RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11868
(374 letters)
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 169 bits (429), Expect = 4e-52
Identities = 76/152 (50%), Positives = 107/152 (70%), Gaps = 1/152 (0%)
Query: 223 AIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG 281
+HT+ GD++L+L + KT ENF K +YY+G IFHR I+ F+IQ GDPTGTGTG
Sbjct: 3 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 62
Query: 282 GQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVT 341
G+S WG FKDEF+ +L H +SMAN+GPN+N SQFFIT +LD KHT+FGRV
Sbjct: 63 GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 122
Query: 342 KGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
G +V+ + NV+++ KTD+P ++I++ + +V
Sbjct: 123 GGFDVLTAMENVESDPKTDRPKEEIRIDATTV 154
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 161 bits (409), Expect = 2e-49
Identities = 79/149 (53%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
Query: 223 AIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG 281
+ TSMG I L+L+ + A KT +NF ++ YYNG FHR+IK FMIQ GDPTGTG G
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 282 GQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVT 341
G SI+G +F+DE LK ++MANAGP+TNGSQFF+TL PT WLD KHT+FGRV
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVC 133
Query: 342 KGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
+G+ +V + V+TN D+P DD+++I
Sbjct: 134 QGIGMVNRVGMVETN-SQDRPVDDVKIIK 161
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 157 bits (398), Expect = 7e-48
Identities = 126/164 (76%), Positives = 143/164 (87%), Gaps = 1/164 (0%)
Query: 212 EASGEQVLYDSAIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMI 270
+A G + + DSAIIHTSMGDIH +LF KTVENFCVHS+N YYNGH FHR+IKGFMI
Sbjct: 1 QAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMI 60
Query: 271 QTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
QTGDPTGTG GG+SIWGGEF+DEF S L+HDRPYT+SMANAG NTNGSQFFIT+ PTPWL
Sbjct: 61 QTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWL 120
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISVK 374
DNKHTVFGRVTKGMEVVQ ISNVK N KTD+PY+D+ +I+I+VK
Sbjct: 121 DNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 164
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 157 bits (398), Expect = 7e-48
Identities = 82/153 (53%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 222 SAIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGT 280
S +HT +GDI +++F E KT ENF +NYYNG IFHR IKGFM+QTGDPTGTG
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61
Query: 281 GGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
GG SIWG +F+DE+ +LKH+ VSMAN GPNTNGSQFFIT P LD K+TVFG+V
Sbjct: 62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121
Query: 341 TKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
G+E + + + N KT +P +D+ + I++
Sbjct: 122 IDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 153 bits (387), Expect = 4e-46
Identities = 75/162 (46%), Positives = 92/162 (56%), Gaps = 8/162 (4%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
V +D +G I +LF + KT NF C K Y G FHRVI FM+Q
Sbjct: 3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQG 62
Query: 273 GDPT-GTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLD 331
GD T G GTGG+SI+G +F DE LKH++P +SMANAGPNTNGSQFFIT T WLD
Sbjct: 63 GDFTAGNGTGGKSIYGAKFADEN-FQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLD 121
Query: 332 NKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
KH VFG V GM VV+ I + + +P I++ V
Sbjct: 122 GKHVVFGEVIDGMNVVKAIEAEGS--GSGKPRSRIEIAKCGV 161
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 148 bits (374), Expect = 2e-44
Identities = 97/153 (63%), Positives = 122/153 (79%), Gaps = 2/153 (1%)
Query: 222 SAIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGT 280
SAII+T+MGDIH+ LF + KTV+NF VHS N YYN IFHRVIK FM+QTGDP+G GT
Sbjct: 3 SAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGT 62
Query: 281 GGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV 340
GG+SIWG EF+DEF HL H +P+ VSMAN GPNTNGSQFFIT P PWLD KHTVFG+V
Sbjct: 63 GGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKV 122
Query: 341 TKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
T+G ++V +I V+T+ K D+P +DI++++I +
Sbjct: 123 TQGSKIVLDIEKVRTD-KRDKPLEDIKILNIKI 154
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 139 bits (350), Expect = 1e-40
Identities = 68/165 (41%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 217 QVLYD-----SAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKG 267
QV +D T +G I LF + KT +NF C Y FHR+I
Sbjct: 3 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPN 62
Query: 268 FMIQTGDP-TGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTP 326
FMIQ GD G GTGG+SI+G +F D KHD+ +SMANAGPNTNGSQFFIT
Sbjct: 63 FMIQGGDFTRGNGTGGRSIYGDKFAD-ENFSRKHDKKGILSMANAGPNTNGSQFFITTAV 121
Query: 327 TPWLDNKHTVFGRVT--KGMEVVQNISNVKTNHKTDQPYDDIQVI 369
T WLD KH VFG V K VV+ I + ++ + + +++
Sbjct: 122 TSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIV 166
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 139 bits (350), Expect = 2e-40
Identities = 71/164 (43%), Positives = 96/164 (58%), Gaps = 14/164 (8%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENFC---------VHSKNNYYNGHIFHRVIK 266
+V +D +I +++ G I +LF + +T ENF KN +Y IFHR+I
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64
Query: 267 GFMIQTGDP-TGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLT 325
FM Q GD G G+GG+SI+G F DE ++KHD+P +SMANAGPNTN SQFFITL
Sbjct: 65 QFMCQGGDITNGNGSGGESIYGRSFTDEN-FNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 326 PTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVI 369
P PWLD KH VFG+V +GM VV+ + K+ + +
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGA--KSGYVKRSVVIT 165
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 137 bits (345), Expect = 8e-40
Identities = 72/151 (47%), Positives = 101/151 (66%), Gaps = 2/151 (1%)
Query: 223 AIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTG 281
I+T++GD ++L+ + KT NF + +Y+ IFHRVI F+IQ GDPTGTG G
Sbjct: 19 ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 78
Query: 282 GQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRVT 341
G+SI+G F+DE LKH +SM+N GPNTN SQFFITL P P LD KHT+F RV+
Sbjct: 79 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 138
Query: 342 KGMEVVQNISNVKTNHKTDQPYDDIQVISIS 372
K M ++NI++V+T T++P D++++ S
Sbjct: 139 KNMTCIENIASVQTT-ATNKPIFDLKILRTS 168
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 136 bits (343), Expect = 2e-39
Identities = 71/166 (42%), Positives = 92/166 (55%), Gaps = 13/166 (7%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENFC-----------VHSKNNYYNGHIFHRV 264
+V D I G I ++L+ + A +T NF + K +Y G FHRV
Sbjct: 5 RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRV 64
Query: 265 IKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITL 324
IK FMIQ GD T G G D+ + +KHD P+ VSMAN GPNTNGSQFFIT
Sbjct: 65 IKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITT 124
Query: 325 TPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
TP P L+N H VFG+V G EVV I +KTN K ++P D+ +++
Sbjct: 125 TPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSK-NRPLADVVILN 169
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 133 bits (336), Expect = 1e-38
Identities = 71/161 (44%), Positives = 95/161 (59%), Gaps = 8/161 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLF-KECAKTVENF---CVHSKNNYYNGHIFHRVIKGFMIQTG 273
V +D I +G + + LF + KTVENF Y G IFHRVI+ FMIQ G
Sbjct: 8 VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGG 67
Query: 274 DPT-GTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
D T GTGG+SI+G + + ++ VSMANAGPN+NGSQFF+T PTPWLD
Sbjct: 68 DFTNFDGTGGKSIYG--TRFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDG 125
Query: 333 KHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
+H VFG+V +GM+VV+ + N KT D+P +++ V
Sbjct: 126 RHVVFGKVVEGMDVVKKVENTKTG-LNDKPKKAVKINDCGV 165
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 134 bits (337), Expect = 1e-38
Identities = 67/165 (40%), Positives = 92/165 (55%), Gaps = 15/165 (9%)
Query: 217 QVLYDSAIIHTSMGDIHLQLF-KECAKTVENF----------CVHSKNNYYNGHIFHRVI 265
+V +D I + G I ++L+ KT NF K ++ G FHR+I
Sbjct: 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 266 KGFMIQTGDP-TGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITL 324
FMIQ GD G GTGG+SI+G +F DE KH P +SMANAGPNTNGSQFF+
Sbjct: 65 PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKE-KHTGPGVLSMANAGPNTNGSQFFLCT 123
Query: 325 TPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVI 369
T WLD KH VFGRV +G++VV+ + + + ++ +P D +
Sbjct: 124 VKTEWLDGKHVVFGRVVEGLDVVKAVESNGS--QSGKPVKDCMIA 166
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 133 bits (336), Expect = 1e-38
Identities = 76/170 (44%), Positives = 102/170 (60%), Gaps = 22/170 (12%)
Query: 222 SAIIHTSMGDIHLQLFKECA-KTVENFCVHSKN---------------NYYNGHIFHRVI 265
+A +HT+ GDI + LF A KTV NF ++ +Y+G +FHRVI
Sbjct: 5 TATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVI 64
Query: 266 KGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLT 325
+GFMIQ GDPTGTG GG F DEF L+ D+PY ++MANAGP TNGSQFFIT+
Sbjct: 65 QGFMIQGGDPTGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVG 121
Query: 326 PTPWLDNKHTVFGRVT--KGMEVVQNISNVKTNHKTDQPYDDIQVISISV 373
TP L+ +HT+FG V + VV+ IS T+ D+P D + + SI++
Sbjct: 122 KTPHLNRRHTIFGEVIDAESQRVVEAISKTATDG-NDRPTDPVVIESITI 170
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 132 bits (333), Expect = 6e-38
Identities = 80/158 (50%), Positives = 92/158 (58%), Gaps = 7/158 (4%)
Query: 218 VLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQTG 273
V +D I +G I + LF KTVENF K Y G IFHRVIK FMIQ G
Sbjct: 10 VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGG 69
Query: 274 DPT-GTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
D T GTGG SI+G F DE LKH VSMANAGP+TNGSQFFITLT WLD
Sbjct: 70 DFTARDGTGGMSIYGETFPDENFK-LKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDG 128
Query: 333 KHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
KH VFG+V GM VV +I T+ D+P D +++
Sbjct: 129 KHVVFGKVLDGMTVVHSIELQATD-GHDRPLTDCTIVN 165
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 132 bits (333), Expect = 6e-38
Identities = 72/160 (45%), Positives = 94/160 (58%), Gaps = 8/160 (5%)
Query: 216 EQVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQ 271
++V +D I +G I + LF + KT NF K Y G FHRVI FMIQ
Sbjct: 7 DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQ 66
Query: 272 TGDPT-GTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWL 330
GD T G GTGG+SI+G +F D LKH +SMANAG +TNGSQFFIT TPWL
Sbjct: 67 GGDFTRGDGTGGRSIYGEKFAD-ENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWL 125
Query: 331 DNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
D +H VFG++ +GM+VV+ I + D+P D+ +I+
Sbjct: 126 DGRHVVFGKILEGMDVVRKIEQTEKLPG-DRPKQDV-IIA 163
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 130 bits (327), Expect = 7e-37
Identities = 76/174 (43%), Positives = 98/174 (56%), Gaps = 16/174 (9%)
Query: 210 ATEASGEQVLYDSAIIHTSMGDIHLQLFKECA-KTVENF-----------CVHSKNNYYN 257
+ S +V +D I +G I L+LF + KT ENF K ++
Sbjct: 9 PSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFK 68
Query: 258 GHIFHRVIKGFMIQTGD-PTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTN 316
G FHR+IK FMIQ GD GTGG+SI+G +F+DE H KHD+ +SMANAG NTN
Sbjct: 69 GCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDEN-FHYKHDKEGLLSMANAGSNTN 127
Query: 317 GSQFFITLTPTPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
GSQFFIT PTP LD KH VFG+V KGM V + + NV+ K ++P +
Sbjct: 128 GSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV--KGEKPAKLCVIAE 179
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 126 bits (318), Expect = 5e-36
Identities = 64/157 (40%), Positives = 78/157 (49%), Gaps = 6/157 (3%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
V D +G + L+L + KT ENF C K Y G FHRVI FM Q
Sbjct: 4 LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 63
Query: 273 GDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
GD T G G + LKH P +SMANAGPNTNGSQFFI T WLD
Sbjct: 64 GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123
Query: 333 KHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVI 369
KH VFG V +GM+VV+ I + + K+ + I +
Sbjct: 124 KHVVFGHVIEGMDVVKKIESFGS--KSGRTSKKIVIT 158
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 124 bits (313), Expect = 2e-35
Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 7/158 (4%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENF---CVHSKNNYYNGHIFHRVIKGFMIQT 272
QV D I + G I + L + T ENF C H K + G FHR+I FM Q
Sbjct: 3 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 62
Query: 273 GDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN 332
GD T G G+ D+ LKH P +SMAN+GPNTNGSQFF+T T WLD
Sbjct: 63 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 122
Query: 333 KHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
KH VFG VT+G++V++ I + K +P + +I+
Sbjct: 123 KHVVFGEVTEGLDVLRQIEAQGS--KDGKPKQKV-IIA 157
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 122 bits (306), Expect = 4e-34
Identities = 70/164 (42%), Positives = 92/164 (56%), Gaps = 13/164 (7%)
Query: 217 QVLYDSAIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNY--------YNGHIFHRVIKG 267
V +D +I +G + ++LF + KT ENF + Y G FHRVIK
Sbjct: 8 VVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKD 67
Query: 268 FMIQTGDPT-GTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTP 326
FMIQ GD G GTG SI+ G F DE L+H P +SMAN+GP+TNG QFFIT +
Sbjct: 68 FMIQGGDFVNGDGTGVASIYRGPFADEN-FKLRHSAPGLLSMANSGPSTNGCQFFITCSK 126
Query: 327 TPWLDNKHTVFGRVTKGMEVVQNISNVKTNHKTDQPYDDIQVIS 370
WLD KH VFG++ G+ V++ I NV T ++P + VIS
Sbjct: 127 CDWLDGKHVVFGKIIDGLLVMRKIENVPTG-PNNKPKLPV-VIS 168
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 121 bits (305), Expect = 9e-34
Identities = 63/171 (36%), Positives = 81/171 (47%), Gaps = 11/171 (6%)
Query: 210 ATEASGEQVLYDSAIIHTSMGDIHLQLFKECA-KTVENFCVHSKNNY--------YNGHI 260
T S V D + + +G +LF+ KT ENF Y Y I
Sbjct: 11 LTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTI 70
Query: 261 FHRVIKGFMIQTGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQF 320
FHRVIK FMIQ GD G GE D+ +KHD+ +SMAN+GPNTNG QF
Sbjct: 71 FHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQF 130
Query: 321 FITLTPTPWLDNKHTVFGRVTKG--MEVVQNISNVKTNHKTDQPYDDIQVI 369
FIT WLD K+ VFGR+ + +++ I NV +P I V+
Sbjct: 131 FITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVV 181
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 116 bits (292), Expect = 3e-32
Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 224 IIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGG 282
HT+ GDI ++ F + A +TV+NF + + +YN IFHRVI GFMIQ G
Sbjct: 3 TFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQK 62
Query: 283 QSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTP--------TPWLDNKH 334
K+E + LK+ R P++ +QFFI + +
Sbjct: 63 A--TKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGY 120
Query: 335 TVFGRVTKGMEVVQNISNVKTN---HKTDQPYDDIQVISISV 373
VF V GM+ V I V T D P +D+ + S++V
Sbjct: 121 CVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 109 bits (272), Expect = 3e-29
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 224 IIHTSMGDIHLQLFKECA-KTVENFCVHSKNNYYNGHIFHRVIKGFMIQTGDPTGTGTGG 282
++ TS G+I L+L K+ A +V+NF + + +YN FHRVI GFMIQ G T
Sbjct: 8 LLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQK 67
Query: 283 QSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNTNGSQFFITLTPTPWLDN-----KHTVF 337
+ K+E + L++ R A ++ SQFFI + +LD+ + VF
Sbjct: 68 K--PNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125
Query: 338 GRVTKGMEVVQNISNVKTNHK---TDQPYDDIQVISISV 373
G+V KGM+V IS V T+ + P + ++S +V
Sbjct: 126 GKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164
>d1uaxa_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 211
Score = 27.1 bits (59), Expect = 3.3
Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 8/104 (7%)
Query: 220 YDSAIIHTSMGDIHLQLFKECAKTVENFCVHSKNNYYNGHIFHRVIKGFM--------IQ 271
D + + + + ++ ++ + + F +IK +
Sbjct: 73 IDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEH 132
Query: 272 TGDPTGTGTGGQSIWGGEFKDEFKSHLKHDRPYTVSMANAGPNT 315
D SI +D LK S + P T
Sbjct: 133 KADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFGSGYPSDPRT 176
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 25.0 bits (54), Expect = 9.2
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 300 HDRPYTVSMANAGPNTNGSQFFITLTPTPWLDNKHTVFGRV-----TKGMEVVQNISNVK 354
D +++ N P + + + PT + FGRV G +V N
Sbjct: 18 ADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYA-FGRVFAGTVKSGQKVRIQGPNYV 76
Query: 355 TNHKTDQPYDDIQVISI 371
K D IQ + +
Sbjct: 77 PGKKDDLFIKAIQRVVL 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,341,002
Number of extensions: 61414
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 26
Length of query: 374
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,213,086
Effective search space: 348155682
Effective search space used: 348155682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)