BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11868
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 270 bits (691), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 124/174 (71%), Positives = 145/174 (83%), Gaps = 1/174 (0%)
Query: 202 PSKEDIISATEASGEQVLYDSAIIHTSMGDIHLQLFK-ECAKTVENFCVHSKNNYYNGHI 260
PSKE++++AT+A G + + DSAIIHTSMGDIH +LF EC KTVENFCVHS+N YYNGH
Sbjct: 3 PSKEEVMAATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHT 62
Query: 261 FHRVIKGFMIQXXXXXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQF 320
FHR+IKGFMIQ +SIWGGEF+DEF S L+HDRPYT+SMANAG NTNGSQF
Sbjct: 63 FHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQF 122
Query: 321 FITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISVK 374
FIT+ PTPWLDNKHTVFGRVTKGMEVVQ ISNVK N KTD+PY+D+ +I+I+VK
Sbjct: 123 FITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 176
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/153 (59%), Positives = 114/153 (74%), Gaps = 2/153 (1%)
Query: 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXX 280
SAII+T+MGDIH+ LF KEC KTV+NF VHS N YYN IFHRVIK FM+Q
Sbjct: 7 SAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGT 66
Query: 281 XXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
+SIWG EF+DEF HL H +P+ VSMAN GPNTNGSQFFIT P PWLD KHTVFG+V
Sbjct: 67 GGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKV 126
Query: 341 TKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
T+G ++V +I V+T+ K D+P +DI++++I +
Sbjct: 127 TQGSKIVLDIEKVRTD-KRDKPLEDIKILNIKI 158
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Query: 222 SAIIHTSMGDIHLQLFKE-CAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXX 280
S +HT +GDI +++F E KT ENF +NYYNG IFHR IKGFM+Q
Sbjct: 8 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 67
Query: 281 XXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
SIWG +F+DE+ +LKH+ VSMAN GPNTNGSQFFIT P LD K+TVFG+V
Sbjct: 68 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 127
Query: 341 TKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
G+E + + + N KT +P +D+ + I++
Sbjct: 128 IDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 160
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Query: 222 SAIIHTSMGDIHLQLFKE-CAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXX 280
S +HT +GDI +++F E KT ENF +NYYNG IFHR IKGFM+Q
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61
Query: 281 XXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
SIWG +F+DE+ +LKH+ VSMAN GPNTNGSQFFIT P LD K+TVFG+V
Sbjct: 62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121
Query: 341 TKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
G+E + + + N KT +P +D+ + I++
Sbjct: 122 IDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Query: 225 IHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXXQ 283
+ TSMG I L+L+ K KT +NF ++ YYNG FHR+IK FMIQ
Sbjct: 16 LETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGA 75
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKG 343
SI+G +F+DE LK ++MANAGP+TNGSQFF+TL PT WLD KHT+FGRV +G
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135
Query: 344 MEVVQNISNVKTNHKTDQPYDDIQVI 369
+ +V + V+TN + D+P DD+++I
Sbjct: 136 IGMVNRVGMVETNSQ-DRPVDDVKII 160
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Query: 225 IHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXXQ 283
+ TSMG I L+L+ K KT +NF ++ YYNG FHR+IK FMIQ
Sbjct: 16 LETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGA 75
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKG 343
SI+G +F+DE LK ++MANAGP+TNGSQFF+TL PT WLD KHT+FGRV +G
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135
Query: 344 MEVVQNISNVKTNHKTDQPYDDIQVI 369
+ +V + V+TN + D+P DD+++I
Sbjct: 136 IGMVNRVGMVETNSQ-DRPVDDVKII 160
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Query: 225 IHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXXQ 283
+ TSMG I L+L+ K KT +NF ++ YYNG FHR+IK FMIQ
Sbjct: 16 LETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGA 75
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKG 343
SI+G +F+DE LK ++MANAGP+TNGSQFF+TL PT WLD KHT+FGRV +G
Sbjct: 76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQG 135
Query: 344 MEVVQNISNVKTNHKTDQPYDDIQVI 369
+ +V + V+TN + D+P DD+++I
Sbjct: 136 IGMVNRVGMVETNSQ-DRPVDDVKII 160
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 225 IHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXXQ 283
+HT+ GD++L+L + KT ENF K +YY+G IFHR I+ F+IQ +
Sbjct: 24 LHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE 83
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKG 343
S WG FKDEF+ +L H +SMAN+GPN+N SQFFIT +LD KHT+FGRV G
Sbjct: 84 SYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGG 143
Query: 344 MEVVQNISNVKTNHKTDQPYDDIQVISISV 373
+V+ + NV+++ KTD+P ++I++ + +V
Sbjct: 144 FDVLTAMENVESDPKTDRPKEEIRIDATTV 173
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 94/170 (55%), Gaps = 15/170 (8%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF-CVHS----------KNNYYNGHIFHRV 264
Q +D I +G I QLF + C KT +NF C+ S K Y G FHRV
Sbjct: 21 QCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRV 80
Query: 265 IKGFMIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFIT 323
+K FMIQ +SI+GG FKDE LKHDR + +SMAN G +TNGSQFFIT
Sbjct: 81 VKNFMIQGGDFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFIT 139
Query: 324 LTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
P P LD H VFG V G EV++ I N+KT+ +PY D++VI V
Sbjct: 140 TKPAPHLDGVHVVFGLVISGFEVIEQIENLKTD-AASRPYADVRVIDCGV 188
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 84/145 (57%), Gaps = 8/145 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQX 272
QV +D +G + +L+ + KT ENF C K Y G FHRVI FM+Q
Sbjct: 3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQG 62
Query: 273 XX-XXXXXXXXQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
+SI+GG+F DE FK H HDRP +SMANAGPNTNGSQFFIT P PWL
Sbjct: 63 GDFTAGNGTGGKSIYGGKFPDENFKKH--HDRPGLLSMANAGPNTNGSQFFITTVPCPWL 120
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKT 355
D KH VFG V G ++V+ + ++ +
Sbjct: 121 DGKHVVFGEVVDGYDIVKKVESLGS 145
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 225 IHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXXQ 283
I+T++GD ++L+ KT NF + +Y+ IFHRVI F+IQ +
Sbjct: 43 IYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGK 102
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKG 343
SI+G F+DE LKH +SM+N GPNTN SQFFITL P P LD KHT+F RV+K
Sbjct: 103 SIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKN 162
Query: 344 MEVVQNISNVKTNHKTDQPYDDIQVISISV 373
M ++NI++V+T T++P D++++ S
Sbjct: 163 MTCIENIASVQTT-ATNKPIFDLKILRTST 191
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 95/169 (56%), Gaps = 15/169 (8%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---C--------VHSKNNYYNGHIFHRV 264
+V D I G I ++L+ + A +T NF C + K +Y G FHRV
Sbjct: 8 RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRV 67
Query: 265 IKGFMIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFIT 323
IK FMIQ +SI+GG F DE + +KHD P+ VSMAN GPNTNGSQFFIT
Sbjct: 68 IKNFMIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFIT 126
Query: 324 LTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISIS 372
TP P L+N H VFG+V G EVV I +KTN K ++P D+ +++
Sbjct: 127 TTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSK-NRPLADVVILNCG 174
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 91/168 (54%), Gaps = 15/168 (8%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNN-------YYNGHIFHRVIK 266
V +D +I T G I ++LF + T ENF C K Y G FHR+I
Sbjct: 22 VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 267 GFMIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLT 325
FMIQ +SI+G +F+DE HD P+ +SMANAGPNTNGSQFFIT
Sbjct: 82 QFMIQGGDFTRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140
Query: 326 PTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
P PWLD KH VFG+V +GMEVV++I K + +P + + + V
Sbjct: 141 PCPWLDGKHVVFGKVLEGMEVVKSIE--KCGSQNGKPTKSVCITASGV 186
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 95/163 (58%), Gaps = 8/163 (4%)
Query: 216 EQVLYDSAIIHTSMGDIHLQLF-KECAKTVENF--CVHSKNNY-YNGHIFHRVIKGFMIQ 271
++V +D I +G + + LF + KTVENF +N + Y G IFHRVI+ FMIQ
Sbjct: 6 DKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQ 65
Query: 272 XXXXXX-XXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
+SI+G F DE +KH VSMANAGPN+NGSQFF+T PTPWL
Sbjct: 66 GGDFTNFDGTGGKSIYGTRFDDE-NLKIKH-FVGAVSMANAGPNSNGSQFFVTTAPTPWL 123
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
D +H VFG+V +GM+VV+ + N KT D+P +++ V
Sbjct: 124 DGRHVVFGKVVEGMDVVKKVENTKTGL-NDKPKKAVKINDCGV 165
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CV------HSKNNYYNGHIFHRVIK 266
+V +D +I +++ G I +LF + +T ENF C KN +Y IFHR+I
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64
Query: 267 GFMIQXX-XXXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLT 325
FM Q +SI+G F DE ++KHD+P +SMANAGPNTN SQFFITL
Sbjct: 65 QFMCQGGDITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 326 PTPWLDNKHTVFGRVTKGMEVVQNI 350
P PWLD KH VFG+V +GM VV+ +
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREM 148
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 91/159 (57%), Gaps = 8/159 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQX 272
+V +D I +G I + LF K+ T ENF C Y IFHRVI+ FMIQ
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQG 72
Query: 273 XXXXX-XXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLD 331
+SI+G +F DE ++KH +SMANAGPNTNGSQFFIT PTPWLD
Sbjct: 73 GDFTNFDGTGGKSIYGEKFADE-NLNVKH-FVGALSMANAGPNTNGSQFFITTAPTPWLD 130
Query: 332 NKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
+H VFG+V GM+VV I KTN D+P +++++
Sbjct: 131 GRHVVFGKVLDGMDVVLRIEKTKTNSH-DRPVKPVKIVA 168
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 90/158 (56%), Gaps = 9/158 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQX 272
+V +D I +G + + LF K KTV+NF K Y FHRVIK FMIQ
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQG 73
Query: 273 XX-XXXXXXXXQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
+SI+G F DE FK LKH P VSMANAG +TNGSQFFIT T WL
Sbjct: 74 GDFTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWL 131
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQV 368
D KH VFG+V +GMEVV+ + KT+ + D+P D+ +
Sbjct: 132 DGKHVVFGKVLEGMEVVRKVETTKTDGR-DKPLKDVTI 168
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 90/158 (56%), Gaps = 9/158 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQX 272
+V +D I +G + + LF K KTV+NF K Y FHRVIK FMIQ
Sbjct: 14 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQG 73
Query: 273 XX-XXXXXXXXQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
+SI+G F DE FK LKH P VSMANAG +TNGSQFFIT T WL
Sbjct: 74 GDFTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWL 131
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQV 368
D KH VFG+V +GMEVV+ + KT+ + D+P D+ +
Sbjct: 132 DGKHVVFGKVLEGMEVVRKVETTKTDGR-DKPLKDVTI 168
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 15/169 (8%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNN--------YYNGHIFHRV 264
+ +D AI + G + +LF + C KT ENF C K +Y +FHRV
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 265 IKGFMIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFIT 323
+K FM+Q +SI+GG F+DE +KH++ + +SMAN G +TNGSQFFIT
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFIT 129
Query: 324 LTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISIS 372
PTP LD H VFG+V G EVV+ I N KT+ +P+ +++++S
Sbjct: 130 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTD-AASKPFAEVRILSCG 177
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 15/169 (8%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNN--------YYNGHIFHRV 264
+ +D AI + G + +LF + C KT ENF C K +Y +FHRV
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 265 IKGFMIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFIT 323
+K FM+Q +SI+GG F+DE +KH++ + +SMAN G +TNGSQFFIT
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFIT 129
Query: 324 LTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISIS 372
PTP LD H VFG+V G EVV+ I N KT+ +P+ +++++S
Sbjct: 130 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTD-AASKPFAEVRILSCG 177
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 90/159 (56%), Gaps = 8/159 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQX 272
+V +D I +G I + LF K+ T ENF C Y IFHRVI+ FMIQ
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQG 72
Query: 273 XXXXX-XXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLD 331
+SI+G +F DE ++KH +SMANAGPNTNGSQFFIT PTPWLD
Sbjct: 73 GDFTNFDGTGGKSIYGEKFADE-NLNVKH-FVGALSMANAGPNTNGSQFFITTAPTPWLD 130
Query: 332 NKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
H VFG+V GM+VV I KTN D+P +++++
Sbjct: 131 GAHVVFGKVLDGMDVVLRIEKTKTNSH-DRPVKPVKIVA 168
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 95/170 (55%), Gaps = 22/170 (12%)
Query: 222 SAIIHTSMGDIHLQLFKECA-KTVENFCV-------HSKNN--------YYNGHIFHRVI 265
+A +HT+ GDI + LF A KTV NF +S N +Y+G +FHRVI
Sbjct: 25 TATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVI 84
Query: 266 KGFMIQXXXXXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLT 325
+GFMIQ +F DEF L+ D+PY ++MANAGP TNGSQFFIT+
Sbjct: 85 QGFMIQGGDPTGTGRGGPGY---KFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVG 141
Query: 326 PTPWLDNKHTVFGRV--TKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
TP L+ +HT+FG V + VV+ IS T+ D+P D + + SI++
Sbjct: 142 KTPHLNRRHTIFGEVIDAESQRVVEAISKTATD-GNDRPTDPVVIESITI 190
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 94/169 (55%), Gaps = 15/169 (8%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNN--------YYNGHIFHRV 264
+ +D AI + G + +LF + C KT ENF C K +Y +FHRV
Sbjct: 28 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 265 IKGFMIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFIT 323
+K FM+Q +SI+GG F+DE +KH+ + +SMAN G +TNGSQFFIT
Sbjct: 88 VKDFMVQGGDFSEGNGRGGESIYGGFFEDE-SFAVKHNAAFLLSMANRGKDTNGSQFFIT 146
Query: 324 LTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISIS 372
PTP LD H VFG+V G EVV+ I N KT+ +P+ +++++S
Sbjct: 147 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTD-AASKPFAEVRILSCG 194
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 90/158 (56%), Gaps = 9/158 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQX 272
+V +D I +G + LF K KTV+NF K Y FHRVIK FMIQ
Sbjct: 17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQG 76
Query: 273 XX-XXXXXXXXQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
+SI+G F DE FK LKH P VSMANAG +TNGSQFFIT T WL
Sbjct: 77 GDFTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWL 134
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQV 368
D KH VFG+V +GMEVV+ + + KT+ + D+P D+ +
Sbjct: 135 DGKHVVFGKVLEGMEVVRKVESTKTDSR-DKPLKDVII 171
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 90/158 (56%), Gaps = 9/158 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQX 272
+V +D I +G + LF K KTV+NF K Y FHRVIK FMIQ
Sbjct: 7 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQG 66
Query: 273 XX-XXXXXXXXQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
+SI+G F DE FK LKH P VSMANAG +TNGSQFFIT T WL
Sbjct: 67 GDFTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWL 124
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQV 368
D KH VFG+V +GMEVV+ + + KT+ + D+P D+ +
Sbjct: 125 DGKHVVFGKVLEGMEVVRKVESTKTDSR-DKPLKDVII 161
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 85/145 (58%), Gaps = 12/145 (8%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CV------HSKNNYYNGHIFHRVIK 266
+V +D +I +++ G I +LF + +T ENF C KN +Y IFHR+I
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64
Query: 267 GFMIQXX-XXXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLT 325
FM Q +SI+G F DE ++KHD+P +SMANAGPNTN SQF ITL
Sbjct: 65 QFMCQGGDITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 326 PTPWLDNKHTVFGRVTKGMEVVQNI 350
P PWLD KH VFG+V +GM VV+ +
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREM 148
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 95/167 (56%), Gaps = 7/167 (4%)
Query: 213 ASGEQVLYDSAI-IHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMI 270
+SG + LY + I T+ GD+ +LF +C K +NF S + YY IFH+ IKGF+I
Sbjct: 8 SSGRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFII 67
Query: 271 QXXXXXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAG----PNTNGSQFFITLTP 326
Q +SI+G F DE LK+DR +SMA+ G PNTNGSQFFIT +
Sbjct: 68 QGGDPTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSS 127
Query: 327 TPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
P L+ ++ +FG++ G E + + N ++ K+ +P D+I + I +
Sbjct: 128 LPQLNGEYVIFGKLIDGFETLNTLENCPSD-KSHKPIDEIIIKDIVI 173
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 216 EQVLYDSAIIHTSMGDIHLQLFKECA-KTVENFCVHS---KNNYYNGHIFHRVIKGFMIQ 271
++V +D I +G I + LF KTVENF + K Y G IFHRVIK FMIQ
Sbjct: 8 DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQ 67
Query: 272 XXX-XXXXXXXXQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPW 329
SI+G F DE FK LKH VSMANAGP+TNGSQFFITLT W
Sbjct: 68 GGDFTARDGTGGMSIYGETFPDENFK--LKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 125
Query: 330 LDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
LD KH VFG+V GM VV +I ++ D+P D +++
Sbjct: 126 LDGKHVVFGKVLDGMTVVHSIE-LQATDGHDRPLTDCTIVN 165
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 91/162 (56%), Gaps = 16/162 (9%)
Query: 214 SGEQVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNN--------YYNGHIF 261
S +V +D I +G I L+LF + KT ENF C K ++ G F
Sbjct: 14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 262 HRVIKGFMIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQF 320
HR+IK FMIQ +SI+G +F+DE H KHD+ +SMANAG NTNGSQF
Sbjct: 74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQF 132
Query: 321 FITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQP 362
FIT PTP LD KH VFG+V KGM V + + NV+ K ++P
Sbjct: 133 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV--KGEKP 172
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 216 EQVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQ 271
V +D +G I +LF + KT NF C K Y G FHRVI FM+Q
Sbjct: 2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQ 61
Query: 272 XXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
+SI+G +F DE LKH++P +SMANAGPNTNGSQFFIT T WL
Sbjct: 62 GGDFTAGNGTGGKSIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWL 120
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
D KH VFG V GM VV+ I + +P I++ V
Sbjct: 121 DGKHVVFGEVIDGMNVVKAIE--AEGSGSGKPRSRIEIAKCGV 161
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 88/160 (55%), Gaps = 9/160 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQX 272
+V +D I +G I + LF K KTVENF K Y G FHRVIK FMIQ
Sbjct: 17 KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQG 76
Query: 273 XXXXXXXXXXQ-SIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
SI+G F DE FK LKH VSMANAGP+TNGSQFFITLT WL
Sbjct: 77 GDITTGDGTGGVSIYGETFPDENFK--LKHYGIGWVSMANAGPDTNGSQFFITLTKPTWL 134
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
D KH VFG+V GM VV +I ++ D+P + +I+
Sbjct: 135 DGKHVVFGKVIDGMTVVHSIE-LQATDGHDRPLTNCSIIN 173
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 14 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 73
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 74 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 132
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 133 KHVVFGKVKEGMNIVEAMERFGSRNGKTSK 162
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 25 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 84
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 85 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 143
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 144 KHVVFGKVKEGMNIVEAMERFGSRNGKTSK 173
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGSRNGKTSK 154
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGSRNGKTSK 154
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 64
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 65 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 123
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 124 KHVVFGKVKEGMNIVEAMERFGSRNGKTSK 153
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 66 NFTHCNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGSRNGKTSK 154
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGSRNGKTSK 154
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 66 NFTHHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGSRNGKTSK 154
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 64
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 65 DFTHHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 123
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 124 KHVVFGKVKEGMNIVEAMKRFGSRNGKTSK 153
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P ++MANAGPNTNGSQFFI T WLD
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGSRNGKTSK 154
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 83/147 (56%), Gaps = 7/147 (4%)
Query: 210 ATEASGEQVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVI 265
A EASG V +D S+G I ++L + KT +NF C K Y G FHR+I
Sbjct: 23 AKEASG-NVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRII 81
Query: 266 KGFMIQXX-XXXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITL 324
GFM+Q +SI+G +F DE LKH + +SMAN G +TNGSQFFITL
Sbjct: 82 PGFMVQGGDYTAHNGTGGRSIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITL 140
Query: 325 TPTPWLDNKHTVFGRVTKGMEVVQNIS 351
T WLD KH VFG V +GM+VV I+
Sbjct: 141 GKTQWLDEKHVVFGEVVEGMDVVHKIA 167
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 83/150 (55%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 64
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 65 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 123
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG V +GM +V+ + + N KT +
Sbjct: 124 KHVVFGAVKEGMNIVEAMERFGSRNGKTSK 153
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FH++I GFM Q
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGG 65
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
KH VFG+V +GM +V+ + + N KT +
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGSRNGKTSK 154
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 85/154 (55%), Gaps = 14/154 (9%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNN-------YYNGHIFHRVI 265
+V +D +I + + G I ++L+ + KT ENF C K +Y +FHRVI
Sbjct: 9 KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 266 KGFMIQXXX-XXXXXXXXQSIWGGEFKDEFKSH--LKHDRPYTVSMANAGPNTNGSQFFI 322
FMIQ +SI+G F+DE S +H +SMANAGPNTNGSQFFI
Sbjct: 69 PNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFI 128
Query: 323 TLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTN 356
TPWLD KH VFGRV G++VV+ + + ++
Sbjct: 129 CTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSS 162
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 83/150 (55%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 124
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
H VFG+V +GM +V+ + + N KT +
Sbjct: 125 XHVVFGKVKEGMNIVEAMERFGSRNGKTSK 154
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 83/150 (55%), Gaps = 7/150 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 66 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 333 KHTVFGRVTKGMEVVQNISNVKT-NHKTDQ 361
H VFG+V +GM +V+ + + N KT +
Sbjct: 125 XHVVFGKVKEGMNIVEAMERFGSRNGKTSK 154
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 224 IIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXX 282
++ T+ GDI ++L+ KE K NF YY+ IFHRV+ GF++Q
Sbjct: 28 LLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGG 87
Query: 283 QSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVT 341
+SI+G FKDEF S L+ +R V+MANAG + NGSQFF TL L+NKHT+FG+VT
Sbjct: 88 ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT 146
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 88/161 (54%), Gaps = 9/161 (5%)
Query: 216 EQVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQ 271
++V +D I +G I + LF K KT NF K Y G FHRVI FMIQ
Sbjct: 7 DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQ 66
Query: 272 XXX-XXXXXXXXQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPW 329
+SI+G +F DE FK LKH +SMANAG +TNGSQFFIT TPW
Sbjct: 67 GGDFTRGDGTGGRSIYGEKFADENFK--LKHYGAGWLSMANAGADTNGSQFFITTVKTPW 124
Query: 330 LDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
LD +H VFG++ +GM+VV+ I + D+P D+ + +
Sbjct: 125 LDGRHVVFGKILEGMDVVRKIEQTE-KLPGDRPKQDVIIAA 164
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 77/136 (56%), Gaps = 6/136 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENFCVHS---KNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF S K Y G FHR+I GFM Q
Sbjct: 10 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 69
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 70 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 128
Query: 333 KHTVFGRVTKGMEVVQ 348
H VFG+V +GM +V+
Sbjct: 129 XHVVFGKVKEGMNIVE 144
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 208 ISATEASGEQVLYDSAIIHTSMGDIHLQLFKECAK-TVENF---CVHSKNNYYNGHIFHR 263
I+ S QV D I + G I + L + T ENF C H K + G FHR
Sbjct: 4 IAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 63
Query: 264 VIKGFMIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFI 322
+I FM Q +SI+G +F DE LKH P +SMAN+GPNTNGSQFF+
Sbjct: 64 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFL 122
Query: 323 TLTPTPWLDNKHTVFGRVTKGMEVVQNI 350
T T WLD KH VFG VT+G++V++ I
Sbjct: 123 TCDKTDWLDGKHVVFGEVTEGLDVLRQI 150
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 85/158 (53%), Gaps = 15/158 (9%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNY--------YNGHIFHRVIKGF 268
V +D +I +G + ++LF + KT ENF + Y G FHRVIK F
Sbjct: 13 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF 72
Query: 269 MIQXXX-XXXXXXXXQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTP 326
MIQ SI+ G F DE FK L+H P +SMAN+GP+TNG QFFIT +
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADENFK--LRHSAPGLLSMANSGPSTNGCQFFITCSK 130
Query: 327 TPWLDNKHTVFGRVTKGMEVVQNISNVKT--NHKTDQP 362
WLD KH VFG++ G+ V++ I NV T N+K P
Sbjct: 131 CDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLP 168
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 214 SGEQVLY-DSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGF 268
SG ++Y D +G + L+L + KT ENF C K Y G FHRVI F
Sbjct: 2 SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSF 61
Query: 269 MIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPT 327
M Q +SI+G F DE LKH P +SMANAGPNTNGSQFFI T
Sbjct: 62 MCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKT 120
Query: 328 PWLDNKHTVFGRVTKGMEVVQNI 350
WLD KH VFG V +GM+VV+ I
Sbjct: 121 DWLDGKHVVFGHVIEGMDVVKKI 143
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 214 SGEQVLY-DSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGF 268
SG ++Y D +G + L+L + KT ENF C K Y G FHRVI F
Sbjct: 1 SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSF 60
Query: 269 MIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPT 327
M Q +SI+G F DE LKH P +SMANAGPNTNGSQFFI T
Sbjct: 61 MCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKT 119
Query: 328 PWLDNKHTVFGRVTKGMEVVQNI 350
WLD KH VFG V +GM+VV+ I
Sbjct: 120 DWLDGKHVVFGHVIEGMDVVKKI 142
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 229 MGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQXXX-XXXXXXXXQ 283
+G + L+L + KT ENF C K Y G FHRVI FM Q +
Sbjct: 16 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 75
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKG 343
SI+G F DE LKH P +SMANAGPNTNGSQFFI T WLD KH VFG V +G
Sbjct: 76 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 134
Query: 344 MEVVQNI 350
M+VV+ I
Sbjct: 135 MDVVKKI 141
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 229 MGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQXXX-XXXXXXXXQ 283
+G + L+L + KT ENF C K Y G FHRVI FM Q +
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKG 343
SI+G F DE LKH P +SMANAGPNTNGSQFFI T WLD KH VFG V +G
Sbjct: 77 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 135
Query: 344 MEVVQNI 350
M+VV+ I
Sbjct: 136 MDVVKKI 142
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 78/142 (54%), Gaps = 6/142 (4%)
Query: 214 SGEQVLYDSAIIHTSMGDIHLQLFKECAK-TVENF---CVHSKNNYYNGHIFHRVIKGFM 269
S QV D I + G I + L + T ENF C H K + G FHR+I FM
Sbjct: 2 SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 61
Query: 270 IQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTP 328
Q +SI+G +F DE LKH P +SMAN+GPNTNGSQFF+T T
Sbjct: 62 CQGGDFTNHNGTGGKSIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTD 120
Query: 329 WLDNKHTVFGRVTKGMEVVQNI 350
WLD KH VFG VT+G++V++ I
Sbjct: 121 WLDGKHVVFGEVTEGLDVLRQI 142
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 17/165 (10%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CV-------HSKNNYYNGHIFHRVI 265
+V +D I + G I ++L+ + KT NF C K ++ G FHR+I
Sbjct: 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 266 KGFMIQXXX-XXXXXXXXQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFIT 323
FMIQ +SI+G +F DE FK KH P +SMANAGPNTNGSQFF+
Sbjct: 65 PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKE--KHTGPGVLSMANAGPNTNGSQFFLC 122
Query: 324 LTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQV 368
T WLD KH VFGRV +G++VV+ + + ++ +P D +
Sbjct: 123 TVKTEWLDGKHVVFGRVVEGLDVVKAVES--NGSQSGKPVKDCMI 165
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQXX 273
V +D A+ +G + +LF + KT ENF K Y G FHR+I GF Q
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGG 64
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F+DE LKH P +S ANAGPNTNGSQFFI T WLD
Sbjct: 65 DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDG 123
Query: 333 KHTVFGRVTKGMEVVQ 348
KH VFG+V +G +V+
Sbjct: 124 KHVVFGKVKEGXNIVE 139
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNY---YNGHIFHRVIKGFMIQXX 273
V ++ +I G I +L+ E KT +NF + + Y IFHRVI FM+Q
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 64
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F DE +KH +P +SMANAG NTNGSQFFIT PT WLD
Sbjct: 65 DFTRHNGTGGKSIYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 123
Query: 333 KHTVFGRVTKGMEVVQNI 350
KH VFG V +G+++V+ +
Sbjct: 124 KHVVFGEVIEGLDIVRKV 141
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNY---YNGHIFHRVIKGFMIQXX 273
V ++ +I G I +L+ E KT +NF + + Y IFHRVI FM+Q
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 65
Query: 274 X-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
+SI+G +F DE +KH +P +SMANAG NTNGSQFFIT PT WLD
Sbjct: 66 DFTRHNGTGGKSIYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDG 124
Query: 333 KHTVFGRVTKGMEVVQNI 350
KH VFG V +G+++V+ +
Sbjct: 125 KHVVFGEVIEGLDIVRKV 142
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 75/146 (51%), Gaps = 13/146 (8%)
Query: 217 QVLYDS-----AIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKG 267
QV +D T +G I LF K+ KT +NF C Y FHR+I
Sbjct: 4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPN 63
Query: 268 FMIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTP 326
FMIQ +SI+G +F DE S KHD+ +SMANAGPNTNGSQFFIT
Sbjct: 64 FMIQGGDFTRGNGTGGRSIYGDKFADENFSR-KHDKKGILSMANAGPNTNGSQFFITTAV 122
Query: 327 TPWLDNKHTVFGRVT--KGMEVVQNI 350
T WLD KH VFG V K VV+ I
Sbjct: 123 TSWLDGKHVVFGEVADEKSYSVVKEI 148
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQX 272
+V +D I + G I ++L + +T ENF C + Y+ FHRVI FM Q
Sbjct: 12 RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQG 71
Query: 273 XX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLD 331
+SI+G +F DE L+H+ +SMAN+GPNTNGSQFFI T WLD
Sbjct: 72 GDFVKGDGTGGKSIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLD 130
Query: 332 NKHTVFGRVTKGMEVVQNISNVKT-NHKTDQP 362
KH VFGRV G VV+ + +V + + K +P
Sbjct: 131 GKHVVFGRVVDGQNVVKKMESVGSKSGKVKEP 162
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 208 ISATEASGEQVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHR 263
I+ S QV D I + G I L + T ENF C H K + G FHR
Sbjct: 5 IAKKARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHR 64
Query: 264 VIKGFMIQXXX-XXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFI 322
+I F Q +SI+G +F DE LKH P +S AN+GPNTNGSQFF+
Sbjct: 65 IIPQFXCQGGDFTNHNGTGGKSIYGKKFDDE-NFILKHTGPGLLSXANSGPNTNGSQFFL 123
Query: 323 TLTPTPWLDNKHTVFGRVTKGMEVVQNI 350
T T WLD KH VFG VT+G++V++ I
Sbjct: 124 TCDKTDWLDGKHVVFGEVTEGLDVLRQI 151
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 211 TEASGEQVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CV--HSKNNY---YNGHIF 261
T S V D + + +G +LF+ KT ENF C + NN Y IF
Sbjct: 55 TNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIF 114
Query: 262 HRVIKGFMIQXXXXXXXXXXXQ-SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQF 320
HRVIK FMIQ SI+G +F DE +KHD+ +SMAN+GPNTNG QF
Sbjct: 115 HRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQF 173
Query: 321 FITLTPTPWLDNKHTVFGRV--TKGMEVVQNISNVKTNHKTDQPYDDIQVI 369
FIT WLD K+ VFGR+ + +++ I NV +P I V+
Sbjct: 174 FITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVV 224
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQXX 273
V +D +G I ++LF +T ENF C K + IFHRVI F+ Q
Sbjct: 9 VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGG 68
Query: 274 XXXXX-XXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
QSI+G +F+DE +KH P +SMAN G NTN SQF ITL LD
Sbjct: 69 DITKHDGTGGQSIYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDF 127
Query: 333 KHTVFGRVTKGMEVVQNI 350
KH VFG V GM+ V+ I
Sbjct: 128 KHVVFGFVKDGMDTVKKI 145
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 22/160 (13%)
Query: 225 IHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXXQ 283
+HT+ G I L+L + A KTVENF + K +Y+G IFHRVI GFMIQ Q
Sbjct: 8 LHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ--GGGFEPGLKQ 65
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAG-PNTNGSQFFITL---------TPTP--WLD 331
+E + LK+D YT++MA P++ +QFFI + +PTP W
Sbjct: 66 KPTDAPIANEANNGLKNDT-YTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGW-- 122
Query: 332 NKHTVFGRVTKGMEVVQNISNVKTNHKT---DQPYDDIQV 368
+ VFG+V +G ++V I VKT K D P DD+ +
Sbjct: 123 -GYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 13/144 (9%)
Query: 225 IHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQX--------XXX 275
I T+ G ++++L + A + ++F Y++ IFHR I+ FMIQ
Sbjct: 11 IVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKK 70
Query: 276 XXXXXXXQSI----WGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLD 331
+SI G F+DEF + L H +SMAN G ++N S+FFIT L+
Sbjct: 71 KEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLN 130
Query: 332 NKHTVFGRVTKGMEVVQNISNVKT 355
NKHT+FGRV G++V++ ++T
Sbjct: 131 NKHTIFGRVVGGLDVLRQWEKLET 154
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 16/155 (10%)
Query: 225 IHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXXQ 283
+ T+ G I L+LF + A +T NF + K+ +Y+G IFHRVI GFMIQ Q
Sbjct: 4 LQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQ--GGGFEPGMKQ 61
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANA-GPNTNGSQFFITLTPTPWLDN--------KH 334
K+E + L ++ YT++MA P++ +QFFI + +LD+ +
Sbjct: 62 KSTRAPIKNEANNGLS-NKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHGWGY 120
Query: 335 TVFGRVTKGMEVVQNISNVKTNHKT---DQPYDDI 366
VFG V +G +VV I +V T + D P DD+
Sbjct: 121 AVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDV 155
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 12/150 (8%)
Query: 224 IIHTSMGDIHLQLFKECAK-TVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXX 282
++ TS G+I L+L K+ A +V+NF + + +YN FHRVI GFMIQ
Sbjct: 8 LLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ--GGGFTEQMQ 65
Query: 283 QSIWGGEFKDEFKSHLKHDRPYTVSMA-NAGPNTNGSQFFITLTPTPWLDN-----KHTV 336
Q K+E + L++ R T++MA A ++ SQFFI + +LD+ + V
Sbjct: 66 QKKPNPPIKNEADNGLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAV 124
Query: 337 FGRVTKGMEVVQNISNVKTNHKTDQPYDDI 366
FG+V KGM+V IS V T+ PY ++
Sbjct: 125 FGKVVKGMDVADKISQVPTHDVG--PYQNV 152
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 12/150 (8%)
Query: 224 IIHTSMGDIHLQLFKECAK-TVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXX 282
++ TS G+I L+L K+ A +V+NF + + +YN FHRVI GFMIQ
Sbjct: 8 LLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ--GGGFTEQMQ 65
Query: 283 QSIWGGEFKDEFKSHLKHDRPYTVSMA-NAGPNTNGSQFFITLTPTPWLDN-----KHTV 336
Q K+E + L++ R T++MA A ++ SQFFI + +LD+ + V
Sbjct: 66 QKKPNPPIKNEADNGLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAV 124
Query: 337 FGRVTKGMEVVQNISNVKTNHKTDQPYDDI 366
FG+V KGM+V IS V T+ PY ++
Sbjct: 125 FGKVVKGMDVADKISQVPTHDVG--PYQNV 152
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 16/161 (9%)
Query: 226 HTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXXQS 284
HT+ GDI ++ F + A +TV+NF + + +YN IFHRVI GFMIQ Q
Sbjct: 5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ--GGGFEPGMKQK 62
Query: 285 IWGGEFKDEFKSHLKHDRPYTVSMANA-GPNTNGSQFFITLTPTPWLDNK--------HT 335
K+E + LK+ R T++MA P++ +QFFI + +L+ +
Sbjct: 63 ATKEPIKNEANNGLKNTRG-TLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121
Query: 336 VFGRVTKGMEVVQNISNVKTNHKT---DQPYDDIQVISISV 373
VF V GM+VV I V T D P +D+ + S++V
Sbjct: 122 VFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 70/152 (46%), Gaps = 23/152 (15%)
Query: 213 ASGEQVLY------DSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVI 265
+SG + LY ++HTS+GD+ ++L+ +EC NF YY IFHRV+
Sbjct: 8 SSGRENLYFQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVV 67
Query: 266 KGFMIQXX--XXXXXXXXXQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPN--------- 314
K F++Q + G F E LK V +AN G +
Sbjct: 68 KDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDER 127
Query: 315 -----TNGSQFFITLTPTPWLDNKHTVFGRVT 341
TNG+QFFITL L+N +T+FG+VT
Sbjct: 128 GRSLGTNGNQFFITLARADVLNNAYTLFGKVT 159
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 226 HTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQXXXXXXXXXXXQS 284
HT+ GDI ++ F + A +TV+NF + + +YN IFHRVI GFMIQ Q
Sbjct: 5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ--GGGFEPGMKQK 62
Query: 285 IWGGEFKDEFKSHLKHDRPYTVSMANA-GPNTNGSQFFITLTPTPWLDNK--------HT 335
K+E + LK+ R T++MA P++ +QFFI + +L+ +
Sbjct: 63 ATKEPIKNEANNGLKNTRG-TLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121
Query: 336 VFGRVTKGMEVVQNISNVKTNHKT---DQPYDDIQVISISV 373
VF V GM+ V I V T D P +D+ + S++V
Sbjct: 122 VFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162
>pdb|1RN4|A Chain A, His92ala Mutation In Ribonuclease T1 Induces Segmental
Flexibility. An X-Ray Study
pdb|4RNT|A Chain A, His 92 Ala Mutation In Ribonuclease T1 Induces Segmental
Flexibility. An X-Ray Study
Length = 104
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 190 SPETDRDVFNEKPSKEDIISATEASG 215
SP DR VFNE +I+AT ASG
Sbjct: 72 SPGADRVVFNENNQLAGVITATGASG 97
>pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus
Mutans
Length = 755
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 22 FAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATER 77
FA+ KL+E + R+ L G+ YD +A F LQ A + +E R+AT+R
Sbjct: 344 FADEKLTEVK--RLAEHLDGREDPAYDLHIAHFDALQAADFRNVKLEDLSRVATKR 397
>pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans
pdb|3T0C|A Chain A, Crystal Structure Of Streptococcus Mutans Mete Complexed
With Zinc
Length = 779
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 22 FAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATER 77
FA+ KL+E + R+ L G+ YD +A F LQ A + +E R+AT+R
Sbjct: 376 FADEKLTEVK--RLAEHLDGREDPAYDLHIAHFDALQAADFRNVKLEDLSRVATKR 429
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,366,932
Number of Sequences: 62578
Number of extensions: 403576
Number of successful extensions: 948
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 77
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)