3t15_A Ribulose bisphosphate c 73.7 1 3.5E-05 40.7 1.2 18 142-159 36-53 (293)
252 3uk6_A RUVB-like 2; hexameric 73.5 0.96 3.3E-05 42.0 1.0 19 142-160 70-88 (368)
253 2vl7_A XPD; helicase, unknown 73.4 2.5 8.7E-05 41.7 4.1 58 334-398 375-432 (540)
254 3bh0_A DNAB-like replicative h 73.0 5.1 0.00017 36.4 5.8 50 142-195 68-117 (315)
255 1s2m_A Putative ATP-dependent 73.0 11 0.00038 34.9 8.5 70 172-253 257-333 (400)
256 1zp6_A Hypothetical protein AT 72.9 0.95 3.3E-05 37.6 0.8 18 142-159 9-26 (191)
257 2gza_A Type IV secretion syste 72.9 1.1 3.8E-05 41.9 1.3 17 142-158 175-191 (361)
258 2k0z_A Uncharacterized protein 72.8 4.1 0.00014 30.5 4.3 37 343-379 55-91 (110)
259 2qor_A Guanylate kinase; phosp 72.8 1.2 4E-05 37.7 1.3 18 142-159 12-29 (204)
260 2c9o_A RUVB-like 1; hexameric 72.6 1.1 3.7E-05 43.4 1.2 19 142-160 63-81 (456)
261 1qxn_A SUD, sulfide dehydrogen 72.5 2.5 8.5E-05 33.3 3.1 38 343-380 81-119 (137)
262 1ojl_A Transcriptional regulat 72.4 1.5 5E-05 39.9 1.9 18 142-159 25-42 (304)
263 2eyq_A TRCF, transcription-rep 72.2 7.2 0.00025 42.3 7.6 57 343-399 651-711 (1151)
264 1kag_A SKI, shikimate kinase I 72.2 1.2 4.1E-05 36.3 1.2 18 142-159 4-21 (173)
265 1gmx_A GLPE protein; transfera 72.0 2.4 8.3E-05 31.6 2.8 38 344-381 58-96 (108)
266 1y63_A LMAJ004144AAA protein; 72.0 1.2 4E-05 37.0 1.1 19 142-160 10-28 (184)
267 2xxa_A Signal recognition part 71.8 10 0.00034 36.3 7.8 43 142-186 100-144 (433)
268 1iy2_A ATP-dependent metallopr 71.7 1.2 4.1E-05 39.7 1.2 52 103-159 37-90 (278)
269 2cvh_A DNA repair and recombin 71.7 1.9 6.4E-05 36.5 2.4 34 142-181 20-53 (220)
270 2d7d_A Uvrabc system protein B 71.6 29 0.00098 35.1 11.5 75 172-258 444-525 (661)
271 1tq1_A AT5G66040, senescence-a 71.6 2.6 9E-05 32.6 3.1 37 344-380 82-119 (129)
272 1um8_A ATP-dependent CLP prote 71.6 1.3 4.3E-05 41.5 1.4 19 142-160 72-90 (376)
273 3exa_A TRNA delta(2)-isopenten 71.6 1.1 3.9E-05 40.8 1.0 19 142-160 3-21 (322)
274 2hhg_A Hypothetical protein RP 71.5 2.4 8.3E-05 33.2 2.8 37 344-380 86-123 (139)
275 3foz_A TRNA delta(2)-isopenten 71.3 1.2 4E-05 40.7 1.0 18 143-160 11-28 (316)
276 3lw7_A Adenylate kinase relate 71.3 1.1 3.9E-05 36.2 0.8 18 143-160 2-19 (179)
277 3tr0_A Guanylate kinase, GMP k 71.2 1.3 4.4E-05 37.2 1.2 18 142-159 7-24 (205)
278 2j41_A Guanylate kinase; GMP, 71.2 1.3 4.4E-05 37.2 1.2 18 142-159 6-23 (207)
279 1hqc_A RUVB; extended AAA-ATPa 71.1 1.3 4.4E-05 40.2 1.3 18 142-159 38-55 (324)
280 3h11_B Caspase-8; cell death, 71.0 7.9 0.00027 34.4 6.4 48 344-392 17-85 (271)
281 1u0j_A DNA replication protein 70.8 5.2 0.00018 35.5 5.1 46 112-160 73-122 (267)
282 2ze6_A Isopentenyl transferase 70.5 1.2 4.1E-05 39.3 0.9 17 144-160 3-19 (253)
283 4eun_A Thermoresistant glucoki 70.4 1.4 4.7E-05 37.1 1.2 19 142-160 29-47 (200)
284 1v5w_A DMC1, meiotic recombina 70.4 4.3 0.00015 37.4 4.7 55 142-196 122-180 (343)
285 2ffh_A Protein (FFH); SRP54, s 70.3 18 0.00061 34.4 9.0 20 142-161 98-117 (425)
286 3fht_A ATP-dependent RNA helic 70.3 14 0.00048 34.3 8.4 70 173-254 266-342 (412)
287 2iut_A DNA translocase FTSK; n 70.2 3.5 0.00012 40.9 4.2 27 142-168 214-240 (574)
288 2h54_A Caspase-1; allosteric s 69.8 13 0.00044 30.7 7.0 47 345-392 44-101 (178)
289 1g8p_A Magnesium-chelatase 38 69.8 1.5 5.2E-05 40.3 1.4 19 142-160 45-63 (350)
290 2r2a_A Uncharacterized protein 69.5 1.8 6.2E-05 36.7 1.8 22 143-164 6-27 (199)
291 3a00_A Guanylate kinase, GMP k 69.5 1.5 5.1E-05 36.4 1.2 17 143-159 2-18 (186)
292 4fcw_A Chaperone protein CLPB; 69.5 1.3 4.3E-05 40.1 0.8 18 143-160 48-65 (311)
293 3vfd_A Spastin; ATPase, microt 69.3 1.4 5E-05 41.4 1.2 55 103-160 112-166 (389)
294 1xti_A Probable ATP-dependent 69.3 10 0.00035 34.9 7.2 52 344-398 76-132 (391)
295 3ney_A 55 kDa erythrocyte memb 69.3 1.5 5.1E-05 37.1 1.2 18 142-159 19-36 (197)
296 3d1p_A Putative thiosulfate su 69.2 3.1 0.00011 32.6 3.0 37 344-380 91-128 (139)
297 4gp7_A Metallophosphoesterase; 69.0 1.3 4.4E-05 36.3 0.7 19 142-160 9-27 (171)
298 3lnc_A Guanylate kinase, GMP k 68.8 1.9 6.5E-05 37.1 1.8 19 142-160 27-45 (231)
299 2r44_A Uncharacterized protein 68.7 1.2 4.2E-05 40.7 0.6 18 142-159 46-63 (331)
300 3pxg_A Negative regulator of g 68.5 2.1 7.3E-05 41.4 2.3 20 141-160 200-219 (468)
301 2pt7_A CAG-ALFA; ATPase, prote 68.5 1.5 5.2E-05 40.4 1.1 17 142-158 171-187 (330)
302 2yjt_D ATP-dependent RNA helic 71.6 1 3.5E-05 36.8 0.0 71 172-254 29-106 (170)
303 1knq_A Gluconate kinase; ALFA/ 68.3 1.4 4.7E-05 36.0 0.8 19 142-160 8-26 (175)
304 2r62_A Cell division protease 68.3 0.89 3E-05 40.2 -0.5 19 142-160 44-62 (268)
305 2ewv_A Twitching motility prot 68.0 1.7 5.8E-05 40.8 1.4 18 142-159 136-153 (372)
306 2j37_W Signal recognition part 68.0 9 0.00031 37.4 6.6 37 142-181 101-137 (504)
307 3cmw_A Protein RECA, recombina 67.9 3 0.0001 46.8 3.5 91 142-259 1431-1522(1706)
308 1kht_A Adenylate kinase; phosp 67.9 1.6 5.4E-05 36.0 1.1 19 142-160 3-21 (192)
309 3ilm_A ALR3790 protein; rhodan 67.4 4.3 0.00015 32.1 3.5 37 344-380 56-93 (141)
310 3fe2_A Probable ATP-dependent 67.4 11 0.00038 32.3 6.6 45 344-388 102-150 (242)
311 3kb2_A SPBC2 prophage-derived 67.4 1.5 5.3E-05 35.4 0.9 17 144-160 3-19 (173)
312 2yhs_A FTSY, cell division pro 67.3 8.8 0.0003 37.3 6.3 19 142-160 293-311 (503)
313 1ly1_A Polynucleotide kinase; 67.1 1.6 5.4E-05 35.6 0.9 17 143-159 3-19 (181)
314 1nij_A Hypothetical protein YJ 67.0 3 0.0001 38.0 2.9 16 144-159 6-21 (318)
315 1hv8_A Putative ATP-dependent 67.0 16 0.00056 33.0 8.0 71 172-254 237-314 (367)
316 1gvn_B Zeta; postsegregational 67.0 1.7 5.8E-05 39.1 1.1 19 142-160 33-51 (287)
317 1vee_A Proline-rich protein fa 66.9 4.4 0.00015 31.6 3.5 36 344-379 74-110 (134)
318 3cm0_A Adenylate kinase; ATP-b 66.5 1.4 4.6E-05 36.4 0.3 19 142-160 4-22 (186)
319 3uie_A Adenylyl-sulfate kinase 66.4 1.6 5.6E-05 36.6 0.9 19 141-159 24-42 (200)
320 2rhm_A Putative kinase; P-loop 66.3 1.6 5.6E-05 36.1 0.8 19 142-160 5-23 (193)
321 1z6g_A Guanylate kinase; struc 66.2 2 6.8E-05 36.8 1.4 18 142-159 23-40 (218)
322 2j0s_A ATP-dependent RNA helic 65.8 19 0.00064 33.5 8.3 69 173-253 276-351 (410)
323 1s96_A Guanylate kinase, GMP k 65.6 2 6.7E-05 37.0 1.2 18 142-159 16-33 (219)
324 3bgw_A DNAB-like replicative h 65.4 3.7 0.00013 39.5 3.2 38 141-181 196-233 (444)
325 1nlf_A Regulatory protein REPA 65.4 8.1 0.00028 34.2 5.3 54 142-197 30-91 (279)
326 3t61_A Gluconokinase; PSI-biol 65.2 2.3 7.8E-05 35.7 1.5 19 142-160 18-36 (202)
327 1c4o_A DNA nucleotide excision 65.0 43 0.0015 33.8 11.2 75 172-258 438-519 (664)
328 4akg_A Glutathione S-transfera 64.9 5.5 0.00019 47.0 5.0 48 111-161 891-942 (2695)
329 2zr9_A Protein RECA, recombina 64.9 4.2 0.00014 37.7 3.4 38 142-182 61-98 (349)
330 3p45_A Caspase-6; protease, hu 64.7 20 0.00069 29.5 7.1 48 345-393 45-106 (179)
331 1u94_A RECA protein, recombina 64.4 4.4 0.00015 37.7 3.4 38 142-182 63-100 (356)
332 3pxi_A Negative regulator of g 64.1 2.8 9.7E-05 43.3 2.3 20 141-160 200-219 (758)
333 3crm_A TRNA delta(2)-isopenten 64.0 2 6.8E-05 39.4 1.0 18 143-160 6-23 (323)
334 2px0_A Flagellar biosynthesis 63.9 4.3 0.00015 36.6 3.2 20 141-160 104-123 (296)
335 2lci_A Protein OR36; structura 63.8 38 0.0013 24.3 10.0 67 322-388 29-95 (134)
336 1qtn_A Caspase-8; apoptosis, d 63.8 18 0.00063 29.3 6.7 39 354-393 54-92 (164)
337 3e4c_A Caspase-1; zymogen, inf 63.8 17 0.00059 32.7 7.2 47 345-392 61-118 (302)
338 3c8u_A Fructokinase; YP_612366 63.7 2.2 7.4E-05 36.1 1.1 19 141-159 21-39 (208)
339 2c95_A Adenylate kinase 1; tra 63.5 2.2 7.6E-05 35.3 1.1 19 142-160 9-27 (196)
340 3vkg_A Dynein heavy chain, cyt 63.5 7.7 0.00026 46.4 5.8 49 110-161 873-925 (3245)
341 3d3q_A TRNA delta(2)-isopenten 63.4 2.1 7.1E-05 39.6 1.0 18 143-160 8-25 (340)
342 3h11_A CAsp8 and FADD-like apo 63.3 4.6 0.00016 36.0 3.2 49 344-393 43-91 (272)
343 3eph_A TRNA isopentenyltransfe 63.1 2.1 7.2E-05 40.5 1.0 18 143-160 3-20 (409)
344 1aky_A Adenylate kinase; ATP:A 63.1 2.4 8.1E-05 36.2 1.2 19 142-160 4-22 (220)
345 1vec_A ATP-dependent RNA helic 63.0 15 0.00052 30.3 6.4 41 344-384 71-116 (206)
346 3nwn_A Kinesin-like protein KI 63.0 2.8 9.6E-05 39.0 1.8 27 133-159 96-122 (359)
347 1zuh_A Shikimate kinase; alpha 62.9 2.2 7.4E-05 34.6 0.9 19 142-160 7-25 (168)
348 1g41_A Heat shock protein HSLU 62.8 2.4 8.3E-05 40.7 1.4 19 142-160 50-68 (444)
349 2db3_A ATP-dependent RNA helic 62.6 21 0.00073 33.7 8.1 66 175-252 302-374 (434)
350 2iyv_A Shikimate kinase, SK; t 62.6 2.4 8.4E-05 34.8 1.2 19 142-160 2-20 (184)
351 1tue_A Replication protein E1; 62.5 2.3 7.9E-05 36.3 1.0 45 113-159 29-75 (212)
352 1tev_A UMP-CMP kinase; ploop, 62.4 2.1 7E-05 35.4 0.7 19 142-160 3-21 (196)
353 2vli_A Antibiotic resistance p 62.3 2.5 8.7E-05 34.5 1.3 19 142-160 5-23 (183)
354 4a1f_A DNAB helicase, replicat 62.2 5 0.00017 37.0 3.3 37 142-181 46-82 (338)
355 3f9v_A Minichromosome maintena 62.0 3.2 0.00011 41.6 2.2 15 144-158 329-343 (595)
356 2bdt_A BH3686; alpha-beta prot 61.9 1.8 6E-05 35.9 0.2 19 142-160 2-20 (189)
357 1znw_A Guanylate kinase, GMP k 61.9 2.6 8.8E-05 35.6 1.2 18 142-159 20-37 (207)
358 2v54_A DTMP kinase, thymidylat 61.8 2.6 8.8E-05 35.2 1.2 19 142-160 4-22 (204)
359 1bg2_A Kinesin; motor protein, 61.8 3.1 0.00011 38.2 1.8 25 135-159 71-95 (325)
360 1in4_A RUVB, holliday junction 61.6 3.3 0.00011 38.0 2.0 19 142-160 51-69 (334)
361 1ak2_A Adenylate kinase isoenz 61.1 2.8 9.6E-05 36.1 1.4 19 142-160 16-34 (233)
362 1zd8_A GTP:AMP phosphotransfer 61.1 2.5 8.6E-05 36.2 1.1 18 142-159 7-24 (227)
363 2pez_A Bifunctional 3'-phospho 61.1 2.4 8.2E-05 34.8 0.9 18 142-159 5-22 (179)
364 1zak_A Adenylate kinase; ATP:A 61.0 2.8 9.4E-05 35.8 1.3 19 142-160 5-23 (222)
365 1cr0_A DNA primase/helicase; R 61.0 5.4 0.00018 35.7 3.3 38 142-181 35-72 (296)
366 3dc4_A Kinesin-like protein NO 60.8 3 0.0001 38.6 1.6 25 135-159 88-112 (344)
367 3asz_A Uridine kinase; cytidin 60.4 2.4 8.4E-05 35.7 0.8 18 142-159 6-23 (211)
368 1ukz_A Uridylate kinase; trans 60.1 2.5 8.4E-05 35.4 0.8 18 142-159 15-32 (203)
369 1yks_A Genome polyprotein [con 60.1 19 0.00064 34.3 7.2 66 173-251 177-245 (440)
370 2cdn_A Adenylate kinase; phosp 60.0 2.8 9.7E-05 35.0 1.2 19 142-160 20-38 (201)
371 2vvg_A Kinesin-2; motor protei 59.9 3.5 0.00012 38.2 1.8 24 136-159 84-107 (350)
372 3cf2_A TER ATPase, transitiona 59.7 3.1 0.00011 43.2 1.6 53 102-159 473-528 (806)
373 2y65_A Kinesin, kinesin heavy 59.7 3.5 0.00012 38.5 1.8 25 135-159 78-102 (365)
374 1urh_A 3-mercaptopyruvate sulf 59.6 13 0.00045 32.8 5.6 40 343-382 229-269 (280)
375 1via_A Shikimate kinase; struc 59.6 2.8 9.6E-05 34.2 1.0 18 143-160 5-22 (175)
376 3b6u_A Kinesin-like protein KI 59.4 3.5 0.00012 38.5 1.8 25 135-159 95-119 (372)
377 2nn3_C Caspase-1; cysteine pro 59.4 21 0.00071 32.4 6.9 48 345-393 61-121 (310)
378 2bwj_A Adenylate kinase 5; pho 59.4 2.8 9.5E-05 34.8 1.0 18 142-159 12-29 (199)
379 1f9v_A Kinesin-like protein KA 59.4 4.1 0.00014 37.7 2.2 27 133-159 76-102 (347)
380 2fp3_A Caspase NC; apoptosis, 59.4 17 0.00058 33.0 6.4 48 344-392 61-120 (316)
381 2pl3_A Probable ATP-dependent 59.3 11 0.00039 32.0 5.0 41 344-384 97-141 (236)
382 1goj_A Kinesin, kinesin heavy 59.2 3.6 0.00012 38.2 1.8 24 136-159 75-98 (355)
383 3fb4_A Adenylate kinase; psych 59.2 2.7 9.3E-05 35.5 0.9 17 144-160 2-18 (216)
384 2yvu_A Probable adenylyl-sulfa 59.2 2.7 9.2E-05 34.7 0.9 19 142-160 13-31 (186)
385 2r8r_A Sensor protein; KDPD, P 59.1 5.6 0.00019 34.4 2.9 26 143-168 7-32 (228)
386 1ye8_A Protein THEP1, hypothet 58.8 2.8 9.7E-05 34.6 0.9 16 144-159 2-17 (178)
387 3o8b_A HCV NS3 protease/helica 58.7 13 0.00045 37.6 5.9 67 172-251 395-461 (666)
388 2qt1_A Nicotinamide riboside k 58.7 2.7 9.3E-05 35.3 0.8 18 142-159 21-38 (207)
389 2plr_A DTMP kinase, probable t 58.6 2.8 9.4E-05 35.2 0.9 19 142-160 4-22 (213)
390 2q6t_A DNAB replication FORK h 58.6 5.9 0.0002 37.9 3.3 39 141-181 199-237 (444)
391 3dl0_A Adenylate kinase; phosp 58.5 2.8 9.7E-05 35.5 0.9 17 144-160 2-18 (216)
392 1t5c_A CENP-E protein, centrom 58.5 3.8 0.00013 38.0 1.8 25 135-159 71-95 (349)
393 4a14_A Kinesin, kinesin-like p 58.3 3.8 0.00013 37.9 1.8 25 135-159 77-101 (344)
394 3nwj_A ATSK2; P loop, shikimat 58.2 3.3 0.00011 36.4 1.3 19 142-160 48-66 (250)
395 2zfi_A Kinesin-like protein KI 58.0 3.9 0.00013 38.2 1.8 25 134-158 82-106 (366)
396 2ce7_A Cell division protein F 58.0 3 0.0001 40.5 1.1 52 103-159 13-66 (476)
397 4f67_A UPF0176 protein LPG2838 57.9 9.9 0.00034 33.6 4.4 48 335-382 172-220 (265)
398 3lre_A Kinesin-like protein KI 57.9 3.9 0.00013 38.0 1.8 25 135-159 99-123 (355)
399 2wwf_A Thymidilate kinase, put 57.9 3.2 0.00011 34.9 1.2 19 142-160 10-28 (212)
400 1pyo_A Caspase-2; apoptosis, c 57.7 18 0.00061 29.5 5.6 47 345-392 34-94 (167)
401 3gbj_A KIF13B protein; kinesin 57.6 4 0.00014 37.9 1.8 27 133-159 84-110 (354)
402 2h58_A Kinesin-like protein KI 57.6 4 0.00014 37.5 1.8 27 133-159 72-98 (330)
403 3tg1_B Dual specificity protei 57.5 6.2 0.00021 31.7 2.8 36 344-379 93-137 (158)
404 2p5t_B PEZT; postsegregational 57.5 2.5 8.5E-05 37.1 0.4 19 142-160 32-50 (253)
405 1nn5_A Similar to deoxythymidy 57.5 3.3 0.00011 34.8 1.2 19 142-160 9-27 (215)
406 1cke_A CK, MSSA, protein (cyti 57.5 3.1 0.00011 35.4 1.0 19 142-160 5-23 (227)
407 1m72_A Caspase-1; caspase, cys 57.2 23 0.00079 31.3 6.7 48 345-393 33-93 (272)
408 1nks_A Adenylate kinase; therm 57.1 3 0.0001 34.3 0.8 17 144-160 3-19 (194)
409 2nr8_A Kinesin-like protein KI 57.1 4.1 0.00014 37.9 1.8 26 134-159 96-121 (358)
410 1e6c_A Shikimate kinase; phosp 57.0 3.3 0.00011 33.4 1.1 18 143-160 3-20 (173)
411 4akg_A Glutathione S-transfera 57.0 3.5 0.00012 48.6 1.5 26 133-159 1259-1284(2695)
412 1qde_A EIF4A, translation init 56.8 8.2 0.00028 32.6 3.6 42 343-384 81-126 (224)
413 1v8k_A Kinesin-like protein KI 56.6 3.6 0.00012 39.0 1.3 24 136-159 149-172 (410)
414 2dko_A Caspase-3; low barrier 56.6 21 0.00071 28.3 5.7 48 345-393 17-78 (146)
415 3t0q_A AGR253WP; kinesin, alph 56.6 3.9 0.00013 37.9 1.6 27 133-159 77-103 (349)
416 3tif_A Uncharacterized ABC tra 56.5 3.5 0.00012 35.8 1.2 17 142-158 31-47 (235)
417 1sxj_A Activator 1 95 kDa subu 56.5 4.2 0.00014 39.9 1.8 42 245-288 147-189 (516)
418 3tlx_A Adenylate kinase 2; str 56.3 3.2 0.00011 36.2 0.9 19 142-160 29-47 (243)
419 3bor_A Human initiation factor 56.1 14 0.00049 31.5 5.2 54 343-399 97-154 (237)
420 4etp_A Kinesin-like protein KA 56.1 4.4 0.00015 38.4 1.9 27 133-159 132-158 (403)
421 3od5_A Caspase-6; caspase doma 55.8 24 0.0008 31.4 6.5 47 345-392 22-82 (278)
422 2wbe_C Bipolar kinesin KRP-130 55.7 4.2 0.00014 38.1 1.6 25 135-159 94-118 (373)
423 1qf9_A UMP/CMP kinase, protein 55.7 3.1 0.00011 34.2 0.7 19 142-160 6-24 (194)
424 1ry6_A Internal kinesin; kines 55.6 3.6 0.00012 38.3 1.2 18 142-159 83-102 (360)
425 2bbw_A Adenylate kinase 4, AK4 55.6 3.8 0.00013 35.6 1.2 18 142-159 27-44 (246)
426 3m6a_A ATP-dependent protease 55.5 3.6 0.00012 40.7 1.2 20 141-160 107-126 (543)
427 4a74_A DNA repair and recombin 55.3 4 0.00014 34.6 1.4 20 142-161 25-44 (231)
428 1x88_A Kinesin-like protein KI 55.2 3.9 0.00013 38.1 1.3 26 134-159 81-106 (359)
429 1m7g_A Adenylylsulfate kinase; 55.1 3.4 0.00012 35.0 0.8 18 142-159 25-42 (211)
430 2heh_A KIF2C protein; kinesin, 54.6 4 0.00014 38.3 1.3 25 135-159 128-152 (387)
431 3u06_A Protein claret segregat 54.5 4.3 0.00015 38.5 1.5 27 133-159 130-156 (412)
432 3bfn_A Kinesin-like protein KI 54.4 4.2 0.00014 38.2 1.4 24 136-159 93-116 (388)
433 2pt5_A Shikimate kinase, SK; a 54.4 3.7 0.00013 33.0 0.9 17 144-160 2-18 (168)
434 2r6a_A DNAB helicase, replicat 54.4 6 0.00021 38.0 2.6 39 141-181 202-240 (454)
435 4e22_A Cytidylate kinase; P-lo 54.1 4 0.00014 35.7 1.2 19 142-160 27-45 (252)
436 1pzn_A RAD51, DNA repair and r 54.0 6.9 0.00024 36.2 2.8 41 141-181 130-173 (349)
437 3kta_A Chromosome segregation 54.0 3.7 0.00013 33.6 0.8 16 144-159 28-43 (182)
438 2xau_A PRE-mRNA-splicing facto 53.9 21 0.00071 36.9 6.7 74 172-252 302-393 (773)
439 3hgt_A HDA1 complex subunit 3; 53.7 15 0.00051 33.5 4.9 54 328-381 107-162 (328)
440 2v9p_A Replication protein E1; 53.6 5.2 0.00018 36.3 1.9 19 141-159 125-143 (305)
441 3be4_A Adenylate kinase; malar 53.6 3.8 0.00013 34.9 0.9 19 142-160 5-23 (217)
442 3a4m_A L-seryl-tRNA(SEC) kinas 53.6 3.7 0.00013 36.1 0.9 19 142-160 4-22 (260)
443 1f2t_A RAD50 ABC-ATPase; DNA d 53.4 3.9 0.00013 32.6 0.9 17 143-159 24-40 (149)
444 2rep_A Kinesin-like protein KI 53.3 5.7 0.00019 37.2 2.1 27 133-159 107-133 (376)
445 3cob_A Kinesin heavy chain-lik 53.3 3.9 0.00013 38.2 1.0 27 133-159 71-97 (369)
446 2j32_A Caspase-3; Pro-caspase3 53.3 27 0.00093 30.4 6.5 48 345-393 17-78 (250)
447 2if2_A Dephospho-COA kinase; a 53.2 3.8 0.00013 34.2 0.8 16 144-159 3-18 (204)
448 1urh_A 3-mercaptopyruvate sulf 53.1 14 0.00048 32.6 4.7 38 343-380 85-124 (280)
449 3qf7_A RAD50; ABC-ATPase, ATPa 53.0 3.8 0.00013 38.2 0.9 16 144-159 25-40 (365)
450 1gku_B Reverse gyrase, TOP-RG; 52.9 12 0.00042 40.1 4.9 54 344-399 99-160 (1054)
451 1c9k_A COBU, adenosylcobinamid 52.7 7.2 0.00025 32.3 2.4 33 145-184 2-34 (180)
452 1fuu_A Yeast initiation factor 52.6 23 0.00079 32.5 6.3 45 343-387 88-136 (394)
453 1jjv_A Dephospho-COA kinase; P 52.4 4 0.00014 34.2 0.8 16 144-159 4-19 (206)
454 2gxq_A Heat resistant RNA depe 52.3 23 0.00079 29.1 5.7 42 344-385 72-115 (207)
455 2owm_A Nckin3-434, related to 52.2 5.5 0.00019 38.2 1.8 25 135-159 130-154 (443)
456 1e4v_A Adenylate kinase; trans 52.2 4.1 0.00014 34.4 0.9 17 144-160 2-18 (214)
457 2i3b_A HCR-ntpase, human cance 52.1 5.8 0.0002 33.1 1.8 18 142-159 1-18 (189)
458 2cbz_A Multidrug resistance-as 51.8 4.6 0.00016 35.0 1.2 17 142-158 31-47 (237)
459 2jaq_A Deoxyguanosine kinase; 51.8 4.2 0.00015 33.7 0.9 17 144-160 2-18 (205)
460 2ouc_A Dual specificity protei 51.3 7.4 0.00025 30.2 2.2 35 345-379 84-127 (142)
461 1sgw_A Putative ABC transporte 50.8 5.2 0.00018 34.2 1.3 17 142-158 35-51 (214)
462 2pbr_A DTMP kinase, thymidylat 50.8 4.4 0.00015 33.3 0.8 17 144-160 2-18 (195)
463 1q57_A DNA primase/helicase; d 50.7 8.2 0.00028 37.6 2.9 50 141-193 241-290 (503)
464 1ypw_A Transitional endoplasmi 50.6 4.2 0.00014 42.3 0.8 19 141-159 237-255 (806)
465 4fn4_A Short chain dehydrogena 50.5 35 0.0012 29.8 6.7 55 345-399 32-89 (254)
466 2r2a_A Uncharacterized protein 50.3 5.7 0.0002 33.5 1.5 41 247-287 88-132 (199)
467 2v6i_A RNA helicase; membrane, 50.2 25 0.00086 33.3 6.2 52 173-229 171-225 (431)
468 1uar_A Rhodanese; sulfurtransf 50.1 20 0.00068 31.7 5.2 37 343-379 232-270 (285)
469 3cf2_A TER ATPase, transitiona 50.1 4.9 0.00017 41.6 1.2 19 141-159 237-255 (806)
470 2z0h_A DTMP kinase, thymidylat 49.9 4.7 0.00016 33.3 0.9 16 145-160 3-18 (197)
471 2pcj_A ABC transporter, lipopr 49.9 4.9 0.00017 34.5 1.0 17 142-158 30-46 (224)
472 2dhr_A FTSH; AAA+ protein, hex 49.7 5 0.00017 39.2 1.1 53 103-160 28-82 (499)
473 2eg4_A Probable thiosulfate su 49.7 17 0.00057 31.1 4.5 38 343-380 183-220 (230)
474 4a2q_A RIG-I, retinoic acid in 49.5 24 0.0008 36.5 6.3 41 344-384 296-340 (797)
475 2pze_A Cystic fibrosis transme 49.5 5.3 0.00018 34.4 1.2 17 142-158 34-50 (229)
476 2ff7_A Alpha-hemolysin translo 49.4 5.3 0.00018 34.9 1.2 17 142-158 35-51 (247)
477 2ghi_A Transport protein; mult 49.3 5.4 0.00018 35.2 1.2 18 141-158 45-62 (260)
478 1rj9_A FTSY, signal recognitio 49.2 5.3 0.00018 36.2 1.2 19 141-159 101-119 (304)
479 1wrb_A DJVLGB; RNA helicase, D 49.2 23 0.00079 30.4 5.4 40 345-384 101-144 (253)
480 1rz3_A Hypothetical protein rb 49.2 4.6 0.00016 33.8 0.7 18 142-159 22-39 (201)
481 4ehd_A Caspase-3; caspase, apo 49.1 30 0.001 30.7 6.1 39 354-393 68-106 (277)
482 1uf9_A TT1252 protein; P-loop, 49.1 4.8 0.00016 33.4 0.8 19 142-160 8-26 (203)
483 3gfo_A Cobalt import ATP-bindi 48.9 5.5 0.00019 35.5 1.2 17 142-158 34-50 (275)
484 3aay_A Putative thiosulfate su 48.6 26 0.00088 30.8 5.7 50 329-378 62-113 (277)
485 1nw9_B Caspase 9, apoptosis-re 48.6 28 0.00094 30.9 5.8 47 345-392 22-82 (277)
486 3tqc_A Pantothenate kinase; bi 48.6 13 0.00044 33.9 3.7 16 144-159 94-109 (321)
487 2wv9_A Flavivirin protease NS2 48.5 40 0.0014 34.1 7.7 66 173-251 410-478 (673)
488 1e0c_A Rhodanese, sulfurtransf 48.4 16 0.00056 32.0 4.3 37 343-379 222-259 (271)
489 2oca_A DAR protein, ATP-depend 48.3 76 0.0026 30.4 9.5 74 173-257 347-427 (510)
490 4g1u_C Hemin import ATP-bindin 48.0 5.7 0.0002 35.2 1.2 17 142-158 37-53 (266)
491 1mv5_A LMRA, multidrug resista 48.0 5.1 0.00017 34.9 0.8 17 142-158 28-44 (243)
492 1vht_A Dephospho-COA kinase; s 47.9 5.2 0.00018 33.9 0.8 19 142-160 4-22 (218)
493 1vma_A Cell division protein F 47.7 10 0.00036 34.3 2.9 19 142-160 104-122 (306)
494 3tqf_A HPR(Ser) kinase; transf 47.7 6.7 0.00023 32.4 1.4 19 142-160 16-34 (181)
495 1e0c_A Rhodanese, sulfurtransf 47.5 23 0.0008 30.9 5.2 38 343-380 80-119 (271)
496 2xb4_A Adenylate kinase; ATP-b 47.5 5.3 0.00018 34.1 0.8 17 144-160 2-18 (223)
497 2ql9_A Caspase-7; cysteine pro 47.4 26 0.00089 28.7 5.0 48 345-393 45-106 (173)
498 1g6h_A High-affinity branched- 47.3 6 0.00021 34.8 1.2 17 142-158 33-49 (257)
499 1ji0_A ABC transporter; ATP bi 47.2 6.1 0.00021 34.3 1.2 17 142-158 32-48 (240)
500 3b9q_A Chloroplast SRP recepto 47.1 5.2 0.00018 36.2 0.8 18 142-159 100-117 (302)
No 1
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.3e-55 Score=440.45 Aligned_cols=387 Identities=58% Similarity=0.949 Sum_probs=212.7
Q ss_pred CcchHHHhhhccccCCCCchhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHhHHHHHHHHHhhhc
Q psy11867 3 SLSDWIAATKNTSALKPDDLIDVLSNVNLKQADTPSPTEDAKPAPSSPDSSAPGNKDEEDKPLSVAEKSLLQKIVRRGLI 82 (399)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
+.|+|+..++++|. .....++...+....++...+ ...+.....++.++.........+...++++.++.
T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (479)
T 3fmp_B 2 ATDSWALAVDEQEA-----AAESLSNLHLKEEKIKPDTNG-----AVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLV 71 (479)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred Ccchhhhhcchhhh-----hhcccccccccccccCccccc-----ccccCCCcchhhccccccchhhhHHHHHHhhhhhc
Confidence 36899999999986 344444444443322210000 01111112222223333445667788889999999
Q ss_pred cccccceeeccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHH
Q psy11867 83 ESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLT 162 (399)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~ 162 (399)
.....+++...+++.|+.+..+|++++|++.++++|+++||..|+++|.+++|.++++++++++++||||||||++|++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~ 151 (479)
T 3fmp_B 72 DNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLA 151 (479)
T ss_dssp CCCSCEEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHH
T ss_pred cCCccceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999855599999999999999999999
Q ss_pred HHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccc
Q psy11867 163 MLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFF 242 (399)
Q Consensus 163 il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~ 242 (399)
++..+.....++++|||+||++|+.|+++.+++++...+.+.+.+..++...........+|+|+||++|++++.+.+.+
T Consensus 152 il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~ 231 (479)
T 3fmp_B 152 MLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFI 231 (479)
T ss_dssp HHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCC
T ss_pred HHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCc
Confidence 99999887777899999999999999999999999887788888888888776666667899999999999998777778
Q ss_pred cCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEE
Q psy11867 243 DLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHY 322 (399)
Q Consensus 243 ~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~ 322 (399)
.+.++++|||||||++.+..++......+.+.++..+|+++||||++..+..++..++.+|..+.+.........+.+.+
T Consensus 232 ~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 311 (479)
T 3fmp_B 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYY 311 (479)
T ss_dssp CGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------
T ss_pred CcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEE
Confidence 88999999999999998766888888899999999999999999999999999999999999999988888888999999
Q ss_pred EEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 323 VMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 323 ~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.+.....+...+..++.....+++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv 388 (479)
T 3fmp_B 312 VLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 388 (479)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 99988788999999998888888999999999999999999999999999999999999999999999999999986
No 2
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.1e-49 Score=389.35 Aligned_cols=319 Identities=64% Similarity=1.063 Sum_probs=291.9
Q ss_pred hccccccceeeccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 81 LIESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++.+.+.+...+++.|+.+..+|+++++++.++++|.++||..|+++|.++++.++++.++++++++|||+|||++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 3 LVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp -----CHHHHHTTCTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred hhcccccceeecccCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 45667778888899999999999999999999999999999999999999999999998545999999999999999999
Q ss_pred HHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccc
Q psy11867 161 LTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYR 240 (399)
Q Consensus 161 l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~ 240 (399)
+|++..+.....++++||++||++|+.|+++.+++++...+++.+....++...........+|+|+||++|.+++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~ 162 (412)
T 3fht_A 83 LAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK 162 (412)
T ss_dssp HHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC
T ss_pred HHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcC
Confidence 99999998777778999999999999999999999998877888888888887766666778999999999999987767
Q ss_pred cccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeE
Q psy11867 241 FFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQ 320 (399)
Q Consensus 241 ~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~ 320 (399)
.+.+.+++++|+||||++.+..++......+...++..+|+++||||+++.+..++..++.++..+.+.........+.+
T Consensus 163 ~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T 3fht_A 163 FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ 242 (412)
T ss_dssp SSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEE
T ss_pred CcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceE
Confidence 77889999999999999987668888888999999999999999999999999999999999999998888888899999
Q ss_pred EEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 321 HYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 321 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+..+.....+...+..++.....+++||||++++.|+.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 321 (412)
T 3fht_A 243 YYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 321 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred EEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEE
Confidence 9999988889999999999988889999999999999999999999999999999999999999999999999999986
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.8e-49 Score=389.55 Aligned_cols=302 Identities=25% Similarity=0.428 Sum_probs=264.3
Q ss_pred ceeeccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhh
Q psy11867 88 LEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRV 167 (399)
Q Consensus 88 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l 167 (399)
+++.+.+.+. ++.+|++++|++.++++|.++||..|||+|.+++|.+++ |+|++++||||||||++|++|++..+
T Consensus 44 ~~~~~~~~p~---~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~--g~d~i~~a~TGsGKT~a~~lpil~~l 118 (434)
T 2db3_A 44 VKVTGSDVPQ---PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISS--GRDLMACAQTGSGKTAAFLLPILSKL 118 (434)
T ss_dssp EEEESSSCCC---CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEecCCCCCC---CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc--CCCEEEECCCCCCchHHHHHHHHHHH
Confidence 4455555544 467899999999999999999999999999999999998 79999999999999999999999887
Q ss_pred CCC-----CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhcc
Q psy11867 168 NPS-----IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKY 239 (399)
Q Consensus 168 ~~~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~ 239 (399)
... ..++++|||+||++||.|+++.+++++... ++.+...+||....... ..+++|+|+||++|++++.+
T Consensus 119 ~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~- 196 (434)
T 2db3_A 119 LEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR- 196 (434)
T ss_dssp HHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-
T ss_pred HhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-
Confidence 432 246789999999999999999999998764 57777788887654332 45789999999999998654
Q ss_pred ccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC--CCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccc
Q psy11867 240 RFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL--PSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDN 317 (399)
Q Consensus 240 ~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l--~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~ 317 (399)
..+.+++++++|+||||+|++. +|...+..++..+ ++.+|+++||||+++.+..++..++.++..+.+........+
T Consensus 197 ~~~~l~~~~~lVlDEah~~~~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~ 275 (434)
T 2db3_A 197 TFITFEDTRFVVLDEADRMLDM-GFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSD 275 (434)
T ss_dssp TSCCCTTCCEEEEETHHHHTST-TTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTT
T ss_pred CCcccccCCeEEEccHhhhhcc-CcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccc
Confidence 4567899999999999999975 7888888888875 678999999999999999999999999999988877777888
Q ss_pred eeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcc
Q psy11867 318 IKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397 (399)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~I 397 (399)
+.+.+..+.. ..|...+.+++..... ++||||++++.|+.+++.|...|+.+..+||++++.+|..+++.|++|+.+|
T Consensus 276 i~~~~~~~~~-~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 353 (434)
T 2db3_A 276 VKQTIYEVNK-YAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353 (434)
T ss_dssp EEEEEEECCG-GGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSE
T ss_pred cceEEEEeCc-HHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcE
Confidence 9999888765 5678888888877654 4999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy11867 398 YS 399 (399)
Q Consensus 398 LV 399 (399)
||
T Consensus 354 Lv 355 (434)
T 2db3_A 354 LI 355 (434)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 4
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=6.2e-50 Score=374.73 Aligned_cols=298 Identities=56% Similarity=0.916 Sum_probs=215.6
Q ss_pred CcchHHHhhhccccCCCCchhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHhHHHHHHHHHhhhc
Q psy11867 3 SLSDWIAATKNTSALKPDDLIDVLSNVNLKQADTPSPTEDAKPAPSSPDSSAPGNKDEEDKPLSVAEKSLLQKIVRRGLI 82 (399)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
++|+|+.++++||. ....+++...+........ ..+..+.....+..++++..+..+.++.+++++..+.
T Consensus 2 ~~~~~~~~~~~~e~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (300)
T 3fmo_B 2 ATDSWALAVDEQEA-----AAESLSNLHLKEEKIKPDT-----NGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLV 71 (300)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CcchHHHHHhhHHH-----Hhhhhhhhhhhcccccccc-----cccccccCCCccccccccchhhhHHHHHHhhhhcccc
Confidence 36899999999986 4455555544433221100 1111222223333334455567788999999999999
Q ss_pred cccccceeeccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHH
Q psy11867 83 ESKQELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLT 162 (399)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~ 162 (399)
+..+++++.+.+++.|+.+..+|++++|++.++++|.++||..||++|.+++|.+++++++|++++||||||||++|++|
T Consensus 72 ~~~~~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp 151 (300)
T 3fmo_B 72 DNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLA 151 (300)
T ss_dssp CCCSCEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHH
T ss_pred cccccceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999855599999999999999999999
Q ss_pred HHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccc
Q psy11867 163 MLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFF 242 (399)
Q Consensus 163 il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~ 242 (399)
+++.+.....++++|||+||++||.|+++.++.++..++++.+....++....+.....++|+|+||++|++++.+.+.+
T Consensus 152 ~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 231 (300)
T 3fmo_B 152 MLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFI 231 (300)
T ss_dssp HHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCC
T ss_pred HHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCC
Confidence 99999887778899999999999999999999999887788888999888777666778899999999999998776778
Q ss_pred cCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccc
Q psy11867 243 DLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKR 310 (399)
Q Consensus 243 ~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~ 310 (399)
+++++++|||||||+|++..++...+..+.+.+++++|+++||||+++.+..+++.++.+|..|.+..
T Consensus 232 ~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp CGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 89999999999999999866899999999999999999999999999999999999999999988764
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.9e-46 Score=366.60 Aligned_cols=294 Identities=35% Similarity=0.639 Sum_probs=265.2
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe
Q psy11867 101 SVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA 180 (399)
Q Consensus 101 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 180 (399)
...+|++++|++.+.++|.++||..|+++|.++++.+++ |+|+++++|||||||++|++|++..+.....+.++||++
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~--~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 112 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIK--GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILA 112 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEEC
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC--CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEc
Confidence 456899999999999999999999999999999999998 699999999999999999999999987666778999999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh
Q psy11867 181 PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV 257 (399)
Q Consensus 181 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~ 257 (399)
||++|+.|+++.+++++... ++.+....|+....... ...++|+|+||++|.+++.. ..+.+.+++++|+||||+
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~ 190 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADE 190 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHH
T ss_pred CcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEccHHH
Confidence 99999999999999998765 67777778887654332 35679999999999998654 466788999999999999
Q ss_pred HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHH
Q psy11867 258 MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSN 337 (399)
Q Consensus 258 l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 337 (399)
+.+. ++...+..+...+++..|+++||||++..+..+...++.+|..+.+........++.+.+..+.....|...+..
T Consensus 191 ~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 269 (410)
T 2j0s_A 191 MLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 269 (410)
T ss_dssp HTST-TTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHH
T ss_pred HHhh-hhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHH
Confidence 9864 788888899999999999999999999999999999999999988887777888999999998887779999999
Q ss_pred HhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 338 IYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 338 ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
++.....+++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||
T Consensus 270 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 331 (410)
T 2j0s_A 270 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 331 (410)
T ss_dssp HHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEE
T ss_pred HHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 99888888999999999999999999999999999999999999999999999999999986
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=359.14 Aligned_cols=292 Identities=27% Similarity=0.417 Sum_probs=251.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC-----------
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS----------- 170 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~----------- 170 (399)
+.+|++++|++.+.++|..+||..|+|+|.+++|.++. |+|++++||||||||++|++|++..+...
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~--~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKE--KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHcc--CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 56799999999999999999999999999999999998 79999999999999999999999876432
Q ss_pred -------CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccc
Q psy11867 171 -------IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYR 240 (399)
Q Consensus 171 -------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~ 240 (399)
..++++||++||++|+.|+++.+++++... ++.+....|+....... ...++|+|+||++|.+++.. .
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~ 169 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-G 169 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-T
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-C
Confidence 124789999999999999999999998764 67777788876554332 45679999999999998654 4
Q ss_pred cccCCceeEEEEechhhHhhcCCchHHHHHHHHh--CCC--CCcEEEEEeeCChhHHHHHHhhCCCCeEEeccccccccc
Q psy11867 241 FFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKR--LPS--DCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLD 316 (399)
Q Consensus 241 ~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~--l~~--~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~ 316 (399)
.+.+.+++++|+||||++.+. ++...+..+... ++. ..|+++||||++..+..++..++.++..+.+........
T Consensus 170 ~~~~~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDM-GFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSE 248 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHT-TCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCS
T ss_pred CcChhhCcEEEEEChhHhhcc-CcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 567889999999999999875 688888888774 333 689999999999999999999999999888877777778
Q ss_pred ceeEEEEEeCChhhHHHHHHHHhccC-CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy11867 317 NIKQHYVMCKNIDEKFEAVSNIYGVV-TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEF 395 (399)
Q Consensus 317 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~ 395 (399)
++.+.+..+.. ..|...+..++... ..+++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.
T Consensus 249 ~i~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 327 (417)
T 2i4i_A 249 NITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 327 (417)
T ss_dssp SEEEEEEECCG-GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSS
T ss_pred CceEEEEEecc-HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCC
Confidence 88888887765 66888888888876 45789999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q psy11867 396 KIYS 399 (399)
Q Consensus 396 ~ILV 399 (399)
+|||
T Consensus 328 ~vlv 331 (417)
T 2i4i_A 328 PILV 331 (417)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9986
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.7e-45 Score=352.31 Aligned_cols=295 Identities=50% Similarity=0.802 Sum_probs=264.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|++++|++.++++|.++||..|+|+|.++++.++++.++++++++|||+|||++|++|++..+.....++++||++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 46899999999999999999999999999999999998544999999999999999999999999887667789999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhc
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIAT 261 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~ 261 (399)
|++|+.|+++.+++++... .+.+....++... ......++|+|+||++|.+++.. ..+.+.+++++|+||||++.+.
T Consensus 84 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFT-KITSQLIVPDSFE-KNKQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSC-TTSCBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhccc-CeeEEEEecCchh-hhccCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhhhcCc
Confidence 9999999999999998765 5555555555432 22344678999999999988643 5667889999999999999876
Q ss_pred CCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhcc
Q psy11867 262 QGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGV 341 (399)
Q Consensus 262 ~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~ 341 (399)
.++...+..+...+++..|++++|||+++.+..+...++.++..+.+.........+.+.+..+.....+...+..++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGL 240 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHh
Confidence 67888888999999999999999999999999999999999999888877777888999999998888899999999998
Q ss_pred CCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 342 VTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 342 ~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...+++||||++++.|+.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 241 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 298 (395)
T 3pey_A 241 MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI 298 (395)
T ss_dssp TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEE
T ss_pred ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 8889999999999999999999999999999999999999999999999999999986
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-44 Score=353.09 Aligned_cols=293 Identities=36% Similarity=0.621 Sum_probs=260.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|+++++++.+++.|.++||..|+++|.++++.+++ |+|+++++|||||||++|++|+++.+.....+.++||++|
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 116 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIK--GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAP 116 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT--TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC--CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeC
Confidence 46799999999999999999999999999999999998 6999999999999999999999999887667788999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh----ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK----KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV 257 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~ 257 (399)
|++|+.|+++.+++++... +..+....++....... ...++|+|+||++|++++.. +.+.+.+++++|+||||+
T Consensus 117 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEECSHHH
T ss_pred hHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEECHHH
Confidence 9999999999999998765 56777777776554332 25679999999999998654 556788899999999999
Q ss_pred HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHH
Q psy11867 258 MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSN 337 (399)
Q Consensus 258 l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 337 (399)
+.+. ++...+..++..+++++|+++||||++..+..+...++.+|..+...........+.+.+..+...+.+...+..
T Consensus 195 ~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 195 MLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHHT-TTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred hhcc-CcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHH
Confidence 9864 788888899999999999999999999999999999999999998888888888899999988887889999999
Q ss_pred HhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 338 IYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 338 ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
++.....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 274 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 335 (414)
T 3eiq_A 274 LYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 335 (414)
T ss_dssp HHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEE
T ss_pred HHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 99999889999999999999999999999999999999999999999999999999999986
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=9.7e-44 Score=344.94 Aligned_cols=293 Identities=28% Similarity=0.480 Sum_probs=256.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
.+|+++++++.+.++|.++||..|+|+|.++++.++. |+++++++|||+|||++|++|++..+.....+.++||++||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL--GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTT--TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc--CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 5799999999999999999999999999999999998 69999999999999999999999998776667789999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh----ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 183 YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK----KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
++|+.|+++.++++....+++.+....|+....... ...++|+|+||++|.+++.. ..+.+.+++++|+||||++
T Consensus 86 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH~~ 164 (391)
T 1xti_A 86 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKM 164 (391)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEECSHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEEEeCHHHH
Confidence 999999999999998877778888888886654332 34578999999999987544 4567889999999999999
Q ss_pred hhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccccc-ccccceeEEEEEeCChhhHHHHHHH
Q psy11867 259 IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREE-ESLDNIKQHYVMCKNIDEKFEAVSN 337 (399)
Q Consensus 259 ~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~ 337 (399)
.+..++...+..+....+...|++++|||+++.+..++..++.+|..+.+.... .....+.+.+..+.. ..|...+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 243 (391)
T 1xti_A 165 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEKNRKLFD 243 (391)
T ss_dssp TSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG-GGHHHHHHH
T ss_pred hhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc-hhHHHHHHH
Confidence 753356667778888888899999999999999999999999999888776543 344567777776654 678888889
Q ss_pred HhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 338 IYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 338 ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
++.....+++||||++++.|+.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||
T Consensus 244 ~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 305 (391)
T 1xti_A 244 LLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 305 (391)
T ss_dssp HHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 99888889999999999999999999999999999999999999999999999999999986
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3e-43 Score=342.76 Aligned_cols=291 Identities=35% Similarity=0.591 Sum_probs=253.5
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|++++|++.+.++|.++||..|+++|.++++.+++ ++++++++|||+|||++|++|++..+.....+.++||++|
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~--~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT--GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH--TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc--CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 45799999999999999999999999999999999998 6999999999999999999999999877656778999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
|++|+.|+++.+++++... ++.+....|+....... ...++|+|+||++|.+++.. ....+.+++++|+||||++
T Consensus 98 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADKM 175 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESHHHH
T ss_pred CHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEeCchHh
Confidence 9999999999999998765 66777777776554322 35678999999999887543 4566889999999999998
Q ss_pred hhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHH
Q psy11867 259 IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNI 338 (399)
Q Consensus 259 ~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 338 (399)
.+. .+...+..+...+++..|+++||||++..+..++...+..|..+.+... ....++.+++..+.. ..|...+..+
T Consensus 176 ~~~-~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~k~~~l~~~ 252 (400)
T 1s2m_A 176 LSR-DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEE-RQKLHCLNTL 252 (400)
T ss_dssp SSH-HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCG-GGHHHHHHHH
T ss_pred hhh-chHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEech-hhHHHHHHHH
Confidence 764 5777788888888889999999999999999999999988887765533 445667777776654 6788888888
Q ss_pred hccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 339 YGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 339 l~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.....+++||||++++.++.+++.|...|+.+..+||+|+..+|..+++.|++|+.+|||
T Consensus 253 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 313 (400)
T 1s2m_A 253 FSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 313 (400)
T ss_dssp HHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEE
T ss_pred HhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 8888888999999999999999999999999999999999999999999999999999986
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.5e-44 Score=348.22 Aligned_cols=293 Identities=37% Similarity=0.648 Sum_probs=180.1
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|+++++++.+.++|.++||..|+++|.++++.+++ |+++++++|||+|||++|++|++..+.....++++||++|
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~--~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 97 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE--GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 97 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH--TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC--CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcC
Confidence 45699999999999999999999999999999999998 6999999999999999999999999887667789999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh--ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK--KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
|++|+.|+++.++++.... ++.+....|+....... ....+|+|+||++|.+.+.. ..+.+.+++++|+||||++.
T Consensus 98 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEChHHhh
Confidence 9999999999999988765 67777777776553322 23578999999999988644 45668899999999999998
Q ss_pred hcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHh
Q psy11867 260 ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIY 339 (399)
Q Consensus 260 ~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll 339 (399)
+. ++...+..+...+++..|++++|||+++.+..+...++.+|..+..........++.+.+..+...+.+...+..++
T Consensus 176 ~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (394)
T 1fuu_A 176 SS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLY 254 (394)
T ss_dssp HT-TCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred CC-CcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHH
Confidence 75 78888889999999999999999999999999999999999998887776677788888887776666888888888
Q ss_pred ccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 340 GVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 340 ~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.....+++||||++++.++.+++.|...|+.+..+||+|+..+|..+++.|++|+.+|||
T Consensus 255 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 314 (394)
T 1fuu_A 255 DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILI 314 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred hcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEE
Confidence 887778999999999999999999999999999999999999999999999999999986
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.9e-42 Score=352.97 Aligned_cols=289 Identities=27% Similarity=0.396 Sum_probs=236.0
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC----CCCCeEEEEeCcHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS----IQEPQVLCLAPTYEL 185 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~----~~~~~~lil~Pt~~L 185 (399)
|++.++++|..+||..|+|+|.++++.++.+.++|++++||||||||++|++|+++.+... ..++++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 9999999999999999999999999999953379999999999999999999999887543 235689999999999
Q ss_pred HHHHHHHHHHHhc---cCCCcEEEEEEcCchhhhhh----ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 186 AIQIGEVVAKMGK---HITDLSVRYAVRGENLERNK----KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 186 a~Q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
+.|+++.++++.. ....+.+....++....... ...++|+|+||++|++++.+.....++++++|||||||+|
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 9999999999864 23345667777776654332 3468999999999999876654556889999999999999
Q ss_pred hhcCCchHHHHHHHHhCC-------CCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccc----ccccccceeEEEEEeCC
Q psy11867 259 IATQGHQDFSIRIQKRLP-------SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKR----EEESLDNIKQHYVMCKN 327 (399)
Q Consensus 259 ~~~~~~~~~~~~i~~~l~-------~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~----~~~~~~~i~~~~~~~~~ 327 (399)
.+. +|...+..+...++ ..+|+++||||+++.+..++..++.+|..+.+.. .......+.+.+..+..
T Consensus 188 ~~~-gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 188 LEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp TST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hcC-CCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 875 68887777766553 3789999999999999999999998887765543 22345567777777765
Q ss_pred hhhHH----HHHHHHhcc-CCCCcEEEEecchHhHHHHHHHHHHC---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 328 IDEKF----EAVSNIYGV-VTIGQAMIFCHTRKTAAWLAEKMSKE---GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 328 ~~~k~----~~l~~ll~~-~~~~k~IIF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...+. ..+...+.. ...+++||||++++.|+.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 43332 223333333 45579999999999999999999886 89999999999999999999999999999986
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.1e-42 Score=349.56 Aligned_cols=297 Identities=26% Similarity=0.376 Sum_probs=238.1
Q ss_pred ccccccCC-CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC----CCCeE
Q psy11867 102 VKTFEALH-LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI----QEPQV 176 (399)
Q Consensus 102 ~~~f~~~~-l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~----~~~~~ 176 (399)
...|.+.+ |++.+++++.++||..|+|+|.++++.++.+.++|++++||||||||++|++|+++.+.... .++++
T Consensus 70 ~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~ 149 (563)
T 3i5x_A 70 LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKA 149 (563)
T ss_dssp HHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCE
T ss_pred HHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeE
Confidence 33443333 99999999999999999999999999999533799999999999999999999999875432 34689
Q ss_pred EEEeCcHHHHHHHHHHHHHHhcc---CCCcEEEEEEcCchhhhhh----ccCCcEEEeCchhHHHhhhccccccCCceeE
Q psy11867 177 LCLAPTYELAIQIGEVVAKMGKH---ITDLSVRYAVRGENLERNK----KITEQIIIGTPGKVLDWGLKYRFFDLSKIKV 249 (399)
Q Consensus 177 lil~Pt~~La~Q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~ 249 (399)
|||+||++||.|+++.++++... .....+....++....... ...++|+|+||++|++++.+.....++++++
T Consensus 150 lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 229 (563)
T 3i5x_A 150 VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 229 (563)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCE
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceE
Confidence 99999999999999999997542 2345567777776554332 4478999999999999876654556889999
Q ss_pred EEEechhhHhhcCCchHHHHHHHHhC-------CCCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccc----ccccccce
Q psy11867 250 FVLDEADVMIATQGHQDFSIRIQKRL-------PSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKR----EEESLDNI 318 (399)
Q Consensus 250 lViDEah~l~~~~~~~~~~~~i~~~l-------~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~----~~~~~~~i 318 (399)
+||||||+|.+. +|...+..+...+ +..+|+++||||+++.+..++..++.++..+.+.. .......+
T Consensus 230 lViDEah~l~~~-~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (563)
T 3i5x_A 230 KVLDEADRLLEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERI 308 (563)
T ss_dssp EEEETHHHHTST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTE
T ss_pred EEEeCHHHHhcc-chHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccC
Confidence 999999999875 6888777776554 34789999999999999999999998887765532 22345567
Q ss_pred eEEEEEeCChhhHHH----HHHHHhcc-CCCCcEEEEecchHhHHHHHHHHHHC---CCeEEEEcCCCCHHHHHHHHHHH
Q psy11867 319 KQHYVMCKNIDEKFE----AVSNIYGV-VTIGQAMIFCHTRKTAAWLAEKMSKE---GLNVGLLSGELTVEQRLSILDRF 390 (399)
Q Consensus 319 ~~~~~~~~~~~~k~~----~l~~ll~~-~~~~k~IIF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~~R~~v~~~F 390 (399)
.+.+..+.....+.. .+...+.. ...+++||||++++.|+.++..|... ++.+..+||+|++.+|..+++.|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f 388 (563)
T 3i5x_A 309 DQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF 388 (563)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred ceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Confidence 777777765444332 22233332 45579999999999999999999886 89999999999999999999999
Q ss_pred hcCCCcccC
Q psy11867 391 REGEFKIYS 399 (399)
Q Consensus 391 ~~G~~~ILV 399 (399)
++|+.+|||
T Consensus 389 ~~g~~~vLv 397 (563)
T 3i5x_A 389 KKDESGILV 397 (563)
T ss_dssp HHCSSEEEE
T ss_pred hcCCCCEEE
Confidence 999999986
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.3e-41 Score=322.48 Aligned_cols=286 Identities=30% Similarity=0.511 Sum_probs=245.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
.+|++++|++.+.++|.++||..|+++|.++++.++++ ++++++++|||||||++|++|++..+... .+.++||++|+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLND-EYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHT-CSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 46999999999999999999999999999999999984 47999999999999999999999887653 56789999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh--ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhh
Q psy11867 183 YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK--KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIA 260 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~ 260 (399)
++|+.|+++.++++.... ++.+....|+....... ....+|+|+||++|.+++.. ..+.+.+++++|+||||++.+
T Consensus 84 ~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp HHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc-CCcccccCCEEEEeCchHhhh
Confidence 999999999999987654 56777777776553322 23678999999999988643 456688999999999999986
Q ss_pred cCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhc
Q psy11867 261 TQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG 340 (399)
Q Consensus 261 ~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~ 340 (399)
. ++...+..+...+++..+++++|||++.........++.++..+.... ..++.+.+..+.. ..+...+..++.
T Consensus 162 ~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~l~~~l~ 235 (367)
T 1hv8_A 162 M-GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNE-NERFEALCRLLK 235 (367)
T ss_dssp T-TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCG-GGHHHHHHHHHC
T ss_pred h-chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeCh-HHHHHHHHHHHh
Confidence 4 677888888888889999999999999999999998888877665432 2356667766644 678888888887
Q ss_pred cCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 341 VVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 341 ~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...+++||||++++.++.+++.|...|+.+..+||+++..+|..+++.|++|+.+|||
T Consensus 236 -~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 293 (367)
T 1hv8_A 236 -NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILI 293 (367)
T ss_dssp -STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEE
T ss_pred -cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 4557899999999999999999999999999999999999999999999999999986
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-41 Score=341.77 Aligned_cols=294 Identities=45% Similarity=0.699 Sum_probs=224.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
..|...++++.+.+.+.+.||..|+++|.++++.++++.++++++++|||||||++|++|++..+.....++++|||+|+
T Consensus 119 ~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~ 198 (508)
T 3fho_A 119 XXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPS 198 (508)
T ss_dssp --------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSC
T ss_pred ccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECc
Confidence 34566778999999999999999999999999999984349999999999999999999999999877677899999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC
Q psy11867 183 YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ 262 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~ 262 (399)
++|+.|+++.+++++... .+.+....++.... ......+|+|+||++|.+++.. +.+.+.+++++|+||||++.+..
T Consensus 199 ~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 199 RELARQIMDVVTEMGKYT-EVKTAFGIKDSVPK-GAKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHHHHHHHSTTS-SCCEEC-----------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHHHHHHHhCCcc-CeeEEEEeCCcccc-cccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEechhhhcccC
Confidence 999999999999997654 34444444443322 2234678999999999987543 55678899999999999998755
Q ss_pred CchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccC
Q psy11867 263 GHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVV 342 (399)
Q Consensus 263 ~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~ 342 (399)
++...+..+...+++..|++++|||+++.+..+...+..++..+.+.........+.+.+..+.....+...+..++...
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~ 355 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL 355 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc
Confidence 78888889999999999999999999999999999999999998888777777888888888877788999999999988
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+++||||++++.|+.++..|.+.++.+..+||+++..+|..+++.|++|+.+|||
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLV 412 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLV 412 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 889999999999999999999999999999999999999999999999999999986
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.8e-38 Score=300.08 Aligned_cols=269 Identities=27% Similarity=0.398 Sum_probs=225.8
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~ 189 (399)
|++.+.++|.++||..|+|+|.++++.+++ ++++++++|||+|||++|++|++.. +.++||++|+++|+.|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~--~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQ--GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc--CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHH
Confidence 578999999999999999999999999998 6999999999999999999999874 45699999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEEcCchhhhhh--ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHH
Q psy11867 190 GEVVAKMGKHITDLSVRYAVRGENLERNK--KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDF 267 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~ 267 (399)
++.+++++... +..+....++....... ...++|+|+||++|.+++.. ..+.+.+++++|+||||++.+. ++...
T Consensus 73 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~-~~~~~ 149 (337)
T 2z0m_A 73 ASHIRDIGRYM-DTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEM-GFIDD 149 (337)
T ss_dssp HHHHHHHTTTS-CCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHT-TCHHH
T ss_pred HHHHHHHhhhc-CCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhcc-ccHHH
Confidence 99999998765 56777777776543322 34578999999999987543 4566889999999999999874 78888
Q ss_pred HHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcE
Q psy11867 268 SIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQA 347 (399)
Q Consensus 268 ~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~ 347 (399)
+..++..++...+++++|||++..+......++.++..+... ....++.+.+..+..... .....+.....+++
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 223 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR---SKVQALRENKDKGV 223 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH---HHHHHHHTCCCSSE
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH---HHHHHHHhCCCCcE
Confidence 888889999899999999999999999999998888766433 344566777776654322 22245556677899
Q ss_pred EEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 348 MIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 348 IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
||||++++.++.+++.|. ++..+||+++..+|.+++++|++|+.+|||
T Consensus 224 lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 271 (337)
T 2z0m_A 224 IVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLI 271 (337)
T ss_dssp EEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred EEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 999999999999998885 688999999999999999999999999986
No 17
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.4e-38 Score=289.04 Aligned_cols=218 Identities=27% Similarity=0.406 Sum_probs=188.8
Q ss_pred ccceeeccCCCCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHH
Q psy11867 86 QELEIQRKDPHSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLS 165 (399)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~ 165 (399)
..+.+.+.+.+.| +.+|+++++++.+++++.++||..|+++|.++++.+++ |+|++++||||||||++|++|++.
T Consensus 15 ~~i~~~~~~~p~~---~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--g~~~l~~apTGsGKT~~~~l~~l~ 89 (242)
T 3fe2_A 15 KEITVRGHNCPKP---VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALS--GLDMVGVAQTGSGKTLSYLLPAIV 89 (242)
T ss_dssp HTEEEESSCCCCC---CSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHH--TCCEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEeCCCCCCc---cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCcCHHHHHHHHHHHH
Confidence 3555555555444 67899999999999999999999999999999999998 699999999999999999999999
Q ss_pred hhCCC-----CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhh
Q psy11867 166 RVNPS-----IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGL 237 (399)
Q Consensus 166 ~l~~~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~ 237 (399)
.+... ..++++|||+||++|+.|+++.++++.... ++.+....||....... ..+++|+|+||++|.+++.
T Consensus 90 ~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 168 (242)
T 3fe2_A 90 HINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 168 (242)
T ss_dssp HHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred HHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 87532 357789999999999999999999998776 67788888887654332 4568999999999999865
Q ss_pred ccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccc
Q psy11867 238 KYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKRE 311 (399)
Q Consensus 238 ~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~ 311 (399)
. ....+++++++|+||||++.+. ++...+..+++.+++++|+++||||+++.+.++++.++.+|+.|.++..
T Consensus 169 ~-~~~~~~~~~~lViDEah~l~~~-~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 169 C-GKTNLRRTTYLVLDEADRMLDM-GFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp H-TSCCCTTCCEEEETTHHHHHHT-TCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred c-CCCCcccccEEEEeCHHHHhhh-CcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 4 4567899999999999999975 7999999999999999999999999999999999999999999988754
No 18
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.4e-37 Score=315.62 Aligned_cols=279 Identities=15% Similarity=0.197 Sum_probs=214.7
Q ss_pred ccCCCCHHHHHHHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 106 EALHLKPELLKGVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 106 ~~~~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
.++++++.+.+.|++ +||..|+|+|.++++.+++ |+|+++++|||+|||++|++|++.. .+++|||+|+++
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~--g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~ 95 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMA--GKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLIS 95 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHT--TCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc--CCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHH
Confidence 457899999999998 6999999999999999999 7999999999999999999999852 458999999999
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh---------hccCCcEEEeCchhHHH---hhhc-cccccCCceeEEE
Q psy11867 185 LAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---------KKITEQIIIGTPGKVLD---WGLK-YRFFDLSKIKVFV 251 (399)
Q Consensus 185 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~IlV~Tp~~l~~---~~~~-~~~~~~~~~~~lV 251 (399)
|+.|+.+.++++ ++.+....++...... .....+|+|+||++|.. ++.. .....+.++++||
T Consensus 96 L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 96 LMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 999999999987 4555666666543322 13467899999998742 1110 1234577999999
Q ss_pred EechhhHhhcCC--chHHHHH--HHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeC-
Q psy11867 252 LDEADVMIATQG--HQDFSIR--IQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCK- 326 (399)
Q Consensus 252 iDEah~l~~~~~--~~~~~~~--i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~- 326 (399)
|||||++.+. + |...+.. ++....+..++++||||+++.+...+..++..+..+.+.. .....++...+....
T Consensus 171 iDEAH~is~~-g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~ 248 (591)
T 2v1x_A 171 VDEVHCCSQW-GHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPS 248 (591)
T ss_dssp EETGGGGSTT-CTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCS
T ss_pred EECccccccc-ccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCC
Confidence 9999999753 3 4443322 3333345799999999999998888777765432222221 122344444433332
Q ss_pred ChhhHHHHHHHHhccC-CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 327 NIDEKFEAVSNIYGVV-TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 327 ~~~~k~~~l~~ll~~~-~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
....+...+..++... ..+++||||++++.|+.++..|...|+.+..|||+|++.+|..+++.|++|+++|||
T Consensus 249 ~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlV 322 (591)
T 2v1x_A 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVV 322 (591)
T ss_dssp SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEE
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 2345667777777644 567999999999999999999999999999999999999999999999999999986
No 19
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=282.62 Aligned_cols=205 Identities=32% Similarity=0.466 Sum_probs=182.8
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe
Q psy11867 101 SVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA 180 (399)
Q Consensus 101 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 180 (399)
...+|+++++++.+.++|.++||..|+++|.++++.+++ |+|+++++|||||||++|++|++..+.....++++||++
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~--~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ--GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC--CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 356899999999999999999999999999999999998 699999999999999999999999887666678899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh
Q psy11867 181 PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV 257 (399)
Q Consensus 181 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~ 257 (399)
||++|+.|+++.+++++... ++.+....|+...... ....++|+|+||++|.+++...+.+.+.+++++|+||||+
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 197 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred CCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence 99999999999999998765 6777777887654332 2457899999999999987766667789999999999999
Q ss_pred HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecc
Q psy11867 258 MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLK 309 (399)
Q Consensus 258 l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~ 309 (399)
+.+. ++...+..++..+++.+|+++||||++..+.++++.++.+|..+.+.
T Consensus 198 l~~~-~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 198 ILNM-DFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HHHT-TCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hhcc-ChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9875 88888999999999999999999999999999999999999988654
No 20
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.1e-37 Score=277.16 Aligned_cols=205 Identities=30% Similarity=0.467 Sum_probs=180.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|+++++++.+.+.|.++||..|+++|.++++.+++ |+|+++++|||||||++|++|++..+.....++++||++|
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRC--GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 56799999999999999999999999999999999998 6999999999999999999999999876666789999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh--ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK--KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
|++|+.|+++.+++++....++.+....|+....... ...++|+|+||++|.+++. .+.+.+.+++++|+||||++.
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~-~~~~~~~~~~~lViDEah~~~ 179 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIE-LDYLNPGSIRLFILDEADKLL 179 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHH-TTSSCGGGCCEEEESSHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHh-cCCcccccCCEEEeCCchHhh
Confidence 9999999999999998776678888888886654332 3467999999999998864 355678899999999999998
Q ss_pred hcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecc
Q psy11867 260 ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLK 309 (399)
Q Consensus 260 ~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~ 309 (399)
+.+.+...+..+.+.++..+|+++||||+++.+.+++..++.+|..+.+.
T Consensus 180 ~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 180 EEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp STTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred cCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 75338889999999999999999999999999999999999999887653
No 21
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.6e-37 Score=269.79 Aligned_cols=200 Identities=33% Similarity=0.566 Sum_probs=178.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
.+|++++|++.++++|.++||..|+++|.++++.+++ |+|+++++|||||||++|++|++..+.....++++||++||
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 80 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALS--GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHT--TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHcc--CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCc
Confidence 4699999999999999999999999999999999998 69999999999999999999999998776677899999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 183 YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
++|+.|+++.++++....+++.+....|+....... ...++|+|+||+++.+.+.+ +...+.+++++|+||||++.
T Consensus 81 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~ 159 (206)
T 1vec_A 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKLL 159 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHhH
Confidence 999999999999998877677888888887654332 45678999999999888643 45678899999999999998
Q ss_pred hcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEE
Q psy11867 260 ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLII 306 (399)
Q Consensus 260 ~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i 306 (399)
+. ++...+..+...+++++|+++||||+++.+.++++.++.+|..+
T Consensus 160 ~~-~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 160 SQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp ST-TTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hh-CcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 64 78888899999999899999999999999999999999999875
No 22
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-37 Score=283.35 Aligned_cols=217 Identities=31% Similarity=0.493 Sum_probs=176.9
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC---------C
Q psy11867 101 SVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS---------I 171 (399)
Q Consensus 101 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~---------~ 171 (399)
++.+|+++++++.++++|..+||..|+++|.++++.+++ |+|+++++|||||||++|++|++..+... .
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~--~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 98 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILE--HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKT 98 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCCChHHHHHHHHHHHHHHhhcccccccccc
Confidence 467899999999999999999999999999999999998 69999999999999999999999887532 2
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCcee
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIK 248 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~ 248 (399)
.++++|||+||++|+.|+++.+++++... ++.+....||....... ...++|+|+||++|.+++.. ..+.+++++
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~ 176 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCK 176 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCC
Confidence 34689999999999999999999998765 56777777776543322 45679999999999998654 456788999
Q ss_pred EEEEechhhHhhcCCchHHHHHHHHh--CCC--CCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEE
Q psy11867 249 VFVLDEADVMIATQGHQDFSIRIQKR--LPS--DCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHY 322 (399)
Q Consensus 249 ~lViDEah~l~~~~~~~~~~~~i~~~--l~~--~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~ 322 (399)
++|+||||++.+. ++...+..++.. ++. .+|+++||||+++.+..+++.++.+|..+.++.......+++|.+
T Consensus 177 ~lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~~ 253 (253)
T 1wrb_A 177 YIVLDEADRMLDM-GFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253 (253)
T ss_dssp EEEEETHHHHHHT-TCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------------
T ss_pred EEEEeCHHHHHhC-chHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceecC
Confidence 9999999999875 788888888884 344 689999999999999999999999999999888777777777653
No 23
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.2e-37 Score=275.12 Aligned_cols=203 Identities=28% Similarity=0.428 Sum_probs=172.5
Q ss_pred cccccccc-CCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC------CC
Q psy11867 100 YSVKTFEA-LHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS------IQ 172 (399)
Q Consensus 100 ~~~~~f~~-~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~------~~ 172 (399)
.+..+|++ +++++.++++|.++||..|+++|.++++.+++ |+|+++++|||||||++|++|++..+... ..
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQ--GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 34677888 79999999999999999999999999999998 79999999999999999999999887532 25
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCceeE
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKV 249 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~ 249 (399)
++++||++||++|+.|+++.++++.. .++.+....|+...... ...+++|+|+||++|.+++.. ..+.++++++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~ 170 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITY 170 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceE
Confidence 67899999999999999999999863 26677777777654332 245679999999999987543 5667899999
Q ss_pred EEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEec
Q psy11867 250 FVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKL 308 (399)
Q Consensus 250 lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~ 308 (399)
+|+||||++.+. ++...+..++..+++++|+++||||+++.+.++++.++.+|+.+.+
T Consensus 171 lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 171 LVIDEADKMLDM-EFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp EEECCHHHHHHT-TCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred EEEECHHHHhcc-chHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999875 7899999999999999999999999999999999999999988753
No 24
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=8.3e-37 Score=273.03 Aligned_cols=205 Identities=31% Similarity=0.536 Sum_probs=179.7
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|+++++++.+++++.++||..|+++|.++++.+++ |+|+++++|||||||++|++|++..+.....++++||++|
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 80 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALR--GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAP 80 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH--TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcC
Confidence 35799999999999999999999999999999999998 6999999999999999999999999887666789999999
Q ss_pred cHHHHHHHHHHHHHHhccCC---CcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEech
Q psy11867 182 TYELAIQIGEVVAKMGKHIT---DLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEA 255 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEa 255 (399)
|++|+.|+++.++++..... ++.+....|+....... ...++|+|+||+++.+++.. +.+.+.+++++|+|||
T Consensus 81 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEa 159 (219)
T 1q0u_A 81 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEA 159 (219)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSH
T ss_pred cHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCc
Confidence 99999999999999987653 46677777777654433 34678999999999988644 5567889999999999
Q ss_pred hhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccc
Q psy11867 256 DVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKR 310 (399)
Q Consensus 256 h~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~ 310 (399)
|++.+. ++...+..+...+++++|+++||||+++++.++++.++.+|..+.+..
T Consensus 160 h~~~~~-~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 160 DLMLDM-GFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHHT-TCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hHHhhh-ChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999875 788888999999999999999999999999999999999999887653
No 25
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1e-36 Score=275.88 Aligned_cols=203 Identities=37% Similarity=0.621 Sum_probs=173.8
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|+++++++.++++|.++||..|+++|.++++.+++ |+|+++++|||||||++|++|++..+.....++++||++|
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~--~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIK--GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT--TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 56799999999999999999999999999999999998 6999999999999999999999999876666789999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh----ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK----KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV 257 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~ 257 (399)
|++|+.|+++.+++++... ++.+....|+....... ...++|+|+||++|.+++.. +.+.+.+++++|+||||+
T Consensus 107 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHHH
T ss_pred cHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEECCchH
Confidence 9999999999999998765 56666777776543322 23479999999999998644 556788999999999999
Q ss_pred HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecc
Q psy11867 258 MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLK 309 (399)
Q Consensus 258 l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~ 309 (399)
+.+. ++...+..+++.++..+|+++||||+++.+.++++.++.+|..+.++
T Consensus 185 ~~~~-~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 185 MLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHT-TCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hhcc-CcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9874 78888889999999999999999999999999999999999988765
No 26
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=9.3e-37 Score=306.33 Aligned_cols=276 Identities=14% Similarity=0.205 Sum_probs=214.5
Q ss_pred cccccCCCCHHHHHHHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 103 KTFEALHLKPELLKGVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
.+|++++|++.+.+.|.+ +||..|+|+|.++++.+++ |+|+++++|||+|||++|++|++.. ..++|||+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~--g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLS--GRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc--CCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECC
Confidence 579999999999999998 8999999999999999998 6999999999999999999999853 357999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEec
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDE 254 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDE 254 (399)
+++|+.|+.+.++.+ ++.+....++..... ...+..+|+|+||++|..... ...+...++++|||||
T Consensus 74 ~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~-~~~l~~~~~~~vViDE 147 (523)
T 1oyw_A 74 LISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNF-LEHLAHWNPVLLAVDE 147 (523)
T ss_dssp CHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTH-HHHHTTSCEEEEEESS
T ss_pred hHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHH-HHHHhhCCCCEEEEeC
Confidence 999999999999886 345555555543321 124567999999999964311 1233457899999999
Q ss_pred hhhHhhcC-CchHHHH---HHHHhCCCCCcEEEEEeeCChhHHHHHHh-h-CCCCeEEecccccccccceeEEEEEeCCh
Q psy11867 255 ADVMIATQ-GHQDFSI---RIQKRLPSDCQIMLFSATYDKEVMEFAQD-M-VPNPLIIKLKREEESLDNIKQHYVMCKNI 328 (399)
Q Consensus 255 ah~l~~~~-~~~~~~~---~i~~~l~~~~q~l~~SAT~~~~v~~~~~~-~-~~~p~~i~~~~~~~~~~~i~~~~~~~~~~ 328 (399)
||++.+.+ .|...+. .+...+ ++.+++++|||.++.+...+.. + +.+|..+.... ...++...+. ..
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~~l~~~v~--~~- 220 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNIRYMLM--EK- 220 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC---CCTTEEEEEE--EC-
T ss_pred ccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC---CCCceEEEEE--eC-
Confidence 99997531 1444333 334444 4689999999999887654433 3 34555443221 2234433332 22
Q ss_pred hhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 329 DEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 329 ~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+...+..++.....+++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 221 ~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlV 291 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVV 291 (523)
T ss_dssp SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 45677788888877778999999999999999999999999999999999999999999999999999986
No 27
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-36 Score=271.61 Aligned_cols=203 Identities=31% Similarity=0.537 Sum_probs=177.9
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
..+|++++|++.++++|.++||..|+++|.++++.+++ ++|+++++|||+|||++|++|++..+.....++++||++|
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 90 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL--GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 90 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECS
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeC
Confidence 35699999999999999999999999999999999998 6999999999999999999999999877656678999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh----ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK----KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV 257 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~ 257 (399)
|++|+.|+++.++++....+++.+....|+....... ...++|+|+||+++.+++.. ..+.+.+++++|+||||+
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~ 169 (220)
T 1t6n_A 91 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDK 169 (220)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEESHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEEcCHHH
Confidence 9999999999999998877678888888876543322 34569999999999988644 556788999999999999
Q ss_pred HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEe
Q psy11867 258 MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIK 307 (399)
Q Consensus 258 l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~ 307 (399)
+.+..++...+..+.+.+++.+|+++||||+++.+.++++.++.+|..+.
T Consensus 170 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 170 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 98633677778888888888999999999999999999999999998775
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.1e-37 Score=301.98 Aligned_cols=261 Identities=16% Similarity=0.159 Sum_probs=202.8
Q ss_pred HHHHHHHH-cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHH
Q psy11867 113 ELLKGVYE-MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGE 191 (399)
Q Consensus 113 ~l~~~l~~-~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~ 191 (399)
.+.+.+++ .|| .|+|+|.++++.+++ |+|++++||||||||++|++|++..+. .++++|||+||++|+.|+++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~--~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQ--GKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTT--TCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhc--CCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHH
Confidence 44455555 455 899999999999998 699999999999999999999988773 45789999999999999999
Q ss_pred HHHHHhccCCCcEEEEEEcCchhhh---h----hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhc---
Q psy11867 192 VVAKMGKHITDLSVRYAVRGENLER---N----KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIAT--- 261 (399)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~--- 261 (399)
.+++++. .++.+....|+..... . ....++|+|+||++|.+++.. +.+.+++++|+||||++...
T Consensus 83 ~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 83 RLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccch
Confidence 9999877 4788888888876521 1 133489999999999887642 66779999999999876531
Q ss_pred -------CCchHH-HHHHHHhCC-----------CCCcEEEEEee-CChhHH-HHHHhhCCCCeEEecccccccccceeE
Q psy11867 262 -------QGHQDF-SIRIQKRLP-----------SDCQIMLFSAT-YDKEVM-EFAQDMVPNPLIIKLKREEESLDNIKQ 320 (399)
Q Consensus 262 -------~~~~~~-~~~i~~~l~-----------~~~q~l~~SAT-~~~~v~-~~~~~~~~~p~~i~~~~~~~~~~~i~~ 320 (399)
.+|... +..++..++ ...|+++|||| .+..+. .+...++. +.+........++.+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 233 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchh
Confidence 356655 667777665 78999999999 565543 23333222 233344455677888
Q ss_pred EEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEE-EEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 321 HYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVG-LLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 321 ~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~-~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+..+. +...+..++.. ..+++||||++++.|+.++..|...|+.+. .+||+ +|. ++.|++|+++|||
T Consensus 234 ~~~~~~----~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLv 302 (414)
T 3oiy_A 234 VRISSR----SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILI 302 (414)
T ss_dssp EEESSC----CHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEE
T ss_pred eeeccC----HHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEE
Confidence 887663 34455566655 338999999999999999999999999998 99995 444 9999999999986
No 29
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=273.73 Aligned_cols=207 Identities=29% Similarity=0.435 Sum_probs=179.5
Q ss_pred ccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC----CCCCe
Q psy11867 100 YSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS----IQEPQ 175 (399)
Q Consensus 100 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~----~~~~~ 175 (399)
.+..+|+++++++.++++|.++||..|+++|.++++.+++ |+|+++++|||||||++|++|++..+... ..+++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~--~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 99 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQ--GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLG 99 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCce
Confidence 3467899999999999999999999999999999999998 69999999999999999999999876421 24678
Q ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh--hccCCcEEEeCchhHHHhhhccccccCCceeEEEEe
Q psy11867 176 VLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN--KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLD 253 (399)
Q Consensus 176 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViD 253 (399)
+||++||++|+.|+++.+++++... ++.+....|+...... ....++|+|+||++|.+++.....+.+.+++++|+|
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 9999999999999999999998765 5777777777654332 235679999999999998766556778899999999
Q ss_pred chhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccc
Q psy11867 254 EADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKR 310 (399)
Q Consensus 254 Eah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~ 310 (399)
|||++.+. ++...+..++..+++.+|+++||||+++.+.++++.++.+|..+.+..
T Consensus 179 Eah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 179 EADRILDM-GFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp THHHHHHT-TTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred ChHHHhcC-CcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999874 788889999999999999999999999999999999999999887653
No 30
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=276.15 Aligned_cols=221 Identities=24% Similarity=0.407 Sum_probs=181.7
Q ss_pred cccceeeccCCCCCCccccccccC----CCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 85 KQELEIQRKDPHSPLYSVKTFEAL----HLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+.+.+.+.+.+.|. .+|+++ ++++.+++++.++||..|+++|.++++.+++ |+|++++||||||||++|+
T Consensus 10 ~~~i~~~~~~~p~~~---~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 10 KHKIHVQGTDLPDPI---ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLH--GRELLASAPTGSGKTLAFS 84 (245)
T ss_dssp HTTEEEESSSCCCCC---SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHH
T ss_pred hCceEecCCCCCCcc---cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCCEEEECCCCCcHHHHHH
Confidence 456667667766664 456665 8999999999999999999999999999998 6999999999999999999
Q ss_pred HHHHHhhCCC-CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh----hccCCcEEEeCchhHHHh
Q psy11867 161 LTMLSRVNPS-IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN----KKITEQIIIGTPGKVLDW 235 (399)
Q Consensus 161 l~il~~l~~~-~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~IlV~Tp~~l~~~ 235 (399)
+|++..+... ..++++||++||++|+.|+++.+++++... ++.+....++...... ....++|+|+||++|.++
T Consensus 85 l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~ 163 (245)
T 3dkp_A 85 IPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYL 163 (245)
T ss_dssp HHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHH
T ss_pred HHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHH
Confidence 9999988643 356789999999999999999999998765 5565555555433222 245678999999999998
Q ss_pred hhccc-cccCCceeEEEEechhhHhhc--CCchHHHHHHHHhC-CCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccc
Q psy11867 236 GLKYR-FFDLSKIKVFVLDEADVMIAT--QGHQDFSIRIQKRL-PSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKRE 311 (399)
Q Consensus 236 ~~~~~-~~~~~~~~~lViDEah~l~~~--~~~~~~~~~i~~~l-~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~ 311 (399)
+.... .+.+.+++++|+||||++.+. .++...+..++..+ +.+.|+++||||+++++.++++.++.+|+.+.++..
T Consensus 164 l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 164 LKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred HHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 76543 467899999999999999874 36777777777665 457899999999999999999999999999987754
No 31
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=5.2e-36 Score=268.65 Aligned_cols=206 Identities=40% Similarity=0.674 Sum_probs=175.1
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
+.+|+++++++.+++.+.++||..|+++|.++++.+++ |+|+++++|||+|||++|++|++..+.....++++||++|
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE--GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 90 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc--CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence 56799999999999999999999999999999999998 6999999999999999999999999877767789999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh--ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK--KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
|++|+.|+++.++++.... ++.+....|+....... ...++|+|+||++|.+++.. ..+.+.+++++|+||||++.
T Consensus 91 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 91 TRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEML 168 (224)
T ss_dssp SHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTTCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHH
T ss_pred CHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh-CCcchhhCcEEEEcChhHHh
Confidence 9999999999999998765 67777777776543332 23479999999999988654 46678899999999999998
Q ss_pred hcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEeccccc
Q psy11867 260 ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREE 312 (399)
Q Consensus 260 ~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~ 312 (399)
+. ++...+..+...+++.+|+++||||+++.+.++++.++.+|..+.+...+
T Consensus 169 ~~-~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~ 220 (224)
T 1qde_A 169 SS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE 220 (224)
T ss_dssp HT-TCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-----
T ss_pred hh-hhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCc
Confidence 74 78888889999999999999999999999999999999999998776543
No 32
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.9e-36 Score=316.00 Aligned_cols=280 Identities=21% Similarity=0.189 Sum_probs=213.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhh-hhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPT-LLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~-ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
+|++++|++.+.+.+.+.||..|+++|.++++. +.. ++|++++||||||||++|.+|++..+.. .+.+++|++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~~l~i~P~ 77 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILE--GKNALISIPTASGKTLIAEIAMVHRILT--QGGKAVYIVPL 77 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGG--TCEEEEECCGGGCHHHHHHHHHHHHHHH--HCSEEEEECSS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCcEEEEcCCccHHHHHHHHHHHHHHHh--CCCEEEEEcCc
Confidence 589999999999999999999999999999998 666 7999999999999999999999987753 25689999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC
Q psy11867 183 YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ 262 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~ 262 (399)
++|+.|+++.++++... ++.+....|+...........+|+|+||+++..++.. ....+++++++|+||||++.+.
T Consensus 78 raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~- 153 (720)
T 2zj8_A 78 KALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIGSR- 153 (720)
T ss_dssp GGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCT-
T ss_pred HHHHHHHHHHHHHHHhc--CCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccCCC-
Confidence 99999999999766543 6777777776655444445789999999999887654 3445789999999999999753
Q ss_pred CchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEE-----EEeCC-----hhhHH
Q psy11867 263 GHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHY-----VMCKN-----IDEKF 332 (399)
Q Consensus 263 ~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~-----~~~~~-----~~~k~ 332 (399)
.+...+..++..++.+.|++++|||+++ ...+...+ ..+. +..... +..+...+ +.+.. ...+.
T Consensus 154 ~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r---p~~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T 2zj8_A 154 DRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAEL-IVSDWR---PVKLRRGVFYQGFVTWEDGSIDRFSSWE 227 (720)
T ss_dssp TTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEEE-EECCCC---SSEEEEEEEETTEEEETTSCEEECSSTT
T ss_pred cccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCcc-cCCCCC---CCcceEEEEeCCeeeccccchhhhhHHH
Confidence 5666677777777668999999999986 34444433 2211 111100 00111111 01111 13344
Q ss_pred HHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC---------------------------------CCeEEEEcCCCC
Q psy11867 333 EAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE---------------------------------GLNVGLLSGELT 379 (399)
Q Consensus 333 ~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~---------------------------------g~~v~~lhg~~~ 379 (399)
..+.+.+. ..+++||||++++.|+.++..|.+. ...+..+||+|+
T Consensus 228 ~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~ 305 (720)
T 2zj8_A 228 ELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG 305 (720)
T ss_dssp HHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC
Confidence 55555554 3479999999999999999998753 124999999999
Q ss_pred HHHHHHHHHHHhcCCCcccC
Q psy11867 380 VEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 380 ~~~R~~v~~~F~~G~~~ILV 399 (399)
+.+|..+++.|++|+++|||
T Consensus 306 ~~~R~~v~~~f~~g~~~vlv 325 (720)
T 2zj8_A 306 RDERVLVEENFRKGIIKAVV 325 (720)
T ss_dssp HHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHCCCCeEEE
Confidence 99999999999999999986
No 33
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-35 Score=308.98 Aligned_cols=281 Identities=17% Similarity=0.152 Sum_probs=213.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
.+|++++|++.+.+.+.++||..|+++|.++++.++.. +++++++||||||||++|.++++..+.. .+.+++|++|+
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~-~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~il~i~P~ 84 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLE-GNRLLLTSPTGSGKTLIAEMGIISFLLK--NGGKAIYVTPL 84 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTT-TCCEEEECCTTSCHHHHHHHHHHHHHHH--SCSEEEEECSC
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcC-CCcEEEEcCCCCcHHHHHHHHHHHHHHH--CCCeEEEEeCc
Confidence 46999999999999999999999999999999994433 7999999999999999999999987753 24689999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC
Q psy11867 183 YELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ 262 (399)
Q Consensus 183 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~ 262 (399)
++||.|+++.++.+... ++.+...+|+...........+|+|+||++|..++.. ....++++++||+||||.+.+.
T Consensus 85 r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~- 160 (715)
T 2va8_A 85 RALTNEKYLTFKDWELI--GFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVLDELHYLNDP- 160 (715)
T ss_dssp HHHHHHHHHHHGGGGGG--TCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEECSGGGGGCT-
T ss_pred HHHHHHHHHHHHHhhcC--CCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEEechhhcCCc-
Confidence 99999999999655432 5677777776554433334689999999999988655 3445889999999999998653
Q ss_pred CchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeE------------EEEEeC----
Q psy11867 263 GHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQ------------HYVMCK---- 326 (399)
Q Consensus 263 ~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~------------~~~~~~---- 326 (399)
.+...+..++..++ +.|++++|||+++ ...+...+. .+. +...... . .+.. .+....
T Consensus 161 ~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~~~r~--~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (715)
T 2va8_A 161 ERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLG-AEP-VATNWRP--V-PLIEGVIYPERKKKEYNVIFKDNTTK 233 (715)
T ss_dssp TTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHT-CEE-EECCCCS--S-CEEEEEEEECSSTTEEEEEETTSCEE
T ss_pred ccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhC-CCc-cCCCCCC--C-CceEEEEecCCcccceeeecCcchhh
Confidence 56666666666665 8999999999985 345554432 211 1111000 0 0111 111111
Q ss_pred ---ChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCC-----------------------------------
Q psy11867 327 ---NIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEG----------------------------------- 368 (399)
Q Consensus 327 ---~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g----------------------------------- 368 (399)
..+.+...+.+.+. ..+++||||++++.|+.++..|.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 311 (715)
T 2va8_A 234 KVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLI 311 (715)
T ss_dssp EEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 12445666666654 45899999999999999999998642
Q ss_pred -CeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 369 -LNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 369 -~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+..+||+|+..+|..+++.|++|+++|||
T Consensus 312 ~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlv 343 (715)
T 2va8_A 312 SKGVAYHHAGLSKALRDLIEEGFRQRKIKVIV 343 (715)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCSCEEE
T ss_pred hcCEEEECCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 2489999999999999999999999999986
No 34
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=275.81 Aligned_cols=198 Identities=30% Similarity=0.412 Sum_probs=170.0
Q ss_pred cccccCC--CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC----CCCCeE
Q psy11867 103 KTFEALH--LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS----IQEPQV 176 (399)
Q Consensus 103 ~~f~~~~--l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~----~~~~~~ 176 (399)
.+|++++ +++.++++|.++||..|+++|.++++.++. |+|++++||||||||++|++|++..+... ..+.++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 129 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE--GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGV 129 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHH--TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC--CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceE
Confidence 4566666 999999999999999999999999999999 69999999999999999999999877532 246789
Q ss_pred EEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh---ccCCcEEEeCchhHHHhhhccccccCCceeEEEEe
Q psy11867 177 LCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLD 253 (399)
Q Consensus 177 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViD 253 (399)
||++||++||.|+++.+++++... +..+....|+....... ..+++|+|+||+++.+++.....+.+++++++|+|
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 999999999999999999998775 56777777776554332 34689999999999998877666788999999999
Q ss_pred chhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCe
Q psy11867 254 EADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPL 304 (399)
Q Consensus 254 Eah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~ 304 (399)
|||++.+. ++...+..+++.++..+|+++||||+++.+.++++.++.++.
T Consensus 209 Eah~l~~~-~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 209 EADRILDV-GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SHHHHHHT-TCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ChHHHhhh-hHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999975 799999999999999999999999999999999999887543
No 35
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=323.71 Aligned_cols=278 Identities=14% Similarity=0.125 Sum_probs=216.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY 183 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 183 (399)
.|..+++++.+...+...++..|+++|.++++.+++ |++++++||||||||++|++|++..+.. +.++||++||+
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~--g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~Ptr 237 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDR--GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIK 237 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTT--TCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSH
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHc--CCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcH
Confidence 566777777777777777888999999999999988 7999999999999999999999998843 56899999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCC
Q psy11867 184 ELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQG 263 (399)
Q Consensus 184 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~ 263 (399)
+|+.|+++.+++++. .+.+..|+... ....+|+|+||++|.+++.. ....++++++|||||||+|.+. +
T Consensus 238 aLa~Q~~~~l~~~~~-----~VglltGd~~~----~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVIDEaH~l~d~-~ 306 (1108)
T 3l9o_A 238 ALSNQKYRELLAEFG-----DVGLMTGDITI----NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDK-E 306 (1108)
T ss_dssp HHHHHHHHHHHHHTS-----SEEEECSSCBC----CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEETGGGTTSH-H
T ss_pred HHHHHHHHHHHHHhC-----CccEEeCcccc----CCCCCEEEeChHHHHHHHHc-CccccccCCEEEEhhhhhcccc-c
Confidence 999999999999864 34556666543 23578999999999998765 3445789999999999999864 6
Q ss_pred chHHHHHHHHhCCCCCcEEEEEeeCChh--HHHHHHhhCCCCeEEecccccccccceeEEEEEeCC---------h----
Q psy11867 264 HQDFSIRIQKRLPSDCQIMLFSATYDKE--VMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKN---------I---- 328 (399)
Q Consensus 264 ~~~~~~~i~~~l~~~~q~l~~SAT~~~~--v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~---------~---- 328 (399)
+...+..++..+++..|+++||||+++. +..++.....+|..+....... ..+.++++.... .
T Consensus 307 rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~~~~~~ 384 (1108)
T 3l9o_A 307 RGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFR 384 (1108)
T ss_dssp HHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEETTTEEC
T ss_pred hHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeeccccchh
Confidence 7777888899999999999999999874 4466666666666554332221 112222211100 0
Q ss_pred -----------------------------------------hhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC
Q psy11867 329 -----------------------------------------DEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE 367 (399)
Q Consensus 329 -----------------------------------------~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~ 367 (399)
..+...+...+.....+++||||++++.|+.++..|...
T Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 385 EENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp HHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred hhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 223334445555556679999999999999999998653
Q ss_pred CCe---------------------------------------EEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 368 GLN---------------------------------------VGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 368 g~~---------------------------------------v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
++. ++.+||+|++.+|..+++.|++|.++|||
T Consensus 465 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLV 535 (1108)
T 3l9o_A 465 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 535 (1108)
T ss_dssp HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEE
Confidence 222 89999999999999999999999999986
No 36
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.9e-35 Score=259.59 Aligned_cols=199 Identities=34% Similarity=0.550 Sum_probs=173.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC---CCCCeEEEEe
Q psy11867 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS---IQEPQVLCLA 180 (399)
Q Consensus 104 ~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~---~~~~~~lil~ 180 (399)
+|+++++++.+++++.++||..|+++|.++++.+++ |+|+++++|||||||++|++|++..+... ..++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~--~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALE--GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcC--CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE
Confidence 589999999999999999999999999999999998 69999999999999999999999988642 3567899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh
Q psy11867 181 PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV 257 (399)
Q Consensus 181 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~ 257 (399)
||++|+.|+++.++++... +.+....|+...... ....++|+|+||+++.+++.. +.+.+.+++++|+||||+
T Consensus 80 P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHH
T ss_pred CCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhH
Confidence 9999999999999998754 456666676543222 235689999999999988654 566788999999999999
Q ss_pred HhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecc
Q psy11867 258 MIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLK 309 (399)
Q Consensus 258 l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~ 309 (399)
+.+. ++...+..++..+++.+|+++||||+++.+.++++.++.+|..+.+.
T Consensus 156 ~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 156 MLSM-GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHHT-TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hhcc-chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 9874 78888899999999999999999999999999999999999988654
No 37
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.3e-36 Score=314.56 Aligned_cols=279 Identities=18% Similarity=0.137 Sum_probs=207.1
Q ss_pred ccccCC--CCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 104 TFEALH--LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 104 ~f~~~~--l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
+|++++ |++.+.+.+.++||..|+++|.++++.++. ++|++++||||||||++|.+|++..+.. +.+++|++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~--~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P 76 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFS--GKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVP 76 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTT--CSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhC--CCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeC
Confidence 477888 999999999999999999999999999887 7999999999999999999999988754 467999999
Q ss_pred cHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhc
Q psy11867 182 TYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIAT 261 (399)
Q Consensus 182 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~ 261 (399)
+++||.|+++.++.+... ++.+....|+...........+|+|+||+++..++.+ ....++++++||+||||++.+.
T Consensus 77 ~r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l~~~ 153 (702)
T 2p6r_A 77 LRALAGEKYESFKKWEKI--GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSE 153 (702)
T ss_dssp SHHHHHHHHHHHTTTTTT--TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGGGCT
T ss_pred cHHHHHHHHHHHHHHHhc--CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeecCCC
Confidence 999999999999655432 6777777777654443345789999999999988655 3445889999999999998753
Q ss_pred CCchHHHHHHHHh---CCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEE------EEeCCh----
Q psy11867 262 QGHQDFSIRIQKR---LPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHY------VMCKNI---- 328 (399)
Q Consensus 262 ~~~~~~~~~i~~~---l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~------~~~~~~---- 328 (399)
++...+..++.. +.++.|++++|||+++ ...+...+ ..+. +...... ..+...+ ......
T Consensus 154 -~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~~ 226 (702)
T 2p6r_A 154 -KRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADY-YVSDWRP---VPLVEGVLCEGTLELFDGAFSTS 226 (702)
T ss_dssp -TTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEE-EECCCCS---SCEEEEEECSSEEEEEETTEEEE
T ss_pred -CcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCc-ccCCCCC---ccceEEEeeCCeeeccCcchhhh
Confidence 455545444443 3678999999999986 45555543 3222 1111110 0111111 011110
Q ss_pred --hhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHC------------------------------CCeEEEEcC
Q psy11867 329 --DEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE------------------------------GLNVGLLSG 376 (399)
Q Consensus 329 --~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~------------------------------g~~v~~lhg 376 (399)
..+...+.+.+. ..+++||||++++.|+.++..|... +..+..+||
T Consensus 227 ~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 227 RRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp EECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 014555555554 4579999999999999999988752 235889999
Q ss_pred CCCHHHHHHHHHHHhcCCCcccC
Q psy11867 377 ELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 377 ~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+|++++|..+++.|++|+++|||
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlv 327 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVV 327 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEE
Confidence 99999999999999999999986
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-34 Score=322.26 Aligned_cols=298 Identities=16% Similarity=0.174 Sum_probs=215.7
Q ss_pred CCCCccccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCe
Q psy11867 96 HSPLYSVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQ 175 (399)
Q Consensus 96 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~ 175 (399)
+.++.+...+.-..|.+...++++..+|..++|+|.++++.++.+ +.|++++||||||||++|.+|+++.+... .+.+
T Consensus 897 ~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~-~~nvlv~APTGSGKTliaelail~~l~~~-~~~k 974 (1724)
T 4f92_B 897 PTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNS-DDNVFVGAPTGSGKTICAEFAILRMLLQS-SEGR 974 (1724)
T ss_dssp CCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSC-CSCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCC
T ss_pred CCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcC-CCcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCE
Confidence 344444444444457788899999999999999999999999976 78999999999999999999999988654 4567
Q ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccc-cCCceeEEEEec
Q psy11867 176 VLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFF-DLSKIKVFVLDE 254 (399)
Q Consensus 176 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~-~~~~~~~lViDE 254 (399)
+||++|+++||.|+++.+++......++++....|+...........+|+|+||+++..++.++... .++++++||+||
T Consensus 975 avyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE 1054 (1724)
T 4f92_B 975 CVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDE 1054 (1724)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECC
T ss_pred EEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeec
Confidence 9999999999999999987654333377888888887665555566799999999997776554332 478999999999
Q ss_pred hhhHhhcCCchHHHHH-------HHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCC-eEEecccccccccceeEEEEEeC
Q psy11867 255 ADVMIATQGHQDFSIR-------IQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNP-LIIKLKREEESLDNIKQHYVMCK 326 (399)
Q Consensus 255 ah~l~~~~~~~~~~~~-------i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p-~~i~~~~~~~~~~~i~~~~~~~~ 326 (399)
+|++.+. ....+.. +...+++++|+++||||+++ ..+++..+-.++ ..+.+..... +..+..++....
T Consensus 1055 ~H~l~d~--rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~R-PvpL~~~i~~~~ 1130 (1724)
T 4f92_B 1055 VHLIGGE--NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVR-PVPLELHIQGFN 1130 (1724)
T ss_dssp GGGGGST--THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGC-SSCEEEEEEEEC
T ss_pred hhhcCCC--CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCC-CCCeEEEEEecc
Confidence 9998753 2222222 22345778999999999986 356666554332 2222222222 222333333322
Q ss_pred Chh--hHH----HHHHHHh-ccCCCCcEEEEecchHhHHHHHHHHHHC--------------------------------
Q psy11867 327 NID--EKF----EAVSNIY-GVVTIGQAMIFCHTRKTAAWLAEKMSKE-------------------------------- 367 (399)
Q Consensus 327 ~~~--~k~----~~l~~ll-~~~~~~k~IIF~~s~~~a~~l~~~L~~~-------------------------------- 367 (399)
... .+. ..+...+ .....+++||||++++.|+.+|..|...
T Consensus 1131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~ 1210 (1724)
T 4f92_B 1131 ISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKE 1210 (1724)
T ss_dssp CCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHH
T ss_pred CCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHH
Confidence 211 111 1122222 3345579999999999999988776431
Q ss_pred --CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 368 --GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 368 --g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...++.+||||++.+|..+++.|++|.++|||
T Consensus 1211 ~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLv 1244 (1724)
T 4f92_B 1211 TLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVV 1244 (1724)
T ss_dssp HHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEE
T ss_pred HHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 23589999999999999999999999999986
No 39
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=8.7e-35 Score=302.78 Aligned_cols=172 Identities=16% Similarity=0.067 Sum_probs=130.6
Q ss_pred HHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC--CCCeEEEEeCcHHHHHHHHHH
Q psy11867 115 LKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI--QEPQVLCLAPTYELAIQIGEV 192 (399)
Q Consensus 115 ~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~--~~~~~lil~Pt~~La~Q~~~~ 192 (399)
...+..+||..|+++|.++++.+++ |+|+++++|||+|||++|++|+++.+.... .+.++|||+||++|+.|+.+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~--g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMK--GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHT--TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHc--CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHH
Confidence 3556789999999999999999998 699999999999999999999998875432 236899999999999999999
Q ss_pred HHHHhccCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHH
Q psy11867 193 VAKMGKHITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSI 269 (399)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~ 269 (399)
+++++... ++.+....|+...... .....+|+|+||++|.+++.......+.+++++||||||++.....+...+.
T Consensus 81 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 81 FSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHTTTT-TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHhccC-CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 99998654 6777778887643221 1346799999999999987553333688999999999999864322333222
Q ss_pred HHHHh-----CCCCCcEEEEEeeCC
Q psy11867 270 RIQKR-----LPSDCQIMLFSATYD 289 (399)
Q Consensus 270 ~i~~~-----l~~~~q~l~~SAT~~ 289 (399)
.++.. .++..+++++|||..
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccc
Confidence 22221 246789999999986
No 40
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.6e-34 Score=306.48 Aligned_cols=253 Identities=16% Similarity=0.166 Sum_probs=202.1
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
+|| .|+++|.+++|.+++ |+|++++||||||||++|+++++..+. .++++|||+||++||.|+++.+++++ .
T Consensus 75 ~gf-~pt~iQ~~ai~~il~--g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~-~- 146 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQ--GKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLA-D- 146 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTT--TCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTS-C-
T ss_pred cCC-CCCHHHHHHHHHHHc--CCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhh-C-
Confidence 677 699999999999998 699999999999999999999888773 46789999999999999999999977 3
Q ss_pred CCcEEEEEEcCchh---hhh----hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh----------hcCC
Q psy11867 201 TDLSVRYAVRGENL---ERN----KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI----------ATQG 263 (399)
Q Consensus 201 ~~~~~~~~~~~~~~---~~~----~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~----------~~~~ 263 (399)
.++.+....|+... ... ....++|+|+||++|++++.. +.++++++|||||||++. +..+
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 37888888888765 111 133489999999999888642 667899999999997654 3136
Q ss_pred chHH-HHHHHHhCC-----------CCCcEEEEEee-CChhHH-HHHHhhCCCCeEEecccccccccceeEEEEEeCChh
Q psy11867 264 HQDF-SIRIQKRLP-----------SDCQIMLFSAT-YDKEVM-EFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNID 329 (399)
Q Consensus 264 ~~~~-~~~i~~~l~-----------~~~q~l~~SAT-~~~~v~-~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~ 329 (399)
|... +..+++.++ ...|+++|||| .+..+. .+....+. +.+........++.+.++.+.
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~~--- 296 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSR--- 296 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESCC---
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEecC---
Confidence 6666 778888776 78999999999 565544 23333332 444455566778888888773
Q ss_pred hHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEE-EEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 330 EKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVG-LLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 330 ~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~-~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+...+..++.. ..+++||||++++.|+.++..|...|+.+. .+||. |.+ ++.|++|+++|||
T Consensus 297 -k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLV 359 (1104)
T 4ddu_A 297 -SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILI 359 (1104)
T ss_dssp -CHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEE
T ss_pred -HHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEE
Confidence 44455666655 338999999999999999999999999998 99992 555 9999999999986
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.3e-33 Score=311.68 Aligned_cols=273 Identities=18% Similarity=0.217 Sum_probs=200.3
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC--------CCCCeEEEEeCcHHHHHHHHHH
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS--------IQEPQVLCLAPTYELAIQIGEV 192 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~--------~~~~~~lil~Pt~~La~Q~~~~ 192 (399)
.||.+++++|++++|.++.. ++|++++||||||||++|.+|++..+... ..+.++||++|+++||.|+++.
T Consensus 75 ~g~~~ln~iQs~~~~~al~~-~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 75 EGFKTLNRIQSKLYRAALET-DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp TTCSBCCHHHHHTHHHHHTC-CCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcC-CCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHH
Confidence 38999999999999999976 89999999999999999999999988532 2466899999999999999999
Q ss_pred HHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhcccc-ccCCceeEEEEechhhHhhcCCchHHHH--
Q psy11867 193 VAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRF-FDLSKIKVFVLDEADVMIATQGHQDFSI-- 269 (399)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~-~~~~~~~~lViDEah~l~~~~~~~~~~~-- 269 (399)
+++....+ ++++...+|+..........++|+|+||+++..++.+... ..++++++|||||+|.+.+. ....+.
T Consensus 154 l~~~~~~~-gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~--RG~~lE~~ 230 (1724)
T 4f92_B 154 FGKRLATY-GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDD--RGPVLEAL 230 (1724)
T ss_dssp HHHHHTTT-TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGST--THHHHHHH
T ss_pred HHHHHhhC-CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCc--cHHHHHHH
Confidence 99887765 7888888888776655566789999999998665443322 24789999999999988653 222222
Q ss_pred --HH---HHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCe--EEecccccccccceeEEEEEeCCh--hhHHHH----HH
Q psy11867 270 --RI---QKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPL--IIKLKREEESLDNIKQHYVMCKNI--DEKFEA----VS 336 (399)
Q Consensus 270 --~i---~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~--~i~~~~~~~~~~~i~~~~~~~~~~--~~k~~~----l~ 336 (399)
++ ...+++..|+|++|||+++ ..++++..-.++. .+.+..... +-.+.+.++..... ...... +.
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~R-PvpL~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFR-PVPLEQTYVGITEKKAIKRFQIMNEIVY 308 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGC-SSCEEEECCEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCc-cCccEEEEeccCCcchhhhhHHHHHHHH
Confidence 22 2345778999999999986 3555554433321 122222222 22345555444322 122222 22
Q ss_pred HHh-ccCCCCcEEEEecchHhHHHHHHHHHHC-------------------------------------CCeEEEEcCCC
Q psy11867 337 NIY-GVVTIGQAMIFCHTRKTAAWLAEKMSKE-------------------------------------GLNVGLLSGEL 378 (399)
Q Consensus 337 ~ll-~~~~~~k~IIF~~s~~~a~~l~~~L~~~-------------------------------------g~~v~~lhg~~ 378 (399)
..+ .....+++||||+||+.|+.+|+.|.+. ...++++||||
T Consensus 309 ~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 309 EKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 223 2334578999999999999998887541 23489999999
Q ss_pred CHHHHHHHHHHHhcCCCcccC
Q psy11867 379 TVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 379 ~~~~R~~v~~~F~~G~~~ILV 399 (399)
++.+|..+++.|++|.++|||
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlv 409 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLV 409 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEE
Confidence 999999999999999999986
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.9e-33 Score=284.93 Aligned_cols=166 Identities=16% Similarity=0.080 Sum_probs=123.8
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCC--CCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQ--EPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
++...|+|+|.++++.++. |+|+++++|||+|||++|++|++..+..... ++++|||+||++|+.|+++.++++..
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~--~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 3 METKKARSYQIELAQPAIN--GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp -----CCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCCHHHHHHHHHHHc--CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4567899999999999998 6999999999999999999999998865432 67899999999999999999999987
Q ss_pred cCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHh-
Q psy11867 199 HITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKR- 274 (399)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~- 274 (399)
.. ++.+....|+...... ....++|+|+||++|.+++.......+.+++++|+||||++.+...+...+..+...
T Consensus 81 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 81 RQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 159 (556)
T ss_dssp GG-TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHH
T ss_pred cc-CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhh
Confidence 65 6777777777644322 234578999999999998655333378999999999999997643222222222222
Q ss_pred ---CCCCCcEEEEEeeCC
Q psy11867 275 ---LPSDCQIMLFSATYD 289 (399)
Q Consensus 275 ---l~~~~q~l~~SAT~~ 289 (399)
..+..|+++||||++
T Consensus 160 ~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVG 177 (556)
T ss_dssp HCC---CCEEEEEESCCC
T ss_pred hcccCCCCeEEEEeCCcc
Confidence 135689999999984
No 43
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-33 Score=294.78 Aligned_cols=261 Identities=15% Similarity=0.141 Sum_probs=197.4
Q ss_pred HcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 120 EMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
..+|. |+++|.++++.+++ |++++++||||||||++|.++++..+.. +.++||++||++|+.|+++.+++++.
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~--g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDR--GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHH--TCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred hCCCC-CCHHHHHHHHHHHc--CCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 35664 99999999999998 6999999999999999999999988753 46899999999999999999998764
Q ss_pred CCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCC
Q psy11867 200 ITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279 (399)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~ 279 (399)
.+....|+.... ...+|+|+||++|.+++.+ ....++++++|||||||++.+. ++...+..++..++...
T Consensus 155 ----~vglltGd~~~~----~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~-~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN----PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDK-ERGVVWEETIILLPDKV 224 (1010)
T ss_dssp ----CEEEECSSCEEC----TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCT-TTHHHHHHHHHHSCTTC
T ss_pred ----CEEEEeCCCccC----CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhccc-chhHHHHHHHHhcCCCC
Confidence 345566665443 2468999999999988654 4456889999999999999864 56666778888899999
Q ss_pred cEEEEEeeCChhH--HHHHHhhCCCCeEEecccccccccceeEEEEEeC---------Ch--------------------
Q psy11867 280 QIMLFSATYDKEV--MEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCK---------NI-------------------- 328 (399)
Q Consensus 280 q~l~~SAT~~~~v--~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~---------~~-------------------- 328 (399)
|+++||||+++.. ..++......+..+...... +..+.+++.... ..
T Consensus 225 ~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 225 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 9999999998753 23333334455544333221 122333332211 00
Q ss_pred -------------------------hhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCC--------------
Q psy11867 329 -------------------------DEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGL-------------- 369 (399)
Q Consensus 329 -------------------------~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~-------------- 369 (399)
......+...+......++||||++++.|+.++..|...++
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 11122344444444556999999999999999999977543
Q ss_pred -------------------------eEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 370 -------------------------NVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 370 -------------------------~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.++.+||+|++.+|..+++.|++|.++|||
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLV 437 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 437 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 288999999999999999999999999986
No 44
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.5e-33 Score=280.67 Aligned_cols=164 Identities=16% Similarity=0.086 Sum_probs=130.3
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC--CCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI--QEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~--~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
..|+++|.++++.++. |+|+++++|||+|||++|++|++..+.... .++++|||+||++|+.|+++.++++....
T Consensus 3 ~~~~~~Q~~~i~~~~~--~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK--GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL- 79 (555)
T ss_dssp CCCCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-
T ss_pred CCCcHHHHHHHHHHhC--CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-
Confidence 4799999999999998 699999999999999999999999886543 26789999999999999999999998765
Q ss_pred CcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC---
Q psy11867 202 DLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL--- 275 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l--- 275 (399)
++.+....|+...... ....++|+|+||++|.+++.......+.+++++|+||||++.+...+...+..++...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 6778888888754332 2345789999999999986554333788999999999999976433333333333321
Q ss_pred --CCCCcEEEEEeeCCh
Q psy11867 276 --PSDCQIMLFSATYDK 290 (399)
Q Consensus 276 --~~~~q~l~~SAT~~~ 290 (399)
.+..|++++|||++.
T Consensus 160 ~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGV 176 (555)
T ss_dssp CCSCCCEEEEEESCCCC
T ss_pred ccCCCCeEEEEecCccc
Confidence 256799999999853
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.5e-34 Score=309.14 Aligned_cols=252 Identities=18% Similarity=0.224 Sum_probs=201.8
Q ss_pred HcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 120 EMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
.+||. | ++|.+++|.+++ |+|++++||||||||+ |++|++..+.. .++++|||+||++||.|+++.+++++..
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~--g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILR--KESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHT--TCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred hcCCC-H-HHHHHHHHHHHh--CCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 47999 9 999999999998 7999999999999998 88899887754 4678999999999999999999999877
Q ss_pred CCCc----EEEEEEcCchhhhh-----hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHH
Q psy11867 200 ITDL----SVRYAVRGENLERN-----KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIR 270 (399)
Q Consensus 200 ~~~~----~~~~~~~~~~~~~~-----~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~ 270 (399)
. ++ .+....|+...... ....++|+|+||++|++++.+ ++++++|||||||+|++ +...+..
T Consensus 126 ~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~---~~~~~~~ 196 (1054)
T 1gku_B 126 A-GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK---ASKNVDK 196 (1054)
T ss_dssp T-CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT---STHHHHH
T ss_pred c-CCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh---ccccHHH
Confidence 5 55 77788887655331 112289999999999997643 66899999999999986 4455666
Q ss_pred HHHhC-----------CCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHh
Q psy11867 271 IQKRL-----------PSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIY 339 (399)
Q Consensus 271 i~~~l-----------~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll 339 (399)
+...+ +...|+++||||++.. ..+...++.++..+.+........++.+.++. ..+...+..++
T Consensus 197 i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~----~~k~~~L~~ll 271 (1054)
T 1gku_B 197 LLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN----DESISTLSSIL 271 (1054)
T ss_dssp HHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES----CCCTTTTHHHH
T ss_pred HHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec----hhHHHHHHHHH
Confidence 66655 3578999999999877 54444444444445555555566778777762 34556677777
Q ss_pred ccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 340 GVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 340 ~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
... .+++||||++++.|+.+++.|... +++..+||+| ..+++.|++|+++|||
T Consensus 272 ~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLV 324 (1054)
T 1gku_B 272 EKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLI 324 (1054)
T ss_dssp TTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEE
T ss_pred hhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEE
Confidence 665 478999999999999999999888 9999999998 4789999999999986
No 46
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.3e-33 Score=288.14 Aligned_cols=266 Identities=16% Similarity=0.190 Sum_probs=198.9
Q ss_pred HcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 120 EMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
.+|| .||++|..++|.++. |+ |++++||+|||++|.+|++..... +..++||+||++||.|.++++..++.+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~--G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHD--GN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHT--TS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhC--CC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4799 999999999999998 56 999999999999999999854432 457999999999999999999999988
Q ss_pred CCCcEEEEEEcCchhhhhh-ccCCcEEEeCchhH-HHhhhcc-----ccccCCceeEEEEechhhHh-hcC---------
Q psy11867 200 ITDLSVRYAVRGENLERNK-KITEQIIIGTPGKV-LDWGLKY-----RFFDLSKIKVFVLDEADVMI-ATQ--------- 262 (399)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~IlV~Tp~~l-~~~~~~~-----~~~~~~~~~~lViDEah~l~-~~~--------- 262 (399)
+ ++++.+.+||.+..... ...++|+||||++| .+++... +.+.++.+.++|+||||+|+ +..
T Consensus 151 l-gl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~ 229 (844)
T 1tf5_A 151 L-GLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQ 229 (844)
T ss_dssp T-TCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEE
T ss_pred c-CCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCC
Confidence 7 89999999987654332 45689999999999 5554332 34568899999999999998 431
Q ss_pred -----CchHHHHHHHHhCC---------CCCcEE-----------------EEEeeCCh---hHHHHH--HhhCC-C--C
Q psy11867 263 -----GHQDFSIRIQKRLP---------SDCQIM-----------------LFSATYDK---EVMEFA--QDMVP-N--P 303 (399)
Q Consensus 263 -----~~~~~~~~i~~~l~---------~~~q~l-----------------~~SAT~~~---~v~~~~--~~~~~-~--p 303 (399)
++...+..+...++ +.+|++ +||||++. .+...+ ..++. + +
T Consensus 230 ~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dY 309 (844)
T 1tf5_A 230 AAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDY 309 (844)
T ss_dssp EECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTE
T ss_pred cccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCce
Confidence 25567788888887 367887 99999874 343332 22221 1 1
Q ss_pred eE----------------------------------Eeccccccccccee------------------------------
Q psy11867 304 LI----------------------------------IKLKREEESLDNIK------------------------------ 319 (399)
Q Consensus 304 ~~----------------------------------i~~~~~~~~~~~i~------------------------------ 319 (399)
+. +.+.....+...+.
T Consensus 310 iv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~ 389 (844)
T 1tf5_A 310 VVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYN 389 (844)
T ss_dssp EEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred EEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhC
Confidence 10 00111111111111
Q ss_pred ----------------EEEEEeCChhhHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHH
Q psy11867 320 ----------------QHYVMCKNIDEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVE 381 (399)
Q Consensus 320 ----------------~~~~~~~~~~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~ 381 (399)
+....+.....|+..+...+... ...++||||+|++.++.|+..|...|+++.++||++.+.
T Consensus 390 l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~r 469 (844)
T 1tf5_A 390 MQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHER 469 (844)
T ss_dssp CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHH
T ss_pred CceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHH
Confidence 11122235577888888877542 346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy11867 382 QRLSILDRFREGE 394 (399)
Q Consensus 382 ~R~~v~~~F~~G~ 394 (399)
+|..+.+.|+.|.
T Consensus 470 Er~ii~~ag~~g~ 482 (844)
T 1tf5_A 470 EAQIIEEAGQKGA 482 (844)
T ss_dssp HHHHHTTTTSTTC
T ss_pred HHHHHHHcCCCCe
Confidence 9987877887774
No 47
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7e-33 Score=292.02 Aligned_cols=167 Identities=16% Similarity=0.070 Sum_probs=127.3
Q ss_pred HcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC--CCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 120 EMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI--QEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~--~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
.+|+..|+++|.++++.++. |+|+++++|||+|||++|++|++..+.... .++++|||+||++|+.|+++.+++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~--~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAIN--GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp -----CCCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHh--CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 36889999999999999998 699999999999999999999999886542 26789999999999999999999998
Q ss_pred ccCCCcEEEEEEcCchhhh---hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHh
Q psy11867 198 KHITDLSVRYAVRGENLER---NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKR 274 (399)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~---~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~ 274 (399)
... ++.+....|+..... .....++|+|+||++|.+++.......+.++++|||||||++.....+...+..+...
T Consensus 321 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 321 ERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp GGG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred ccC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 765 678888888774432 2245689999999999998754333378899999999999987643333333233322
Q ss_pred ----CCCCCcEEEEEeeCC
Q psy11867 275 ----LPSDCQIMLFSATYD 289 (399)
Q Consensus 275 ----l~~~~q~l~~SAT~~ 289 (399)
..+..|++++|||..
T Consensus 400 ~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHTTCCCCCEEEEEESCCC
T ss_pred hhccCCCCCeEEEEcCCcc
Confidence 145689999999984
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1e-32 Score=280.86 Aligned_cols=265 Identities=15% Similarity=0.130 Sum_probs=178.0
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
+|. .|+++|..++|.++. |+ |++++||||||++|++|++..... +.+++||+||++||.|+++++..++.++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~--G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~l 142 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNE--RC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFL 142 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHS--SE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CCChHHHhhcccccC--Ce--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 564 899999999999998 45 999999999999999999865443 4579999999999999999999999887
Q ss_pred CCcEEEEEEcCchhhhh-hccCCcEEEeCchhH-HHhhhccc-----cccCCceeEEEEechhhHhhcCC----------
Q psy11867 201 TDLSVRYAVRGENLERN-KKITEQIIIGTPGKV-LDWGLKYR-----FFDLSKIKVFVLDEADVMIATQG---------- 263 (399)
Q Consensus 201 ~~~~~~~~~~~~~~~~~-~~~~~~IlV~Tp~~l-~~~~~~~~-----~~~~~~~~~lViDEah~l~~~~~---------- 263 (399)
++++.+.+||...... ....++|+||||++| .+++...- ...+++++++|+||||+|+...+
T Consensus 143 -gl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~ 221 (853)
T 2fsf_A 143 -GLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPA 221 (853)
T ss_dssp -TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-
T ss_pred -CCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCC
Confidence 7899999998765432 244689999999999 67765432 35678999999999999983222
Q ss_pred -----chHHHHHHHHhCCC--------------------CCcEE------------------------EEEeeCCh---h
Q psy11867 264 -----HQDFSIRIQKRLPS--------------------DCQIM------------------------LFSATYDK---E 291 (399)
Q Consensus 264 -----~~~~~~~i~~~l~~--------------------~~q~l------------------------~~SAT~~~---~ 291 (399)
+...+..+...++. .+|++ +||||.+. .
T Consensus 222 ~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~ 301 (853)
T 2fsf_A 222 EDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHH 301 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHH
Confidence 44556677777764 45654 89999764 2
Q ss_pred HHHHH--------------------------HhhCC---------C----CeEEecccccccccceeE------------
Q psy11867 292 VMEFA--------------------------QDMVP---------N----PLIIKLKREEESLDNIKQ------------ 320 (399)
Q Consensus 292 v~~~~--------------------------~~~~~---------~----p~~i~~~~~~~~~~~i~~------------ 320 (399)
+...+ ..++. . +..+.+..+..+...|.+
T Consensus 302 i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~G 381 (853)
T 2fsf_A 302 VTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAG 381 (853)
T ss_dssp -------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhc
Confidence 22111 11111 0 122333333333333432
Q ss_pred ----------------------------------EEEEeCChhhHHHHHHHHhcc--CCCCcEEEEecchHhHHHHHHHH
Q psy11867 321 ----------------------------------HYVMCKNIDEKFEAVSNIYGV--VTIGQAMIFCHTRKTAAWLAEKM 364 (399)
Q Consensus 321 ----------------------------------~~~~~~~~~~k~~~l~~ll~~--~~~~k~IIF~~s~~~a~~l~~~L 364 (399)
..+.+.....|+.++...+.. ....++||||+|++.++.|+..|
T Consensus 382 mTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L 461 (853)
T 2fsf_A 382 MTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNEL 461 (853)
T ss_dssp EECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHH
Confidence 112234567899999888754 24468999999999999999999
Q ss_pred HHCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q psy11867 365 SKEGLNVGLLSGELTVEQRLSILDRFREGE 394 (399)
Q Consensus 365 ~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~ 394 (399)
.+.|+++.++||++.+.+|..+.+.|+.|.
T Consensus 462 ~~~gi~~~vLnak~~~rEa~iia~agr~G~ 491 (853)
T 2fsf_A 462 TKAGIKHNVLNAKFHANEAAIVAQAGYPAA 491 (853)
T ss_dssp HHTTCCCEECCTTCHHHHHHHHHTTTSTTC
T ss_pred HHCCCCEEEecCChhHHHHHHHHhcCCCCe
Confidence 999999999999999999999999999995
No 49
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.98 E-value=6.9e-32 Score=287.81 Aligned_cols=166 Identities=16% Similarity=0.071 Sum_probs=126.7
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCC--CCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQ--EPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
.|+..|+++|.++++.++. |+|+++++|||+|||++|++|++..+..... +.++|||+||++|+.|+++.++++..
T Consensus 244 ~~~~~~r~~Q~~ai~~il~--g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAIN--GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ----CCCHHHHHHHHHHHT--TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHc--CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 5788999999999999998 6999999999999999999999998876432 67899999999999999999999987
Q ss_pred cCCCcEEEEEEcCchhhhh---hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHh-
Q psy11867 199 HITDLSVRYAVRGENLERN---KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKR- 274 (399)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~- 274 (399)
.. ++.+....|+...... .....+|+|+||++|.+++.......+.+++++||||||++.....+...+..+...
T Consensus 322 ~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 322 RQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp TT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 65 6778888887644322 234678999999999998765433378899999999999987543233333233322
Q ss_pred ---CCCCCcEEEEEeeCC
Q psy11867 275 ---LPSDCQIMLFSATYD 289 (399)
Q Consensus 275 ---l~~~~q~l~~SAT~~ 289 (399)
..+..|+++||||..
T Consensus 401 ~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVG 418 (936)
T ss_dssp HTTCSCCCEEEEEESCCC
T ss_pred hccCCCcCeEEEecCCcc
Confidence 145689999999984
No 50
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.98 E-value=1.5e-31 Score=285.33 Aligned_cols=263 Identities=15% Similarity=0.155 Sum_probs=197.3
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
++| .|+++|.++++.+++ |+|+++++|||||||++|++++...+. .+.++||++|+++|+.|+++.+++++.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~--g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~-- 107 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQ--GDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFD-- 107 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHT--TCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC---
T ss_pred CCC-CCCHHHHHHHHHHHc--CCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcC--
Confidence 455 589999999999998 699999999999999999999987764 356899999999999999999988643
Q ss_pred CCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCc
Q psy11867 201 TDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280 (399)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q 280 (399)
++.+....|+.... ...+|+|+||++|.+++.. ....+.++++|||||||++.+. ++...+..++..+++..|
T Consensus 108 -~~~v~~l~G~~~~~----~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~-~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 108 -DVNIGLITGDVQIN----PDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQ-DRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp --CCEEEECSSCEEC----TTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTT-CTTCCHHHHHHHSCTTCE
T ss_pred -CCeEEEEeCCCccC----CCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECccccccc-chHHHHHHHHHhcccCCC
Confidence 45667777766433 3468999999999988654 3446789999999999998764 566667788889999999
Q ss_pred EEEEEeeCChhHHHHHHhhC---CC------------CeEEecccccccc------------------------------
Q psy11867 281 IMLFSATYDKEVMEFAQDMV---PN------------PLIIKLKREEESL------------------------------ 315 (399)
Q Consensus 281 ~l~~SAT~~~~v~~~~~~~~---~~------------p~~i~~~~~~~~~------------------------------ 315 (399)
++++|||+++.. .+...+. .. |....+.......
T Consensus 181 iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (997)
T 4a4z_A 181 FILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAP 259 (997)
T ss_dssp EEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------
T ss_pred EEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccc
Confidence 999999998653 3333221 11 2221111000000
Q ss_pred ------------------------------------------------cceeEEEEEeCChhhHHHHHHHHhccCCCCcE
Q psy11867 316 ------------------------------------------------DNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQA 347 (399)
Q Consensus 316 ------------------------------------------------~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~ 347 (399)
.+..+++........+...+...+......++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~ 339 (997)
T 4a4z_A 260 SKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPM 339 (997)
T ss_dssp ---------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCE
Confidence 00000111111223456677777877777899
Q ss_pred EEEecchHhHHHHHHHHHHCCC---------------------------------------eEEEEcCCCCHHHHHHHHH
Q psy11867 348 MIFCHTRKTAAWLAEKMSKEGL---------------------------------------NVGLLSGELTVEQRLSILD 388 (399)
Q Consensus 348 IIF~~s~~~a~~l~~~L~~~g~---------------------------------------~v~~lhg~~~~~~R~~v~~ 388 (399)
||||++++.|+.++..|...|+ .+..+||+|++.+|..+++
T Consensus 340 IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~ 419 (997)
T 4a4z_A 340 VVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 419 (997)
T ss_dssp EEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHH
Confidence 9999999999999999977655 5899999999999999999
Q ss_pred HHhcCCCcccC
Q psy11867 389 RFREGEFKIYS 399 (399)
Q Consensus 389 ~F~~G~~~ILV 399 (399)
.|++|.++|||
T Consensus 420 ~F~~G~~kVLv 430 (997)
T 4a4z_A 420 LFSKGFIKVLF 430 (997)
T ss_dssp HHHTTCCSEEE
T ss_pred HHHCCCCcEEE
Confidence 99999999986
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.97 E-value=7.6e-32 Score=274.90 Aligned_cols=266 Identities=15% Similarity=0.161 Sum_probs=201.6
Q ss_pred HcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 120 EMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
.+|+ +|+++|..++|.++. |+ |++++||+|||++|.+|++..... +..++||+||++||.|.++++..++.+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~--G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHL--GN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHT--TE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhc--CC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 3788 999999999999998 45 999999999999999999754433 346999999999999999999999988
Q ss_pred CCCcEEEEEEcCchhhhh-hccCCcEEEeCchhH-HHhhhcc-----ccccCCceeEEEEechhhHhhcC----------
Q psy11867 200 ITDLSVRYAVRGENLERN-KKITEQIIIGTPGKV-LDWGLKY-----RFFDLSKIKVFVLDEADVMIATQ---------- 262 (399)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~~~~IlV~Tp~~l-~~~~~~~-----~~~~~~~~~~lViDEah~l~~~~---------- 262 (399)
+ ++++.+.+||...... ....++|+||||++| .+++... +.+.++.+.++||||||+|+...
T Consensus 179 l-GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~ 257 (922)
T 1nkt_A 179 L-GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGP 257 (922)
T ss_dssp T-TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEE
T ss_pred c-CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCC
Confidence 7 8999999998765332 245689999999999 6776543 24568899999999999998321
Q ss_pred -----CchHHHHHHHHhCC---------CCCcEE-----------------EEEeeCCh---hHHHHHH--hhCC-----
Q psy11867 263 -----GHQDFSIRIQKRLP---------SDCQIM-----------------LFSATYDK---EVMEFAQ--DMVP----- 301 (399)
Q Consensus 263 -----~~~~~~~~i~~~l~---------~~~q~l-----------------~~SAT~~~---~v~~~~~--~~~~----- 301 (399)
++...+..+...++ +.+|++ +||||.+. .+...++ .++.
T Consensus 258 ~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dY 337 (922)
T 1nkt_A 258 ADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDY 337 (922)
T ss_dssp CCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTE
T ss_pred CCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccce
Confidence 35677888999997 678888 99999875 3333221 1221
Q ss_pred ---CCeEEecc-----------------------------cccccccceeE-----------------------------
Q psy11867 302 ---NPLIIKLK-----------------------------REEESLDNIKQ----------------------------- 320 (399)
Q Consensus 302 ---~p~~i~~~-----------------------------~~~~~~~~i~~----------------------------- 320 (399)
++..+.++ .+..+...|.+
T Consensus 338 iV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~ 417 (922)
T 1nkt_A 338 IVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYK 417 (922)
T ss_dssp EECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred eeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhC
Confidence 11111111 11112222221
Q ss_pred -----------------EEEEeCChhhHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHH
Q psy11867 321 -----------------HYVMCKNIDEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVE 381 (399)
Q Consensus 321 -----------------~~~~~~~~~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~ 381 (399)
....+.....|+..+...+... ...++||||+|++.++.|+..|.+.|+++.++||++.+.
T Consensus 418 l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 418 LGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQ 497 (922)
T ss_dssp CEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHH
T ss_pred CCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHH
Confidence 1122335577898888877543 345899999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCC
Q psy11867 382 QRLSILDRFREGE 394 (399)
Q Consensus 382 ~R~~v~~~F~~G~ 394 (399)
+|..+.+.|+.|.
T Consensus 498 Ea~iia~agr~G~ 510 (922)
T 1nkt_A 498 EATIIAVAGRRGG 510 (922)
T ss_dssp HHHHHHTTTSTTC
T ss_pred HHHHHHhcCCCCe
Confidence 8888889999885
No 52
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.5e-30 Score=258.17 Aligned_cols=267 Identities=20% Similarity=0.256 Sum_probs=193.4
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.|+|+|.++++.++. + ++++++|||+|||++++++++..+. ..+.++|||+|+++|+.|+.+.++++... +...
T Consensus 9 ~l~~~Q~~~i~~~~~--~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~ 82 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE--T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEK 82 (494)
T ss_dssp CCCHHHHHHHHHGGG--S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGG
T ss_pred CccHHHHHHHHHHhh--C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCc-chhh
Confidence 799999999999998 5 9999999999999999999988775 24567999999999999999999998632 2456
Q ss_pred EEEEEcCchhhhhh--ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEE
Q psy11867 205 VRYAVRGENLERNK--KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM 282 (399)
Q Consensus 205 ~~~~~~~~~~~~~~--~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l 282 (399)
+....|+....... ....+|+|+||++|...+.. +.+.+.+++++|+||||++... .....+........+..+++
T Consensus 83 v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~-~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 83 IVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGN-YAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp EEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTT-CHHHHHHHHHHHHCSSCCEE
T ss_pred eEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCC-CcHHHHHHHHHhcCCCCeEE
Confidence 67777766543322 33578999999999987543 4567889999999999998753 23333444444456788999
Q ss_pred EEEeeCChh---HHHHHHhhCCCCeEEeccccccc---ccceeEEEEE--------------------------------
Q psy11867 283 LFSATYDKE---VMEFAQDMVPNPLIIKLKREEES---LDNIKQHYVM-------------------------------- 324 (399)
Q Consensus 283 ~~SAT~~~~---v~~~~~~~~~~p~~i~~~~~~~~---~~~i~~~~~~-------------------------------- 324 (399)
++|||.... +..+...+...+..+........ .......+..
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998743 44444443322222211100000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy11867 325 -------------------------------------------------------------------------------- 324 (399)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (399)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence
Q ss_pred -----------------eCChhhHHHHHHHHhcc----CCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcC-------
Q psy11867 325 -----------------CKNIDEKFEAVSNIYGV----VTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSG------- 376 (399)
Q Consensus 325 -----------------~~~~~~k~~~l~~ll~~----~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg------- 376 (399)
+.....|...+.+++.. ...+++||||++++.++.+++.|...|+.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 00223466667777766 46789999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCcccC
Q psy11867 377 -ELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 377 -~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+|+..+|.+++++|++|+.+|||
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv 424 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLV 424 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEE
T ss_pred ccCCHHHHHHHHHHHhcCCceEEE
Confidence 99999999999999999999986
No 53
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=6.2e-30 Score=276.67 Aligned_cols=269 Identities=16% Similarity=0.139 Sum_probs=199.5
Q ss_pred CCCHHHHHHHHH-cCCCCChHHHHHHhhhhhc----CCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH
Q psy11867 109 HLKPELLKGVYE-MGFYAPSKIQETALPTLLA----DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY 183 (399)
Q Consensus 109 ~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~ll~----~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 183 (399)
+.++...+.+.+ ++| .|||+|.+|++.+++ +.++|++++++||+|||++|+++++..+.. +.+++|++||+
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt~ 662 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPTT 662 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSSH
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEechH
Confidence 455666666654 566 479999999999987 323599999999999999999998877653 45899999999
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechh
Q psy11867 184 ELAIQIGEVVAKMGKHITDLSVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEAD 256 (399)
Q Consensus 184 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah 256 (399)
+||.|+++.+++....+ ++.+....+...... ...+..+|+|+||+.+. +.+.+++++++||||||
T Consensus 663 ~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp HHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEESGG
T ss_pred HHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceEEEechH
Confidence 99999999999877654 466666655433221 11346899999998653 24567899999999999
Q ss_pred hHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHH
Q psy11867 257 VMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVS 336 (399)
Q Consensus 257 ~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 336 (399)
++.. ....+++.++.++++++||||..+....+....+.++..+..... ....+..++..... ......+.
T Consensus 736 ~~g~------~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~~~-~~i~~~il 806 (1151)
T 2eyq_A 736 RFGV------RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYDS-MVVREAIL 806 (1151)
T ss_dssp GSCH------HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEECCH-HHHHHHHH
T ss_pred hcCh------HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecCCH-HHHHHHHH
Confidence 9632 223445555678999999999887777777776666555433322 12234444443322 22222222
Q ss_pred HHhccCCCCcEEEEecchHhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 337 NIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE--GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 337 ~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+ ...++++|||+++++++.+++.|++. +.++..+||+|++.+|++++++|++|+++|||
T Consensus 807 ~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLV 869 (1151)
T 2eyq_A 807 REI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLV 869 (1151)
T ss_dssp HHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEE
T ss_pred HHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEE
Confidence 222 23579999999999999999999887 88999999999999999999999999999986
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=7.1e-32 Score=280.95 Aligned_cols=163 Identities=17% Similarity=0.063 Sum_probs=122.6
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC---CCCCeEEEEeCcHHHHHHH-HHHHHHHhcc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS---IQEPQVLCLAPTYELAIQI-GEVVAKMGKH 199 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~---~~~~~~lil~Pt~~La~Q~-~~~~~~~~~~ 199 (399)
..|+++|.++++.+++ |+|+++++|||+|||++|++|++..+... ..+.++|||+|+++|+.|+ .+.+++++..
T Consensus 6 ~~l~~~Q~~~i~~il~--g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE--GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHS--SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHh--CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 4799999999999998 69999999999999999999999877542 1236799999999999999 9999998865
Q ss_pred CCCcEEEEEEcCchhhh---hhccCCcEEEeCchhHHHhhh-----ccccccCCceeEEEEechhhHhhcCCchHHHHHH
Q psy11867 200 ITDLSVRYAVRGENLER---NKKITEQIIIGTPGKVLDWGL-----KYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRI 271 (399)
Q Consensus 200 ~~~~~~~~~~~~~~~~~---~~~~~~~IlV~Tp~~l~~~~~-----~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i 271 (399)
.+.+....|+..... ......+|+|+||++|.+.+. ....+.+.++++|||||||++.....+......+
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 367777777654432 224568999999999998764 2334578899999999999986543444444333
Q ss_pred HHhC-------------CCCCcEEEEEeeCCh
Q psy11867 272 QKRL-------------PSDCQIMLFSATYDK 290 (399)
Q Consensus 272 ~~~l-------------~~~~q~l~~SAT~~~ 290 (399)
+... .+..+++++|||...
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccc
Confidence 3221 156799999999875
No 55
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=1.7e-31 Score=268.25 Aligned_cols=262 Identities=14% Similarity=0.090 Sum_probs=189.0
Q ss_pred CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCC
Q psy11867 123 FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 202 (399)
...|+++|.+|++.+++ +++++++++||+|||++|++++...+.. .+.++|||+||++|+.|+++.+++++.. +.
T Consensus 111 ~~~l~~~Q~~ai~~~~~--~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~-~~ 185 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV--NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLF-SH 185 (510)
T ss_dssp EECCCHHHHHHHHHHHH--HSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSS-CG
T ss_pred CCCCCHHHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcC-Cc
Confidence 44899999999999998 5999999999999999999999887753 3348999999999999999999988554 35
Q ss_pred cEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEE
Q psy11867 203 LSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM 282 (399)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l 282 (399)
..+....++...........+|+|+||+.|... ....+++++++|+||||++.. .....+++.+++..+++
T Consensus 186 ~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 186 AMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp GGEEECGGGCCTTGGGCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH-----HHHHHHGGGCTTCCEEE
T ss_pred cceEEEecCCccccccccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc-----ccHHHHHHhcccCcEEE
Confidence 566777777655444456789999999977543 334577899999999999854 34567778888889999
Q ss_pred EEEeeCChhHHHHH-HhhCCCCeEEecccccc------cccceeEEEEEeC----------Ch----------hhHHHHH
Q psy11867 283 LFSATYDKEVMEFA-QDMVPNPLIIKLKREEE------SLDNIKQHYVMCK----------NI----------DEKFEAV 335 (399)
Q Consensus 283 ~~SAT~~~~v~~~~-~~~~~~p~~i~~~~~~~------~~~~i~~~~~~~~----------~~----------~~k~~~l 335 (399)
+||||.+....... ...+.++..+.+..... ....+....+... .. ..+...+
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI 336 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH
Confidence 99999876532211 11122344333322110 0111111111111 10 1233344
Q ss_pred HHHhccC---CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 336 SNIYGVV---TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 336 ~~ll~~~---~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..++... ...++||||+ .++++.+++.|...+.++..+||+|+..+|..+++.|++|+.+|||
T Consensus 337 ~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv 402 (510)
T 2oca_A 337 AKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIV 402 (510)
T ss_dssp HHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEE
Confidence 5544433 3345666666 8889999999999888999999999999999999999999999986
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=9.2e-31 Score=271.45 Aligned_cols=265 Identities=20% Similarity=0.220 Sum_probs=186.3
Q ss_pred HHHHHHHHHcCCCCChHHHHHHhhhhhcC----CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHH
Q psy11867 112 PELLKGVYEMGFYAPSKIQETALPTLLAD----PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI 187 (399)
Q Consensus 112 ~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~----~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 187 (399)
+.+.+.+..++| .||++|.++++.++++ .++|++++|+||||||++|++|++..+.. +.+++|++||++||.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 344455567899 9999999999999873 13699999999999999999999988753 467999999999999
Q ss_pred HHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhh
Q psy11867 188 QIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIA 260 (399)
Q Consensus 188 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~ 260 (399)
|+++.++++.... ++.+....|+...... ..+..+|+|+||+.+.+ ...+.+++++|+||+|++..
T Consensus 432 Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g~ 504 (780)
T 1gm5_A 432 QHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFGV 504 (780)
T ss_dssp HHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC--
T ss_pred HHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhhH
Confidence 9999999998765 6788888888654321 13458999999998754 34578999999999999743
Q ss_pred cCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhc
Q psy11867 261 TQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYG 340 (399)
Q Consensus 261 ~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~ 340 (399)
.+ ...+......+++++||||..+....+......+...+... ......+...+.... +...+...+.
T Consensus 505 ~q------r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~--p~~r~~i~~~~~~~~----~~~~l~~~i~ 572 (780)
T 1gm5_A 505 KQ------REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEM--PPGRKEVQTMLVPMD----RVNEVYEFVR 572 (780)
T ss_dssp ---------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCC--CSSCCCCEECCCCSS----THHHHHHHHH
T ss_pred HH------HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeecc--CCCCcceEEEEeccc----hHHHHHHHHH
Confidence 21 11122233578999999997766544433211222222111 111122332222111 1222223322
Q ss_pred -c-CCCCcEEEEecch--------HhHHHHHHHHHH---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 341 -V-VTIGQAMIFCHTR--------KTAAWLAEKMSK---EGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 341 -~-~~~~k~IIF~~s~--------~~a~~l~~~L~~---~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
. ...++++|||++. +.++.+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||
T Consensus 573 ~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILV 644 (780)
T 1gm5_A 573 QEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILV 644 (780)
T ss_dssp HHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCC
T ss_pred HHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 2 2346899999965 457889999988 478999999999999999999999999999997
No 57
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.96 E-value=2.8e-29 Score=261.64 Aligned_cols=282 Identities=21% Similarity=0.247 Sum_probs=202.8
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhh--CCCCCCCeEEEE
Q psy11867 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRV--NPSIQEPQVLCL 179 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l--~~~~~~~~~lil 179 (399)
+.+|+++++++.+.+.+...+ ..|+++|.++++.++.+ +++++++||||||||+ ++|++... .....+.+++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~-~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQN-NQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHH-CSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhC-CCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 467999999999999999988 78999999999999986 7889999999999998 45555222 111125679999
Q ss_pred eCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhh-H
Q psy11867 180 APTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADV-M 258 (399)
Q Consensus 180 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~-l 258 (399)
+|+++|+.|+++.+........+..+.+..... .......+|+|+|||++...+.. ...+.++++|||||+|. +
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~---~~~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lIlDEah~R~ 221 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE---NKTSNKTILKYMTDGMLLREAME--DHDLSRYSCIILDEAHERT 221 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE---EECCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEEECSGGGCC
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceeccc---cccCCCCCEEEECHHHHHHHHhh--CccccCCCEEEecCccccc
Confidence 999999999988776543221122223222221 12234568999999999987654 24588999999999995 5
Q ss_pred hhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhh---HHHHH
Q psy11867 259 IATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDE---KFEAV 335 (399)
Q Consensus 259 ~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~---k~~~l 335 (399)
++.......+..+.... ++.|+++||||++. ..+. .++.++..+.+.... ..+.++|......+. ....+
T Consensus 222 ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l 294 (773)
T 2xau_A 222 LATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTV 294 (773)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHH-HHhcCCCcccccCcc---cceEEEEecCCchhHHHHHHHHH
Confidence 54322334444454443 57899999999964 3343 344444444443222 345666655443322 23344
Q ss_pred HHHhccCCCCcEEEEecchHhHHHHHHHHHH-----------CCCeEEEEcCCCCHHHHHHHHHHHh-----cCCCcccC
Q psy11867 336 SNIYGVVTIGQAMIFCHTRKTAAWLAEKMSK-----------EGLNVGLLSGELTVEQRLSILDRFR-----EGEFKIYS 399 (399)
Q Consensus 336 ~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~-----------~g~~v~~lhg~~~~~~R~~v~~~F~-----~G~~~ILV 399 (399)
..+......+++||||++++.++.++..|.+ .++.+..+||+|++++|..+++.|+ +|+.+|||
T Consensus 295 ~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlV 374 (773)
T 2xau_A 295 LQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVI 374 (773)
T ss_dssp HHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEE
T ss_pred HHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEE
Confidence 4455555678999999999999999999985 5788999999999999999999999 99999986
No 58
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=1.9e-31 Score=271.55 Aligned_cols=251 Identities=16% Similarity=0.156 Sum_probs=174.0
Q ss_pred CCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHH
Q psy11867 108 LHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI 187 (399)
Q Consensus 108 ~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 187 (399)
+++++.+.+.+... ...|+|+|+.++|.+++ |+|++++||||||||++|++|++..+.. .++++|||+||++||.
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~--g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~ 229 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRK--KRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAA 229 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGST--TCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHH
Confidence 45566555555433 58899999999999888 7999999999999999999999988754 4578999999999999
Q ss_pred HHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHH
Q psy11867 188 QIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDF 267 (399)
Q Consensus 188 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~ 267 (399)
|+++.++. ..+.+ .+............+.+.|.+.+...+... ..+++++++||||||++ + .++...
T Consensus 230 Qi~~~l~~-------~~v~~--~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~-~~~~~~ 296 (618)
T 2whx_A 230 EMEEALRG-------LPIRY--QTPAVKSDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-D-PCSVAA 296 (618)
T ss_dssp HHHHHTTT-------SCEEE--CCTTSSCCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-S-HHHHHH
T ss_pred HHHHHhcC-------CceeE--ecccceeccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-C-ccHHHH
Confidence 99987762 22222 111111111122346677777776654432 35789999999999998 3 256666
Q ss_pred HHHHHHhCC-CCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCc
Q psy11867 268 SIRIQKRLP-SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQ 346 (399)
Q Consensus 268 ~~~i~~~l~-~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k 346 (399)
+..+...++ +++|+++||||++..+..++. .++..+.+..... . .+...+...+.. ..++
T Consensus 297 ~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~-------------~--~~~~~ll~~l~~-~~~~ 357 (618)
T 2whx_A 297 RGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIP-------------E--RSWNTGFDWITD-YQGK 357 (618)
T ss_dssp HHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCC-------------S--SCCSSSCHHHHH-CCSC
T ss_pred HHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCC-------------H--HHHHHHHHHHHh-CCCC
Confidence 666666664 689999999999876543322 2333333322110 0 000111112222 2579
Q ss_pred EEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 347 AMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 347 ~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+||||++++.|+.+++.|.+.|+++..+||+ +|.++++.|++|+.+|||
T Consensus 358 ~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLV 406 (618)
T 2whx_A 358 TVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVV 406 (618)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEE
T ss_pred EEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEE
Confidence 9999999999999999999999999999995 788999999999999986
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.96 E-value=3.5e-30 Score=254.28 Aligned_cols=237 Identities=17% Similarity=0.178 Sum_probs=165.7
Q ss_pred CCCCChHHHHHHhhhhhcCCCCcE-EEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 122 GFYAPSKIQETALPTLLADPPHNM-IAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 122 g~~~p~~iQ~~ai~~ll~~~g~~v-i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
|+.+|+|+|+ ++|.++++ +++ +++||||||||++|++|++..+.. .++++||++||++||.|+++.++
T Consensus 1 G~~q~~~iq~-~i~~~l~~--~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRK--KRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGST--TCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhc--CCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhc------
Confidence 7889999985 79999984 555 999999999999999999876644 45789999999999999999874
Q ss_pred CCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHH-HhCCCCC
Q psy11867 201 TDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQ-KRLPSDC 279 (399)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~-~~l~~~~ 279 (399)
+..+.+.... ..........|.++|++.+.+.+... ..+.+++++||||||++ +. .+......+. ...++++
T Consensus 70 -g~~v~~~~~~--~~~~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~-~~~~~~~~~~~~~~~~~~ 142 (451)
T 2jlq_A 70 -GLPIRYQTPA--VKSDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DP-CSVAARGYISTRVEMGEA 142 (451)
T ss_dssp -TSCEEECCTT--CSCCCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SH-HHHHHHHHHHHHHHTTSC
T ss_pred -Cceeeeeecc--ccccCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-Cc-chHHHHHHHHHhhcCCCc
Confidence 2222222211 11112234469999999998876543 45789999999999987 21 1222222222 2235689
Q ss_pred cEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHH
Q psy11867 280 QIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAW 359 (399)
Q Consensus 280 q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~ 359 (399)
|+++||||++..+..+ +..++..+...... +. ..| ..+... +.. ..+++||||++++.|+.
T Consensus 143 ~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~---p~--~~~------~~~~~~----l~~-~~~~~lVF~~s~~~a~~ 203 (451)
T 2jlq_A 143 AAIFMTATPPGSTDPF---PQSNSPIEDIEREI---PE--RSW------NTGFDW----ITD-YQGKTVWFVPSIKAGND 203 (451)
T ss_dssp EEEEECSSCTTCCCSS---CCCSSCEEEEECCC---CS--SCC------SSSCHH----HHH-CCSCEEEECSSHHHHHH
T ss_pred eEEEEccCCCccchhh---hcCCCceEecCccC---Cc--hhh------HHHHHH----HHh-CCCCEEEEcCCHHHHHH
Confidence 9999999998754332 22344433332110 00 001 011111 222 24699999999999999
Q ss_pred HHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 360 LAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 360 l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+++.|.+.|+.+..+||++. ..+++.|++|+.+|||
T Consensus 204 l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLV 239 (451)
T 2jlq_A 204 IANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVV 239 (451)
T ss_dssp HHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEE
T ss_pred HHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEE
Confidence 99999999999999999864 5799999999999986
No 60
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=9.8e-31 Score=268.03 Aligned_cols=236 Identities=16% Similarity=0.216 Sum_probs=158.4
Q ss_pred HHHHcCCC-----CChHHHH-----HHhhhhh------cCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe
Q psy11867 117 GVYEMGFY-----APSKIQE-----TALPTLL------ADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA 180 (399)
Q Consensus 117 ~l~~~g~~-----~p~~iQ~-----~ai~~ll------~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 180 (399)
+++.+||. +||++|. ++||.++ + |+|++++||||||||++|++|++..+.. .+.++||++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~--g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lila 277 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKK--RQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVLA 277 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGST--TCEEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEc
Confidence 44556776 8999999 9999988 5 7999999999999999999999987654 457899999
Q ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhcc-------ccccCCceeEEEEe
Q psy11867 181 PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKY-------RFFDLSKIKVFVLD 253 (399)
Q Consensus 181 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~-------~~~~~~~~~~lViD 253 (399)
||++||.|+++.++.+. +. +. ...+. .++||+++++++... ....++++++||||
T Consensus 278 PTr~La~Q~~~~l~~~~-----i~--~~--~~~l~---------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViD 339 (673)
T 2wv9_A 278 PTRVVAAEMAEALRGLP-----VR--YL--TPAVQ---------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMD 339 (673)
T ss_dssp SSHHHHHHHHHHTTTSC-----CE--EC--CC------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEE
T ss_pred cHHHHHHHHHHHHhcCC-----ee--ee--ccccc---------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEe
Confidence 99999999999887542 11 11 11010 155555554332111 11357899999999
Q ss_pred chhhHhhcCCchHHHHHHHHhC-CCCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHH
Q psy11867 254 EADVMIATQGHQDFSIRIQKRL-PSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKF 332 (399)
Q Consensus 254 Eah~l~~~~~~~~~~~~i~~~l-~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~ 332 (399)
|||++.. .+......+...+ +..+|+++||||++..+..+... ..|+. .+.. .+.. ..+.
T Consensus 340 EaH~~~~--~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~~-------------~~~~-~~~~ 400 (673)
T 2wv9_A 340 EAHFTDP--ASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH-DVSS-------------EIPD-RAWS 400 (673)
T ss_dssp STTCCCH--HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE-EEEC-------------CCCS-SCCS
T ss_pred CCcccCc--cHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE-EEee-------------ecCH-HHHH
Confidence 9999811 1122222333333 26799999999998664332211 11211 1100 0000 0011
Q ss_pred HHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 333 EAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 333 ~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+..+.. ..+++||||++++.|+.+++.|+..|+++..+||+ +|..+++.|++|+++|||
T Consensus 401 ~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLV 461 (673)
T 2wv9_A 401 SGFEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVI 461 (673)
T ss_dssp SCCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEE
T ss_pred HHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEE
Confidence 11112222 35799999999999999999999999999999994 899999999999999986
No 61
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.95 E-value=1.7e-28 Score=243.89 Aligned_cols=242 Identities=17% Similarity=0.172 Sum_probs=175.1
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..|+++|.++++.+++ ++++++++|||+|||++|+.++... +.++|||+|+++|+.|+.+.++++ ++
T Consensus 92 ~~l~~~Q~~ai~~i~~--~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~ 158 (472)
T 2fwr_A 92 ISLRDYQEKALERWLV--DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GE 158 (472)
T ss_dssp CCBCHHHHHHHHHHTT--TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG-----CG
T ss_pred CCcCHHHHHHHHHHHh--cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC-----CC
Confidence 3799999999999998 5789999999999999999998865 456999999999999999999884 34
Q ss_pred E-EEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEE
Q psy11867 204 S-VRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM 282 (399)
Q Consensus 204 ~-~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l 282 (399)
. +....|+.. ...+|+|+||+++...... ...+++++|+||||++.+. .+.. +...+ +..+++
T Consensus 159 ~~v~~~~g~~~------~~~~Ivv~T~~~l~~~~~~----~~~~~~liIvDEaH~~~~~-~~~~----~~~~~-~~~~~l 222 (472)
T 2fwr_A 159 EYVGEFSGRIK------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAE-SYVQ----IAQMS-IAPFRL 222 (472)
T ss_dssp GGEEEBSSSCB------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEETGGGTTST-TTHH----HHHTC-CCSEEE
T ss_pred cceEEECCCcC------CcCCEEEEEcHHHHHHHHH----hcCCCCEEEEECCcCCCCh-HHHH----HHHhc-CCCeEE
Confidence 4 555555442 2467999999998776432 1246899999999998754 4443 44444 467899
Q ss_pred EEEeeCCh-------------------hHHHHHHhhCCCCeEEec--c--cccc----------------------cccc
Q psy11867 283 LFSATYDK-------------------EVMEFAQDMVPNPLIIKL--K--REEE----------------------SLDN 317 (399)
Q Consensus 283 ~~SAT~~~-------------------~v~~~~~~~~~~p~~i~~--~--~~~~----------------------~~~~ 317 (399)
++|||... ....+...++..+....+ . .... ....
T Consensus 223 ~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (472)
T 2fwr_A 223 GLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED 302 (472)
T ss_dssp EEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS
T ss_pred EEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 99999762 233332333333222111 0 0000 0000
Q ss_pred eeEEEE--------------------EeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCC
Q psy11867 318 IKQHYV--------------------MCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGE 377 (399)
Q Consensus 318 i~~~~~--------------------~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~ 377 (399)
+.+.+. .......|...+.+++.....+++||||++++.++.+++.|. +..+||+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~ 377 (472)
T 2fwr_A 303 FNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHR 377 (472)
T ss_dssp STTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSS
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCC
Confidence 000000 001124577888888888777899999999999999999883 6789999
Q ss_pred CCHHHHHHHHHHHhcCCCcccC
Q psy11867 378 LTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 378 ~~~~~R~~v~~~F~~G~~~ILV 399 (399)
++..+|.+++++|++|+++|||
T Consensus 378 ~~~~~R~~~~~~F~~g~~~vLv 399 (472)
T 2fwr_A 378 TSREEREEILEGFRTGRFRAIV 399 (472)
T ss_dssp SCSHHHHTHHHHHHHSSCSBCB
T ss_pred CCHHHHHHHHHHHhCCCCCEEE
Confidence 9999999999999999999986
No 62
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=3.1e-28 Score=246.46 Aligned_cols=225 Identities=17% Similarity=0.163 Sum_probs=158.4
Q ss_pred ChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEE
Q psy11867 126 PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSV 205 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~ 205 (399)
+.++|..+++.+.. +++++++||||||||.+|.+|+++. +.++||++|||+||.|+++.+.+... ..+
T Consensus 218 ~~~~q~~i~~~L~~--~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~g----~~v 285 (666)
T 3o8b_A 218 VFTDNSSPPAVPQS--FQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAHG----IDP 285 (666)
T ss_dssp SCCCCCSCCCCCSS--CEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHHS----CCC
T ss_pred cHHHHHHHHHHHHc--CCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHhC----CCe
Confidence 33445554454444 7999999999999999999999862 45799999999999999988776542 233
Q ss_pred EEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCc--EEE
Q psy11867 206 RYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ--IML 283 (399)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q--~l~ 283 (399)
...+|+.. .....+|+|+||++|+. ...+.++++++|||||||++. . ++...+..+++.++...| +++
T Consensus 286 g~~vG~~~----~~~~~~IlV~TPGrLl~----~~~l~l~~l~~lVlDEAH~l~-~-~~~~~l~~Il~~l~~~~~~llil 355 (666)
T 3o8b_A 286 NIRTGVRT----ITTGAPVTYSTYGKFLA----DGGCSGGAYDIIICDECHSTD-S-TTILGIGTVLDQAETAGARLVVL 355 (666)
T ss_dssp EEECSSCE----ECCCCSEEEEEHHHHHH----TTSCCTTSCSEEEETTTTCCS-H-HHHHHHHHHHHHTTTTTCSEEEE
T ss_pred eEEECcEe----ccCCCCEEEECcHHHHh----CCCcccCcccEEEEccchhcC-c-cHHHHHHHHHHhhhhcCCceEEE
Confidence 44455543 24567899999999843 356678899999999998763 2 566667788888887776 778
Q ss_pred EEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHH
Q psy11867 284 FSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEK 363 (399)
Q Consensus 284 ~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~ 363 (399)
||||++..+. ...|....+..... ..+ ..+ .. ... +.....+++||||++++.|+.+++.
T Consensus 356 ~SAT~~~~i~------~~~p~i~~v~~~~~--~~i-~~~---~~-~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~ 415 (666)
T 3o8b_A 356 ATATPPGSVT------VPHPNIEEVALSNT--GEI-PFY---GK-AIP-------IEAIRGGRHLIFCHSKKKCDELAAK 415 (666)
T ss_dssp EESSCTTCCC------CCCTTEEEEECBSC--SSE-EET---TE-EEC-------GGGSSSSEEEEECSCHHHHHHHHHH
T ss_pred ECCCCCcccc------cCCcceEEEeeccc--chh-HHH---Hh-hhh-------hhhccCCcEEEEeCCHHHHHHHHHH
Confidence 8999987421 12222211111000 000 000 00 000 1223568999999999999999999
Q ss_pred HHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 364 MSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 364 L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
|++.|+++..+||+|++++ |+++..+|||
T Consensus 416 L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLV 444 (666)
T 3o8b_A 416 LSGLGINAVAYYRGLDVSV-------IPTIGDVVVV 444 (666)
T ss_dssp HHTTTCCEEEECTTSCGGG-------SCSSSCEEEE
T ss_pred HHhCCCcEEEecCCCCHHH-------HHhCCCcEEE
Confidence 9999999999999999875 4556668875
No 63
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.94 E-value=3e-27 Score=231.91 Aligned_cols=220 Identities=16% Similarity=0.180 Sum_probs=148.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|+++++++|||||||++|++|+++.+.. .+.+++|++||++||.|+++.++ ++.+.+..++.. ......
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~--~~~~~~ 70 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQ--SERTGN 70 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC-----------CC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCcc--ccCCCC
Confidence 7999999999999999999999966543 45689999999999999998775 233443333311 111122
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHh-CCCCCcEEEEEeeCChhHHHHHHhhC
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKR-LPSDCQIMLFSATYDKEVMEFAQDMV 300 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~-l~~~~q~l~~SAT~~~~v~~~~~~~~ 300 (399)
.-+.+.|.+.+.+.+.. ...+++++++|+||||++. . ++......+... .+..+|+++||||+++.+..+...
T Consensus 71 ~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~~-~-~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~-- 144 (431)
T 2v6i_A 71 EIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFLD-P-ASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS-- 144 (431)
T ss_dssp CSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCCS-H-HHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC--
T ss_pred ceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccCC-c-cHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC--
Confidence 34677788888765544 3458899999999999972 1 233333333333 256899999999998753222111
Q ss_pred CCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCH
Q psy11867 301 PNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTV 380 (399)
Q Consensus 301 ~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 380 (399)
..|+. .+.. ... ..+...+..++... .+++||||++++.|+.+++.|++.|+++..+||+
T Consensus 145 ~~~i~-~~~~-------------~~~--~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~--- 204 (431)
T 2v6i_A 145 NSPII-DEET-------------RIP--DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK--- 204 (431)
T ss_dssp SSCCE-EEEC-------------CCC--SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT---
T ss_pred CCcee-eccc-------------cCC--HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc---
Confidence 11111 1100 000 00111122233332 5799999999999999999999999999999997
Q ss_pred HHHHHHHHHHhcCCCcccC
Q psy11867 381 EQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 381 ~~R~~v~~~F~~G~~~ILV 399 (399)
+|.++++.|++|+++|||
T Consensus 205 -~r~~~~~~f~~g~~~vLV 222 (431)
T 2v6i_A 205 -TFESEYPKCKSEKWDFVI 222 (431)
T ss_dssp -THHHHTTHHHHSCCSEEE
T ss_pred -cHHHHHHhhcCCCCeEEE
Confidence 688999999999999986
No 64
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.94 E-value=5.2e-29 Score=244.94 Aligned_cols=213 Identities=16% Similarity=0.159 Sum_probs=137.1
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|+|++++||||||||++|++|++..+.. .+++++|++||++||.|+++.++.+ .+.+.. ..+
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~~--~~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~--~~~------- 69 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHT--QAF------- 69 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTS-------CEEEES--SCC-------
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHh--cCCeEEEEcchHHHHHHHHHHHhcC-------CeEEec--ccc-------
Confidence 7999999999999999999999987654 3568999999999999999988743 122111 100
Q ss_pred CcEEEeCchhHHHhhhcc-------ccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC-CCCCcEEEEEeeCChhHH
Q psy11867 222 EQIIIGTPGKVLDWGLKY-------RFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL-PSDCQIMLFSATYDKEVM 293 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~-------~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~l~~SAT~~~~v~ 293 (399)
-.|+||+++++++... ....+++++++|+||||++ +. .+...+..+...+ +.++|+++||||+++.+.
T Consensus 70 --~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~-~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~ 145 (440)
T 1yks_A 70 --SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DP-ASIAARGWAAHRARANESATILMTATPPGTSD 145 (440)
T ss_dssp --CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SH-HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred --eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Cc-chHHHHHHHHHHhccCCceEEEEeCCCCchhh
Confidence 1378888776543221 1123789999999999998 21 2222222222222 367999999999987644
Q ss_pred HHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEE
Q psy11867 294 EFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGL 373 (399)
Q Consensus 294 ~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~ 373 (399)
.+... ..++.. ....+.. ..+...+..+.. ..+++||||++++.|+.+++.|+..|+++..
T Consensus 146 ~~~~~--~~~~~~--------------~~~~~~~-~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~ 206 (440)
T 1yks_A 146 EFPHS--NGEIED--------------VQTDIPS-EPWNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVV 206 (440)
T ss_dssp SSCCC--SSCEEE--------------EECCCCS-SCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhhc--CCCeeE--------------eeeccCh-HHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 33221 111111 0001111 000011111222 2479999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 374 LSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 374 lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+|| ++|..+++.|++|+++|||
T Consensus 207 lhg----~~R~~~~~~F~~g~~~vLV 228 (440)
T 1yks_A 207 LNR----KTFEREYPTIKQKKPDFIL 228 (440)
T ss_dssp CCS----SSCC--------CCCSEEE
T ss_pred ecc----hhHHHHHhhhcCCCceEEE
Confidence 999 4799999999999999986
No 65
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.94 E-value=1.5e-26 Score=236.28 Aligned_cols=258 Identities=16% Similarity=0.160 Sum_probs=145.9
Q ss_pred CCChHHHHHHhhhhhc---CCCCcEEEEccCCCCceehhHHHHHHhhCCC------CCCCeEEEEeCcHHHHHHHH-HHH
Q psy11867 124 YAPSKIQETALPTLLA---DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS------IQEPQVLCLAPTYELAIQIG-EVV 193 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~---~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~------~~~~~~lil~Pt~~La~Q~~-~~~ 193 (399)
..|+++|.++++.++. ..+++++++++||||||++++..+...+... ...+++|||+||++|+.|++ +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3699999999999875 1157799999999999999765554444322 15678999999999999999 777
Q ss_pred HHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhc---cccccCCceeEEEEechhhHhhcCCchHHHHH
Q psy11867 194 AKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLK---YRFFDLSKIKVFVLDEADVMIATQGHQDFSIR 270 (399)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~---~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~ 270 (399)
+.++.. +....++ ......+|+|+||++|...... .+.+...++++||+||||++... .......
T Consensus 257 ~~~~~~-----~~~~~~~-----~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~--~~~~~~~ 324 (590)
T 3h1t_A 257 TPFGDA-----RHKIEGG-----KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR--DNSNWRE 324 (590)
T ss_dssp TTTCSS-----EEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------CHH
T ss_pred Hhcchh-----hhhhhcc-----CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc--chHHHHH
Confidence 766432 1111111 1234568999999999876432 23445678999999999998642 1233455
Q ss_pred HHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCeEE------------------eccccccccc--------------ce
Q psy11867 271 IQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLII------------------KLKREEESLD--------------NI 318 (399)
Q Consensus 271 i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i------------------~~~~~~~~~~--------------~i 318 (399)
++..++ ..++++||||...........++..++.. .+.... ... .+
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEV-DAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETT-CC-----------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeee-ecccccccccccccccccc
Confidence 666665 57899999996643222222223222211 111000 000 00
Q ss_pred eEEEEEeCCh----------hhHHHHHHHHhcc-CCCCcEEEEecchHhHHHHHHHHHHCCC--------eEEEEcCCCC
Q psy11867 319 KQHYVMCKNI----------DEKFEAVSNIYGV-VTIGQAMIFCHTRKTAAWLAEKMSKEGL--------NVGLLSGELT 379 (399)
Q Consensus 319 ~~~~~~~~~~----------~~k~~~l~~ll~~-~~~~k~IIF~~s~~~a~~l~~~L~~~g~--------~v~~lhg~~~ 379 (399)
.......... ......+..++.. ...+++||||+++++|+.+++.|.+.+. .+..+||+++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 0000000000 0011223333433 3447999999999999999999987543 3788999986
Q ss_pred HHHHHHHHHHHhcCCCc
Q psy11867 380 VEQRLSILDRFREGEFK 396 (399)
Q Consensus 380 ~~~R~~v~~~F~~G~~~ 396 (399)
+ +|..++++|++|+.+
T Consensus 483 ~-~r~~~l~~F~~~~~~ 498 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETS 498 (590)
T ss_dssp H-HHHHHHHHHHCTTCC
T ss_pred H-HHHHHHHHHhCCCCC
Confidence 4 799999999998865
No 66
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.93 E-value=4.2e-27 Score=232.64 Aligned_cols=222 Identities=18% Similarity=0.234 Sum_probs=148.9
Q ss_pred hhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENL 214 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (399)
+.++.+ +++++++||||||||++|++|++..+.. .+.++||++||++||.|+++.++. ..+....+. .
T Consensus 15 ~~~l~~-~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~~--~ 82 (459)
T 2z83_A 15 PNMLRK-RQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALRG-------LPVRYQTSA--V 82 (459)
T ss_dssp CGGGST-TCEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTTT-------SCEEECC-----
T ss_pred HHHHhc-CCcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhcC-------ceEeEEecc--c
Confidence 444444 7999999999999999999999987753 356899999999999999998862 222221111 1
Q ss_pred hhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH-----hhcCCchHHHHHHHHhCCCCCcEEEEEeeCC
Q psy11867 215 ERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM-----IATQGHQDFSIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 215 ~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l-----~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
........-+.+.|.+.+...+.. ...++++++|||||||++ ... ++.. .+. ..+..|+++||||++
T Consensus 83 ~~~~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~-~~~~---~~~--~~~~~~~il~SAT~~ 154 (459)
T 2z83_A 83 QREHQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAAR-GYIA---TKV--ELGEAAAIFMTATPP 154 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHH-HHHH---HHH--HTTSCEEEEECSSCT
T ss_pred ccCCCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHH-HHHH---HHh--ccCCccEEEEEcCCC
Confidence 111112234777888887766543 345889999999999983 321 1211 111 236899999999998
Q ss_pred hhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCC
Q psy11867 290 KEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGL 369 (399)
Q Consensus 290 ~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~ 369 (399)
..+..+... ..|+...... .. ..........+ ... .+++||||++++.|+.+++.|...|+
T Consensus 155 ~~~~~~~~~--~~pi~~~~~~----~~--------~~~~~~~~~~l----~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~ 215 (459)
T 2z83_A 155 GTTDPFPDS--NAPIHDLQDE----IP--------DRAWSSGYEWI----TEY-AGKTVWFVASVKMGNEIAMCLQRAGK 215 (459)
T ss_dssp TCCCSSCCC--SSCEEEEECC----CC--------SSCCSSCCHHH----HHC-CSCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cchhhhccC--CCCeEEeccc----CC--------cchhHHHHHHH----Hhc-CCCEEEEeCChHHHHHHHHHHHhcCC
Confidence 764332211 2333221100 00 00001111222 222 57999999999999999999999999
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 370 NVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 370 ~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+..+||+ +|..+++.|++|+.+|||
T Consensus 216 ~v~~lh~~----~R~~~~~~f~~g~~~iLV 241 (459)
T 2z83_A 216 KVIQLNRK----SYDTEYPKCKNGDWDFVI 241 (459)
T ss_dssp CEEEESTT----CCCCCGGGSSSCCCSEEE
T ss_pred cEEecCHH----HHHHHHhhccCCCceEEE
Confidence 99999995 788999999999999986
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.91 E-value=5.8e-25 Score=224.81 Aligned_cols=219 Identities=15% Similarity=0.126 Sum_probs=149.9
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhh-cc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK-KI 220 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 220 (399)
|++++++||||||||+.++ ..+... ..++|++||++||.|+++.++++ ++.+....|+....... ..
T Consensus 155 rk~vlv~apTGSGKT~~al----~~l~~~---~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~TpGr 222 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAI----QKYFSA---KSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTVQPNGK 222 (677)
T ss_dssp CEEEEEECCTTSSHHHHHH----HHHHHS---SSEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECCSTTCC
T ss_pred CCEEEEEcCCCCCHHHHHH----HHHHhc---CCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEecCCCc
Confidence 7999999999999998333 333222 23699999999999999999886 44566666665431110 11
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC-CCCcEEEEEeeCChhHHHHHHhh
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP-SDCQIMLFSATYDKEVMEFAQDM 299 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~l~~SAT~~~~v~~~~~~~ 299 (399)
..+++++|++.+. ....++++||||||++.+. ++...+..++..++ ...+++++|||.+ .+..+....
T Consensus 223 ~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~-~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l~~~~ 291 (677)
T 3rc3_A 223 QASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDP-ARGWAWTRALLGLCAEEVHLCGEPAAID-LVMELMYTT 291 (677)
T ss_dssp CCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCT-TTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHHHHHH
T ss_pred ccceeEecHhHhh---------hcccCCEEEEecceecCCc-cchHHHHHHHHccCccceEEEeccchHH-HHHHHHHhc
Confidence 2356666664321 2467899999999999764 66666677777776 7889999999953 344444433
Q ss_pred CCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCC
Q psy11867 300 VPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELT 379 (399)
Q Consensus 300 ~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 379 (399)
..+..+...... ... .+ ... . + ..+... ....||||++++.++.+++.|.+.|+.+..+||+|+
T Consensus 292 -~~~~~v~~~~r~---~~l--~~--~~~---~---l-~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~ 355 (677)
T 3rc3_A 292 -GEEVEVRDYKRL---TPI--SV--LDH---A---L-ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLP 355 (677)
T ss_dssp -TCCEEEEECCCS---SCE--EE--CSS---C---C-CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSC
T ss_pred -CCceEEEEeeec---chH--HH--HHH---H---H-HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCC
Confidence 333333211100 000 00 000 0 0 011112 245689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCCcccC
Q psy11867 380 VEQRLSILDRFRE--GEFKIYS 399 (399)
Q Consensus 380 ~~~R~~v~~~F~~--G~~~ILV 399 (399)
+.+|..+++.|++ |+.+|||
T Consensus 356 ~~~R~~~~~~F~~~~g~~~VLV 377 (677)
T 3rc3_A 356 PGTKLAQAKKFNDPNDPCKILV 377 (677)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEE
T ss_pred HHHHHHHHHHHHccCCCeEEEE
Confidence 9999999999999 9899986
No 68
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.91 E-value=4e-24 Score=192.75 Aligned_cols=181 Identities=21% Similarity=0.225 Sum_probs=130.2
Q ss_pred HHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC--CCCeEEEEeCcHHHHHHH
Q psy11867 112 PELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI--QEPQVLCLAPTYELAIQI 189 (399)
Q Consensus 112 ~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~--~~~~~lil~Pt~~La~Q~ 189 (399)
+.+.+.+...+...++++|.++++.+.. |++++++||||||||+++.++++....... ...++++++|+++|+.|+
T Consensus 48 ~~~~~~~~~~~~~p~~~~q~~~i~~i~~--g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 48 HDLQAILQERELLPVKKFESEILEAISQ--NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp HHHHHHHHHHHTSGGGGGHHHHHHHHHH--CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHH
Confidence 3333334444455689999999999998 799999999999999999999887654332 245899999999999999
Q ss_pred HHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH-hhcCCch-HH
Q psy11867 190 GEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM-IATQGHQ-DF 267 (399)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l-~~~~~~~-~~ 267 (399)
.+.+........+..+.+....... ......+|+|+|||+|++++.. .+++++++|+||||++ ++. ++. ..
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~-~~~~~~ 198 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFESI--LPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINT-DFLLVV 198 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEEE--CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHH-HHHHHH
T ss_pred HHHHHHHhccccCceEEEeechhhc--cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcch-HHHHHH
Confidence 9888765543223333333322211 1124578999999999998754 4889999999999986 443 344 44
Q ss_pred HHHHHHhCCCCCcEEEEEeeCChhHHHHHHhhCCCCe
Q psy11867 268 SIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPL 304 (399)
Q Consensus 268 ~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~~~~p~ 304 (399)
+..+.... ++.|+++||||++... +.+.+...|+
T Consensus 199 l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 199 LRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 55555554 5799999999999876 5555555554
No 69
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.91 E-value=2.5e-24 Score=230.01 Aligned_cols=270 Identities=15% Similarity=0.155 Sum_probs=179.6
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..|+|+|.+++..++...+.+++++++||+|||++++..+...+..+ ...++|||||+ .|+.|+.+.+.+.. ++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~-sLl~Qw~~E~~~~f----~l 225 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPE-TLQHQWLVEMLRRF----NL 225 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCT-TTHHHHHHHHHHHS----CC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCH-HHHHHHHHHHHHHh----CC
Confidence 47999999999999876567899999999999999988777666543 34579999999 99999999986654 23
Q ss_pred EEEEEEcCchhhh-----hhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhC-CC
Q psy11867 204 SVRYAVRGENLER-----NKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL-PS 277 (399)
Q Consensus 204 ~~~~~~~~~~~~~-----~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l-~~ 277 (399)
.+....++..... ......+|+|+|++.+.........+...++++||+||||++............++..+ ..
T Consensus 226 ~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 3333333322111 11235689999999886542222334566899999999999864322221222233322 24
Q ss_pred CCcEEEEEeeCCh----hHHHHHHhhCCCC--------------------------------------------------
Q psy11867 278 DCQIMLFSATYDK----EVMEFAQDMVPNP-------------------------------------------------- 303 (399)
Q Consensus 278 ~~q~l~~SAT~~~----~v~~~~~~~~~~p-------------------------------------------------- 303 (399)
..+++++|||.-. ++..+.....++.
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHH
Confidence 5679999999521 1111111110000
Q ss_pred ------------------------------eEEeccccc-cc--ccceeEEEE---------------------------
Q psy11867 304 ------------------------------LIIKLKREE-ES--LDNIKQHYV--------------------------- 323 (399)
Q Consensus 304 ------------------------------~~i~~~~~~-~~--~~~i~~~~~--------------------------- 323 (399)
..+.-.... .. .........
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRAR 465 (968)
T ss_dssp GGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTH
T ss_pred HhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHh
Confidence 000000000 00 000000000
Q ss_pred -----------------EeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHH-CCCeEEEEcCCCCHHHHHH
Q psy11867 324 -----------------MCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSK-EGLNVGLLSGELTVEQRLS 385 (399)
Q Consensus 324 -----------------~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~-~g~~v~~lhg~~~~~~R~~ 385 (399)
.......|...+..++.....+++||||++++.++.++..|.. .|+++..+||+|++.+|..
T Consensus 466 ~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~ 545 (968)
T 3dmq_A 466 DMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDR 545 (968)
T ss_dssp HHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHH
T ss_pred hhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 0112245888899999887788999999999999999999985 5999999999999999999
Q ss_pred HHHHHhcCC--CcccC
Q psy11867 386 ILDRFREGE--FKIYS 399 (399)
Q Consensus 386 v~~~F~~G~--~~ILV 399 (399)
++++|++|+ ++|||
T Consensus 546 ~l~~F~~g~~~~~vLv 561 (968)
T 3dmq_A 546 AAAWFAEEDTGAQVLL 561 (968)
T ss_dssp HHHHHHSTTSSCEEEE
T ss_pred HHHHHhCCCCcccEEE
Confidence 999999998 98886
No 70
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=2.3e-24 Score=191.22 Aligned_cols=163 Identities=17% Similarity=0.069 Sum_probs=115.5
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCC---CCCCeEEEEeCcHHHHHH-HHHHHHHH
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPS---IQEPQVLCLAPTYELAIQ-IGEVVAKM 196 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~---~~~~~~lil~Pt~~La~Q-~~~~~~~~ 196 (399)
.+...|+++|.++++.++. ++++++++|||+|||++|+++++..+... ..+.++||++|+++|+.| +.+.++.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALE--GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhc--CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 4556899999999999998 69999999999999999999998776431 235689999999999999 78888888
Q ss_pred hccCCCcEEEEEEcCchhhh---hhccCCcEEEeCchhHHHhhhcccc-----ccCCceeEEEEechhhHhhcCCchHHH
Q psy11867 197 GKHITDLSVRYAVRGENLER---NKKITEQIIIGTPGKVLDWGLKYRF-----FDLSKIKVFVLDEADVMIATQGHQDFS 268 (399)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~IlV~Tp~~l~~~~~~~~~-----~~~~~~~~lViDEah~l~~~~~~~~~~ 268 (399)
... ++.+....|+..... .....++|+|+||++|...+..... +.+.+++++|+||||++.+...+...+
T Consensus 107 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 107 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred hcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 764 456666666543322 1123578999999999988655432 567889999999999997643344433
Q ss_pred HHHHHhC-------------CCCCcEEEEEee
Q psy11867 269 IRIQKRL-------------PSDCQIMLFSAT 287 (399)
Q Consensus 269 ~~i~~~l-------------~~~~q~l~~SAT 287 (399)
..+.... .+..+++++|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3332221 157899999998
No 71
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.90 E-value=8.3e-23 Score=204.39 Aligned_cols=259 Identities=17% Similarity=0.174 Sum_probs=170.9
Q ss_pred CCChHHHHHHhhhhhc--CCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 124 YAPSKIQETALPTLLA--DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~--~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
..|+|+|.++++.+.. ..+++++++++||+|||++++..+.... ......++|||||+ .|+.|+.++++++..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~-~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~--- 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-KENELTPSLVICPL-SVLKNWEEELSKFAP--- 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-HTTCCSSEEEEECS-TTHHHHHHHHHHHCT---
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCCCCEEEEccH-HHHHHHHHHHHHHCC---
Confidence 3699999999987742 1268999999999999999765544443 22344679999995 689999999998864
Q ss_pred CcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcE
Q psy11867 202 DLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQI 281 (399)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~ 281 (399)
.+.+....++.. +......+|+|+|++++..... +....++++|+||||++... .......+..++ ..+.
T Consensus 111 ~~~v~~~~g~~~--~~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~---~~~~~~~l~~l~-~~~~ 180 (500)
T 1z63_A 111 HLRFAVFHEDRS--KIKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNP---QTKIFKAVKELK-SKYR 180 (500)
T ss_dssp TSCEEECSSSTT--SCCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCT---TSHHHHHHHTSC-EEEE
T ss_pred CceEEEEecCch--hccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCH---hHHHHHHHHhhc-cCcE
Confidence 345544444432 2223456899999999865421 34457899999999998532 223344555553 4678
Q ss_pred EEEEeeCCh-h---HHHHHHhhCC--------------------------------CCeEEeccccc----ccccceeEE
Q psy11867 282 MLFSATYDK-E---VMEFAQDMVP--------------------------------NPLIIKLKREE----ESLDNIKQH 321 (399)
Q Consensus 282 l~~SAT~~~-~---v~~~~~~~~~--------------------------------~p~~i~~~~~~----~~~~~i~~~ 321 (399)
+++|||... . +..++....+ .|..++-...+ ..++.....
T Consensus 181 l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~ 260 (500)
T 1z63_A 181 IALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIET 260 (500)
T ss_dssp EEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEE
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEE
Confidence 999999632 1 2211111111 22222211110 112222222
Q ss_pred EEEeCC--------------------------------------------------------hhhHHHHHHHHhccC--C
Q psy11867 322 YVMCKN--------------------------------------------------------IDEKFEAVSNIYGVV--T 343 (399)
Q Consensus 322 ~~~~~~--------------------------------------------------------~~~k~~~l~~ll~~~--~ 343 (399)
.+.+.- ...|...+.+++... .
T Consensus 261 ~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~ 340 (500)
T 1z63_A 261 NVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDE 340 (500)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHcc
Confidence 233321 123444455555443 4
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCcc
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE-GLNVGLLSGELTVEQRLSILDRFREG-EFKI 397 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~~R~~v~~~F~~G-~~~I 397 (399)
..++||||+++..++.++..|... |..+..+||+++..+|.+++++|++| ..++
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~v 396 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKF 396 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCC
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCE
Confidence 579999999999999999999885 99999999999999999999999998 5653
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.90 E-value=8.1e-24 Score=224.98 Aligned_cols=152 Identities=18% Similarity=0.100 Sum_probs=112.6
Q ss_pred CChHHHHHHhhhhhcC------------CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLAD------------PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEV 192 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~------------~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~ 192 (399)
.|+|+|..|++.++.. .+++++++++||||||+++ ++++..+.......++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 5999999999998761 1478999999999999997 56666665544456899999999999999999
Q ss_pred HHHHhccCCCcEEEEEEcCc---hhhhhh-ccCCcEEEeCchhHHHhhhcccc-ccCCceeEEEEechhhHhhcCCchHH
Q psy11867 193 VAKMGKHITDLSVRYAVRGE---NLERNK-KITEQIIIGTPGKVLDWGLKYRF-FDLSKIKVFVLDEADVMIATQGHQDF 267 (399)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~IlV~Tp~~l~~~~~~~~~-~~~~~~~~lViDEah~l~~~~~~~~~ 267 (399)
++.++... ..++. .+.... ....+|+|+||++|..++..... ..+....+||+||||++.. ...
T Consensus 350 f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~----~~~ 418 (1038)
T 2w00_A 350 YQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF----GEA 418 (1038)
T ss_dssp HHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH----HHH
T ss_pred HHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc----hHH
Confidence 98876431 11222 222222 34678999999999887543321 2355789999999999753 233
Q ss_pred HHHHHHhCCCCCcEEEEEeeCC
Q psy11867 268 SIRIQKRLPSDCQIMLFSATYD 289 (399)
Q Consensus 268 ~~~i~~~l~~~~q~l~~SAT~~ 289 (399)
...+...++ +.++++||||..
T Consensus 419 ~~~I~~~~p-~a~~lgfTATP~ 439 (1038)
T 2w00_A 419 QKNLKKKFK-RYYQFGFTGTPI 439 (1038)
T ss_dssp HHHHHHHCS-SEEEEEEESSCC
T ss_pred HHHHHHhCC-cccEEEEeCCcc
Confidence 456667775 589999999975
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=7e-22 Score=201.29 Aligned_cols=130 Identities=19% Similarity=0.185 Sum_probs=110.2
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
+|+ .|+++|..++|.++. |+ |++++||+|||++|.+|++..... +.+++|++||++||.|.++++..++.++
T Consensus 76 lG~-~Pt~VQ~~~ip~Llq--G~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHE--GK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHT--TS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred hCC-CCcHHHHhhcccccC--Cc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 788 999999999999998 56 999999999999999999654433 3469999999999999999999999887
Q ss_pred CCcEEEEEEcCchhhh-hhccCCcEEEeCchhH-HHhhhccc-----cccCC---ceeEEEEechhhHh
Q psy11867 201 TDLSVRYAVRGENLER-NKKITEQIIIGTPGKV-LDWGLKYR-----FFDLS---KIKVFVLDEADVMI 259 (399)
Q Consensus 201 ~~~~~~~~~~~~~~~~-~~~~~~~IlV~Tp~~l-~~~~~~~~-----~~~~~---~~~~lViDEah~l~ 259 (399)
++++.+.+||..... .....++|+||||++| ++++...- .+.++ .+.++|+||+|.|+
T Consensus 148 -GLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp -TCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred -CCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 799999998876432 2345789999999999 78776542 34577 89999999999987
No 74
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.88 E-value=4.5e-23 Score=191.04 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=122.5
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..|+++|.++++.+++ +++.++++|||+|||+++++++...+.. ...++||++||++|+.|+.+.+++++... ..
T Consensus 112 ~~l~~~Q~~ai~~~l~--~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~ 186 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV--NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFS-HA 186 (282)
T ss_dssp CCCCHHHHHHHHHHHH--HSEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCC-GG
T ss_pred cCccHHHHHHHHHHHh--cCCeEEEcCCCCCcHHHHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhcccc-cc
Confidence 4899999999999998 4788999999999999999888876643 23479999999999999999999986543 45
Q ss_pred EEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEE
Q psy11867 204 SVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIML 283 (399)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~ 283 (399)
.+....++...........+|+|+||+++... ....+.+++++|+||||++.. .....++..+....++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~~~-----~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGCCH-----HHHHHHTTTCTTCCEEEE
T ss_pred eEEEEeCCCcchhhhccCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccCCc-----ccHHHHHHHhhcCCeEEE
Confidence 55666666544333335678999999987553 223467899999999999853 355677777777899999
Q ss_pred EEeeCChhH
Q psy11867 284 FSATYDKEV 292 (399)
Q Consensus 284 ~SAT~~~~v 292 (399)
+|||.++..
T Consensus 258 lSATp~~~~ 266 (282)
T 1rif_A 258 LSGSLRDGK 266 (282)
T ss_dssp ECSSCCTTS
T ss_pred EeCCCCCcc
Confidence 999987653
No 75
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.5e-20 Score=194.95 Aligned_cols=261 Identities=16% Similarity=0.178 Sum_probs=173.7
Q ss_pred CChHHHHHHhhhhhc--CCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCC
Q psy11867 125 APSKIQETALPTLLA--DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~--~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 202 (399)
.++|+|.+++..++. ..+++.|++.+||+|||+.++..+...+........+||||| ..|+.|+.+.++++. +.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~---p~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA---PD 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS---TT
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC---CC
Confidence 688999999987751 127899999999999999877666554433333455899999 678899999998876 35
Q ss_pred cEEEEEEcCchhhhh---------------hccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHH
Q psy11867 203 LSVRYAVRGENLERN---------------KKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDF 267 (399)
Q Consensus 203 ~~~~~~~~~~~~~~~---------------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~ 267 (399)
+.+....|+...... .....+|+|+|++.+..... .+....+++||+||||++-. ....
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~---~l~~~~w~~vIvDEaH~lkn---~~s~ 385 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA---ELGSIKWQFMAVDEAHRLKN---AESS 385 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH---HHHTSEEEEEEETTGGGGCC---SSSH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH---HHhcCCcceeehhhhhhhcC---chhH
Confidence 566666665433211 12356899999999976532 23334688999999999842 3334
Q ss_pred HHHHHHhCCCCCcEEEEEeeCC----hhHHHHHHhhCCC-----------------------------CeEEeccccc--
Q psy11867 268 SIRIQKRLPSDCQIMLFSATYD----KEVMEFAQDMVPN-----------------------------PLIIKLKREE-- 312 (399)
Q Consensus 268 ~~~i~~~l~~~~q~l~~SAT~~----~~v~~~~~~~~~~-----------------------------p~~i~~~~~~-- 312 (399)
....+..+. ....+++|||.- .++..++....++ |..++-....
T Consensus 386 ~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~ 464 (800)
T 3mwy_W 386 LYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVE 464 (800)
T ss_dssp HHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGT
T ss_pred HHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhh
Confidence 445555553 455789999951 2333333333222 1111110000
Q ss_pred ccccceeEEEEEeCC-----------------------------------------------------------------
Q psy11867 313 ESLDNIKQHYVMCKN----------------------------------------------------------------- 327 (399)
Q Consensus 313 ~~~~~i~~~~~~~~~----------------------------------------------------------------- 327 (399)
..++......+.+.-
T Consensus 465 ~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 465 KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCS
T ss_pred hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccH
Confidence 001111222222211
Q ss_pred ---------hhhHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q psy11867 328 ---------IDEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFK 396 (399)
Q Consensus 328 ---------~~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ 396 (399)
...|...+..++... ...++||||+....+..|...|...|+.+..+||+++..+|..++++|++|...
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 123555566666543 346999999999999999999999999999999999999999999999997665
No 76
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.83 E-value=4.7e-19 Score=182.02 Aligned_cols=262 Identities=15% Similarity=0.175 Sum_probs=167.5
Q ss_pred CChHHHHHHhhhhhc-------CCCCcEEEEccCCCCceehhHHHHHHhhCCCC----CCCeEEEEeCcHHHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLA-------DPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI----QEPQVLCLAPTYELAIQIGEVV 193 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~-------~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~----~~~~~lil~Pt~~La~Q~~~~~ 193 (399)
.++|+|.+++..+.. ..+.+.|+..+||+|||+.++..+...+.... ...++|||+|+ +|+.|+.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 689999999998852 22678999999999999998777666554322 23469999997 8899999999
Q ss_pred HHHhccCCCcEEEEEEcCchhhhhh-----------ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC
Q psy11867 194 AKMGKHITDLSVRYAVRGENLERNK-----------KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ 262 (399)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~ 262 (399)
+++... .+.+....+|....... ....+|+|+|++.+.... ..+....++++|+||||++-.
T Consensus 134 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~~~~~~vI~DEaH~ikn-- 206 (644)
T 1z3i_X 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA---EVLHKGKVGLVICDEGHRLKN-- 206 (644)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---TTTTTSCCCEEEETTGGGCCT--
T ss_pred HHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH---HHhhcCCccEEEEECceecCC--
Confidence 998754 34444445553321110 124689999999987643 334445788999999999843
Q ss_pred CchHHHHHHHHhCCCCCcEEEEEeeCCh-h---HHH---------------HHHhhC-----------------------
Q psy11867 263 GHQDFSIRIQKRLPSDCQIMLFSATYDK-E---VME---------------FAQDMV----------------------- 300 (399)
Q Consensus 263 ~~~~~~~~i~~~l~~~~q~l~~SAT~~~-~---v~~---------------~~~~~~----------------------- 300 (399)
........+..+. ....+++|||.-. . ++. |.+.+.
T Consensus 207 -~~~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~ 284 (644)
T 1z3i_X 207 -SDNQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKL 284 (644)
T ss_dssp -TCHHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHH
T ss_pred -hhhHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHH
Confidence 2223333334443 4578999999421 0 000 000000
Q ss_pred ------CCCeEEeccccc--ccccceeEEEEEeC----------------------------------------------
Q psy11867 301 ------PNPLIIKLKREE--ESLDNIKQHYVMCK---------------------------------------------- 326 (399)
Q Consensus 301 ------~~p~~i~~~~~~--~~~~~i~~~~~~~~---------------------------------------------- 326 (399)
-.|..++-.... ..++......+.|.
T Consensus 285 ~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~ 364 (644)
T 1z3i_X 285 QELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPA 364 (644)
T ss_dssp HHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHH
Confidence 000011000000 00111111111111
Q ss_pred -------------------------------ChhhHHHHHHHHhcc---CCCCcEEEEecchHhHHHHHHHHHHCCCeEE
Q psy11867 327 -------------------------------NIDEKFEAVSNIYGV---VTIGQAMIFCHTRKTAAWLAEKMSKEGLNVG 372 (399)
Q Consensus 327 -------------------------------~~~~k~~~l~~ll~~---~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~ 372 (399)
....|...+..++.. ....++||||+.+..++.++..|...|+.+.
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~ 444 (644)
T 1z3i_X 365 LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYV 444 (644)
T ss_dssp HHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEE
Confidence 012344444444433 2457999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCc
Q psy11867 373 LLSGELTVEQRLSILDRFREGEFK 396 (399)
Q Consensus 373 ~lhg~~~~~~R~~v~~~F~~G~~~ 396 (399)
.+||+++..+|.+++++|++|...
T Consensus 445 ~l~G~~~~~~R~~~i~~F~~~~~~ 468 (644)
T 1z3i_X 445 RLDGTMSIKKRAKIVERFNNPSSP 468 (644)
T ss_dssp EECSSCCHHHHHHHHHHHHSTTCC
T ss_pred EEeCCCCHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999764
No 77
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.81 E-value=1.8e-18 Score=173.41 Aligned_cols=262 Identities=14% Similarity=0.120 Sum_probs=184.5
Q ss_pred cCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 121 MGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
.|. .|+++|....-.+.. |+ |+...||+|||+++.+|++-.... +..+.|++||..||.|-.+++..+..++
T Consensus 72 lg~-r~~dvQligg~~L~~--G~--iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHE--GK--VAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHT--TC--EEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hCC-CCcHHHHHHHHHHhC--CC--hhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 454 699999999998876 44 999999999999999999855443 3459999999999999999999999887
Q ss_pred CCcEEEEEEcCc---------------------------------------------------hhhhhhccCCcEEEeCc
Q psy11867 201 TDLSVRYAVRGE---------------------------------------------------NLERNKKITEQIIIGTP 229 (399)
Q Consensus 201 ~~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~IlV~Tp 229 (399)
++++.+..... ..++.....++|+.+|.
T Consensus 144 -glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn 222 (822)
T 3jux_A 144 -GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTN 222 (822)
T ss_dssp -TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEH
T ss_pred -CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccC
Confidence 78888877620 11222234578999999
Q ss_pred hhH-HHhhhcc-----ccccCCceeEEEEechhhHhhcC------------Cch--------------------------
Q psy11867 230 GKV-LDWGLKY-----RFFDLSKIKVFVLDEADVMIATQ------------GHQ-------------------------- 265 (399)
Q Consensus 230 ~~l-~~~~~~~-----~~~~~~~~~~lViDEah~l~~~~------------~~~-------------------------- 265 (399)
..| .+++..+ ...-.+.+.+.|+||+|.++=.. ...
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~ 302 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKAR 302 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSS
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccC
Confidence 887 4444332 12235678999999999653100 000
Q ss_pred ---------------------------HHHHHHHH------hCC------------------------------------
Q psy11867 266 ---------------------------DFSIRIQK------RLP------------------------------------ 276 (399)
Q Consensus 266 ---------------------------~~~~~i~~------~l~------------------------------------ 276 (399)
..+..+.. .+.
T Consensus 303 ~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQai 382 (822)
T 3jux_A 303 TIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAI 382 (822)
T ss_dssp CEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHH
T ss_pred eEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHH
Confidence 00000000 000
Q ss_pred -------------------------CCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhH
Q psy11867 277 -------------------------SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEK 331 (399)
Q Consensus 277 -------------------------~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k 331 (399)
--.++.+||+|.......+.+.|-.+ .+.+.. +.....+.+....+.....|
T Consensus 383 EaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-nkp~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 383 EAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPT-HKPMIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCC-SSCCCCEECCCEEESSHHHH
T ss_pred HHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECC-CCCcceeecCcEEEecHHHH
Confidence 01268899999998888877766443 333332 23333444433344566789
Q ss_pred HHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q psy11867 332 FEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGE 394 (399)
Q Consensus 332 ~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~ 394 (399)
...+...+... ...|+||||+|++.++.|+..|.+.|+++.++||+..+.+|..+.+.|+.|.
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~ 524 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGM 524 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCe
Confidence 89888887653 4568999999999999999999999999999999977777776777777774
No 78
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=4.9e-19 Score=159.41 Aligned_cols=138 Identities=18% Similarity=0.116 Sum_probs=106.1
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCc
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~ 203 (399)
..|+++|.++++.+++ ++++++++|||+|||.+++.++... +.+++|++|+++|+.|+++.++++ ++
T Consensus 92 ~~l~~~Q~~ai~~~~~--~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~-----~~ 158 (237)
T 2fz4_A 92 ISLRDYQEKALERWLV--DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GE 158 (237)
T ss_dssp CCCCHHHHHHHHHHTT--TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG-----CG
T ss_pred CCcCHHHHHHHHHHHh--CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC-----CC
Confidence 4899999999999998 5789999999999999998887754 356999999999999999998874 33
Q ss_pred E-EEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEE
Q psy11867 204 S-VRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIM 282 (399)
Q Consensus 204 ~-~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l 282 (399)
. +....++.. ...+|+|+|++.+...... ...+++++||||||++.+. .+. .+...++ ..+++
T Consensus 159 ~~v~~~~g~~~------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~-~~~----~i~~~~~-~~~~l 222 (237)
T 2fz4_A 159 EYVGEFSGRIK------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAE-SYV----QIAQMSI-APFRL 222 (237)
T ss_dssp GGEEEESSSCB------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTT-THH----HHHHTCC-CSEEE
T ss_pred CeEEEEeCCCC------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCCh-HHH----HHHHhcc-CCEEE
Confidence 4 444444432 2457999999998765432 1346899999999998653 332 3455554 67899
Q ss_pred EEEeeCCh
Q psy11867 283 LFSATYDK 290 (399)
Q Consensus 283 ~~SAT~~~ 290 (399)
++|||...
T Consensus 223 ~LSATp~r 230 (237)
T 2fz4_A 223 GLTATFER 230 (237)
T ss_dssp EEEESCC-
T ss_pred EEecCCCC
Confidence 99999764
No 79
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.70 E-value=8.4e-16 Score=157.92 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=76.6
Q ss_pred CCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhcc-C-CCCcEEEEecch
Q psy11867 277 SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGV-V-TIGQAMIFCHTR 354 (399)
Q Consensus 277 ~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~-~-~~~k~IIF~~s~ 354 (399)
...|+++||||.+...... ........+........ .+.+.....+...+...+.. . ...++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDP-----LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCC-----EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCC-----eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3678999999988654222 11111111111110111 11122223344444333322 2 357999999999
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 355 KTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 355 ~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.|+.|++.|...|+++..+||+|++.+|..+++.|+.|+++|||
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLv 494 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLV 494 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEE
Confidence 999999999999999999999999999999999999999999986
No 80
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.67 E-value=6.6e-17 Score=163.20 Aligned_cols=129 Identities=17% Similarity=0.080 Sum_probs=97.1
Q ss_pred CChHHHHHHhhhhhcC--CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCC
Q psy11867 125 APSKIQETALPTLLAD--PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~--~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 202 (399)
.|+|.|.+++..+... .|++++++||||+|||++|++|++. .+++++|++||++|+.|+.+.++.+.... +
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~-~ 75 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKR-N 75 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSS-C
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhc-C
Confidence 7899999987755321 2799999999999999999999997 35689999999999999999999886654 5
Q ss_pred cEEEEEEcCchhh------------------------------------------------------hhhccCCcEEEeC
Q psy11867 203 LSVRYAVRGENLE------------------------------------------------------RNKKITEQIIIGT 228 (399)
Q Consensus 203 ~~~~~~~~~~~~~------------------------------------------------------~~~~~~~~IlV~T 228 (399)
+++....|+..+. +......+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 5555554432210 1112356899999
Q ss_pred chhHHHhhhccccccCCceeEEEEechhhHhh
Q psy11867 229 PGKVLDWGLKYRFFDLSKIKVFVLDEADVMIA 260 (399)
Q Consensus 229 p~~l~~~~~~~~~~~~~~~~~lViDEah~l~~ 260 (399)
++.|++...+..........++||||||.|.+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999875443321224678999999998865
No 81
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.64 E-value=1e-14 Score=149.70 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=77.2
Q ss_pred CCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHH-HhccC-CCCcEEEEecch
Q psy11867 277 SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSN-IYGVV-TIGQAMIFCHTR 354 (399)
Q Consensus 277 ~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~-ll~~~-~~~k~IIF~~s~ 354 (399)
...|+++||||.+....... .......+.......+. + .+.....+...+.. +.... ...++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p~----i-~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DEMVEQIIRPTGLLDPL----I-DVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SSCEEECCCTTCCCCCE----E-EEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHhh----hCeeeeeecccCCCCCe----E-EEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 46899999999886543221 11122211111111111 1 11222233333333 33322 346999999999
Q ss_pred HhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 355 KTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 355 ~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+.|+.|++.|...|+++..+||++++.+|..+++.|++|+++|||
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLV 500 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLV 500 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEE
Confidence 999999999999999999999999999999999999999999986
No 82
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.57 E-value=2e-15 Score=151.92 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=85.4
Q ss_pred cCCCCChHHHHHHhhhhh---cCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 121 MGFYAPSKIQETALPTLL---ADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 121 ~g~~~p~~iQ~~ai~~ll---~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
.|| .|+|+|.+++..+. .. |++++++||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~-~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l~ 75 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKH-GKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLLG 75 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHT-TCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGGT
T ss_pred CCC-CCCHHHHHHHHHHHHHHHc-CCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhcC
Confidence 467 89999999876543 22 7999999999999999999999864 4679999999999999998887753
Q ss_pred ccCCCcEEEEEEcCch--------------------------------------------------hhhhhccCCcEEEe
Q psy11867 198 KHITDLSVRYAVRGEN--------------------------------------------------LERNKKITEQIIIG 227 (399)
Q Consensus 198 ~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~IlV~ 227 (399)
. ++....|... ..+......+|||+
T Consensus 76 ~-----~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 76 L-----KTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp C-----CEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred C-----cEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 1 1111111000 00111235689999
Q ss_pred CchhHHHhhhccccc------cCCceeEEEEechhhHh
Q psy11867 228 TPGKVLDWGLKYRFF------DLSKIKVFVLDEADVMI 259 (399)
Q Consensus 228 Tp~~l~~~~~~~~~~------~~~~~~~lViDEah~l~ 259 (399)
|++.|++........ .+....++||||||.|.
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999998754332111 23567899999999983
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=3.8e-12 Score=108.76 Aligned_cols=87 Identities=54% Similarity=0.963 Sum_probs=82.0
Q ss_pred ccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 313 ESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 313 ~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
.++.++.|+|+.++..+.|...|..++.....+++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 35678999999999877799999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCcccC
Q psy11867 393 GEFKIYS 399 (399)
Q Consensus 393 G~~~ILV 399 (399)
|+.+|||
T Consensus 83 g~~~vLv 89 (175)
T 2rb4_A 83 GKEKVLI 89 (175)
T ss_dssp TSCSEEE
T ss_pred CCCeEEE
Confidence 9999986
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.35 E-value=2.6e-12 Score=111.34 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=76.0
Q ss_pred HhhCCCCeEEecccccccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcC
Q psy11867 297 QDMVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSG 376 (399)
Q Consensus 297 ~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg 376 (399)
..++.+|..+.+........++.|.++.+.. ..|...|.+++.... +++||||++++.++.++..|...|+.+..+||
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKE-EAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp -------------------CCSEEEEEECCG-GGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcCh-HHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4577889999988888888999999998865 679999999988753 68999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcccC
Q psy11867 377 ELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 377 ~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
+|++.+|..+++.|++|+.+|||
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLv 109 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLV 109 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEE
T ss_pred CCCHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999986
No 85
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.33 E-value=6.7e-13 Score=135.24 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=60.3
Q ss_pred CCChHHHHHHhhhh----hcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Q psy11867 124 YAPSKIQETALPTL----LADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH 199 (399)
Q Consensus 124 ~~p~~iQ~~ai~~l----l~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~ 199 (399)
.+|++.|.+.+..+ .+ |++++++||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.++.+...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~--~~~~~~~apTGtGKT~a~l~p~l~~~~~--~~~kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQK--SYGVALESPTGSGKTIMALKSALQYSSE--RKLKVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHH--SSEEEEECCTTSCHHHHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHc--CCCEEEECCCCCCHHHHHHHHHHHhhhh--cCCeEEEECCCHHHHHHHHHHHHHHhhc
Confidence 46899999998644 44 7999999999999999999999988754 3568999999999999999999988654
No 86
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.29 E-value=1.3e-11 Score=105.13 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=77.6
Q ss_pred cccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 314 SLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 314 ~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
++.++.|+|+.+.. +.|...|..+++....+++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 2 ~~~~i~q~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 2 SLHGLQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp ---CCEEEEEECCG-GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEEECCh-HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 35678999998875 67999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CCcccC
Q psy11867 394 EFKIYS 399 (399)
Q Consensus 394 ~~~ILV 399 (399)
+.+|||
T Consensus 81 ~~~vLv 86 (172)
T 1t5i_A 81 QRRILV 86 (172)
T ss_dssp SCSEEE
T ss_pred CCcEEE
Confidence 999986
No 87
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.29 E-value=1.5e-11 Score=103.96 Aligned_cols=84 Identities=30% Similarity=0.597 Sum_probs=77.7
Q ss_pred cceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy11867 316 DNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEF 395 (399)
Q Consensus 316 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~ 395 (399)
.+++|+|+.+...+.|...|..++.....+++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 46889999998766699999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q psy11867 396 KIYS 399 (399)
Q Consensus 396 ~ILV 399 (399)
+|||
T Consensus 82 ~vlv 85 (165)
T 1fuk_A 82 RILI 85 (165)
T ss_dssp SEEE
T ss_pred EEEE
Confidence 9986
No 88
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.28 E-value=1.5e-11 Score=103.69 Aligned_cols=86 Identities=19% Similarity=0.474 Sum_probs=79.2
Q ss_pred ccccceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 313 ESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 313 ~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
....++.|.|+.+.. +.|...|..++.....+++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE-ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCG-GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECCh-HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 456789999998865 7799999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcccC
Q psy11867 393 GEFKIYS 399 (399)
Q Consensus 393 G~~~ILV 399 (399)
|+.+|||
T Consensus 84 g~~~vlv 90 (163)
T 2hjv_A 84 GEYRYLV 90 (163)
T ss_dssp TSCSEEE
T ss_pred CCCeEEE
Confidence 9999986
No 89
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.20 E-value=3.4e-11 Score=103.74 Aligned_cols=89 Identities=21% Similarity=0.320 Sum_probs=70.8
Q ss_pred cccccccceeEEEEEeCChhhHHHHHHHHhccC-CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHH
Q psy11867 310 REEESLDNIKQHYVMCKNIDEKFEAVSNIYGVV-TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILD 388 (399)
Q Consensus 310 ~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~ 388 (399)
....+..++.|.|+.++. ..|...|.+++... ..+++||||++++.|+.++..|...|+.+..+||+|++.+|..+++
T Consensus 12 ~~~~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~ 90 (185)
T 2jgn_A 12 FQGSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 90 (185)
T ss_dssp ----CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHH
T ss_pred ccCCCCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHH
Confidence 344567899999999875 67999999999887 4679999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcccC
Q psy11867 389 RFREGEFKIYS 399 (399)
Q Consensus 389 ~F~~G~~~ILV 399 (399)
.|++|+.+|||
T Consensus 91 ~f~~g~~~vLv 101 (185)
T 2jgn_A 91 QFRSGKSPILV 101 (185)
T ss_dssp HHHHTSSSEEE
T ss_pred HHHcCCCeEEE
Confidence 99999999986
No 90
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.62 E-value=2e-11 Score=103.77 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=77.4
Q ss_pred cceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy11867 316 DNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEF 395 (399)
Q Consensus 316 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~ 395 (399)
+++.|.|+.++..+.|...|..+++....+++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 46788888887657899999999988777899999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q psy11867 396 KIYS 399 (399)
Q Consensus 396 ~ILV 399 (399)
+|||
T Consensus 82 ~vLv 85 (170)
T 2yjt_D 82 NVLV 85 (170)
Confidence 9986
No 91
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.01 E-value=6.5e-10 Score=97.85 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=73.3
Q ss_pred eeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcc
Q psy11867 318 IKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397 (399)
Q Consensus 318 i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~I 397 (399)
+.+.++.+.. ..|...+..++.....+++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|
T Consensus 6 ~~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCT-TSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCH-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 3455555544 679999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy11867 398 YS 399 (399)
Q Consensus 398 LV 399 (399)
||
T Consensus 85 lv 86 (212)
T 3eaq_A 85 LV 86 (212)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 92
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.00 E-value=6.6e-10 Score=102.85 Aligned_cols=82 Identities=21% Similarity=0.385 Sum_probs=75.7
Q ss_pred ceeEEEEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q psy11867 317 NIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFK 396 (399)
Q Consensus 317 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ 396 (399)
.+.++++.+.. ..|...+..++.....+++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 2 ~v~~~~i~~~~-~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCS-SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCH-HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 35677887766 67999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy11867 397 IYS 399 (399)
Q Consensus 397 ILV 399 (399)
|||
T Consensus 81 vLV 83 (300)
T 3i32_A 81 VLV 83 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 93
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.98 E-value=7.8e-10 Score=112.50 Aligned_cols=145 Identities=20% Similarity=0.269 Sum_probs=92.6
Q ss_pred hHHHHHHhhhhhcCCCCcEEEEccCCCCce--ehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 127 SKIQETALPTLLADPPHNMIAQSQSGTGKT--AAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 127 ~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT--~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
++.|..|++.++. ++.++++|++||||| ++++++.+..+... .+.++++++||..+|.++.+.+......+ ++.
T Consensus 151 ~~~Q~~Ai~~~l~--~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT--RRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQL-PLT 226 (608)
T ss_dssp CCHHHHHHHHHHT--BSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCC
T ss_pred CHHHHHHHHHHhc--CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCC
Confidence 7899999999997 699999999999999 77888888765332 45689999999999999998887765443 111
Q ss_pred EEEEEcCchhhhhhccCCc-EEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEE
Q psy11867 205 VRYAVRGENLERNKKITEQ-IIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIML 283 (399)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~-IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~ 283 (399)
.... . .... .....| ++-.+|+.. .+ .. .......++++|||||+++ + ...+..++..++..+|+++
T Consensus 227 ~~~~-~--~~~~-~~~Tih~ll~~~~~~~-~~-~~-~~~~~l~~d~lIIDEAsml-~----~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 227 DEQK-K--RIPE-DASTLHRLLGAQPGSQ-RL-RH-HAGNPLHLDVLVVDEASMI-D----LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp SCCC-C--SCSC-CCBTTTSCC--------------CTTSCCSCSEEEECSGGGC-B----HHHHHHHHHTCCTTCEEEE
T ss_pred HHHH-h--ccch-hhhhhHhhhccCCCch-HH-Hh-ccCCCCCCCEEEEechhhC-C----HHHHHHHHHhCCCCCEEEE
Confidence 0000 0 0000 001112 222233321 11 11 1112237899999999943 2 4566778888998999998
Q ss_pred EEee
Q psy11867 284 FSAT 287 (399)
Q Consensus 284 ~SAT 287 (399)
+.=.
T Consensus 295 vGD~ 298 (608)
T 1w36_D 295 LGDR 298 (608)
T ss_dssp EECT
T ss_pred Ecch
Confidence 8644
No 94
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.22 E-value=4.6e-06 Score=81.91 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=78.8
Q ss_pred HcCCCCChHHHHHHhhhhhcC---CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHH
Q psy11867 120 EMGFYAPSKIQETALPTLLAD---PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 120 ~~g~~~p~~iQ~~ai~~ll~~---~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 196 (399)
.+.|..+++-|.+|+..++.. +...+++.|+.|||||.+.. .++..+... ....+++++||...+..+.+.+.
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~-~~~~il~~a~T~~Aa~~l~~~~~-- 95 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALIST-GETGIILAAPTHAAKKILSKLSG-- 95 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHT-TCCCEEEEESSHHHHHHHHHHHS--
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhc-CCceEEEecCcHHHHHHHHhhhc--
Confidence 366889999999999977542 12499999999999996543 334333322 22469999999988876655441
Q ss_pred hccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCC
Q psy11867 197 GKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLP 276 (399)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~ 276 (399)
........-.............+ .......+...+++|+||++.+. ......+...++
T Consensus 96 ------~~~~T~h~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~iiiDE~~~~~-----~~~~~~l~~~~~ 153 (459)
T 3upu_A 96 ------KEASTIHSILKINPVTYEENVLF-----------EQKEVPDLAKCRVLICDEVSMYD-----RKLFKILLSTIP 153 (459)
T ss_dssp ------SCEEEHHHHHTEEEEECSSCEEE-----------EECSCCCCSSCSEEEESCGGGCC-----HHHHHHHHHHSC
T ss_pred ------cchhhHHHHhccCcccccccchh-----------cccccccccCCCEEEEECchhCC-----HHHHHHHHHhcc
Confidence 11111000000000000000000 00112245678999999999753 234555666666
Q ss_pred CCCcEEEEE
Q psy11867 277 SDCQIMLFS 285 (399)
Q Consensus 277 ~~~q~l~~S 285 (399)
...+++++.
T Consensus 154 ~~~~~~~vG 162 (459)
T 3upu_A 154 PWCTIIGIG 162 (459)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEC
Confidence 566666554
No 95
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.12 E-value=3.1e-06 Score=77.05 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHhccC--CCCcEEEEecchHhHHHHHHHHHHC-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCcc
Q psy11867 328 IDEKFEAVSNIYGVV--TIGQAMIFCHTRKTAAWLAEKMSKE-GLNVGLLSGELTVEQRLSILDRFREG-EFKI 397 (399)
Q Consensus 328 ~~~k~~~l~~ll~~~--~~~k~IIF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~~R~~v~~~F~~G-~~~I 397 (399)
...|...+.+++... ...++||||+++..++.++..|... |+.+..+||++++.+|..++++|++| ..+|
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v 167 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKF 167 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCE
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCE
Confidence 367888888888765 5689999999999999999999885 99999999999999999999999999 7774
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.12 E-value=7.8e-06 Score=82.29 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=79.0
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.+++.|..++..++. ++.+++.|+.|||||.... .++..+.. .+.++++++||...+..+.+... . .
T Consensus 189 ~L~~~Q~~Av~~~~~--~~~~~I~G~pGTGKTt~i~-~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~---~-----~ 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG--HRLVVLTGGPGTGKSTTTK-AVADLAES--LGLEVGLCAPTGKAARRLGEVTG---R-----T 255 (574)
T ss_dssp TCCHHHHHHHHHHTT--CSEEEEECCTTSCHHHHHH-HHHHHHHH--TTCCEEEEESSHHHHHHHHHHHT---S-----C
T ss_pred CCCHHHHHHHHHHHh--CCEEEEEcCCCCCHHHHHH-HHHHHHHh--cCCeEEEecCcHHHHHHhHhhhc---c-----c
Confidence 578999999999987 5899999999999996532 33333332 34569999999998877765431 0 0
Q ss_pred EEEEEcCchhhhhhccCCcEEEeCchhHHHhh---hccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcE
Q psy11867 205 VRYAVRGENLERNKKITEQIIIGTPGKVLDWG---LKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQI 281 (399)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~---~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~ 281 (399)
..|-.+++... ...........+++|||||+++. ...+..+++.++...++
T Consensus 256 ---------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~-----~~~~~~Ll~~~~~~~~l 309 (574)
T 3e1s_A 256 ---------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG-----DALMLSLLAAVPPGARV 309 (574)
T ss_dssp ---------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC-----HHHHHHHHTTSCTTCEE
T ss_pred ---------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC-----HHHHHHHHHhCcCCCEE
Confidence 00111111000 00111123467899999999863 34566777888777777
Q ss_pred EEEEe
Q psy11867 282 MLFSA 286 (399)
Q Consensus 282 l~~SA 286 (399)
+++.=
T Consensus 310 ilvGD 314 (574)
T 3e1s_A 310 LLVGD 314 (574)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77643
No 97
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.11 E-value=0.00019 Score=73.42 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=55.8
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC-CCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP-SIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
..+++-|.+|+... ...++|.|+.|||||.+.+--+...+.. .....++|++++|+..+.++.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~~----~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAAP----RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTCC----SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhCC----CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 46899999999732 5789999999999998776656655544 2234579999999999999999998874
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.99 E-value=1.3e-05 Score=82.03 Aligned_cols=69 Identities=26% Similarity=0.272 Sum_probs=54.2
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
.+++-|.+|+..++.. ..-.+|+||+|||||.+..-.+.+.+.. +.++|+++||..-+.++.+.+...+
T Consensus 189 ~LN~~Q~~AV~~al~~-~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ-KELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHC-SSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcC-CCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhcC
Confidence 5789999999998873 2357899999999998765555555543 4579999999999999988876653
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.99 E-value=2.7e-05 Score=79.41 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=55.1
Q ss_pred CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 123 FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
+..+++.|..|+..++. +...+++||+|||||....-.+...+.. .+.++|+++||..-+.++.+.+.+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~--~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ--RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp SCCCCHHHHHHHHHHHT--CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHhc--CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhcC
Confidence 45689999999999887 4788999999999997654333333321 34579999999999999988877643
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=3.2e-05 Score=80.78 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=54.8
Q ss_pred CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 123 FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
+..+++.|.+|+..++. +.-.+++||+|||||....-.+...+.. .+.++|+++||..-+.++.+.+.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~--~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ--RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTT--CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 45678999999999987 4678999999999997654333222221 34579999999999999999888753
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.90 E-value=6.4e-05 Score=78.46 Aligned_cols=71 Identities=24% Similarity=0.239 Sum_probs=54.6
Q ss_pred CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 123 FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 123 ~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
...+++.|.+|+..++. +.-.+++||+|||||.+..- ++..+... .+.++++++||..-+.++.+.+...+
T Consensus 354 ~~~Ln~~Q~~Av~~~l~--~~~~lI~GppGTGKT~ti~~-~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQ--RPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp SCCCCHHHHHHHHHHHT--SSEEEEECCTTSCHHHHHHH-HHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred ccCCCHHHHHHHHHhcc--CCeEEEEcCCCCCHHHHHHH-HHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 44678999999999887 47889999999999976543 33333221 45579999999999999988877643
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.42 E-value=0.00055 Score=65.03 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=57.7
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
.++|+|...+..+.. .+-+++..+-+.|||.+....++..+.. ..+..+++++|+++.|..+.+.++.+....+
T Consensus 163 ~L~p~Qk~il~~l~~--~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS--KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHH--SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhcc--CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 689999999987754 4778999999999998776655553332 2456799999999999988888888776544
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.26 E-value=0.0012 Score=66.80 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=58.1
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCC
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHIT 201 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 201 (399)
.++|+|...+..+.. .+.+++..+-|+|||.+....++..+... .+..+++++|+++.|..+.+.++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~--~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS--KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHH--CSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhcc--ccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 579999999987743 57899999999999987665444444332 355799999999999999988888876654
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.07 E-value=0.0022 Score=61.70 Aligned_cols=85 Identities=24% Similarity=0.216 Sum_probs=52.9
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCC
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITE 222 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (399)
+=.++.|+.|+|||.... ..+.. ...+|++||++++..+.+.+.+.+.. ...
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~~~--------------------~~~ 213 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVNF----EEDLILVPGRQAAEMIRRRANASGII--------------------VAT 213 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCCT----TTCEEEESCHHHHHHHHHHHTTTSCC--------------------CCC
T ss_pred cEEEEEcCCCCCHHHHHH----HHhcc----CCeEEEeCCHHHHHHHHHHhhhcCcc--------------------ccc
Confidence 456789999999996432 22221 24799999999998888766432110 011
Q ss_pred cEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 223 QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 223 ~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
+.-|.|.+.++-. ......-..+++|||||-.+
T Consensus 214 ~~~V~T~dsfL~~---~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 214 KDNVRTVDSFLMN---YGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp TTTEEEHHHHHHT---TTSSCCCCCSEEEEETGGGS
T ss_pred cceEEEeHHhhcC---CCCCCCCcCCEEEEeCcccC
Confidence 2346676665432 22222234789999999754
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.59 E-value=0.0023 Score=53.83 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|+.+++.||+|+|||....
T Consensus 38 g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCEEEECCSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 7899999999999996543
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.013 Score=54.02 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=20.3
Q ss_pred hhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
+.+..+.+.++++.||+|+|||++.-
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 44444468999999999999997654
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.42 E-value=0.0018 Score=54.98 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=26.4
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY 183 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 183 (399)
|+-.++.|+.|+|||...+--+..... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~---~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL---GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH---TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeecc
Confidence 567889999999999876543333322 234688888874
No 108
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.024 Score=48.57 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=24.4
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
..-.++||||+|.+.. .....+..++...+.+..+++.|
T Consensus 101 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTA--DAQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCH--HHHHHHHHHHHhcCCCCeEEEEe
Confidence 4567999999999853 23344455555555555555544
No 109
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.26 E-value=0.0039 Score=54.61 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
++.+++.||+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 689999999999999654
No 110
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.21 E-value=0.0091 Score=55.23 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.||+|+|||...-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5789999999999996543
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.13 E-value=0.0027 Score=55.56 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=51.3
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhcc
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKI 220 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (399)
+|.-+++.|++|+|||.+.+-.+..... .+.+++++.|...- . . ...+...+ |..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~--r-~--~~~i~srl----------G~~------- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDT--R-S--IRNIQSRT----------GTS------- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCG--G-G--CSSCCCCC----------CCS-------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCc--h-H--HHHHHHhc----------CCC-------
Confidence 3678889999999999876544443333 23458888776521 0 0 00111111 000
Q ss_pred CCcEEEeCchhHHHhhhccccccCCceeEEEEechhhH
Q psy11867 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVM 258 (399)
Q Consensus 221 ~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l 258 (399)
...+-+.+...+++.+... ..-...++|||||++.+
T Consensus 66 ~~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 LPSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp SCCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGS
T ss_pred ccccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccC
Confidence 0123456666676654321 22345789999999975
No 112
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.13 E-value=0.0046 Score=63.46 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=55.0
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC-CCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP-SIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
.+++-|.+++... +.+++|.|+.|||||.+..--+...+.. .....++|+|+.|+..|.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~~----~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV----TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC----SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC----CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999752 5889999999999998766555555543 22445799999999999999999887643
No 113
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.13 E-value=0.0091 Score=60.40 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=73.4
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcE
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLS 204 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~ 204 (399)
.+|.-|.+++..++.-.....++.|+-|.|||.+..+.+-.. .. .++|.+|+.+=+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~~-----~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-AG-----RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-SS-----CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-Hh-----CcEEECCCHHHHHHHHHHhhC---------
Confidence 689999999998886423457999999999996665544433 22 378999998866544332211
Q ss_pred EEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEE
Q psy11867 205 VRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLF 284 (399)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~ 284 (399)
.|-+..|+.+... ....+++|||||=.+. ...+..++. ....++|
T Consensus 240 ------------------~i~~~~Pd~~~~~--------~~~~dlliVDEAAaIp-----~pll~~ll~----~~~~v~~ 284 (671)
T 2zpa_A 240 ------------------KFRFIAPDALLAS--------DEQADWLVVDEAAAIP-----APLLHQLVS----RFPRTLL 284 (671)
T ss_dssp ------------------GCCBCCHHHHHHS--------CCCCSEEEEETGGGSC-----HHHHHHHHT----TSSEEEE
T ss_pred ------------------CeEEeCchhhhhC--------cccCCEEEEEchhcCC-----HHHHHHHHh----hCCeEEE
Confidence 0223356554321 2358899999997753 233444443 3346888
Q ss_pred EeeCC
Q psy11867 285 SATYD 289 (399)
Q Consensus 285 SAT~~ 289 (399)
|.|..
T Consensus 285 ~tTv~ 289 (671)
T 2zpa_A 285 TTTVQ 289 (671)
T ss_dssp EEEBS
T ss_pred EecCC
Confidence 88853
No 114
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.10 E-value=0.0072 Score=66.33 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=54.8
Q ss_pred CChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCC---CCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 125 APSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI---QEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 125 ~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~---~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
.+|+-|.++|..- +++++|.|..|||||.+.+--++..+.... ...++|+|++|+..|..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~~----~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST----GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC----SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC----CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 6799999998642 589999999999999887777777776533 445799999999999998877765
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.09 E-value=0.0085 Score=51.78 Aligned_cols=40 Identities=8% Similarity=0.073 Sum_probs=27.4
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
|+=.++.++.|+|||.+.+--+..... .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccC
Confidence 566678999999999876554444433 3446999998763
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.03 E-value=0.0088 Score=61.92 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=55.6
Q ss_pred CCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC-CCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 124 YAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP-SIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 124 ~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
..+++-|.+|+... +.+++|.|+.|||||.+..--+...+.. .....++|+|+.|+..|.++.+.+..+.
T Consensus 10 ~~Ln~~Q~~av~~~----~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT----EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC----SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC----CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 46899999999752 4789999999999998776666666643 2244579999999999999998888764
No 117
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.96 E-value=0.013 Score=49.87 Aligned_cols=39 Identities=8% Similarity=0.071 Sum_probs=27.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY 183 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 183 (399)
|+=.++.|++|||||.+.+--+..... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc
Confidence 677888999999999776544433332 345699998874
No 118
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.90 E-value=0.051 Score=48.70 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCCceehhH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~ 160 (399)
+..++++.||+|+|||..+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 35789999999999997653
No 119
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.83 E-value=0.012 Score=54.81 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=24.8
Q ss_pred ChHHHHHHhhhhhc----CC-CCcEEEEccCCCCceehhHH
Q psy11867 126 PSKIQETALPTLLA----DP-PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 126 p~~iQ~~ai~~ll~----~~-g~~vi~~a~TGsGKT~~~~l 161 (399)
.+|+|..++..+.. +. ++.+++.||.|+|||.....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 35777777665542 22 34599999999999976553
No 120
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.76 E-value=0.0052 Score=50.13 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|..+++.+|+|+|||...
T Consensus 36 g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CSEEEEESSSTTTTCHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 799999999999999643
No 121
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.61 E-value=0.047 Score=51.21 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=30.0
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhc---CCCCcEEEEccCCCCceehhH
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLA---DPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~---~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+|+++.-.+...+.|...-. .| .-.|.+.. .+++++++.||+|+|||+.+-
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~---~~---~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTH---HH---HHCGGGGCSSCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCceEEEECCCCCcHHHHHH
Confidence 457777655556666654210 00 11122221 135789999999999997653
No 122
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.57 E-value=0.043 Score=50.69 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=32.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcC---CCCcEEEEccCCCCceehhH
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLAD---PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~---~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+|+++.-.....+.|...-. .| ...|.+... +++++++.||+|+|||..+-
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 458888777777777765411 11 112222221 35789999999999997543
No 123
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.57 E-value=0.014 Score=47.20 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++++.|++|+|||..+-
T Consensus 24 ~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CSCEEEESSTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 7899999999999997653
No 124
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.42 E-value=0.012 Score=53.76 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6789999999999997653
No 125
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.39 E-value=0.017 Score=49.05 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=27.0
Q ss_pred hhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
|......|+=.++.|++|||||.-.+-.+-..... +.+++++.|.
T Consensus 13 ~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 13 PRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp ------CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred ccCCCCceEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 33333347888999999999995544433333332 3558888886
No 126
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.36 E-value=0.033 Score=48.64 Aligned_cols=39 Identities=8% Similarity=-0.032 Sum_probs=28.6
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY 183 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 183 (399)
|+=.++.|+.|+|||.+.+--+..... .+.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeecC
Confidence 677888999999999776655554443 345688888875
No 127
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.13 E-value=0.078 Score=43.89 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++++.||+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 6789999999999996543
No 128
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.11 E-value=0.31 Score=44.90 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=31.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhc---CCCCcEEEEccCCCCceehhH
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLA---DPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~---~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+|++++=.+...+.|...-. .|. -.|.+.. .+++.+++.||+|+|||..+-
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 468888766777777654210 011 1122222 235899999999999996543
No 129
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.96 E-value=0.029 Score=45.08 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+.++++.|++|+|||..+
T Consensus 27 ~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp SSCEEEEEETTCCHHHHH
T ss_pred CCcEEEECCCCccHHHHH
Confidence 689999999999999543
No 130
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.90 E-value=0.11 Score=47.40 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=31.1
Q ss_pred cccccCCCCHHHHHHHHHcC---CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 103 KTFEALHLKPELLKGVYEMG---FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g---~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+|+++.-.+...+.|...- ...|..+.... + .+++.+++.||+|+|||+.+-
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~----~-~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG----M-TPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC----C-CCCSEEEEECSSSSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC----C-CCCceEEEECCCCcCHHHHHH
Confidence 45777766666666665420 11111111110 1 237899999999999997553
No 131
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.90 E-value=0.053 Score=52.46 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.||+|+|||....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4789999999999997553
No 132
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.79 E-value=0.079 Score=44.97 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
.++++.||+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999997643
No 133
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.70 E-value=0.13 Score=46.28 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=31.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+|+++.-.+...+.|...-. .|. ...+.+..+-...++++++.||+|+|||...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE-LPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH-HHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH-HHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457888767777777765310 000 0011111111123689999999999999654
No 134
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.66 E-value=0.074 Score=51.17 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=67.1
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe--CcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA--PTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKK 219 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~--Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (399)
+.-+++.+++|+|||.....-+.... . .+.+++++. +.+.-+ .+.+..++... ++.+.....+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~-~--~G~kVllv~~D~~r~~a---~eqL~~~~~~~-gv~~~~~~~~~------- 162 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK-K--RGYKVGLVAADVYRPAA---YDQLLQLGNQI-GVQVYGEPNNQ------- 162 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH-H--TTCCEEEEEECCSCHHH---HHHHHHHHHTT-TCCEECCTTCS-------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEEecCccchhH---HHHHHHHHHhc-CCceeeccccC-------
Confidence 57788899999999976543222222 2 234465555 333322 22333333322 22211111110
Q ss_pred cCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHh--hcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHH
Q psy11867 220 ITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMI--ATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQ 297 (399)
Q Consensus 220 ~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~--~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~ 297 (399)
.|..+..... ......+.+++++|++-++. ........+..+...+.+..-++.++|+........++
T Consensus 163 --------dp~~i~~~al--~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 163 --------NPIEIAKKGV--DIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp --------CHHHHHHHHH--HHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH
T ss_pred --------CHHHHHHHHH--HHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH
Confidence 1222221111 11223467889999987653 22234445555555555666677888887665555554
Q ss_pred hh
Q psy11867 298 DM 299 (399)
Q Consensus 298 ~~ 299 (399)
.+
T Consensus 233 ~f 234 (433)
T 3kl4_A 233 RF 234 (433)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 135
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.63 E-value=0.032 Score=48.16 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=51.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|.=.++.++.|+|||...+--+ .+... .+.+++++.|...-- + --..+.... |. ..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~-~r~~~--~g~kvli~kp~~D~R---~-~~~~I~Sr~----------G~-------~~ 83 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL-RRGIY--AKQKVVVFKPAIDDR---Y-HKEKVVSHN----------GN-------AI 83 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHHHH--TTCCEEEEEEC---------------CBT----------TB-------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHH-HHHHH--cCCceEEEEeccCCc---c-hhhhHHHhc----------CC-------ce
Confidence 6778899999999997554443 33322 235589998865311 0 001111111 10 01
Q ss_pred CcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcCCchHHHHHHH
Q psy11867 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQ 272 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~~i~ 272 (399)
..+.|..+..+.+.+ ..+.++|+||||+.+.+ ...+++..+.
T Consensus 84 ~a~~v~~~~di~~~i-------~~~~dvV~IDEaQFf~~--~~v~~l~~la 125 (219)
T 3e2i_A 84 EAINISKASEIMTHD-------LTNVDVIGIDEVQFFDD--EIVSIVEKLS 125 (219)
T ss_dssp EEEEESSGGGGGGSC-------CTTCSEEEECCGGGSCT--HHHHHHHHHH
T ss_pred eeEEeCCHHHHHHHH-------hcCCCEEEEechhcCCH--HHHHHHHHHH
Confidence 124455554443321 24678999999999742 2444454554
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.62 E-value=0.082 Score=49.69 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++.+++.||+|+|||....
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 5789999999999997653
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.53 E-value=0.063 Score=49.40 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=23.9
Q ss_pred CceeEEEEechhhHh-hcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMI-ATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~-~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
...++++|||+|.+. . .....+..++...+.++++++.+
T Consensus 104 ~~~~vliiDEi~~l~~~--~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLA--ESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGH--HHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcH--HHHHHHHHHHHhCCCCcEEEEEe
Confidence 367899999999985 3 23334444444444456655533
No 138
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.39 E-value=0.042 Score=48.19 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=31.8
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 196 (399)
|.-+++.|++|+|||...+--+...... +..++++.-. +-..++.+.+..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcc-CCHHHHHHHHHHc
Confidence 7889999999999997654333333322 3347777643 3345555555544
No 139
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.32 E-value=0.098 Score=49.06 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCCceehhH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+.++++.||+|+|||...-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 37899999999999997543
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.12 E-value=0.32 Score=45.07 Aligned_cols=41 Identities=12% Similarity=0.304 Sum_probs=25.5
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEee
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSAT 287 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT 287 (399)
.+.+++|+||+|.|- . .....+..++...+.++.+++.|-.
T Consensus 133 ~~~~vlilDE~~~L~-~-~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANSLT-K-DAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTSSC-H-HHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCeEEEEeCccccC-H-HHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 467899999999953 2 3344455666665656555555543
No 141
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.00 E-value=0.098 Score=47.85 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=24.2
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
..-.++|+||+|.+.. .....+..++...+..+.+++.+
T Consensus 109 ~~~~vliiDe~~~l~~--~~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCH--HHHHHHHHHHHhcCCCCeEEEEe
Confidence 4567999999999843 23334445555555555555543
No 142
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.93 E-value=0.049 Score=50.03 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5899999999999996554
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.71 E-value=0.27 Score=45.84 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCCceehhH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+..+++.||+|+|||...-
T Consensus 44 ~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 36899999999999997543
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.62 E-value=0.15 Score=44.06 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=28.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
|.-+++.||+|+|||.....-+..... .+..++++.... ...++...+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~-~~~~~~~~~~~~~ 74 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE-SRDSIIRQAKQFN 74 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS-CHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc-CHHHHHHHHHHhc
Confidence 788999999999999654332222221 123466665322 2344444444443
No 145
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.45 E-value=0.16 Score=46.55 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=25.4
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChh
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKE 291 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~ 291 (399)
...+++||||||+|... ..+.+...+..-++.+.++++ ++.+..
T Consensus 81 ~~~kvviIdead~lt~~--a~naLLk~LEep~~~t~fIl~-t~~~~k 124 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ--AANAFLKALEEPPEYAVIVLN-TRRWHY 124 (305)
T ss_dssp SSSEEEEETTGGGBCHH--HHHHTHHHHHSCCTTEEEEEE-ESCGGG
T ss_pred CCceEEEeccHHHhCHH--HHHHHHHHHhCCCCCeEEEEE-ECChHh
Confidence 45789999999998532 233334444544444555544 454433
No 146
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.41 E-value=0.13 Score=47.64 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=24.6
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
...+++++||+|.+... ....+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~--~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD--AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH--HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH--HHHHHHHHHHhcCCCceEEEEe
Confidence 35579999999998532 3344455555555556566544
No 147
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.34 E-value=0.47 Score=41.71 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
++.+++.||+|+|||...
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 688999999999999654
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.27 E-value=0.42 Score=44.72 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=21.8
Q ss_pred cEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe
Q psy11867 144 NMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA 180 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 180 (399)
.+++.||+|+|||...- .+...+.... +..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~~~-~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKDKT-TARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTTSC-CCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhhhc-CeeEEEEe
Confidence 89999999999997653 3334443321 23455554
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.09 E-value=0.5 Score=40.49 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCceehh
Q psy11867 143 HNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~ 159 (399)
+.+++.||+|+|||...
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999654
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.95 E-value=0.091 Score=47.98 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=23.4
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
.-.++||||+|.+... ....+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~--~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG--AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH--HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH--HHHHHHHHHhccCCCceEEEEe
Confidence 4679999999998532 2233344555555556666654
No 151
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.89 E-value=0.24 Score=47.69 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe--CcHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA--PTYELA 186 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~--Pt~~La 186 (399)
+.-+++++++|+|||....--+.. +.. .+.+++++. |.+.-+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~-l~~--~G~kVllv~~D~~R~aa 143 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY-FQK--RGYKVGVVCSDTWRPGA 143 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH-HHT--TTCCEEEEECCCSSTHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH-HHH--CCCeEEEEeCCCcchhH
Confidence 567889999999999765433322 222 234566655 444433
No 152
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.83 E-value=0.11 Score=47.37 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=26.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+|+++--.+...+.+... + ..+...++++.||+|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l--------------~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-V--------------ERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-T--------------TTTCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-H--------------hCCCCCeEEEECcCCcCHHHHH
Confidence 4566665566666666542 1 1121346999999999999654
No 153
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=92.15 E-value=0.28 Score=49.59 Aligned_cols=113 Identities=11% Similarity=0.086 Sum_probs=65.8
Q ss_pred CCCcEEEEEeeCChhHHHHHHhhCCCCeEEecccccccccceeEEEEEeCC--------hhh----HHHHHHHHhccCCC
Q psy11867 277 SDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYVMCKN--------IDE----KFEAVSNIYGVVTI 344 (399)
Q Consensus 277 ~~~q~l~~SAT~~~~v~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~~~~~~--------~~~----k~~~l~~ll~~~~~ 344 (399)
....+|++|||+.+ ...+....-.+...+.+..... ..+. ....+.. ... -...+..++.. .+
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~spf~-~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~ 448 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDITGFEIPFKKIGEIFP-PENR--YIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VK 448 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHHCCCCCEEECCCCSC-GGGE--EEEEECCC-------CHHHHHHHHHHHHHHHHH-HC
T ss_pred hCCeEEEEccCCCc-HHHHHHHhCCCceeeecCCCCC-HHHe--EEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CC
Confidence 55678999999986 3444444332233333332211 1122 1111111 011 12223344433 34
Q ss_pred CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 345 GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 345 ~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
+.++||++|.+..+.+++.|...+.+ ...+++..+|..++++|+ |+-.||
T Consensus 449 g~~lvlF~Sy~~l~~v~~~l~~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL 498 (620)
T 4a15_A 449 KNTIVYFPSYSLMDRVENRVSFEHMK---EYRGIDQKELYSMLKKFR-RDHGTI 498 (620)
T ss_dssp SCEEEEESCHHHHHHHTSSCCSCCEE---CCTTCCSHHHHHHHHHHT-TSCCEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcchh---ccCCCChhHHHHHHHHhc-cCCcEE
Confidence 78999999999999999888632222 555677789999999999 766655
No 154
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.13 E-value=0.41 Score=40.54 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=73.3
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH-HHHHHHHHHHHHhccCCCcEEEEEEcCchh--hhhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE-LAIQIGEVVAKMGKHITDLSVRYAVRGENL--ERNK 218 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~-La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 218 (399)
...+++..++|.|||.+++--++..+.. +.+++|+.-.+. .-..-.+.++++ .+. +...|..+ ....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQF~Kg~~~~gE~~~l~~L-----~v~--~~~~g~gf~~~~~~ 97 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPNGERNLLEPH-----GVE--FQVMATGFTWETQN 97 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCCHHHHHHGGG-----TCE--EEECCTTCCCCGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCccHHHHHHhC-----CcE--EEEcccccccCCCC
Confidence 4689999999999999988777777754 345877743221 000001222222 122 22222111 0000
Q ss_pred ccCCcEEEeCchhHHHhhhccccccCCceeEEEEechhhHhhcC-CchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHH
Q psy11867 219 KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ-GHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQ 297 (399)
Q Consensus 219 ~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lViDEah~l~~~~-~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~ 297 (399)
... +.. .....+.... +.+.-..+++||+||+-..+..+ --.+.+..++...+....+|+.+--.|+.+.+.+.
T Consensus 98 ~~~-~~~--~a~~~l~~a~--~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 98 REA-DTA--ACMAVWQHGK--RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp HHH-HHH--HHHHHHHHHH--HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred cHH-HHH--HHHHHHHHHH--HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 000 000 0011122211 22233678999999997754431 13344556667667677777777767777766653
No 155
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.04 E-value=0.45 Score=46.55 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCCceehhH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~ 160 (399)
++.++++.||+|+|||+.+-
T Consensus 237 ~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHH
Confidence 36889999999999997653
No 156
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.58 E-value=0.31 Score=45.09 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=25.4
Q ss_pred CceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEE
Q psy11867 245 SKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFS 285 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~S 285 (399)
...+++|+||+|.|.. .....+..++...+..+.+++.+
T Consensus 109 ~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN--AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 3478999999999853 23344555666666666666543
No 157
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.52 E-value=0.33 Score=46.16 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=51.7
Q ss_pred CCCcEEEEecchHhHHHHHHHHHH---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSK---EGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+++||.++++.-+.++++.+.. .|+++..+||+.+..+|....+.+..|+.+|+|
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv 122 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILV 122 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEE
Confidence 457899999999999999999988 588999999999999999999999999888875
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.46 E-value=0.13 Score=47.43 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
..++++.||+|+|||..+.
T Consensus 55 ~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4789999999999996543
No 159
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.79 E-value=0.22 Score=56.56 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhcc
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKI 220 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (399)
+|+++++.+|+|+|||..+...+..... .+.+++++..-..+... + ++.++..+..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l-~--a~~~G~dl~~l----------------- 1482 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-Y--ARKLGVDIDNL----------------- 1482 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHH-H--HHHTTCCTTTC-----------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHH-H--HHHcCCCchhc-----------------
Confidence 3799999999999999877655554443 34568888765443322 2 55555444332
Q ss_pred CCcEEEeCch---hHHHhhhccccccCCceeEEEEechhhHh
Q psy11867 221 TEQIIIGTPG---KVLDWGLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 221 ~~~IlV~Tp~---~l~~~~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
.|..|. +++..+.. ...-..+++|||||.+-+.
T Consensus 1483 ----~v~~~~~~E~~l~~~~~--lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1483 ----LCSQPDTGEQALEICDA--LARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp ----EEECCSSHHHHHHHHHH--HHHHTCCSEEEESCGGGCC
T ss_pred ----eeecCChHHHHHHHHHH--HHhcCCCCEEEEcChhHhc
Confidence 222232 23222111 1112468899999998553
No 160
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.67 E-value=0.2 Score=48.47 Aligned_cols=19 Identities=42% Similarity=0.492 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
..++++.||+|+|||..+-
T Consensus 50 ~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHH
Confidence 3579999999999997553
No 161
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.46 E-value=0.37 Score=49.91 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=19.2
Q ss_pred hhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 134 LPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 134 i~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
+..+....+.++++.||+|+|||...
T Consensus 199 ~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 199 IQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp HHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred HHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 33333334789999999999999654
No 162
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.44 E-value=1.4 Score=36.13 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=50.1
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccC
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDL 244 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~ 244 (399)
...++||.++++..+..+++.+... ++.+....|+...... ..+..+|+|+|.- -...+++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-------~~~Gid~ 100 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-------CARGIDV 100 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-------CCTTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-------hhcCCCc
Confidence 4568999999999999998888764 4556666666443221 1456789999942 2356788
Q ss_pred CceeEEEEec
Q psy11867 245 SKIKVFVLDE 254 (399)
Q Consensus 245 ~~~~~lViDE 254 (399)
..++++|.-+
T Consensus 101 ~~~~~Vi~~d 110 (175)
T 2rb4_A 101 KQVTIVVNFD 110 (175)
T ss_dssp TTEEEEEESS
T ss_pred ccCCEEEEeC
Confidence 8899988533
No 163
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.28 E-value=0.094 Score=43.78 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=45.8
Q ss_pred ChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHH
Q psy11867 126 PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQ 188 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q 188 (399)
..+-|..++..++....+-.++.+.-|++|+...+-.++..... .+.++.+|+|+..-...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGREVQIIAADRRSQMN 95 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTCCEEEECSTTHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCeEEEEEcCchHHHHH
Confidence 44679999999987656788889999999998865555544433 56679999999765543
No 164
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.27 E-value=0.61 Score=40.42 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCC---CCCCeEEEEeC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPS---IQEPQVLCLAP 181 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~---~~~~~~lil~P 181 (399)
|.-+.+.+|+|+|||.....-+...+... .....++++.-
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 78899999999999976554433322211 01345677764
No 165
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.99 E-value=0.32 Score=42.40 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKM 196 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~ 196 (399)
+|.-+++.|++|+|||...+--+.+.... .+..++|++-. +-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~--~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCceeeccc-CCHHHHHHHHHHc
Confidence 37889999999999996544333332222 12236776633 3345555555443
No 166
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.00 E-value=0.3 Score=42.64 Aligned_cols=47 Identities=9% Similarity=0.112 Sum_probs=26.7
Q ss_pred CceeEEEEechhhHhhc----CCchHHHHHHHHhCCCCCcEEEEEeeCChh
Q psy11867 245 SKIKVFVLDEADVMIAT----QGHQDFSIRIQKRLPSDCQIMLFSATYDKE 291 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~----~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~ 291 (399)
.+.+++|+||.-.+++. ......+..+++.+...-.+++++.-....
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 46789999999988751 123333555555543333456665554433
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.97 E-value=0.49 Score=44.71 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=15.8
Q ss_pred CCcEEE--EccCCCCceehhH
Q psy11867 142 PHNMIA--QSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~--~a~TGsGKT~~~~ 160 (399)
+..+++ .|+.|+|||....
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHH
Confidence 578888 9999999997543
No 168
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=88.77 E-value=0.55 Score=48.70 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=50.3
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..+++|.++++.-|.+.++.+.+. |+++..+||+++..+|..+++.+.+|..+|+|
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvV 476 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVI 476 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 468999999999999888887654 78999999999999999999999999999875
No 169
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.63 E-value=1.2 Score=36.16 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCC
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLS 245 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~ 245 (399)
+.++||.++++.-+..+++.++.. ++.+....|+...... ..+..+|+|+|. + -...+++.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~--~-----~~~Gld~~ 102 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD--V-----AARGIDIE 102 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG--G-----GTTTCCCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC--h-----hhcCCchh
Confidence 457999999999999999988875 4556666666433221 145668999993 1 12467788
Q ss_pred ceeEEEEec
Q psy11867 246 KIKVFVLDE 254 (399)
Q Consensus 246 ~~~~lViDE 254 (399)
.++++|.-+
T Consensus 103 ~~~~Vi~~~ 111 (163)
T 2hjv_A 103 NISLVINYD 111 (163)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEeC
Confidence 888888643
No 170
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.38 E-value=0.73 Score=42.83 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
+.+++.||.|+|||....
T Consensus 39 ~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999997653
No 171
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.15 E-value=0.51 Score=46.02 Aligned_cols=51 Identities=12% Similarity=0.226 Sum_probs=38.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGK 198 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 198 (399)
+....+.+-||||||++..- +.... +..+|||+|+...|.|+++.++.+..
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~-l~~~~-----~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAE-IAERH-----AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHH-HHHHS-----SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCeEEEeCCCchHHHHHHHH-HHHHh-----CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 67889999999999965332 22221 12389999999999999999998753
No 172
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.60 E-value=0.24 Score=47.59 Aligned_cols=53 Identities=17% Similarity=0.269 Sum_probs=37.0
Q ss_pred ccccccCCCCHHHHHHHHHc---CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 102 VKTFEALHLKPELLKGVYEM---GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~---g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
-.+|++.+-.+...+.|... -+.+|--++...++ +++.+++.||+|+|||+.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~-----~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR-----APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC-----CCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC-----CCCeeEEECcCCCCHHHHH
Confidence 45799998778888777653 23344444443332 3689999999999999654
No 173
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.59 E-value=0.37 Score=50.68 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=19.3
Q ss_pred hhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 134 LPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 134 i~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+......++++.||+|+|||...-
T Consensus 183 ~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 183 IQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp HHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred HHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 333334346789999999999996543
No 174
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.52 E-value=1.9 Score=34.98 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=49.0
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccC
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDL 244 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~ 244 (399)
...++||.++++.-+..+++.++.. ++.+....++...... ..+...|+|+|.- -...+++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-------~~~G~d~ 96 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-------LARGIDV 96 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-------GTTTCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-------hhcCCCc
Confidence 3457999999999999999888875 4455666666443221 1456689999942 1246678
Q ss_pred CceeEEEEec
Q psy11867 245 SKIKVFVLDE 254 (399)
Q Consensus 245 ~~~~~lViDE 254 (399)
..++++|.-+
T Consensus 97 ~~~~~Vi~~~ 106 (165)
T 1fuk_A 97 QQVSLVINYD 106 (165)
T ss_dssp CSCSEEEESS
T ss_pred ccCCEEEEeC
Confidence 8888887643
No 175
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.10 E-value=1 Score=44.48 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=52.2
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
.+++||.++++.-+...++.|...|..+..+||+.+..++..++..++.|..+||+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv 120 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY 120 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 47899999999999999999999999999999999999999999999999988874
No 176
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.06 E-value=0.81 Score=49.45 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=51.9
Q ss_pred CCCcEEEEecchHhHHHHHHHHHH---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSK---EGLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...++||.++++.-|.++++.|.. .++.+..+||+++..+|...++.++.|..+|+|
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV 179 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILV 179 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 456899999999999999999988 467999999999999999999999999988875
No 177
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.89 E-value=0.5 Score=43.28 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=53.6
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
| -+.+.+|+|+|||...+-.+...... ..+.+++++..-..+... .+++++-...
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~~---ra~~lGvd~d-------------------- 83 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITPA---YLRSMGVDPE-------------------- 83 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCHH---HHHHTTCCGG--------------------
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhHH---HHHHhCCCHH--------------------
Confidence 5 68999999999997665544443322 124578998876555332 3555543221
Q ss_pred CcEEEeCchhHHHh----hhccccccCCceeEEEEechhhHh
Q psy11867 222 EQIIIGTPGKVLDW----GLKYRFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~----~~~~~~~~~~~~~~lViDEah~l~ 259 (399)
++++..|..+-+. +.....+.-..++++|||-+..|.
T Consensus 84 -~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 -RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 2455544443222 111111233468999999999875
No 178
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.60 E-value=1.7 Score=37.14 Aligned_cols=68 Identities=9% Similarity=0.119 Sum_probs=48.6
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCC
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLS 245 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~ 245 (399)
+.++||.++++.-+..+++.+... ++.+....|+...... ..+..+|+|+|.- -...+++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-------~~~Gidi~ 98 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-------AARGLDIP 98 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-------TTCSSSCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-------hhcCCCCc
Confidence 457999999999999999988876 4556666776443221 2456789999942 22567888
Q ss_pred ceeEEEE
Q psy11867 246 KIKVFVL 252 (399)
Q Consensus 246 ~~~~lVi 252 (399)
++++||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8888884
No 179
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=86.59 E-value=5.1 Score=33.41 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCC
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLS 245 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~ 245 (399)
+.++||.++++.-+..+++.++.. ++.+....|+...... ..+...|+|+|. +.. ..+++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~--~~~-----~Gldi~ 121 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD--VAS-----KGLDFP 121 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH--HHH-----TTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC--chh-----cCCCcc
Confidence 357999999999999999988876 4455666666433221 145678999993 222 466788
Q ss_pred ceeEEEE
Q psy11867 246 KIKVFVL 252 (399)
Q Consensus 246 ~~~~lVi 252 (399)
+++++|.
T Consensus 122 ~v~~VI~ 128 (191)
T 2p6n_A 122 AIQHVIN 128 (191)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 8888876
No 180
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.33 E-value=2 Score=35.22 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=49.5
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccC
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDL 244 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~ 244 (399)
...++||.|+++.-+..+++.+... ++.+....|+...... ..+...|+|+|.- -...+++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-------~~~Gldi 97 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-------FGRGMDI 97 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-------CSTTCCG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-------hhcCcch
Confidence 3457999999999999999988875 4555666666433221 1456789999952 2246678
Q ss_pred CceeEEEEec
Q psy11867 245 SKIKVFVLDE 254 (399)
Q Consensus 245 ~~~~~lViDE 254 (399)
..++++|.-+
T Consensus 98 ~~~~~Vi~~d 107 (172)
T 1t5i_A 98 ERVNIAFNYD 107 (172)
T ss_dssp GGCSEEEESS
T ss_pred hhCCEEEEEC
Confidence 8888888644
No 181
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=85.99 E-value=1 Score=33.88 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=32.9
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTV 380 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 380 (399)
..++++||.+-..+...+..|...|+++..+.||+..
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 3689999999888999999999999999999999654
No 182
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.79 E-value=2.4 Score=42.57 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|..+++.+|+|+|||..+-
T Consensus 60 g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp TCCEEEECCTTSSHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHH
Confidence 7999999999999997653
No 183
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.63 E-value=0.82 Score=43.70 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=24.3
Q ss_pred HHHHhhhhhcCCCCcEEEEccCCCCceehhHHHHHHhhCC
Q psy11867 130 QETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNP 169 (399)
Q Consensus 130 Q~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~l~il~~l~~ 169 (399)
+..++..++..+|.-+++.||||||||... -.++..+..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~~ 193 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNS 193 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCC
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcCC
Confidence 344444444444678899999999999643 234444443
No 184
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.76 E-value=0.44 Score=39.22 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+.++++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 588999999999999654
No 185
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=84.55 E-value=1.8 Score=43.43 Aligned_cols=56 Identities=13% Similarity=0.187 Sum_probs=50.7
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHH--hcCCCcccC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRF--REGEFKIYS 399 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F--~~G~~~ILV 399 (399)
.+++||.++++.-+...++.|...|+.+..++|+++..++..++..+ ..|..+|||
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv 141 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIY 141 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEE
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEE
Confidence 47899999999999999999999999999999999999999999988 567887764
No 186
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.51 E-value=1.7 Score=44.87 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.6
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999996553
No 187
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.40 E-value=0.49 Score=45.40 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=30.6
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAI 187 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~ 187 (399)
..|+++.|+||||||... ..++..+.. .+..++|+=|..++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~--~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL--RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH--TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH--CCCcEEEEeCCCchhH
Confidence 589999999999999874 333433322 3456888889888764
No 188
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.20 E-value=1.6 Score=40.14 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=32.1
Q ss_pred ceeEEEEechhhHhhcCCchHHHHHHHHhCCCCCcEEEEEeeCChhHHHHHHhh
Q psy11867 246 KIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDM 299 (399)
Q Consensus 246 ~~~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~l~~SAT~~~~v~~~~~~~ 299 (399)
..+++++|.+-++.........+..+.+.+.+...++.+.++....+.+.++.+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 345677887766432223334444455555566677788888777666666554
No 189
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.08 E-value=0.94 Score=42.46 Aligned_cols=38 Identities=8% Similarity=-0.047 Sum_probs=25.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
|.-+++.+++|+|||...+-.+...... +..++|+..-
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 7889999999999996554433333322 3357777754
No 190
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.99 E-value=1.2 Score=50.71 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=36.7
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccC
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHI 200 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 200 (399)
+|+++++.+++|+|||......+.+.... +.+++++. ..++..+++ .+.++-.+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit-~ee~~~~L~--a~~~G~dl 1133 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFID-AEHALDPIY--ARKLGVDI 1133 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEC-TTSCCCHHH--HHHTTCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE-ccccHHHHH--HHHcCCCh
Confidence 38999999999999998777666666554 34577776 344455555 35555444
No 191
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.92 E-value=8.3 Score=34.98 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCceehh
Q psy11867 143 HNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~ 159 (399)
..+++.|+.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58999999999999654
No 192
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=83.74 E-value=2.6 Score=35.05 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=48.3
Q ss_pred CCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhh-------hhccCCcEE
Q psy11867 153 TGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLER-------NKKITEQII 225 (399)
Q Consensus 153 sGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Il 225 (399)
+.|- .+++-++... ..+.++||.++++.-+..+.+.++.. ++.+....|+..... -..+...|+
T Consensus 30 ~~K~-~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 30 SDKR-SFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGHH-HHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred HHHH-HHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 4453 3344444442 24567999999999999999888875 345555555543211 124567899
Q ss_pred EeCchhHHHhhhccccccCCceeEEEE
Q psy11867 226 IGTPGKVLDWGLKYRFFDLSKIKVFVL 252 (399)
Q Consensus 226 V~Tp~~l~~~~~~~~~~~~~~~~~lVi 252 (399)
|+|. +.. ..+++..++++|.
T Consensus 101 vaT~--~~~-----~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 101 VATA--VAA-----RGLDISNVKHVIN 120 (185)
T ss_dssp EEEC-------------CCCSBSEEEE
T ss_pred EEcC--hhh-----cCCCcccCCEEEE
Confidence 9994 222 3567778888876
No 193
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=83.71 E-value=0.88 Score=33.62 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=31.8
Q ss_pred CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCC
Q psy11867 345 GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELT 379 (399)
Q Consensus 345 ~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 379 (399)
.++++||.+-..+...+..|...|+++..+.||+.
T Consensus 57 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 57 ETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp SEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 58999999998999999999999999999999854
No 194
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=83.55 E-value=0.88 Score=42.46 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYEL 185 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 185 (399)
|.-+++.+|+|+|||...+. ++..+.. .+..++++..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~-la~~~~~--~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALH-AIAEAQK--MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHH-HHHHHHH--TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHh--cCCeEEEEeccccc
Confidence 78899999999999965443 3332222 23457888754433
No 195
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=82.93 E-value=1 Score=32.81 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=31.5
Q ss_pred CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCC
Q psy11867 345 GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELT 379 (399)
Q Consensus 345 ~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 379 (399)
.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 68999999988899999999999999888999875
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.90 E-value=0.46 Score=45.05 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=33.6
Q ss_pred cccccCCCCHHHHHHHHHc---CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEM---GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~---g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
-+|++.+=.+...+.|.+. -+.+|--++...+ .+++.+++.||+|+|||+.+
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-----~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-----AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-----CCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-----CCCCceEEeCCCCCCHHHHH
Confidence 4688887556666666653 1233333333322 23689999999999999654
No 197
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=82.71 E-value=5.8 Score=29.46 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=43.0
Q ss_pred EEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q psy11867 347 AMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFK 396 (399)
Q Consensus 347 ~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ 396 (399)
.+||...-+....+.+.+...|..+..+.++.....|..-++.|...-+.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 36777888888889999999999999999999999999999999765443
No 198
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=82.64 E-value=0.87 Score=33.81 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=31.5
Q ss_pred CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCC
Q psy11867 345 GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELT 379 (399)
Q Consensus 345 ~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 379 (399)
.++++||.+-..+...+..|...|+++..+.||+.
T Consensus 57 ~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 57999999988899999999999999999999853
No 199
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=82.53 E-value=4.6 Score=39.84 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=54.2
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhcccccc
Q psy11867 171 IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFD 243 (399)
Q Consensus 171 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~ 243 (399)
..+.++||.|+|+.-+..+++.++..... ++.+....++...... ..+..+|+|||.- -...++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-------~~~GiD 407 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-------GARGMD 407 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-------GTSSCC
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-------hhcCCC
Confidence 35668999999999999999999887542 4566666776543221 1456789999962 225678
Q ss_pred CCceeEEEEech
Q psy11867 244 LSKIKVFVLDEA 255 (399)
Q Consensus 244 ~~~~~~lViDEa 255 (399)
+.++++||.-..
T Consensus 408 ip~v~~VI~~~~ 419 (563)
T 3i5x_A 408 FPNVHEVLQIGV 419 (563)
T ss_dssp CTTCCEEEEESC
T ss_pred cccCCEEEEECC
Confidence 888999886553
No 200
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.66 E-value=0.64 Score=45.71 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=25.9
Q ss_pred HHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceeh
Q psy11867 116 KGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 116 ~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~ 158 (399)
..|.+.|.. ++.+..-+...... |.++++.||||||||..
T Consensus 237 ~~l~~~G~~--~~~~l~~l~~~v~~-g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGTV--PSGVLAYLWLAIEH-KFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTSS--CHHHHHHHHHHHHT-TCCEEEEESTTSSHHHH
T ss_pred hhHHhcCCC--CHHHHHHHHHHHhC-CCEEEEECCCCCCHHHH
Confidence 445556632 33344444444444 78999999999999964
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.38 E-value=0.47 Score=45.58 Aligned_cols=52 Identities=25% Similarity=0.412 Sum_probs=31.8
Q ss_pred cccccCCCCHHHHHHHHHc---CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEM---GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~---g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
-+|++.+=.+...+.|... -+.+|--++...+ .+++.+++.||+|+|||+.+
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-----~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-----KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-----CCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-----CCCCeEEEECCCCCcHHHHH
Confidence 3577776555666666542 1223333333222 23799999999999999654
No 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.17 E-value=1.2 Score=40.05 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=30.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHH-HHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQ-ETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ-~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+|+++.=.+...+.+...-. .+.. .+.+..+ ..+++.+++.||+|+|||..+
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGL-RAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGG-GCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcC-CCCCCeEEEECcCCCCHHHHH
Confidence 457777666677776654310 0000 0011111 123689999999999999654
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=80.70 E-value=1.1 Score=43.26 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=31.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhh---cCCCCcEEEEccCCCCceehhH
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLL---ADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll---~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+|+++.=.....+.|...-. .|.. .|.+. ..+++.+++.||+|+|||+.+-
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHT---HHHH---CTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhh---CHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 467887666677777664310 0111 11111 1236899999999999997553
No 204
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=80.25 E-value=4.5 Score=34.22 Aligned_cols=51 Identities=20% Similarity=0.405 Sum_probs=39.1
Q ss_pred CcEEEEecchHhHHHHHHHHHHC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 345 GQAMIFCHTRKTAAWLAEKMSKE-----GLNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 345 ~k~IIF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
.++||.|+++.-+.++++.+.+. +..+..++|+.+..++...+ ..+..+|+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~~~~~i~ 138 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKNCPHIV 138 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HHSCCSEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hcCCCCEE
Confidence 48999999999999998887764 68899999999877665433 34444554
No 205
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.70 E-value=0.57 Score=45.19 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=34.3
Q ss_pred cccccCCCCHHHHHHHHHcC---CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEMG---FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g---~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
-+|++.+=.+...+.|.+.= +.+|--++..-+ .+++.+++.||+|+|||+.+
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-----~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-----DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-----CCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-----CCCCceEeeCCCCCcHHHHH
Confidence 56888877777777776531 223333332222 24799999999999999654
No 206
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=79.56 E-value=6.6 Score=38.93 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=54.2
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhcccccc
Q psy11867 171 IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFD 243 (399)
Q Consensus 171 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~ 243 (399)
..+.++||.|+|+.-+..+++.++..... ++.+....++...... ..+..+|+|||-- -...++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-------~~~GiD 356 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-------GARGMD 356 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-------GTSSCC
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-------hhcCCC
Confidence 34568999999999999999999887542 4566666676443221 1456789999952 225778
Q ss_pred CCceeEEEEech
Q psy11867 244 LSKIKVFVLDEA 255 (399)
Q Consensus 244 ~~~~~~lViDEa 255 (399)
+.++++||.-..
T Consensus 357 ip~v~~VI~~~~ 368 (579)
T 3sqw_A 357 FPNVHEVLQIGV 368 (579)
T ss_dssp CTTCCEEEEESC
T ss_pred cccCCEEEEcCC
Confidence 889999887654
No 207
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.49 E-value=0.83 Score=43.63 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=32.9
Q ss_pred cccccCCCCHHHHHHHHHc---CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEM---GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~---g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+|++.+=-+...+.|.+. -+.+|--++..-++ +++.+++.||+|+|||+.+
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~-----~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK-----PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC-----CCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC-----CCCCCceECCCCchHHHHH
Confidence 4677776445555555542 23344444433332 3689999999999999654
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.22 E-value=0.66 Score=44.45 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=32.0
Q ss_pred cccccCCCCHHHHHHHHHc---CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEM---GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~---g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
-+|++.+=.+...+.|... -+.+|--++..-+ .+++.+++.||+|+|||+.+
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-----~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-----DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-----CCCCEEEEESCTTTTHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-----CCCceEEEECCCCCCHHHHH
Confidence 4677776556666666542 1223333333222 23689999999999999654
No 209
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=78.78 E-value=0.5 Score=39.74 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.9
Q ss_pred CcEEEEccCCCCceeh
Q psy11867 143 HNMIAQSQSGTGKTAA 158 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~ 158 (399)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999954
No 210
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=78.65 E-value=1.5 Score=32.82 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=30.9
Q ss_pred CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCC
Q psy11867 345 GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELT 379 (399)
Q Consensus 345 ~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 379 (399)
.++++||.+-..+...+..|.+.|+++..+.||+.
T Consensus 57 ~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 57999999988889999999999999988988853
No 211
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.40 E-value=33 Score=31.32 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=52.8
Q ss_pred CCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhcccccc
Q psy11867 171 IQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFD 243 (399)
Q Consensus 171 ~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~ 243 (399)
....++||.++++.-+..+++.++.. +..+....++...... ..+..+|+|+|.- -...++
T Consensus 241 ~~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-------~~~Gid 308 (395)
T 3pey_A 241 MTIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-------LARGID 308 (395)
T ss_dssp TTSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-------GSSSCC
T ss_pred ccCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-------hhcCCC
Confidence 35578999999999999999988876 3445566666433221 1456689999952 235778
Q ss_pred CCceeEEEEechhh
Q psy11867 244 LSKIKVFVLDEADV 257 (399)
Q Consensus 244 ~~~~~~lViDEah~ 257 (399)
+.++++||.-+...
T Consensus 309 ip~~~~Vi~~~~p~ 322 (395)
T 3pey_A 309 IPTVSMVVNYDLPT 322 (395)
T ss_dssp CTTEEEEEESSCCB
T ss_pred cccCCEEEEcCCCC
Confidence 88999999766543
No 212
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=78.25 E-value=1.8 Score=32.33 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=32.0
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCC-eEEEEcCCCCH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGL-NVGLLSGELTV 380 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~~ 380 (399)
..++++||.+-..+...+..|...|+ +|..+.||+..
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 35799999998889999999999999 49999999654
No 213
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.97 E-value=0.53 Score=42.18 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=27.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+|++++-.+.+.+.|...-. .|.. ...++..+--..++.+++.||+|+|||+..
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~-~~~~-~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAIL-APVR-NPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHT-HHHH-SHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH-HHhh-CHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 468888766777777664211 1111 111222211112455999999999999654
No 214
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=77.75 E-value=2.2 Score=32.90 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=31.5
Q ss_pred CCcEEEEecchHh--HHHHHHHHHHCCCeEEEEcCCCCH
Q psy11867 344 IGQAMIFCHTRKT--AAWLAEKMSKEGLNVGLLSGELTV 380 (399)
Q Consensus 344 ~~k~IIF~~s~~~--a~~l~~~L~~~g~~v~~lhg~~~~ 380 (399)
..++++||.+-.. +...+..|...|+++..+.||+..
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 3579999998776 888999999999999999999644
No 215
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=77.65 E-value=7.1 Score=36.49 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=49.7
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccC
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDL 244 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~ 244 (399)
.+.++||.+++++-+..+++.++.. ++.+....++...... ..+..+|+|+|. ++. ..+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~--~~~-----~Gidi 342 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA--VAA-----RGLDI 342 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH--HHH-----TTSCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC--hhh-----cCCCc
Confidence 5668999999999999999988875 4556666666543221 145678999995 222 46788
Q ss_pred CceeEEEE
Q psy11867 245 SKIKVFVL 252 (399)
Q Consensus 245 ~~~~~lVi 252 (399)
.++++||.
T Consensus 343 p~v~~Vi~ 350 (417)
T 2i4i_A 343 SNVKHVIN 350 (417)
T ss_dssp CCEEEEEE
T ss_pred ccCCEEEE
Confidence 88988885
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=77.59 E-value=0.73 Score=38.21 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|+-++++||+|+|||...
T Consensus 5 g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 678999999999999654
No 217
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=77.52 E-value=0.94 Score=40.00 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+.++++.|++|+|||..+
T Consensus 29 ~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIA 46 (265)
T ss_dssp CSCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 689999999999999654
No 218
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=77.49 E-value=22 Score=34.90 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=30.3
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHh
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFR 391 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~ 391 (399)
.++.++||++|.+..+.+++. .+.++..-..+++. ..+++.|+
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~ 434 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAIS 434 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTT
T ss_pred CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHH
Confidence 347999999999999998873 35555544445554 45677775
No 219
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=77.21 E-value=1.6 Score=33.77 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=32.6
Q ss_pred CcEEEEe-cchHhHHHHHHHHHHCCCeEEEEcCCCCHHH
Q psy11867 345 GQAMIFC-HTRKTAAWLAEKMSKEGLNVGLLSGELTVEQ 382 (399)
Q Consensus 345 ~k~IIF~-~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~ 382 (399)
.++|+|| .+-..+...+..|...|+++..|.||+..-.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W~ 128 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAYR 128 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHHH
Confidence 6899999 5777788999999999999999999976543
No 220
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=77.20 E-value=0.76 Score=42.88 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++++.||+|+|||..+-
T Consensus 51 ~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 6899999999999997653
No 221
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=77.08 E-value=4.5 Score=34.64 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=36.2
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHC-----CCeEEEEcCCCCHHHHHHH
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKE-----GLNVGLLSGELTVEQRLSI 386 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~v 386 (399)
...++||.|+++.-+.+.++.+.+. +.++..++|+....++...
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 139 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR 139 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh
Confidence 3468999999999999999988764 6789999999987766543
No 222
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.07 E-value=0.77 Score=37.67 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..++++|++|||||...-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 5779999999999997653
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.00 E-value=0.91 Score=39.83 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=29.8
Q ss_pred cccccCCCCHHHHHHHHHcC--CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEMG--FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g--~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+|+++.-.+.....+...- |..+ .++..+--..++.+++.||+|+|||...
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 46777766666666665431 1111 2222221111356999999999999654
No 224
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=76.88 E-value=6.9 Score=27.49 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=29.9
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCCe-EEEEcCCCC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGLN-VGLLSGELT 379 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 379 (399)
...++++||.+-..+...+..|...|+. +..+ ||+.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 3468999999988899999999999984 6667 8764
No 225
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=76.80 E-value=2.9 Score=45.54 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=40.3
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhCCC---------CCCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPS---------IQEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~~~---------~~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
...+|.|.-|||||.+-.--++..+... ....++|+|+=|+.=|..+.+.+..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4559999999999987776777777532 2345799999999988887766654
No 226
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=76.58 E-value=0.79 Score=38.61 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++.+++.|++|||||...-
T Consensus 25 ~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 6899999999999997654
No 227
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=76.44 E-value=3.1 Score=38.00 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=33.4
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCC---CCCCeEEEEeCcHHH-HHHHHHHHHHH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPS---IQEPQVLCLAPTYEL-AIQIGEVVAKM 196 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~---~~~~~~lil~Pt~~L-a~Q~~~~~~~~ 196 (399)
+|.-+++.|++|+|||...+--+....... ..+..++++.--..+ ..++.+.++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 378899999999999976554444332220 114568888754322 34455445544
No 228
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=76.15 E-value=0.79 Score=37.89 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5789999999999997654
No 229
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=75.96 E-value=2.3 Score=41.72 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=19.4
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRV 167 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l 167 (399)
+.++++.|.||||||.+.-.-++..+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999976544444333
No 230
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=75.79 E-value=8 Score=33.59 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=35.5
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHH
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRLSI 386 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~~v 386 (399)
...++||.|+++.-+.++++.+++. +..+..++|+....++...
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 157 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 157 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH
Confidence 3467999999999999998887665 7889999999887665433
No 231
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=75.64 E-value=2.2 Score=38.86 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=33.7
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCC---------CCC----CeEEEEeCcHHH-HHHHHHHHHHHh
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPS---------IQE----PQVLCLAPTYEL-AIQIGEVVAKMG 197 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~---------~~~----~~~lil~Pt~~L-a~Q~~~~~~~~~ 197 (399)
+|.-+++.|++|+|||...+--+....... ..+ ..++|+.--..+ ..++.+.++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 378899999999999976554444321110 112 467887754332 455555555553
No 232
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=75.61 E-value=0.89 Score=40.93 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++++.||+|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6899999999999996543
No 233
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=75.58 E-value=7.7 Score=34.88 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++-+.+.+++|+|||....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SEEEEEECCTTTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 6778888999999996543
No 234
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=75.50 E-value=2.2 Score=33.95 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=31.5
Q ss_pred CcEEEEecch--HhHHHHHHHHHHCCCeEEEEcCCCCH
Q psy11867 345 GQAMIFCHTR--KTAAWLAEKMSKEGLNVGLLSGELTV 380 (399)
Q Consensus 345 ~k~IIF~~s~--~~a~~l~~~L~~~g~~v~~lhg~~~~ 380 (399)
.++||||.+- ..+...+..|...|+++..+.||+..
T Consensus 73 ~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 73 KVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp SEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 5799999987 57888999999999999999999654
No 235
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=75.43 E-value=4.6 Score=36.51 Aligned_cols=68 Identities=9% Similarity=0.107 Sum_probs=47.8
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccccCC
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFFDLS 245 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~ 245 (399)
+.++||.|+|+.-+..+++.+... ++.+...+|+..... -..+..+|+|+|.- -...+++.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-------a~~Gidi~ 95 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-------AARGLDIP 95 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-------TTCSTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-------hhcCcccc
Confidence 457999999999998888877654 456666676643322 12456789999942 22567888
Q ss_pred ceeEEEE
Q psy11867 246 KIKVFVL 252 (399)
Q Consensus 246 ~~~~lVi 252 (399)
.+++||.
T Consensus 96 ~v~~VI~ 102 (300)
T 3i32_A 96 QVDLVVH 102 (300)
T ss_dssp CCSEEEE
T ss_pred ceeEEEE
Confidence 8888885
No 236
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.31 E-value=1.9 Score=40.15 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=30.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHH-HHhhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQE-TALPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~-~ai~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+|+++.-.....+.|...-. .+... ..+..+ ..+++.+++.||+|+|||..+-
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhc-cCCCceEEEECCCCCCHHHHHH
Confidence 357777655666666654310 01000 001111 2236899999999999997553
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=75.11 E-value=0.91 Score=38.61 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+++.||+|+|||...
T Consensus 8 g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 788999999999999654
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.10 E-value=0.87 Score=38.45 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|+-+.+.||+|+|||...
T Consensus 4 g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp -CCEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 688999999999999754
No 239
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=75.05 E-value=2.3 Score=41.64 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=21.4
Q ss_pred HHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 129 IQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 129 iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.=..++-.+.. +.++++.||+|+|||..+
T Consensus 30 ~i~~l~~al~~--~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 30 AIRLCLLAALS--GESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHH--TCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHhc--CCeeEeecCchHHHHHHH
Confidence 33444455555 699999999999999654
No 240
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=74.96 E-value=1.2 Score=48.43 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=29.4
Q ss_pred EEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcH
Q psy11867 146 IAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTY 183 (399)
Q Consensus 146 i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 183 (399)
+|.|..|||||.+.+--+...+.....+.++|+|||..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc
Confidence 67789999999887766666665544557899999976
No 241
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.90 E-value=1 Score=40.08 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+.+.||||||||...
T Consensus 25 g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SEEEEEECSTTCSHHHHH
T ss_pred CCEEEEECCCCccHHHHH
Confidence 788999999999999653
No 242
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=74.88 E-value=0.96 Score=37.25 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|++|||||...-
T Consensus 11 ~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHH
Confidence 6889999999999997654
No 243
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=74.88 E-value=0.97 Score=38.39 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|+-+++.+|||+|||...
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 788999999999998543
No 244
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=74.88 E-value=3.1 Score=33.10 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=31.2
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCC-eEEEEcCCCC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGL-NVGLLSGELT 379 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~ 379 (399)
..++||||.+-..+...+..|...|+ +|..|.||+.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 46899999998888899999999999 5999999974
No 245
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.57 E-value=2.5 Score=36.01 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=24.6
Q ss_pred ChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 126 PSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 126 p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
-+.-|..++..+-. |.-+.+.+|+|||||...
T Consensus 8 k~~g~~~~l~~i~~--Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDT--NTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHH--CSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccC--CCEEEEECCCCCCHHHHH
Confidence 34456677777755 788999999999999754
No 246
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=74.55 E-value=0.94 Score=42.29 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+..+++.||||||||...
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568999999999999643
No 247
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=74.52 E-value=2.1 Score=40.23 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
+.|+++.|+||+|||...-.-+..... .+.+++++=|..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESSCC
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCCcC
Confidence 689999999999999765443333332 3445667666654
No 248
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.34 E-value=0.89 Score=41.98 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.-+++.||||||||....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997654
No 249
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.97 E-value=6.6 Score=37.13 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=26.3
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCC---CCCCeEEEEeC
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPS---IQEPQVLCLAP 181 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~---~~~~~~lil~P 181 (399)
+|.-+.+.+|+|+|||.....-++...... ..+..++++.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 378899999999999976553333333221 12456777764
No 250
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=73.67 E-value=0.98 Score=39.70 Aligned_cols=52 Identities=29% Similarity=0.322 Sum_probs=28.9
Q ss_pred cccccCCCCHHHHHHHHHcC--CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEMG--FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g--~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+|+++.-.+...+.+...- +..|..++ .+-...++.+++.||+|+|||...
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQ-----KLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC----------CCCCEEEEECCTTSCHHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHH-----HcCCCCCCeEEEECcCCCCHHHHH
Confidence 46777766666666665420 11111111 110112578999999999999654
No 251
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=73.67 E-value=1 Score=40.68 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
++.+++.||+|+|||...
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 578999999999999654
No 252
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.49 E-value=0.96 Score=42.01 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++.+++.||+|+|||....
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5799999999999997654
No 253
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=73.44 E-value=2.5 Score=41.72 Aligned_cols=58 Identities=10% Similarity=0.205 Sum_probs=42.1
Q ss_pred HHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 334 AVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 334 ~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
.+..++.. ..+.++||++|.+.++.+++.|.. .. ...+|.. .+|..+++.|++|. .||
T Consensus 375 ~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il 432 (540)
T 2vl7_A 375 LLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLV 432 (540)
T ss_dssp HHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEE
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEE
Confidence 34444443 457899999999999999988864 33 3456654 57889999999875 444
No 254
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=73.03 E-value=5.1 Score=36.42 Aligned_cols=50 Identities=10% Similarity=-0.084 Sum_probs=31.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAK 195 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 195 (399)
|.-+++.|++|+|||...+--+...... +..+++++-- .-..|+...+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC-CCHHHHHHHHHH
Confidence 7889999999999996554444444433 2457777733 333444444443
No 255
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=73.02 E-value=11 Score=34.87 Aligned_cols=70 Identities=10% Similarity=0.099 Sum_probs=49.3
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccC
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDL 244 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~ 244 (399)
...++||++++++-+..+++.++.. ++.+....++...... ..+...|+|+|.- -...+++
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-------~~~Gidi 324 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL-------LTRGIDI 324 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC-------SSSSCCC
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-------cccCCCc
Confidence 4457999999999999999998876 3445566666443221 1456689999942 2256788
Q ss_pred CceeEEEEe
Q psy11867 245 SKIKVFVLD 253 (399)
Q Consensus 245 ~~~~~lViD 253 (399)
..++++|.-
T Consensus 325 p~~~~Vi~~ 333 (400)
T 1s2m_A 325 QAVNVVINF 333 (400)
T ss_dssp TTEEEEEES
T ss_pred cCCCEEEEe
Confidence 899988863
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=72.92 E-value=0.95 Score=37.57 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+++.|++|||||...
T Consensus 9 g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TEEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 688999999999999644
No 257
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.89 E-value=1.1 Score=41.86 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|..+++.||||||||..
T Consensus 175 G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TCCEEEEESSSSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 89999999999999964
No 258
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=72.85 E-value=4.1 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=31.7
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELT 379 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 379 (399)
...++++||.+-..+...+..|...|+....+.||+.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 3468999999988999999999999986588889965
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=72.78 E-value=1.2 Score=37.67 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|+-++++||+|||||...
T Consensus 12 ~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 789999999999999654
No 260
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=72.62 E-value=1.1 Score=43.35 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++++++.||+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 5899999999999997654
No 261
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=72.51 E-value=2.5 Score=33.25 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=32.6
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCC-eEEEEcCCCCH
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGL-NVGLLSGELTV 380 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~~ 380 (399)
...+++|||.+-..+...+..|...|+ +|..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 346899999998889999999999999 69999999644
No 262
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=72.40 E-value=1.5 Score=39.91 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+.++++.|++|+|||..+
T Consensus 25 ~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TSCEEEESCTTSCHHHHH
T ss_pred CCcEEEECCCCchHHHHH
Confidence 689999999999999754
No 263
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=72.18 E-value=7.2 Score=42.34 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=50.3
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...+++|.|+++.-|.+.++.+.+. +.++..++|..+..++..+++.+..|..+|+|
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV 711 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 711 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 4468999999999999988888753 67899999999999999999999999998875
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=72.17 E-value=1.2 Score=36.26 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+..+++.|++|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999754
No 265
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=72.04 E-value=2.4 Score=31.60 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=32.5
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCC-eEEEEcCCCCHH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGL-NVGLLSGELTVE 381 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~~~ 381 (399)
..++++||.+-..+...+..|...|+ ++..+.||+..-
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 46899999998889999999999998 589999997544
No 266
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=71.96 E-value=1.2 Score=36.99 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|++|||||.+.-
T Consensus 10 ~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999997653
No 267
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=71.79 E-value=10 Score=36.26 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=25.4
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEe--CcHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLA--PTYELA 186 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~--Pt~~La 186 (399)
++.++++++.|+|||....--+...... .+.+++++. |.+..+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~--~G~kVllvd~D~~r~~a 144 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK--HKKKVLVVSADVYRPAA 144 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT--SCCCEEEEECCCSSTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEEecCCCCccH
Confidence 5678888999999997654333222222 134566665 444444
No 268
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=71.67 E-value=1.2 Score=39.73 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=30.1
Q ss_pred cccccCCCCHHHHHHHHHcC--CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEMG--FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g--~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+|+++.-.+...+.+...- |..+ .++..+--...+.+++.+|+|+|||...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 45777776677766665431 1111 1222221111355999999999999654
No 269
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=71.66 E-value=1.9 Score=36.52 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=23.5
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
|.-+++.+++|+|||.....-+. ..+..++++.-
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~------~~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL------LSGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH------HHCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH------HcCCcEEEEEC
Confidence 78899999999999976544333 12345777763
No 270
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=71.64 E-value=29 Score=35.06 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=54.6
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccccC
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFFDL 244 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~ 244 (399)
.+.++||.|+|+.-+..+.+.++.. ++.+....++..... -..+..+|+|||-- -.+.+++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-------l~~GlDi 511 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-------LREGLDI 511 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-------CSTTCCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-------hhCCccc
Confidence 3568999999999999999888876 445556665543211 12356789999952 2357788
Q ss_pred CceeEEEEechhhH
Q psy11867 245 SKIKVFVLDEADVM 258 (399)
Q Consensus 245 ~~~~~lViDEah~l 258 (399)
.+++++|+-+++.+
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 99999999999875
No 271
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=71.62 E-value=2.6 Score=32.65 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=32.0
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCCe-EEEEcCCCCH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGLN-VGLLSGELTV 380 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~ 380 (399)
..++++||.+-..+...+..|...|+. |..|.||+..
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 468999999988899999999999984 9999999754
No 272
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=71.56 E-value=1.3 Score=41.51 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5789999999999996553
No 273
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=71.56 E-value=1.1 Score=40.84 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.-+++.||||||||..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 3557889999999996654
No 274
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=71.45 E-value=2.4 Score=33.21 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCCe-EEEEcCCCCH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGLN-VGLLSGELTV 380 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~ 380 (399)
..+++|||.+-..+...+..|...|+. |..|.||+..
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 357999999988888999999999995 9999999654
No 275
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=71.34 E-value=1.2 Score=40.70 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
.-++++||||||||..+.
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 457889999999996654
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=71.31 E-value=1.1 Score=36.19 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
.-++++|++|||||...-
T Consensus 2 ~~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAK 19 (179)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 357899999999997543
No 277
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=71.25 E-value=1.3 Score=37.19 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+.+.||+|||||...
T Consensus 7 g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 678899999999999754
No 278
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=71.23 E-value=1.3 Score=37.22 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+.+.|++|||||...
T Consensus 6 g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 688999999999999654
No 279
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=71.14 E-value=1.3 Score=40.24 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+.++++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 589999999999999654
No 280
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=71.03 E-value=7.9 Score=34.40 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCcEEEEec---------------------chHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 344 IGQAMIFCH---------------------TRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 344 ~~k~IIF~~---------------------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
.|-+|||+| +...++.|.+.|+.+|+.|. ++.+++.++-.+++++|..
T Consensus 17 rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 17 RGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp CCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 367888887 44689999999999999975 6678999999999999975
No 281
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=70.81 E-value=5.2 Score=35.50 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCCChHHHHH-HhhhhhcCC-C--CcEEEEccCCCCceehhH
Q psy11867 112 PELLKGVYEMGFYAPSKIQET-ALPTLLADP-P--HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 112 ~~l~~~l~~~g~~~p~~iQ~~-ai~~ll~~~-g--~~vi~~a~TGsGKT~~~~ 160 (399)
..+.+-|.-.|+. +++.. ++..++.+. + ..+++.||.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3677778777875 55533 345555542 2 359999999999997654
No 282
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=70.53 E-value=1.2 Score=39.28 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=13.8
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
-++++||+|||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47889999999996543
No 283
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=70.43 E-value=1.4 Score=37.11 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|..+++.|+.|||||...-
T Consensus 29 g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 7889999999999997543
No 284
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=70.35 E-value=4.3 Score=37.41 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=32.6
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCC---CCCCeEEEEeCcHHH-HHHHHHHHHHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPS---IQEPQVLCLAPTYEL-AIQIGEVVAKM 196 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~---~~~~~~lil~Pt~~L-a~Q~~~~~~~~ 196 (399)
|.-+++.|++|+|||...+-.+....... ..+..++|+.-...+ ..++.+.++.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 67889999999999976554444322211 124568888754321 33444444444
No 285
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=70.29 E-value=18 Score=34.43 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehhHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l 161 (399)
++-+.+.++.|+|||.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56788889999999976543
No 286
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=70.26 E-value=14 Score=34.26 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=49.5
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCC
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLS 245 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~ 245 (399)
+.++||.++++.-+..+++.++.. +..+....++...... ..+..+|+|+|.- -...+++.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-------~~~Gidip 333 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-------CARGIDVE 333 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-------GTSSCCCT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-------cccCCCcc
Confidence 457999999999999999998876 3445566666433221 1456789999952 22577888
Q ss_pred ceeEEEEec
Q psy11867 246 KIKVFVLDE 254 (399)
Q Consensus 246 ~~~~lViDE 254 (399)
++++||.-.
T Consensus 334 ~~~~Vi~~~ 342 (412)
T 3fht_A 334 QVSVVINFD 342 (412)
T ss_dssp TEEEEEESS
T ss_pred CCCEEEEEC
Confidence 999988533
No 287
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=70.18 E-value=3.5 Score=40.88 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=20.4
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVN 168 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~ 168 (399)
..|+++.|.||||||.+.-.-+++.+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999776544555443
No 288
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=69.83 E-value=13 Score=30.73 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=39.9
Q ss_pred CcEEEEecch-----------HhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 345 GQAMIFCHTR-----------KTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 345 ~k~IIF~~s~-----------~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
+.+|||+|.. ..++.|++.|+.+|+.|. ++.+++..+-..++++|.+
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 4578887753 789999999999999975 5678999999999999964
No 289
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=69.78 E-value=1.5 Score=40.26 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.++++.||+|+|||...-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4679999999999997543
No 290
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=69.51 E-value=1.8 Score=36.66 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=16.5
Q ss_pred CcEEEEccCCCCceehhHHHHH
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTML 164 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il 164 (399)
.-.++.|+.|||||.....-++
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999986544333
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=69.50 E-value=1.5 Score=36.44 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCceehh
Q psy11867 143 HNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~ 159 (399)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 55788999999999654
No 292
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.45 E-value=1.3 Score=40.05 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 579999999999997654
No 293
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=69.31 E-value=1.4 Score=41.39 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=29.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+|+++.=.....+.+...-. .|. ...+.+..+ ..+++++++.||+|+|||..+-
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~-~~~-~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVI-LPS-LRPELFTGL-RAPARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH-HHH-HCTTTSCGG-GCCCSEEEEESSTTSCHHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHH-Hhc-cCHHHhccc-CCCCceEEEECCCCCCHHHHHH
Confidence 357777555666666654310 000 000000111 1236899999999999996553
No 294
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=69.30 E-value=10 Score=34.92 Aligned_cols=52 Identities=19% Similarity=0.385 Sum_probs=39.8
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCccc
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE-----GLNVGLLSGELTVEQRLSILDRFREGEFKIY 398 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~v~~~F~~G~~~IL 398 (399)
..++||.|+++.-+.+.++.+.+. +..+..++|+.+..++...+ ..+..+|+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~ii 132 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKNCPHIV 132 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH---HHSCCSEE
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH---hcCCCCEE
Confidence 358999999999999998888764 78899999999877665443 34444544
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=69.30 E-value=1.5 Score=37.13 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|+-++++||+|+|||...
T Consensus 19 g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEECcCCCCHHHHH
Confidence 788999999999999654
No 296
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=69.19 E-value=3.1 Score=32.60 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=31.8
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCC-eEEEEcCCCCH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGL-NVGLLSGELTV 380 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~~ 380 (399)
..++++||.+-..+...+..|...|+ +|..|.||+..
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 36799999998889999999999999 49999999643
No 297
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=69.04 E-value=1.3 Score=36.31 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|.-+.+.||+|||||..+-
T Consensus 9 gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 6788999999999997554
No 298
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=68.85 E-value=1.9 Score=37.12 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=12.3
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|.-+.+.||+|||||...-
T Consensus 27 G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp CCEEEEECSCC----CHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 7888999999999997643
No 299
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=68.74 E-value=1.2 Score=40.71 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+.++++.||+|+|||...
T Consensus 46 ~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp TCCEEEESCCCHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 689999999999999654
No 300
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=68.53 E-value=2.1 Score=41.42 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCCceehhH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~ 160 (399)
...++++.||+|+|||...-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 36799999999999997654
No 301
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.48 E-value=1.5 Score=40.35 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|..+.+.||||||||..
T Consensus 171 g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp TCCEEEEESTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 79999999999999963
No 302
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=71.59 E-value=1 Score=36.84 Aligned_cols=71 Identities=8% Similarity=0.089 Sum_probs=44.3
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccccC
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFFDL 244 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~ 244 (399)
.+.++||.++++.-+..+++.++.. ++.+....|+..... -..+..+|+|+|. +.. ..+++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~-----~Gid~ 96 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD--VAA-----RGIDI 96 (170)
Confidence 4467999999999999888888765 334444444432211 1134557999993 222 35567
Q ss_pred CceeEEEEec
Q psy11867 245 SKIKVFVLDE 254 (399)
Q Consensus 245 ~~~~~lViDE 254 (399)
..++++|.-+
T Consensus 97 ~~~~~Vi~~~ 106 (170)
T 2yjt_D 97 PDVSHVFNFD 106 (170)
Confidence 7777777533
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=68.34 E-value=1.4 Score=36.02 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|..+++.|+.|||||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 6789999999999997543
No 304
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=68.32 E-value=0.89 Score=40.18 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++.+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 5779999999999996543
No 305
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=68.00 E-value=1.7 Score=40.76 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|..+++.||||||||...
T Consensus 136 g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SEEEEEECSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 788999999999999643
No 306
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=67.98 E-value=9 Score=37.38 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=22.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
+..+++++++|+|||....--+..... .+.+++++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~---~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR---KGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEec
Confidence 457889999999999765432222221 2344666664
No 307
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=67.89 E-value=3 Score=46.79 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=58.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (399)
|+-+.+.+|.|||||...+..+.+.-. .+..|+++.+-.+|.... +++++-.+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~---~g~~~~~i~~e~~~~~~~---~~~~Gv~~~-------------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY---ARKLGVDID-------------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH---HHHTTCCGG--------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCCCCCHHH---HHHcCCCHH--------------------
Confidence 688999999999999887655544332 355699999877776543 666655432
Q ss_pred CcEEEeCchhHHHhhhcc-ccccCCceeEEEEechhhHh
Q psy11867 222 EQIIIGTPGKVLDWGLKY-RFFDLSKIKVFVLDEADVMI 259 (399)
Q Consensus 222 ~~IlV~Tp~~l~~~~~~~-~~~~~~~~~~lViDEah~l~ 259 (399)
+++|.-|+.--+++.-- ..+.-..+++||||.+..+.
T Consensus 1485 -~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1485 -NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp -GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCC
Confidence 26666665432221110 11223468899999998775
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=67.86 E-value=1.6 Score=36.02 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|++|||||...-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 309
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=67.44 E-value=4.3 Score=32.09 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=31.5
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCCe-EEEEcCCCCH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGLN-VGLLSGELTV 380 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~ 380 (399)
..++++||.+-..+...+..|...|+. |..+.||+..
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 357999999988899999999999984 8899998643
No 310
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=67.40 E-value=11 Score=32.32 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=36.5
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRLSILD 388 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~~v~~ 388 (399)
..++||.|+++.-+.++++.+.+. +..+..++|+.+..++...+.
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 150 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc
Confidence 457999999999999988777653 889999999998877655443
No 311
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=67.39 E-value=1.5 Score=35.39 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=14.1
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.|+.|||||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997553
No 312
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=67.31 E-value=8.8 Score=37.31 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|.-+.+.|++|+|||...-
T Consensus 293 GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCcccHHHHHH
Confidence 6678899999999997543
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=67.12 E-value=1.6 Score=35.65 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCceehh
Q psy11867 143 HNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~ 159 (399)
.-+++.|++|||||...
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 46889999999999754
No 314
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=67.05 E-value=3 Score=38.04 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.2
Q ss_pred cEEEEccCCCCceehh
Q psy11867 144 NMIAQSQSGTGKTAAF 159 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~ 159 (399)
-+++.|+.|||||...
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 4678899999999754
No 315
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=66.99 E-value=16 Score=33.03 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=48.5
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccC
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDL 244 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~ 244 (399)
.+.++||++++++-+..+++.++.. +..+....++...... ..+..+|+|+|. .+. ..+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~--~~~-----~Gid~ 304 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD--VMS-----RGIDV 304 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT--THH-----HHCCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC--hhh-----cCCCc
Confidence 4567999999999999999988876 3455566665433221 144668999994 222 35677
Q ss_pred CceeEEEEec
Q psy11867 245 SKIKVFVLDE 254 (399)
Q Consensus 245 ~~~~~lViDE 254 (399)
.+++++|.-+
T Consensus 305 ~~~~~Vi~~~ 314 (367)
T 1hv8_A 305 NDLNCVINYH 314 (367)
T ss_dssp SCCSEEEESS
T ss_pred ccCCEEEEec
Confidence 7888888643
No 316
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=66.99 E-value=1.7 Score=39.13 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.-++++||+|||||...-
T Consensus 33 ~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp CEEEEEECCTTSCTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5779999999999997543
No 317
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=66.92 E-value=4.4 Score=31.55 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=31.0
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCC-eEEEEcCCCC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGL-NVGLLSGELT 379 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~ 379 (399)
..++++||.+-..+...+..|...|+ +|..+.||+.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 36899999998888888999999999 5889999983
No 318
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=66.49 E-value=1.4 Score=36.42 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|..+++.|+.|||||...-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5789999999999997654
No 319
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=66.39 E-value=1.6 Score=36.61 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCCceehh
Q psy11867 141 PPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~ 159 (399)
+|.-+.+.|++|||||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3788999999999999654
No 320
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=66.29 E-value=1.6 Score=36.05 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5778999999999997653
No 321
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=66.17 E-value=2 Score=36.80 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+.+.||+|+|||...
T Consensus 23 G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 788999999999999644
No 322
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=65.80 E-value=19 Score=33.47 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=48.8
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCC
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLS 245 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~ 245 (399)
..++||.|+++.-+..+++.++.. ++.+....|+...... ..+...|+|+|.- -...+++.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-------~~~Gidi~ 343 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-------WARGLDVP 343 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-------GSSSCCCT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-------hhCcCCcc
Confidence 347999999999999999888875 3455566666443221 1456789999952 23567888
Q ss_pred ceeEEEEe
Q psy11867 246 KIKVFVLD 253 (399)
Q Consensus 246 ~~~~lViD 253 (399)
++++||.-
T Consensus 344 ~v~~Vi~~ 351 (410)
T 2j0s_A 344 QVSLIINY 351 (410)
T ss_dssp TEEEEEES
T ss_pred cCCEEEEE
Confidence 99998863
No 323
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=65.62 E-value=2 Score=37.00 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+++.||+|+|||...
T Consensus 16 G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 788999999999999754
No 324
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=65.37 E-value=3.7 Score=39.46 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=26.4
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
+|.-+++.|++|+|||...+--+...... +..++|++-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 47889999999999997655444444433 345777763
No 325
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=65.35 E-value=8.1 Score=34.17 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=31.0
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCC--------CCCCeEEEEeCcHHHHHHHHHHHHHHh
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPS--------IQEPQVLCLAPTYELAIQIGEVVAKMG 197 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~--------~~~~~~lil~Pt~~La~Q~~~~~~~~~ 197 (399)
|.-+++.|++|+|||.....-+.. +... .....++++.--..+ .++...+..++
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~-~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~~g 91 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ-IAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHALG 91 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH-HHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH-HhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHHHH
Confidence 789999999999999765543332 2121 012357776643322 44444455444
No 326
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=65.22 E-value=2.3 Score=35.68 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
..-++++|+.|||||...-
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 327
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=64.95 E-value=43 Score=33.76 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhh-------hhccCCcEEEeCchhHHHhhhccccccC
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLER-------NKKITEQIIIGTPGKVLDWGLKYRFFDL 244 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~Tp~~l~~~~~~~~~~~~ 244 (399)
.+.++||.|+|+.-+..+.+.+... ++.+.+..++..... -..+..+|+|||-- -...+++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-------l~~GlDi 505 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-------LREGLDI 505 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-------CCTTCCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-------hhcCccC
Confidence 3568999999999999999888876 445555566543211 12356789999942 2357788
Q ss_pred CceeEEEEechhhH
Q psy11867 245 SKIKVFVLDEADVM 258 (399)
Q Consensus 245 ~~~~~lViDEah~l 258 (399)
..++++|+=+++..
T Consensus 506 p~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 506 PEVSLVAILDADKE 519 (664)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCCEEEEeCCccc
Confidence 89999999888764
No 328
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.94 E-value=5.5 Score=46.95 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=31.5
Q ss_pred CHHHHHHHHHcCCCCChHHHHH----HhhhhhcCCCCcEEEEccCCCCceehhHH
Q psy11867 111 KPELLKGVYEMGFYAPSKIQET----ALPTLLADPPHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 111 ~~~l~~~l~~~g~~~p~~iQ~~----ai~~ll~~~g~~vi~~a~TGsGKT~~~~l 161 (399)
...+.+.+.+.|+. +++.+.. ....+.. .+.+++.||||||||.++-.
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~--r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKT--QQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHH--CSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHh--cceEEEECCCCCCHHHHHHH
Confidence 35566666677764 5554422 2233333 58899999999999988753
No 329
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=64.92 E-value=4.2 Score=37.70 Aligned_cols=38 Identities=8% Similarity=0.004 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
|+-+++.+++|+|||...+..+...... +..++++.--
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 7889999999999997655444433322 3457777743
No 330
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=64.67 E-value=20 Score=29.53 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=40.4
Q ss_pred CcEEEEecch--------------HhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 345 GQAMIFCHTR--------------KTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 345 ~k~IIF~~s~--------------~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
+.+|||+|.. ..++.|.+.|+.+|+.|.++ .+++..+-...+++|...
T Consensus 45 G~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 45 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp CEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhhh
Confidence 6689998853 57999999999999998655 589999999999999753
No 331
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=64.37 E-value=4.4 Score=37.69 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=26.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCc
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPT 182 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 182 (399)
|+-+++.+++|+|||...+-.+...... +..++++..-
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 7889999999999997765544443322 3358888753
No 332
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=64.06 E-value=2.8 Score=43.25 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCCCceehhH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~ 160 (399)
...++++.||+|+|||...-
T Consensus 200 ~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 46799999999999997654
No 333
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=64.02 E-value=2 Score=39.39 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.2
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
..++++||||||||....
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578999999999997654
No 334
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=63.92 E-value=4.3 Score=36.62 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCCceehhH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~ 160 (399)
+|+-+++.+++|+|||....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 37889999999999997554
No 335
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.80 E-value=38 Score=24.31 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=48.7
Q ss_pred EEEeCChhhHHHHHHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHH
Q psy11867 322 YVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILD 388 (399)
Q Consensus 322 ~~~~~~~~~k~~~l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~ 388 (399)
+..+...++-...+..+.......+++|..|.+.-...+.+.+++.|+++..+--+....+-++.-+
T Consensus 29 vrdvndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkr 95 (134)
T 2lci_A 29 VRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKR 95 (134)
T ss_dssp EEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHH
T ss_pred eeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHH
Confidence 3344444544455666666667789999999999888888889999999999988877666444333
No 336
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=63.77 E-value=18 Score=29.31 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=33.6
Q ss_pred hHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 354 RKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 354 ~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
...++.|.+.|+.+|+.| .+|.+++..+-...++.|..-
T Consensus 54 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 577899999999999998 567889999999999999643
No 337
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=63.76 E-value=17 Score=32.74 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=41.1
Q ss_pred CcEEEEecc-----------hHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 345 GQAMIFCHT-----------RKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 345 ~k~IIF~~s-----------~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
+-+|||+|. ...++.|++.|+.+|+.|. ++.+++.++-..++++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 458999998 5789999999999999975 6668999999999999964
No 338
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=63.73 E-value=2.2 Score=36.14 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCCceehh
Q psy11867 141 PPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~ 159 (399)
+|.-+.+.||+|||||...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3778889999999999643
No 339
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=63.49 E-value=2.2 Score=35.32 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|+.|||||...-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999997553
No 340
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=63.46 E-value=7.7 Score=46.36 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHcCCCCChHHHHHHh----hhhhcCCCCcEEEEccCCCCceehhHH
Q psy11867 110 LKPELLKGVYEMGFYAPSKIQETAL----PTLLADPPHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 110 l~~~l~~~l~~~g~~~p~~iQ~~ai----~~ll~~~g~~vi~~a~TGsGKT~~~~l 161 (399)
|...+.+.+.++|+. |++.+..=+ ..+.. .+.+++.||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~v--RhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNI--NHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTT--CSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHh--eeeEEEECCCCCCHHHHHHH
Confidence 446666777778874 555443322 22233 57899999999999998853
No 341
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=63.45 E-value=2.1 Score=39.56 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
.-++++||||||||....
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 468899999999997653
No 342
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=63.35 E-value=4.6 Score=35.97 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=43.4
Q ss_pred CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
.|-+|||+|....++.|.+.|+.+|+.|. +|.+++.++-...+++|...
T Consensus 43 rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 43 LGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHTC
T ss_pred ceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHhc
Confidence 36799999999999999999999999875 46689999999999999764
No 343
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=63.09 E-value=2.1 Score=40.50 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
.-+++.||||||||....
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 457899999999996553
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=63.05 E-value=2.4 Score=36.17 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|+.|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 6789999999999997653
No 345
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=62.99 E-value=15 Score=30.34 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=33.2
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC-----CCeEEEEcCCCCHHHHH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE-----GLNVGLLSGELTVEQRL 384 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~~R~ 384 (399)
..++||.|+++.-+.++++.+.+. +..+..++|+....+..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 116 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI 116 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH
Confidence 357999999999999998887653 57889999998876543
No 346
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=62.95 E-value=2.8 Score=39.02 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=18.4
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..++.+...-+++-|+||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 344556643455777889999999543
No 347
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=62.86 E-value=2.2 Score=34.55 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
-+++++.++.|||||...-
T Consensus 7 ~~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp -CEEEEESCTTSSHHHHHH
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 3789999999999997654
No 348
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=62.79 E-value=2.4 Score=40.67 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++++++.+|+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 5889999999999997653
No 349
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=62.59 E-value=21 Score=33.72 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=47.8
Q ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCCce
Q psy11867 175 QVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLSKI 247 (399)
Q Consensus 175 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~ 247 (399)
.+||.|+++.-|..+++.+++. ++.+....|+...... ..+...|+|||.- -.+.+++.++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v-------~~rGlDi~~v 369 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV-------ASRGLDIKNI 369 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG-------GTSSCCCTTC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh-------hhCCCCcccC
Confidence 3999999999999999888875 4556666666443221 1456789999962 2257788899
Q ss_pred eEEEE
Q psy11867 248 KVFVL 252 (399)
Q Consensus 248 ~~lVi 252 (399)
++||.
T Consensus 370 ~~VI~ 374 (434)
T 2db3_A 370 KHVIN 374 (434)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99886
No 350
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=62.57 E-value=2.4 Score=34.79 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|++|||||...-
T Consensus 2 ~~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CCSEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3568999999999997653
No 351
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=62.54 E-value=2.3 Score=36.28 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCCChHHHHHHhhhhhcC-C-CCcEEEEccCCCCceehh
Q psy11867 113 ELLKGVYEMGFYAPSKIQETALPTLLAD-P-PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 113 ~l~~~l~~~g~~~p~~iQ~~ai~~ll~~-~-g~~vi~~a~TGsGKT~~~ 159 (399)
.+.+-|.-.|+ .+... ..++..++.+ + .+.+++.||.|+|||..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 44455544443 23333 3444444444 1 246999999999999654
No 352
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=62.44 E-value=2.1 Score=35.41 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4678999999999997653
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=62.28 E-value=2.5 Score=34.55 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=12.1
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5778999999999997654
No 354
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=62.20 E-value=5 Score=36.99 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=25.4
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
|.-+++.|++|+|||...+--+..... .+..++|++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl 82 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL 82 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 788999999999999755444333333 3445777774
No 355
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=62.05 E-value=3.2 Score=41.55 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=13.8
Q ss_pred cEEEEccCCCCceeh
Q psy11867 144 NMIAQSQSGTGKTAA 158 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~ 158 (399)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999953
No 356
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=61.92 E-value=1.8 Score=35.91 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|.-+++.||+|+|||...-
T Consensus 2 g~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3567889999999997543
No 357
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=61.88 E-value=2.6 Score=35.64 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+.+.||+|+|||...
T Consensus 20 Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 788999999999999654
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=61.84 E-value=2.6 Score=35.22 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|..+++.|+.|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 6889999999999997653
No 359
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=61.80 E-value=3.1 Score=38.18 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=17.2
Q ss_pred hhhhcCCCCcEEEEccCCCCceehh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
..++.+...-+++-|+||||||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445643445778899999999653
No 360
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=61.64 E-value=3.3 Score=38.03 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
..++++.||+|+|||...-
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCCEEEESSTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3789999999999996543
No 361
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=61.12 E-value=2.8 Score=36.12 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|++|||||...-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 6789999999999997654
No 362
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=61.12 E-value=2.5 Score=36.22 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+..+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 578999999999999755
No 363
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=61.05 E-value=2.4 Score=34.76 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|..+++.++.|||||...
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 678899999999999754
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=60.98 E-value=2.8 Score=35.79 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5789999999999997654
No 365
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=60.96 E-value=5.4 Score=35.68 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=23.7
Q ss_pred CCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 142 PHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
|.-+++.|++|+|||.....-+...... .+..++++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeC
Confidence 7889999999999997554332222211 1224666653
No 366
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=60.81 E-value=3 Score=38.55 Aligned_cols=25 Identities=32% Similarity=0.415 Sum_probs=17.2
Q ss_pred hhhhcCCCCcEEEEccCCCCceehh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
..++.+..--+++-|+||||||...
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445643445678899999999653
No 367
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=60.39 E-value=2.4 Score=35.70 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+.+.|++|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 567889999999999754
No 368
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=60.10 E-value=2.5 Score=35.44 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
...+++.|+.|||||...
T Consensus 15 ~~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999754
No 369
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=60.10 E-value=19 Score=34.32 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=43.4
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchh---hhhhccCCcEEEeCchhHHHhhhccccccCCceeE
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENL---ERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKV 249 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~ 249 (399)
+.++||+||+++-+..+++.++.. ++.+....|.... ..-..+..+|+|||.- -...+++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v-------~e~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFEREYPTIKQKKPDFILATDI-------AEMGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC--------CCCSEEEESSS-------TTCCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHHHHHhhhcCCCceEEEECCh-------hheeeccC-ceE
Confidence 457999999999999999998876 3455555553211 1112456689999952 12456777 877
Q ss_pred EE
Q psy11867 250 FV 251 (399)
Q Consensus 250 lV 251 (399)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 370
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=59.99 E-value=2.8 Score=35.02 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|+.|||||...-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5679999999999997653
No 371
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=59.88 E-value=3.5 Score=38.25 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=16.8
Q ss_pred hhhcCCCCcEEEEccCCCCceehh
Q psy11867 136 TLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 136 ~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.++.+...-+++-|+||||||...
T Consensus 84 ~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 84 AVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceeEEeecCCCCCCCEEe
Confidence 345543456677899999999553
No 372
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=59.75 E-value=3.1 Score=43.15 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=33.8
Q ss_pred ccccccCCCCHHHHHHHHHcC---CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 102 VKTFEALHLKPELLKGVYEMG---FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 102 ~~~f~~~~l~~~l~~~l~~~g---~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
-.+|++.+......+.|.+.- ..+|..+ ..+-..+++.+++.+|+|+|||+.+
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f-----~~~g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKF-----LKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGG-----SSSCCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHH-----HhcCCCCCceEEEecCCCCCchHHH
Confidence 356888888888888887641 1122111 1111123688999999999999654
No 373
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=59.74 E-value=3.5 Score=38.47 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=17.1
Q ss_pred hhhhcCCCCcEEEEccCCCCceehh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
..++.+...-+++-|+||||||...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 3445543445677899999999653
No 374
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=59.64 E-value=13 Score=32.81 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=33.2
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCC-eEEEEcCCCCHHH
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGL-NVGLLSGELTVEQ 382 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~~~~ 382 (399)
...++|+||.+-..+...+..|...|+ ++..|.|++..-.
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~ 269 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWG 269 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC--
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHh
Confidence 346899999998889999999999999 5999999987653
No 375
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=59.62 E-value=2.8 Score=34.17 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
..+++.++.|||||...-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368999999999997653
No 376
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=59.43 E-value=3.5 Score=38.53 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=17.1
Q ss_pred hhhhcCCCCcEEEEccCCCCceehh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
..++.+...-+++-|+||||||...
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445643455677889999999543
No 377
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=59.41 E-value=21 Score=32.35 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=40.7
Q ss_pred CcEEEEecc-------------hHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 345 GQAMIFCHT-------------RKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 345 ~k~IIF~~s-------------~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
+-+|||.|. ...++.|++.|+.+|+.|. ++.+++..+-..++++|..-
T Consensus 61 g~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 61 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHSS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 567888775 6789999999999999975 56789999999999999753
No 378
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=59.38 E-value=2.8 Score=34.80 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+.-+++.|++|||||...
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 578999999999999754
No 379
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=59.38 E-value=4.1 Score=37.71 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=19.4
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..++.+...-+++-|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 556667753445677899999999654
No 380
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=59.35 E-value=17 Score=33.02 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=41.1
Q ss_pred CCcEEEEecch------------HhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 344 IGQAMIFCHTR------------KTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 344 ~~k~IIF~~s~------------~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
.+-+|||+|.. ..++.|.+.|+.+|+.| .+|.+++..+-.+++++|..
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHHH
Confidence 35689988763 78999999999999997 56779999999999999974
No 381
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=59.26 E-value=11 Score=32.04 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=31.9
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRL 384 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~ 384 (399)
..++||.|+++.-+.+.++.+... +..+..++|+.+..+..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 141 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 141 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHH
Confidence 457999999999999999888775 47899999987765543
No 382
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=59.21 E-value=3.6 Score=38.22 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=16.8
Q ss_pred hhhcCCCCcEEEEccCCCCceehh
Q psy11867 136 TLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 136 ~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.++.+...-+++-|+||||||...
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 445543455677899999999543
No 383
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=59.20 E-value=2.7 Score=35.54 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.2
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997654
No 384
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=59.17 E-value=2.7 Score=34.68 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|..+++.|+.|||||...-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 6789999999999997553
No 385
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=59.14 E-value=5.6 Score=34.36 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCceehhHHHHHHhhC
Q psy11867 143 HNMIAQSQSGTGKTAAFTLTMLSRVN 168 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~l~il~~l~ 168 (399)
-++++.++.|+|||...+--+.....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 47999999999999876654444443
No 386
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=58.76 E-value=2.8 Score=34.63 Aligned_cols=16 Identities=31% Similarity=0.572 Sum_probs=13.4
Q ss_pred cEEEEccCCCCceehh
Q psy11867 144 NMIAQSQSGTGKTAAF 159 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~ 159 (399)
.+.+.||+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999754
No 387
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=58.70 E-value=13 Score=37.55 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=47.6
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhhhccCCcEEEeCchhHHHhhhccccccCCceeEEE
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFV 251 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~lV 251 (399)
.+.++||.++|++-+.++++.+++. ++.+....++.......+...+|+|+|. +.. ..+++. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~er~~~~~~VLVATd--Vae-----rGIDId-V~~VI 461 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSVIPTIGDVVVVATD--ALM-----TGYTGD-FDSVI 461 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGGSCSSSCEEEEECT--THH-----HHCCCC-BSEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHhCCCcEEEECC--hHH-----ccCCCC-CcEEE
Confidence 4567999999999999999888764 4566777777665544455668999995 333 244554 77766
No 388
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=58.66 E-value=2.7 Score=35.33 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+.-+.+.|++|||||...
T Consensus 21 ~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 677889999999999654
No 389
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=58.63 E-value=2.8 Score=35.18 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.-+++.|+.|||||...-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 5778999999999997653
No 390
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=58.58 E-value=5.9 Score=37.93 Aligned_cols=39 Identities=18% Similarity=0.026 Sum_probs=25.4
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
+|.-+++.|++|+|||...+--+...... .+..+++++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEC
Confidence 47888999999999996554433333322 1334777764
No 391
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=58.54 E-value=2.8 Score=35.46 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.2
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997654
No 392
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=58.48 E-value=3.8 Score=38.00 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=17.3
Q ss_pred hhhhcCCCCcEEEEccCCCCceehh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
..++.+...-+++-|+||||||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 3445643456677899999999543
No 393
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=58.33 E-value=3.8 Score=37.89 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=17.0
Q ss_pred hhhhcCCCCcEEEEccCCCCceehh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
..++.+...-+++-|+||||||...
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 3445543445677889999999653
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=58.22 E-value=3.3 Score=36.42 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|..+++.|++|||||...-
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6899999999999997653
No 395
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=58.04 E-value=3.9 Score=38.19 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=17.2
Q ss_pred hhhhhcCCCCcEEEEccCCCCceeh
Q psy11867 134 LPTLLADPPHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 134 i~~ll~~~g~~vi~~a~TGsGKT~~ 158 (399)
+..++.+...-+++-|+||||||..
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceE
Confidence 3444564345667789999999954
No 396
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=58.03 E-value=3 Score=40.46 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=29.3
Q ss_pred cccccCCCCHHHHHHHHHc--CCCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 103 KTFEALHLKPELLKGVYEM--GFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~--g~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+|+++.=.+...+.+... .+..|..++ .+-...++.+++.||+|+|||+.+
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~-----~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFN-----RIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHH-----TTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHh-----hcCCCCCCeEEEECCCCCCHHHHH
Confidence 3577776555555555442 112222211 111112577999999999999765
No 397
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=57.94 E-value=9.9 Score=33.65 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=37.6
Q ss_pred HHHHhccCCCCcEEEEecchHhHHHHHHHHHHCCC-eEEEEcCCCCHHH
Q psy11867 335 VSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGL-NVGLLSGELTVEQ 382 (399)
Q Consensus 335 l~~ll~~~~~~k~IIF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~~~~ 382 (399)
+...+......++++||.+-..|...+..|...|+ +|..+.||+..-.
T Consensus 172 l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~ 220 (265)
T 4f67_A 172 VQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNYL 220 (265)
T ss_dssp HHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHH
T ss_pred HHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHHHH
Confidence 33334334557899999999999999999999998 6999999976543
No 398
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=57.94 E-value=3.9 Score=37.99 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=17.1
Q ss_pred hhhhcCCCCcEEEEccCCCCceehh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
..++.+...-+++-|+||||||...
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 3445543445677889999999653
No 399
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=57.90 E-value=3.2 Score=34.85 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|.-+++.|+.|||||...-
T Consensus 10 ~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp SCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 6789999999999997653
No 400
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=57.65 E-value=18 Score=29.51 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=39.9
Q ss_pred CcEEEEecc--------------hHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 345 GQAMIFCHT--------------RKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 345 ~k~IIF~~s--------------~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
+.+|||.|. ...++.|.+.|+.+|+.| .+|.+++.++-...++.|.+
T Consensus 34 G~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 34 GLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp EEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred eEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 568888775 237899999999999987 56789999999999999976
No 401
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=57.64 E-value=4 Score=37.94 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=18.1
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..++.+...-+++-|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 344556643345677899999999653
No 402
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=57.64 E-value=4 Score=37.50 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=18.4
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..++.+...-+++-|+||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 445556643445677899999999543
No 403
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=57.52 E-value=6.2 Score=31.68 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=30.3
Q ss_pred CCcEEEEecch---------HhHHHHHHHHHHCCCeEEEEcCCCC
Q psy11867 344 IGQAMIFCHTR---------KTAAWLAEKMSKEGLNVGLLSGELT 379 (399)
Q Consensus 344 ~~k~IIF~~s~---------~~a~~l~~~L~~~g~~v~~lhg~~~ 379 (399)
..++||||.+- ..+..++..|...|+++..|.||+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 36899999887 3578889999999999999999953
No 404
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.51 E-value=2.5 Score=37.08 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|++|||||...-
T Consensus 32 ~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp CEEEEEESCGGGTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 6789999999999997543
No 405
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=57.51 E-value=3.3 Score=34.78 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|.-+++.|+.|||||...-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 6889999999999997654
No 406
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=57.49 E-value=3.1 Score=35.39 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+.+.|++|||||...-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999997553
No 407
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=57.22 E-value=23 Score=31.33 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=40.2
Q ss_pred CcEEEEecc-------------hHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 345 GQAMIFCHT-------------RKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 345 ~k~IIF~~s-------------~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
+-+|||.|. ...++.|++.|+.+|+.|. ++.+++..+-.+++++|..-
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 457777764 6789999999999999975 56789999999999999753
No 408
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=57.13 E-value=3 Score=34.29 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.1
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.|+.|||||...-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997553
No 409
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=57.06 E-value=4.1 Score=37.88 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=17.4
Q ss_pred hhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 134 LPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 134 i~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
+..++.+..--+++-|+||||||...
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 44456643345677789999999553
No 410
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=57.05 E-value=3.3 Score=33.45 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCceehhH
Q psy11867 143 HNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~~ 160 (399)
+.+++.|+.|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999997653
No 411
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=56.95 E-value=3.5 Score=48.59 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=20.2
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..+++. +++++++||||+|||+..
T Consensus 1259 ll~~~l~~-~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1259 IFYDLLNS-KRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHH-TCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHC-CCeEEEECCCCCCHHHHH
Confidence 34444544 799999999999999754
No 412
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=56.81 E-value=8.2 Score=32.58 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=28.6
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHH
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRL 384 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~ 384 (399)
...++||.|+++.-+.++++.+... +..+..++|+.+..++.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 126 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA 126 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC--------
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH
Confidence 3468999999999999999888763 67889999987765543
No 413
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=56.60 E-value=3.6 Score=39.00 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=16.3
Q ss_pred hhhcCCCCcEEEEccCCCCceehh
Q psy11867 136 TLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 136 ~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.++.+...-+++-|+||||||...
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHhcCCceeEEeecCCCCCCCeEe
Confidence 345543345677889999999653
No 414
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=56.60 E-value=21 Score=28.34 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=38.7
Q ss_pred CcEEEEec--------------chHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 345 GQAMIFCH--------------TRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 345 ~k~IIF~~--------------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
+.+|||.| +...++.|.+.|+.+|+.|. +|.+++..+-...++.|.+-
T Consensus 17 G~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred eEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHh
Confidence 45777766 44578999999999999965 56679999999999999753
No 415
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=56.55 E-value=3.9 Score=37.90 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=18.9
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..++.+..--+++-|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 566667743344577789999999654
No 416
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=56.53 E-value=3.5 Score=35.79 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.||+|||||..
T Consensus 31 Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCcHHHH
Confidence 78899999999999953
No 417
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.49 E-value=4.2 Score=39.89 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=25.3
Q ss_pred CceeEEEEechhhHhhc-CCchHHHHHHHHhCCCCCcEEEEEeeC
Q psy11867 245 SKIKVFVLDEADVMIAT-QGHQDFSIRIQKRLPSDCQIMLFSATY 288 (399)
Q Consensus 245 ~~~~~lViDEah~l~~~-~~~~~~~~~i~~~l~~~~q~l~~SAT~ 288 (399)
..-.+++|||+|.+... ++....+..++.. .+..+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 34569999999998542 1222334444443 355677777764
No 418
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=56.26 E-value=3.2 Score=36.17 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|+.|||||...-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 6789999999999997654
No 419
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=56.13 E-value=14 Score=31.52 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=31.9
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
...++||.|+++.-+.++++.+++. +..+..++|+...... .+.++.+..+|+|
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv 154 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVV 154 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEE
Confidence 3468999999999999999888764 5678888888654432 3344455555543
No 420
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.12 E-value=4.4 Score=38.37 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=18.9
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..++.+...-+++-|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 455667743445677889999999654
No 421
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=55.76 E-value=24 Score=31.41 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=40.2
Q ss_pred CcEEEEecc--------------hHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 345 GQAMIFCHT--------------RKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 345 ~k~IIF~~s--------------~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
+-+|||+|. ...++.|.+.|+.+|+.|. ++.+++.++-.+++++|..
T Consensus 22 g~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 22 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVST 82 (278)
T ss_dssp CEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred CEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 568998885 3689999999999999976 5678999999999999965
No 422
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=55.73 E-value=4.2 Score=38.09 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=17.4
Q ss_pred hhhhcCCCCcEEEEccCCCCceehh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
..++.+...-+++-|+||||||...
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 3456643456677899999999543
No 423
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=55.68 E-value=3.1 Score=34.19 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|+.|||||...-
T Consensus 6 ~~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3568999999999997653
No 424
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=55.62 E-value=3.6 Score=38.30 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=14.4
Q ss_pred CCc--EEEEccCCCCceehh
Q psy11867 142 PHN--MIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~--vi~~a~TGsGKT~~~ 159 (399)
|.| +++-|+||||||...
T Consensus 83 G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEE
Confidence 555 689999999999543
No 425
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=55.59 E-value=3.8 Score=35.61 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+..+++.|+.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 578999999999999654
No 426
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=55.48 E-value=3.6 Score=40.69 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCCceehhH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~ 160 (399)
+|..+++.+|+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 37899999999999996543
No 427
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=55.29 E-value=4 Score=34.63 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCCceehhHH
Q psy11867 142 PHNMIAQSQSGTGKTAAFTL 161 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~l 161 (399)
|.-+.+.+|+|+|||.....
T Consensus 25 G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 78899999999999965543
No 428
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=55.20 E-value=3.9 Score=38.09 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=17.2
Q ss_pred hhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 134 LPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 134 i~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
+..++.+...-+++-|+||||||...
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34445643345677889999999543
No 429
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=55.06 E-value=3.4 Score=34.96 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|..+++.|++|||||...
T Consensus 25 ~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 688999999999999654
No 430
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=54.61 E-value=4 Score=38.34 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=17.0
Q ss_pred hhhhcCCCCcEEEEccCCCCceehh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
..++.+...-+++-|+||||||...
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCCeEe
Confidence 3445543345677889999999654
No 431
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=54.51 E-value=4.3 Score=38.54 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=18.5
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..++.+...-+++-|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 445556643445677789999999653
No 432
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=54.45 E-value=4.2 Score=38.21 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=16.2
Q ss_pred hhhcCCCCcEEEEccCCCCceehh
Q psy11867 136 TLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 136 ~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.++.+...-+++-|+||||||...
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 345543345677899999999543
No 433
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=54.44 E-value=3.7 Score=33.02 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=14.1
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.++.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999997553
No 434
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=54.35 E-value=6 Score=38.02 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=25.4
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeC
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAP 181 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 181 (399)
+|.-+++.|++|+|||...+--+...... .+..++|++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEEC
Confidence 47889999999999996554433333221 1234777774
No 435
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=54.11 E-value=4 Score=35.73 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|..+.+.||+|||||...-
T Consensus 27 g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 6789999999999997543
No 436
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=54.05 E-value=6.9 Score=36.16 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=25.2
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCC-CC--CCCeEEEEeC
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNP-SI--QEPQVLCLAP 181 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~-~~--~~~~~lil~P 181 (399)
+|.-+.+.+|+|+|||......+...... .. .+..++++.-
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 37889999999999997654433322111 11 1246777764
No 437
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=53.95 E-value=3.7 Score=33.61 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.2
Q ss_pred cEEEEccCCCCceehh
Q psy11867 144 NMIAQSQSGTGKTAAF 159 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~ 159 (399)
-.++.+++|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678899999999654
No 438
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=53.93 E-value=21 Score=36.88 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=49.6
Q ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhc------cCCCcEEEEEEcCchhhhhh------------ccCCcEEEeCchhHH
Q psy11867 172 QEPQVLCLAPTYELAIQIGEVVAKMGK------HITDLSVRYAVRGENLERNK------------KITEQIIIGTPGKVL 233 (399)
Q Consensus 172 ~~~~~lil~Pt~~La~Q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~IlV~Tp~~l~ 233 (399)
....+||.+|++.-+..+++.++.... ...++.+...+++.....+. .+...|||||. +.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~--ia 379 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN--IA 379 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT--HH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc--HH
Confidence 356899999999999999988876322 22467777777775433221 22347999995 33
Q ss_pred HhhhccccccCCceeEEEE
Q psy11867 234 DWGLKYRFFDLSKIKVFVL 252 (399)
Q Consensus 234 ~~~~~~~~~~~~~~~~lVi 252 (399)
. ..+++..+++||-
T Consensus 380 e-----~GidIp~v~~VId 393 (773)
T 2xau_A 380 E-----TSLTIDGIVYVVD 393 (773)
T ss_dssp H-----HTCCCTTEEEEEE
T ss_pred H-----hCcCcCCeEEEEe
Confidence 3 3567778887764
No 439
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=53.74 E-value=15 Score=33.55 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHhccCC--CCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHH
Q psy11867 328 IDEKFEAVSNIYGVVT--IGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVE 381 (399)
Q Consensus 328 ~~~k~~~l~~ll~~~~--~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~ 381 (399)
.+.|+..|..++.... +.+++||++..+..+.+-.++...|++..-+.|.....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~ 162 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS 162 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh
Confidence 3678888888876543 46999999999999999999999999999999985543
No 440
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=53.64 E-value=5.2 Score=36.27 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCCceehh
Q psy11867 141 PPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~ 159 (399)
+|.-+.+.||+|||||...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4789999999999999644
No 441
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=53.57 E-value=3.8 Score=34.85 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+..+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 5679999999999997653
No 442
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=53.55 E-value=3.7 Score=36.11 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.-++++|++|||||...-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 4678999999999997653
No 443
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=53.44 E-value=3.9 Score=32.65 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=13.2
Q ss_pred CcEEEEccCCCCceehh
Q psy11867 143 HNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 143 ~~vi~~a~TGsGKT~~~ 159 (399)
.-.++.+|+|+|||...
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34577899999999653
No 444
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=53.33 E-value=5.7 Score=37.19 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=19.0
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..++.+..--+++-|+||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 456667753445677789999999543
No 445
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=53.30 E-value=3.9 Score=38.22 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=17.8
Q ss_pred HhhhhhcCCCCcEEEEccCCCCceehh
Q psy11867 133 ALPTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 133 ai~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
.+..++.+...-+++-|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 344556643345677789999999553
No 446
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=53.26 E-value=27 Score=30.41 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=39.6
Q ss_pred CcEEEEec--------------chHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 345 GQAMIFCH--------------TRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 345 ~k~IIF~~--------------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
+-+|||.| +...++.|++.|+.+|+.|. ++.+++..+-.+++++|.+.
T Consensus 17 g~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred cEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 34777776 33589999999999999975 66789999999999999764
No 447
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=53.18 E-value=3.8 Score=34.22 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.6
Q ss_pred cEEEEccCCCCceehh
Q psy11867 144 NMIAQSQSGTGKTAAF 159 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~ 159 (399)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999754
No 448
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=53.14 E-value=14 Score=32.64 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=31.1
Q ss_pred CCCcEEEEecchHh-HHHHHHHHHHCCC-eEEEEcCCCCH
Q psy11867 343 TIGQAMIFCHTRKT-AAWLAEKMSKEGL-NVGLLSGELTV 380 (399)
Q Consensus 343 ~~~k~IIF~~s~~~-a~~l~~~L~~~g~-~v~~lhg~~~~ 380 (399)
...++||||.+-.. +..++..|...|+ +|..|.||+..
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~ 124 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAG 124 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 34689999998655 8888999999999 69999998644
No 449
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=53.01 E-value=3.8 Score=38.20 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.6
Q ss_pred cEEEEccCCCCceehh
Q psy11867 144 NMIAQSQSGTGKTAAF 159 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~ 159 (399)
-.++.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999765
No 450
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=52.86 E-value=12 Score=40.10 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=45.0
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC----CC----eEEEEcCCCCHHHHHHHHHHHhcCCCcccC
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE----GL----NVGLLSGELTVEQRLSILDRFREGEFKIYS 399 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~----g~----~v~~lhg~~~~~~R~~v~~~F~~G~~~ILV 399 (399)
..++||.++++.-|.++++.++.. +. .+..+||+.+..++....+.+++ .+|+|
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV 160 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVI 160 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEE
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEE
Confidence 468999999999999999888754 55 89999999999998888887776 66654
No 451
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=52.68 E-value=7.2 Score=32.33 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=21.2
Q ss_pred EEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHH
Q psy11867 145 MIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYE 184 (399)
Q Consensus 145 vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 184 (399)
+++.|++|||||.-+.- +. .. +..++|+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~-la---~~---~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-LI---GD---APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHH-HH---CS---CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHH-HH---hc---CCCeEEEecCCC
Confidence 68899999999954332 22 11 234788887543
No 452
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=52.58 E-value=23 Score=32.46 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=36.3
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHHHHH
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRLSIL 387 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~~v~ 387 (399)
...++||.|+++.-+.+.++.+.+. +..+..++|+....++...+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 136 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 136 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc
Confidence 3468999999999999988887653 67899999999887665543
No 453
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=52.38 E-value=4 Score=34.19 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.5
Q ss_pred cEEEEccCCCCceehh
Q psy11867 144 NMIAQSQSGTGKTAAF 159 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~ 159 (399)
.+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999754
No 454
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=52.27 E-value=23 Score=29.12 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=34.0
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC--CCeEEEEcCCCCHHHHHH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE--GLNVGLLSGELTVEQRLS 385 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~~R~~ 385 (399)
..++||.|+++.-+..+++.+.+. +.++..++|+....++..
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKE 115 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHH
Confidence 468999999999999999999876 467889999887655433
No 455
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=52.18 E-value=5.5 Score=38.21 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=17.1
Q ss_pred hhhhcCCCCcEEEEccCCCCceehh
Q psy11867 135 PTLLADPPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 135 ~~ll~~~g~~vi~~a~TGsGKT~~~ 159 (399)
..++.+...-+++-|+||||||...
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445643445677889999999553
No 456
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=52.16 E-value=4.1 Score=34.44 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=14.1
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 457
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=52.11 E-value=5.8 Score=33.08 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+.+.+++|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 356889999999999754
No 458
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=51.83 E-value=4.6 Score=35.04 Aligned_cols=17 Identities=24% Similarity=0.265 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.||+|||||..
T Consensus 31 Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 78899999999999963
No 459
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=51.82 E-value=4.2 Score=33.72 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=13.9
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.|+.|||||...-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999997543
No 460
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=51.32 E-value=7.4 Score=30.17 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=28.6
Q ss_pred CcEEEEecchHh---------HHHHHHHHHHCCCeEEEEcCCCC
Q psy11867 345 GQAMIFCHTRKT---------AAWLAEKMSKEGLNVGLLSGELT 379 (399)
Q Consensus 345 ~k~IIF~~s~~~---------a~~l~~~L~~~g~~v~~lhg~~~ 379 (399)
.++||||.+-.. +.+++..|...|+++..+.||+.
T Consensus 84 ~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 84 KEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp SCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 579999988654 35788889999999999999954
No 461
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=50.77 E-value=5.2 Score=34.16 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.||.|||||..
T Consensus 35 Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TCCEEEECCTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 78899999999999964
No 462
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=50.77 E-value=4.4 Score=33.30 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.8
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999997543
No 463
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=50.74 E-value=8.2 Score=37.58 Aligned_cols=50 Identities=14% Similarity=-0.013 Sum_probs=30.3
Q ss_pred CCCcEEEEccCCCCceehhHHHHHHhhCCCCCCCeEEEEeCcHHHHHHHHHHH
Q psy11867 141 PPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVV 193 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~ 193 (399)
+|.-+++.|++|+|||...+--+...... .+..+++++-- +-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEecc-CCHHHHHHHH
Confidence 37889999999999997655444444332 13357777642 2234444443
No 464
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=50.58 E-value=4.2 Score=42.33 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCCceehh
Q psy11867 141 PPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~ 159 (399)
+++.+++.||+|+|||+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4789999999999999654
No 465
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=50.52 E-value=35 Score=29.81 Aligned_cols=55 Identities=5% Similarity=0.068 Sum_probs=38.7
Q ss_pred CcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCHHHHH-HHHHHHh--cCCCcccC
Q psy11867 345 GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRL-SILDRFR--EGEFKIYS 399 (399)
Q Consensus 345 ~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~-~v~~~F~--~G~~~ILV 399 (399)
.++++.-.+.+.++.+++.+...|.++..+..+++..+-. +.++... -|.++|||
T Consensus 32 a~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLV 89 (254)
T 4fn4_A 32 SIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLC 89 (254)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4666666777788899999988888999999988765432 2222222 17888876
No 466
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=50.30 E-value=5.7 Score=33.47 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=22.9
Q ss_pred eeEEEEechhhHhhcCCchHHHHHHHHhC----CCCCcEEEEEee
Q psy11867 247 IKVFVLDEADVMIATQGHQDFSIRIQKRL----PSDCQIMLFSAT 287 (399)
Q Consensus 247 ~~~lViDEah~l~~~~~~~~~~~~i~~~l----~~~~q~l~~SAT 287 (399)
-.++||||||.+...........+++..+ ....++++++..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 45899999999853211110011233333 345578887776
No 467
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=50.24 E-value=25 Score=33.28 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=37.1
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhh---hhhccCCcEEEeCc
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE---RNKKITEQIIIGTP 229 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~IlV~Tp 229 (399)
+.++||++|+++-+..+++.+++. +..+....|+.... .-..+..+|+|||-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 457999999999999999988876 44556666653221 11245678999995
No 468
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=50.11 E-value=20 Score=31.67 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.4
Q ss_pred CCCcEEEEecchHhHHHHHHHHH-HCCC-eEEEEcCCCC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMS-KEGL-NVGLLSGELT 379 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~-~~g~-~v~~lhg~~~ 379 (399)
...++|+||.+-..+...+..|. ..|+ ++..|.|++.
T Consensus 232 ~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 232 KDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 34679999999888888899998 8898 6999999964
No 469
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=50.07 E-value=4.9 Score=41.64 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCCceehh
Q psy11867 141 PPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~ 159 (399)
+++.+++.||+|+|||+.+
T Consensus 237 ~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4789999999999999754
No 470
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=49.93 E-value=4.7 Score=33.29 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=13.4
Q ss_pred EEEEccCCCCceehhH
Q psy11867 145 MIAQSQSGTGKTAAFT 160 (399)
Q Consensus 145 vi~~a~TGsGKT~~~~ 160 (399)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997654
No 471
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=49.90 E-value=4.9 Score=34.53 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.||+|||||..
T Consensus 30 Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TCEEEEEECTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 78888999999999953
No 472
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=49.70 E-value=5 Score=39.19 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=28.9
Q ss_pred cccccCCCCHHHHHHHHHcC--CCCChHHHHHHhhhhhcCCCCcEEEEccCCCCceehhH
Q psy11867 103 KTFEALHLKPELLKGVYEMG--FYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 103 ~~f~~~~l~~~l~~~l~~~g--~~~p~~iQ~~ai~~ll~~~g~~vi~~a~TGsGKT~~~~ 160 (399)
.+|+++.-.+.....+...- +..| ..+..+-...++.+++.+|+|+|||+.+-
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~-----~~~~~lg~~ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCG-----GGTTTTSCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhch-----hhhhhccCCCCceEEEECCCCCCHHHHHH
Confidence 35777755556655555421 1111 11111111124669999999999997543
No 473
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=49.69 E-value=17 Score=31.08 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=32.8
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCCeEEEEcCCCCH
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTV 380 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 380 (399)
...++|+||.+-..+...+..|...|.++..|.|++..
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~~ 220 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHE 220 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHHH
Confidence 34689999999999999999999999889999999654
No 474
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=49.50 E-value=24 Score=36.52 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=31.2
Q ss_pred CCcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHH
Q psy11867 344 IGQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRL 384 (399)
Q Consensus 344 ~~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~ 384 (399)
.+++||.|+++.-+.+.+..+.+. ++.+..+||+.+...+.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 340 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSV 340 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhH
Confidence 578999999999999988887765 89999999998766543
No 475
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=49.46 E-value=5.3 Score=34.42 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.+|+|+|||..
T Consensus 34 Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 78899999999999964
No 476
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=49.43 E-value=5.3 Score=34.92 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.||+|||||..
T Consensus 35 Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 78899999999999964
No 477
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=49.26 E-value=5.4 Score=35.20 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCCCceeh
Q psy11867 141 PPHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~ 158 (399)
+|.-+.+.+|+|||||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 378899999999999964
No 478
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=49.24 E-value=5.3 Score=36.21 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCCCceehh
Q psy11867 141 PPHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 141 ~g~~vi~~a~TGsGKT~~~ 159 (399)
+|.-+.+.+|+|+|||...
T Consensus 101 ~g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3678889999999999654
No 479
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=49.24 E-value=23 Score=30.43 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=32.4
Q ss_pred CcEEEEecchHhHHHHHHHHHHC----CCeEEEEcCCCCHHHHH
Q psy11867 345 GQAMIFCHTRKTAAWLAEKMSKE----GLNVGLLSGELTVEQRL 384 (399)
Q Consensus 345 ~k~IIF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~~R~ 384 (399)
.++||.|+++.-+.++++.+.+. +..+..++|+....+..
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI 144 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH
Confidence 58999999999999998887664 56788899988765543
No 480
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=49.17 E-value=4.6 Score=33.81 Aligned_cols=18 Identities=22% Similarity=0.082 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
+.-+.+.|++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567889999999999754
No 481
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=49.06 E-value=30 Score=30.72 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=33.9
Q ss_pred hHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 354 RKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 354 ~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
...++.|.+.|+.+|+.| .++.+++..+-..++++|..-
T Consensus 68 ~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 68 DVDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhh
Confidence 457999999999999997 467789999999999999863
No 482
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=49.06 E-value=4.8 Score=33.40 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
...+.+.+++|||||...-
T Consensus 8 ~~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp CEEEEEEECTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999997653
No 483
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=48.86 E-value=5.5 Score=35.49 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.||+|||||..
T Consensus 34 Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TSEEEEECCTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 78889999999999964
No 484
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=48.64 E-value=26 Score=30.76 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhccCCCCcEEEEecc-hHhHHHHHHHHHHCCC-eEEEEcCCC
Q psy11867 329 DEKFEAVSNIYGVVTIGQAMIFCHT-RKTAAWLAEKMSKEGL-NVGLLSGEL 378 (399)
Q Consensus 329 ~~k~~~l~~ll~~~~~~k~IIF~~s-~~~a~~l~~~L~~~g~-~v~~lhg~~ 378 (399)
...+.....-+......+++|||.+ ...+..++..|...|+ +|..+.||+
T Consensus 62 ~~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 62 AQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp HHHHHHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
No 485
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=48.59 E-value=28 Score=30.89 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=39.6
Q ss_pred CcEEEEecc--------------hHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy11867 345 GQAMIFCHT--------------RKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFRE 392 (399)
Q Consensus 345 ~k~IIF~~s--------------~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~ 392 (399)
+-+|||+|. ...++.|.+.|+.+|+.|. +|.+++.++-.+++++|..
T Consensus 22 g~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 22 GHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE-VKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EEcCCCHHHHHHHHHHHHH
Confidence 567888776 2489999999999999874 5779999999999999964
No 486
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=48.56 E-value=13 Score=33.90 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=13.4
Q ss_pred cEEEEccCCCCceehh
Q psy11867 144 NMIAQSQSGTGKTAAF 159 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~ 159 (399)
-+-+.||+|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999754
No 487
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=48.54 E-value=40 Score=34.10 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=44.1
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhh---hhhccCCcEEEeCchhHHHhhhccccccCCceeE
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLE---RNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKV 249 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~IlV~Tp~~l~~~~~~~~~~~~~~~~~ 249 (399)
+.++||+||+++-+..+++.+++. ++.+....+..... .-..+..+|+|||-- +. ..+++. +++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv--~e-----~GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTDI--SE-----MGANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSSHHHHGGGGGTCCCSEEEECGG--GG-----TTCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHHHHHHHHHHHCCCceEEEECch--hh-----cceeeC-CcE
Confidence 467999999999999988888765 45566666643221 112456689999952 22 356666 767
Q ss_pred EE
Q psy11867 250 FV 251 (399)
Q Consensus 250 lV 251 (399)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 488
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=48.42 E-value=16 Score=31.98 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=31.7
Q ss_pred CCCcEEEEecchHhHHHHHHHHHHCCC-eEEEEcCCCC
Q psy11867 343 TIGQAMIFCHTRKTAAWLAEKMSKEGL-NVGLLSGELT 379 (399)
Q Consensus 343 ~~~k~IIF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~ 379 (399)
...++|+||.+-..+...+..|...|+ +|..|.|++.
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 346899999998888899999999999 5999999864
No 489
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=48.34 E-value=76 Score=30.38 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=47.4
Q ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCCcEEEEEEcCchhhhh-------hccCCcEEEeCchhHHHhhhccccccCC
Q psy11867 173 EPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERN-------KKITEQIIIGTPGKVLDWGLKYRFFDLS 245 (399)
Q Consensus 173 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~Tp~~l~~~~~~~~~~~~~ 245 (399)
+...++++....-+..+.+.+...+ ..+....|+...... ..+..+|+|||+..+- ..+++.
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~-----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~------~GiDip 415 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEY-----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS------TGISVK 415 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTC-----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH------HSCCCC
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcC-----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh------cccccc
Confidence 3455666666666666666666542 255666666543221 1456689999977553 356888
Q ss_pred ceeEEEEechhh
Q psy11867 246 KIKVFVLDEADV 257 (399)
Q Consensus 246 ~~~~lViDEah~ 257 (399)
+++++|+..+..
T Consensus 416 ~v~~vi~~~~~~ 427 (510)
T 2oca_A 416 NLHHVVLAHGVK 427 (510)
T ss_dssp SEEEEEESSCCC
T ss_pred cCcEEEEeCCCC
Confidence 999999988763
No 490
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=48.02 E-value=5.7 Score=35.18 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.||+|||||..
T Consensus 37 Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TCEEEEECCTTSCHHHH
T ss_pred CCEEEEECCCCCcHHHH
Confidence 78889999999999964
No 491
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=48.00 E-value=5.1 Score=34.91 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.+|+|||||..
T Consensus 28 Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TEEEEEECCTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 78899999999999964
No 492
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=47.86 E-value=5.2 Score=33.85 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
+.-+.+.|+.|||||...-
T Consensus 4 ~~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578899999999997543
No 493
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=47.66 E-value=10 Score=34.25 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
++-+++.+++|+|||....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 5678899999999996543
No 494
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=47.65 E-value=6.7 Score=32.41 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCCceehhH
Q psy11867 142 PHNMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~~ 160 (399)
|+-+++.+++|+|||..++
T Consensus 16 G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TEEEEEEESSSSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 7899999999999995543
No 495
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=47.52 E-value=23 Score=30.92 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=30.6
Q ss_pred CCCcEEEEecchH-hHHHHHHHHHHCCC-eEEEEcCCCCH
Q psy11867 343 TIGQAMIFCHTRK-TAAWLAEKMSKEGL-NVGLLSGELTV 380 (399)
Q Consensus 343 ~~~k~IIF~~s~~-~a~~l~~~L~~~g~-~v~~lhg~~~~ 380 (399)
...+++|||.+-. .+..++..|...|+ +|..+.||+..
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~ 119 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTA 119 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 3467999998765 78888999999999 58899998543
No 496
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=47.45 E-value=5.3 Score=34.10 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.1
Q ss_pred cEEEEccCCCCceehhH
Q psy11867 144 NMIAQSQSGTGKTAAFT 160 (399)
Q Consensus 144 ~vi~~a~TGsGKT~~~~ 160 (399)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997654
No 497
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=47.41 E-value=26 Score=28.69 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=38.4
Q ss_pred CcEEEEecc--------------hHhHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy11867 345 GQAMIFCHT--------------RKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREG 393 (399)
Q Consensus 345 ~k~IIF~~s--------------~~~a~~l~~~L~~~g~~v~~lhg~~~~~~R~~v~~~F~~G 393 (399)
+.+|||.|. ...++.|.+.|..+|+.| .+|.+++..+-...++.|...
T Consensus 45 G~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V-~v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 45 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDV-IVYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred eEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHHh
Confidence 457777663 367899999999999988 455689999999999999754
No 498
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=47.30 E-value=6 Score=34.78 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.||+|||||..
T Consensus 33 Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 78889999999999963
No 499
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.21 E-value=6.1 Score=34.35 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCceeh
Q psy11867 142 PHNMIAQSQSGTGKTAA 158 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~ 158 (399)
|.-+.+.+|+|+|||..
T Consensus 32 Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 78889999999999964
No 500
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=47.14 E-value=5.2 Score=36.18 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCceehh
Q psy11867 142 PHNMIAQSQSGTGKTAAF 159 (399)
Q Consensus 142 g~~vi~~a~TGsGKT~~~ 159 (399)
|.-+.+.||+|+|||...
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 678889999999999754
Done!