RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11867
(399 letters)
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 139 bits (350), Expect = 8e-40
Identities = 74/212 (34%), Positives = 122/212 (57%), Gaps = 7/212 (3%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTL 161
V +F+ ++L LL+G+Y GF PS IQ+ A+ + +++IAQ+QSGTGKTA F +
Sbjct: 11 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKG--YDVIAQAQSGTGKTATFAI 68
Query: 162 TMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKI- 220
++L ++ ++ Q L LAPT ELA QI +VV +G ++ +K+
Sbjct: 69 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 128
Query: 221 --TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSD 278
II+GTPG+ + L R+ IK+FVLDEAD + ++G +D I ++L S+
Sbjct: 129 MEAPHIIVGTPGR-VFDMLNRRYLSPKYIKMFVLDEAD-EMLSRGFKDQIYDIFQKLNSN 186
Query: 279 CQIMLFSATYDKEVMEFAQDMVPNPLIIKLKR 310
Q++L SAT +V+E + + +P+ I +K+
Sbjct: 187 TQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 218
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 138 bits (349), Expect = 1e-39
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 3/206 (1%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
F L+L +L + GF P+ IQ +P L D +N++AQ+++G+GKTA+F + +
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDE-YNIVAQARTGSGKTASFAIPL 63
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQ 223
+ VN + ++ E+ + G ++ Y + +
Sbjct: 64 IELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNAN 123
Query: 224 IIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIML 283
I++GTPG++LD + +L +K F+LDEAD M+ G +I D +I+L
Sbjct: 124 IVVGTPGRILDH-INRGTLNLKNVKYFILDEADEML-NMGFIKDVEKILNACNKDKRILL 181
Query: 284 FSATYDKEVMEFAQDMVPNPLIIKLK 309
FSAT +E++ A+ + + IK K
Sbjct: 182 FSATMPREILNLAKKYMGDYSFIKAK 207
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 131 bits (331), Expect = 4e-37
Identities = 76/206 (36%), Positives = 120/206 (58%), Gaps = 5/206 (2%)
Query: 102 VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTL 161
V F+ + L LL+GV+ GF PS IQ+ A+ ++ H+++AQ+QSGTGKT F++
Sbjct: 9 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSI 66
Query: 162 TMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221
L R++ S++ PQ L LAPT ELA+QI +VV + H+ +E + +
Sbjct: 67 AALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 126
Query: 222 E-QIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280
+ QI++GTPG+V ++ R F KIK+F+LDEAD + + G ++ +I LP Q
Sbjct: 127 DAQIVVGTPGRV-FDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQIYQIFTLLPPTTQ 184
Query: 281 IMLFSATYDKEVMEFAQDMVPNPLII 306
++L SAT +V+E + NP+ I
Sbjct: 185 VVLLSATMPNDVLEVTTKFMRNPVRI 210
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 130 bits (327), Expect = 2e-36
Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 6/212 (2%)
Query: 101 SVKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT 160
TF+ + L+ +LL+G+Y GF PS IQ+ A+ ++ ++IAQSQSGTGKTA F+
Sbjct: 15 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFS 72
Query: 161 LTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKH--ITDLSVRYAVRGENLERNK 218
+++L ++ ++E Q L LAPT ELA+QI + + +G + + + R
Sbjct: 73 ISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 132
Query: 219 KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSD 278
+ ++ GTPG+V D + R IK+ VLDEAD + +G ++ + + LP
Sbjct: 133 DYGQHVVAGTPGRVFDMI-RRRSLRTRAIKMLVLDEAD-EMLNKGFKEQIYDVYRYLPPA 190
Query: 279 CQIMLFSATYDKEVMEFAQDMVPNPLIIKLKR 310
Q++L SAT E++E + +P+ I +KR
Sbjct: 191 TQVVLISATLPHEILEMTNKFMTDPIRILVKR 222
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 124 bits (311), Expect = 3e-34
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 7/207 (3%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
F LKPELL+ + + GF PS++Q +P + +++ Q++SG GKTA F L
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLAT 59
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD----LSVRYAVRGENLERNKK 219
L ++ P + VL + T ELA QI + + K++ + + ++ E KK
Sbjct: 60 LQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 119
Query: 220 ITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279
I++GTPG++L + + +L IK F+LDE D M+ + I + P +
Sbjct: 120 NCPHIVVGTPGRILALA-RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK 178
Query: 280 QIMLFSATYDKEVMEFAQDMVPNPLII 306
Q+M+FSAT KE+ + + +P+ I
Sbjct: 179 QVMMFSATLSKEIRPVCRKFMQDPMEI 205
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 115 bits (288), Expect = 5e-31
Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 8/208 (3%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
TFE +LK ELL G++E GF PS IQE A+P + +++A++++GTGKTAAF +
Sbjct: 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPT 59
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRY---AVRGENLERNKKI 220
L +V P + + Q L + PT E V + +S +
Sbjct: 60 LEKVKPKLNKIQALIMVPTRE-LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 118
Query: 221 TEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQ 280
T I++GTPG+V + DLS +F++DEAD M++ +I LP Q
Sbjct: 119 TVHILVGTPGRV-LDLASRKVADLSDCSLFIMDEADKMLSRDFKTII-EQILSFLPPTHQ 176
Query: 281 IMLFSATYDKEVMEFAQDMVPNPLIIKL 308
+LFSAT+ V EF + P I L
Sbjct: 177 SLLFSATFPLTVKEFMVKHLHKPYEINL 204
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 115 bits (287), Expect = 7e-31
Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 103 KTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLT 162
FE LK ELL G++EMG+ PS IQE ++P L+ +++A++++GTGK+ A+ +
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIP 60
Query: 163 MLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNK---K 219
+L R++ Q + + PT ELA+Q+ ++ ++ KH+ V G NL +
Sbjct: 61 LLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 120
Query: 220 ITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDC 279
T ++I TPG+ + +K + +++ VLDEAD +++ Q I LP +
Sbjct: 121 DTVHVVIATPGR-ILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIME-DIILTLPKNR 178
Query: 280 QIMLFSATYDKEVMEFAQDMVPNPLII 306
QI+L+SAT+ V +F + P I
Sbjct: 179 QILLYSATFPLSVQKFMNSHLEKPYEI 205
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 111 bits (279), Expect = 3e-29
Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 18/235 (7%)
Query: 87 ELEIQRKDPHSPLYS-VKTFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNM 145
+ + P + ++ F+ L L P + + + P+ IQ+ A+P +L ++
Sbjct: 4 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEH--RDI 61
Query: 146 IAQSQSGTGKTAAFTLTMLSRV---------NPSIQEPQVLCLAPTYELAIQIGEVVAKM 196
+A +Q+G+GKTAAF + +++ + P+ L LAPT ELAIQI K
Sbjct: 62 MACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 121
Query: 197 GKH--ITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDE 254
+ + V + R ++ +++ TP L ++ L K VLDE
Sbjct: 122 SLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATP-GRLVDFIEKNKISLEFCKYIVLDE 180
Query: 255 ADVMIATQGHQDFSI---RIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLII 306
AD M+ + Q ++FSAT+ KE+ + A D + N + +
Sbjct: 181 ADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 235
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 97.4 bits (241), Expect = 2e-24
Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 8/209 (3%)
Query: 104 TFEALHLKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTM 163
F +P +++ + + FY P++IQE +P L +M+ QSQ+GTGKT A+ L +
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRG--ESMVGQSQTGTGKTHAYLLPI 59
Query: 164 LSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQ 223
+ ++ P E Q + APT ELA QI K+ K + A +K E+
Sbjct: 60 MEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK 119
Query: 224 -----IIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSD 278
I+ ++ ++ + D+ + V+DEAD+M+ D +I R+P D
Sbjct: 120 LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVD-QIAARMPKD 178
Query: 279 CQIMLFSATYDKEVMEFAQDMVPNPLIIK 307
Q+++FSAT +++ F + + NP +
Sbjct: 179 LQMLVFSATIPEKLKPFLKKYMENPTFVH 207
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 99.6 bits (247), Expect = 3e-24
Identities = 32/253 (12%), Positives = 71/253 (28%), Gaps = 33/253 (13%)
Query: 144 NMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDL 203
I G GKT + ++ + + L LAPT +A ++ E + +
Sbjct: 11 LTIMDLHPGAGKTKRYLPAIVREAIK--RGLRTLILAPTRVVAAEMEEALRGLPIRY--- 65
Query: 204 SVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQG 263
+ + E + + + + ++DEA
Sbjct: 66 ------QTPAIRAEHTGREIVDLMCHATFTM--RLLSPIRVPNYNLIIMDEAHFTDP-AS 116
Query: 264 HQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKREEESLDNIKQHYV 323
+ + + +AT F Q P ++ +
Sbjct: 117 IAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAP--------------IMDEEREI 162
Query: 324 MCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQR 383
++ + E V++ G+ + F + K +A + K G V LS + +
Sbjct: 163 PERSWNSGHEWVTD-----FKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY 217
Query: 384 LSILDRFREGEFK 396
+ +
Sbjct: 218 IKTRTNDWDFVVT 230
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 81.5 bits (200), Expect = 2e-18
Identities = 28/201 (13%), Positives = 54/201 (26%), Gaps = 24/201 (11%)
Query: 112 PELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSI 171
+ + P IQ+ +L + A + +G GKT+ L
Sbjct: 30 LKEFVEFFRKCVGEPRAIQKMWAKRILRK--ESFAATAPTGVGKTSFGLAMSLFLAL--- 84
Query: 172 QEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGK 231
+ + + PT L IQ E + K + V E+ +
Sbjct: 85 KGKRCYVIFPTSLLVIQAAETIRKYAEK---AGVGTENLIGYYHGRIPKREKENFMQNLR 141
Query: 232 VLDW------GLKYRFFDLSKIKVFVLDEADVMIATQGHQDFS----------IRIQKRL 275
L + +L +D+ D ++ + D
Sbjct: 142 NFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVG 201
Query: 276 PSDCQIMLFSATYDKEVMEFA 296
+ +M+ +AT K
Sbjct: 202 EARGCLMVSTATAKKGKKAEL 222
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 74.3 bits (181), Expect = 4e-16
Identities = 30/212 (14%), Positives = 70/212 (33%), Gaps = 21/212 (9%)
Query: 104 TFEALHLKP---ELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFT 160
E L+L+ ++L+ + G+ QE + T+L+ + + +G GK+ +
Sbjct: 3 QAEVLNLESGAKQVLQETF--GYQQFRPGQEEIIDTVLSG--RDCLVVMPTGGGKSLCYQ 58
Query: 161 LTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVR--YAVRGENLERNK 218
+ L + ++P L + + G L+ + E + +
Sbjct: 59 IPALLLN------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR 112
Query: 219 KITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRL--- 275
+++ P +++ + +DEA + +L
Sbjct: 113 TGQIRLLYIAPERLMLDN-FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171
Query: 276 PSDCQIMLFSATYDKEVMEFAQDM--VPNPLI 305
M +AT D + + + +PLI
Sbjct: 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLI 203
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 73.1 bits (178), Expect = 1e-15
Identities = 36/198 (18%), Positives = 76/198 (38%), Gaps = 13/198 (6%)
Query: 104 TFEALH--LKPELLKGVYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTL 161
E L + + + E G Q A+ + + N++ + GK L
Sbjct: 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSG--KNLLLAMPTAAGK---TLL 56
Query: 162 TMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKIT 221
++ V +I+ + L + P LA + E K K + + G+ R++ +
Sbjct: 57 AEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIST---GDYESRDEHLG 113
Query: 222 EQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQDFS--IRIQKRLPSDC 279
+ II T + D ++ R + + V+DE ++ + + + +R+
Sbjct: 114 DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKAL 173
Query: 280 QIMLFSATYDKEVMEFAQ 297
+++ SAT V E A+
Sbjct: 174 RVIGLSATAP-NVTEIAE 190
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 67.1 bits (162), Expect = 1e-13
Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 7/204 (3%)
Query: 118 VYEMGFYAPSKIQETALPTLLADPPHNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVL 177
V P QE N + +G GKT + R+ +VL
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCKE---TNCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVL 56
Query: 178 CLAPTYELAIQIGEVVAKMGKHITDLSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGL 237
LAPT L +Q E ++ + V ER+K +I + ++ L
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDL 116
Query: 238 KYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQ 297
L + + V DEA + + R KR + ++ +A+ E
Sbjct: 117 LAGRISLEDVSLIVFDEAHRAVGNYAYVFI-AREYKRQAKNPLVIGLTASPGSTP-EKIM 174
Query: 298 DMVPNPLIIKLKREEESLDNIKQH 321
+++ N I ++ E+ +++ +
Sbjct: 175 EVINNLGIEHIEYRSENSPDVRPY 198
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 60.7 bits (146), Expect = 1e-11
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 318 IKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGE 377
IKQ YV + + K+E ++++Y +++ QA+IFC+TR+ L K+ + V + +
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 378 LTVEQRLSILDRFREGEFKI 397
L ++R +I+ FR G +I
Sbjct: 61 LPQQERDTIMKEFRSGSSRI 80
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 56.9 bits (136), Expect = 2e-10
Identities = 30/87 (34%), Positives = 54/87 (62%)
Query: 311 EEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLN 370
+E +L+ IKQ +V + + KF+ + ++Y +TI QA+IFC+T++ WL EKM +
Sbjct: 1 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 60
Query: 371 VGLLSGELTVEQRLSILDRFREGEFKI 397
V + G++ ++R SI+ FR G ++
Sbjct: 61 VSSMHGDMPQKERESIMKEFRSGASRV 87
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 54.2 bits (129), Expect = 2e-09
Identities = 47/85 (55%), Positives = 68/85 (80%)
Query: 314 SLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGL 373
+L+NI+Q+YV+C++ +K++A+ NIYG +TIGQA+IFC TR+ A WL +M ++G V L
Sbjct: 2 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSL 61
Query: 374 LSGELTVEQRLSILDRFREGEFKIY 398
LSGELTVEQR SI+ RFR+G+ K+
Sbjct: 62 LSGELTVEQRASIIQRFRDGKEKVL 86
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 46.5 bits (110), Expect = 3e-06
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 345 GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLS----------ILDRFREGE 394
G+ +IFCH++K LA K+ G+N L V + L G+
Sbjct: 37 GRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGD 96
Query: 395 FKI 397
F
Sbjct: 97 FDS 99
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 42.8 bits (99), Expect = 2e-05
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 318 IKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKM 364
++Q+YV K+ +EK + ++ V+ Q +IF + + LA+ +
Sbjct: 2 LQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLL 47
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 42.5 bits (99), Expect = 4e-05
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 318 IKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGE 377
++ + N DE +S+I + +I+ T + A + E + +
Sbjct: 1 VRNVEDVAVN-DESISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKNK------FRIG 52
Query: 378 LTVEQRLSILDRFREGEFKI 397
+ + ++F EGE
Sbjct: 53 IVTATKKGDYEKFVEGEIDH 72
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 41.4 bits (96), Expect = 9e-05
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 23/156 (14%)
Query: 251 VLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFAQDMVPNPLIIKLKR 310
L A ++ TQG K+L + + A+ E D I L +
Sbjct: 81 KLHHAIELLETQGLSALR-AYIKKLYEEAKAGSTKAS-----KEIFSDKRMKKAISLLVQ 134
Query: 311 -EEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGL 369
+E LD+ K +D+ E + + ++F + R+TA + ++ K+G+
Sbjct: 135 AKEIGLDHPK--------MDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 186
Query: 370 NVGLLSGELTVEQRL--------SILDRFREGEFKI 397
G+ + E ILD F GEF +
Sbjct: 187 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 222
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 40.4 bits (93), Expect = 1e-04
Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 317 NIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSG 376
NI Y++ + + + + +I+C++R A ++ +G++
Sbjct: 6 NI--RYMLMEK-FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHA 62
Query: 377 ELTVEQRLSILDRFREGEFKI 397
L R + ++F+ + +I
Sbjct: 63 GLENNVRADVQEKFQRDDLQI 83
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 39.6 bits (91), Expect = 2e-04
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 312 EESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKM 364
E +L I Q+Y + +K ++ ++ + I QA+IFC++ LA+K+
Sbjct: 1 ELTLKGITQYYAFVEE-RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKI 52
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 38.4 bits (88), Expect = 4e-04
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 317 NIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKM 364
NI+Q YV +E+FEA+ + ++FC T++ LA +
Sbjct: 3 NIEQSYVEVNE-NERFEALCRLLKNKEF-YGLVFCKTKRDTKELASML 48
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 35.1 bits (80), Expect = 0.004
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 299 MVPNPLIIKLKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAA 358
VP+P I EE +L + K I + G+ +IFCH++K
Sbjct: 4 TVPHPNI-----EEVALSTTGEIPFYGKAIPLEVIK---------GGRHLIFCHSKKKCD 49
Query: 359 WLAEKMSKEGLNVGLLSGELTVEQRLSILDRFR 391
LA K+ G+N L V + D
Sbjct: 50 ELAAKLVALGINAVAYYRGLDVSVIPTNGDVVV 82
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 32.6 bits (73), Expect = 0.046
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 308 LKREEESLDNIKQHYVMCKNIDEKFEAVSNIYGVVTIGQAMIFCHTRKTAAWLAEKMSKE 367
+R E+L ++ + N K + I + +IF + +++
Sbjct: 57 DERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF--- 113
Query: 368 GLNVGLLSGELTVEQRLSILDRFREGEF 395
+ ++ + E+R IL+ FR G F
Sbjct: 114 --LIPAITHRTSREEREEILEGFRTGRF 139
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 32.2 bits (72), Expect = 0.077
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 345 GQAMIFCHTRKTAAWLAEKMSKEGLN 370
G ++F TR+ A A K+S
Sbjct: 41 GGVLVFESTRRGAEKTAVKLSAITAK 66
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 31.4 bits (70), Expect = 0.078
Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 18/142 (12%)
Query: 146 IAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITDLSV 205
+ +G+GK+ ++ +VL L P+ + G ++K V
Sbjct: 12 HLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKA------HGV 59
Query: 206 RYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQGHQ 265
+R L + + DE AT
Sbjct: 60 DPNIRTGVRTITTGSPITYSTYG------KFLADGGCSGGAYDIIICDECHSTDATSILG 113
Query: 266 DFSIRIQKRLPSDCQIMLFSAT 287
++ Q ++L +AT
Sbjct: 114 IGTVLDQAETAGARLVVLATAT 135
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 28.0 bits (62), Expect = 2.0
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 345 GQAMIFCHTRKTAAWLAEKMSKEGLNVGLLSGELTVEQRLSILDRFREGEFKI 397
F + + A +A + K G +V +L+ + + ++ +
Sbjct: 37 RPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREY----PTIKQKKPDF 85
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 27.2 bits (60), Expect = 4.2
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 38 SPTEDAKPAPSSPDSSAPGNKDEEDKP 64
S A+P P +APG+ D
Sbjct: 9 SHRPAAEPTPPGAQPTAPGSLKAPDTR 35
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 26.2 bits (56), Expect = 4.2
Identities = 21/145 (14%), Positives = 41/145 (28%), Gaps = 14/145 (9%)
Query: 143 HNMIAQSQSGTGKTAAFTLTMLSRVNPSIQEPQVLCLAPTYELAIQIGEVVAKMGKHITD 202
+ G GKT F +L+ + + L LAPT + ++ E +
Sbjct: 8 MTTVLDFHPGAGKTRRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEAFHGLDVKFHT 65
Query: 203 LSVRYAVRGENLERNKKITEQIIIGTPGKVLDWGLKYRFFDLSKIKVFVLDEADVMIATQ 262
+ G + + +V ++DEA +
Sbjct: 66 QAFSAHGSG---REVIDAMCHATLTY--------RMLEPTRVVNWEVIIMDEAHFLDPAS 114
Query: 263 GHQDFSIRIQKRLPSDCQIMLFSAT 287
+ R + +L +AT
Sbjct: 115 IAARGWAAHRARAN-ESATILMTAT 138
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 26.2 bits (56), Expect = 7.2
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 237 LKYRFFDLSKIKVFVLDEADVMIATQGHQDFSIRIQKRLPSDCQIMLFSATYDKEVMEFA 296
L + FVLDE D + Q + I++ D Q ++ + + E +
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIV--ISLKNTMFEKS 402
>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum,
serotype E [TaxId: 1491]}
Length = 411
Score = 25.9 bits (57), Expect = 9.2
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 197 GKHITDLSVRYAVRGENLERNKKITEQI 224
G +I +L V + RG+N N +I I
Sbjct: 373 GYNINNLKVNF--RGQNANLNPRIITPI 398
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.374
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,426,403
Number of extensions: 66769
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 35
Length of query: 399
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,213,086
Effective search space: 378482832
Effective search space used: 378482832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.3 bits)