Query psy11868
Match_columns 374
No_of_seqs 288 out of 1439
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 20:59:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0882|consensus 100.0 5E-119 1E-123 894.2 23.8 350 14-374 208-558 (558)
2 KOG0881|consensus 100.0 6.1E-52 1.3E-56 355.9 9.5 153 220-373 9-162 (164)
3 KOG0546|consensus 100.0 8.1E-51 1.8E-55 398.7 13.1 158 214-373 7-177 (372)
4 KOG0880|consensus 100.0 5.3E-48 1.1E-52 352.5 15.1 155 216-372 40-200 (217)
5 KOG0883|consensus 100.0 1.6E-47 3.4E-52 376.7 12.1 153 220-373 277-430 (518)
6 cd01927 cyclophilin_WD40 cyclo 100.0 1.4E-46 3E-51 332.8 16.8 147 224-371 1-148 (148)
7 cd01923 cyclophilin_RING cyclo 100.0 4.7E-46 1E-50 333.0 18.7 150 223-373 2-152 (159)
8 cd01928 Cyclophilin_PPIL3_like 100.0 4.2E-46 9E-51 331.6 18.1 151 222-373 2-153 (153)
9 COG0652 PpiB Peptidyl-prolyl c 100.0 9.5E-46 2.1E-50 331.2 16.3 147 223-373 2-156 (158)
10 KOG0884|consensus 100.0 3.8E-46 8.2E-51 318.7 11.7 152 222-373 2-154 (161)
11 cd01922 cyclophilin_SpCYP2_lik 100.0 4.7E-45 1E-49 322.5 16.2 145 224-370 1-146 (146)
12 cd01921 cyclophilin_RRM cyclop 100.0 1.6E-44 3.5E-49 325.0 17.6 149 224-373 1-158 (166)
13 KOG0879|consensus 100.0 1.2E-44 2.5E-49 314.2 10.9 157 214-372 9-175 (177)
14 cd01925 cyclophilin_CeCYP16-li 100.0 8.2E-43 1.8E-47 315.6 18.7 152 221-373 6-159 (171)
15 cd01926 cyclophilin_ABH_like c 100.0 1.2E-42 2.6E-47 312.1 17.7 154 216-372 1-164 (164)
16 PLN03149 peptidyl-prolyl isome 100.0 3.9E-42 8.5E-47 315.4 17.3 157 215-373 18-185 (186)
17 PTZ00060 cyclophilin; Provisio 100.0 9E-42 1.9E-46 312.1 19.2 156 215-373 15-181 (183)
18 PTZ00221 cyclophilin; Provisio 100.0 4.1E-41 8.9E-46 320.7 18.5 155 214-373 51-218 (249)
19 PRK10791 peptidyl-prolyl cis-t 100.0 1E-40 2.2E-45 300.4 18.1 149 223-374 2-163 (164)
20 KOG0111|consensus 100.0 6.6E-42 1.4E-46 317.4 10.1 159 211-372 132-295 (298)
21 PRK10903 peptidyl-prolyl cis-t 100.0 4E-40 8.7E-45 303.1 18.3 150 222-374 30-189 (190)
22 KOG0885|consensus 100.0 2.3E-40 5.1E-45 324.8 12.1 152 221-373 13-166 (439)
23 cd01920 cyclophilin_EcCYP_like 100.0 1.7E-39 3.7E-44 289.6 16.4 144 225-371 2-155 (155)
24 cd00317 cyclophilin cyclophili 100.0 1.5E-38 3.2E-43 277.8 16.7 145 224-370 1-146 (146)
25 KOG0415|consensus 100.0 1.7E-38 3.6E-43 310.2 13.1 151 222-373 2-161 (479)
26 PF00160 Pro_isomerase: Cyclop 100.0 1.8E-36 3.8E-41 266.8 17.3 147 223-373 2-155 (155)
27 cd01924 cyclophilin_TLP40_like 100.0 2.5E-36 5.5E-41 274.8 14.2 128 226-353 3-165 (176)
28 KOG0865|consensus 100.0 2.7E-33 5.8E-38 252.9 8.6 155 215-372 3-165 (167)
29 KOG0882|consensus 98.3 7.3E-07 1.6E-11 91.3 5.9 154 218-373 96-261 (558)
30 KOG1408|consensus 96.1 0.011 2.5E-07 64.2 6.6 84 16-131 605-693 (1080)
31 TIGR03268 methan_mark_3 putati 95.0 0.081 1.7E-06 55.7 7.9 101 232-352 203-303 (503)
32 PRK00969 hypothetical protein; 94.9 0.08 1.7E-06 55.8 7.7 101 232-352 206-306 (508)
33 KOG1446|consensus 93.6 1.6 3.4E-05 43.7 13.2 144 2-185 8-172 (311)
34 KOG0266|consensus 93.0 0.46 9.9E-06 49.3 8.9 111 15-183 296-409 (456)
35 KOG0266|consensus 91.8 0.98 2.1E-05 46.9 9.6 73 16-123 255-330 (456)
36 KOG1407|consensus 88.9 0.93 2E-05 44.7 6.0 51 17-103 75-125 (313)
37 KOG0291|consensus 88.8 1.8 4E-05 47.9 8.6 86 13-133 356-442 (893)
38 KOG0275|consensus 88.7 0.21 4.4E-06 50.6 1.4 115 2-121 238-386 (508)
39 KOG1408|consensus 88.5 0.44 9.4E-06 52.5 3.8 42 1-44 620-676 (1080)
40 PTZ00420 coronin; Provisional 88.3 2.2 4.7E-05 46.2 8.9 72 15-121 133-205 (568)
41 cd00200 WD40 WD40 domain, foun 88.1 2.4 5.1E-05 37.1 7.6 72 15-121 185-257 (289)
42 KOG0640|consensus 87.9 0.78 1.7E-05 46.3 4.8 81 8-121 261-343 (430)
43 TIGR03866 PQQ_ABC_repeats PQQ- 87.9 3.9 8.5E-05 37.5 9.3 70 15-119 80-151 (300)
44 cd00200 WD40 WD40 domain, foun 87.8 4.1 8.9E-05 35.6 9.0 60 29-121 155-215 (289)
45 KOG0318|consensus 87.8 2.1 4.6E-05 45.7 8.1 99 15-150 198-298 (603)
46 PF08662 eIF2A: Eukaryotic tra 87.0 2.7 5.9E-05 38.6 7.6 69 14-119 66-139 (194)
47 KOG0319|consensus 86.8 1.3 2.9E-05 48.6 6.2 120 2-182 496-618 (775)
48 TIGR03268 methan_mark_3 putati 86.8 4 8.7E-05 43.4 9.5 112 231-353 376-496 (503)
49 TIGR03866 PQQ_ABC_repeats PQQ- 86.4 6.5 0.00014 36.0 9.9 62 26-121 224-287 (300)
50 PF00400 WD40: WD domain, G-be 86.3 0.64 1.4E-05 30.7 2.4 21 15-37 19-39 (39)
51 KOG0291|consensus 86.1 4 8.6E-05 45.4 9.2 94 1-126 374-479 (893)
52 PF12903 DUF3830: Protein of u 85.8 2 4.3E-05 38.8 5.8 105 231-352 9-130 (147)
53 COG4070 Predicted peptidyl-pro 85.7 1.7 3.7E-05 45.0 6.0 98 231-352 204-305 (512)
54 PTZ00421 coronin; Provisional 84.6 4 8.6E-05 43.3 8.4 72 15-121 133-206 (493)
55 KOG0316|consensus 83.5 1.2 2.6E-05 43.6 3.6 47 1-49 41-99 (307)
56 PF08662 eIF2A: Eukaryotic tra 83.5 9.9 0.00021 34.9 9.6 75 3-112 95-178 (194)
57 PRK00969 hypothetical protein; 82.1 7.8 0.00017 41.3 9.2 115 221-353 51-168 (508)
58 PTZ00421 coronin; Provisional 81.8 7.4 0.00016 41.3 9.1 31 15-47 176-206 (493)
59 KOG0285|consensus 81.7 1.7 3.8E-05 44.6 4.1 32 15-48 159-190 (460)
60 KOG4547|consensus 81.2 8.3 0.00018 41.4 9.1 99 3-137 84-198 (541)
61 KOG0275|consensus 81.1 0.84 1.8E-05 46.3 1.7 82 12-123 218-303 (508)
62 KOG0282|consensus 80.1 0.51 1.1E-05 49.5 -0.2 50 4-54 294-345 (503)
63 KOG0649|consensus 79.4 3.6 7.7E-05 40.6 5.2 44 4-47 141-194 (325)
64 KOG1539|consensus 78.8 3.6 7.9E-05 46.0 5.7 68 1-103 569-636 (910)
65 KOG0305|consensus 77.7 3.6 7.8E-05 43.8 5.1 85 29-135 366-463 (484)
66 KOG0303|consensus 76.4 1.7 3.8E-05 45.0 2.3 28 15-44 181-208 (472)
67 KOG0274|consensus 76.4 11 0.00023 40.7 8.3 108 9-123 250-369 (537)
68 KOG0771|consensus 76.2 11 0.00023 39.1 7.9 72 16-122 153-224 (398)
69 PTZ00420 coronin; Provisional 74.4 4.8 0.0001 43.6 5.1 32 15-48 175-206 (568)
70 PLN00181 protein SPA1-RELATED; 74.4 18 0.00039 40.1 9.8 28 18-47 587-614 (793)
71 COG4070 Predicted peptidyl-pro 74.1 12 0.00027 38.9 7.7 110 231-353 377-499 (512)
72 KOG1446|consensus 73.4 34 0.00074 34.5 10.3 122 7-183 140-262 (311)
73 KOG0283|consensus 73.1 20 0.00044 39.8 9.5 112 15-182 417-531 (712)
74 PF11715 Nup160: Nucleoporin N 71.1 3.9 8.4E-05 43.2 3.5 31 19-50 229-259 (547)
75 smart00029 GASTRIN gastrin / c 70.6 1.3 2.8E-05 28.3 -0.1 14 67-80 3-16 (26)
76 KOG0316|consensus 69.5 4.2 9.1E-05 39.9 3.0 32 15-48 25-56 (307)
77 PLN00181 protein SPA1-RELATED; 68.9 62 0.0014 35.9 12.4 99 25-184 549-649 (793)
78 KOG0286|consensus 68.7 23 0.00051 35.7 8.0 79 15-126 237-316 (343)
79 KOG1539|consensus 67.3 7.6 0.00016 43.6 4.7 107 8-118 158-280 (910)
80 KOG0295|consensus 65.3 8.3 0.00018 39.7 4.3 135 11-182 111-264 (406)
81 KOG2919|consensus 64.2 18 0.00038 37.1 6.2 77 14-120 118-195 (406)
82 KOG0318|consensus 62.7 7.4 0.00016 41.7 3.5 32 16-49 244-275 (603)
83 KOG0274|consensus 62.3 9.6 0.00021 41.0 4.3 83 7-124 367-452 (537)
84 KOG0295|consensus 61.4 16 0.00034 37.8 5.3 98 11-131 237-341 (406)
85 KOG0272|consensus 60.7 22 0.00049 37.2 6.4 85 4-121 338-426 (459)
86 KOG2445|consensus 60.0 6.8 0.00015 39.6 2.5 104 13-126 19-146 (361)
87 TIGR02658 TTQ_MADH_Hv methylam 59.6 49 0.0011 33.8 8.7 58 30-121 278-338 (352)
88 PF02239 Cytochrom_D1: Cytochr 59.2 42 0.00092 34.1 8.2 71 15-121 44-116 (369)
89 KOG0281|consensus 58.7 3.6 7.8E-05 42.3 0.4 24 26-49 335-358 (499)
90 KOG0650|consensus 58.2 18 0.00038 39.6 5.3 43 3-47 395-438 (733)
91 KOG0279|consensus 56.5 16 0.00035 36.5 4.4 36 11-47 66-101 (315)
92 KOG0273|consensus 54.5 15 0.00032 39.1 3.9 46 1-48 434-491 (524)
93 KOG0973|consensus 53.8 14 0.0003 42.3 3.9 36 14-51 178-213 (942)
94 KOG1274|consensus 53.7 19 0.00042 40.8 4.9 82 15-123 146-228 (933)
95 KOG0289|consensus 53.3 35 0.00077 36.0 6.4 38 8-47 389-427 (506)
96 KOG1332|consensus 53.1 8.5 0.00018 38.0 1.9 27 13-41 17-43 (299)
97 KOG4283|consensus 50.3 40 0.00087 34.2 6.1 114 21-138 201-346 (397)
98 PF03022 MRJP: Major royal jel 49.0 35 0.00077 33.5 5.6 66 31-123 34-106 (287)
99 PF13360 PQQ_2: PQQ-like domai 48.9 1.1E+02 0.0024 27.5 8.5 26 96-121 122-148 (238)
100 KOG0643|consensus 48.8 37 0.0008 34.0 5.5 24 25-48 68-91 (327)
101 KOG0273|consensus 48.3 46 0.00099 35.5 6.4 69 25-126 426-495 (524)
102 KOG1963|consensus 47.4 54 0.0012 37.0 7.1 107 15-123 65-197 (792)
103 KOG0315|consensus 47.4 14 0.0003 36.6 2.4 28 25-52 274-301 (311)
104 smart00320 WD40 WD40 repeats. 46.8 16 0.00035 21.1 1.9 21 15-37 20-40 (40)
105 KOG0265|consensus 46.6 20 0.00043 36.2 3.3 24 26-49 107-130 (338)
106 KOG0263|consensus 46.3 17 0.00037 40.3 3.1 71 15-120 543-614 (707)
107 KOG2394|consensus 45.9 9.2 0.0002 41.2 1.0 53 15-102 298-350 (636)
108 KOG0289|consensus 45.7 58 0.0013 34.5 6.6 72 14-120 354-426 (506)
109 KOG4547|consensus 45.2 20 0.00043 38.7 3.3 33 16-50 2-34 (541)
110 KOG0263|consensus 44.1 18 0.00039 40.2 2.8 45 1-47 570-615 (707)
111 KOG3914|consensus 43.7 12 0.00026 38.7 1.4 24 27-50 211-234 (390)
112 KOG2066|consensus 43.7 64 0.0014 36.5 6.9 102 16-124 80-198 (846)
113 PRK04922 tolB translocation pr 43.5 1.2E+02 0.0026 31.0 8.7 37 11-47 207-244 (433)
114 KOG2096|consensus 43.4 19 0.00041 36.8 2.6 36 1-39 269-308 (420)
115 KOG0283|consensus 43.1 29 0.00063 38.6 4.2 47 26-103 519-565 (712)
116 PF00918 Gastrin: Gastrin/chol 42.3 7.9 0.00017 33.5 -0.2 15 64-78 99-113 (116)
117 KOG1273|consensus 41.4 38 0.00081 34.7 4.4 94 25-120 81-190 (405)
118 KOG0288|consensus 41.4 1.7E+02 0.0037 30.9 9.1 84 8-121 341-425 (459)
119 KOG0285|consensus 40.6 25 0.00053 36.5 3.0 80 7-121 235-315 (460)
120 KOG0288|consensus 40.1 35 0.00075 35.8 4.0 39 10-50 389-428 (459)
121 KOG0281|consensus 39.7 23 0.00049 36.7 2.6 47 2-48 343-397 (499)
122 PF05131 Pep3_Vps18: Pep3/Vps1 38.7 47 0.001 29.7 4.2 29 172-200 84-112 (147)
123 PRK01029 tolB translocation pr 37.5 1.7E+02 0.0037 30.2 8.7 34 88-121 374-411 (428)
124 KOG1445|consensus 36.5 1.3E+02 0.0027 33.8 7.6 114 14-181 727-842 (1012)
125 KOG0315|consensus 36.5 55 0.0012 32.6 4.6 75 12-121 220-296 (311)
126 PRK04792 tolB translocation pr 36.5 1.8E+02 0.0039 30.1 8.7 33 88-120 309-345 (448)
127 KOG0772|consensus 36.4 21 0.00047 38.4 1.9 41 14-62 174-214 (641)
128 KOG0646|consensus 36.0 87 0.0019 33.3 6.2 22 26-47 193-214 (476)
129 KOG4328|consensus 35.9 1.4E+02 0.0031 31.8 7.7 120 13-183 375-495 (498)
130 KOG1272|consensus 35.6 28 0.00062 37.0 2.6 26 15-42 301-326 (545)
131 KOG0278|consensus 35.5 2.2E+02 0.0048 28.5 8.5 59 28-120 162-220 (334)
132 PRK03629 tolB translocation pr 35.3 2.1E+02 0.0045 29.4 8.9 33 89-121 247-283 (429)
133 KOG0290|consensus 34.4 30 0.00065 35.0 2.5 30 18-49 208-237 (364)
134 KOG0641|consensus 33.5 51 0.0011 32.4 3.8 100 7-134 182-286 (350)
135 KOG0296|consensus 33.4 34 0.00073 35.4 2.7 23 26-48 343-365 (399)
136 PLN02919 haloacid dehalogenase 33.3 84 0.0018 36.7 6.2 32 14-47 810-841 (1057)
137 KOG0643|consensus 33.3 35 0.00075 34.2 2.7 34 12-47 152-185 (327)
138 PF04053 Coatomer_WDAD: Coatom 32.6 1.2E+02 0.0027 31.8 6.8 51 28-113 123-173 (443)
139 PF01011 PQQ: PQQ enzyme repea 32.5 66 0.0014 21.6 3.3 23 28-50 7-29 (38)
140 TIGR02658 TTQ_MADH_Hv methylam 32.5 1.9E+02 0.0041 29.6 8.0 66 29-121 75-144 (352)
141 KOG2106|consensus 31.6 4.5E+02 0.0098 28.7 10.6 102 11-182 372-476 (626)
142 TIGR02800 propeller_TolB tol-p 31.4 2.8E+02 0.0061 27.4 9.0 36 11-46 193-229 (417)
143 KOG1407|consensus 30.7 1.6E+02 0.0035 29.5 6.7 92 1-120 89-195 (313)
144 PRK04922 tolB translocation pr 30.0 2E+02 0.0043 29.4 7.7 31 88-118 339-373 (433)
145 PRK01742 tolB translocation pr 29.5 3.3E+02 0.0071 27.8 9.2 33 89-121 252-288 (429)
146 PRK02889 tolB translocation pr 29.3 2.3E+02 0.0049 29.0 8.0 18 89-106 375-392 (427)
147 KOG3881|consensus 28.8 36 0.00079 35.4 2.1 28 15-44 298-325 (412)
148 PF09309 FCP1_C: FCP1, C-termi 28.4 19 0.00042 35.0 0.0 19 29-47 52-70 (263)
149 KOG2096|consensus 28.3 39 0.00086 34.6 2.2 22 17-40 96-117 (420)
150 KOG0271|consensus 27.6 62 0.0013 33.9 3.4 31 15-47 213-243 (480)
151 COG4946 Uncharacterized protei 27.2 3.5E+02 0.0076 29.4 8.8 89 29-122 379-486 (668)
152 KOG1274|consensus 27.1 83 0.0018 36.0 4.5 107 8-123 14-136 (933)
153 KOG0302|consensus 27.0 42 0.00091 35.0 2.1 21 253-273 408-428 (440)
154 KOG0650|consensus 27.0 1.7E+02 0.0037 32.4 6.6 37 89-125 405-442 (733)
155 TIGR02800 propeller_TolB tol-p 26.8 2.7E+02 0.0059 27.6 7.9 33 88-120 237-273 (417)
156 KOG0271|consensus 26.6 26 0.00056 36.6 0.5 24 25-48 262-285 (480)
157 PRK02889 tolB translocation pr 25.5 2.7E+02 0.0059 28.4 7.8 32 89-120 332-367 (427)
158 PRK03629 tolB translocation pr 25.5 3.6E+02 0.0079 27.6 8.7 32 88-119 290-325 (429)
159 KOG0294|consensus 24.9 84 0.0018 32.1 3.8 31 16-48 260-295 (362)
160 PRK11028 6-phosphogluconolacto 24.9 4.2E+02 0.009 25.5 8.6 23 22-44 3-26 (330)
161 smart00564 PQQ beta-propeller 24.5 1E+02 0.0023 19.3 3.0 22 27-48 12-33 (33)
162 KOG0284|consensus 23.4 55 0.0012 34.4 2.2 28 18-47 191-218 (464)
163 TIGR00760 araD L-ribulose-5-ph 23.4 65 0.0014 30.7 2.6 71 67-141 10-90 (231)
164 KOG1445|consensus 23.2 51 0.0011 36.6 2.0 31 13-45 176-207 (1012)
165 KOG1273|consensus 22.8 8E+02 0.017 25.5 10.1 79 14-133 30-109 (405)
166 KOG0265|consensus 22.6 85 0.0018 31.9 3.2 49 1-49 114-173 (338)
167 KOG2315|consensus 22.4 1.4E+02 0.0031 32.4 5.1 80 3-118 306-394 (566)
168 PRK00178 tolB translocation pr 22.2 3.9E+02 0.0086 26.9 8.2 32 89-120 291-326 (430)
169 PF00780 CNH: CNH domain; Int 21.7 2.2E+02 0.0049 26.5 5.9 106 8-131 166-272 (275)
170 KOG0292|consensus 21.6 95 0.0021 35.9 3.7 37 1-39 117-165 (1202)
171 PRK04043 tolB translocation pr 21.6 2.7E+02 0.0058 28.9 6.8 16 89-104 323-338 (419)
172 KOG0282|consensus 21.4 81 0.0018 33.7 3.0 30 18-49 269-298 (503)
173 KOG2139|consensus 21.3 80 0.0017 32.9 2.9 89 15-104 203-300 (445)
174 KOG0293|consensus 20.8 83 0.0018 33.3 2.9 23 25-47 456-478 (519)
175 PF03646 FlaG: FlaG protein; 20.6 1.2E+02 0.0027 25.0 3.4 28 32-59 69-98 (107)
No 1
>KOG0882|consensus
Probab=100.00 E-value=5.4e-119 Score=894.17 Aligned_cols=350 Identities=57% Similarity=0.955 Sum_probs=338.3
Q ss_pred eeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEc
Q psy11868 14 VYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFD 93 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd 93 (374)
-++|++++++ ++++||+||+|+|+||||++.|||+++.++.+|++.+.|.+||||||||+||||||.+.....|++||
T Consensus 208 Efsp~g~qis--tl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd 285 (558)
T KOG0882|consen 208 EFSPDGAQIS--TLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD 285 (558)
T ss_pred EEccccCccc--ccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc
Confidence 3688999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeeeeeeEEEEeeeceeEEEecCCCccccchhhcccccccccccccchhhhhccCCcccccCCCceEEEeecc
Q psy11868 94 DSGFIVLYATMLGVKFVNIVTNQCVRFIGKPENLRLLHLSLFQGKVKTRKAATTLEMEAAKNPTLEAIQPDPTLFCTGFN 173 (374)
Q Consensus 94 ~s~~~~~y~t~~gikv~n~~t~~~~~~~g~~e~~r~~~~~l~q~~~~~~~~~~~~~~~~~~n~~l~~~~~dp~l~~ta~~ 173 (374)
||||||||||+|||||+|+.||+|+|||||+|++||+++|||||.++++ ..+++++|+.||+|+ .+.||+++|||||
T Consensus 286 es~~flly~t~~gikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~--~~~~~~~a~~np~~~-~~~dpt~~c~a~k 362 (558)
T KOG0882|consen 286 ESGNFLLYGTILGIKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSN--LAALEVAASNNPLLE-FQKDPTIVCTAFK 362 (558)
T ss_pred CCCCEEEeecceeEEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhcc--chhhhhhhccCcccc-cCCCCeEEEeeee
Confidence 9999999999999999999999999999999999999999999986665 445599999999998 8899999999999
Q ss_pred CceeEEeecCCCCCCCCCCCcccccCCCCCchhccchhhccCceeecceEEEeEeceeEEEEec-ccchHHHHHHHhhhc
Q psy11868 174 KNRFYLFSRREPADIKSPETDRDVFNEKPSKEDIISATEASGEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSK 252 (374)
Q Consensus 174 k~rfylfs~~~p~~~~~~~~~rd~~~ekp~~e~~~~~~~~~~~~~~~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k 252 (374)
||||||| +||++.+ ++||||||+|.+++++++.+..++..+.+.||+||++|||+|.|| ++||+||+||++||+
T Consensus 363 k~rfylf--~ep~~~~---~~~dvfne~p~~~~~~~~~~~~g~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~r 437 (558)
T KOG0882|consen 363 KNRFYLF--REPEFTE---SDRDVFNEKPLKEELMEARQEEGNKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSR 437 (558)
T ss_pred cceEEEE--ecCCCCc---chhhhhccCcChhHhhhhhhccCceecccceEEEecccceEEEecccccchhhhhhhcccc
Confidence 9999999 7887766 678999999999999999988899999999999999999999999 999999999999999
Q ss_pred CCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCC
Q psy11868 253 NNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332 (374)
Q Consensus 253 ~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDg 332 (374)
+|||||+.|||||++||||+|||.|+|+||+||||++|+||++++|+|+||++|||||+||||||||||||+.++|||||
T Consensus 438 ngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~ 517 (558)
T KOG0882|consen 438 NGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDG 517 (558)
T ss_pred CccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEEEEEC
Q psy11868 333 KHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISVK 374 (374)
Q Consensus 333 k~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~Vk 374 (374)
||||||||+.|||||++|++++|+ +++||+++++|.+|+|+
T Consensus 518 khtvfgrv~~gm~vvqri~~v~t~-k~drp~e~v~iinisv~ 558 (558)
T KOG0882|consen 518 KHTVFGRVTAGMDVVQRIEQVKTD-KYDRPYEDVKIINISVK 558 (558)
T ss_pred cceeEEEEecchhHHhHhhhcccC-cCCCCCCceeEEEEecC
Confidence 999999999999999999999997 99999999999999986
No 2
>KOG0881|consensus
Probab=100.00 E-value=6.1e-52 Score=355.92 Aligned_cols=153 Identities=55% Similarity=0.952 Sum_probs=149.3
Q ss_pred cceEEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCC
Q psy11868 220 YDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHL 298 (374)
Q Consensus 220 ~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~L 298 (374)
+..|.++|++|.|++||| +.+|+||.||.+|++.|||+|+.|||||++||||||||+|+|.||.||||.+|+||.++.|
T Consensus 9 ~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~dL 88 (164)
T KOG0881|consen 9 PPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSDL 88 (164)
T ss_pred CCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhhh
Confidence 356899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEEEEE
Q psy11868 299 KHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373 (374)
Q Consensus 299 kH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~V 373 (374)
+|..+|.|||||+|||+|||||||||+|++|||+|||+||||..||+|+.++..+.|| +++||..+++|+++.+
T Consensus 89 khTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td-~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 89 KHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETD-NSDRPIDEVKIIKAYP 162 (164)
T ss_pred cccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecC-CCCCCccceeeEeeec
Confidence 9999999999999999999999999999999999999999999999999999999999 8999999999998764
No 3
>KOG0546|consensus
Probab=100.00 E-value=8.1e-51 Score=398.68 Aligned_cols=158 Identities=51% Similarity=0.823 Sum_probs=150.9
Q ss_pred cCceeecceEEEeEeceeEEEEec-ccchHHHHHHHhhhcC--C---------ccCCcEEEEEEcCeEEeeCCCC-CCCC
Q psy11868 214 SGEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKN--N---------YYNGHIFHRVIKGFMIQTGDPT-GTGT 280 (374)
Q Consensus 214 ~~~~~~~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~--G---------yY~gt~FhRVi~~f~IQgGDp~-g~Gt 280 (374)
+.|++|+|+.|..-+.|+|++||| +.||+||+||..||.+ | .|+|+.|||||++|||||||.+ |+|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 578999999999999999999999 9999999999999953 1 5999999999999999999987 9999
Q ss_pred CCccccCCCCcccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCC
Q psy11868 281 GGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTD 360 (374)
Q Consensus 281 gG~si~G~~f~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~ 360 (374)
||+||||..|+||. ..|+|++||+|||||.||||||||||||+.|+|||||+|+|||+||+|++||..|+++.+| ..+
T Consensus 87 GGeSIYG~~FdDEn-F~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d-~~s 164 (372)
T KOG0546|consen 87 GGESIYGEKFDDEN-FELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETD-EES 164 (372)
T ss_pred Cccccccccccccc-ceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccc-cCC
Confidence 99999999999997 6899999999999999999999999999999999999999999999999999999999999 667
Q ss_pred CCCCCeEEEEEEE
Q psy11868 361 QPYDDIQVISISV 373 (374)
Q Consensus 361 kP~~~I~I~~i~V 373 (374)
+|+.+|+|.+|..
T Consensus 165 kP~~dV~I~dCGe 177 (372)
T KOG0546|consen 165 KPLADVVISDCGE 177 (372)
T ss_pred CCccceEeccccc
Confidence 9999999999964
No 4
>KOG0880|consensus
Probab=100.00 E-value=5.3e-48 Score=352.45 Aligned_cols=155 Identities=54% Similarity=0.869 Sum_probs=148.2
Q ss_pred ceeecceEEEeEeceeEEEEec-ccchHHHHHHHhhhcC---C-ccCCcEEEEEEcCeEEeeCCCC-CCCCCCccccCCC
Q psy11868 216 EQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKN---N-YYNGHIFHRVIKGFMIQTGDPT-GTGTGGQSIWGGE 289 (374)
Q Consensus 216 ~~~~~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~---G-yY~gt~FhRVi~~f~IQgGDp~-g~GtgG~si~G~~ 289 (374)
.++++|+.+.....|+|+|.|| +.+|+||+||+.||.+ + -|.|+.||||||+|||||||.+ |+|+||.||||..
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~ 119 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEK 119 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCC
Confidence 4689999999999999999999 9999999999999973 3 3999999999999999999988 7899999999999
Q ss_pred CcccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEE
Q psy11868 290 FKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVI 369 (374)
Q Consensus 290 f~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~ 369 (374)
|+||+ ..|+|++||.|||||.||++||||||||+.++|||||+|+|||+|++|||+|.+|++++|| ..++|+++++|.
T Consensus 120 F~DEN-f~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD-~~dkP~e~v~I~ 197 (217)
T KOG0880|consen 120 FPDEN-FKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTD-ERDKPLEDVVIA 197 (217)
T ss_pred CCCcc-ceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccC-CCCCccccEEEe
Confidence 99997 6899999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred EEE
Q psy11868 370 SIS 372 (374)
Q Consensus 370 ~i~ 372 (374)
+|.
T Consensus 198 ~~g 200 (217)
T KOG0880|consen 198 NCG 200 (217)
T ss_pred ecC
Confidence 984
No 5
>KOG0883|consensus
Probab=100.00 E-value=1.6e-47 Score=376.70 Aligned_cols=153 Identities=50% Similarity=0.842 Sum_probs=149.2
Q ss_pred cceEEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCC
Q psy11868 220 YDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHL 298 (374)
Q Consensus 220 ~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~L 298 (374)
-.+|-++|+.|+|.|||+ +.+|++|+||++||++|||+|+.|||.|++||||||||+|+|.||+||||.+|.|||.+.|
T Consensus 277 kgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~~~l 356 (518)
T KOG0883|consen 277 KGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFCSNL 356 (518)
T ss_pred cceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccccccCCCC
Confidence 357889999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEEEEE
Q psy11868 299 KHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373 (374)
Q Consensus 299 kH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~V 373 (374)
.|+.+|+|||||+|||+|||||||+..++.+||++|||||||+.|+++|.+|+++++| ..++|+++|+|.++.|
T Consensus 357 ~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d-~~DrP~e~I~i~~~~V 430 (518)
T KOG0883|consen 357 SHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETD-EKDRPKEEIKIEDAIV 430 (518)
T ss_pred CcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCC-CCCCcccceEEeeeEE
Confidence 9999999999999999999999999999999999999999999999999999999999 5699999999999876
No 6
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.4e-46 Score=332.78 Aligned_cols=147 Identities=76% Similarity=1.273 Sum_probs=142.5
Q ss_pred EEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCCC
Q psy11868 224 IIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDR 302 (374)
Q Consensus 224 i~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r 302 (374)
+++|++|+|+|||| +.||++|+||++||+.+||+++.||||+|+|+|||||+.++|.++.++|+..+++|+.+.++|.+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 47899999999999 99999999999999999999999999999999999999999999999999999999888899999
Q ss_pred cceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEEE
Q psy11868 303 PYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISI 371 (374)
Q Consensus 303 ~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~i 371 (374)
+|+|+||+.+|++++||||||+.++||||++|+|||||++|||||++|++++++ ++++|+++|+|.+|
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~-~~~~P~~~i~I~~~ 148 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTD-KNDRPYEDIKIINI 148 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCC-CCCCCcCCeEEEeC
Confidence 999999999999999999999999999999999999999999999999999998 68999999999875
No 7
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=4.7e-46 Score=332.95 Aligned_cols=150 Identities=54% Similarity=0.907 Sum_probs=146.2
Q ss_pred EEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCC
Q psy11868 223 AIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHD 301 (374)
Q Consensus 223 vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~ 301 (374)
|+++|++|+|+|+|| +.||+||+||+.||+.|||+|+.||||+|+|||||||+.++|+++.++||..+++|+.+.++|+
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h~ 81 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSHD 81 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCcC
Confidence 689999999999999 9999999999999999999999999999999999999999999999999999999988889999
Q ss_pred CcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEEEEE
Q psy11868 302 RPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373 (374)
Q Consensus 302 r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~V 373 (374)
++|+|+|++.++++++||||||++++||||++|+|||||++|||+|++|++++++ .+++|+++|+|.+|.|
T Consensus 82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~-~~~~P~~~i~I~~~~i 152 (159)
T cd01923 82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDP-GTDRPKEEIKIEDTSV 152 (159)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCC-CCCCCCCCeEEEEeEE
Confidence 9999999999999999999999999999999999999999999999999999988 7899999999999987
No 8
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=4.2e-46 Score=331.58 Aligned_cols=151 Identities=53% Similarity=0.973 Sum_probs=145.9
Q ss_pred eEEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCC
Q psy11868 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKH 300 (374)
Q Consensus 222 ~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH 300 (374)
+++++|+.|+|+|||| +.||+||+||+.||+++||+|+.||||+|+||+||||+.++|+++.++||..+++|+.+.++|
T Consensus 2 ~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~ 81 (153)
T cd01928 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKH 81 (153)
T ss_pred EEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCc
Confidence 3789999999999999 999999999999999999999999999999999999999999999999999999998778999
Q ss_pred CCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEEEEE
Q psy11868 301 DRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373 (374)
Q Consensus 301 ~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~V 373 (374)
+++|+|+||+.+|++++|||||++.++||||++|+|||||++|||||++|++++++ ++++|..+|+|.+|+|
T Consensus 82 ~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 82 DSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVD-KKYRPLEEIRIKDVTI 153 (153)
T ss_pred CCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCC-CCCCCcCCeEEEEeEC
Confidence 99999999999999999999999999999999999999999999999999999998 7899999999999975
No 9
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-46 Score=331.19 Aligned_cols=147 Identities=53% Similarity=0.881 Sum_probs=134.7
Q ss_pred EEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCC-CCCCccccCCCCcccccCCCCC
Q psy11868 223 AIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGT-GTGGQSIWGGEFKDEFKSHLKH 300 (374)
Q Consensus 223 vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~-GtgG~si~G~~f~dE~~~~LkH 300 (374)
++++|+.|+|+|+|| +.||+||+||++||+.|||+|+.|||||++||||||||+++ |++|+ +.+|++|++ ...|
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~-~~~~ 77 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENF-ALNG 77 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccccc-cccc
Confidence 689999999999999 99999999999999999999999999999999999999987 99998 489999975 4455
Q ss_pred CC--cceEeecccC-CCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCC---CCCCCCCeEEEEEEE
Q psy11868 301 DR--PYTVSMANAG-PNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHK---TDQPYDDIQVISISV 373 (374)
Q Consensus 301 ~r--~G~VSman~g-pntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~---~~kP~~~I~I~~i~V 373 (374)
.+ +|+|||||++ ||+|+||||||+.++||||++|+|||+|++|||||++|++.+++.. .+.|..+++|.++.+
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI 156 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence 55 8999999998 9999999999999999999999999999999999999999888732 356778999998775
No 10
>KOG0884|consensus
Probab=100.00 E-value=3.8e-46 Score=318.69 Aligned_cols=152 Identities=52% Similarity=0.899 Sum_probs=149.4
Q ss_pred eEEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCC
Q psy11868 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKH 300 (374)
Q Consensus 222 ~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH 300 (374)
++.+||..|+|.|||| +.+|++|+||+.+|...||++++|||-+|+||+|+|||+.+|.||.||||++|+||+..-|+|
T Consensus 2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh 81 (161)
T KOG0884|consen 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_pred eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhh
Confidence 5789999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEEEEE
Q psy11868 301 DRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373 (374)
Q Consensus 301 ~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~V 373 (374)
+.+|+|||||.|||+|+||||||.+.+||||-+|||||+|++|+|.|++|+.+++++++.||+.++.|.+++|
T Consensus 82 ~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti 154 (161)
T KOG0884|consen 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_pred ccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence 9999999999999999999999999999999999999999999999999999999988899999999999987
No 11
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=4.7e-45 Score=322.53 Aligned_cols=145 Identities=59% Similarity=1.044 Sum_probs=139.7
Q ss_pred EEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCCC
Q psy11868 224 IIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDR 302 (374)
Q Consensus 224 i~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r 302 (374)
+++|+.|+|+|+|| +.||++|+||+.||++|||+++.||||+|+|+|||||+.++|.++.++||..|++|..+.++|.+
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~ 80 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG 80 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence 46899999999999 99999999999999999999999999999999999999999999999999999999878899999
Q ss_pred cceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEE
Q psy11868 303 PYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370 (374)
Q Consensus 303 ~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~ 370 (374)
+|+|||++.+|++++||||||++++|+||++|+|||||++|||||++|++++++ +++|.++|+|.+
T Consensus 81 ~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~--~~~P~~~I~I~~ 146 (146)
T cd01922 81 AGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ--TDRPIDEVKILK 146 (146)
T ss_pred CeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC--CCCcCCCeEEeC
Confidence 999999999999999999999999999999999999999999999999999997 689999999963
No 12
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.6e-44 Score=324.95 Aligned_cols=149 Identities=44% Similarity=0.749 Sum_probs=141.2
Q ss_pred EEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccC-------CCCccccc
Q psy11868 224 IIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWG-------GEFKDEFK 295 (374)
Q Consensus 224 i~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G-------~~f~dE~~ 295 (374)
+++|+.|+|+|||| +.||+||+||++||+.+||+|+.||||+++|||||||+.++|.++.++|+ ..+++|+.
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 47899999999999 99999999999999999999999999999999999999999999999886 35788887
Q ss_pred CCCCCCCcceEeecccCCCCCcceEEEEcCC-CCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEEEEE
Q psy11868 296 SHLKHDRPYTVSMANAGPNTNGSQFFITLTP-TPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373 (374)
Q Consensus 296 ~~LkH~r~G~VSman~gpntngSQFFITl~~-~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~V 373 (374)
+.++|+++|+||||+.++++++||||||+.+ +||||++|+|||||++|||||++|++++++ .+++|+++|+|.+|+|
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~-~~~~P~~~i~I~~~~i 158 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVD-DDGRPLKDIRIKHTHI 158 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCC-CCCCCCCCeEEEEEEE
Confidence 8899999999999999999999999999986 899999999999999999999999999998 6899999999999987
No 13
>KOG0879|consensus
Probab=100.00 E-value=1.2e-44 Score=314.17 Aligned_cols=157 Identities=45% Similarity=0.709 Sum_probs=150.7
Q ss_pred cCceeecceEEEeEeceeEEEEec-ccchHHHHHHHhhhcCCc--------cCCcEEEEEEcCeEEeeCCCC-CCCCCCc
Q psy11868 214 SGEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNY--------YNGHIFHRVIKGFMIQTGDPT-GTGTGGQ 283 (374)
Q Consensus 214 ~~~~~~~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~Gy--------Y~gt~FhRVi~~f~IQgGDp~-g~GtgG~ 283 (374)
.+|.+++|+++..++.|+|.|||| +.+|+|+|||.+.|.+.| |+++.|||||++|||||||.. |+|+|-.
T Consensus 9 ~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~ 88 (177)
T KOG0879|consen 9 NNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVA 88 (177)
T ss_pred CCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEE
Confidence 478899999999999999999999 999999999999998776 999999999999999999965 8999999
Q ss_pred cccCCCCcccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCC
Q psy11868 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPY 363 (374)
Q Consensus 284 si~G~~f~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~ 363 (374)
||||.+|+||+ ..|+|++||+|||||+|+++||.|||||..++.|||+||+|||||++|+.++++||++++. .+.||+
T Consensus 89 sIy~~~F~DEN-FtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G-~NnkPK 166 (177)
T KOG0879|consen 89 SIYGSTFPDEN-FTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTG-PNNKPK 166 (177)
T ss_pred EEcCCCCCCcc-eeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCC-CCCCCC
Confidence 99999999997 6899999999999999999999999999999999999999999999999999999999998 799999
Q ss_pred CCeEEEEEE
Q psy11868 364 DDIQVISIS 372 (374)
Q Consensus 364 ~~I~I~~i~ 372 (374)
-+|.|..|.
T Consensus 167 l~v~i~qCG 175 (177)
T KOG0879|consen 167 LPVVIVQCG 175 (177)
T ss_pred CcEEEeecc
Confidence 999999874
No 14
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=8.2e-43 Score=315.58 Aligned_cols=152 Identities=47% Similarity=0.803 Sum_probs=145.4
Q ss_pred ceEEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCC
Q psy11868 221 DSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLK 299 (374)
Q Consensus 221 d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~Lk 299 (374)
..++++|++|+|+|+|| +.||+||+||+.||+.+||+|+.||||+|+|||||||+.++|+++.++||..|++|..+.++
T Consensus 6 ~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~~~~~ 85 (171)
T cd01925 6 GKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFHSRLR 85 (171)
T ss_pred cEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccccCcC
Confidence 35789999999999999 99999999999999999999999999999999999999999999999999999999888899
Q ss_pred CCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEE-eCHHHHHHHhcCCCCCCCCCCCCCeEEEEEEE
Q psy11868 300 HDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVT-KGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373 (374)
Q Consensus 300 H~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVi-eGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~V 373 (374)
|+++|+|+||+.++++++||||||++++|+||++|+|||+|+ ++++++++|++++++ ++++|.++|+|.+|+|
T Consensus 86 ~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~-~~~~P~~~i~I~~~~i 159 (171)
T cd01925 86 FNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETD-KDERPVYPPKITSVEV 159 (171)
T ss_pred CCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcC-CCCCcCCCeEEEEEEE
Confidence 999999999999999999999999999999999999999999 468889999999998 6789999999999987
No 15
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.2e-42 Score=312.07 Aligned_cols=154 Identities=50% Similarity=0.806 Sum_probs=145.3
Q ss_pred ceeecceEEEeEeceeEEEEec-ccchHHHHHHHhhhc--CC------ccCCcEEEEEEcCeEEeeCCCC-CCCCCCccc
Q psy11868 216 EQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSK--NN------YYNGHIFHRVIKGFMIQTGDPT-GTGTGGQSI 285 (374)
Q Consensus 216 ~~~~~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k--~G------yY~gt~FhRVi~~f~IQgGDp~-g~GtgG~si 285 (374)
|++++|+.+..+++|+|+|||| +.||++|+||++||+ .+ ||+++.||||+|+|||||||+. ++|+++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~ 80 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI 80 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence 5789999999999999999999 999999999999998 35 8999999999999999999975 788999999
Q ss_pred cCCCCcccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCC
Q psy11868 286 WGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDD 365 (374)
Q Consensus 286 ~G~~f~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~ 365 (374)
||..+++|. ..++|+++|+||||+.+|++++||||||+.++|+||++|+|||||++|||||++|++++++ +++|+.+
T Consensus 81 ~g~~~~~e~-~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~--~~~P~~~ 157 (164)
T cd01926 81 YGEKFPDEN-FKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG--NGKPKKK 157 (164)
T ss_pred cCCccCCCC-ccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC--CCCCcCC
Confidence 999999995 5789999999999999999999999999999999999999999999999999999999996 7899999
Q ss_pred eEEEEEE
Q psy11868 366 IQVISIS 372 (374)
Q Consensus 366 I~I~~i~ 372 (374)
|+|.+|.
T Consensus 158 i~I~~cG 164 (164)
T cd01926 158 VVIADCG 164 (164)
T ss_pred eEEEECC
Confidence 9999983
No 16
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=3.9e-42 Score=315.43 Aligned_cols=157 Identities=46% Similarity=0.711 Sum_probs=147.0
Q ss_pred CceeecceEEEeEeceeEEEEec-ccchHHHHHHHhhhcCCc--------cCCcEEEEEEcCeEEeeCCCC-CCCCCCcc
Q psy11868 215 GEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNY--------YNGHIFHRVIKGFMIQTGDPT-GTGTGGQS 284 (374)
Q Consensus 215 ~~~~~~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~Gy--------Y~gt~FhRVi~~f~IQgGDp~-g~GtgG~s 284 (374)
.|.+++++.+..++.|+|+|+|| +.||+||+||+.||+..| |+++.||||+|+|||||||+. ++|+|+.+
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~ 97 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVS 97 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCccc
Confidence 46788899998899999999999 999999999999997654 999999999999999999974 88999999
Q ss_pred ccCCCCcccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEE-eCHHHHHHHhcCCCCCCCCCCC
Q psy11868 285 IWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVT-KGMEVVQNISNVKTNHKTDQPY 363 (374)
Q Consensus 285 i~G~~f~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVi-eGmdVL~~Ie~~~td~~~~kP~ 363 (374)
+||..|++|. ..++|.++|+|||++.++++++||||||+.++|+||++|+|||+|+ +|||||++|++++++ .+++|.
T Consensus 98 ~~g~~f~~e~-~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~-~~~~P~ 175 (186)
T PLN03149 98 IYGSKFEDEN-FIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATG-PNNRPK 175 (186)
T ss_pred ccCCccCCcc-cccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCC-CCCCCc
Confidence 9999999986 4678999999999999999999999999999999999999999999 799999999999998 789999
Q ss_pred CCeEEEEEEE
Q psy11868 364 DDIQVISISV 373 (374)
Q Consensus 364 ~~I~I~~i~V 373 (374)
++|+|.+|.+
T Consensus 176 ~~i~I~~cG~ 185 (186)
T PLN03149 176 LACVISECGE 185 (186)
T ss_pred CCeEEEeCEe
Confidence 9999999986
No 17
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=9e-42 Score=312.13 Aligned_cols=156 Identities=49% Similarity=0.778 Sum_probs=146.9
Q ss_pred CceeecceEEEeEeceeEEEEec-ccchHHHHHHHhhhc---------CCccCCcEEEEEEcCeEEeeCCCC-CCCCCCc
Q psy11868 215 GEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSK---------NNYYNGHIFHRVIKGFMIQTGDPT-GTGTGGQ 283 (374)
Q Consensus 215 ~~~~~~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k---------~GyY~gt~FhRVi~~f~IQgGDp~-g~GtgG~ 283 (374)
.|++++++++..++.|+|+|||| +.||++|+||++||+ .+||+|+.||||+|+|+|||||+. ++|++|.
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~ 94 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGE 94 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCC
Confidence 56789999999999999999999 999999999999996 579999999999999999999976 6789999
Q ss_pred cccCCCCcccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCC
Q psy11868 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPY 363 (374)
Q Consensus 284 si~G~~f~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~ 363 (374)
++||..+++|. ..++|+++|+|+|++.++++++||||||+.++|+||++|+|||||++|||||++|+++++. +++|.
T Consensus 95 ~~~g~~~~~e~-~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~--~~~P~ 171 (183)
T PTZ00060 95 SIYGRKFTDEN-FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ--SGYPK 171 (183)
T ss_pred cccccccCCcc-ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC--CCCCc
Confidence 99999999995 5789999999999999999999999999999999999999999999999999999999874 68999
Q ss_pred CCeEEEEEEE
Q psy11868 364 DDIQVISISV 373 (374)
Q Consensus 364 ~~I~I~~i~V 373 (374)
++|+|.+|.+
T Consensus 172 ~~v~I~~cg~ 181 (183)
T PTZ00060 172 KPVVVTDCGE 181 (183)
T ss_pred CCeEEEEeEE
Confidence 9999999986
No 18
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=4.1e-41 Score=320.67 Aligned_cols=155 Identities=26% Similarity=0.351 Sum_probs=143.3
Q ss_pred cCceeecceEEEeEeceeEEEEec-ccchHHHHHHHhhhcCC-----------ccCCcEEEEEEcC-eEEeeCCCCCCCC
Q psy11868 214 SGEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNN-----------YYNGHIFHRVIKG-FMIQTGDPTGTGT 280 (374)
Q Consensus 214 ~~~~~~~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~G-----------yY~gt~FhRVi~~-f~IQgGDp~g~Gt 280 (374)
..+++++++.+...+.|+|+|+|| +.||+||+||+.||++. +|+|+.||||+++ ||||+||+.+
T Consensus 51 ~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~--- 127 (249)
T PTZ00221 51 NSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS--- 127 (249)
T ss_pred CCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---
Confidence 357899999999999999999999 99999999999999742 3999999999986 8999999874
Q ss_pred CCccccCCCCcccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCC
Q psy11868 281 GGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTD 360 (374)
Q Consensus 281 gG~si~G~~f~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~ 360 (374)
+|.++||..|+||. ..++|+++|+||||+.|||+||||||||+.++||||++|+|||+|++|||||++|++++++ .++
T Consensus 128 ~g~s~~G~~f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d-~~g 205 (249)
T PTZ00221 128 FNVSSTGTPIADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLD-DVG 205 (249)
T ss_pred CCccCCCCcccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcC-CCC
Confidence 35678899999996 4789999999999999999999999999999999999999999999999999999999998 689
Q ss_pred CCCCCeEEEEEEE
Q psy11868 361 QPYDDIQVISISV 373 (374)
Q Consensus 361 kP~~~I~I~~i~V 373 (374)
+|+++|+|.+|.+
T Consensus 206 rP~~~V~I~~Cgv 218 (249)
T PTZ00221 206 RPLLPVTVSFCGA 218 (249)
T ss_pred CCCCCeEEEECeE
Confidence 9999999999976
No 19
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1e-40 Score=300.45 Aligned_cols=149 Identities=36% Similarity=0.591 Sum_probs=131.4
Q ss_pred EEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCC
Q psy11868 223 AIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHD 301 (374)
Q Consensus 223 vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~ 301 (374)
++++|+.|+|+|+|| +.||+||+||+.||+.|||+++.||||+|+|||||||+. ++.+ ...|+..+++|....++|
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~-~~~~-~~~~~~~~~~e~~~~~~~- 78 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFE-PGMK-QKATKEPIKNEANNGLKN- 78 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcC-CCCC-cCCCCCCcCCcccccccC-
Confidence 678999999999999 999999999999999999999999999999999999974 2222 234677889997666777
Q ss_pred CcceEeecccC-CCCCcceEEEEcCCCCCCC-------C-CCeEEEEEEeCHHHHHHHhcCCCCCC---CCCCCCCeEEE
Q psy11868 302 RPYTVSMANAG-PNTNGSQFFITLTPTPWLD-------N-KHTVFGRVTKGMEVVQNISNVKTNHK---TDQPYDDIQVI 369 (374)
Q Consensus 302 r~G~VSman~g-pntngSQFFITl~~~p~LD-------g-k~tVFGrVieGmdVL~~Ie~~~td~~---~~kP~~~I~I~ 369 (374)
++|+||||+.+ |++|+|||||++.+++||| + +|+|||+|++|||||++|+++++++. +++|..+|+|.
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~ 158 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence 57999999874 9999999999999999886 2 79999999999999999999999732 37999999999
Q ss_pred EEEEC
Q psy11868 370 SISVK 374 (374)
Q Consensus 370 ~i~Vk 374 (374)
+|+|.
T Consensus 159 ~~~i~ 163 (164)
T PRK10791 159 SVTVS 163 (164)
T ss_pred EEEEe
Confidence 99873
No 20
>KOG0111|consensus
Probab=100.00 E-value=6.6e-42 Score=317.39 Aligned_cols=159 Identities=43% Similarity=0.689 Sum_probs=150.4
Q ss_pred hhccCceeecceEEEeEeceeEEEEec-ccchHHHHHHHhhhc--CCc-cCCcEEEEEEcCeEEeeCCCC-CCCCCCccc
Q psy11868 211 TEASGEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSK--NNY-YNGHIFHRVIKGFMIQTGDPT-GTGTGGQSI 285 (374)
Q Consensus 211 ~~~~~~~~~~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k--~Gy-Y~gt~FhRVi~~f~IQgGDp~-g~GtgG~si 285 (374)
++..+|+++.++-+.....|+|++.|. +..|+|++||..||. .|| |+|++||||||.||+||||.+ ++|+||.||
T Consensus 132 aa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksi 211 (298)
T KOG0111|consen 132 AAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSI 211 (298)
T ss_pred hhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccc
Confidence 345679999999999999999999999 999999999999995 455 999999999999999999988 889999999
Q ss_pred cCCCCcccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCC
Q psy11868 286 WGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDD 365 (374)
Q Consensus 286 ~G~~f~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~ 365 (374)
||.+|.||+ ..|+|+.||+|||||+|+|+||||||||+..+.|||++|+|||.|++||+||+++++..+ +.++|.+.
T Consensus 212 ygkkfdden-f~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs--ksgkp~qk 288 (298)
T KOG0111|consen 212 YGKKFDDEN-FTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS--KSGKPQQK 288 (298)
T ss_pred ccccccccc-eeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC--CCCCcceE
Confidence 999999997 689999999999999999999999999999999999999999999999999999999987 68999999
Q ss_pred eEEEEEE
Q psy11868 366 IQVISIS 372 (374)
Q Consensus 366 I~I~~i~ 372 (374)
|+|.+|.
T Consensus 289 v~i~~cg 295 (298)
T KOG0111|consen 289 VKIVECG 295 (298)
T ss_pred EEEEecc
Confidence 9999884
No 21
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=4e-40 Score=303.12 Aligned_cols=150 Identities=35% Similarity=0.534 Sum_probs=133.0
Q ss_pred eEEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCC
Q psy11868 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKH 300 (374)
Q Consensus 222 ~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH 300 (374)
.++++|+.|+|+|+|| +.||+||+||++||+.|||+|+.||||+|+|||||||+.+... ...++..+++|....++|
T Consensus 30 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~--~~~~~~~~~~e~~~~l~~ 107 (190)
T PRK10903 30 HVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEADNGLRN 107 (190)
T ss_pred EEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCC--CCCCCCcccCcccccCcC
Confidence 4789999999999999 9999999999999999999999999999999999999875432 234577889997655655
Q ss_pred CCcceEeeccc-CCCCCcceEEEEcCCCCCCCC-----CCeEEEEEEeCHHHHHHHhcCCCCCC---CCCCCCCeEEEEE
Q psy11868 301 DRPYTVSMANA-GPNTNGSQFFITLTPTPWLDN-----KHTVFGRVTKGMEVVQNISNVKTNHK---TDQPYDDIQVISI 371 (374)
Q Consensus 301 ~r~G~VSman~-gpntngSQFFITl~~~p~LDg-----k~tVFGrVieGmdVL~~Ie~~~td~~---~~kP~~~I~I~~i 371 (374)
++|+||||+. +||+|+||||||+.++||||+ +|+|||+|++|||||++|++++++.. .++|..+|+|.+|
T Consensus 108 -~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~ 186 (190)
T PRK10903 108 -TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSA 186 (190)
T ss_pred -CCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEE
Confidence 5799999986 599999999999999999995 89999999999999999999999721 5799999999999
Q ss_pred EEC
Q psy11868 372 SVK 374 (374)
Q Consensus 372 ~Vk 374 (374)
+|.
T Consensus 187 ~v~ 189 (190)
T PRK10903 187 KVL 189 (190)
T ss_pred EEe
Confidence 873
No 22
>KOG0885|consensus
Probab=100.00 E-value=2.3e-40 Score=324.82 Aligned_cols=152 Identities=47% Similarity=0.819 Sum_probs=147.6
Q ss_pred ceEEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCC
Q psy11868 221 DSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLK 299 (374)
Q Consensus 221 d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~Lk 299 (374)
..+++.|+.|+|.|||| .+||++|.||++||-.|||+|+.|||++|+|++|||||+|+|+||+||||.+|++|+|++|+
T Consensus 13 gkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~h~Rlr 92 (439)
T KOG0885|consen 13 GKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEFHPRLR 92 (439)
T ss_pred ceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhhcCccee
Confidence 45899999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEE-eCHHHHHHHhcCCCCCCCCCCCCCeEEEEEEE
Q psy11868 300 HDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVT-KGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373 (374)
Q Consensus 300 H~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVi-eGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~V 373 (374)
+.|.|+|+|||++.+.||||||+|++++|||+++||+||+|+ +-+-.+-+|..+.++ .++||..+-+|.+|+|
T Consensus 93 f~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eid-a~~Rp~~p~kI~s~EV 166 (439)
T KOG0885|consen 93 FNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEID-ADDRPVDPPKIKSVEV 166 (439)
T ss_pred eeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccc-cccCCCCccceeeeEe
Confidence 999999999999999999999999999999999999999999 468889999999998 7999999999999987
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.7e-39 Score=289.56 Aligned_cols=144 Identities=39% Similarity=0.563 Sum_probs=126.9
Q ss_pred EeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCCCc
Q psy11868 225 IHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRP 303 (374)
Q Consensus 225 ~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r~ 303 (374)
++|+.|+|+|+|| +.||+||+||+.||+.|||+|+.||||+|+|||||||+..++.+ ..++..+++|....+ |.++
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~~~~e~~~~~-~~~~ 78 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--KETLKPIKNEAGNGL-SNTR 78 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc--cccCCcccCcccccc-cCCc
Confidence 5799999999999 99999999999999999999999999999999999998755443 345678888865444 4567
Q ss_pred ceEeeccc-CCCCCcceEEEEcCCCCCCCC-----CCeEEEEEEeCHHHHHHHhcCCCCCC---CCCCCCCeEEEEE
Q psy11868 304 YTVSMANA-GPNTNGSQFFITLTPTPWLDN-----KHTVFGRVTKGMEVVQNISNVKTNHK---TDQPYDDIQVISI 371 (374)
Q Consensus 304 G~VSman~-gpntngSQFFITl~~~p~LDg-----k~tVFGrVieGmdVL~~Ie~~~td~~---~~kP~~~I~I~~i 371 (374)
|+||||+. +|++++|||||++.++|+||+ +|||||+|++|||||++|++++++.. +++|+.+|+|.++
T Consensus 79 G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 79 GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred eEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 99999986 489999999999999999995 79999999999999999999999732 3799999999874
No 24
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.5e-38 Score=277.83 Aligned_cols=145 Identities=52% Similarity=0.826 Sum_probs=134.9
Q ss_pred EEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCCC
Q psy11868 224 IIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDR 302 (374)
Q Consensus 224 i~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r 302 (374)
+++|+.|+|+|+|| +.||++|+||+.||+.+||+++.|||++|+++|||||+.+.+.++ +.++..+++|..+...|.+
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~ 79 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR 79 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence 36899999999999 999999999999999999999999999999999999998665543 5678899999987777888
Q ss_pred cceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEE
Q psy11868 303 PYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370 (374)
Q Consensus 303 ~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~ 370 (374)
+|+|+|++.++++++|||||++.+.|+||++|+|||+|++|||+|++|++.+++ ++++|..+|+|.+
T Consensus 80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~-~~~~P~~~i~I~~ 146 (146)
T cd00317 80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTD-ENGRPIKPVTISD 146 (146)
T ss_pred CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCC-CCCcCcCceEEeC
Confidence 999999999999999999999999999999999999999999999999999998 6899999999963
No 25
>KOG0415|consensus
Probab=100.00 E-value=1.7e-38 Score=310.19 Aligned_cols=151 Identities=47% Similarity=0.776 Sum_probs=144.7
Q ss_pred eEEEeEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCC-------CCccc
Q psy11868 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGG-------EFKDE 293 (374)
Q Consensus 222 ~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~-------~f~dE 293 (374)
.|+++|++|+|+|.|| +++|.+|.||++||+-.|||.|.||-|.++|.+|+|||+|+|.||+||||. .|+.|
T Consensus 2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence 4889999999999999 999999999999999999999999999999999999999999999999973 47999
Q ss_pred ccCCCCCCCcceEeecccCCCCCcceEEEEcCCC-CCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEEEE
Q psy11868 294 FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPT-PWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISIS 372 (374)
Q Consensus 294 ~~~~LkH~r~G~VSman~gpntngSQFFITl~~~-p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~ 372 (374)
+.|.++|.+.|+|||+++|.|.+||||||||+++ ..||++|+|||+|++|||+|.+|+.+-+| ++++|+++|+|.+..
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD-~~~rPykdIRI~HTi 160 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVD-PKNRPYKDIRIKHTI 160 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcC-CCCCcccceeeeeeE
Confidence 9999999999999999999999999999999974 68999999999999999999999999999 789999999999987
Q ss_pred E
Q psy11868 373 V 373 (374)
Q Consensus 373 V 373 (374)
|
T Consensus 161 i 161 (479)
T KOG0415|consen 161 I 161 (479)
T ss_pred E
Confidence 6
No 26
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=1.8e-36 Score=266.81 Aligned_cols=147 Identities=51% Similarity=0.796 Sum_probs=132.0
Q ss_pred EEEeEe-ceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCC--ccccCCCCccccc-CC
Q psy11868 223 AIIHTS-MGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGG--QSIWGGEFKDEFK-SH 297 (374)
Q Consensus 223 vi~~Tt-~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG--~si~G~~f~dE~~-~~ 297 (374)
+.++|+ +|+|+|+|| +.||++|+||+.||+.++|+|+.|||++|+++||+|++.+++..+ ...++..+++|.. ..
T Consensus 2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~ 81 (155)
T PF00160_consen 2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSL 81 (155)
T ss_dssp EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTS
T ss_pred EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCcccccccccccc
Confidence 678896 999999999 999999999999999999999999999999999999988765422 1345557899985 34
Q ss_pred CCCCCcceEeecccC--CCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCeEEEEEEE
Q psy11868 298 LKHDRPYTVSMANAG--PNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373 (374)
Q Consensus 298 LkH~r~G~VSman~g--pntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I~I~~i~V 373 (374)
+.| ++|+|+|++.+ +++++|||||++.+.||||++|+|||+|++||+||++|++++++ . +|.++|+|.+|+|
T Consensus 82 ~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~-~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 82 LKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTD-E--RPKQDVTISSCGV 155 (155)
T ss_dssp SSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBT-T--EBSSTEEEEEEEE
T ss_pred ccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCC-C--ccCCCeEEEEeEC
Confidence 667 78999999986 88999999999999999999999999999999999999999987 3 9999999999987
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=2.5e-36 Score=274.83 Aligned_cols=128 Identities=33% Similarity=0.552 Sum_probs=112.4
Q ss_pred eEeceeEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCC---------------------Cc
Q psy11868 226 HTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG---------------------GQ 283 (374)
Q Consensus 226 ~Tt~G~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~Gtg---------------------G~ 283 (374)
.|+.|+|+|+|| +.||+||+||++||+.+||+++.||||+|+||||||||.+++.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 489999999999 99999999999999999999999999999999999999866433 34
Q ss_pred cccCCCCc----ccccCCCCCCCcceEeecccC--CCCCcceEEEEcC-------CCCCCCCCCeEEEEEEeCHHHHHHH
Q psy11868 284 SIWGGEFK----DEFKSHLKHDRPYTVSMANAG--PNTNGSQFFITLT-------PTPWLDNKHTVFGRVTKGMEVVQNI 350 (374)
Q Consensus 284 si~G~~f~----dE~~~~LkH~r~G~VSman~g--pntngSQFFITl~-------~~p~LDgk~tVFGrVieGmdVL~~I 350 (374)
++|+..++ ++..+.+.|..+|+||||+.+ ||+++|||||++. ++||||++|+|||+|++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 67776553 333355677788999999987 7999999999998 8999999999999999999999999
Q ss_pred hcC
Q psy11868 351 SNV 353 (374)
Q Consensus 351 e~~ 353 (374)
+..
T Consensus 163 ~~g 165 (176)
T cd01924 163 KVG 165 (176)
T ss_pred cCC
Confidence 743
No 28
>KOG0865|consensus
Probab=100.00 E-value=2.7e-33 Score=252.88 Aligned_cols=155 Identities=45% Similarity=0.747 Sum_probs=143.4
Q ss_pred CceeecceEEEeEeceeEEEEec-ccchHHHHHHHhhhcC--C-ccCCcEEEE---EEcCeEEeeCCCC-CCCCCCcccc
Q psy11868 215 GEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKN--N-YYNGHIFHR---VIKGFMIQTGDPT-GTGTGGQSIW 286 (374)
Q Consensus 215 ~~~~~~d~vi~~Tt~G~I~IeLf-d~aPktveNF~~L~k~--G-yY~gt~FhR---Vi~~f~IQgGDp~-g~GtgG~si~ 286 (374)
+|++++|+++...++|++.++|| +..|+|++||..||.. + -|++..||| .+++||+||||.+ ++|+||.|||
T Consensus 3 ~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy 82 (167)
T KOG0865|consen 3 NPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIY 82 (167)
T ss_pred CCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEec
Confidence 57899999999999999999999 9999999999888852 2 399999999 3347999999987 8899999999
Q ss_pred CCCCcccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCCe
Q psy11868 287 GGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDI 366 (374)
Q Consensus 287 G~~f~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~I 366 (374)
+..|+||. ..|+|..||.|||||+|||+|||||||++..+.|||++|+|||+|.+||+++++++.... .+++|..+|
T Consensus 83 ~ekF~Den-FilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs--~~gk~~~~i 159 (167)
T KOG0865|consen 83 GEKFDDEN-FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS--RNGKTSKKI 159 (167)
T ss_pred ccccCCcC-cEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC--cCCcccccE
Confidence 99999996 689999999999999999999999999999999999999999999999999999999765 589999999
Q ss_pred EEEEEE
Q psy11868 367 QVISIS 372 (374)
Q Consensus 367 ~I~~i~ 372 (374)
.|.+|.
T Consensus 160 ~i~dcg 165 (167)
T KOG0865|consen 160 TIADCG 165 (167)
T ss_pred EEecCC
Confidence 999885
No 29
>KOG0882|consensus
Probab=98.32 E-value=7.3e-07 Score=91.33 Aligned_cols=154 Identities=25% Similarity=0.259 Sum_probs=130.2
Q ss_pred eecceEEEeEece----eEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCC--CCCCCCccccCCC-
Q psy11868 218 VLYDSAIIHTSMG----DIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPT--GTGTGGQSIWGGE- 289 (374)
Q Consensus 218 ~~~d~vi~~Tt~G----~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~--g~GtgG~si~G~~- 289 (374)
.++..+-+.|..| -|.|+++ +-.|.-++-|.+.|..+|+++..|.||.+.+++|.||.. .+-.|----|..+
T Consensus 96 ~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 96 DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 4567788899999 7999999 999999999999999999999999999999999999964 2222211223332
Q ss_pred ---C-cccccCCCCCCCcceEeecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcCCCCCCCCCCCCC
Q psy11868 290 ---F-KDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDD 365 (374)
Q Consensus 290 ---f-~dE~~~~LkH~r~G~VSman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~~td~~~~kP~~~ 365 (374)
| +++.+..++|+. .++...+......+-+|++.-.+.+.+..+..|||++.+|-++++.|++..++ ....|..+
T Consensus 176 ~~qfPr~~l~~~~K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~-~~~q~ks~ 253 (558)
T KOG0882|consen 176 PFQFPRTNLNFELKHET-DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD-AQYQPKSP 253 (558)
T ss_pred cccCccccccccccccc-hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh-hhhccccc
Confidence 2 444567799985 68899888877888999999999999999999999999999999999999998 78999999
Q ss_pred eEEEEEEE
Q psy11868 366 IQVISISV 373 (374)
Q Consensus 366 I~I~~i~V 373 (374)
+.|.++++
T Consensus 254 y~l~~Vel 261 (558)
T KOG0882|consen 254 YGLMHVEL 261 (558)
T ss_pred cccceeeh
Confidence 99999875
No 30
>KOG1408|consensus
Probab=96.10 E-value=0.011 Score=64.22 Aligned_cols=84 Identities=24% Similarity=0.462 Sum_probs=65.3
Q ss_pred ccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCC
Q psy11868 16 DESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDS 95 (374)
Q Consensus 16 ~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s 95 (374)
||+--+-+ |.|-||+|||||+.+||..|.|--|- .+...+..++-|.|
T Consensus 605 dp~~k~v~--t~cQDrnirif~i~sgKq~k~FKgs~------------------------------~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 605 DPTSKLVV--TVCQDRNIRIFDIESGKQVKSFKGSR------------------------------DHEGDLIKVILDPS 652 (1080)
T ss_pred CCCcceEE--EEecccceEEEeccccceeeeecccc------------------------------cCCCceEEEEECCC
Confidence 45555555 88999999999999999999995431 23355788999999
Q ss_pred CceEEEe-eeeeeEEEEeeeceeE-EEecCCC---ccccch
Q psy11868 96 GFIVLYA-TMLGVKFVNIVTNQCV-RFIGKPE---NLRLLH 131 (374)
Q Consensus 96 ~~~~~y~-t~~gikv~n~~t~~~~-~~~g~~e---~~r~~~ 131 (374)
|.+|.-. |=--+.+++.++|+|| +..|-.| .+.|++
T Consensus 653 giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence 9998765 2344789999999986 6788888 478877
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.98 E-value=0.081 Score=55.70 Aligned_cols=101 Identities=21% Similarity=0.363 Sum_probs=66.8
Q ss_pred EEEEecccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCCCcceEeeccc
Q psy11868 232 IHLQLFKECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANA 311 (374)
Q Consensus 232 I~IeLfd~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r~G~VSman~ 311 (374)
+.+||...+|+++|+|+.+.++|.++ .-+....|. +..+.-|...+.|+ +..-+.|+|++.|.
T Consensus 203 ~evE~~~~~p~s~EH~la~~~~G~~~---Vd~~tsTfi-----------~d~~L~g~~~p~En---~~~R~rGtVTVRn~ 265 (503)
T TIGR03268 203 VEVELDPNAPVSVEHFLALMEDGTFR---VDYRTSTFI-----------SDDSLRGLDKPEEN---IEKRRRGAVTVRNS 265 (503)
T ss_pred EEEEEcCCCChhHHHHHHHHhCCeEE---EeeeecceE-----------ecccccCccCCccc---cCcccceeEEEEee
Confidence 56677789999999999999998642 111111111 11222244555554 33335699999998
Q ss_pred CCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhc
Q psy11868 312 GPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISN 352 (374)
Q Consensus 312 gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~ 352 (374)
|.+ --.-||-..+-| ..-.|+|+|+|++|||.++--++
T Consensus 266 G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 266 GVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred ccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence 754 245788877655 34469999999999999875543
No 32
>PRK00969 hypothetical protein; Provisional
Probab=94.90 E-value=0.08 Score=55.83 Aligned_cols=101 Identities=24% Similarity=0.373 Sum_probs=66.4
Q ss_pred EEEEecccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCCCcceEeeccc
Q psy11868 232 IHLQLFKECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANA 311 (374)
Q Consensus 232 I~IeLfd~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r~G~VSman~ 311 (374)
+.++|...+|+++|+|+.+.+.|.++ .-+....|. +..+.-|...+.|+ +..-+.|+|++.|.
T Consensus 206 ~eve~~~~~p~s~EH~la~~~~G~f~---Vd~~tstfI-----------~d~~L~g~~~p~En---~~~R~~GtVTVRt~ 268 (508)
T PRK00969 206 VEVELDPGAPKSVEHFLALLEDGTFE---VDFETSTFI-----------ADDRLQGLKIPEEN---FEPRRRGTVTVRTA 268 (508)
T ss_pred EEEEEcCCCCchHHHHHHHHhCCeEE---EeeeecceE-----------eeccccCccCCccc---cCccccceEEEEee
Confidence 55677778999999999999998632 111111111 11222244555554 23335699999998
Q ss_pred CCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhc
Q psy11868 312 GPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISN 352 (374)
Q Consensus 312 gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~ 352 (374)
|.+. -.-||-..+-| ..-.|+|+|+|++|||.++--++
T Consensus 269 G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 269 GVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred ccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 7543 46788877665 33469999999999999875543
No 33
>KOG1446|consensus
Probab=93.61 E-value=1.6 Score=43.71 Aligned_cols=144 Identities=18% Similarity=0.353 Sum_probs=92.2
Q ss_pred eEeeeecceeeee-eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcc
Q psy11868 2 RVFSFLSGKLTRV-YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLE 80 (374)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~ 80 (374)
++|.-..|+++.+ |+.+|+... +.|.|-.+|+||-.+||-.+++--
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~li--tss~dDsl~LYd~~~g~~~~ti~s------------------------------- 54 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLI--TSSEDDSLRLYDSLSGKQVKTINS------------------------------- 54 (311)
T ss_pred cccccCCCceeEEEecCCCCEEE--EecCCCeEEEEEcCCCceeeEeec-------------------------------
Confidence 4566678888876 888888887 667899999999999999998722
Q ss_pred cccccCcceEEEcCCCceEEEeeee---eeEEEEeeeceeEEEecCCCc-cc----------cchhhc------cccccc
Q psy11868 81 KSEQLSLSNVLFDDSGFIVLYATML---GVKFVNIVTNQCVRFIGKPEN-LR----------LLHLSL------FQGKVK 140 (374)
Q Consensus 81 ~~~~~~~~~~~fd~s~~~~~y~t~~---gikv~n~~t~~~~~~~g~~e~-~r----------~~~~~l------~q~~~~ 140 (374)
....-.-+.|=--.+-+||+|-. -|+.+++++|+.+|...-... +- ||.-|+ +--+.+
T Consensus 55 --kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~ 132 (311)
T KOG1446|consen 55 --KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK 132 (311)
T ss_pred --ccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC
Confidence 11122456777778888888763 489999999999998765321 11 222221 000001
Q ss_pred ccccccchhhhhccCCcccccCCCceEEEeeccCceeEEeecCCC
Q psy11868 141 TRKAATTLEMEAAKNPTLEAIQPDPTLFCTGFNKNRFYLFSRREP 185 (374)
Q Consensus 141 ~~~~~~~~~~~~~~n~~l~~~~~dp~l~~ta~~k~rfylfs~~~p 185 (374)
+-.+ -|..+.+|+. ...+.=.+||+|...+..-||-.|.-
T Consensus 133 ~cqg----~l~~~~~pi~-AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 133 KCQG----LLNLSGRPIA-AFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred CCce----EEecCCCcce-eECCCCcEEEEecCCCeEEEEEeccc
Confidence 1000 1122222221 12344578999999999999987754
No 34
>KOG0266|consensus
Probab=92.99 E-value=0.46 Score=49.32 Aligned_cols=111 Identities=17% Similarity=0.313 Sum_probs=72.5
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEE--EEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEE
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLT--RVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLF 92 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~--~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~f 92 (374)
..+.+..++ +-|.|+.|||||..+|++. +.... ..... ....+.|
T Consensus 296 f~~d~~~l~--s~s~d~~i~vwd~~~~~~~~~~~~~~------------------------------~~~~~-~~~~~~f 342 (456)
T KOG0266|consen 296 FSPDGNLLV--SASYDGTIRVWDLETGSKLCLKLLSG------------------------------AENSA-PVTSVQF 342 (456)
T ss_pred ECCCCCEEE--EcCCCccEEEEECCCCceeeeecccC------------------------------CCCCC-ceeEEEE
Confidence 456667776 4478999999999999965 22211 01122 5679999
Q ss_pred cCCCceEEEeeee-eeEEEEeeeceeEEEecCCCccccchhhcccccccccccccchhhhhccCCcccccCCCceEEEee
Q psy11868 93 DDSGFIVLYATML-GVKFVNIVTNQCVRFIGKPENLRLLHLSLFQGKVKTRKAATTLEMEAAKNPTLEAIQPDPTLFCTG 171 (374)
Q Consensus 93 d~s~~~~~y~t~~-gikv~n~~t~~~~~~~g~~e~~r~~~~~l~q~~~~~~~~~~~~~~~~~~n~~l~~~~~dp~l~~ta 171 (374)
.++|.+|+=++.= =+|..|+.++++++.+--..+. ....|. +. ...+..++.++
T Consensus 343 sp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~---~~~~~~-------------------~~---~~~~~~~i~sg 397 (456)
T KOG0266|consen 343 SPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL---VRCIFS-------------------PT---LSTGGKLIYSG 397 (456)
T ss_pred CCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc---ceeEec-------------------cc---ccCCCCeEEEE
Confidence 9999999998865 4788888888888876433322 011111 00 02345568888
Q ss_pred ccCceeEEeecC
Q psy11868 172 FNKNRFYLFSRR 183 (374)
Q Consensus 172 ~~k~rfylfs~~ 183 (374)
+.-.-+|+|.-.
T Consensus 398 ~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 398 SEDGSVYVWDSS 409 (456)
T ss_pred eCCceEEEEeCC
Confidence 888888988543
No 35
>KOG0266|consensus
Probab=91.83 E-value=0.98 Score=46.88 Aligned_cols=73 Identities=16% Similarity=0.334 Sum_probs=52.1
Q ss_pred ccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCC
Q psy11868 16 DESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDS 95 (374)
Q Consensus 16 ~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s 95 (374)
.|.++..+ .-|.|+.|||||..+|++.+++.. . ...-..+.|..+
T Consensus 255 ~p~g~~i~--Sgs~D~tvriWd~~~~~~~~~l~~--------------------------------h-s~~is~~~f~~d 299 (456)
T KOG0266|consen 255 SPDGNLLV--SGSDDGTVRIWDVRTGECVRKLKG--------------------------------H-SDGISGLAFSPD 299 (456)
T ss_pred cCCCCEEE--EecCCCcEEEEeccCCeEEEeeec--------------------------------c-CCceEEEEECCC
Confidence 45554444 556899999999999999999843 0 012245789999
Q ss_pred CceEEEeeeee-eEEEEeeece--eEEEecC
Q psy11868 96 GFIVLYATMLG-VKFVNIVTNQ--CVRFIGK 123 (374)
Q Consensus 96 ~~~~~y~t~~g-ikv~n~~t~~--~~~~~g~ 123 (374)
|++|+=++.=| |+|.|+.++. |++.+=.
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 330 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSG 330 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccC
Confidence 99998887444 6888888888 4555433
No 36
>KOG1407|consensus
Probab=88.90 E-value=0.93 Score=44.74 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=39.8
Q ss_pred cccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCCC
Q psy11868 17 ESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSG 96 (374)
Q Consensus 17 ~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s~ 96 (374)
+++++|| +.+.|++||+||+.+||.+..+.- .....|+.|-.+|
T Consensus 75 ~~~d~~a--tas~dk~ir~wd~r~~k~~~~i~~----------------------------------~~eni~i~wsp~g 118 (313)
T KOG1407|consen 75 KHPDLFA--TASGDKTIRIWDIRSGKCTARIET----------------------------------KGENINITWSPDG 118 (313)
T ss_pred CCCcceE--EecCCceEEEEEeccCcEEEEeec----------------------------------cCcceEEEEcCCC
Confidence 3567888 778999999999999999866521 2345789999999
Q ss_pred ceEEEee
Q psy11868 97 FIVLYAT 103 (374)
Q Consensus 97 ~~~~y~t 103 (374)
++++.+.
T Consensus 119 ~~~~~~~ 125 (313)
T KOG1407|consen 119 EYIAVGN 125 (313)
T ss_pred CEEEEec
Confidence 9887654
No 37
>KOG0291|consensus
Probab=88.78 E-value=1.8 Score=47.89 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=68.9
Q ss_pred eeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEE
Q psy11868 13 RVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLF 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~f 92 (374)
.-|-|.|+..| |=|.|+||+|||..+|=.+-+|+|=- ....-+.|
T Consensus 356 l~YSpDgq~ia--TG~eDgKVKvWn~~SgfC~vTFteHt---------------------------------s~Vt~v~f 400 (893)
T KOG0291|consen 356 LAYSPDGQLIA--TGAEDGKVKVWNTQSGFCFVTFTEHT---------------------------------SGVTAVQF 400 (893)
T ss_pred EEECCCCcEEE--eccCCCcEEEEeccCceEEEEeccCC---------------------------------CceEEEEE
Confidence 34666666776 78899999999999999999999811 12346789
Q ss_pred cCCCceEEEeeeee-eEEEEeeeceeEEEecCCCccccchhh
Q psy11868 93 DDSGFIVLYATMLG-VKFVNIVTNQCVRFIGKPENLRLLHLS 133 (374)
Q Consensus 93 d~s~~~~~y~t~~g-ikv~n~~t~~~~~~~g~~e~~r~~~~~ 133 (374)
-.+||.|+-.||=| +..-++...++-|.+--++..-|-.+|
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva 442 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA 442 (893)
T ss_pred EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE
Confidence 99999999999987 567788888888888888777776666
No 38
>KOG0275|consensus
Probab=88.74 E-value=0.21 Score=50.55 Aligned_cols=115 Identities=20% Similarity=0.308 Sum_probs=69.5
Q ss_pred eEeeeecceeeeee------------------ccccceeeeeeecCCCCEEEEEeCCceEEEEeechhH-HHHHHH--Hh
Q psy11868 2 RVFSFLSGKLTRVY------------------DESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLA-RFADLQ--KA 60 (374)
Q Consensus 2 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~-~~~~~~--~~ 60 (374)
.||.|.+|||..=+ +-|-+.--.|+=+-|+||.||+..||..+|.||-.-. -.+.++ ++
T Consensus 238 EVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 238 EVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD 317 (508)
T ss_pred eeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC
Confidence 58899999985422 2233333233445799999999999999999985210 000000 01
Q ss_pred ccC-----------CCccchhhhhhhhhhcccccccCc-ceEEEcCCCceEEEeeeee-eEEEEeeeceeEEEe
Q psy11868 61 KQQ-----------LPNMEFGRRMATERDLEKSEQLSL-SNVLFDDSGFIVLYATMLG-VKFVNIVTNQCVRFI 121 (374)
Q Consensus 61 ~~~-----------~~~~~f~rr~a~e~e~~~~~~~~~-~~~~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~~ 121 (374)
+.+ +-.|.=|+- =||..-. .++ ..+.|-..||.+|-+|-=| |||-+..|.+|+-+.
T Consensus 318 ~SqiLS~sfD~tvRiHGlKSGK~---LKEfrGH--sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf 386 (508)
T KOG0275|consen 318 NSQILSASFDQTVRIHGLKSGKC---LKEFRGH--SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF 386 (508)
T ss_pred cchhhcccccceEEEeccccchh---HHHhcCc--cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc
Confidence 111 222222322 1333322 122 3689999999999887655 899999999987654
No 39
>KOG1408|consensus
Probab=88.51 E-value=0.44 Score=52.46 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=37.0
Q ss_pred CeEeeeecceeee---------------eeccccceeeeeeecCCCCEEEEEeCCceEE
Q psy11868 1 VRVFSFLSGKLTR---------------VYDESLARFAELKLSETEPVRVFSFLSGKLT 44 (374)
Q Consensus 1 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~ 44 (374)
+|+|..-|||.++ .+|||+-+.| |-|+|+.+-+|||.||.++
T Consensus 620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a--tScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA--TSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred eEEEeccccceeeeecccccCCCceEEEEECCCccEEE--EeecCCceEEEEeccchhh
Confidence 5889999998775 4799999998 8899999999999999865
No 40
>PTZ00420 coronin; Provisional
Probab=88.34 E-value=2.2 Score=46.20 Aligned_cols=72 Identities=7% Similarity=0.010 Sum_probs=50.5
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
+.|.+.... |+.|.|+.|||||..+|+....+.- . .....+.|+.
T Consensus 133 f~P~g~~iL-aSgS~DgtIrIWDl~tg~~~~~i~~--------------------------------~--~~V~Slswsp 177 (568)
T PTZ00420 133 WNPMNYYIM-CSSGFDSFVNIWDIENEKRAFQINM--------------------------------P--KKLSSLKWNI 177 (568)
T ss_pred ECCCCCeEE-EEEeCCCeEEEEECCCCcEEEEEec--------------------------------C--CcEEEEEECC
Confidence 445544432 3567899999999999987655421 0 0124678999
Q ss_pred CCceEEEeeeee-eEEEEeeeceeEEEe
Q psy11868 95 SGFIVLYATMLG-VKFVNIVTNQCVRFI 121 (374)
Q Consensus 95 s~~~~~y~t~~g-ikv~n~~t~~~~~~~ 121 (374)
+|++|+-++.=| |++.|+.+++++..+
T Consensus 178 dG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 178 KGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred CCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 999887666433 899999999887765
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=88.06 E-value=2.4 Score=37.13 Aligned_cols=72 Identities=13% Similarity=0.321 Sum_probs=49.4
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
+++.+..++ +.+.|+.|++||..++++.+.+... ......+.|+.
T Consensus 185 ~~~~~~~l~--~~~~~~~i~i~d~~~~~~~~~~~~~---------------------------------~~~i~~~~~~~ 229 (289)
T cd00200 185 FSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGH---------------------------------ENGVNSVAFSP 229 (289)
T ss_pred ECCCcCEEE--EecCCCcEEEEECCCCceecchhhc---------------------------------CCceEEEEEcC
Confidence 455555665 4556999999999998887665310 01234678888
Q ss_pred CCceEEEee-eeeeEEEEeeeceeEEEe
Q psy11868 95 SGFIVLYAT-MLGVKFVNIVTNQCVRFI 121 (374)
Q Consensus 95 s~~~~~y~t-~~gikv~n~~t~~~~~~~ 121 (374)
++++++.++ ---|++.|+.+++....+
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence 888888776 445788888776666554
No 42
>KOG0640|consensus
Probab=87.89 E-value=0.78 Score=46.31 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=63.5
Q ss_pred cceeeee-eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccC
Q psy11868 8 SGKLTRV-YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLS 86 (374)
Q Consensus 8 ~~~~~~~-~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~ 86 (374)
+|-+|.| |.+++.-++ |-|.|+.||+||=-+++.++++-+ ..+...
T Consensus 261 t~ai~~V~Ys~t~~lYv--TaSkDG~IklwDGVS~rCv~t~~~-------------------------------AH~gse 307 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYV--TASKDGAIKLWDGVSNRCVRTIGN-------------------------------AHGGSE 307 (430)
T ss_pred ccceeEEEecCCccEEE--EeccCCcEEeeccccHHHHHHHHh-------------------------------hcCCce
Confidence 3556665 788888888 778999999999999999987744 133344
Q ss_pred cceEEEcCCCceEEEeeee-eeEEEEeeeceeEEEe
Q psy11868 87 LSNVLFDDSGFIVLYATML-GVKFVNIVTNQCVRFI 121 (374)
Q Consensus 87 ~~~~~fd~s~~~~~y~t~~-gikv~n~~t~~~~~~~ 121 (374)
-..++|-.+|+|||-.-|= =+|.-.+-||+++..+
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 5789999999999987542 2688889999998876
No 43
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=87.88 E-value=3.9 Score=37.48 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=43.1
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
++|.+..++ ++.+.|++|++||..++++++.++.. .....+.|+.
T Consensus 80 ~~~~g~~l~-~~~~~~~~l~~~d~~~~~~~~~~~~~----------------------------------~~~~~~~~~~ 124 (300)
T TIGR03866 80 LHPNGKILY-IANEDDNLVTVIDIETRKVLAEIPVG----------------------------------VEPEGMAVSP 124 (300)
T ss_pred ECCCCCEEE-EEcCCCCeEEEEECCCCeEEeEeeCC----------------------------------CCcceEEECC
Confidence 344444343 22335788888888888877655320 0123578999
Q ss_pred CCceEEEeeeee--eEEEEeeeceeEE
Q psy11868 95 SGFIVLYATMLG--VKFVNIVTNQCVR 119 (374)
Q Consensus 95 s~~~~~y~t~~g--ikv~n~~t~~~~~ 119 (374)
+|+++++.+--+ +.+++..++++.+
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 999998877543 4455666666554
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=87.83 E-value=4.1 Score=35.61 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=40.6
Q ss_pred CCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCCCceEEEeeeee-e
Q psy11868 29 ETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSGFIVLYATMLG-V 107 (374)
Q Consensus 29 ~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s~~~~~y~t~~g-i 107 (374)
.|+.|++||..++++...+... ......+.|++.|+.+++++.-| |
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~---------------------------------~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGH---------------------------------TGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred CCCcEEEEEccccccceeEecC---------------------------------ccccceEEECCCcCEEEEecCCCcE
Confidence 4999999999988887766410 01234678889998888777433 5
Q ss_pred EEEEeeeceeEEEe
Q psy11868 108 KFVNIVTNQCVRFI 121 (374)
Q Consensus 108 kv~n~~t~~~~~~~ 121 (374)
++.|+.+++.++.+
T Consensus 202 ~i~d~~~~~~~~~~ 215 (289)
T cd00200 202 KLWDLSTGKCLGTL 215 (289)
T ss_pred EEEECCCCceecch
Confidence 66676665554443
No 45
>KOG0318|consensus
Probab=87.78 E-value=2.1 Score=45.66 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=66.0
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
|.|.++.|| +.++|+||-|||=.||.....++.+- .-..+-.-+-|-.
T Consensus 198 ysPDG~~Fa--t~gsDgki~iyDGktge~vg~l~~~~------------------------------aHkGsIfalsWsP 245 (603)
T KOG0318|consen 198 YSPDGSRFA--TAGSDGKIYIYDGKTGEKVGELEDSD------------------------------AHKGSIFALSWSP 245 (603)
T ss_pred ECCCCCeEE--EecCCccEEEEcCCCccEEEEecCCC------------------------------CccccEEEEEECC
Confidence 788999999 88999999999999999997775411 0001122344553
Q ss_pred -CCceEEEeeeeeeEEEEeeeceeEEEecCCCccccchhh-cccccccccccccchhh
Q psy11868 95 -SGFIVLYATMLGVKFVNIVTNQCVRFIGKPENLRLLHLS-LFQGKVKTRKAATTLEM 150 (374)
Q Consensus 95 -s~~~~~y~t~~gikv~n~~t~~~~~~~g~~e~~r~~~~~-l~q~~~~~~~~~~~~~~ 150 (374)
|.+|+--.-=--+||-+..||+|++.+--.+.+-=.+++ |.| |+ ..+++..
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq----kd-~lItVSl 298 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ----KD-HLITVSL 298 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe----CC-eEEEEEc
Confidence 334444333345899999999999998766654445555 555 22 5566554
No 46
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=86.96 E-value=2.7 Score=38.64 Aligned_cols=69 Identities=13% Similarity=0.266 Sum_probs=49.0
Q ss_pred eeccccceeeeeeec-CCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEE
Q psy11868 14 VYDESLARFAELKLS-ETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLF 92 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~-~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~f 92 (374)
-+.|.+++||.+ .+ .+++|++||.. ++.+..+.. .....+.|
T Consensus 66 ~WsP~g~~favi-~g~~~~~v~lyd~~-~~~i~~~~~-----------------------------------~~~n~i~w 108 (194)
T PF08662_consen 66 AWSPNGNEFAVI-YGSMPAKVTLYDVK-GKKIFSFGT-----------------------------------QPRNTISW 108 (194)
T ss_pred EECcCCCEEEEE-EccCCcccEEEcCc-ccEeEeecC-----------------------------------CCceEEEE
Confidence 368899999933 33 57899999996 777666643 11235889
Q ss_pred cCCCceEEEeeee---e-eEEEEeeeceeEE
Q psy11868 93 DDSGFIVLYATML---G-VKFVNIVTNQCVR 119 (374)
Q Consensus 93 d~s~~~~~y~t~~---g-ikv~n~~t~~~~~ 119 (374)
...|++|+.+.+= | +.+.|..+.+.+.
T Consensus 109 sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~ 139 (194)
T PF08662_consen 109 SPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS 139 (194)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence 9999999988642 3 6788877555543
No 47
>KOG0319|consensus
Probab=86.77 E-value=1.3 Score=48.62 Aligned_cols=120 Identities=23% Similarity=0.339 Sum_probs=87.8
Q ss_pred eEeeeecceeeeeecccccee--eeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhc
Q psy11868 2 RVFSFLSGKLTRVYDESLARF--AELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDL 79 (374)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~ 79 (374)
++-.-|||.-..|+|-+-+.. -+||.|.|.+|+||.+.|.-.+++++- .+-|
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG---------------------H~~a----- 549 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG---------------------HTSA----- 549 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC---------------------ccce-----
Confidence 455678888888998876666 567999999999999999999999963 1111
Q ss_pred ccccccCcceEEEcCCCceEEEeeeee-eEEEEeeeceeEEEecCCCccccchhhcccccccccccccchhhhhccCCcc
Q psy11868 80 EKSEQLSLSNVLFDDSGFIVLYATMLG-VKFVNIVTNQCVRFIGKPENLRLLHLSLFQGKVKTRKAATTLEMEAAKNPTL 158 (374)
Q Consensus 80 ~~~~~~~~~~~~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~~g~~e~~r~~~~~l~q~~~~~~~~~~~~~~~~~~n~~l 158 (374)
-..+.|=..|.+||=+.-=| ||+-|+.||.|.+.|-..++ |.-.++. +|
T Consensus 550 -------Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-rvWaL~~--------------------~~-- 599 (775)
T KOG0319|consen 550 -------VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-RVWALSV--------------------SP-- 599 (775)
T ss_pred -------eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-eeEEEee--------------------cC--
Confidence 13467888889988877666 79999999999998865443 2222211 11
Q ss_pred cccCCCceEEEeeccCceeEEeec
Q psy11868 159 EAIQPDPTLFCTGFNKNRFYLFSR 182 (374)
Q Consensus 159 ~~~~~dp~l~~ta~~k~rfylfs~ 182 (374)
+-..|+||-.-.|+-+|-.
T Consensus 600 -----~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 600 -----LLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred -----ccceeEecCCCeEEEEeec
Confidence 1125888888999999954
No 48
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=86.75 E-value=4 Score=43.36 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=63.3
Q ss_pred eEEEEec-ccchHHHHHHHhhhcCCcc--CCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCCCcceEe
Q psy11868 231 DIHLQLF-KECAKTVENFCVHSKNNYY--NGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVS 307 (374)
Q Consensus 231 ~I~IeLf-d~aPktveNF~~L~k~GyY--~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r~G~VS 307 (374)
-|.|+|| +.||+||.-|.+...-... =-..+|-..++.++-=|++ .++..+-+|+.|.- -..+|.++
T Consensus 376 vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~~~---------~~~k~LiPEN~P~~-~V~ag~Ig 445 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKGNK---------ELAKGLIPENTPED-KVEAGVIG 445 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEeccCc---------hhccccCCCCCCCC-ccccceEe
Confidence 4899999 9999999999877532211 1345555666644443322 22344455544332 23467777
Q ss_pred ecccCC---CCCcceEEE--EcCCCC-CCCCCCeEEEEEEeCHHHHHHHhcC
Q psy11868 308 MANAGP---NTNGSQFFI--TLTPTP-WLDNKHTVFGRVTKGMEVVQNISNV 353 (374)
Q Consensus 308 man~gp---ntngSQFFI--Tl~~~p-~LDgk~tVFGrVieGmdVL~~Ie~~ 353 (374)
+-|... +..|-+|-= -++|+. .+++.+ +.|+|+++++.|.++.+.
T Consensus 446 vTN~a~k~~G~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 446 VTNQACKHVGMIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKEG 496 (503)
T ss_pred eechhhhcCceEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhcccccC
Confidence 776521 111211100 123332 345544 669999999999888754
No 49
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=86.39 E-value=6.5 Score=36.05 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=42.2
Q ss_pred eecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCCCceEEEeeee
Q psy11868 26 KLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSGFIVLYATML 105 (374)
Q Consensus 26 ~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s~~~~~y~t~~ 105 (374)
+.+.+..|.|||..++|+.+.+.. | .....+.|..+|++|+.+.-.
T Consensus 224 ~~~~~~~i~v~d~~~~~~~~~~~~--------------------~--------------~~~~~~~~~~~g~~l~~~~~~ 269 (300)
T TIGR03866 224 ALGPANRVAVVDAKTYEVLDYLLV--------------------G--------------QRVWQLAFTPDEKYLLTTNGV 269 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEEEEe--------------------C--------------CCcceEEECCCCCEEEEEcCC
Confidence 345666788899888888765421 0 012246799999987654321
Q ss_pred --eeEEEEeeeceeEEEe
Q psy11868 106 --GVKFVNIVTNQCVRFI 121 (374)
Q Consensus 106 --gikv~n~~t~~~~~~~ 121 (374)
=|+|+++.+.++++.+
T Consensus 270 ~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 270 SNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCeEEEEECCCCcEEEEE
Confidence 2899999999987776
No 50
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=86.35 E-value=0.64 Score=30.67 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.0
Q ss_pred eccccceeeeeeecCCCCEEEEE
Q psy11868 15 YDESLARFAELKLSETEPVRVFS 37 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~ 37 (374)
+.|.+..+| +.|.|++|||||
T Consensus 19 ~~~~~~~~~--s~~~D~~i~vwd 39 (39)
T PF00400_consen 19 WSPDGNFLA--SGSSDGTIRVWD 39 (39)
T ss_dssp EETTSSEEE--EEETTSEEEEEE
T ss_pred Eecccccce--eeCCCCEEEEEC
Confidence 677778887 788999999997
No 51
>KOG0291|consensus
Probab=86.06 E-value=4 Score=45.40 Aligned_cols=94 Identities=21% Similarity=0.220 Sum_probs=71.2
Q ss_pred CeEeeeecceeeeeecccc----------ceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchh
Q psy11868 1 VRVFSFLSGKLTRVYDESL----------ARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFG 70 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~ 70 (374)
|+||.-.||--..-++|-- .+-++.+.|-|++||.||+.-++-+|+|--
T Consensus 374 VKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~--------------------- 432 (893)
T KOG0291|consen 374 VKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS--------------------- 432 (893)
T ss_pred EEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC---------------------
Confidence 5677777776655555532 233434555799999999999999999932
Q ss_pred hhhhhhhhcccccccCcceEEEcCCCceEEEeee--eeeEEEEeeeceeEEEecCCCc
Q psy11868 71 RRMATERDLEKSEQLSLSNVLFDDSGFIVLYATM--LGVKFVNIVTNQCVRFIGKPEN 126 (374)
Q Consensus 71 rr~a~e~e~~~~~~~~~~~~~fd~s~~~~~y~t~--~gikv~n~~t~~~~~~~g~~e~ 126 (374)
++.....-+.=|.||..+.-++. +-|+|...+||++.-||--.|.
T Consensus 433 -----------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg 479 (893)
T KOG0291|consen 433 -----------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG 479 (893)
T ss_pred -----------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC
Confidence 33344567778999999988874 7899999999999999977774
No 52
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=85.77 E-value=2 Score=38.83 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=51.3
Q ss_pred eEEEEec-ccchHHHHHHHhhhcCCccCCcEEEEEEcC--eEEeeCCCCCCCCCCccccCCCCcccccCCCCCCCcceEe
Q psy11868 231 DIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKG--FMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVS 307 (374)
Q Consensus 231 ~I~IeLf-d~aPktveNF~~L~k~GyY~gt~FhRVi~~--f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r~G~VS 307 (374)
.++.+|. +.||+||+.|.++- =|.+..+|-..-+ .++.-|+.... ...-|++ -.|..||-|.
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~L---P~~~~~~HarwSG~ei~~~l~~~~~~----------~~~~EN~--T~~P~pGdi~ 73 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEAL---PLKGKVIHARWSGEEIWIPLPDFDPF----------EPGRENH--TVTPIPGDIL 73 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH-----EEEE-EE-SSSSSEEEEEEE--SSS-------------S-SE--ESS--TTEEE
T ss_pred EEEEEEcccCChHHHHHHHHhC---CCCCcEEEEEEECcEEEEECCCcCcC----------CCCCCcC--cccCCCCcEE
Confidence 4788898 99999999998775 2445555544433 34444543211 1122332 2344566666
Q ss_pred ec-------ccCCC-CCcceEEEEcC------CCCCCCCCCeEEEEEEeCHHHHHHHhc
Q psy11868 308 MA-------NAGPN-TNGSQFFITLT------PTPWLDNKHTVFGRVTKGMEVVQNISN 352 (374)
Q Consensus 308 ma-------n~gpn-tngSQFFITl~------~~p~LDgk~tVFGrVieGmdVL~~Ie~ 352 (374)
+. +..|+ -+...+|+-.+ +.-|+-+ .+|++|++|+|-+.++.+
T Consensus 74 ~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 74 LYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR 130 (147)
T ss_dssp EE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred EEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence 65 11122 12334444332 3334444 579999999998877643
No 53
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=1.7 Score=45.02 Aligned_cols=98 Identities=18% Similarity=0.317 Sum_probs=63.7
Q ss_pred eEEEEecccchHHHHHHHhhhcCCc----cCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCCCCcceE
Q psy11868 231 DIHLQLFKECAKTVENFCVHSKNNY----YNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTV 306 (374)
Q Consensus 231 ~I~IeLfd~aPktveNF~~L~k~Gy----Y~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r~G~V 306 (374)
.+.++|...+|+++++|+.+.+.|- |+-.+| .+-++.-+.+.+.|+ ..+ -..|.+
T Consensus 204 y~eve~s~nsP~saEH~lalmedG~lri~~~tntf------------------is~~~lq~~~~~~en-~d~--RerG~i 262 (512)
T COG4070 204 YFEVELSRNSPKSAEHFLALMEDGTLRIDVTTNTF------------------ISDDTLQEEKVPEEN-FDL--RERGAI 262 (512)
T ss_pred EEEEEeCCCCchhHHHHHHHhhcceEEEEEeccce------------------eeccccccccCChhh-hhh--hhcceE
Confidence 3677877889999999999998873 222222 111223344555554 222 235899
Q ss_pred eecccCCCCCcceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhc
Q psy11868 307 SMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISN 352 (374)
Q Consensus 307 Sman~gpntngSQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~ 352 (374)
+..|.|-++ -.-||--.+-+. --.|+|.|||++||+.++--++
T Consensus 263 TvRn~Gvge--GrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 263 TVRNVGVGE--GRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred EEEeeeccc--ceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence 999986542 357776665442 2358999999999999876554
No 54
>PTZ00421 coronin; Provisional
Probab=84.62 E-value=4 Score=43.28 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=50.6
Q ss_pred ecccc-ceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEc
Q psy11868 15 YDESL-ARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFD 93 (374)
Q Consensus 15 ~~~~~-~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd 93 (374)
+.|+. ..+| +-+.|+.|||||+.+|+..+.+.. . ...-..+.|.
T Consensus 133 f~P~~~~iLa--Sgs~DgtVrIWDl~tg~~~~~l~~--------------------------------h-~~~V~sla~s 177 (493)
T PTZ00421 133 FHPSAMNVLA--SAGADMVVNVWDVERGKAVEVIKC--------------------------------H-SDQITSLEWN 177 (493)
T ss_pred eCcCCCCEEE--EEeCCCEEEEEECCCCeEEEEEcC--------------------------------C-CCceEEEEEE
Confidence 44544 3444 667899999999999998766531 0 0112356788
Q ss_pred CCCceEEEeeeee-eEEEEeeeceeEEEe
Q psy11868 94 DSGFIVLYATMLG-VKFVNIVTNQCVRFI 121 (374)
Q Consensus 94 ~s~~~~~y~t~~g-ikv~n~~t~~~~~~~ 121 (374)
.+|+.|+.++.=| |++.|+.+++++..+
T Consensus 178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred CCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 8899888887654 889999988887665
No 55
>KOG0316|consensus
Probab=83.52 E-value=1.2 Score=43.58 Aligned_cols=47 Identities=30% Similarity=0.564 Sum_probs=35.5
Q ss_pred CeEeeeecceeeeee--------ccc----cceeeeeeecCCCCEEEEEeCCceEEEEeec
Q psy11868 1 VRVFSFLSGKLTRVY--------DES----LARFAELKLSETEPVRVFSFLSGKLTRVYDE 49 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~--------~~~----~~~~~~~~~~~d~~ir~f~~~tgkl~~~~de 49 (374)
||.|.-++|.|-+-| |-. -++|| ..+-||.|.+||..|||..|.+--
T Consensus 41 vrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~--s~GgDk~v~vwDV~TGkv~Rr~rg 99 (307)
T KOG0316|consen 41 VRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFA--SCGGDKAVQVWDVNTGKVDRRFRG 99 (307)
T ss_pred EEeecccccceeeeecCCCceeeeccccccccccc--cCCCCceEEEEEcccCeeeeeccc
Confidence 577777888776544 332 24566 677899999999999999998843
No 56
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=83.46 E-value=9.9 Score=34.91 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=53.1
Q ss_pred Eeeeeccee-eeeeccccceeeeeeec-CCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcc
Q psy11868 3 VFSFLSGKL-TRVYDESLARFAELKLS-ETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLE 80 (374)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~ 80 (374)
+++|-.+.. +--+.|.|..+|++.++ ..+.|++||..+.|.+..++..
T Consensus 95 i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~------------------------------ 144 (194)
T PF08662_consen 95 IFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS------------------------------ 144 (194)
T ss_pred eEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC------------------------------
Confidence 455555444 34578999999866555 3578999999999988666431
Q ss_pred cccccCcceEEEcCCCceEEEeeee-------eeEEEEe
Q psy11868 81 KSEQLSLSNVLFDDSGFIVLYATML-------GVKFVNI 112 (374)
Q Consensus 81 ~~~~~~~~~~~fd~s~~~~~y~t~~-------gikv~n~ 112 (374)
....+.|+.+|++++..+-. |+++.+.
T Consensus 145 -----~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 145 -----DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred -----cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 12467899999999988753 5666664
No 57
>PRK00969 hypothetical protein; Provisional
Probab=82.08 E-value=7.8 Score=41.34 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=68.7
Q ss_pred ceEEEeEeceeEEEEecccchHHHHHHHhhhcCCccCCcEEEEEEcCeEEeeCCCCCCCCCCccccCCCCcccccCCCCC
Q psy11868 221 DSAIIHTSMGDIHLQLFKECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKH 300 (374)
Q Consensus 221 d~vi~~Tt~G~I~IeLfd~aPktveNF~~L~k~GyY~gt~FhRVi~~f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH 300 (374)
....+.|+.|.|+|+|- ..+.++.-+...++. |.|...|=--++ -+-.|-.. ..++.+. ....+
T Consensus 51 ~~y~IkTtkG~i~Iel~-~~~~~~~~w~e~yk~--~e~~~i~W~s~~-~vAfGp~~-----------s~l~p~~-~~~~y 114 (508)
T PRK00969 51 KKYRIKTTKGEIVIELT-EENESVDFWLENYKE--FEGKSLRWTSRS-AVAFGPFE-----------SDLEPSR-EEYEY 114 (508)
T ss_pred ceEEEEccCceEEEEEc-cCcchhhHHHHhHHh--hcCCceEecccc-ceeEcccc-----------cCccccc-Cccee
Confidence 34678899999999999 444556666665554 455555433222 23333221 1122111 11223
Q ss_pred CCcceEeecccCCCCCcceEEEEcCCCC---CCCCCCeEEEEEEeCHHHHHHHhcC
Q psy11868 301 DRPYTVSMANAGPNTNGSQFFITLTPTP---WLDNKHTVFGRVTKGMEVVQNISNV 353 (374)
Q Consensus 301 ~r~G~VSman~gpntngSQFFITl~~~p---~LDgk~tVFGrVieGmdVL~~Ie~~ 353 (374)
.++-|.+.-+|-+...+.+-|...+.. -+.+. -+||+|+.|..+|+++.+.
T Consensus 115 -~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~-gv~grVi~Gk~vl~~L~~~ 168 (508)
T PRK00969 115 -ERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPND-GVIGRVVGGKRVLDRLTDG 168 (508)
T ss_pred -ecccEEEEccCCCCCCceEEEEecchhhhhCCCCC-CceEEEccchhhHhhccCC
Confidence 346788888877777777777665432 11122 7999999999999999753
No 58
>PTZ00421 coronin; Provisional
Probab=81.80 E-value=7.4 Score=41.27 Aligned_cols=31 Identities=6% Similarity=0.133 Sum_probs=24.9
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEe
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
+.+.+..+| +.|.|++|||||..+|+.+..+
T Consensus 176 ~spdG~lLa--tgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 176 WNLDGSLLC--TTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred EECCCCEEE--EecCCCEEEEEECCCCcEEEEE
Confidence 345566666 7779999999999999988765
No 59
>KOG0285|consensus
Probab=81.69 E-value=1.7 Score=44.55 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=26.8
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEee
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYD 48 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~d 48 (374)
.||+-+-|| +-|.||.|.|||.+||||.-++-
T Consensus 159 vdP~n~wf~--tgs~DrtikIwDlatg~Lkltlt 190 (460)
T KOG0285|consen 159 VDPGNEWFA--TGSADRTIKIWDLATGQLKLTLT 190 (460)
T ss_pred eCCCceeEE--ecCCCceeEEEEcccCeEEEeec
Confidence 588866666 77789999999999999987764
No 60
>KOG4547|consensus
Probab=81.17 E-value=8.3 Score=41.44 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=67.4
Q ss_pred Eeeeecceeeeeec-----------c-ccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchh
Q psy11868 3 VFSFLSGKLTRVYD-----------E-SLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFG 70 (374)
Q Consensus 3 ~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~ 70 (374)
.+|-++|+||+-+- - +.+..-+.+.+.|.+|-.|++.+++++|..-|.-
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~------------------- 144 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK------------------- 144 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC-------------------
Confidence 46667777776553 1 1122222345589999999999999999997721
Q ss_pred hhhhhhhhcccccccCcceEEEcCCCceEE--EeeeeeeEEEEeeeceeEEEecC-CCccccchhh-cccc
Q psy11868 71 RRMATERDLEKSEQLSLSNVLFDDSGFIVL--YATMLGVKFVNIVTNQCVRFIGK-PENLRLLHLS-LFQG 137 (374)
Q Consensus 71 rr~a~e~e~~~~~~~~~~~~~fd~s~~~~~--y~t~~gikv~n~~t~~~~~~~g~-~e~~r~~~~~-l~q~ 137 (374)
....+++.-..|..|+ |.+ |||+|+.|.++++..-- ....|-+.+. ++||
T Consensus 145 --------------~~~~sl~is~D~~~l~~as~~---ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 145 --------------PLVSSLCISPDGKILLTASRQ---IKVLDIETKEVVITFTGHGSPVRTLSFTTLIDG 198 (541)
T ss_pred --------------CccceEEEcCCCCEEEeccce---EEEEEccCceEEEEecCCCcceEEEEEEEeccc
Confidence 2356888888899999 555 89999999999987643 3234444433 3354
No 61
>KOG0275|consensus
Probab=81.11 E-value=0.84 Score=46.30 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=52.7
Q ss_pred eeeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHH---hccCCCccchhhhhhhhhhcccccccCcc
Q psy11868 12 TRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQK---AKQQLPNMEFGRRMATERDLEKSEQLSLS 88 (374)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~---~~~~~~~~~f~rr~a~e~e~~~~~~~~~~ 88 (374)
-+++.|.+++.+ +-|-|+-|-||||-||||.+-+. |+...+ +...+--|.
T Consensus 218 cA~FSPDgqyLv--sgSvDGFiEVWny~~GKlrKDLk-----YQAqd~fMMmd~aVlci~-------------------- 270 (508)
T KOG0275|consen 218 CARFSPDGQYLV--SGSVDGFIEVWNYTTGKLRKDLK-----YQAQDNFMMMDDAVLCIS-------------------- 270 (508)
T ss_pred heeeCCCCceEe--eccccceeeeehhccchhhhhhh-----hhhhcceeecccceEEEe--------------------
Confidence 467888888887 66789999999999999987541 111000 001122234
Q ss_pred eEEEcCCCceEEEeeeee-eEEEEeeeceeEEEecC
Q psy11868 89 NVLFDDSGFIVLYATMLG-VKFVNIVTNQCVRFIGK 123 (374)
Q Consensus 89 ~~~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~~g~ 123 (374)
|-+.+.+|.-++.=| |||-.+.||.|+|-.-+
T Consensus 271 ---FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr 303 (508)
T KOG0275|consen 271 ---FSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR 303 (508)
T ss_pred ---ecccHHHhhccCcCCcEEEEEEecchHHHHhhh
Confidence 444444444444433 99999999999986543
No 62
>KOG0282|consensus
Probab=80.10 E-value=0.51 Score=49.54 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=34.9
Q ss_pred eeeecceeeeeec--cccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHH
Q psy11868 4 FSFLSGKLTRVYD--ESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARF 54 (374)
Q Consensus 4 ~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~ 54 (374)
.+|-+|++..+.- |+..... .+=.+|.+||-||..+||+++.||+-|..+
T Consensus 294 ~~f~~~~~~~cvkf~pd~~n~f-l~G~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 294 SRFHLDKVPTCVKFHPDNQNIF-LVGGSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred EEEecCCCceeeecCCCCCcEE-EEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 4566777766653 3432222 123389999999999999999999977543
No 63
>KOG0649|consensus
Probab=79.42 E-value=3.6 Score=40.55 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=32.0
Q ss_pred eeeecceeeeeeccccceeeee----------eecCCCCEEEEEeCCceEEEEe
Q psy11868 4 FSFLSGKLTRVYDESLARFAEL----------KLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
++.-+|+++|+|----++.-.+ +=+.|+.+||||.+|+|-..++
T Consensus 141 ~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 141 VDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred EEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence 4566899999986443333211 2347999999999999999877
No 64
>KOG1539|consensus
Probab=78.75 E-value=3.6 Score=46.00 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=46.7
Q ss_pred CeEeeeecceeeeeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcc
Q psy11868 1 VRVFSFLSGKLTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLE 80 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~ 80 (374)
||-|.=-++++|..-=.+-.+|- ++.|-|.+||+||..||+|+-.+- ++
T Consensus 569 vR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlpt~~lID~~~--------------------------vd---- 617 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLPTGTLIDGLL--------------------------VD---- 617 (910)
T ss_pred hHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEeccCcceeeeEe--------------------------cC----
Confidence 45566667888874323333443 566789999999999999995441 11
Q ss_pred cccccCcceEEEcCCCceEEEee
Q psy11868 81 KSEQLSLSNVLFDDSGFIVLYAT 103 (374)
Q Consensus 81 ~~~~~~~~~~~fd~s~~~~~y~t 103 (374)
....|+-|-++|.||.=..
T Consensus 618 ----~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 618 ----SPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred ----CcceeeEECCCCCEEEEEE
Confidence 1346889999999987553
No 65
>KOG0305|consensus
Probab=77.68 E-value=3.6 Score=43.75 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=54.0
Q ss_pred CCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcce--EEEcCCCceEEEeeeee
Q psy11868 29 ETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSN--VLFDDSGFIVLYATMLG 106 (374)
Q Consensus 29 ~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~--~~fd~s~~~~~y~t~~g 106 (374)
.||+||+||..||++++..|. +.|+-.+-|.++ .+||-..-..+ .| .+|+ ||||-=
T Consensus 366 ~D~~i~fwn~~~g~~i~~vdt-----------gsQVcsL~Wsk~---~kEi~sthG~s-~n~i~lw~-------~ps~~~ 423 (484)
T KOG0305|consen 366 ADRCIKFWNTNTGARIDSVDT-----------GSQVCSLIWSKK---YKELLSTHGYS-ENQITLWK-------YPSMKL 423 (484)
T ss_pred cccEEEEEEcCCCcEeccccc-----------CCceeeEEEcCC---CCEEEEecCCC-CCcEEEEe-------ccccce
Confidence 799999999999999999998 557788888887 47776532222 22 2333 555432
Q ss_pred eEEEEeeec-----------eeEEEecCCCccccchhhcc
Q psy11868 107 VKFVNIVTN-----------QCVRFIGKPENLRLLHLSLF 135 (374)
Q Consensus 107 ikv~n~~t~-----------~~~~~~g~~e~~r~~~~~l~ 135 (374)
+-.+--++. +-+-+.+.+|++||.++-=.
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 222222232 33445566778888776543
No 66
>KOG0303|consensus
Probab=76.44 E-value=1.7 Score=44.97 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=24.2
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEE
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLT 44 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~ 44 (374)
+.-.|++++ |.|.|+||||||-.+|++.
T Consensus 181 fn~dGs~l~--TtckDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 181 FNRDGSLLC--TTCKDKKVRVIDPRRGTVV 208 (472)
T ss_pred eccCCceee--eecccceeEEEcCCCCcEe
Confidence 344577887 8999999999999999998
No 67
>KOG0274|consensus
Probab=76.44 E-value=11 Score=40.67 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=66.0
Q ss_pred ceeeeeeccccceeeeeeecCCCCEEEEEeCCceEEEEee---chhHHHHHHHH---hc---c--CCCccchhhhhhhhh
Q psy11868 9 GKLTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYD---ESLARFADLQK---AK---Q--QLPNMEFGRRMATER 77 (374)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~d---es~~~~~~~~~---~~---~--~~~~~~f~rr~a~e~ 77 (374)
|-+.+++=++++..- .+-|.|+++||||..||+..+++- +++..+.+.+- .+ . ++=+++=|..+.+.+
T Consensus 250 g~V~~l~~~~~~~~l-vsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~ 328 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKL-VSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLR 328 (537)
T ss_pred CCceeEEEecCCCEE-EEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEec
Confidence 455566555544433 478889999999988998888875 44333322211 00 0 122333344444433
Q ss_pred hcccccccCcceEEEcCCCceEEEeeeee-eEEEEeeeceeEEEecC
Q psy11868 78 DLEKSEQLSLSNVLFDDSGFIVLYATMLG-VKFVNIVTNQCVRFIGK 123 (374)
Q Consensus 78 e~~~~~~~~~~~~~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~~g~ 123 (374)
. -. ..-..+..+ +.+++-+|.=| |||.++.|++|++.+-.
T Consensus 329 ~--h~--~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g 369 (537)
T KOG0274|consen 329 G--HT--GPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG 369 (537)
T ss_pred c--cc--ccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC
Confidence 2 00 111244555 88999999999 99999999999999865
No 68
>KOG0771|consensus
Probab=76.24 E-value=11 Score=39.13 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=45.3
Q ss_pred ccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCC
Q psy11868 16 DESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDS 95 (374)
Q Consensus 16 ~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s 95 (374)
..++...| |-+.|+++|||++.+... ..+.++ -++|++ -+-|-++
T Consensus 153 ~~~gs~la--tgg~dg~lRv~~~Ps~~t----------~l~e~~---------------~~~eV~--------DL~FS~d 197 (398)
T KOG0771|consen 153 NGDGSKLA--TGGTDGTLRVWEWPSMLT----------ILEEIA---------------HHAEVK--------DLDFSPD 197 (398)
T ss_pred cCCCCEee--eccccceEEEEecCcchh----------hhhhHh---------------hcCccc--------cceeCCC
Confidence 34445555 777888888887765443 333333 334443 2347788
Q ss_pred CceEEEeeeeeeEEEEeeeceeEEEec
Q psy11868 96 GFIVLYATMLGVKFVNIVTNQCVRFIG 122 (374)
Q Consensus 96 ~~~~~y~t~~gikv~n~~t~~~~~~~g 122 (374)
|.||.|-+-=+-.|.+..++-.+--.+
T Consensus 198 gk~lasig~d~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 198 GKFLASIGADSARVWSVNTGAALARKT 224 (398)
T ss_pred CcEEEEecCCceEEEEeccCchhhhcC
Confidence 899988777778888888884444433
No 69
>PTZ00420 coronin; Provisional
Probab=74.40 E-value=4.8 Score=43.59 Aligned_cols=32 Identities=0% Similarity=0.039 Sum_probs=27.1
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEee
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYD 48 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~d 48 (374)
+++.+..+| +.|.|++|||||..+|+++..+.
T Consensus 175 wspdG~lLa--t~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 175 WNIKGNLLS--GTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred ECCCCCEEE--EEecCCEEEEEECCCCcEEEEEe
Confidence 577788887 66789999999999999988763
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=74.38 E-value=18 Score=40.07 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=22.5
Q ss_pred ccceeeeeeecCCCCEEEEEeCCceEEEEe
Q psy11868 18 SLARFAELKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 18 ~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
.++.++ +.|.|+.|||||+.+|+.+..+
T Consensus 587 ~~~~L~--Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 587 DPTLLA--SGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred CCCEEE--EEcCCCEEEEEECCCCcEEEEE
Confidence 345565 6778999999999999887666
No 71
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=74.14 E-value=12 Score=38.92 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=56.6
Q ss_pred eEEEEec-ccchHHHHHHHhhhcCC--ccCCcEEEEEEcC--eEEeeCCCCCCCCCCccccCCCCcccccCCCCCCCcce
Q psy11868 231 DIHLQLF-KECAKTVENFCVHSKNN--YYNGHIFHRVIKG--FMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYT 305 (374)
Q Consensus 231 ~I~IeLf-d~aPktveNF~~L~k~G--yY~gt~FhRVi~~--f~IQgGDp~g~GtgG~si~G~~f~dE~~~~LkH~r~G~ 305 (374)
-|.|||| +.||+++.-|.....-. ---....|-..++ .+.--|++ .++.....|+.|.- ...+|.
T Consensus 377 iieIELyed~APrSv~yFRr~t~l~~kpVGkL~Vhfay~d~~~vmfegn~---------~~~K~llPEN~P~d-~Ve~g~ 446 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTGLKTKPVGKLKVHFAYDDTYLVMFEGNA---------VLAKGLLPENTPAD-TVEAGE 446 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcccccccccceEEEEEeCCceEEEEcCCh---------HHhccCCCCCCchh-heeccc
Confidence 3899999 99999999998765311 1123456666666 22222332 22334444443321 112233
Q ss_pred EeecccC---CCCCc-----ceEEEEcCCCCCCCCCCeEEEEEEeCHHHHHHHhcC
Q psy11868 306 VSMANAG---PNTNG-----SQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNV 353 (374)
Q Consensus 306 VSman~g---pntng-----SQFFITl~~~p~LDgk~tVFGrVieGmdVL~~Ie~~ 353 (374)
++.-|.. -+..| |.- ++|+-.-=.+--++|+|++|.+-|..|...
T Consensus 447 iGvTN~a~r~~GmIGVRL~dsde---fGPTGE~Fe~TNiIGrIveg~e~l~~ikeG 499 (512)
T COG4070 447 IGVTNQAARHMGMIGVRLEDSDE---FGPTGEKFEGTNIIGRIVEGPERLIGIKEG 499 (512)
T ss_pred ccccccchhccceeEEEeccccc---cCCCCCccccceeehhhccChHHhcccccC
Confidence 3332221 01111 111 122221123445789999999999888764
No 72
>KOG1446|consensus
Probab=73.40 E-value=34 Score=34.48 Aligned_cols=122 Identities=14% Similarity=0.276 Sum_probs=75.8
Q ss_pred ecceeeeeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccC
Q psy11868 7 LSGKLTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLS 86 (374)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~ 86 (374)
++|.--+-|||+|--||. .+....|++||.+ .||+---.- ..+.. .+...
T Consensus 140 ~~~~pi~AfDp~GLifA~--~~~~~~IkLyD~R------s~dkgPF~t-------f~i~~---------------~~~~e 189 (311)
T KOG1446|consen 140 LSGRPIAAFDPEGLIFAL--ANGSELIKLYDLR------SFDKGPFTT-------FSITD---------------NDEAE 189 (311)
T ss_pred cCCCcceeECCCCcEEEE--ecCCCeEEEEEec------ccCCCCcee-------EccCC---------------CCccc
Confidence 466667789999999983 3333389999864 455410000 01111 22234
Q ss_pred cceEEEcCCCceEEEeeeee-eEEEEeeeceeEEEecCCCccccchhhcccccccccccccchhhhhccCCcccccCCCc
Q psy11868 87 LSNVLFDDSGFIVLYATMLG-VKFVNIVTNQCVRFIGKPENLRLLHLSLFQGKVKTRKAATTLEMEAAKNPTLEAIQPDP 165 (374)
Q Consensus 87 ~~~~~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~~g~~e~~r~~~~~l~q~~~~~~~~~~~~~~~~~~n~~l~~~~~dp 165 (374)
+..+-|-..|++||-.|.-| |.+++-.+|.+.-. ++.++ ..+ .+ |+-.--.+|-
T Consensus 190 w~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t-----------fs~~~---~~~--~~---------~~~a~ftPds 244 (311)
T KOG1446|consen 190 WTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST-----------FSGYP---NAG--NL---------PLSATFTPDS 244 (311)
T ss_pred eeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee-----------Eeecc---CCC--Cc---------ceeEEECCCC
Confidence 67888999999999999887 78888777773221 12222 111 11 1111124788
Q ss_pred eEEEeeccCceeEEeecC
Q psy11868 166 TLFCTGFNKNRFYLFSRR 183 (374)
Q Consensus 166 ~l~~ta~~k~rfylfs~~ 183 (374)
..|.++....|.+++.-+
T Consensus 245 ~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred cEEEEecCCCcEEEEEcC
Confidence 899999999999999763
No 73
>KOG0283|consensus
Probab=73.08 E-value=20 Score=39.83 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=67.9
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
+.|--++|. +.=|-|.|||||++.--|+.--+|= +. --.-++|-.
T Consensus 417 FnPvDDryF-iSGSLD~KvRiWsI~d~~Vv~W~Dl--------~~--------------------------lITAvcy~P 461 (712)
T KOG0283|consen 417 FNPVDDRYF-ISGSLDGKVRLWSISDKKVVDWNDL--------RD--------------------------LITAVCYSP 461 (712)
T ss_pred ecccCCCcE-eecccccceEEeecCcCeeEeehhh--------hh--------------------------hheeEEecc
Confidence 456666665 2334699999999998887744432 10 124678999
Q ss_pred CCceEEEeeeeeeE-EEEeeeceeEEEecCCCccccchhhcccccccccccccchhhhhccCCcccccCCCc--eEEEee
Q psy11868 95 SGFIVLYATMLGVK-FVNIVTNQCVRFIGKPENLRLLHLSLFQGKVKTRKAATTLEMEAAKNPTLEAIQPDP--TLFCTG 171 (374)
Q Consensus 95 s~~~~~y~t~~gik-v~n~~t~~~~~~~g~~e~~r~~~~~l~q~~~~~~~~~~~~~~~~~~n~~l~~~~~dp--~l~~ta 171 (374)
.|++.|-||+-|.. ++++.-++++-- .++.+-+++.++. .+||- +|-...+| +||.|+
T Consensus 462 dGk~avIGt~~G~C~fY~t~~lk~~~~---------~~I~~~~~Kk~~~-~rITG---------~Q~~p~~~~~vLVTSn 522 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGLKLVSD---------FHIRLHNKKKKQG-KRITG---------LQFFPGDPDEVLVTSN 522 (712)
T ss_pred CCceEEEEEeccEEEEEEccCCeEEEe---------eeEeeccCccccC-ceeee---------eEecCCCCCeEEEecC
Confidence 99999999998854 455555554432 2566766654444 24441 22222344 666665
Q ss_pred ccCceeEEeec
Q psy11868 172 FNKNRFYLFSR 182 (374)
Q Consensus 172 ~~k~rfylfs~ 182 (374)
-.|.-+|..
T Consensus 523 --DSrIRI~d~ 531 (712)
T KOG0283|consen 523 --DSRIRIYDG 531 (712)
T ss_pred --CCceEEEec
Confidence 455556655
No 74
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=71.12 E-value=3.9 Score=43.16 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=26.1
Q ss_pred cceeeeeeecCCCCEEEEEeCCceEEEEeech
Q psy11868 19 LARFAELKLSETEPVRVFSFLSGKLTRVYDES 50 (374)
Q Consensus 19 ~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des 50 (374)
.+.++ +++|.|+++||||..||+++++.|=.
T Consensus 229 ~~~~l-~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFL-FTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEE-EEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEE-EEEeCCCeEEEEECCCCeEEEEeccc
Confidence 34454 57999999999999999999998875
No 75
>smart00029 GASTRIN gastrin / cholecystokinin / caerulein family. This family gathers small proteins of about 100 130 amino acids that act as hormones, among them gastrin, cholecystokinin and preprocaerulein which stimulate gastric, biliary, and pancreatic secretion and smooth muscle contraction.
Probab=70.58 E-value=1.3 Score=28.33 Aligned_cols=14 Identities=50% Similarity=0.907 Sum_probs=10.6
Q ss_pred cchhhhhhhhhhcc
Q psy11868 67 MEFGRRMATERDLE 80 (374)
Q Consensus 67 ~~f~rr~a~e~e~~ 80 (374)
||||||.|-|-+..
T Consensus 3 MDFGRRsaEd~~~~ 16 (26)
T smart00029 3 MDFGRRSAEDDDXX 16 (26)
T ss_pred cccccccccccccc
Confidence 89999987665443
No 76
>KOG0316|consensus
Probab=69.47 E-value=4.2 Score=39.90 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=27.6
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEee
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYD 48 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~d 48 (374)
|.-.|++-- |+++||.||+|+-+.|-|+++|-
T Consensus 25 yN~dGnY~l--tcGsdrtvrLWNp~rg~liktYs 56 (307)
T KOG0316|consen 25 YNVDGNYCL--TCGSDRTVRLWNPLRGALIKTYS 56 (307)
T ss_pred EccCCCEEE--EcCCCceEEeecccccceeeeec
Confidence 666677655 77899999999999999999994
No 77
>PLN00181 protein SPA1-RELATED; Provisional
Probab=68.95 E-value=62 Score=35.89 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=62.8
Q ss_pred eeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC-CCceEEEee
Q psy11868 25 LKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD-SGFIVLYAT 103 (374)
Q Consensus 25 ~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~-s~~~~~y~t 103 (374)
|+.+.|+.|||||..+|++++.+.+- ...-..+.|.. .|++|+=++
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H---------------------------------~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEH---------------------------------EKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCC---------------------------------CCCEEEEEEcCCCCCEEEEEc
Confidence 36778999999999999988776330 01123566875 567777666
Q ss_pred eee-eEEEEeeeceeEEEecCCCccccchhhcccccccccccccchhhhhccCCcccccCCCceEEEeeccCceeEEeec
Q psy11868 104 MLG-VKFVNIVTNQCVRFIGKPENLRLLHLSLFQGKVKTRKAATTLEMEAAKNPTLEAIQPDPTLFCTGFNKNRFYLFSR 182 (374)
Q Consensus 104 ~~g-ikv~n~~t~~~~~~~g~~e~~r~~~~~l~q~~~~~~~~~~~~~~~~~~n~~l~~~~~dp~l~~ta~~k~rfylfs~ 182 (374)
.=| |++.|+.+++++..+.... ....+. -...+..++++|...+.+++|.-
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~~~------------------~v~~v~----------~~~~~g~~latgs~dg~I~iwD~ 647 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKTKA------------------NICCVQ----------FPSESGRSLAFGSADHKVYYYDL 647 (793)
T ss_pred CCCEEEEEECCCCcEEEEEecCC------------------CeEEEE----------EeCCCCCEEEEEeCCCeEEEEEC
Confidence 544 8888988877765542110 011100 00124567888888899999976
Q ss_pred CC
Q psy11868 183 RE 184 (374)
Q Consensus 183 ~~ 184 (374)
+.
T Consensus 648 ~~ 649 (793)
T PLN00181 648 RN 649 (793)
T ss_pred CC
Confidence 54
No 78
>KOG0286|consensus
Probab=68.70 E-value=23 Score=35.68 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=57.5
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
|=|+|..|| |-|.|...|+||++...=+-+|. .| +....-..+-|--
T Consensus 237 ffP~G~afa--tGSDD~tcRlyDlRaD~~~a~ys----------------------------~~---~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 237 FFPSGDAFA--TGSDDATCRLYDLRADQELAVYS----------------------------HD---SIICGITSVAFSK 283 (343)
T ss_pred EccCCCeee--ecCCCceeEEEeecCCcEEeeec----------------------------cC---cccCCceeEEEcc
Confidence 568888887 88899999999999977666663 11 1122346788999
Q ss_pred CCceEEEe-eeeeeEEEEeeeceeEEEecCCCc
Q psy11868 95 SGFIVLYA-TMLGVKFVNIVTNQCVRFIGKPEN 126 (374)
Q Consensus 95 s~~~~~y~-t~~gikv~n~~t~~~~~~~g~~e~ 126 (374)
||.+|+-+ .=.++-|-+.-.++.+-+|.-.||
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN 316 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN 316 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCC
Confidence 99988763 445677777777888777776665
No 79
>KOG1539|consensus
Probab=67.35 E-value=7.6 Score=43.60 Aligned_cols=107 Identities=15% Similarity=0.280 Sum_probs=72.2
Q ss_pred cce-eeeeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhcc-------------CCCccchhhhh
Q psy11868 8 SGK-LTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQ-------------QLPNMEFGRRM 73 (374)
Q Consensus 8 ~~~-~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~-------------~~~~~~f~rr~ 73 (374)
.|+ +|++.-||-=-.-.+.-+.++.+.+|++.|||++.+|.|.-..++.++|++. .+=++-|+.++
T Consensus 158 ~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 158 EGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL 237 (910)
T ss_pred cCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE
Confidence 455 8888888865555334468999999999999999999999999999999874 13345555442
Q ss_pred hhhhhcccccccCcceEEEcCCCceEEEe-eeee-eEEEEeeeceeE
Q psy11868 74 ATERDLEKSEQLSLSNVLFDDSGFIVLYA-TMLG-VKFVNIVTNQCV 118 (374)
Q Consensus 74 a~e~e~~~~~~~~~~~~~fd~s~~~~~y~-t~~g-ikv~n~~t~~~~ 118 (374)
-- . +.+...-.|+-|-..|+-++-. +-.| +-+-|+..-+..
T Consensus 238 ~s---F-k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~ 280 (910)
T KOG1539|consen 238 MS---F-KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI 280 (910)
T ss_pred EE---E-EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence 11 0 1222334677888888776543 4446 666666554443
No 80
>KOG0295|consensus
Probab=65.30 E-value=8.3 Score=39.66 Aligned_cols=135 Identities=21% Similarity=0.283 Sum_probs=72.0
Q ss_pred eeeeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceE
Q psy11868 11 LTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNV 90 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~ 90 (374)
+|+|.= -++.+.+|+.+.|.+|++||+.||.+ -++|+-+++ +.+.|
T Consensus 111 vt~v~~-hp~~~~v~~as~d~tikv~D~~tg~~----e~~LrGHt~-----------------------------sv~di 156 (406)
T KOG0295|consen 111 VTRVIF-HPSEALVVSASEDATIKVFDTETGEL----ERSLRGHTD-----------------------------SVFDI 156 (406)
T ss_pred eeeeee-ccCceEEEEecCCceEEEEEccchhh----hhhhhcccc-----------------------------ceeEE
Confidence 455532 23444445666899999999999988 344533221 24678
Q ss_pred EEcCCCceEEEeee-eeeEEEEeee-ceeEEE-ecCCCc---cccchhhcccccccccccccchhhhhcc----------
Q psy11868 91 LFDDSGFIVLYATM-LGVKFVNIVT-NQCVRF-IGKPEN---LRLLHLSLFQGKVKTRKAATTLEMEAAK---------- 154 (374)
Q Consensus 91 ~fd~s~~~~~y~t~-~gikv~n~~t-~~~~~~-~g~~e~---~r~~~~~l~q~~~~~~~~~~~~~~~~~~---------- 154 (374)
.||.+|..|+=.+- |-||.-+..+ -+|+|. +|-+++ .-|++++-|=-.-.+.. |+-|-.-.
T Consensus 157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~---tik~We~~tg~cv~t~~~ 233 (406)
T KOG0295|consen 157 SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN---TIKAWECDTGYCVKTFPG 233 (406)
T ss_pred EEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccccc---ceeEEecccceeEEeccC
Confidence 89999988776542 2255555444 344443 343332 44555542211111110 01000000
Q ss_pred -CCcc--cccCCCceEEEeeccCceeEEeec
Q psy11868 155 -NPTL--EAIQPDPTLFCTGFNKNRFYLFSR 182 (374)
Q Consensus 155 -n~~l--~~~~~dp~l~~ta~~k~rfylfs~ 182 (374)
+..+ -....|=+|++++-+-+++-++.-
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~ 264 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVV 264 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEe
Confidence 0011 112368889999998888877743
No 81
>KOG2919|consensus
Probab=64.18 E-value=18 Score=37.06 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=53.3
Q ss_pred eeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEc
Q psy11868 14 VYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFD 93 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd 93 (374)
..+|+-+.|| +.+.|.-|.+||+-||||.-.| .+|..+. |+. ....+.|-
T Consensus 118 s~qP~t~l~a--~ssr~~PIh~wdaftG~lraSy----~~ydh~d-------------------e~t-----aAhsL~Fs 167 (406)
T KOG2919|consen 118 SDQPSTNLFA--VSSRDQPIHLWDAFTGKLRASY----RAYDHQD-------------------EYT-----AAHSLQFS 167 (406)
T ss_pred cCCCccceee--eccccCceeeeeccccccccch----hhhhhHH-------------------hhh-----hheeEEec
Confidence 3579999998 6778999999999999998655 3332211 111 12467899
Q ss_pred CCCceEEEeeeeeeEEEEe-eeceeEEE
Q psy11868 94 DSGFIVLYATMLGVKFVNI-VTNQCVRF 120 (374)
Q Consensus 94 ~s~~~~~y~t~~gikv~n~-~t~~~~~~ 120 (374)
..|..|+-+---=|+|.|+ ++|+-.++
T Consensus 168 ~DGeqlfaGykrcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 168 PDGEQLFAGYKRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred CCCCeEeecccceEEEeeccCCCCCCcc
Confidence 9999988775555777776 55554444
No 82
>KOG0318|consensus
Probab=62.68 E-value=7.4 Score=41.73 Aligned_cols=32 Identities=9% Similarity=0.313 Sum_probs=27.6
Q ss_pred ccccceeeeeeecCCCCEEEEEeCCceEEEEeec
Q psy11868 16 DESLARFAELKLSETEPVRVFSFLSGKLTRVYDE 49 (374)
Q Consensus 16 ~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~de 49 (374)
-|...||+ |.|.|..+||||..|.||.+++-=
T Consensus 244 sPDs~~~~--T~SaDkt~KIWdVs~~slv~t~~~ 275 (603)
T KOG0318|consen 244 SPDSTQFL--TVSADKTIKIWDVSTNSLVSTWPM 275 (603)
T ss_pred CCCCceEE--EecCCceEEEEEeeccceEEEeec
Confidence 46677887 888999999999999999998843
No 83
>KOG0274|consensus
Probab=62.26 E-value=9.6 Score=41.01 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=54.3
Q ss_pred ecceeeeeeccccce-eeeeeecCCCCEEEEEeCCc-eEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccc
Q psy11868 7 LSGKLTRVYDESLAR-FAELKLSETEPVRVFSFLSG-KLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQ 84 (374)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~~~d~~ir~f~~~tg-kl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~ 84 (374)
|+|---|||.-..+. --...-|-|..||+||+.++ |++.+|-... .
T Consensus 367 l~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~--------------------------------~ 414 (537)
T KOG0274|consen 367 LSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT--------------------------------S 414 (537)
T ss_pred ecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCc--------------------------------c
Confidence 455555666543333 22123447999999999999 5554442211 1
Q ss_pred cCcceEEEcCCCceEEEeeeee-eEEEEeeeceeEEEecCC
Q psy11868 85 LSLSNVLFDDSGFIVLYATMLG-VKFVNIVTNQCVRFIGKP 124 (374)
Q Consensus 85 ~~~~~~~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~~g~~ 124 (374)
....++.+ +++|+=.++-| ||+-+..++++++++.-.
T Consensus 415 ~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 415 LVSSLLLR---DNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred cccccccc---cceeEeccccccEEEeecccCceeeeeccC
Confidence 11233344 48999999999 999999999999998654
No 84
>KOG0295|consensus
Probab=61.35 E-value=16 Score=37.77 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=61.4
Q ss_pred eeeeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceE
Q psy11868 11 LTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNV 90 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~ 90 (374)
+.|+.++.++.--.|+.+.|-+||||-+.|+...-.+-| -| +.+|.=--.++. .+ .-
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~-------hE--------------h~vEci~wap~~-~~-~~ 293 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE-------HE--------------HPVECIAWAPES-SY-PS 293 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc-------cc--------------cceEEEEecccc-cC-cc
Confidence 568888998888777888999999999999832211111 00 222220000111 11 22
Q ss_pred EEcCCC-----ceEEEeeeee-eEEEEeeeceeEEEecCCCc-cccch
Q psy11868 91 LFDDSG-----FIVLYATMLG-VKFVNIVTNQCVRFIGKPEN-LRLLH 131 (374)
Q Consensus 91 ~fd~s~-----~~~~y~t~~g-ikv~n~~t~~~~~~~g~~e~-~r~~~ 131 (374)
+++.+| +++.-++-=+ ||+.|+.|++|+-.|+-.+| +|=+.
T Consensus 294 i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 294 ISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred hhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 344444 5777665433 89999999999999988766 66544
No 85
>KOG0272|consensus
Probab=60.69 E-value=22 Score=37.23 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=52.5
Q ss_pred eeeecceeeeeec--cccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhccc
Q psy11868 4 FSFLSGKLTRVYD--ESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEK 81 (374)
Q Consensus 4 ~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~ 81 (374)
.-||.|.+..||+ =|++.+-+||-|.|.++||||..--+..-++ +.-
T Consensus 338 im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i--------------------------pAH----- 386 (459)
T KOG0272|consen 338 IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI--------------------------PAH----- 386 (459)
T ss_pred EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec--------------------------ccc-----
Confidence 3477777777764 2455555559999999999998765553222 000
Q ss_pred ccccCcceEEEcC-CCceEEEeeeee-eEEEEeeeceeEEEe
Q psy11868 82 SEQLSLSNVLFDD-SGFIVLYATMLG-VKFVNIVTNQCVRFI 121 (374)
Q Consensus 82 ~~~~~~~~~~fd~-s~~~~~y~t~~g-ikv~n~~t~~~~~~~ 121 (374)
++. -.-+-|++ .|.||+=++.=+ +|+-+..+..+++.+
T Consensus 387 ~nl--VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 387 SNL--VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred cch--hhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 011 13567995 999999776421 555665555555554
No 86
>KOG2445|consensus
Probab=60.00 E-value=6.8 Score=39.62 Aligned_cols=104 Identities=25% Similarity=0.321 Sum_probs=58.0
Q ss_pred eeeccccceeeeeeecCCCCEEEEEeC--CceEEE-----EeechhHHHHHHHHhccCCCccchhhhhhh---------h
Q psy11868 13 RVYDESLARFAELKLSETEPVRVFSFL--SGKLTR-----VYDESLARFADLQKAKQQLPNMEFGRRMAT---------E 76 (374)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~ir~f~~~--tgkl~~-----~~des~~~~~~~~~~~~~~~~~~f~rr~a~---------e 76 (374)
-+||..|.+.| |+|+|.+|.|||+. ||+-.+ .=|-|+=.+ .--+-|||+=+|. =
T Consensus 19 Vs~D~~GRRmA--tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV--------~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 19 VSFDFYGRRMA--TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRV--------VWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred eeecccCceee--eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEE--------EecCccccceEEEEecCCceeee
Confidence 47999999998 89999999999964 222211 111111000 0123344443332 1
Q ss_pred hhccccccc-----CcceEEEcCCCceE---EEeeeeeeEEEEeeeceeEEEecCCCc
Q psy11868 77 RDLEKSEQL-----SLSNVLFDDSGFIV---LYATMLGVKFVNIVTNQCVRFIGKPEN 126 (374)
Q Consensus 77 ~e~~~~~~~-----~~~~~~fd~s~~~~---~y~t~~gikv~n~~t~~~~~~~g~~e~ 126 (374)
.|.+++... .....+-|..+..+ .=|.-+|.|..-......+||+-..|.
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 121111100 11233344444332 236789999999999999999988774
No 87
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=59.62 E-value=49 Score=33.84 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=46.8
Q ss_pred CCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCCCceEEEeeeee---
Q psy11868 30 TEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSGFIVLYATMLG--- 106 (374)
Q Consensus 30 d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s~~~~~y~t~~g--- 106 (374)
...|.|+|..|+|.++.+. +++ ...++.|...|+-+||.|--+
T Consensus 278 ~~~V~ViD~~t~kvi~~i~--------------------------vG~--------~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIE--------------------------LGH--------EIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred CCEEEEEECCCCeEEEEEe--------------------------CCC--------ceeeEEECCCCCeEEEEeCCCCCc
Confidence 3789999999999997762 222 234788999999999977643
Q ss_pred eEEEEeeeceeEEEe
Q psy11868 107 VKFVNIVTNQCVRFI 121 (374)
Q Consensus 107 ikv~n~~t~~~~~~~ 121 (374)
|.|+|..|+++++.+
T Consensus 324 VsViD~~t~k~i~~i 338 (352)
T TIGR02658 324 LYIFDAETGKELSSV 338 (352)
T ss_pred EEEEECcCCeEEeee
Confidence 899999999999987
No 88
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=59.25 E-value=42 Score=34.13 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=46.5
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
+.+.+.+.. +.+.|..|.++|..|+|+++.+.- .....++.+..
T Consensus 44 ~s~Dgr~~y--v~~rdg~vsviD~~~~~~v~~i~~----------------------------------G~~~~~i~~s~ 87 (369)
T PF02239_consen 44 FSPDGRYLY--VANRDGTVSVIDLATGKVVATIKV----------------------------------GGNPRGIAVSP 87 (369)
T ss_dssp -TT-SSEEE--EEETTSEEEEEETTSSSEEEEEE-----------------------------------SSEEEEEEE--
T ss_pred ecCCCCEEE--EEcCCCeEEEEECCcccEEEEEec----------------------------------CCCcceEEEcC
Confidence 344444333 346789999999999999988732 12345788889
Q ss_pred CCceEEEeee--eeeEEEEeeeceeEEEe
Q psy11868 95 SGFIVLYATM--LGVKFVNIVTNQCVRFI 121 (374)
Q Consensus 95 s~~~~~y~t~--~gikv~n~~t~~~~~~~ 121 (374)
.|++++=+.. =.+.|+|..|.++++.+
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeec
Confidence 9998875543 36888999999999877
No 89
>KOG0281|consensus
Probab=58.70 E-value=3.6 Score=42.26 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=14.8
Q ss_pred eecCCCCEEEEEeCCceEEEEeec
Q psy11868 26 KLSETEPVRVFSFLSGKLTRVYDE 49 (374)
Q Consensus 26 ~~~~d~~ir~f~~~tgkl~~~~de 49 (374)
+-|.||+||+|+..||..+|++.-
T Consensus 335 sASgDRTikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred EecCCceEEEEeccceeeehhhhc
Confidence 556666666666666666666544
No 90
>KOG0650|consensus
Probab=58.15 E-value=18 Score=39.65 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=35.5
Q ss_pred Eeeeecceeeee-eccccceeeeeeecCCCCEEEEEeCCceEEEEe
Q psy11868 3 VFSFLSGKLTRV-YDESLARFAELKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
||-+-.|.++.+ .|+||+..| +=+.|+.||||-.+||..+|+.
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wla--sGsdDGtvriWEi~TgRcvr~~ 438 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLA--SGSDDGTVRIWEIATGRCVRTV 438 (733)
T ss_pred eEeccCCeEEEEEecCCcceee--ecCCCCcEEEEEeecceEEEEE
Confidence 455666776655 699999998 6668999999999999999986
No 91
>KOG0279|consensus
Probab=56.49 E-value=16 Score=36.48 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=26.9
Q ss_pred eeeeeccccceeeeeeecCCCCEEEEEeCCceEEEEe
Q psy11868 11 LTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
++.|.=.+..+|| .+-|.|+.+|+||..+|+-.|.+
T Consensus 66 v~dv~~s~dg~~a-lS~swD~~lrlWDl~~g~~t~~f 101 (315)
T KOG0279|consen 66 VSDVVLSSDGNFA-LSASWDGTLRLWDLATGESTRRF 101 (315)
T ss_pred ecceEEccCCceE-EeccccceEEEEEecCCcEEEEE
Confidence 3444445566676 34558999999999999998887
No 92
>KOG0273|consensus
Probab=54.49 E-value=15 Score=39.06 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=35.5
Q ss_pred CeEeeeecceeeeee------------ccccceeeeeeecCCCCEEEEEeCCceEEEEee
Q psy11868 1 VRVFSFLSGKLTRVY------------DESLARFAELKLSETEPVRVFSFLSGKLTRVYD 48 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~d 48 (374)
||+|+..+|.-+.++ -|++.+.| +=+.|+.|.||+.+||||++.|-
T Consensus 434 V~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA--sGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 434 VKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA--SGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred EEEEEccCCceeEeeccCCCceEEEEecCCCcEEE--ecCCCCeeEeccccchheeEeec
Confidence 577777788766654 24566666 55579999999999999999983
No 93
>KOG0973|consensus
Probab=53.83 E-value=14 Score=42.29 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=30.0
Q ss_pred eeccccceeeeeeecCCCCEEEEEeCCceEEEEeechh
Q psy11868 14 VYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESL 51 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~ 51 (374)
.+||.|.+|| +.+.||+|+||+..+=-+.+.++|..
T Consensus 178 s~DP~Gky~A--SqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 178 SWDPIGKYFA--SQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred EECCccCeee--eecCCceEEEEEcccceeeEeeccch
Confidence 5899999999 99999999999955544788888754
No 94
>KOG1274|consensus
Probab=53.69 E-value=19 Score=40.81 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=58.0
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
|||-+...| ..+-|++|+||++.+|++..+++--. .+.||-- ......+-|-.
T Consensus 146 ~~p~~~fLA--vss~dG~v~iw~~~~~~~~~tl~~v~-------------k~n~~~~------------s~i~~~~aW~P 198 (933)
T KOG1274|consen 146 YDPKGNFLA--VSSCDGKVQIWDLQDGILSKTLTGVD-------------KDNEFIL------------SRICTRLAWHP 198 (933)
T ss_pred EcCCCCEEE--EEecCceEEEEEcccchhhhhcccCC-------------ccccccc------------cceeeeeeecC
Confidence 888888887 66679999999999999998875511 1222220 11223445665
Q ss_pred C-CceEEEeeeeeeEEEEeeeceeEEEecC
Q psy11868 95 S-GFIVLYATMLGVKFVNIVTNQCVRFIGK 123 (374)
Q Consensus 95 s-~~~~~y~t~~gikv~n~~t~~~~~~~g~ 123 (374)
. |+|++||+===|||++..+-...-.|--
T Consensus 199 k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 199 KGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 5 9999999888899999888777665543
No 95
>KOG0289|consensus
Probab=53.25 E-value=35 Score=36.05 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=27.1
Q ss_pred cceeeee-eccccceeeeeeecCCCCEEEEEeCCceEEEEe
Q psy11868 8 SGKLTRV-YDESLARFAELKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 8 ~~~~~~~-~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
+|+++++ +-|.| +-+|+-|.|..|++||.+.-|.+++|
T Consensus 389 t~~vk~i~FsENG--Y~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 389 TGPVKAISFSENG--YWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred CCceeEEEeccCc--eEEEEEecCCeEEEEEehhhccccee
Confidence 4555554 33333 44458889999999999998888777
No 96
>KOG1332|consensus
Probab=53.10 E-value=8.5 Score=37.95 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.0
Q ss_pred eeeccccceeeeeeecCCCCEEEEEeCCc
Q psy11868 13 RVYDESLARFAELKLSETEPVRVFSFLSG 41 (374)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~ir~f~~~tg 41 (374)
+++|-.|.+.| |+|+|+.||||.....
T Consensus 17 a~lDyygkrlA--TcsSD~tVkIf~v~~n 43 (299)
T KOG1332|consen 17 AQLDYYGKRLA--TCSSDGTVKIFEVRNN 43 (299)
T ss_pred hhhhhhcceee--eecCCccEEEEEEcCC
Confidence 46788889998 9999999999998743
No 97
>KOG4283|consensus
Probab=50.33 E-value=40 Score=34.25 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=73.2
Q ss_pred eeeeeeecCCCCEEEEEeCCc-eEEEEeechhHHHHHHHHhc---------------------------cCCCccchhhh
Q psy11868 21 RFAELKLSETEPVRVFSFLSG-KLTRVYDESLARFADLQKAK---------------------------QQLPNMEFGRR 72 (374)
Q Consensus 21 ~~~~~~~~~d~~ir~f~~~tg-kl~~~~des~~~~~~~~~~~---------------------------~~~~~~~f~rr 72 (374)
-|..||-|.|+.||+||+.-. -..|++|-+-..+...-++. -.+-+|+=||-
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 455577779999999999866 67789998753222111111 01445666663
Q ss_pred hhhhhhcccc----cccCcceEEEcCCCceEEEeeeeeeEEEEeeeceeEEEecCCCccccchhhccccc
Q psy11868 73 MATERDLEKS----EQLSLSNVLFDDSGFIVLYATMLGVKFVNIVTNQCVRFIGKPENLRLLHLSLFQGK 138 (374)
Q Consensus 73 ~a~e~e~~~~----~~~~~~~~~fd~s~~~~~y~t~~gikv~n~~t~~~~~~~g~~e~~r~~~~~l~q~~ 138 (374)
.|||--+. .......+-=-.|+-|+++|--=|+-++|+..+.-+|.+--. .|=.+.+.||+.
T Consensus 281 --tl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 281 --TLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--LKRINCAAYRPD 346 (397)
T ss_pred --cccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc--cceeeEEeecCc
Confidence 34443321 111112233345677899987789999999999999998544 677778888864
No 98
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=49.04 E-value=35 Score=33.49 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=43.9
Q ss_pred CCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCCCc----eEEEe---e
Q psy11868 31 EPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSGF----IVLYA---T 103 (374)
Q Consensus 31 ~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s~~----~~~y~---t 103 (374)
-||=+||..|++++|+|.= . .++-+ ......+++.|.... -.+|= +
T Consensus 34 pKLv~~Dl~t~~li~~~~~--------------------p------~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~ 86 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPF--------------------P------PDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSG 86 (287)
T ss_dssp -EEEEEETTTTCEEEEEE----------------------------CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETT
T ss_pred cEEEEEECCCCcEEEEEEC--------------------C------hHHcc-cccccceEEEEccCCCCcceEEEEeCCC
Confidence 4899999999999999942 1 11111 112245677777543 33442 3
Q ss_pred eeeeEEEEeeeceeEEEecC
Q psy11868 104 MLGVKFVNIVTNQCVRFIGK 123 (374)
Q Consensus 104 ~~gikv~n~~t~~~~~~~g~ 123 (374)
.-||=|+|+.+|+.-|++-.
T Consensus 87 ~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 87 GPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp TCEEEEEETTTTEEEEEETC
T ss_pred cCcEEEEEccCCcEEEEecC
Confidence 34899999999999999865
No 99
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=48.90 E-value=1.1e+02 Score=27.49 Aligned_cols=26 Identities=12% Similarity=-0.086 Sum_probs=18.4
Q ss_pred CceEEEee-eeeeEEEEeeeceeEEEe
Q psy11868 96 GFIVLYAT-MLGVKFVNIVTNQCVRFI 121 (374)
Q Consensus 96 ~~~~~y~t-~~gikv~n~~t~~~~~~~ 121 (374)
|+.++.++ --+|-.+|+.|++++--+
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEe
Confidence 66666665 566888888888886554
No 100
>KOG0643|consensus
Probab=48.79 E-value=37 Score=34.01 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=20.1
Q ss_pred eeecCCCCEEEEEeCCceEEEEee
Q psy11868 25 LKLSETEPVRVFSFLSGKLTRVYD 48 (374)
Q Consensus 25 ~~~~~d~~ir~f~~~tgkl~~~~d 48 (374)
.|=|.|..+|+||..|||.+-.++
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~k 91 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATWK 91 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEee
Confidence 355689999999999999987664
No 101
>KOG0273|consensus
Probab=48.30 E-value=46 Score=35.51 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=53.3
Q ss_pred eeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCCCceEEEeee
Q psy11868 25 LKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSGFIVLYATM 104 (374)
Q Consensus 25 ~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s~~~~~y~t~ 104 (374)
++.+.|..||+||..+|+.+.++-- -..+-..+-|-.+|.+|.|+++
T Consensus 426 ~sas~dstV~lwdv~~gv~i~~f~k---------------------------------H~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 426 ASASFDSTVKLWDVESGVPIHTLMK---------------------------------HQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred EEeecCCeEEEEEccCCceeEeecc---------------------------------CCCceEEEEecCCCcEEEecCC
Confidence 4677999999999999999988610 0112346679999999999998
Q ss_pred ee-eEEEEeeeceeEEEecCCCc
Q psy11868 105 LG-VKFVNIVTNQCVRFIGKPEN 126 (374)
Q Consensus 105 ~g-ikv~n~~t~~~~~~~g~~e~ 126 (374)
=| +-+-++.|+++++-++-...
T Consensus 473 dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 473 DGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred CCeeEeccccchheeEeecCCCe
Confidence 65 45668889999998876654
No 102
>KOG1963|consensus
Probab=47.40 E-value=54 Score=36.98 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=74.6
Q ss_pred eccccce-eeeeeecCCCCEEEEEeCCceEEEEeechhHHHH---HHHHhcc-----------------CCCccchhhhh
Q psy11868 15 YDESLAR-FAELKLSETEPVRVFSFLSGKLTRVYDESLARFA---DLQKAKQ-----------------QLPNMEFGRRM 73 (374)
Q Consensus 15 ~~~~~~~-~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~---~~~~~~~-----------------~~~~~~f~rr~ 73 (374)
.+++..- +...+.+.||.|||||+.-|+|++++|=.+..+. -.+|+.. +-+.-.=|+|.
T Consensus 65 ~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~ 144 (792)
T KOG1963|consen 65 VLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRF 144 (792)
T ss_pred ecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeee
Confidence 3455443 4434556899999999999999999998875331 1333331 13344557888
Q ss_pred hhhhhccccccc-----CcceEEEcCCCceEEEeeeeeeEEEEeeeceeEEEecC
Q psy11868 74 ATERDLEKSEQL-----SLSNVLFDDSGFIVLYATMLGVKFVNIVTNQCVRFIGK 123 (374)
Q Consensus 74 a~e~e~~~~~~~-----~~~~~~fd~s~~~~~y~t~~gikv~n~~t~~~~~~~g~ 123 (374)
-++++++..... ...-+++-.+|+|-.--.+-+|-+++..+.. |..+.
T Consensus 145 ~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~--~~~~~ 197 (792)
T KOG1963|consen 145 VLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT--KHTSS 197 (792)
T ss_pred EeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc--eeecc
Confidence 888877764211 1346789999999999999999999988877 44443
No 103
>KOG0315|consensus
Probab=47.39 E-value=14 Score=36.60 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.4
Q ss_pred eeecCCCCEEEEEeCCceEEEEeechhH
Q psy11868 25 LKLSETEPVRVFSFLSGKLTRVYDESLA 52 (374)
Q Consensus 25 ~~~~~d~~ir~f~~~tgkl~~~~des~~ 52 (374)
+|-++|..+|+|+..+||.+|.|+--++
T Consensus 274 vTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred EecCCCCceeecccccCceeeecCCccc
Confidence 4778999999999999999999986543
No 104
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=46.85 E-value=16 Score=21.10 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=14.1
Q ss_pred eccccceeeeeeecCCCCEEEEE
Q psy11868 15 YDESLARFAELKLSETEPVRVFS 37 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~ 37 (374)
+.+....++ +.+.|+.|++|+
T Consensus 20 ~~~~~~~~~--~~~~d~~~~~~~ 40 (40)
T smart00320 20 FSPDGKYLA--SASDDGTIKLWD 40 (40)
T ss_pred ECCCCCEEE--EecCCCeEEEcC
Confidence 344444554 566899999985
No 105
>KOG0265|consensus
Probab=46.64 E-value=20 Score=36.23 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.3
Q ss_pred eecCCCCEEEEEeCCceEEEEeec
Q psy11868 26 KLSETEPVRVFSFLSGKLTRVYDE 49 (374)
Q Consensus 26 ~~~~d~~ir~f~~~tgkl~~~~de 49 (374)
+.++|++||+||..|||.+|..-+
T Consensus 107 S~gtDk~v~~wD~~tG~~~rk~k~ 130 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRIRKHKG 130 (338)
T ss_pred EecCCceEEEEecccceeeehhcc
Confidence 667999999999999999998754
No 106
>KOG0263|consensus
Probab=46.26 E-value=17 Score=40.31 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=51.3
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
+-|+.++.| |=|+|+.||+||..||--.|+|-- ...+-.-+.|-.
T Consensus 543 FHPNs~Y~a--TGSsD~tVRlWDv~~G~~VRiF~G---------------------------------H~~~V~al~~Sp 587 (707)
T KOG0263|consen 543 FHPNSNYVA--TGSSDRTVRLWDVSTGNSVRIFTG---------------------------------HKGPVTALAFSP 587 (707)
T ss_pred ECCcccccc--cCCCCceEEEEEcCCCcEEEEecC---------------------------------CCCceEEEEEcC
Confidence 457778887 778999999999999999999911 012334567777
Q ss_pred CCceEEEeeeee-eEEEEeeeceeEEE
Q psy11868 95 SGFIVLYATMLG-VKFVNIVTNQCVRF 120 (374)
Q Consensus 95 s~~~~~y~t~~g-ikv~n~~t~~~~~~ 120 (374)
.|++|.=+.--| ||+-++.+++.+..
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~~v~~ 614 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGSLVKQ 614 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCcchhh
Confidence 888877765544 67777777665543
No 107
>KOG2394|consensus
Probab=45.93 E-value=9.2 Score=41.20 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=39.6
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
+-+.+.+.| ++|.|+.+|||||.|.+|+-+. |+-...+.-+.|-.
T Consensus 298 FS~DG~~LA--~VSqDGfLRvF~fdt~eLlg~m---------------------------------kSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 298 FSPDGKYLA--TVSQDGFLRIFDFDTQELLGVM---------------------------------KSYFGGLLCVCWSP 342 (636)
T ss_pred EcCCCceEE--EEecCceEEEeeccHHHHHHHH---------------------------------HhhccceEEEEEcC
Confidence 345566666 9999999999999998886332 23234567889999
Q ss_pred CCceEEEe
Q psy11868 95 SGFIVLYA 102 (374)
Q Consensus 95 s~~~~~y~ 102 (374)
.|+||+-+
T Consensus 343 DGKyIvtG 350 (636)
T KOG2394|consen 343 DGKYIVTG 350 (636)
T ss_pred CccEEEec
Confidence 99998766
No 108
>KOG0289|consensus
Probab=45.75 E-value=58 Score=34.50 Aligned_cols=72 Identities=13% Similarity=0.186 Sum_probs=48.9
Q ss_pred eeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEc
Q psy11868 14 VYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFD 93 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd 93 (374)
++-|.|--|+ +.++|..|+|||.+++--.-.|+- ...+-..|-|-
T Consensus 354 ~fHpDgLifg--tgt~d~~vkiwdlks~~~~a~Fpg---------------------------------ht~~vk~i~Fs 398 (506)
T KOG0289|consen 354 AFHPDGLIFG--TGTPDGVVKIWDLKSQTNVAKFPG---------------------------------HTGPVKAISFS 398 (506)
T ss_pred eEcCCceEEe--ccCCCceEEEEEcCCccccccCCC---------------------------------CCCceeEEEec
Confidence 3445566666 778999999999988753333321 01223478899
Q ss_pred CCCceEEEeeeee-eEEEEeeeceeEEE
Q psy11868 94 DSGFIVLYATMLG-VKFVNIVTNQCVRF 120 (374)
Q Consensus 94 ~s~~~~~y~t~~g-ikv~n~~t~~~~~~ 120 (374)
|+|.||.-.+==| ||.-+++.-+....
T Consensus 399 ENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 399 ENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred cCceEEEEEecCCeEEEEEehhhcccce
Confidence 9999999998777 88888755444333
No 109
>KOG4547|consensus
Probab=45.20 E-value=20 Score=38.67 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=27.5
Q ss_pred ccccceeeeeeecCCCCEEEEEeCCceEEEEeech
Q psy11868 16 DESLARFAELKLSETEPVRVFSFLSGKLTRVYDES 50 (374)
Q Consensus 16 ~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des 50 (374)
++++++|| .-..|+.+|||+..++++..-|--+
T Consensus 2 ~~~~~~~A--~~~~~g~l~iw~t~~~~~~~e~~p~ 34 (541)
T KOG4547|consen 2 PPALDYFA--LSTGDGRLRIWDTAKNQLQQEFAPI 34 (541)
T ss_pred CchhheEe--ecCCCCeEEEEEccCceeeeeeccc
Confidence 68899999 4447999999999999999776543
No 110
>KOG0263|consensus
Probab=44.07 E-value=18 Score=40.17 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=30.5
Q ss_pred CeEeeeecceeeee-eccccceeeeeeecCCCCEEEEEeCCceEEEEe
Q psy11868 1 VRVFSFLSGKLTRV-YDESLARFAELKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
||+|+=-.|.+++| |-|-|-..| +-+.|+.|.|||..+|+++..+
T Consensus 570 VRiF~GH~~~V~al~~Sp~Gr~La--Sg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 570 VRIFTGHKGPVTALAFSPCGRYLA--SGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred EEEecCCCCceEEEEEcCCCceEe--ecccCCcEEEEEcCCCcchhhh
Confidence 45554444445544 445555554 6678999999999999998655
No 111
>KOG3914|consensus
Probab=43.68 E-value=12 Score=38.69 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=20.9
Q ss_pred ecCCCCEEEEEeCCceEEEEeech
Q psy11868 27 LSETEPVRVFSFLSGKLTRVYDES 50 (374)
Q Consensus 27 ~~~d~~ir~f~~~tgkl~~~~des 50 (374)
-|-|.+||+||..+||..+++|=+
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred cCCCCcEEEEecccCCcccccchh
Confidence 446999999999999999888854
No 112
>KOG2066|consensus
Probab=43.67 E-value=64 Score=36.49 Aligned_cols=102 Identities=21% Similarity=0.146 Sum_probs=65.3
Q ss_pred ccccceeeeeeecCCCCEEEEEeCCceEEEEeech-------hHHHHHHHHhccC----------CCccchhhhhhhhhh
Q psy11868 16 DESLARFAELKLSETEPVRVFSFLSGKLTRVYDES-------LARFADLQKAKQQ----------LPNMEFGRRMATERD 78 (374)
Q Consensus 16 ~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des-------~~~~~~~~~~~~~----------~~~~~f~rr~a~e~e 78 (374)
|.+|.++| ++|-|+||-|+..-|++...+||=- |.-.-.-||.++- -+.--||++--+ +
T Consensus 80 ~~~Gey~a--sCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v--~ 155 (846)
T KOG2066|consen 80 ILEGEYVA--SCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV--V 155 (846)
T ss_pred ccCCceEE--EecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce--e
Confidence 77899998 8889999999999999999888731 1111123444431 111223443333 1
Q ss_pred cccccccCcceEEEcCCCceEEEeeeeeeEEEEeeeceeEEEecCC
Q psy11868 79 LEKSEQLSLSNVLFDDSGFIVLYATMLGVKFVNIVTNQCVRFIGKP 124 (374)
Q Consensus 79 ~~~~~~~~~~~~~fd~s~~~~~y~t~~gikv~n~~t~~~~~~~g~~ 124 (374)
+. +...+-..+.|- ||+|.+++=+||||.++.+.+.+--+-.+
T Consensus 156 l~-~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 156 LS-EGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred ee-cCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCC
Confidence 10 111222345553 79999999999999999888876665543
No 113
>PRK04922 tolB translocation protein TolB; Provisional
Probab=43.55 E-value=1.2e+02 Score=31.02 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=25.4
Q ss_pred eeeeeccccceeeeeeec-CCCCEEEEEeCCceEEEEe
Q psy11868 11 LTRVYDESLARFAELKLS-ETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~d~~ir~f~~~tgkl~~~~ 47 (374)
..-.+.|.++++|.+... .+.+|.++|..+|+..+.-
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~ 244 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA 244 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec
Confidence 345677888888843332 3457999999999876543
No 114
>KOG2096|consensus
Probab=43.40 E-value=19 Score=36.85 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=25.1
Q ss_pred CeEeeeecc----eeeeeeccccceeeeeeecCCCCEEEEEeC
Q psy11868 1 VRVFSFLSG----KLTRVYDESLARFAELKLSETEPVRVFSFL 39 (374)
Q Consensus 1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~ir~f~~~ 39 (374)
+|||+ |+| -+..-+.++-.+.+ |.|.|+++||||..
T Consensus 269 ~rvf~-LkGH~saV~~~aFsn~S~r~v--tvSkDG~wriwdtd 308 (420)
T KOG2096|consen 269 KRVFS-LKGHQSAVLAAAFSNSSTRAV--TVSKDGKWRIWDTD 308 (420)
T ss_pred hhhhe-eccchhheeeeeeCCCcceeE--EEecCCcEEEeecc
Confidence 36666 344 34455666666665 89999999999974
No 115
>KOG0283|consensus
Probab=43.06 E-value=29 Score=38.65 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=35.5
Q ss_pred eecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCCCceEEEee
Q psy11868 26 KLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSGFIVLYAT 103 (374)
Q Consensus 26 ~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s~~~~~y~t 103 (374)
+.+.|.+|||||..+=+|+..|-- . ....+...+-|...|++|+-++
T Consensus 519 VTSnDSrIRI~d~~~~~lv~KfKG-------~------------------------~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 519 VTSNDSRIRIYDGRDKDLVHKFKG-------F------------------------RNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EecCCCceEEEeccchhhhhhhcc-------c------------------------ccCCcceeeeEccCCCEEEEee
Confidence 567899999999988888766622 0 1223456788999999999988
No 116
>PF00918 Gastrin: Gastrin/cholecystokinin family; InterPro: IPR001651 Gastrin and cholecystokinin (CCK) are structurally and functionally related peptide hormones that function as hormonal regulators of various digestive processes and feeding behaviors. They are known to induce gastric secretion, stimulate pancreatic secretion, increase blood circulation and water secretion in the stomach and intestine, and stimulate smooth muscle contraction. Originally found in the gut, these hormones have since been shown to be present in various parts of the nervous system. Like many other active peptides they are synthesized as larger protein precursors that are enzymatically converted to their mature forms. They are found in several molecular forms due to tissue-specific post-translational processing. The biological activity of gastrin and CCK is associated with the last five C-terminal residues. One or two positions downstream, there is a conserved sulphated tyrosine residue. The amphibian caerulein skin peptide, the cockroach leukosulphakinin I and II (LSK) peptides, Drosophila melanogaster (Fruit fly) putative CCK-homologs Drosulphakinins I and II, cionin, a Gallus gallus (Chicken) gastrin/cholecystokinin-like peptide and cionin, a neuropeptide from the protochordate Ciona intestinalis belong to the same family.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=42.25 E-value=7.9 Score=33.51 Aligned_cols=15 Identities=47% Similarity=0.734 Sum_probs=12.1
Q ss_pred CCccchhhhhhhhhh
Q psy11868 64 LPNMEFGRRMATERD 78 (374)
Q Consensus 64 ~~~~~f~rr~a~e~e 78 (374)
+-=||||||-|=|-|
T Consensus 99 ~GWMDFGRRSAEEye 113 (116)
T PF00918_consen 99 MGWMDFGRRSAEEYE 113 (116)
T ss_pred Ccccccccccccccc
Confidence 566999999887765
No 117
>KOG1273|consensus
Probab=41.37 E-value=38 Score=34.69 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=53.2
Q ss_pred eeecCCCCEEEEEeCCceEEEEeechhHHHHH----HHHhc-------cCCCccchhhh----hhhhhhcccccccCcce
Q psy11868 25 LKLSETEPVRVFSFLSGKLTRVYDESLARFAD----LQKAK-------QQLPNMEFGRR----MATERDLEKSEQLSLSN 89 (374)
Q Consensus 25 ~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~----~~~~~-------~~~~~~~f~rr----~a~e~e~~~~~~~~~~~ 89 (374)
.|-|.|++|..||.+.|-+.+.+-=+--.... ..+.. .+--=++|+-+ |+..-|.+.+ .....
T Consensus 81 ltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln--~sas~ 158 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN--SSASH 158 (405)
T ss_pred eeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccc--ccccc
Confidence 36678999999999999987655322111100 00000 01112344422 1222222111 11223
Q ss_pred EEEcCCCceEEEeeeee-eEEEEeeeceeEEE
Q psy11868 90 VLFDDSGFIVLYATMLG-VKFVNIVTNQCVRF 120 (374)
Q Consensus 90 ~~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~ 120 (374)
.+||..|++|+-||--| +-|+|..|=+||.-
T Consensus 159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~vas 190 (405)
T KOG1273|consen 159 GVFDRRGKYIITGTSKGKLLVYDAETLECVAS 190 (405)
T ss_pred ccccCCCCEEEEecCcceEEEEecchheeeee
Confidence 48999999999999887 67888888887653
No 118
>KOG0288|consensus
Probab=41.36 E-value=1.7e+02 Score=30.91 Aligned_cols=84 Identities=17% Similarity=0.274 Sum_probs=63.0
Q ss_pred cceeeeeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCc
Q psy11868 8 SGKLTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSL 87 (374)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~ 87 (374)
-|++|. +|-|.++.-..++++|-.+.++|..|-.+..+|--. + - .....+
T Consensus 341 gg~vtS-l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~----------g---------~----------k~asDw 390 (459)
T KOG0288|consen 341 GGRVTS-LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE----------G---------F----------KCASDW 390 (459)
T ss_pred Ccceee-EeeccCCeEEeeecCCCceeeeecccccEEEEeecc----------c---------c----------cccccc
Confidence 345554 366666666556779999999999999999888320 0 0 111225
Q ss_pred ceEEEcCCCceEEEeeeee-eEEEEeeeceeEEEe
Q psy11868 88 SNVLFDDSGFIVLYATMLG-VKFVNIVTNQCVRFI 121 (374)
Q Consensus 88 ~~~~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~~ 121 (374)
.-++|-..|.+++-|++=| ++|-|..|+||..++
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence 6889999999999999987 788999999998876
No 119
>KOG0285|consensus
Probab=40.59 E-value=25 Score=36.49 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=48.8
Q ss_pred ecceeeeeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccC
Q psy11868 7 LSGKLTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLS 86 (374)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~ 86 (374)
|||-+.--+-|..+..+ |.+.|..+||||++|--=+.++- |.+ ..
T Consensus 235 lS~V~~L~lhPTldvl~--t~grDst~RvWDiRtr~~V~~l~---------------------GH~------------~~ 279 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLV--TGGRDSTIRVWDIRTRASVHVLS---------------------GHT------------NP 279 (460)
T ss_pred cceeEEEeccccceeEE--ecCCcceEEEeeecccceEEEec---------------------CCC------------Cc
Confidence 34444444457777777 78899999999999866555552 111 11
Q ss_pred cceEEEcCCCceEEEeeeee-eEEEEeeeceeEEEe
Q psy11868 87 LSNVLFDDSGFIVLYATMLG-VKFVNIVTNQCVRFI 121 (374)
Q Consensus 87 ~~~~~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~~ 121 (374)
-..++|.+..--++-+|+=+ |+.-++..||-...+
T Consensus 280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tl 315 (460)
T KOG0285|consen 280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITL 315 (460)
T ss_pred ceeEEeecCCCceEEecCCceEEEeeeccCceeEee
Confidence 23556666666666665533 566666666655544
No 120
>KOG0288|consensus
Probab=40.12 E-value=35 Score=35.82 Aligned_cols=39 Identities=31% Similarity=0.379 Sum_probs=29.4
Q ss_pred eeeee-eccccceeeeeeecCCCCEEEEEeCCceEEEEeech
Q psy11868 10 KLTRV-YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDES 50 (374)
Q Consensus 10 ~~~~~-~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des 50 (374)
..||| +-|.+++-| +=|.|+.|.||+..||||-.+.-++
T Consensus 389 DwtrvvfSpd~~Yva--AGS~dgsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVA--AGSADGSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred ccceeEECCCCceee--eccCCCcEEEEEccCceEEEEeccC
Confidence 35555 455555554 6778999999999999999988663
No 121
>KOG0281|consensus
Probab=39.68 E-value=23 Score=36.67 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=32.2
Q ss_pred eEeeeecceeeeeeccccceeee--------eeecCCCCEEEEEeCCceEEEEee
Q psy11868 2 RVFSFLSGKLTRVYDESLARFAE--------LKLSETEPVRVFSFLSGKLTRVYD 48 (374)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~ir~f~~~tgkl~~~~d 48 (374)
+||+.-++...|.+..-.-..|- +.=|+|..||+||..+|+++|++.
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe 397 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 397 (499)
T ss_pred EEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHh
Confidence 56666666666666654433331 223489999999999999998864
No 122
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=38.73 E-value=47 Score=29.73 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=21.7
Q ss_pred ccCceeEEeecCCCCCCCCCCCcccccCC
Q psy11868 172 FNKNRFYLFSRREPADIKSPETDRDVFNE 200 (374)
Q Consensus 172 ~~k~rfylfs~~~p~~~~~~~~~rd~~~e 200 (374)
..++.|++||++...+..-..++||||.-
T Consensus 84 ~~~~t~W~ys~~~I~ei~i~~E~r~vWk~ 112 (147)
T PF05131_consen 84 PSSNTFWLYSSNSIFEIVINNEDRDVWKI 112 (147)
T ss_pred CCCCeEEEEeCCeeEEEEcCcchHHHHHH
Confidence 35778999999887766555678888743
No 123
>PRK01029 tolB translocation protein TolB; Provisional
Probab=37.48 E-value=1.7e+02 Score=30.20 Aligned_cols=34 Identities=6% Similarity=0.245 Sum_probs=24.9
Q ss_pred ceEEEcCCCceEEEeee----eeeEEEEeeeceeEEEe
Q psy11868 88 SNVLFDDSGFIVLYATM----LGVKFVNIVTNQCVRFI 121 (374)
Q Consensus 88 ~~~~fd~s~~~~~y~t~----~gikv~n~~t~~~~~~~ 121 (374)
.+..|..+|+.|+|.+- -.|-++|+.+++..++.
T Consensus 374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 35678888999998653 24778888888776665
No 124
>KOG1445|consensus
Probab=36.54 E-value=1.3e+02 Score=33.75 Aligned_cols=114 Identities=17% Similarity=0.256 Sum_probs=65.5
Q ss_pred eeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEc
Q psy11868 14 VYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFD 93 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd 93 (374)
-+.|.|.+.| |+|.|++||||+-+++.-- +| |+ .-.-......|+|-
T Consensus 727 AWSpdGr~~A--tVcKDg~~rVy~Prs~e~p-v~----------------------------Eg--~gpvgtRgARi~wa 773 (1012)
T KOG1445|consen 727 AWSPDGRRIA--TVCKDGTLRVYEPRSREQP-VY----------------------------EG--KGPVGTRGARILWA 773 (1012)
T ss_pred EECCCCccee--eeecCceEEEeCCCCCCCc-cc----------------------------cC--CCCccCcceeEEEE
Confidence 3457777777 9999999999999887421 22 10 00111222445555
Q ss_pred CCCceEEEeeeeeeEEEEeeeceeEEEecCCC-ccccchhhcccccccccccccchhhhhccCCcccccCC-CceEEEee
Q psy11868 94 DSGFIVLYATMLGVKFVNIVTNQCVRFIGKPE-NLRLLHLSLFQGKVKTRKAATTLEMEAAKNPTLEAIQP-DPTLFCTG 171 (374)
Q Consensus 94 ~s~~~~~y~t~~gikv~n~~t~~~~~~~g~~e-~~r~~~~~l~q~~~~~~~~~~~~~~~~~~n~~l~~~~~-dp~l~~ta 171 (374)
-. ++++-+.|-+. +.| ++.+|-.+.--.....+..+-.+-.|++--... --+||.|+
T Consensus 774 cd-------------------gr~viv~Gfdk~SeR--Qv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 774 CD-------------------GRIVIVVGFDKSSER--QVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred ec-------------------CcEEEEecccccchh--hhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 44 45555566655 366 455565433221122333334444555544433 35889999
Q ss_pred ccCceeEEee
Q psy11868 172 FNKNRFYLFS 181 (374)
Q Consensus 172 ~~k~rfylfs 181 (374)
-.-.+.|||-
T Consensus 833 KGD~~v~~yE 842 (1012)
T KOG1445|consen 833 KGDRFVNMYE 842 (1012)
T ss_pred CCCceEEEEE
Confidence 9999999994
No 125
>KOG0315|consensus
Probab=36.53 E-value=55 Score=32.57 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=49.8
Q ss_pred eeeeccccceeeeeeecCCCCEEEEEeCCc-eEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceE
Q psy11868 12 TRVYDESLARFAELKLSETEPVRVFSFLSG-KLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNV 90 (374)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~ir~f~~~tg-kl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~ 90 (374)
.-+|-|..-+.| |.|+|..|+||+..+- |+-++++- .. +=.--+
T Consensus 220 ~C~lSPd~k~la--t~ssdktv~iwn~~~~~kle~~l~g--------------------------------h~-rWvWdc 264 (311)
T KOG0315|consen 220 RCLLSPDVKYLA--TCSSDKTVKIWNTDDFFKLELVLTG--------------------------------HQ-RWVWDC 264 (311)
T ss_pred EEEECCCCcEEE--eecCCceEEEEecCCceeeEEEeec--------------------------------CC-ceEEee
Confidence 346788888888 8899999999999888 66655532 10 112356
Q ss_pred EEcCCCceEEEeeeee-eEEEEeeeceeEEEe
Q psy11868 91 LFDDSGFIVLYATMLG-VKFVNIVTNQCVRFI 121 (374)
Q Consensus 91 ~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~~ 121 (374)
+|-..|.||+-++-=+ .+.-++.+|+.||.+
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred eeccCccEEEecCCCCceeecccccCceeeec
Confidence 7888999988776322 344445555555543
No 126
>PRK04792 tolB translocation protein TolB; Provisional
Probab=36.47 E-value=1.8e+02 Score=30.15 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=22.0
Q ss_pred ceEEEcCCCceEEEeeee----eeEEEEeeeceeEEE
Q psy11868 88 SNVLFDDSGFIVLYATML----GVKFVNIVTNQCVRF 120 (374)
Q Consensus 88 ~~~~fd~s~~~~~y~t~~----gikv~n~~t~~~~~~ 120 (374)
.+..|..+|++|+|.+-- -|-++|+.+++..++
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 346788899999987643 255666666665554
No 127
>KOG0772|consensus
Probab=36.39 E-value=21 Score=38.40 Aligned_cols=41 Identities=32% Similarity=0.388 Sum_probs=33.5
Q ss_pred eeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhcc
Q psy11868 14 VYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQ 62 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~ 62 (374)
-.||+|++|+ +=|-|..|+.|||.- .|-|++.+.++|-...
T Consensus 174 ~~Dp~GaR~~--sGs~Dy~v~~wDf~g------Mdas~~~fr~l~P~E~ 214 (641)
T KOG0772|consen 174 AVDPSGARFV--SGSLDYTVKFWDFQG------MDASMRSFRQLQPCET 214 (641)
T ss_pred eecCCCceee--eccccceEEEEeccc------ccccchhhhccCcccc
Confidence 4799999998 666899999999985 4778888877776553
No 128
>KOG0646|consensus
Probab=36.03 E-value=87 Score=33.28 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.6
Q ss_pred eecCCCCEEEEEeCCceEEEEe
Q psy11868 26 KLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 26 ~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
|.|.||.||+||..+|+|+.++
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred EecCCceEEEEEeccceeeEEE
Confidence 7778999999999999998665
No 129
>KOG4328|consensus
Probab=35.92 E-value=1.4e+02 Score=31.81 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=70.6
Q ss_pred eeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEE
Q psy11868 13 RVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLF 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~f 92 (374)
+-|-||+...+ |.|-|..|||||-. ++-.-||-+-++. -+-.+||- ....-+.|
T Consensus 375 AyFSPs~gtl~--TT~~D~~IRv~dss---~~sa~~~p~~~I~---------Hn~~t~Rw------------lT~fKA~W 428 (498)
T KOG4328|consen 375 AYFSPSGGTLL--TTCQDNEIRVFDSS---CISAKDEPLGTIP---------HNNRTGRW------------LTPFKAAW 428 (498)
T ss_pred eEEcCCCCceE--eeccCCceEEeecc---cccccCCccceee---------ccCccccc------------ccchhhee
Confidence 55778888855 99999999999854 5555666443321 12234443 23356789
Q ss_pred cCCCceEEEeeee-eeEEEEeeeceeEEEecCCCccccchhhcccccccccccccchhhhhccCCcccccCCCceEEEee
Q psy11868 93 DDSGFIVLYATML-GVKFVNIVTNQCVRFIGKPENLRLLHLSLFQGKVKTRKAATTLEMEAAKNPTLEAIQPDPTLFCTG 171 (374)
Q Consensus 93 d~s~~~~~y~t~~-gikv~n~~t~~~~~~~g~~e~~r~~~~~l~q~~~~~~~~~~~~~~~~~~n~~l~~~~~dp~l~~ta 171 (374)
|.+-+.+.-+-+- -|-|+|-..++.|--++-+ ...+|....+.+| .+-++++-+
T Consensus 429 ~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P-------------------~~~tI~~vn~~HP------~~~~~~aG~ 483 (498)
T KOG4328|consen 429 DPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP-------------------ESSTIPSVNEFHP------MRDTLAAGG 483 (498)
T ss_pred CCCccEEEEeccCcceeEEcCCCCEEeeeccCc-------------------cccccccceeecc------cccceeccC
Confidence 9988877654432 2666666556544433322 2233333344444 233456666
Q ss_pred ccCceeEEeecC
Q psy11868 172 FNKNRFYLFSRR 183 (374)
Q Consensus 172 ~~k~rfylfs~~ 183 (374)
-.....|+|++.
T Consensus 484 ~s~Gki~vft~k 495 (498)
T KOG4328|consen 484 NSSGKIYVFTNK 495 (498)
T ss_pred CccceEEEEecC
Confidence 666778999875
No 130
>KOG1272|consensus
Probab=35.58 E-value=28 Score=37.03 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=22.1
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCce
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGK 42 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgk 42 (374)
.|++|.+.| |.+.||+|+|||...=+
T Consensus 301 v~~~G~YMa--TtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 301 VDRGGRYMA--TTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ECCCCcEEe--ecccccceeEeeecccc
Confidence 688888887 88999999999987544
No 131
>KOG0278|consensus
Probab=35.53 E-value=2.2e+02 Score=28.53 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=37.8
Q ss_pred cCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCCCceEEEeeeeee
Q psy11868 28 SETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSGFIVLYATMLGV 107 (374)
Q Consensus 28 ~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s~~~~~y~t~~gi 107 (374)
+.|+.||+||-.||+....+.= +. +-..+=.-.+|++|--+---+|
T Consensus 162 add~tVRLWD~rTgt~v~sL~~-----------~s-----------------------~VtSlEvs~dG~ilTia~gssV 207 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEF-----------NS-----------------------PVTSLEVSQDGRILTIAYGSSV 207 (334)
T ss_pred ccCCceEEEEeccCcEEEEEec-----------CC-----------------------CCcceeeccCCCEEEEecCcee
Confidence 3699999999999999977621 10 1123334456777543333388
Q ss_pred EEEEeeeceeEEE
Q psy11868 108 KFVNIVTNQCVRF 120 (374)
Q Consensus 108 kv~n~~t~~~~~~ 120 (374)
|+.+..+=.+++-
T Consensus 208 ~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 208 KFWDAKSFGLLKS 220 (334)
T ss_pred EEeccccccceee
Confidence 9988776665553
No 132
>PRK03629 tolB translocation protein TolB; Provisional
Probab=35.35 E-value=2.1e+02 Score=29.44 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=23.2
Q ss_pred eEEEcCCCceEEEeee-ee---eEEEEeeeceeEEEe
Q psy11868 89 NVLFDDSGFIVLYATM-LG---VKFVNIVTNQCVRFI 121 (374)
Q Consensus 89 ~~~fd~s~~~~~y~t~-~g---ikv~n~~t~~~~~~~ 121 (374)
...|..+|+.|+|.+- -| |.++|+.++++.++.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt 283 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT 283 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc
Confidence 4679999999998632 22 677787777765554
No 133
>KOG0290|consensus
Probab=34.38 E-value=30 Score=35.00 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=21.1
Q ss_pred ccceeeeeeecCCCCEEEEEeCCceEEEEeec
Q psy11868 18 SLARFAELKLSETEPVRVFSFLSGKLTRVYDE 49 (374)
Q Consensus 18 ~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~de 49 (374)
|-+.|| +++.|+.||+||.++=.=.-++=|
T Consensus 208 s~~~FA--SvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 208 SRDVFA--SVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ccceEE--EecCCCcEEEEEecccccceEEec
Confidence 456687 899999999999875433333333
No 134
>KOG0641|consensus
Probab=33.51 E-value=51 Score=32.41 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=64.3
Q ss_pred ecceeeeeeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccC
Q psy11868 7 LSGKLTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLS 86 (374)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~ 86 (374)
-.|.+-+.|--++.-|| .=|-|..||.||..---..+++|-... .--||.+ .
T Consensus 182 htghilalyswn~~m~~--sgsqdktirfwdlrv~~~v~~l~~~~~-----------------------~~gless---a 233 (350)
T KOG0641|consen 182 HTGHILALYSWNGAMFA--SGSQDKTIRFWDLRVNSCVNTLDNDFH-----------------------DGGLESS---A 233 (350)
T ss_pred CcccEEEEEEecCcEEE--ccCCCceEEEEeeeccceeeeccCccc-----------------------CCCcccc---e
Confidence 34678899999998888 666899999999999999999886320 0012222 1
Q ss_pred cceEEEcCCCceEEEeeee-eeEEEEeeeceeEEEecCCC----ccccchhhc
Q psy11868 87 LSNVLFDDSGFIVLYATML-GVKFVNIVTNQCVRFIGKPE----NLRLLHLSL 134 (374)
Q Consensus 87 ~~~~~fd~s~~~~~y~t~~-gikv~n~~t~~~~~~~g~~e----~~r~~~~~l 134 (374)
-..+.-|.||..|.-+--= ---.++|.-|+.+.-+--.. .+||-+-|-
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~ 286 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH 286 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce
Confidence 2467889999988765210 12346777777665443321 256655553
No 135
>KOG0296|consensus
Probab=33.44 E-value=34 Score=35.38 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.0
Q ss_pred eecCCCCEEEEEeCCceEEEEee
Q psy11868 26 KLSETEPVRVFSFLSGKLTRVYD 48 (374)
Q Consensus 26 ~~~~d~~ir~f~~~tgkl~~~~d 48 (374)
|.|.|++||.||-+||.|.-+|-
T Consensus 343 t~c~~g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 343 TACANGKVRQWDARTGQLKFTYT 365 (399)
T ss_pred eeccCceEEeeeccccceEEEEe
Confidence 57799999999999999999983
No 136
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=33.33 E-value=84 Score=36.66 Aligned_cols=32 Identities=6% Similarity=0.051 Sum_probs=22.4
Q ss_pred eeccccceeeeeeecCCCCEEEEEeCCceEEEEe
Q psy11868 14 VYDESLARFAELKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
.+|+.+..|. +-+.+++||+||..||++....
T Consensus 810 avd~dG~LYV--ADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 810 LCAKDGQIYV--ADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred eEeCCCcEEE--EECCCCEEEEEECCCCeEEEEe
Confidence 3456665554 4456889999999998887544
No 137
>KOG0643|consensus
Probab=33.32 E-value=35 Score=34.18 Aligned_cols=34 Identities=9% Similarity=0.057 Sum_probs=24.7
Q ss_pred eeeeccccceeeeeeecCCCCEEEEEeCCceEEEEe
Q psy11868 12 TRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
.++++|.++... +-..|++|++||..+|+.+..-
T Consensus 152 ~a~Wg~l~~~ii--~Ghe~G~is~~da~~g~~~v~s 185 (327)
T KOG0643|consen 152 SALWGPLGETII--AGHEDGSISIYDARTGKELVDS 185 (327)
T ss_pred eeeecccCCEEE--EecCCCcEEEEEcccCceeeec
Confidence 356777766554 3448999999999999766433
No 138
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=32.61 E-value=1.2e+02 Score=31.82 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=32.0
Q ss_pred cCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEcCCCceEEEeeeeee
Q psy11868 28 SETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSGFIVLYATMLGV 107 (374)
Q Consensus 28 ~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~s~~~~~y~t~~gi 107 (374)
+.+..|.+||..|||++|.+|-+ .-.+++|+++|+++..-|=-.|
T Consensus 123 ~~~~~i~~yDw~~~~~i~~i~v~-----------------------------------~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 123 KSSDFICFYDWETGKLIRRIDVS-----------------------------------AVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp EETTEEEEE-TTT--EEEEESS------------------------------------E-EEEEE-TTSSEEEEE-S-SE
T ss_pred ECCCCEEEEEhhHcceeeEEecC-----------------------------------CCcEEEEECCCCEEEEEeCCeE
Confidence 35557888888888888888751 1258899999999888876666
Q ss_pred EEEEee
Q psy11868 108 KFVNIV 113 (374)
Q Consensus 108 kv~n~~ 113 (374)
-|++-.
T Consensus 168 ~il~~~ 173 (443)
T PF04053_consen 168 YILKYN 173 (443)
T ss_dssp EEEEE-
T ss_pred EEEEec
Confidence 666643
No 139
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=32.49 E-value=66 Score=21.63 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=21.0
Q ss_pred cCCCCEEEEEeCCceEEEEeech
Q psy11868 28 SETEPVRVFSFLSGKLTRVYDES 50 (374)
Q Consensus 28 ~~d~~ir~f~~~tgkl~~~~des 50 (374)
+.|+.|.-+|..|||++-.|+..
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEEESS
T ss_pred CCCCEEEEEECCCCCEEEeeeCC
Confidence 68999999999999999999864
No 140
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=32.48 E-value=1.9e+02 Score=29.60 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=45.5
Q ss_pred CCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhh-hcccccccCcceEEEcCCCceEEEee---e
Q psy11868 29 ETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATER-DLEKSEQLSLSNVLFDDSGFIVLYAT---M 104 (374)
Q Consensus 29 ~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~-e~~~~~~~~~~~~~fd~s~~~~~y~t---~ 104 (374)
.+..|.|||.+|+|+++.+.= + ++ |.. .......+.+..+|++|.-.. -
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~---------------p----------~~p~~~--~~~~~~~~~ls~dgk~l~V~n~~p~ 127 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIEL---------------P----------EGPRFL--VGTYPWMTSLTPDNKTLLFYQFSPS 127 (352)
T ss_pred CCCEEEEEECccCcEEeEEcc---------------C----------CCchhh--ccCccceEEECCCCCEEEEecCCCC
Confidence 478899999999999987741 0 00 000 011234677889998887443 3
Q ss_pred eeeEEEEeeeceeEEEe
Q psy11868 105 LGVKFVNIVTNQCVRFI 121 (374)
Q Consensus 105 ~gikv~n~~t~~~~~~~ 121 (374)
-.+-|||+.++++++.+
T Consensus 128 ~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 128 PAVGVVDLEGKAFVRMM 144 (352)
T ss_pred CEEEEEECCCCcEEEEE
Confidence 46899999999999866
No 141
>KOG2106|consensus
Probab=31.57 E-value=4.5e+02 Score=28.73 Aligned_cols=102 Identities=19% Similarity=0.299 Sum_probs=66.4
Q ss_pred eeeeeccccceeeeeeecCCCCEEEEEeCCceEE--EEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcc
Q psy11868 11 LTRVYDESLARFAELKLSETEPVRVFSFLSGKLT--RVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLS 88 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~--~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~ 88 (374)
++-..-||-++|+ |.+.|+++|+|+ .-|+. |.+++ +..
T Consensus 372 wgla~hps~~q~~--T~gqdk~v~lW~--~~k~~wt~~~~d------------------------------------~~~ 411 (626)
T KOG2106|consen 372 WGLATHPSKNQLL--TCGQDKHVRLWN--DHKLEWTKIIED------------------------------------PAE 411 (626)
T ss_pred eeEEcCCChhhee--eccCcceEEEcc--CCceeEEEEecC------------------------------------cee
Confidence 4445678999998 888999999999 55554 22222 122
Q ss_pred eEEEcCCCceEEEeeeeeeE-EEEeeeceeEEEecCCCccccchhhcccccccccccccchhhhhccCCcccccCCCceE
Q psy11868 89 NVLFDDSGFIVLYATMLGVK-FVNIVTNQCVRFIGKPENLRLLHLSLFQGKVKTRKAATTLEMEAAKNPTLEAIQPDPTL 167 (374)
Q Consensus 89 ~~~fd~s~~~~~y~t~~gik-v~n~~t~~~~~~~g~~e~~r~~~~~l~q~~~~~~~~~~~~~~~~~~n~~l~~~~~dp~l 167 (374)
-+-|+.|| -|+-+|.-|-= |+|+.|...+-+--..| .+++ -...+|-..
T Consensus 412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~-------------------~ls~----------v~ysp~G~~ 461 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNE-------------------QLSV----------VRYSPDGAF 461 (626)
T ss_pred EeeccCcc-eEEEeeccceEEEEecccceeEEEEecCC-------------------ceEE----------EEEcCCCCE
Confidence 45699999 88888888854 56777755544422111 1111 112356667
Q ss_pred EEeeccCceeEEeec
Q psy11868 168 FCTGFNKNRFYLFSR 182 (374)
Q Consensus 168 ~~ta~~k~rfylfs~ 182 (374)
+|.|.+-+-+|+|.-
T Consensus 462 lAvgs~d~~iyiy~V 476 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRV 476 (626)
T ss_pred EEEecCCCeEEEEEE
Confidence 888999999999954
No 142
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=31.42 E-value=2.8e+02 Score=27.44 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=24.4
Q ss_pred eeeeeccccceeeeeeecC-CCCEEEEEeCCceEEEE
Q psy11868 11 LTRVYDESLARFAELKLSE-TEPVRVFSFLSGKLTRV 46 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-d~~ir~f~~~tgkl~~~ 46 (374)
+...+.|.+.+.|.+.... ..+|++||..+|+..+.
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~ 229 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV 229 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe
Confidence 4455778888887433322 35899999999976544
No 143
>KOG1407|consensus
Probab=30.71 E-value=1.6e+02 Score=29.51 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=59.2
Q ss_pred CeEeeeecceeeee-----------eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccch
Q psy11868 1 VRVFSFLSGKLTRV-----------YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEF 69 (374)
Q Consensus 1 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f 69 (374)
+|+|.+-+||-|+. +-|++.++| ....|-.|-.+|.++-|+...+. +.
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~--~~~kdD~it~id~r~~~~~~~~~----------~~--------- 147 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIA--VGNKDDRITFIDARTYKIVNEEQ----------FK--------- 147 (313)
T ss_pred EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEE--EecCcccEEEEEecccceeehhc----------cc---------
Confidence 47888888887765 456666666 45567777778877777664331 10
Q ss_pred hhhhhhhhhcccccccCcceEEEcCCC----ceEEEeeeeeeEEEEeeeceeEEE
Q psy11868 70 GRRMATERDLEKSEQLSLSNVLFDDSG----FIVLYATMLGVKFVNIVTNQCVRF 120 (374)
Q Consensus 70 ~rr~a~e~e~~~~~~~~~~~~~fd~s~----~~~~y~t~~gikv~n~~t~~~~~~ 120 (374)
--+.||--. ...|+.|=++| +.|-||+|-=+--++-++-.|.-|
T Consensus 148 ----~e~ne~~w~---~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI 195 (313)
T KOG1407|consen 148 ----FEVNEISWN---NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICI 195 (313)
T ss_pred ----ceeeeeeec---CCCCEEEEecCCceEEEEeccccccccccccCCcceEEE
Confidence 001222211 33577888888 678899887777777777777665
No 144
>PRK04922 tolB translocation protein TolB; Provisional
Probab=29.99 E-value=2e+02 Score=29.42 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=22.9
Q ss_pred ceEEEcCCCceEEEeeeee----eEEEEeeeceeE
Q psy11868 88 SNVLFDDSGFIVLYATMLG----VKFVNIVTNQCV 118 (374)
Q Consensus 88 ~~~~fd~s~~~~~y~t~~g----ikv~n~~t~~~~ 118 (374)
.++.|..+|+.|+|.+.-+ |.++|+.+++..
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 3578999999999987543 777777766543
No 145
>PRK01742 tolB translocation protein TolB; Provisional
Probab=29.48 E-value=3.3e+02 Score=27.83 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=21.0
Q ss_pred eEEEcCCCceEEEeee-e---eeEEEEeeeceeEEEe
Q psy11868 89 NVLFDDSGFIVLYATM-L---GVKFVNIVTNQCVRFI 121 (374)
Q Consensus 89 ~~~fd~s~~~~~y~t~-~---gikv~n~~t~~~~~~~ 121 (374)
.+.|..+|+.|+|.+- = -|.++|+.++++.++.
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec
Confidence 3568888888888652 2 2556666666655543
No 146
>PRK02889 tolB translocation protein TolB; Provisional
Probab=29.32 E-value=2.3e+02 Score=29.01 Aligned_cols=18 Identities=39% Similarity=0.563 Sum_probs=14.8
Q ss_pred eEEEcCCCceEEEeeeee
Q psy11868 89 NVLFDDSGFIVLYATMLG 106 (374)
Q Consensus 89 ~~~fd~s~~~~~y~t~~g 106 (374)
+..|..+|++|+|.+--|
T Consensus 375 ~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 375 SPSFAPNGRYILYATQQG 392 (427)
T ss_pred CceECCCCCEEEEEEecC
Confidence 457999999999998655
No 147
>KOG3881|consensus
Probab=28.83 E-value=36 Score=35.36 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=21.7
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEE
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLT 44 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~ 44 (374)
.+|+....| ..+-||-|||||..|-||+
T Consensus 298 ~hp~~~~la--s~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 298 CHPTHPVLA--SCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred EcCCCceEE--eeccceeEEEeecccchhh
Confidence 456555555 7779999999999996665
No 148
>PF09309 FCP1_C: FCP1, C-terminal; InterPro: IPR015388 The C-terminal domain of FCP-1 is required for interaction with the carboxy terminal domain of RAP74. Interaction relies extensively on van der Waals contacts between hydrophobic residues situated within alpha-helices in both domains []. ; PDB: 1ONV_B 1J2X_B.
Probab=28.39 E-value=19 Score=35.03 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=0.0
Q ss_pred CCCCEEEEEeCCceEEEEe
Q psy11868 29 ETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 29 ~d~~ir~f~~~tgkl~~~~ 47 (374)
+---||+||-.||||||.=
T Consensus 52 p~pEvr~YD~~TGKLIRkg 70 (263)
T PF09309_consen 52 PGPEVRIYDPVTGKLIRKG 70 (263)
T ss_dssp -------------------
T ss_pred CCCceeeecCcccceeecc
Confidence 5667999999999999864
No 149
>KOG2096|consensus
Probab=28.32 E-value=39 Score=34.60 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=17.4
Q ss_pred cccceeeeeeecCCCCEEEEEeCC
Q psy11868 17 ESLARFAELKLSETEPVRVFSFLS 40 (374)
Q Consensus 17 ~~~~~~~~~~~~~d~~ir~f~~~t 40 (374)
..|-.+| |+|.||.||||+...
T Consensus 96 SdGK~la--t~~~Dr~Ir~w~~~D 117 (420)
T KOG2096|consen 96 SDGKKLA--TISGDRSIRLWDVRD 117 (420)
T ss_pred CCCceeE--EEeCCceEEEEecch
Confidence 3455666 999999999998764
No 150
>KOG0271|consensus
Probab=27.61 E-value=62 Score=33.91 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=25.5
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEe
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
++|...++| +.|.|+.|||||..-|+..+.+
T Consensus 213 l~p~~r~la--s~skDg~vrIWd~~~~~~~~~l 243 (480)
T KOG0271|consen 213 LVPPCRRLA--SSSKDGSVRIWDTKLGTCVRTL 243 (480)
T ss_pred cCCCcccee--cccCCCCEEEEEccCceEEEEe
Confidence 345555676 7778999999999999999887
No 151
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=27.25 E-value=3.5e+02 Score=29.44 Aligned_cols=89 Identities=12% Similarity=0.235 Sum_probs=55.2
Q ss_pred CCC-CEEEEEeCCceEEEEeechhHHHHHHH--Hhcc-------C----CCccchhhhhhhhhhcccccccCcceEEEcC
Q psy11868 29 ETE-PVRVFSFLSGKLTRVYDESLARFADLQ--KAKQ-------Q----LPNMEFGRRMATERDLEKSEQLSLSNVLFDD 94 (374)
Q Consensus 29 ~d~-~ir~f~~~tgkl~~~~des~~~~~~~~--~~~~-------~----~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd~ 94 (374)
.|+ ++-|||..+|++-|. .+-|-.+..+. ++++ . +=++|=|. =++|++++..--.-..+-.
T Consensus 379 ~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn----v~~idkS~~~lItdf~~~~ 453 (668)
T COG4946 379 NDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN----VRLIDKSEYGLITDFDWHP 453 (668)
T ss_pred cCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC----eeEecccccceeEEEEEcC
Confidence 566 888888888887644 44444333321 1111 0 11222222 2456666555556778889
Q ss_pred CCceEEEeeee-----eeEEEEeeeceeEEEec
Q psy11868 95 SGFIVLYATML-----GVKFVNIVTNQCVRFIG 122 (374)
Q Consensus 95 s~~~~~y~t~~-----gikv~n~~t~~~~~~~g 122 (374)
.+.|+.|+-.- -||+.++.++|+.++-.
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 99999998544 48999999999988753
No 152
>KOG1274|consensus
Probab=27.09 E-value=83 Score=36.04 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=65.5
Q ss_pred cceeeeeeccccceeeeeeecCCCCEEEEEeCCc-----------eEEEEeechhHHH--HHHHHhc--cCCCccchhhh
Q psy11868 8 SGKLTRVYDESLARFAELKLSETEPVRVFSFLSG-----------KLTRVYDESLARF--ADLQKAK--QQLPNMEFGRR 72 (374)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~d~~ir~f~~~tg-----------kl~~~~des~~~~--~~~~~~~--~~~~~~~f~rr 72 (374)
-|.-+-.||++++ |- .++++|+-||+|+-.+- +++--|-+---.+ ..+|+.- ++.|.++++-=
T Consensus 14 ~G~t~i~~d~~ge-fi-~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 14 GGLTLICYDPDGE-FI-CTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred CceEEEEEcCCCC-EE-EEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccce
Confidence 3555556999999 43 46669999999987654 3332222211100 1123222 25777776632
Q ss_pred hhhhhhcccccccCcceEEEcCCCceEEEee-eeeeEEEEeeeceeEEEecC
Q psy11868 73 MATERDLEKSEQLSLSNVLFDDSGFIVLYAT-MLGVKFVNIVTNQCVRFIGK 123 (374)
Q Consensus 73 ~a~e~e~~~~~~~~~~~~~fd~s~~~~~y~t-~~gikv~n~~t~~~~~~~g~ 123 (374)
+ ..-..+..-+.|+-+|+.+..++ =.+||++|..+..-.+++=.
T Consensus 92 L-------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 92 L-------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred e-------eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc
Confidence 1 11223445678999999999885 47999999987766665533
No 153
>KOG0302|consensus
Probab=27.01 E-value=42 Score=34.96 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.4
Q ss_pred CCccCCcEEEEEEcCeEEeeC
Q psy11868 253 NNYYNGHIFHRVIKGFMIQTG 273 (374)
Q Consensus 253 ~GyY~gt~FhRVi~~f~IQgG 273 (374)
+..|+...|||-+||.+|.++
T Consensus 408 Qke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 408 QKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred hhHhhhheeccCCCCeEEEec
Confidence 346888999999999988865
No 154
>KOG0650|consensus
Probab=26.98 E-value=1.7e+02 Score=32.43 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=32.0
Q ss_pred eEEEcCCCceEEEeeeee-eEEEEeeeceeEEEecCCC
Q psy11868 89 NVLFDDSGFIVLYATMLG-VKFVNIVTNQCVRFIGKPE 125 (374)
Q Consensus 89 ~~~fd~s~~~~~y~t~~g-ikv~n~~t~~~~~~~g~~e 125 (374)
.+--|.+|..|.=|+=-| ++|-.+.|++|+|.+--++
T Consensus 405 ~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~ 442 (733)
T KOG0650|consen 405 SISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS 442 (733)
T ss_pred EEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc
Confidence 456788999999998888 8899999999999986665
No 155
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=26.82 E-value=2.7e+02 Score=27.56 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=21.1
Q ss_pred ceEEEcCCCceEEEeeee----eeEEEEeeeceeEEE
Q psy11868 88 SNVLFDDSGFIVLYATML----GVKFVNIVTNQCVRF 120 (374)
Q Consensus 88 ~~~~fd~s~~~~~y~t~~----gikv~n~~t~~~~~~ 120 (374)
..+.|..+|+.|+|.+-. -|.++|+.+++..++
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 357899999999886421 255666666554443
No 156
>KOG0271|consensus
Probab=26.60 E-value=26 Score=36.59 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.0
Q ss_pred eeecCCCCEEEEEeCCceEEEEee
Q psy11868 25 LKLSETEPVRVFSFLSGKLTRVYD 48 (374)
Q Consensus 25 ~~~~~d~~ir~f~~~tgkl~~~~d 48 (374)
++-|.||+||||+-..||+.|.+-
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lk 285 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELK 285 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhc
Confidence 455579999999999999987653
No 157
>PRK02889 tolB translocation protein TolB; Provisional
Probab=25.52 E-value=2.7e+02 Score=28.42 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=24.1
Q ss_pred eEEEcCCCceEEEeeeee----eEEEEeeeceeEEE
Q psy11868 89 NVLFDDSGFIVLYATMLG----VKFVNIVTNQCVRF 120 (374)
Q Consensus 89 ~~~fd~s~~~~~y~t~~g----ikv~n~~t~~~~~~ 120 (374)
+..|..+|++|+|.+.-| |.++|+.+++..++
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL 367 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence 567999999999988754 77778777665433
No 158
>PRK03629 tolB translocation protein TolB; Provisional
Probab=25.51 E-value=3.6e+02 Score=27.63 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=19.9
Q ss_pred ceEEEcCCCceEEEeeeee----eEEEEeeeceeEE
Q psy11868 88 SNVLFDDSGFIVLYATMLG----VKFVNIVTNQCVR 119 (374)
Q Consensus 88 ~~~~fd~s~~~~~y~t~~g----ikv~n~~t~~~~~ 119 (374)
....|..+|+.|+|.+--+ |-++|+.+++..+
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~ 325 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR 325 (429)
T ss_pred CceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE
Confidence 4567999999999987432 3344544444433
No 159
>KOG0294|consensus
Probab=24.95 E-value=84 Score=32.11 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=21.9
Q ss_pred ccccceeeeeeecCCCCEEEEEeCCc-----eEEEEee
Q psy11868 16 DESLARFAELKLSETEPVRVFSFLSG-----KLTRVYD 48 (374)
Q Consensus 16 ~~~~~~~~~~~~~~d~~ir~f~~~tg-----kl~~~~d 48 (374)
+|-.... +|.|+|+.|+|||...- +++-.||
T Consensus 260 ~~~~~~l--vTaSSDG~I~vWd~~~~~k~~~~~l~e~n 295 (362)
T KOG0294|consen 260 NPEHEYL--VTASSDGFIKVWDIDMETKKRPTLLAELN 295 (362)
T ss_pred cCCceEE--EEeccCceEEEEEccccccCCcceeEEee
Confidence 4444444 48899999999999887 4554444
No 160
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=24.94 E-value=4.2e+02 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=15.8
Q ss_pred eeeeeecCCCCEEEEEeCC-ceEE
Q psy11868 22 FAELKLSETEPVRVFSFLS-GKLT 44 (374)
Q Consensus 22 ~~~~~~~~d~~ir~f~~~t-gkl~ 44 (374)
|+.++-+.|+.|++||+.+ |+|.
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~ 26 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALT 26 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCcee
Confidence 3333445799999999974 6643
No 161
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=24.46 E-value=1e+02 Score=19.30 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=18.4
Q ss_pred ecCCCCEEEEEeCCceEEEEee
Q psy11868 27 LSETEPVRVFSFLSGKLTRVYD 48 (374)
Q Consensus 27 ~~~d~~ir~f~~~tgkl~~~~d 48 (374)
-+.|+.+..+|-.|||+.-.++
T Consensus 12 ~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 12 GSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EcCCCEEEEEEcccCcEEEEcC
Confidence 4579999999999999987653
No 162
>KOG0284|consensus
Probab=23.45 E-value=55 Score=34.40 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=22.0
Q ss_pred ccceeeeeeecCCCCEEEEEeCCceEEEEe
Q psy11868 18 SLARFAELKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 18 ~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
.-+.|+ ++|.|+.|+||||.-+|=-|++
T Consensus 191 nDskF~--t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 191 NDSKFL--TCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred CCceeE--EecCCCeEEEEeccCCchhhee
Confidence 344576 8889999999999998865554
No 163
>TIGR00760 araD L-ribulose-5-phosphate 4-epimerase. The homolog to this family from Mycobacterium smegmatis is flanked by putative araB and araA genes, consistent with it also being araD.
Probab=23.44 E-value=65 Score=30.65 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=45.0
Q ss_pred cchhhhhhhhhhcccccccCcceEEE--cCCCceEEEeeee--------eeEEEEeeeceeEEEecCCCccccchhhccc
Q psy11868 67 MEFGRRMATERDLEKSEQLSLSNVLF--DDSGFIVLYATML--------GVKFVNIVTNQCVRFIGKPENLRLLHLSLFQ 136 (374)
Q Consensus 67 ~~f~rr~a~e~e~~~~~~~~~~~~~f--d~s~~~~~y~t~~--------gikv~n~~t~~~~~~~g~~e~~r~~~~~l~q 136 (374)
++.+|+|. |+-|-. ...-|+-. ++.+.|+|=||-. -|-+||+.|++++.=-+|+..+..+++++|+
T Consensus 10 ~~~~~~l~-~~gl~~---~~~GNiS~R~~~~~~~lITPsG~~~~~l~~~div~vdl~~G~~i~g~~kpS~E~~lH~~IYr 85 (231)
T TIGR00760 10 LEANLALP-KHQLVT---FTWGNVSAIDRERGLVVIKPSGVEYDVMTADDMVVVDLETGNVVEGSKKPSSDTPTHLALYR 85 (231)
T ss_pred HHHHHHHH-HCCCCC---CCCCeEEEEecCCCEEEEeCCCCChhhCCHHHEEEEcCcCCccCCCCCCCCccHHHHHHHHH
Confidence 34667664 443332 12346633 5566788877743 4678888867665422357678999999999
Q ss_pred ccccc
Q psy11868 137 GKVKT 141 (374)
Q Consensus 137 ~~~~~ 141 (374)
..|.-
T Consensus 86 ~rpdv 90 (231)
T TIGR00760 86 AFPSI 90 (231)
T ss_pred hCCCC
Confidence 76543
No 164
>KOG1445|consensus
Probab=23.20 E-value=51 Score=36.63 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=22.9
Q ss_pred eeeccccceeeeeeecCCCCEEEEEeCC-ceEEE
Q psy11868 13 RVYDESLARFAELKLSETEPVRVFSFLS-GKLTR 45 (374)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~ir~f~~~t-gkl~~ 45 (374)
+++-+.|...| |-|.|++|||||-.+ |.-+.
T Consensus 176 a~WseDG~lla--tscKdkqirifDPRa~~~piQ 207 (1012)
T KOG1445|consen 176 ADWSEDGKLLA--TSCKDKQIRIFDPRASMEPIQ 207 (1012)
T ss_pred cccccCCceEe--eecCCcceEEeCCccCCCccc
Confidence 45667777777 669999999999874 44443
No 165
>KOG1273|consensus
Probab=22.79 E-value=8e+02 Score=25.45 Aligned_cols=79 Identities=10% Similarity=0.177 Sum_probs=55.3
Q ss_pred eeccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccCcceEEEc
Q psy11868 14 VYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFD 93 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~~~~~~fd 93 (374)
-+.+-|++.| .=|.|+.|-||||.|=.+-|++- .-..+-..+.|-
T Consensus 30 ~Fs~~G~~lA--vGc~nG~vvI~D~~T~~iar~ls---------------------------------aH~~pi~sl~WS 74 (405)
T KOG1273|consen 30 QFSRWGDYLA--VGCANGRVVIYDFDTFRIARMLS---------------------------------AHVRPITSLCWS 74 (405)
T ss_pred EeccCcceee--eeccCCcEEEEEccccchhhhhh---------------------------------ccccceeEEEec
Confidence 3456677777 67799999999999876554431 112345688999
Q ss_pred CCCceEEEeee-eeeEEEEeeeceeEEEecCCCccccchhh
Q psy11868 94 DSGFIVLYATM-LGVKFVNIVTNQCVRFIGKPENLRLLHLS 133 (374)
Q Consensus 94 ~s~~~~~y~t~-~gikv~n~~t~~~~~~~g~~e~~r~~~~~ 133 (374)
..|++||-+|- .-||.-++..+.++.- +||...-
T Consensus 75 ~dgr~LltsS~D~si~lwDl~~gs~l~r------irf~spv 109 (405)
T KOG1273|consen 75 RDGRKLLTSSRDWSIKLWDLLKGSPLKR------IRFDSPV 109 (405)
T ss_pred CCCCEeeeecCCceeEEEeccCCCceeE------EEccCcc
Confidence 99999998763 4577777777766553 4776544
No 166
>KOG0265|consensus
Probab=22.57 E-value=85 Score=31.87 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=31.5
Q ss_pred CeEeeeeccee----------eeeeccccceeeeeeec-CCCCEEEEEeCCceEEEEeec
Q psy11868 1 VRVFSFLSGKL----------TRVYDESLARFAELKLS-ETEPVRVFSFLSGKLTRVYDE 49 (374)
Q Consensus 1 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~d~~ir~f~~~tgkl~~~~de 49 (374)
||+|..-.|+- +-++||+--.--|++.+ .|+++||||.++-.-++++.+
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ 173 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN 173 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc
Confidence 35566666654 34566664444444443 799999999998777666644
No 167
>KOG2315|consensus
Probab=22.38 E-value=1.4e+02 Score=32.41 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=56.5
Q ss_pred Eeeeecc-eeeeeeccccceeeeeeec-CCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcc
Q psy11868 3 VFSFLSG-KLTRVYDESLARFAELKLS-ETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLE 80 (374)
Q Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~ 80 (374)
||+|-.| +=|..|.|.+...+.|-|+ --+.|-|||..+-|++-.++-
T Consensus 306 v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a------------------------------- 354 (566)
T KOG2315|consen 306 VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA------------------------------- 354 (566)
T ss_pred eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-------------------------------
Confidence 4555554 3467788888888877777 588899999988887755532
Q ss_pred cccccCcceEEEcCCCceEEEeeee-------eeEEEEeeeceeE
Q psy11868 81 KSEQLSLSNVLFDDSGFIVLYATML-------GVKFVNIVTNQCV 118 (374)
Q Consensus 81 ~~~~~~~~~~~fd~s~~~~~y~t~~-------gikv~n~~t~~~~ 118 (374)
....-.-|-++|.|++=+|-- |||+.+ +||+.+
T Consensus 355 ----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh-ytG~~l 394 (566)
T KOG2315|consen 355 ----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH-YTGSLL 394 (566)
T ss_pred ----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE-ecCcee
Confidence 222334577999999998876 888888 455543
No 168
>PRK00178 tolB translocation protein TolB; Provisional
Probab=22.23 E-value=3.9e+02 Score=26.91 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=21.4
Q ss_pred eEEEcCCCceEEEeeee----eeEEEEeeeceeEEE
Q psy11868 89 NVLFDDSGFIVLYATML----GVKFVNIVTNQCVRF 120 (374)
Q Consensus 89 ~~~fd~s~~~~~y~t~~----gikv~n~~t~~~~~~ 120 (374)
...|..+|+.|+|.+-- .|-++|+.++++.|+
T Consensus 291 ~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 45688889999887632 355666666665544
No 169
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=21.70 E-value=2.2e+02 Score=26.52 Aligned_cols=106 Identities=18% Similarity=0.257 Sum_probs=54.7
Q ss_pred cceeeeeeccccceeeeeee-cCCCCEEEEEeCCceEEEEeechhHHHHHHHHhccCCCccchhhhhhhhhhcccccccC
Q psy11868 8 SGKLTRVYDESLARFAELKL-SETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQLPNMEFGRRMATERDLEKSEQLS 86 (374)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~~~~~~~f~rr~a~e~e~~~~~~~~ 86 (374)
+|..+.+++++.+...+... .....+-+|+...+.++-.||+ +-.|-.. .|.+.. +..|.=+ ..
T Consensus 166 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~-~g~fv~~-----------~G~~~r-~~~i~W~--~~ 230 (275)
T PF00780_consen 166 TGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDN-IGVFVNK-----------NGEPSR-KSTIQWS--SA 230 (275)
T ss_pred CCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecc-eEEEEcC-----------CCCcCc-ccEEEcC--Cc
Confidence 35555555555444221111 1344566666666666666665 1111111 233322 2222111 12
Q ss_pred cceEEEcCCCceEEEeeeeeeEEEEeeeceeEEEecCCCccccch
Q psy11868 87 LSNVLFDDSGFIVLYATMLGVKFVNIVTNQCVRFIGKPENLRLLH 131 (374)
Q Consensus 87 ~~~~~fd~s~~~~~y~t~~gikv~n~~t~~~~~~~g~~e~~r~~~ 131 (374)
..++.|+. .||+=-+-=+|.|.|+.|++++.++- .++.|++.
T Consensus 231 p~~~~~~~--pyli~~~~~~iEV~~~~~~~lvQ~i~-~~~~~~l~ 272 (275)
T PF00780_consen 231 PQSVAYSS--PYLIAFSSNSIEVRSLETGELVQTIP-LPNIRLLC 272 (275)
T ss_pred hhEEEEEC--CEEEEECCCEEEEEECcCCcEEEEEE-CCCEEEEe
Confidence 34677744 34443344679999999999999886 44566654
No 170
>KOG0292|consensus
Probab=21.63 E-value=95 Score=35.86 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=0.0
Q ss_pred CeEeeeecceeeeeec------------cccceeeeeeecCCCCEEEEEeC
Q psy11868 1 VRVFSFLSGKLTRVYD------------ESLARFAELKLSETEPVRVFSFL 39 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~d~~ir~f~~~ 39 (374)
+|+|.+.|++..+|+- |+-+..+ .-|-|-+|||||..
T Consensus 117 IrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIV--SaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 117 IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIV--SASLDQTVRVWDIS 165 (1202)
T ss_pred EEEEeccCCceEEEEecCceEEEeeccCCccceEE--EecccceEEEEeec
No 171
>PRK04043 tolB translocation protein TolB; Provisional
Probab=21.59 E-value=2.7e+02 Score=28.86 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=13.1
Q ss_pred eEEEcCCCceEEEeee
Q psy11868 89 NVLFDDSGFIVLYATM 104 (374)
Q Consensus 89 ~~~fd~s~~~~~y~t~ 104 (374)
|..|...|.+|+|.+.
T Consensus 323 ~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 323 NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CceECCCCCEEEEEEc
Confidence 4578999999999875
No 172
>KOG0282|consensus
Probab=21.45 E-value=81 Score=33.68 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=24.0
Q ss_pred ccceeeeeeecCCCCEEEEEeCCceEEEEeec
Q psy11868 18 SLARFAELKLSETEPVRVFSFLSGKLTRVYDE 49 (374)
Q Consensus 18 ~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~de 49 (374)
-+.+|- +.|-||.|++||..||+..-.+-+
T Consensus 269 ~g~~fL--S~sfD~~lKlwDtETG~~~~~f~~ 298 (503)
T KOG0282|consen 269 CGTSFL--SASFDRFLKLWDTETGQVLSRFHL 298 (503)
T ss_pred cCCeee--eeecceeeeeeccccceEEEEEec
Confidence 344554 677899999999999999987744
No 173
>KOG2139|consensus
Probab=21.34 E-value=80 Score=32.89 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=50.3
Q ss_pred eccccceeeeeeecCCCCEEEEEeCCceEEEEeechhHHHHHHHHhcc--CC--Cccchhhhhhhhhhcccc-----ccc
Q psy11868 15 YDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQ--QL--PNMEFGRRMATERDLEKS-----EQL 85 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~ir~f~~~tgkl~~~~des~~~~~~~~~~~~--~~--~~~~f~rr~a~e~e~~~~-----~~~ 85 (374)
..+++-+++.|.+ -|+.|+|||-.||-.++..--++--++-+.=++. .| -..|=+=|+-.|...-.. ...
T Consensus 203 wn~dgt~l~tAS~-gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg 281 (445)
T KOG2139|consen 203 WNEDGTILVTASF-GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG 281 (445)
T ss_pred EcCCCCEEeeccc-CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC
Confidence 4677888884444 5999999999999888766333221111110010 00 011112233333322211 122
Q ss_pred CcceEEEcCCCceEEEeee
Q psy11868 86 SLSNVLFDDSGFIVLYATM 104 (374)
Q Consensus 86 ~~~~~~fd~s~~~~~y~t~ 104 (374)
.-+.++||.-|.||||.+.
T Consensus 282 rvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ceeeeeecCCCCEEEEEEc
Confidence 4579999999999999875
No 174
>KOG0293|consensus
Probab=20.83 E-value=83 Score=33.28 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.5
Q ss_pred eeecCCCCEEEEEeCCceEEEEe
Q psy11868 25 LKLSETEPVRVFSFLSGKLTRVY 47 (374)
Q Consensus 25 ~~~~~d~~ir~f~~~tgkl~~~~ 47 (374)
|.=|.|.||+||+-.+||++-++
T Consensus 456 aSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred EecCCCceEEEEEccCCceeEee
Confidence 34457999999999999999766
No 175
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=20.58 E-value=1.2e+02 Score=25.04 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=22.3
Q ss_pred CEEEEEeCCceEEEEe--echhHHHHHHHH
Q psy11868 32 PVRVFSFLSGKLTRVY--DESLARFADLQK 59 (374)
Q Consensus 32 ~ir~f~~~tgkl~~~~--des~~~~~~~~~ 59 (374)
.|+|.|-.||+++|.+ +|-|+++..|++
T Consensus 69 vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 69 VVKVIDKETGEVIRQIPPEELLDLAKRLRE 98 (107)
T ss_dssp EEEEEETTT-SEEEEE-HHHHHHHHHHHHH
T ss_pred EEEEEECCCCcEEEeCCcHHHHHHHHHHHH
Confidence 4899999999999999 566777777765
Done!