RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11868
(374 letters)
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 326 bits (838), Expect = e-113
Identities = 134/174 (77%), Positives = 155/174 (89%), Gaps = 1/174 (0%)
Query: 202 PSKEDIISATEASGEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHI 260
PSKE++++AT+A G + + DSAIIHTSMGDIH +LF EC KTVENFCVHS+N YYNGH
Sbjct: 3 PSKEEVMAATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHT 62
Query: 261 FHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQF 320
FHR+IKGFMIQTGDPTGTG GG+SIWGGEF+DEF S L+HDRPYT+SMANAG NTNGSQF
Sbjct: 63 FHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQF 122
Query: 321 FITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISVK 374
FIT+ PTPWLDNKHTVFGRVTKGMEVVQ ISNVK N KTD+PY+D+ +I+I+VK
Sbjct: 123 FITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 176
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 306 bits (786), Expect = e-105
Identities = 77/190 (40%), Positives = 109/190 (57%), Gaps = 2/190 (1%)
Query: 185 PADIKSPETDRDVFNEKPSKEDIISATEASGEQVLYDSAIIHTSMGDIHLQLF-KECAKT 243
D + +V +EK + A I+T++GD ++L+ KT
Sbjct: 3 SDDEEEESNAINVVSEKTKSLEEKIAYYKMKGHTERGYITIYTNLGDFEVELYWYHSPKT 62
Query: 244 VENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRP 303
NF + +Y+ IFHRVI F+IQ GDPTGTG GG+SI+G F+DE LKH
Sbjct: 63 CLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGA 122
Query: 304 YTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPY 363
+SM+N GPNTN SQFFITL P P LD KHT+F RV+K M ++NI++V+T T++P
Sbjct: 123 GILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTT-ATNKPI 181
Query: 364 DDIQVISISV 373
D++++ S
Sbjct: 182 FDLKILRTST 191
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 298 bits (765), Expect = e-102
Identities = 100/155 (64%), Positives = 124/155 (80%), Gaps = 2/155 (1%)
Query: 221 DSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTG 279
SAII+T+MGDIH+ LF KEC KTV+NF VHS N YYN IFHRVIK FM+QTGDP+G G
Sbjct: 6 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDG 65
Query: 280 TGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGR 339
TGG+SIWG EF+DEF HL H +P+ VSMAN GPNTNGSQFFIT P PWLD KHTVFG+
Sbjct: 66 TGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGK 125
Query: 340 VTKGMEVVQNISNVKTNHKTDQPYDDIQVISISVK 374
VT+G ++V +I V+T+ K D+P +DI++++I +
Sbjct: 126 VTQGSKIVLDIEKVRTD-KRDKPLEDIKILNIKIN 159
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 286 bits (734), Expect = 1e-97
Identities = 81/153 (52%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGT 280
S +HT +GDI +++F + KT ENF +NYYNG IFHR IKGFM+QTGDPTGTG
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61
Query: 281 GGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
GG SIWG +F+DE+ +LKH+ VSMAN GPNTNGSQFFIT P LD K+TVFG+V
Sbjct: 62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121
Query: 341 TKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
G+E + + + N KT +P +D+ + I++
Sbjct: 122 IDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 285 bits (731), Expect = 4e-97
Identities = 79/154 (51%), Positives = 105/154 (68%), Gaps = 2/154 (1%)
Query: 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGT 280
+ + TSMG I L+L+ K KT +NF ++ YYNG FHR+IK FMIQ GDPTGTG
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 281 GGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
GG SI+G +F+DE LK ++MANAGP+TNGSQFF+TL PT WLD KHT+FGRV
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 341 TKGMEVVQNISNVKTNHKTDQPYDDIQVISISVK 374
+G+ +V + V+TN + D+P DD+++I
Sbjct: 133 CQGIGMVNRVGMVETNSQ-DRPVDDVKIIKAYPS 165
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 286 bits (733), Expect = 6e-97
Identities = 79/153 (51%), Positives = 105/153 (68%), Gaps = 2/153 (1%)
Query: 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGT 280
+ + TSMG I L+L+ K KT +NF ++ YYNG FHR+IK FMIQ GDPTGTG
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 281 GGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
GG SI+G +F+DE LK ++MANAGP+TNGSQFF+TL PT WLD KHT+FGRV
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 341 TKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
+G+ +V + V+TN + D+P DD+++I
Sbjct: 133 CQGIGMVNRVGMVETNSQ-DRPVDDVKIIKAYP 164
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 279 bits (715), Expect = 2e-94
Identities = 69/170 (40%), Positives = 101/170 (59%), Gaps = 6/170 (3%)
Query: 209 SATEASGEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKG 267
+ E + + I T+ GD+ +LF +C K +NF S + YY IFH+ IKG
Sbjct: 5 HHHSSGRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKG 64
Query: 268 FMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAG----PNTNGSQFFIT 323
F+IQ GDPTGTG GG+SI+G F DE LK+DR +SMA+ G PNTNGSQFFIT
Sbjct: 65 FIIQGGDPTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFIT 124
Query: 324 LTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
+ P L+ ++ +FG++ G E + + N ++ K+ +P D+I + I +
Sbjct: 125 YSSLPQLNGEYVIFGKLIDGFETLNTLENCPSD-KSHKPIDEIIIKDIVI 173
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 279 bits (715), Expect = 2e-94
Identities = 76/152 (50%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Query: 223 AIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG 281
+HT+ GD++L+L KT ENF K +YY+G IFHR I+ F+IQ GDPTGTGTG
Sbjct: 22 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 81
Query: 282 GQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVT 341
G+S WG FKDEF+ +L H +SMAN+GPN+N SQFFIT +LD KHT+FGRV
Sbjct: 82 GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 141
Query: 342 KGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
G +V+ + NV+++ KTD+P ++I++ + +V
Sbjct: 142 GGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 278 bits (714), Expect = 3e-94
Identities = 68/154 (44%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
Query: 222 SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGT 280
++ T+ GDI ++L+ KE K NF YY+ IFHRV+ GF++Q GDPTGTG+
Sbjct: 26 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGS 85
Query: 281 GGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
GG+SI+G FKDEF S L+ +R V+MANAG + NGSQFF TL L+NKHT+FG+V
Sbjct: 86 GGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 145
Query: 341 T-KGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
T + + +S V + ++P++ ++ S V
Sbjct: 146 TGDTVYNMLRLSEVDID-DDERPHNPHKIKSCEV 178
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 267 bits (685), Expect = 7e-90
Identities = 80/194 (41%), Positives = 109/194 (56%), Gaps = 25/194 (12%)
Query: 198 FNEKPSKEDIISATEASGEQVLYDSAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNN-- 254
+ S D S T + +A +HT+ GDI + LF KTV NF ++
Sbjct: 4 HHHHHSGADCDSVTNSPLATA---TATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKD 60
Query: 255 -------------YYNGHIFHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHD 301
+Y+G +FHRVI+GFMIQ GDPTGTG GG G +F DEF L+ D
Sbjct: 61 YSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGG---PGYKFADEFHPELQFD 117
Query: 302 RPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVT--KGMEVVQNISNVKTNHKT 359
+PY ++MANAGP TNGSQFFIT+ TP L+ +HT+FG V + VV+ IS T+
Sbjct: 118 KPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGN- 176
Query: 360 DQPYDDIQVISISV 373
D+P D + + SI++
Sbjct: 177 DRPTDPVVIESITI 190
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 266 bits (681), Expect = 4e-89
Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 14/164 (8%)
Query: 223 AIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRVIKGFMIQTG-----DPT 276
I T+ G ++++L + ++F Y++ IFHR I+ FMIQ G P+
Sbjct: 9 LRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPS 68
Query: 277 GTGTGGQSI-------WGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPW 329
QS G F+DEF + L H +SMAN G ++N S+FFIT
Sbjct: 69 KKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEH 128
Query: 330 LDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
L+NKHT+FGRV G++V++ ++T+ K D+P +V I V
Sbjct: 129 LNNKHTIFGRVVGGLDVLRQWEKLETD-KKDKPLKPPKVEEIIV 171
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 258 bits (660), Expect = 2e-85
Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 25/186 (13%)
Query: 212 EASGEQVLYD------SAIIHTSMGDIHLQLF-KECAKTVENFCVHSKNNYYNGHIFHRV 264
+SG + LY ++HTS+GD+ ++L+ +EC NF YY IFHRV
Sbjct: 7 HSSGRENLYFQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRV 66
Query: 265 IKGFMIQTGDPTGTGTGG--QSIWGGEFKDEFKSHLKHDRPYTVSMANAGPN-------- 314
+K F++Q GDPTGTG GG + G F E LK V +AN G +
Sbjct: 67 VKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDE 126
Query: 315 ------TNGSQFFITLTPTPWLDNKHTVFGRVT-KGMEVVQNISNVKTNHKTDQPYDDIQ 367
TNG+QFFITL L+N +T+FG+VT + + ++++ K D+P
Sbjct: 127 RGRSLGTNGNQFFITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVG-KEDRPMTPPF 185
Query: 368 VISISV 373
+ S+ V
Sbjct: 186 IKSVDV 191
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 201 bits (515), Expect = 1e-64
Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 223 AIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG 281
+HT+ G I L+L + A KTVENF + K +Y+G IFHRVI GFMIQ G
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQ 65
Query: 282 GQSIWGGEFKDEFKSHLKHDRPYTVSMA-NAGPNTNGSQFFITLTPTPWLDNK------- 333
+ +E + LK+D YT++MA P++ +QFFI + +L++
Sbjct: 66 KPT--DAPIANEANNGLKNDT-YTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGW 122
Query: 334 -HTVFGRVTKGMEVVQNISNVKTNHKT---DQPYDDIQVISISV 373
+ VFG+V +G ++V I VKT K D P DD+ + V
Sbjct: 123 GYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVV 166
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 202 bits (516), Expect = 1e-64
Identities = 72/167 (43%), Positives = 102/167 (61%), Gaps = 17/167 (10%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---C--------VHSKNNYYNGHIFHRV 264
+ +D AI + G + +LF + C KT ENF C K +Y +FHRV
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 265 IKGFMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFI 322
+K FM+Q GD + G G GG+SI+GG F+DE F +KH++ + +SMAN G +TNGSQFFI
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFA--VKHNKEFLLSMANRGKDTNGSQFFI 128
Query: 323 TLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVI 369
T PTP LD H VFG+V G EVV+ I N KT+ +P+ +++++
Sbjct: 129 TTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAA-SKPFAEVRIL 174
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 202 bits (516), Expect = 2e-64
Identities = 80/167 (47%), Positives = 100/167 (59%), Gaps = 17/167 (10%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---C--------VHSKNNYYNGHIFHRV 264
+V D I G I ++L+ + +T NF C + K +Y G FHRV
Sbjct: 8 RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRV 67
Query: 265 IKGFMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFI 322
IK FMIQ GD T G GTGG+SI+GG F DE F +KHD P+ VSMAN GPNTNGSQFFI
Sbjct: 68 IKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFV--MKHDEPFVVSMANKGPNTNGSQFFI 125
Query: 323 TLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVI 369
T TP P L+N H VFG+V G EVV I +KTN ++P D+ ++
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTN-SKNRPLADVVIL 171
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 201 bits (514), Expect = 2e-64
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 223 AIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG 281
HT+ GDI ++ F + A +TV+NF + + +YN IFHRVI GFMIQ G
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 282 GQSIWGGEFKDEFKSHLKHDRPYTVSMA-NAGPNTNGSQFFITLTPTPWLDNK------- 333
K+E + LK+ R T++MA P++ +QFFI + +L+
Sbjct: 62 K--ATKEPIKNEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 334 -HTVFGRVTKGMEVVQNISNVKTNHKT---DQPYDDIQVISISV 373
+ VF V GM+ V I V T D P +D+ + S++V
Sbjct: 119 GYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 202 bits (516), Expect = 2e-64
Identities = 81/167 (48%), Positives = 99/167 (59%), Gaps = 17/167 (10%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---C--------VHSKNNYYNGHIFHRV 264
Q +D I +G I QLF + C KT +NF C K Y G FHRV
Sbjct: 21 QCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRV 80
Query: 265 IKGFMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFI 322
+K FMIQ GD + G G GG+SI+GG FKDE F LKHDR + +SMAN G +TNGSQFFI
Sbjct: 81 VKNFMIQGGDFSEGNGKGGESIYGGYFKDENFI--LKHDRAFLLSMANRGKHTNGSQFFI 138
Query: 323 TLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVI 369
T P P LD H VFG V G EV++ I N+KT+ +PY D++VI
Sbjct: 139 TTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAA-SRPYADVRVI 184
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 198 bits (507), Expect = 3e-63
Identities = 73/165 (44%), Positives = 94/165 (56%), Gaps = 15/165 (9%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNN-----YYNGHIFHRVIKG 267
V +D +I +G + ++LF + KT ENF C Y G FHRVIK
Sbjct: 12 VVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKD 71
Query: 268 FMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLT 325
FMIQ GD G GTG SI+ G F DE FK L+H P +SMAN+GP+TNG QFFIT +
Sbjct: 72 FMIQGGDFVNGDGTGVASIYRGPFADENFK--LRHSAPGLLSMANSGPSTNGCQFFITCS 129
Query: 326 PTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
WLD KH VFG++ G+ V++ I NV T ++P + VIS
Sbjct: 130 KCDWLDGKHVVFGKIIDGLLVMRKIENVPTG-PNNKPKLPV-VIS 172
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 195 bits (497), Expect = 6e-62
Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 13/161 (8%)
Query: 223 AIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG 281
++ TS G+I L+L K+ A +V+NF + + +YN FHRVI GFMIQ G T
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ 66
Query: 282 GQSIWGGEFKDEFKSHLKHDRPYTVSMA-NAGPNTNGSQFFITLTPTPWLDN-----KHT 335
+ K+E + L++ R T++MA A ++ SQFFI + +LD+ +
Sbjct: 67 KKP--NPPIKNEADNGLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYA 123
Query: 336 VFGRVTKGMEVVQNISNVKTNHKT---DQPYDDIQVISISV 373
VFG+V KGM+V IS V T+ + P + ++S +V
Sbjct: 124 VFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 195 bits (499), Expect = 8e-62
Identities = 81/160 (50%), Positives = 100/160 (62%), Gaps = 10/160 (6%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
+V +D I +G + LF K KTV+NF K Y FHRVIK FMIQ
Sbjct: 17 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQG 76
Query: 273 GDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
GD T G GTGG+SI+G F DE FK LKH P VSMANAG +TNGSQFFIT T WL
Sbjct: 77 GDFTRGDGTGGKSIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWL 134
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
D KH VFG+V +GMEVV+ + + KT+ + D+P D+ +I+
Sbjct: 135 DGKHVVFGKVLEGMEVVRKVESTKTDSR-DKPLKDV-IIA 172
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 194 bits (495), Expect = 2e-61
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 15/159 (9%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNNY------YNGHIFHRVIK 266
+V +D +I +++ G I +LF + +T ENF C K Y IFHR+I
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64
Query: 267 GFMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITL 324
FM Q GD T G G+GG+SI+G F DE F +KHD+P +SMANAGPNTN SQFFITL
Sbjct: 65 QFMCQGGDITNGNGSGGESIYGRSFTDENFN--MKHDQPGLLSMANAGPNTNSSQFFITL 122
Query: 325 TPTPWLDNKHTVFGRVTKGMEVVQNISNVKT-NHKTDQP 362
P PWLD KH VFG+V +GM VV+ + + +
Sbjct: 123 VPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRS 161
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 194 bits (495), Expect = 3e-61
Identities = 77/160 (48%), Positives = 95/160 (59%), Gaps = 16/160 (10%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENFC----------VHSKNNYYNGHIFHRVI 265
V +D +I T G I ++LF + T ENF K Y G FHR+I
Sbjct: 21 VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRII 80
Query: 266 KGFMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFIT 323
FMIQ GD T G GTGG+SI+G +F+DE F HD P+ +SMANAGPNTNGSQFFIT
Sbjct: 81 PQFMIQGGDFTRGDGTGGESIYGSKFRDENFV--YTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 324 LTPTPWLDNKHTVFGRVTKGMEVVQNISNVKT-NHKTDQP 362
P PWLD KH VFG+V +GMEVV++I + N K +
Sbjct: 139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKS 178
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 194 bits (495), Expect = 3e-61
Identities = 71/160 (44%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
V +D S+G I ++L + KT +NF C K Y G FHR+I GFM+Q
Sbjct: 29 NVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQG 88
Query: 273 GDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
GD T GTGG+SI+G +F DE F+ LKH + +SMAN G +TNGSQFFITL T WL
Sbjct: 89 GDYTAHNGTGGRSIYGEKFPDENFE--LKHTKEGILSMANCGAHTNGSQFFITLGKTQWL 146
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
D KH VFG V +GM+VV I+ + + I I
Sbjct: 147 DEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRI-EIR 185
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 195 bits (498), Expect = 3e-61
Identities = 66/167 (39%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---C-----VHSKNNYYNGHIFHRVIKG 267
V D + + +G +LF+ KT ENF C V++ Y IFHRVIK
Sbjct: 61 VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE 120
Query: 268 FMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLT 325
FMIQ GD G+G SI+G +F DE F +KHD+ +SMAN+GPNTNG QFFIT
Sbjct: 121 FMIQGGDFINHNGSGSLSIYGEKFDDENFD--IKHDKEGLLSMANSGPNTNGCQFFITTK 178
Query: 326 PTPWLDNKHTVFGRV--TKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
WLD K+ VFGR+ + +++ I NV +P I +
Sbjct: 179 KCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPI-NVV 224
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 193 bits (493), Expect = 4e-61
Identities = 69/160 (43%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENFC----------VHSKNNYYNGHIFHRVI 265
+V +D I + G I ++L+ + KT NF K ++ G FHR+I
Sbjct: 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 266 KGFMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFIT 323
FMIQ GD T G GTGG+SI+G +F DE FK KH P +SMANAGPNTNGSQFF+
Sbjct: 65 PNFMIQGGDFTRGNGTGGESIYGEKFPDENFK--EKHTGPGVLSMANAGPNTNGSQFFLC 122
Query: 324 LTPTPWLDNKHTVFGRVTKGMEVVQNISNVKT-NHKTDQP 362
T WLD KH VFGRV +G++VV+ + + + + K +
Sbjct: 123 TVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKD 162
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 191 bits (488), Expect = 2e-60
Identities = 68/153 (44%), Positives = 91/153 (59%), Gaps = 9/153 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
+V +D I + G I ++L + +T ENF C + Y+ FHRVI FM Q
Sbjct: 12 RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQG 71
Query: 273 GDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
GD G GTGG+SI+G +F DE F+ L+H+ +SMAN+GPNTNGSQFFI T WL
Sbjct: 72 GDFVKGDGTGGKSIYGRKFDDENFQ--LRHEGFGVLSMANSGPNTNGSQFFICTTKCDWL 129
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKT-NHKTDQP 362
D KH VFGRV G VV+ + +V + + K +P
Sbjct: 130 DGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEP 162
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 190 bits (486), Expect = 4e-60
Identities = 78/160 (48%), Positives = 94/160 (58%), Gaps = 11/160 (6%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
+V +D I +G I + LF K+ T ENF C Y IFHRVI+ FMIQ
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQG 72
Query: 273 GDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
GD T GTGG+SI+G +F DE +KH +SMANAGPNTNGSQFFIT PTPWL
Sbjct: 73 GDFTNFDGTGGKSIYGEKFADENLN--VKH-FVGALSMANAGPNTNGSQFFITTAPTPWL 129
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
D +H VFG+V GM+VV I KTN D+P + I
Sbjct: 130 DGRHVVFGKVLDGMDVVLRIEKTKTNSH-DRPVKPV-KIV 167
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 190 bits (484), Expect = 7e-60
Identities = 71/153 (46%), Positives = 88/153 (57%), Gaps = 9/153 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
QV D I + G I + L T ENF C H K + G FHR+I FM Q
Sbjct: 13 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 72
Query: 273 GDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
GD T GTGG+SI+G +F DE F LKH P +SMAN+GPNTNGSQFF+T T WL
Sbjct: 73 GDFTNHNGTGGKSIYGKKFDDENFI--LKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 130
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKT-NHKTDQP 362
D KH VFG VT+G++V++ I + + K Q
Sbjct: 131 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQK 163
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 189 bits (483), Expect = 1e-59
Identities = 72/153 (47%), Positives = 87/153 (56%), Gaps = 9/153 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
V D +G + L+L + KT ENF C K Y G FHRVI FM Q
Sbjct: 5 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 64
Query: 273 GDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
GD T GTGG+SI+G F DE F LKH P +SMANAGPNTNGSQFFI T WL
Sbjct: 65 GDFTNHNGTGGKSIYGSRFPDENFT--LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 122
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKT-NHKTDQP 362
D KH VFG V +GM+VV+ I + + + +T +
Sbjct: 123 DGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKK 155
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 189 bits (482), Expect = 1e-59
Identities = 68/153 (44%), Positives = 91/153 (59%), Gaps = 9/153 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
V ++ +I G I +L+ E KT +NF Y IFHRVI FM+Q
Sbjct: 4 NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQG 63
Query: 273 GDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
GD T GTGG+SI+G +F DE F+ +KH +P +SMANAG NTNGSQFFIT PT WL
Sbjct: 64 GDFTRHNGTGGKSIYGEKFADENFQ--VKHTKPGLLSMANAGANTNGSQFFITTVPTSWL 121
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKT-NHKTDQP 362
D KH VFG V +G+++V+ + + + KT+
Sbjct: 122 DGKHVVFGEVIEGLDIVRKVEGKGSASGKTNAT 154
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 195 bits (497), Expect = 2e-59
Identities = 76/168 (45%), Positives = 98/168 (58%), Gaps = 19/168 (11%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENFC-----------VHSKNNYYNGHIFHRV 264
+V +D I +G I L+LF + KT ENF K ++ G FHR+
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 265 IKGFMIQTGDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFI 322
IK FMIQ GD + GTGG+SI+G +F+DE F KHD+ +SMANAG NTNGSQFFI
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFH--YKHDKEGLLSMANAGSNTNGSQFFI 134
Query: 323 TLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
T PTP LD KH VFG+V KGM V + + NV+ ++P VI+
Sbjct: 135 TTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVK--GEKPAKLC-VIA 179
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 188 bits (479), Expect = 4e-59
Identities = 70/158 (44%), Positives = 85/158 (53%), Gaps = 11/158 (6%)
Query: 221 DSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQTGDPT 276
T +G I LF K+ KT +NF C Y FHR+I FMIQ GD T
Sbjct: 13 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFT 72
Query: 277 -GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKH 334
G GTGG+SI+G +F DE F KHD+ +SMANAGPNTNGSQFFIT T WLD KH
Sbjct: 73 RGNGTGGRSIYGDKFADENFS--RKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKH 130
Query: 335 TVFGRVT--KGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
VFG V K VV+ I + ++ + + I
Sbjct: 131 VVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRP-KIV 167
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 188 bits (480), Expect = 4e-59
Identities = 72/153 (47%), Positives = 91/153 (59%), Gaps = 9/153 (5%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
V +D A+ +G + +LF + KT ENF K Y G FHR+I GFM Q
Sbjct: 24 TVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQG 83
Query: 273 GDPT-GTGTGGQSIWGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
GD T GTGG+SI+G +F+DE F LKH P +SMANAGPNTNGSQFFI T WL
Sbjct: 84 GDFTRHNGTGGKSIYGEKFEDENFI--LKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 141
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKT-NHKTDQP 362
D KH VFG+V +GM +V+ + + N KT +
Sbjct: 142 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKK 174
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 179 bits (456), Expect = 6e-55
Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 40/190 (21%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKE-CAKTVENF---C-----------------VHSKNNY 255
+V D + + +G + ++LF++ VENF N
Sbjct: 16 RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 256 YNGHIFHRVIKGFMIQTGDPT-GTGTGGQSIWGGEFKDE----FKSHLKHDRPYTVSMA- 309
Y G FH V+ I +GD G+ +++ E + H+ +S+
Sbjct: 76 YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYF--YPHESKGLLSLVP 133
Query: 310 ---NAGPNTNGSQFFITL------TPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTD 360
+G S F ITL LD V G+V G++V+ I+++
Sbjct: 134 YTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKP-YAG 192
Query: 361 QPYDDIQVIS 370
+ Y I
Sbjct: 193 RKYPTF-SIG 201
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 151 bits (383), Expect = 1e-42
Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 36/163 (22%)
Query: 223 AIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG 281
+ + L A T NF + ++Y+G R GF++QTGDP G G
Sbjct: 181 DNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSD-GFVVQTGDPEGPAEG 239
Query: 282 GQSIWGGE---FKDEFKSH----------------------LKHDRPYTVSMANAG--PN 314
+ E + + T++MA +
Sbjct: 240 FIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFEND 299
Query: 315 TNGSQFFI-------TLTPTPWLDNKHTVFGRVTKGMEVVQNI 350
+ SQ F T + + LD ++ VFG VT + + ++
Sbjct: 300 SGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADL 342
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 9e-06
Identities = 55/395 (13%), Positives = 106/395 (26%), Gaps = 129/395 (32%)
Query: 1 VRVFSFLSGKL--TRVYDESLARFAELKLSETEPVRVFSFLSGKLTRVYDESLARFAD-L 57
F+ L TR + + F L + T + + LT DE + L
Sbjct: 259 WNAFNLSCKILLTTR--FKQVTDF--LSAATTTHISLDHHSMT-LTP--DEVKSLLLKYL 311
Query: 58 QKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSGFIVLYATMLGVKFVNIVTNQC 117
Q LP R++ + LS ++ +
Sbjct: 312 DCRPQDLP-----------REVLTTNPRRLS---------------IIAESIRD------ 339
Query: 118 VRFIGKPENLRLLHLSLFQGKVKTRKAATTLEMEAAKNPTLEAIQPDPTLFCTGFNKNRF 177
+ +N + V K T +E +L ++P + F
Sbjct: 340 --GLATWDNWK---------HVNCDKLTTIIES------SLNVLEPAEY-------RKMF 375
Query: 178 Y---LFSRREPADIKSPETDRDVF----NEKPSKEDIISATEASGEQVL---YDSAIIHT 227
+F P P + + + ++ + ++ + I
Sbjct: 376 DRLSVF----PPSAHIPT---ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS- 427
Query: 228 SMGDIHLQLFKECAKTVENFCVHSK--NNYYNGHIFHRVIKGFMIQTGDPTGTGTGGQSI 285
I + K + +H ++Y + K F D
Sbjct: 428 ----IPSIYLELKVKLENEYALHRSIVDHY-------NIPKTF-----DSDDLIP----- 466
Query: 286 WGGEFKDE-FKSHLKHDRPYTVSMANAGPNTNGSQF---FITLTPTPWLDNK--HTVFGR 339
+ D+ F SH+ H + N + F F+ +L+ K H
Sbjct: 467 ---PYLDQYFYSHIGH------HLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAW 514
Query: 340 VTKG--MEVVQNISNVKTNHKTDQ-PYDDIQVISI 371
G + +Q + K + D P + V +I
Sbjct: 515 NASGSILNTLQQLKFYK-PYICDNDPKYERLVNAI 548
Score = 31.0 bits (69), Expect = 0.79
Identities = 27/214 (12%), Positives = 61/214 (28%), Gaps = 49/214 (22%)
Query: 187 DIKS-PETDRDVFNEKPSKEDIISATEASGEQVLYDSAIIHTSMGDIHLQLFKECAKTVE 245
D K + + + +++ I+S SG L+ + L + + V+
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-------------LLSKQEEMVQ 80
Query: 246 NFCVHS-KNNYYNGHIFHRVIKGFMIQTGDPTG--------TGTGGQ-----SIWGGEFK 291
F + NY + IK Q T Q ++ +
Sbjct: 81 KFVEEVLRINY--KFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 292 DEFKSHLKHDRP--YTV--SMANAGPNT---NGSQFFITLTPTP----WLDNKHTVFGRV 340
+ + L RP + + +G + + WL+
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNC 192
Query: 341 TKGMEVVQNISNVKTNHKTDQPYDDIQVISISVK 374
V++ + + ++ D + S ++K
Sbjct: 193 NSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIK 224
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 42.1 bits (99), Expect = 1e-04
Identities = 4/39 (10%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 315 TNGSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNV 353
T D +F ++ K ++ +
Sbjct: 12 VKPEVKPETHINLKVSDGSSEIFFKIKKTT-PLRRLMEA 49
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 68/371 (18%), Positives = 106/371 (28%), Gaps = 141/371 (38%)
Query: 4 FSF-LSGKLTRVYDESLARFA-ELKLSETEPVRVFSFLSGKLTRVYD----------ESL 51
S L G + LA + KL P + S+L G +S
Sbjct: 236 ISCPLIG-VI-----QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 52 ARFADL-QKAKQQLPNMEF--GRRMATERDLEKSEQLSLSNVLFDDS-----GFIVLYAT 103
F +KA L F G R E SL + +DS G +
Sbjct: 290 ESFFVSVRKAITVL----FFIGVR-CYEA----YPNTSLPPSILEDSLENNEGV----PS 336
Query: 104 -MLGV---------KFVNIVTNQCV---------------RFI--GKPENLRLLHLSLFQ 136
ML + +VN TN + + G P++L L+L+L
Sbjct: 337 PMLSISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL-- 393
Query: 137 GKVKTRKAATTLEMEAAKNPTLEAIQPDPTLFCTGFNKNRFYLFSRREPA------DIKS 190
RKA ++ ++ P FS R+ + S
Sbjct: 394 -----RKAKAPSGLDQSRIP-----------------------FSERKLKFSNRFLPVAS 425
Query: 191 PETDRDVFNE---KPSKEDIISATEASGEQVLYDSA-----IIHTSMGDIHLQLFKEC-- 240
P F+ P+ + I + V +++ + T G L++
Sbjct: 426 P------FHSHLLVPASDLINK--DLVKNNVSFNAKDIQIPVYDTFDGS-DLRVLSGSIS 476
Query: 241 ---AKTVENFCVH--SKNNYYNGHI--FHRVIKGFMIQTGDPTG---TGTGGQSIWGGEF 290
+ V + + HI F G G T GTG + I G
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGP---GGASGLGVLTHRNKDGTGVRVIVAGTL 533
Query: 291 K----DE--FK 295
D+ FK
Sbjct: 534 DINPDDDYGFK 544
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 30.1 bits (68), Expect = 1.5
Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 274 DPTGTGTGGQSIWGGEF 290
D G G G +WGGE
Sbjct: 413 DGIGMGENGA-LWGGEC 428
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 29.4 bits (66), Expect = 2.1
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 262 HRVIKGFMIQTGDPTGTGTGGQSIWGGEF 290
H + + + D TG GT G ++WG E
Sbjct: 495 HNLDEKVIGIAYDGTGYGTDG-NVWGAEI 522
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.4
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 138 KVKTRKAATTLEMEAAKN-PTLEAIQ 162
K +K +L++ A + P L AI+
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-AIK 43
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 28.7 bits (64), Expect = 3.6
Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 1 VRVFSFLSGKLTRVYDESLA----RFAELKLSETEPVRVFSFLSGKLTRVYDESLARFAD 56
+ +FS L + ++ R+ L E ++ L ++ + R
Sbjct: 18 LGIFSCLCLP-ELL---KVSGVCKRWYRLASDE----SLWQTLDLTGKNLHPDVTGRLLS 69
Query: 57 LQKAKQQLPNMEFGRRMATERDLEKSEQLSLSNVLFDDSGFIVLYATMLGVKFVNI---- 112
+ P + +A + + + LSN + + S + + ++ +++
Sbjct: 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129
Query: 113 VTNQCVRFIGKPENLRLLHLS 133
+++ V + K NL L+LS
Sbjct: 130 LSDPIVNTLAKNSNLVRLNLS 150
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 27.4 bits (61), Expect = 6.8
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 290 FKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFG 338
EF L+ + ++ + G + G + P LD K V G
Sbjct: 10 MDIEFVD-LEGSDAHDLAYS-LGASL-GERL---HQEVPDLDLKALVDG 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,532,620
Number of extensions: 323666
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 45
Length of query: 374
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 279
Effective length of database: 4,049,298
Effective search space: 1129754142
Effective search space used: 1129754142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)