RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11868
(374 letters)
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a WD40 domain. This group consists of several
hypothetical and putative eukaryotic and bacterial
proteins which have a cyclophilin domain and a WD40
domain. Function of the protein is not known.
Length = 148
Score = 288 bits (740), Expect = 1e-98
Identities = 111/149 (74%), Positives = 127/149 (85%), Gaps = 2/149 (1%)
Query: 224 IIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGG 282
IIHT+ GDIH++LF +E KTVENF H++N YYN IFHRVIKGFMIQTGDPTG GTGG
Sbjct: 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGG 60
Query: 283 QSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTK 342
+SIWG EF+DEF LKHDRPYT+SMANAGPNTNGSQFFIT TPWLDNKHTVFGRV K
Sbjct: 61 ESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVK 120
Query: 343 GMEVVQNISNVKTNHKTDQPYDDIQVISI 371
GM+VVQ I NVKT+ K D+PY+DI++I+I
Sbjct: 121 GMDVVQRIENVKTD-KNDRPYEDIKIINI 148
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a modified RING finger domain. This group
includes the nuclear proteins, Human hCyP-60 and
Caenorhabditis elegans MOG-6 which, compared to the
archetypal cyclophilin Human cyclophilin A exhibit
reduced peptidylprolyl cis- trans isomerase activity and
lack a residue important for cyclophilin binding. Human
hCyP-60 has been shown to physically interact with the
proteinase inhibitor peptide eglin c and; C. elegans
MOG-6 to physically interact with MEP-1, a nuclear zinc
finger protein. MOG-6 has been shown to function in
germline sex determination.
Length = 159
Score = 203 bits (518), Expect = 6e-65
Identities = 82/150 (54%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
Query: 225 IHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQ 283
+HT+ GD++L+L + A K ENF K YY+G IFHR I+ FMIQ GDPTGTG GG+
Sbjct: 4 LHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGE 63
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKG 343
SIWG FKDEFK +L HD +SMAN+GPNTNGSQFFIT LD KHTVFGRV G
Sbjct: 64 SIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGG 123
Query: 344 MEVVQNISNVKTNHKTDQPYDDIQVISISV 373
+E ++ + NV TD+P ++I++ SV
Sbjct: 124 LETLEAMENVPD-PGTDRPKEEIKIEDTSV 152
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl
cis- trans isomerases. This family contains eukaryotic,
bacterial and archeal proteins which exhibit a
peptidylprolyl cis- trans isomerases activity (PPIase,
Rotamase) and in addition bind the immunosuppressive
drug cyclosporin (CsA). Immunosuppression in
vertebrates is believed to be the result of the
cyclophilin A-cyclosporin protein drug complex binding
to and inhibiting the protein-phosphatase calcineurin.
PPIase is an enzyme which accelerates protein folding by
catalyzing the cis-trans isomerization of the peptide
bonds preceding proline residues. Cyclophilins are a
diverse family in terms of function and have been
implicated in protein folding processes which depend on
catalytic /chaperone-like activities. This group
contains human cyclophilin 40, a co-chaperone of the
hsp90 chaperone system; human cyclophilin A, a
chaperone in the HIV-1 infectious process and; human
cyclophilin H, a component of the U4/U6 snRNP, whose
isomerization or chaperoning activities may play a role
in RNA splicing. .
Length = 146
Score = 202 bits (516), Expect = 8e-65
Identities = 76/148 (51%), Positives = 94/148 (63%), Gaps = 3/148 (2%)
Query: 224 IIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGG 282
+ T+ G I ++L+ E KTVENF ++ +Y+G FHRVI GFMIQ GDPTGTG GG
Sbjct: 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG 60
Query: 283 QSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTK 342
S G +F DE H R T+SMANAGPNTNGSQFFIT PTP LD KHTVFG+V +
Sbjct: 61 -SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVE 119
Query: 343 GMEVVQNISNVKTNHKTDQPYDDIQVIS 370
GM+VV I T+ +P + +
Sbjct: 120 GMDVVDKIERGDTDEN-GRPIKPVTISD 146
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like:
cyclophilin 2-like peptidylprolyl cis- trans isomerase
(PPIase) domain similar to Schizosaccharomyces pombe
cyp-2. These proteins bind their respective SNW
chromatin binding protein in autologous systems, in a
CsA independent manner indicating interaction with a
surface outside the PPIase active site. SNW proteins
play a basic and broad range role in signaling.
Length = 146
Score = 196 bits (500), Expect = 2e-62
Identities = 84/147 (57%), Positives = 109/147 (74%), Gaps = 3/147 (2%)
Query: 224 IIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGG 282
+ T+MG+I L+L+ KT +NF +K YYNG IFHR+IK FMIQ GDPTGTG GG
Sbjct: 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGG 60
Query: 283 QSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTK 342
SI+G +F+DE LKH +SMANAGPNTNGSQFFITL PTPWLD KHT+FGRV+K
Sbjct: 61 ASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSK 120
Query: 343 GMEVVQNISNVKTNHKTDQPYDDIQVI 369
GM+V++N+ V+T D+P D+++++
Sbjct: 121 GMKVIENMVEVQTQT--DRPIDEVKIL 145
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) -
cyclophilin family [Posttranslational modification,
protein turnover, chaperones].
Length = 158
Score = 195 bits (499), Expect = 5e-62
Identities = 77/160 (48%), Positives = 103/160 (64%), Gaps = 12/160 (7%)
Query: 222 SAIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGT-G 279
+ I+ T+ GDI ++L+ + A KTV NF K +Y+G IFHRVI GFMIQ GDPTG G
Sbjct: 1 TVILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDG 60
Query: 280 TGGQSIWGGEFKDEFKS--HLKHDRPYTVSMANAG-PNTNGSQFFITLTPTPWLDNKHTV 336
TGG FKDE + +H R T+SMA AG PN+NGSQFFIT+ P+LD K+TV
Sbjct: 61 TGGPGP---PFKDENFALNGDRHKR-GTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTV 116
Query: 337 FGRVTKGMEVVQNISNVKTNHK---TDQPYDDIQVISISV 373
FG+V +GM+VV I N T+ D P D ++++S+ +
Sbjct: 117 FGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI 156
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like. Proteins
similar to Human cyclophilin-like peptidylprolyl cis-
trans isomerase (PPIL3). Members of this family lack a
key residue important for cyclosporin binding: the
tryptophan residue corresponding to W121 in human
hCyP-18a; most members have a histidine at this
position. The exact function of the protein is not
known.
Length = 153
Score = 195 bits (498), Expect = 5e-62
Identities = 80/153 (52%), Positives = 106/153 (69%), Gaps = 2/153 (1%)
Query: 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGT 280
S +HT++GDI ++LF +C K ENF + YYNG IFHR IKGFM+QTGDPTGTG
Sbjct: 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGK 61
Query: 281 GGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
GG+SIWG +F+DEF+ LKHD VSMAN GPNTNGSQFFIT P LD K+TVFG+V
Sbjct: 62 GGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKV 121
Query: 341 TKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
G E + + + + K +P ++I++ +++
Sbjct: 122 IDGFETLDTLEKLPVD-KKYRPLEEIRIKDVTI 153
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl
cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans
isomerases, also known as cyclophilins, share this
domain of about 109 amino acids. Cyclophilins have been
found in all organisms studied so far and catalyze
peptidyl-prolyl isomerisation during which the peptide
bond preceding proline (the peptidyl-prolyl bond) is
stabilised in the cis conformation. Mammalian
cyclophilin A (CypA) is a major cellular target for the
immunosuppressive drug cyclosporin A (CsA). Other roles
for cyclophilins may include chaperone and cell
signalling function.
Length = 144
Score = 187 bits (476), Expect = 9e-59
Identities = 79/149 (53%), Positives = 99/149 (66%), Gaps = 8/149 (5%)
Query: 224 IIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGG 282
I T++G I ++LF E KTVENF K +Y+G IFHRVI GFMIQ GDPTG GTGG
Sbjct: 3 DITTNLGRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRVIPGFMIQGGDPTGPGTGG 62
Query: 283 QSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTK 342
+ DEF S LKH R T+SMA +GPN+ GSQFFITL P LD +TVFGRV +
Sbjct: 63 K----RSIPDEFVSKLKHKR-GTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVVE 117
Query: 343 GMEVVQNISNVKTNHKTDQPYDDIQVISI 371
GM+VV+ I V+T+ D+P D+++ S
Sbjct: 118 GMDVVEKIEKVETDG--DRPLKDVKITSC 144
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like:
cyclophilin-type peptidylprolyl cis- trans isomerase)
(PPIase) domain similar to Caenorhabditis elegans
cyclophilin 16. C. elegans CeCYP-16, compared to the
archetypal cyclophilin Human cyclophilin A has, a
reduced peptidylprolyl cis- trans isomerase activity, is
cyclosporin insensitive and shows an altered substrate
preference favoring, hydrophobic, acidic or amide amino
acids. Most members of this subfamily have a glutamate
residue in the active site at the position equivalent to
a tryptophan (W121 in Human cyclophilin A), which has
been shown to be important for cyclophilin binding.
Length = 171
Score = 187 bits (476), Expect = 2e-58
Identities = 72/154 (46%), Positives = 100/154 (64%), Gaps = 3/154 (1%)
Query: 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGT 280
I+ T+ GDI ++L+ KE K NF YY+ IFHRV+ GF+IQ GDPTGTGT
Sbjct: 7 KVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGT 66
Query: 281 GGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
GG+SI+G FKDEF S L+ +R V MANAG ++NGSQFF TL L+NKHT+FG+V
Sbjct: 67 GGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKV 126
Query: 341 TK-GMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
T + + ++ V+T+ K ++P ++ S+ V
Sbjct: 127 TGDTIYNLLKLAEVETD-KDERPVYPPKITSVEV 159
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin
A, B and H-like cyclophilin-type peptidylprolyl cis-
trans isomerase (PPIase) domain. This family represents
the archetypal cystolic cyclophilin similar to human
cyclophilins A, B and H. PPIase is an enzyme which
accelerates protein folding by catalyzing the cis-trans
isomerization of the peptide bonds preceding proline
residues. These enzymes have been implicated in protein
folding processes which depend on catalytic
/chaperone-like activities. As cyclophilins, Human
hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae
Cpr1 and C. elegans Cyp-3, are inhibited by the
immunosuppressive drug cyclopsporin A (CsA). CsA binds
to the PPIase active site. Cyp-3. S. cerevisiae Cpr1
interacts with the Rpd3 - Sin3 complex and in addition
is a component of the Set3 complex. S. cerevisiae Cpr1
has also been shown to have a role in Zpr1p nuclear
transport. Human cyclophilin H associates with the
[U4/U6.U5] tri-snRNP particles of the splicesome.
Length = 164
Score = 181 bits (461), Expect = 2e-56
Identities = 82/158 (51%), Positives = 97/158 (61%), Gaps = 14/158 (8%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---C-----VHSKNNYYNGHIFHRVIKG 267
+V +D I G I ++LF + KT ENF C K Y G FHRVI
Sbjct: 2 KVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPD 61
Query: 268 FMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLT 325
FMIQ GD T G GTGG+SI+G +F DE FK LKH P +SMANAGPNTNGSQFFIT
Sbjct: 62 FMIQGGDFTRGNGTGGKSIYGEKFPDENFK--LKHTGPGLLSMANAGPNTNGSQFFITTV 119
Query: 326 PTPWLDNKHTVFGRVTKGMEVVQNISNVKT-NHKTDQP 362
TPWLD KH VFG+V +GM+VV+ I NV + N K +
Sbjct: 120 KTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKK 157
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional.
Length = 183
Score = 153 bits (387), Expect = 4e-45
Identities = 79/152 (51%), Positives = 96/152 (63%), Gaps = 14/152 (9%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---C------VHSKNNYYNGHIFHRVIK 266
+V +D +I + G I +LF + KT ENF C KN +Y G IFHR+I
Sbjct: 17 KVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIP 76
Query: 267 GFMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITL 324
FM Q GD T GTGG+SI+G +F DE FK LKHD+P +SMANAGPNTNGSQFFIT
Sbjct: 77 QFMCQGGDITNHNGTGGESIYGRKFTDENFK--LKHDQPGLLSMANAGPNTNGSQFFITT 134
Query: 325 TPTPWLDNKHTVFGRVTKGMEVVQNISNVKTN 356
P PWLD KH VFG+V +GMEVV+ + T
Sbjct: 135 VPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ 166
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type
peptidylprolyl cis- trans isomerase domain occuring with
a C-terminal RNA recognition motif domain (RRM). This
subfamily of the cyclophilin domain family contains a
number of eukaryotic cyclophilins having the RRM domain
including the nuclear proteins: human hCyP-57,
Arabidopsis thaliana AtCYP59, Caenorhabditis elegans
CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241
protein has been shown to have a role in cell
morphogenesis.
Length = 166
Score = 145 bits (367), Expect = 2e-42
Identities = 66/154 (42%), Positives = 92/154 (59%), Gaps = 10/154 (6%)
Query: 224 IIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGG 282
++ T++GD+ + LF EC NF K YYN +F+ V K F+ QTGDPTGTG GG
Sbjct: 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGG 60
Query: 283 QSIWGGE-------FKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTP-TPWLDNKH 334
+SI+ F+ E LKH + TVSM NAG N NGSQF+ITL +LD KH
Sbjct: 61 ESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKH 120
Query: 335 TVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQV 368
TVFG+V +G +V++ I++ + +P DI++
Sbjct: 121 TVFGQVVEGFDVLEKINDAIVD-DDGRPLKDIRI 153
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H);
Provisional.
Length = 186
Score = 137 bits (347), Expect = 4e-39
Identities = 75/150 (50%), Positives = 87/150 (58%), Gaps = 14/150 (9%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CV--HSKNNY---YNGHIFHRVIKGF 268
V +D I G I ++LF + KT ENF C K Y G FHRVIK F
Sbjct: 21 VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDF 80
Query: 269 MIQTGD-PTGTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTP 326
MIQ GD G GTG SI+G +F+DE F + KH P +SMAN+GPNTNG QFFIT
Sbjct: 81 MIQGGDFLKGDGTGCVSIYGSKFEDENFIA--KHTGPGLLSMANSGPNTNGCQFFITCAK 138
Query: 327 TPWLDNKHTVFGRVT-KGMEVVQNISNVKT 355
WLDNKH VFGRV G+ VV+ I NV T
Sbjct: 139 CDWLDNKHVVFGRVLGDGLLVVRKIENVAT 168
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like:
cyclophilin-type A-like peptidylprolyl cis- trans
isomerase (PPIase) domain similar to the cytosolic E.
coli cyclophilin A and Streptomyces antibioticus
SanCyp18. Compared to the archetypal cyclophilin Human
cyclophilin A, these have reduced affinity for
cyclosporin A. E. coli cyclophilin A has a similar
peptidylprolyl cis- trans isomerase activity to the
human cyclophilin A. Most members of this subfamily
contain a phenylalanine residue at the position
equivalent to Human cyclophilin W121, where a tyrptophan
has been shown to be important for cyclophilin binding.
Length = 155
Score = 97.1 bits (242), Expect = 2e-24
Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 26/164 (15%)
Query: 225 IHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQ 283
TS+GDI ++L+ + A TVENF + + +Y+ IFHRVI GF+IQ GG
Sbjct: 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQ---------GGG 52
Query: 284 SIWGGEFKDEFK-------SHLKHDRPYTVSMA-NAGPNTNGSQFFITLTPTPWLDNK-- 333
K+ K + L + R T++MA P++ SQFFI L LD +
Sbjct: 53 FTPDLAQKETLKPIKNEAGNGLSNTR-GTIAMARTNAPDSATSQFFINLKDNASLDYQNE 111
Query: 334 ---HTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISVK 374
+TVFG VT+GM+VV I+ V+T + Y D+ V + ++
Sbjct: 112 QWGYTVFGEVTEGMDVVDKIAGVETY--SFGSYQDVPVQDVIIE 153
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase
A); Provisional.
Length = 190
Score = 89.1 bits (221), Expect = 6e-21
Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 227 TSMGDIHLQLFKECAK-TVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSI 285
TS G+I L+L + A +V+NF + + +YN FHRVI GFMIQ G T Q
Sbjct: 35 TSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKK 92
Query: 286 WGGEFKDEFKSHLKHDRPYTVSMA-NAGPNTNGSQFFITLTPTPWLDN-----KHTVFGR 339
K+E + L++ R T++MA A ++ SQFFI + +LD+ + VFG+
Sbjct: 93 PNPPIKNEADNGLRNTRG-TIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGK 151
Query: 340 VTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
V KGM+V IS V T PY ++ + +
Sbjct: 152 VVKGMDVADKISQVPT--HDVGPYQNVPSKPVVI 183
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase
B); Provisional.
Length = 164
Score = 84.1 bits (208), Expect = 2e-19
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 18/162 (11%)
Query: 226 HTSMGDIHLQLFKECAK-TVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG-GQ 283
HT+ GDI ++ F + A TV+NF + + +YN IFHRVI GFMIQ G G G Q
Sbjct: 5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGG---GFEPGMKQ 61
Query: 284 SIWGGEFKDEFKSHLKHDRPYTVSMANAG-PNTNGSQFFITLTPTPWLDNK--------H 334
K+E + LK+ R T++MA P++ +QFFI + +L+ +
Sbjct: 62 KATKEPIKNEANNGLKNTRG-TLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120
Query: 335 TVFGRVTKGMEVVQNISNVKTNHK---TDQPYDDIQVISISV 373
VF V +GM+VV I V T D P +D+ + S++V
Sbjct: 121 CVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like:
cyclophilin-type peptidylprolyl cis- trans isomerases
(cyclophilins) similar ot the Spinach thylakoid lumen
protein TLP40. Compared to the archetypal cyclophilin
Human cyclophilin A, these proteins have similar
peptidylprolyl cis- trans isomerase activity and reduced
affinity for cyclosporin A. Spinach TLP40 has been shown
to have a dual function as a folding catalyst and
regulator of dephosphorylation.
Length = 176
Score = 59.8 bits (145), Expect = 9e-11
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 38/144 (26%)
Query: 243 TVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG--------------------- 281
T NF + +Y+G FHRV GF++QTGDP G G
Sbjct: 21 TAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQ 80
Query: 282 GQSIWG------GEFKDEFKSHLKHDRPYTVSMANA--GPNTNGSQFFITL-------TP 326
Q ++G G + ++ + ++MA PN+ SQFF L +
Sbjct: 81 KQPVYGKTLEEAGRYDEQPVL-PFNA-FGAIAMARTEFDPNSASSQFFFLLKDNELTPSR 138
Query: 327 TPWLDNKHTVFGRVTKGMEVVQNI 350
LD ++ VFG VT G+++++ +
Sbjct: 139 NNVLDGRYAVFGYVTDGLDILREL 162
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional.
Length = 249
Score = 47.6 bits (113), Expect = 3e-06
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 282 GQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVT 341
S G DE H +H ++M + GP+T+GS F ITL P+P LD K VFG+
Sbjct: 129 NVSSTGTPIADEGYRH-RHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAV 187
Query: 342 KGMEVVQNISNVKTNHKTDQPYDDI 366
+ +++ + ++ P DD+
Sbjct: 188 DDLSLLEKLESL--------PLDDV 204
>gnl|CDD|222999 PHA03142, PHA03142, helicase-primase primase subunit BSLF1;
Provisional.
Length = 835
Score = 29.6 bits (67), Expect = 2.9
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 227 TSMGDIHLQLFKE---CAKTVENFCVH-----SKNNYYNGHIFHRVIKGFMIQTGDPTGT 278
TS +I+ + E F +K+ Y + H+ R +K DP
Sbjct: 287 TSPDNINTLPPEGPILTRLLDEEFKEKMATYYNKSTYLSTHVRIRSVKLPGPYGYDPDPC 346
Query: 279 GTGGQSIWGGEFKD 292
++ W G+ +D
Sbjct: 347 DGLLRAYWAGQSRD 360
>gnl|CDD|185149 PRK15233, PRK15233, putative fimbrial chaperone protein SefB;
Provisional.
Length = 246
Score = 29.3 bits (65), Expect = 3.0
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 110 VNIVTNQCVRFIGKPENLRLLHLSLFQGKVKTRKAATTLEMEAAKNPT 157
VN+VTN C++ I +P+ + L + + K+K + ++ + KNPT
Sbjct: 148 VNVVTNSCIKLIYRPKTIDLTTMEI-ADKLKLERKGNSIVI---KNPT 191
>gnl|CDD|119412 cd00205, rhv_like, Picornavirus capsid protein domain_like.
Picornaviruses are non-enveloped plus-strand ssRNA
animal viruses with icosahedral capsids composed of 60
copies each of 4 virus encoded proteins; alignment
includes picornaviridae, like poliovirus, hepatitis A
virus, rhinovirus, foot-and-mouth disease virus and
encephalomyocarditis virus; common structure is an
8-stranded beta sandwich.
Length = 178
Score = 28.9 bits (65), Expect = 3.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 300 HDRPYTVSMANAGPNTNGSQFF-ITLTPTPW-LDNKHTVFGRVTK 342
DRP TV N + +G+Q F L+P L ++T G +
Sbjct: 5 ADRPTTVGTNNWNSSASGTQLFQWKLSPALGFLLLQNTPLGALLS 49
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 29.5 bits (67), Expect = 3.1
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 33/79 (41%)
Query: 75 TERDLEKSEQLSLSNVLFDDSGFIVLYATMLGVKFVNIVTNQCVRFIGKPENLRLL--HL 132
T++DLE D F+ +A ++ + FV PE++RLL L
Sbjct: 431 TDKDLE-------------DLAFVAKHADIVALSFVR-----------SPEDVRLLLDAL 466
Query: 133 SLFQG-------KVKTRKA 144
K++TR+A
Sbjct: 467 EKLGADDLGVVLKIETRRA 485
>gnl|CDD|234879 PRK00969, PRK00969, hypothetical protein; Provisional.
Length = 508
Score = 29.5 bits (67), Expect = 3.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
Query: 334 HTVFGRVTKGMEVV------QNISNVKTN 356
HTV GRVT G+E++ I+ VKT
Sbjct: 288 HTVVGRVTHGIELIDFAKEGDRIT-VKTV 315
>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid
dehydrogenase) and HSD3B1(delta 5-delta
4-isomerase)-like, extended (e) SDRs. This extended-SDR
subgroup includes human 3 beta-HSD/HSD3B1 and C(27)
3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid
oxidoreductase; HSD3B7], and related proteins. These
proteins have the characteristic active site tetrad and
NAD(P)-binding motif of extended SDRs. 3 beta-HSD
catalyzes the oxidative conversion of delta 5-3
beta-hydroxysteroids to the delta 4-3-keto
configuration; this activity is essential for the
biosynthesis of all classes of hormonal steroids. C(27)
3beta-HSD is a membrane-bound enzyme of the endoplasmic
reticulum, it catalyzes the isomerization and oxidation
of 7alpha-hydroxylated sterol intermediates, an early
step in bile acid biosynthesis. Mutations in the human
gene encoding C(27) 3beta-HSD underlie a rare autosomal
recessive form of neonatal cholestasis. Extended SDRs
are distinct from classical SDRs. In addition to the
Rossmann fold (alpha/beta folding pattern with a central
beta-sheet) core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids. Extended SDRs are a
diverse collection of proteins, and include isomerases,
epimerases, oxidoreductases, and lyases; they typically
have a TGXXGXXG cofactor binding motif. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid sythase have
a GGXGXXG NAD(P)-binding motif and an altered active
site motif (YXXXN). Fungal type ketoacyl reductases have
a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 354
Score = 29.0 bits (65), Expect = 4.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 304 YTVSMANAGPNTNGSQFFITLTPTPWLD 331
YT S+ AGPN G F + TP+ D
Sbjct: 119 YTSSIEVAGPNFKGRPIFNGVEDTPYED 146
>gnl|CDD|178198 PLN02587, PLN02587, L-galactose dehydrogenase.
Length = 314
Score = 27.8 bits (62), Expect = 9.1
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 4 FSFLSGKLTRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFADLQKAKQQ 63
F F + ++T+ DESLAR L+L + + G L ++ +E++ LQK K+
Sbjct: 90 FDFSAERVTKSVDESLAR---LQLDYVDILHCHDIEFGSLDQIVNETIPA---LQKLKES 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,752,562
Number of extensions: 1776475
Number of successful extensions: 1388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1353
Number of HSP's successfully gapped: 29
Length of query: 374
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 276
Effective length of database: 6,590,910
Effective search space: 1819091160
Effective search space used: 1819091160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)