BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11876
(68 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 65 DI 66
D+
Sbjct: 138 DV 139
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 41 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 131 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 65 DI 66
D+
Sbjct: 138 DV 139
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 41 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 131 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 65 DI 66
D+
Sbjct: 159 DV 160
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 62 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 119
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 152 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 65 DI 66
D+
Sbjct: 157 DV 158
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 60 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 117
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 150 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 65 DI 66
D+
Sbjct: 152 DV 153
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 55 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 112
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 145 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 65 DI 66
D+
Sbjct: 141 DV 142
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 44 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 101
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 134 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 65 DI 66
D+
Sbjct: 138 DV 139
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 41 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 131 DESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 65 DI 66
D+
Sbjct: 141 DV 142
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 44 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 101
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 134 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 65 DI 66
D+
Sbjct: 136 DV 137
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 39 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 96
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 129 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 65 DI 66
D+
Sbjct: 138 DV 139
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 41 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 131 DESVRIWDVKT-GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 65 DI 66
D+
Sbjct: 131 DV 132
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 34 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 91
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 124 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 65 DI 66
D+
Sbjct: 140 DV 141
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 43 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 100
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 133 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 65 DI 66
D+
Sbjct: 141 DV 142
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 44 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 101
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 134 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 65 DI 66
D+
Sbjct: 135 DV 136
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 38 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 95
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 128 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 65 DI 66
D+
Sbjct: 134 DV 135
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 37 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 94
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 127 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 65 DI 66
D+
Sbjct: 138 DV 139
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 41 LAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 98
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 131 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + + SDD T+ +WD + K ++TL+GHSN+V F+ + NL+V+ FD S+ W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 65 DI 66
D+
Sbjct: 135 DV 136
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D I +W A + K +T+ GH + ++ +SS NLLV+A D ++ WD++
Sbjct: 38 LASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 95
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D ++ +WD + K ++TL HS+ V + F+ +L+V++ +DG WD
Sbjct: 128 DESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D++V +C D IA+WD N +T VR QGH++ I+ S+ L T G D ++ +W
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 65 DINK 68
D+ +
Sbjct: 211 DLRE 214
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
+ AT S D T+ALWD RNLK ++ + + H + + +++S + +L ++G D ++ WD+
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 67 NK 68
+K
Sbjct: 356 SK 357
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTR--VRTLQGHSNWVKNIEFSS-KDNLLVTAGFDG 59
L +F + +DD + +WD RN T T+ H+ V + F+ + +L T D
Sbjct: 245 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 304
Query: 60 SIYTWDI 66
++ WD+
Sbjct: 305 TVALWDL 311
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
+ AT S D T+ALWD RNLK ++ + + H + + +++S + +L ++G D ++ WD+
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 67 NK 68
+K
Sbjct: 354 SK 355
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTR--VRTLQGHSNWVKNIEFSS-KDNLLVTAGFDG 59
L +F + +DD + +WD RN T T+ H+ V + F+ + +L T D
Sbjct: 243 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 302
Query: 60 SIYTWDI 66
++ WD+
Sbjct: 303 TVALWDL 309
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
+ AT S D T+ALWD RNLK ++ + + H + + +++S + +L ++G D ++ WD+
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 67 NK 68
+K
Sbjct: 352 SK 353
Score = 32.7 bits (73), Expect = 0.061, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTR--VRTLQGHSNWVKNIEFSS-KDNLLVTAGFDG 59
L +F + +DD + +WD RN T T+ H+ V + F+ + +L T D
Sbjct: 241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300
Query: 60 SIYTWDI 66
++ WD+
Sbjct: 301 TVALWDL 307
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
+ AT S D T+ALWD RNLK ++ T + H + + + +S + +L ++G D + WD+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 67 NK 68
+K
Sbjct: 350 SK 351
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTRVRT--LQGHSNWVKNIEFSS-KDNLLVTAGFDG 59
L +F + +DD + +WD R+ T + + H+ V + F+ + +L T D
Sbjct: 239 LLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 298
Query: 60 SIYTWDI 66
++ WD+
Sbjct: 299 TVALWDL 305
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
+ AT S D T+ALWD RNLK ++ T + H + + + +S + +L ++G D + WD+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 67 NK 68
+K
Sbjct: 350 SK 351
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTRVRT--LQGHSNWVKNIEFSS-KDNLLVTAGFDG 59
L +F + +DD + +WD R+ T + + H+ V + F+ + +L T D
Sbjct: 239 LLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 298
Query: 60 SIYTWDI 66
++ WD+
Sbjct: 299 TVALWDL 305
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
+ AT S D T+ALWD RNLK ++ + + H + + +++S + +L ++G D + WD+
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 67 NK 68
+K
Sbjct: 348 SK 349
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 3 FLDTRVFATCSDDTTIALWDAR--NLKTRVRTLQGHSNWVKNIEFSS-KDNLLVTAGFDG 59
L +F + +DD + +WD R N ++ H+ V + F+ + +L T D
Sbjct: 237 LLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADK 296
Query: 60 SIYTWDI 66
++ WD+
Sbjct: 297 TVALWDL 303
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ AT S+D + LWD + R T+ GH+N V + FS D LL + DG++ WD+
Sbjct: 722 LLATGSNDFFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN--LLVTAGFDGSIY 62
D ATCS D + +WD+ K V T HS V F++K N LL T D +
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 63 TWDINK 68
WD+N+
Sbjct: 734 LWDLNQ 739
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D F++ S D T +W + +L + + L+GH+ V+ FS LL T +G I W
Sbjct: 1103 DATKFSSTSADKTAKIW-SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Query: 65 DIN 67
+++
Sbjct: 1162 NVS 1164
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 18 IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
+ LW+ + + +V +GH +WV + FS + +TA D +I W+ K
Sbjct: 871 VELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Score = 30.4 bits (67), Expect = 0.30, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + + S+D+ I +W+ + LQ H VK+ +D+ L++ FDG++ W
Sbjct: 1021 DGKTLISSSEDSVIQVWNWQT--GDYVFLQAHQETVKDFRLL-QDSRLLSWSFDGTVKVW 1077
Query: 65 DI 66
++
Sbjct: 1078 NV 1079
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+C D T+ ++ A ++ ++ H + V FSS D+ + T D + W
Sbjct: 633 DGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
Query: 65 D 65
D
Sbjct: 692 D 692
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTR 29
D + A+CS D T+ LWD R+ R
Sbjct: 761 DDELLASCSADGTLRLWDVRSANER 785
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 4 LDTRVFATCSDDTTIALWDARNLK-----TRVRTLQG---HSNWVKNIEFSSKDNLLVTA 55
LD + AT D+ I +W+ + + + +G H WV ++ FS LV+A
Sbjct: 1144 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
Query: 56 GFDGSIYTWDI 66
G G + W++
Sbjct: 1204 G--GYLKWWNV 1212
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 35 GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
GH V++I+F++ L+++ D I W+
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ AT S+D + LWD + R T+ GH+N V + FS D LL + DG++ WD+
Sbjct: 715 LLATGSNDFFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN--LLVTAGFDGSIY 62
D ATCS D + +WD+ K V T HS V F++K N LL T D +
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 63 TWDINK 68
WD+N+
Sbjct: 727 LWDLNQ 732
Score = 32.7 bits (73), Expect = 0.061, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D F++ S D T +W + +L + + L+GH+ V+ FS LL T +G I W
Sbjct: 1096 DATKFSSTSADKTAKIW-SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Query: 65 DIN 67
+++
Sbjct: 1155 NVS 1157
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 18 IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
+ LW+ + + +V +GH +WV + FS + +TA D +I W+ K
Sbjct: 864 VELWNIDS-RLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + + S+D+ I +W+ + LQ H VK+ +D+ L++ FDG++ W
Sbjct: 1014 DGKTLISSSEDSVIQVWNWQT--GDYVFLQAHQETVKDFRLL-QDSRLLSWSFDGTVKVW 1070
Query: 65 DI 66
++
Sbjct: 1071 NV 1072
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+C D T+ ++ A ++ ++ H + V FSS D+ + T D + W
Sbjct: 626 DGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
Query: 65 D 65
D
Sbjct: 685 D 685
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTR 29
D + A+CS D T+ LWD R+ R
Sbjct: 754 DDELLASCSADGTLRLWDVRSANER 778
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 4 LDTRVFATCSDDTTIALWDARNLK-----TRVRTLQG---HSNWVKNIEFSSKDNLLVTA 55
LD + AT D+ I +W+ + + + +G H WV ++ FS LV+A
Sbjct: 1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Query: 56 GFDGSIYTWDI 66
G G + W++
Sbjct: 1197 G--GYLKWWNV 1205
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 35 GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
GH V++I+F++ L+++ D I W+
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
+ AT S D + LWD + R T+ GH+N V + FS D LL + DG++ WD
Sbjct: 721 LLATGSSDCFLKLWDLNQKECR-NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEF--SSKDNLLVTAGFDGSIY 62
D R ATCS D + +W++ + V T HS V F SS LL T D +
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGEL-VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLK 732
Query: 63 TWDINK 68
WD+N+
Sbjct: 733 LWDLNQ 738
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D F++ S D T +W + +L + L+GH+ V+ FS LL T +G I W
Sbjct: 1102 DATKFSSTSADKTAKIW-SFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Query: 65 DIN 67
+++
Sbjct: 1161 NVS 1163
Score = 32.3 bits (72), Expect = 0.062, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + + SDD I +W+ + K L+GH VK+ K++ L++ FDG++ W
Sbjct: 1020 DEKTLISSSDDAEIQVWNWQLDKCIF--LRGHQETVKDFRLL-KNSRLLSWSFDGTVKVW 1076
Query: 65 DI 66
+I
Sbjct: 1077 NI 1078
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 18 IALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDINK 68
+ LW+ + +++V +GH +WV + FS + +T+ D +I W+ K
Sbjct: 870 VELWNTDS-RSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK 919
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 4 LDTRVFATCSDDTTIALWDARN-------LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG 56
+D+ + AT D+ I +W+ N H WV ++ FS +L++AG
Sbjct: 1143 VDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG 1202
Query: 57 FDGSIYTWDI 66
G I W++
Sbjct: 1203 --GYIKWWNV 1210
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTR 29
D ++ A+CS D T+ LWDA + R
Sbjct: 760 DDKLLASCSADGTLKLWDATSANER 784
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+C D T+ ++ A ++ ++ H + V FS+ D + T D + W
Sbjct: 632 DGQRIASCGADKTLQVFKAET-GEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 65 D 65
+
Sbjct: 691 N 691
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
++ A+CS D TI LWD + + +RT+ GH + V ++ + +V+A D +I W++
Sbjct: 163 KLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
+C+DD T+ +WD +N K ++TL H ++V +++F +VT D ++ W+
Sbjct: 355 SCADDKTLRVWDYKN-KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
V + S+D TI +WD RTL+GH++ V++I F LL + D +I WD
Sbjct: 122 VMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 13 SDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
S D TI +WD + + TL GH NWV+ + F S +++ D ++ WD
Sbjct: 315 SRDKTIKMWDV-STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
+ S D TI +W+ + V+T GH WV+ + + L+ + D ++ W
Sbjct: 209 SASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
+ S DTTI +WD N + TLQGH+ V + S D LV+A DGSI WD N
Sbjct: 327 SASXDTTIRIWDLENGELXY-TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN 380
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ + S D T+ +WD K + L GH++ + + + + ++A D +I WD+
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKC-LYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
+ S DTTI +WD N + + TLQGH+ V + S D LV+A DGSI WD N
Sbjct: 327 SASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN 380
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ + S D T+ +WD +K + L GH++ + + + + ++A D +I WD+
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
R+ + S D TI LWD +R L+GH V+ I F +K +V+ +DG I WD+
Sbjct: 307 RLVVSGSSDNTIRLWDI-ECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDL 363
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D RV T S D+T+ +WD N + TL H V ++ F+ + ++VT D SI W
Sbjct: 182 DERVIITGSSDSTVRVWDV-NTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVW 238
Query: 65 DI 66
D+
Sbjct: 239 DM 240
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V+ + FS + +A D ++ W
Sbjct: 68 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 65 DIN 67
+ N
Sbjct: 126 NRN 128
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V+ + FS + +A D ++ W
Sbjct: 191 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
Query: 65 DIN 67
+ N
Sbjct: 249 NRN 251
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V+ + FS + +A D ++ W
Sbjct: 355 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Query: 65 DIN 67
+ N
Sbjct: 413 NRN 415
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V+ + FS + +A D ++ W
Sbjct: 478 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Query: 65 DIN 67
+ N
Sbjct: 536 NRN 538
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V+ + FS + +A D ++ W
Sbjct: 437 DDQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Query: 65 DIN 67
+ N
Sbjct: 495 NRN 497
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V + FS D + +A D ++ W
Sbjct: 396 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Query: 65 DIN 67
+ N
Sbjct: 454 NRN 456
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V + FS + +A D ++ W
Sbjct: 314 DGQTIASASDDKTVKLWN-RNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Query: 65 DIN 67
+ N
Sbjct: 372 NRN 374
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V + FS + +A D ++ W
Sbjct: 27 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84
Query: 65 DIN 67
+ N
Sbjct: 85 NRN 87
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V + FS + +A D ++ W
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Query: 65 DIN 67
+ N
Sbjct: 167 NRN 169
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V + FS + +A D ++ W
Sbjct: 150 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Query: 65 DIN 67
+ N
Sbjct: 208 NRN 210
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V + FS + +A D ++ W
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 65 DIN 67
+ N
Sbjct: 331 NRN 333
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V + F + +A D ++ W
Sbjct: 232 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 65 DIN 67
+ N
Sbjct: 290 NRN 292
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ SDD T+ LW+ RN + ++TL GHS+ V + FS + +A D ++ W
Sbjct: 519 DGQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Query: 65 D 65
+
Sbjct: 577 N 577
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 9 FATCSDDTTIALWDARNLKTR-VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
A+ S D T +W V TL+GH N VK++ ++ NLL T D S++ W+++
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Query: 68 K 68
+
Sbjct: 136 E 136
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTL--QGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
+ A+C D I +W +++ +GH V+ + +S N L +A FD + W
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89
Query: 66 INK 68
N+
Sbjct: 90 KNQ 92
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 8 VFATCSDDTTIALW--DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSI 61
+ ATCS D ++ +W D + V L H+ VK++ + LL +A +D ++
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ S D T+ +W+ N K R TL GH+ +V + S +L + G DG + WD+
Sbjct: 536 SASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 8 VFATCSDDTTIALW----DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYT 63
+ + S D +I LW D + R L GHS++V+++ SS ++ +DG +
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 64 WDI 66
WD+
Sbjct: 457 WDL 459
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 4 LDTRVFATCSDDTTIALWDARN--LKTRVRTLQGHSNWVKNIEFSSK--DNLLVTAGFDG 59
LD R + S D TI LW+ T +GH +WV + FS +V+A +D
Sbjct: 482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 60 SIYTWDIN 67
++ W+++
Sbjct: 542 TVKVWNLS 549
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 15 DTTIALWD-ARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D + LWD A + TR GH+ V ++ FS + +V+A D +I W+
Sbjct: 451 DGELRLWDLAAGVSTR--RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 5 DTRVFATCSDDTTIALW---DARNLKTRVRTLQGHSNWVKNIEFSSK-DNLLVTAGFDGS 60
+ ++ A D+ ++ L+ +A N + HS+ VK ++F++K DN+L + G +G
Sbjct: 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE 137
Query: 61 IYTWDINK 68
I+ WD+NK
Sbjct: 138 IFIWDMNK 145
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 8 VFATCSDDTTIALWDARN------LKTRVRTLQGHSNWVKNIEF-SSKDNLLVTAGFDGS 60
V A+ S+D T+ +W+ + L+ V TL+GH+ V + + + N+L++AG D
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 61 IYTWDI 66
I WD+
Sbjct: 156 ILVWDV 161
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 8 VFATCSDDTTIALWDARN------LKTRVRTLQGHSNWVKNIEF-SSKDNLLVTAGFDGS 60
V A+ S+D T+ +W+ + L+ V TL+GH+ V + + + N+L++AG D
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 61 IYTWDI 66
I WD+
Sbjct: 156 ILVWDV 161
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYT 63
L+ +F + S DTT+ LWD R VRT GH + +++F T DG+
Sbjct: 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275
Query: 64 WDI 66
+D+
Sbjct: 276 FDM 278
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 30 VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
RTLQGHS V +++++ + N +V+A DG + W+
Sbjct: 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWN 94
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 3 FLDTRVFATCSDDTTIALWDAR---NLKTRVRTLQGHSNW---VKNIEFSSKDNLLVTAG 56
F D + F T SDD T L+D R L+ R + N V ++ FS LL
Sbjct: 258 FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY 317
Query: 57 FDGSIYTWD 65
+G Y WD
Sbjct: 318 SNGDCYVWD 326
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 11 TCSDDTTIALW----DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ S D TI +W D N R L+GHS++V ++ SS ++ +DG++ WD+
Sbjct: 56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
+ +C D + +W+ N K + + GH+ ++ + S +L + G DG WD+N
Sbjct: 187 IIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
Query: 68 K 68
+
Sbjct: 246 E 246
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFS--SKDNLLVTAGFDGSIY 62
D R + S D TI LW+ + + HS WV + FS S + ++V+ G+D +
Sbjct: 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 63 TWDI 66
W++
Sbjct: 199 VWNL 202
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D T+ LWD T R GH+ V ++ FSS + +V+ D +I W+
Sbjct: 107 DGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 32 TLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDINK 68
TL+GH+ WV I + + +++++A D +I W + +
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR 70
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + AT ++D I +WD N K V LQGH + ++++ + LV+ D ++ W
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Query: 65 DI 66
D+
Sbjct: 193 DL 194
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 5 DTRVFATCSDDTTIALWDAR------NLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD 58
D + A S D + +WD+ L + + GH + V ++ F+ +V+ D
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 59 GSIYTWDIN 67
S+ W++
Sbjct: 278 RSVKLWNLQ 286
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 11 TCSDDTTIALW----DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ S D TI +W D N R L+GHS++V ++ SS ++ +DG++ WD+
Sbjct: 33 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
+ +C D + +W+ N K + + GH+ ++ + S +L + G DG WD+N
Sbjct: 164 IIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Query: 68 K 68
+
Sbjct: 223 E 223
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFS--SKDNLLVTAGFDGSIY 62
D R + S D TI LW+ + + HS WV + FS S + ++V+ G+D +
Sbjct: 116 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 63 TWDI 66
W++
Sbjct: 176 VWNL 179
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
D T+ LWD T R GH+ V ++ FSS + +V+ D +I W+
Sbjct: 84 DGTLRLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 32 TLQGHSNWVKNIEFSSK-DNLLVTAGFDGSIYTWDINK 68
TL+GH+ WV I + + +++++A D +I W + +
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTR 47
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D + A+ + D I ++D K + TL+GH+ ++++ FS LLVTA DG I +
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Query: 65 DIN 67
D+
Sbjct: 234 DVQ 236
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+++ T SDD I ++D ++ TL GH++WV N+ F D V++ D S+ W
Sbjct: 217 DSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275
Query: 65 DIN 67
D+
Sbjct: 276 DVG 278
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 13 SDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
S DT+I +WD + TL GH + +E KDN+LV+ D ++ WDI
Sbjct: 296 SLDTSIRVWDVETGNC-IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIK 347
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYT 63
D R + + D + +WD +T + TLQGH+N V +++F D + V +G D SI
Sbjct: 248 DGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRV 303
Query: 64 WDIN 67
WD+
Sbjct: 304 WDVE 307
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQG---HSNWVKNIEFSSKDNLLVTAGFDGS 60
L + + + D+T+ +WD + + ++TLQG H + V ++F+ N ++T+ DG+
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGT 383
Query: 61 IYTWDIN 67
+ WD+
Sbjct: 384 VKLWDLK 390
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D T SDD TI +WD + K+ V TL+GH + V F ++++ DG++ W
Sbjct: 197 DKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 65 D 65
+
Sbjct: 256 N 256
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTWDINK 68
+ SDD T+ LW+ N +T +GH ++V + F+ KD +G D ++ W + +
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D T SDD TI +WD + K+ V TL+GH + V F ++++ DG++ W
Sbjct: 197 DKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 65 D 65
+
Sbjct: 256 N 256
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTWDINK 68
+ SDD T+ LW+ N +T +GH ++V + F+ KD +G D ++ W + +
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D T SDD TI +WD + K+ V TL+GH + V F ++++ DG++ W
Sbjct: 197 DKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 65 D 65
+
Sbjct: 256 N 256
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 13 SDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTWDINK 68
SDD T+ LW+ N +T +GH ++V + F+ KD +G D ++ W + +
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D T SDD TI +WD + K+ V TL+GH + V F ++++ DG++ W
Sbjct: 197 DKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 65 D 65
+
Sbjct: 256 N 256
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 13 SDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAG-FDGSIYTWDINK 68
SDD T+ LW+ N +T +GH ++V + F+ KD +G D ++ W + +
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
+CS D++ ++W + N R+ TL GH+ + +I+ VT D SI WD++
Sbjct: 49 SCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.9 bits (76), Expect = 0.027, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 4 LDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYT 63
LD V + D + +WD + V L+GH+N+V ++ S +L ++ DG
Sbjct: 164 LDAPVIVSGGWDNLVKVWDLATGRL-VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Query: 64 WDINK 68
WD+ K
Sbjct: 223 WDLTK 227
Score = 32.0 bits (71), Expect = 0.091, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 31 RTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
R L+GHS +V ++ S+ N V+A +D S+ W++
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL 96
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDN--LLVTAGFDGSIY 62
D R + D + +W+ + + H++WV + FS + ++V+ G+D +
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 63 TWDI 66
WD+
Sbjct: 180 VWDL 183
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ S D ++ LW+ +N + + + L GH+ V ++ FS + +V+ G D ++ W++
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV 138
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTR---VRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSI 61
D ATCS D ++ +W+ + LQ HS VK++ + + LL ++ +D ++
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTV 177
Query: 62 YTW 64
W
Sbjct: 178 RIW 180
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 6 TRVFATCSDDTTIALWDARNLKTR------VRTLQGHSNWVKNIEFSSKDNLLVTAGFDG 59
T + A S D+T+++W R + ++GH N VK + +S+ L T D
Sbjct: 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK 129
Query: 60 SIYTWDINK 68
S++ W+ ++
Sbjct: 130 SVWIWETDE 138
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 9 FATCSD-DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
FA S D T+ LWD R T R + GH + V ++ FS + +++AG + I W+I
Sbjct: 90 FAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 5 DTRVFATCSDDTTIALW----DARN--LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD 58
D+ V + S D T+ +W + +N + L GH+++V ++ S ++ +++ +D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 59 GSIYTWDI 66
++ WD+
Sbjct: 98 KTLRLWDL 105
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 9 FATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
FA+ D + +W+ N + R T + H + V ++ S + T G D + WDI
Sbjct: 187 FASVGWDGRLKVWNT-NFQIRY-TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 33 LQGHSNWVKNI--EFSSKDN----LLVTAGFDGSIYTWDI 66
L+GHS+WV +I FS K+N +L++ D ++ W +
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL 56
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.1 bits (74), Expect = 0.043, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEF-SSKDNLLVTAGFDGSIYTWD 65
V AT D +++WD R V L+ H + + F S L T DGS++ WD
Sbjct: 251 VVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
FLD T S DTT ALWD + H+ V ++ + L V+ D S
Sbjct: 162 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 63 TWDINK 68
WD+ +
Sbjct: 221 LWDVRE 226
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 25 NLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
++TR RTL+GH + + + + LLV+A DG + WD
Sbjct: 55 QMRTR-RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 94
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG--SIY 62
D+R+ + S D + +WD+ +V + S+WV ++ N + G D SIY
Sbjct: 77 DSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 135
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
FLD T S DTT ALWD + H+ V ++ + L V+ D S
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 63 TWDINK 68
WD+ +
Sbjct: 210 LWDVRE 215
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 25 NLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
++TR RTL+GH + + + + LLV+A DG + WD
Sbjct: 44 QMRTR-RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG--SIY 62
D+R+ + S D + +WD+ +V + S+WV ++ N + G D SIY
Sbjct: 66 DSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
FLD T S DTT ALWD + H+ V ++ + L V+ D S
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 63 TWDINK 68
WD+ +
Sbjct: 210 LWDVRE 215
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG--SIY 62
D+R+ + S D + +WD+ +V + S+WV ++ N + G D SIY
Sbjct: 66 DSRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 25 NLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
++TR RTL+GH + + + + LL++A DG + WD
Sbjct: 44 QMRTR-RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD 83
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
FLD T S DTT ALWD + H+ V ++ + L V+ D S
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 63 TWDINK 68
WD+ +
Sbjct: 210 LWDVRE 215
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 25 NLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
++TR RTL+GH + + + + LLV+A DG + WD
Sbjct: 44 QMRTR-RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG--SIY 62
D+R+ + S D + +WD+ +V + S+WV ++ N + G D SIY
Sbjct: 66 DSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
FLD T S DTT ALWD + H+ V ++ + L V+ D S
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 63 TWDINK 68
WD+ +
Sbjct: 210 LWDVRE 215
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDG--SIY 62
D+R+ + S D + +WD+ +V + S+WV ++ N + G D SIY
Sbjct: 66 DSRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 25 NLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
++TR RTL+GH + + + + LL++A DG + WD
Sbjct: 44 QMRTR-RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD 83
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 35 GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
HS+WV ++ F+ L +AG+DG + WD+
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 35 GHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
HS+WV ++ F+ L +AG+DG + WD+
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 24 RNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDIN 67
N+ + +++ H+N++ F++ D ++TA DG+ WD+
Sbjct: 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE 184
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 26 LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
+KTR RTL+GH N V +++ +V++ DG + WD
Sbjct: 54 MKTR-RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 7 RVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
V ++ S I D R ++ TLQGHS+ V + + S L + G D + WD
Sbjct: 187 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND
INHIBITOR Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND
INHIBITOR Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two
Binding Sites For Nucleation Promoting Factor Wasp-Vca
On Arp23 COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With
Bound Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYT 63
D A C ++ + +++ K +V L+ H+ V I+++ N +VT G D + Y
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYV 78
Query: 64 WDI 66
W +
Sbjct: 79 WTL 81
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s
Subunit Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s
Subunit Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 32 TLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
TL+GH+ WV ++ S+ + NLL++A D ++ +W +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 11 TCSDDTTIALW----DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ S D T+ W D + VR+ +GHS+ V++ ++ ++A +D ++ WD+
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNI-----EFSSKDNL-LVTAGFDGSIYTW 64
+ S D TI +W + + TL GH++WV + E + D++ +++AG D + W
Sbjct: 124 SGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 65 DINK 68
++N+
Sbjct: 182 NLNQ 185
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
D T+ LWD +T R + GH + V +++ K +++++ D +I W I
Sbjct: 86 DKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + +D + W+ + + GH++ + + S L+ +AG DG I W
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 65 DI 66
++
Sbjct: 224 NL 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 32 TLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
TL+GH+ WV ++ S+ + NLL++A D ++ +W +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 11 TCSDDTTIALW----DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ S D T+ W D + VR+ +GHS+ V++ ++ ++A +D ++ WD+
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNI-----EFSSKDNL-LVTAGFDGSIYTW 64
+ S D TI +W + + TL GH++WV + E + D++ +++AG D + W
Sbjct: 124 SGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 65 DINK 68
++N+
Sbjct: 182 NLNQ 185
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
D T+ LWD +T R + GH + V +++ K +++++ D +I W I
Sbjct: 86 DKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + +D + W+ + + GH++ + + S L+ +AG DG I W
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 65 DI 66
++
Sbjct: 224 NL 225
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 32 TLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
TL+GH+ WV ++ S+ + NLL++A D ++ +W +
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 41
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 11 TCSDDTTIALW----DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ S D T+ W D + VR+ +GHS+ V++ ++ ++A +D ++ WD+
Sbjct: 29 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 88
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNI-----EFSSKDNL-LVTAGFDGSIYTW 64
+ S D TI +W + + TL GH++WV + E + D++ +++AG D + W
Sbjct: 118 SGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 175
Query: 65 DINK 68
++N+
Sbjct: 176 NLNQ 179
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
D T+ LWD +T R + GH + V +++ K +++++ D +I W I
Sbjct: 80 DKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 130
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + +D + W+ + + GH++ + + S L+ +AG DG I W
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 65 DI 66
++
Sbjct: 218 NL 219
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P21
Length = 319
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 32 TLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
TL+GH+ WV ++ S+ + NLL++A D ++ +W +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 11 TCSDDTTIALW----DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ S D T+ W D + VR+ +GHS+ V++ ++ ++A +D ++ WD+
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNI-----EFSSKDNL-LVTAGFDGSIYTW 64
+ S D TI +W + + TL GH++WV + E + D++ +++AG D + W
Sbjct: 124 SGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 65 DINK 68
++N+
Sbjct: 182 NLNQ 185
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
D T+ LWD +T R + GH + V +++ K +++++ D +I W I
Sbjct: 86 DKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + +D + W+ + + GH++ + + S L+ +AG DG I W
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 65 DI 66
++
Sbjct: 224 NL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space
Group P63
Length = 319
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 32 TLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
TL+GH+ WV ++ S+ + NLL++A D ++ +W +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 11 TCSDDTTIALW----DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ S D T+ W D + VR+ +GHS+ V++ ++ ++A +D ++ WD+
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNI-----EFSSKDNL-LVTAGFDGSIYTW 64
+ S D TI +W + + TL GH++WV + E + D++ +++AG D + W
Sbjct: 124 SGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 65 DINK 68
++N+
Sbjct: 182 NLNQ 185
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
D T+ LWD +T R + GH + V +++ K +++++ D +I W I
Sbjct: 86 DKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + +D + W+ + + GH++ + + S L+ +AG DG I W
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 65 DI 66
++
Sbjct: 224 NL 225
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
F + S D + +W ++ + RTL GH V +I + +++A DG+I
Sbjct: 145 FPSGEALISSSQDMQLKIWSVKD-GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 203
Query: 63 TWD 65
W+
Sbjct: 204 LWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
F + S D + +W ++ + RTL GH V +I + +++A DG+I
Sbjct: 148 FPSGEALISSSQDMQLKIWSVKD-GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206
Query: 63 TWD 65
W+
Sbjct: 207 LWE 209
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1,
Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1,
Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1,
Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 32 TLQGHSNWVKNIEFSS-KDNLLVTAGFDGSIYTWDI 66
TL+GH+ WV ++ S+ + NLL++A D ++ +W +
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 11 TCSDDTTIALW----DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
+ S D T+ W D + VR+ +GHS+ V++ ++ ++A +D ++ WD+
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 11 TCSDDTTIALWDARNLKTRVRTLQGHSNWVKNI-----EFSSKDNL-LVTAGFDGSIYTW 64
+ S D TI +W + + TL GH++WV + E + D++ +++AG D + W
Sbjct: 124 SGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 65 DINK 68
++N+
Sbjct: 182 NLNQ 185
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 15 DTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWDI 66
D T+ LWD +T R + GH + V +++ K + +++ D +I W I
Sbjct: 86 DKTLRLWDVATGETYQRFV-GHKSDVXSVDIDKKASXIISGSRDKTIKVWTI 136
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
D+ + +D + W+ + + GH++ + + S L+ +AG DG I W
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Query: 65 DI 66
++
Sbjct: 224 NL 225
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 5 DTRVFATCSDDTTIALWDAR-NLKTRV--RTLQGHSNWVKNIEFS 46
++R F T D + +W + +T V TL+GHS+WV+++ +S
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp And Crosslinked With
Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Atp And Crosslinked With
Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
CO-Crystallized With Amp-Pnp And Calcium
Length = 372
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 5 DTRVFATCSDDTTIALWDARNLK-TRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYT 63
D A C ++ + +++ K +V L+ H+ V ++++ N +VT G D + Y
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78
Query: 64 WDI 66
W +
Sbjct: 79 WTL 81
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 40 VKNIEFSSKDNLLVTAGFDGSIYTWDI 66
V +IEFS + L TAG DG I W++
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNL 280
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 40 VKNIEFSSKDNLLVTAGFDGSIYTWDI 66
V +IEFS + L TAG DG I W++
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNL 280
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 40 VKNIEFSSKDNLLVTAGFDGSIYTWDI 66
V +IEFS + L TAG DG I W++
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNL 280
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 40 VKNIEFSSKDNLLVTAGFDGSIYTWDI 66
V +IEFS + L TAG DG I W++
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNL 280
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 2 IFLDTRVFATCSDDTTIALWDARNLKTRVRTLQGHSNWVKNIEF-SSKDNLLVTAGFDGS 60
+F D + D ++ +WD K +++ HS+ V + KD + ++ G DG
Sbjct: 147 VFSDGTQAVSGGKDFSVKVWDLSQ-KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205
Query: 61 IYTWDINK 68
I WD K
Sbjct: 206 ILLWDTRK 213
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 8 VFATCSDDTTIALWDARNLKTRVR 31
+F +C +D I LWD R K R
Sbjct: 196 IFLSCGEDGRILLWDTRKPKPATR 219
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 5 DTRVFATCSDDTTIALWDAR-NLKTRV--RTLQGHSNWVKNIEFS 46
++R F T D + +W + +T V TL+GHS+WV+++ +S
Sbjct: 171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 215
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 33 LQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTWD 65
L GH ++V +I KD LL++AG D I+ WD
Sbjct: 237 LFGHKHFVSSI-CCGKDYLLLSAGGDDKIFAWD 268
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 5 DTRVFATCSDDTTIALWDAR-NLKTRV--RTLQGHSNWVKNIEFS 46
++R F T D + +W + +T V TL+GHS+WV+++ +S
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 5 DTRVFATCSDDTTIALWDAR-NLKTRV--RTLQGHSNWVKNIEFS 46
++R F T D + +W + +T V TL+GHS+WV+++ +S
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 1 MIFLDTRVFATCSDDTTIALWDARN-LKTRVRTLQGHSNWVKNIEFSSK--DNLLVTAGF 57
M + TR+ ATCS D ++ ++D RN + + L+GH V + ++ N+L + +
Sbjct: 21 MDYYGTRL-ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY 79
Query: 58 DGSIYTW 64
D + W
Sbjct: 80 DRKVIIW 86
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 2 IFLDTRVFATCSDDTTIALW---DARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFD 58
I L T A+CS D + +W DA + + L ++ V ++ +S N+L +G D
Sbjct: 224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD 283
Query: 59 GSIYTW 64
+ W
Sbjct: 284 NKVTLW 289
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 5 DTRVFATCSDDTTIALWDAR-NLKTRV--RTLQGHSNWVKNIEFS 46
++R F T D + +W + +T V TL+GHS+WV+++ +S
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 8 VFATCSDDTTIALWDAR 24
VF +CS+D I LWD R
Sbjct: 184 VFLSCSEDNRILLWDTR 200
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 27 KTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIYTW 64
KT L GH + +EF+ + LL++A DG++ W
Sbjct: 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|4FXQ|A Chain A, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4FXQ|B Chain B, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4GF1|A Chain A, Crystal Structure Of Certhrax
pdb|4GF1|B Chain B, Crystal Structure Of Certhrax
Length = 460
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 1 MIFLDTRVFATCSDDTTIALWDARNLKTRVRT-----LQGHSNWVKNIEFSSKDNLLVTA 55
M+ LD F SDD + + K R +Q NW +N+ S KD +
Sbjct: 204 MLELDQMRFKEISDDVKEKNKNVLDFKWYTRKAESWGVQTFKNWKENLTISEKD---IIT 260
Query: 56 GFDGSIY 62
G+ GS Y
Sbjct: 261 GYTGSKY 267
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 8 VFATCSDDTTIALWDARNLKTRVRTLQ---------------GHSNWVKNIEFSSKDNLL 52
+ AT S D+ + LWD R + TL H+ V + F+S L
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 53 VTAGFDGSIYTWD 65
+T G D + W+
Sbjct: 261 LTVGTDNRMRLWN 273
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 8 VFATCSDDTTIALWDARNLKTR 29
+ AT S D T+ LWD RN+K +
Sbjct: 219 LMATSSVDATVKLWDLRNIKDK 240
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 8 VFATCSDDTTIALWDARNLKTR 29
+ AT S D T+ LWD RN+K +
Sbjct: 218 LMATSSVDATVKLWDLRNIKDK 239
>pdb|4FK1|A Chain A, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|B Chain B, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|C Chain C, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
pdb|4FK1|D Chain D, Crystal Structure Of Putative Thioredoxin Reductase Trxb
From Bacillus Anthracis
Length = 304
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 30 VRTLQGHSNWVKNIEFSSKDNLLVTAGF 57
+RTLQG ++K +EF S + GF
Sbjct: 202 IRTLQGEGGYLKKVEFHSGLRIERAGGF 229
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 FLDTRVFATCSDDTTIALWDARNLK 27
+LD++ FAT D TI +WD K
Sbjct: 261 WLDSQKFATVGADATIRVWDVTTSK 285
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 20 LWDARNLKTRVRTLQGHSNWVKNIEFSSKDNLLVTA 55
+WDA R ++ W+KNI ++ + + +TA
Sbjct: 197 VWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITA 232
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 5 DTRVFATCSDDTTIALWDARN--LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
D + + S D + LW+ + L ++GH + V + ++ +++ G D S+
Sbjct: 122 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 181
Query: 63 TWDIN 67
W IN
Sbjct: 182 LWRIN 186
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 5 DTRVFATCSDDTTIALWDARN--LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
D + + S D + LW+ + L ++GH + V + ++ +++ G D S+
Sbjct: 126 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 185
Query: 63 TWDIN 67
W IN
Sbjct: 186 LWRIN 190
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 5 DTRVFATCSDDTTIALWDARN--LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
D + + S D + LW+ + L ++GH + V + ++ +++ G D S+
Sbjct: 127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 186
Query: 63 TWDIN 67
W IN
Sbjct: 187 LWRIN 191
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 5 DTRVFATCSDDTTIALWDARN--LKTRVRTLQGHSNWVKNIEFSSKDNLLVTAGFDGSIY 62
D + + S D + LW+ + L ++GH + V + ++ +++ G D S+
Sbjct: 126 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 185
Query: 63 TWDIN 67
W IN
Sbjct: 186 LWRIN 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,971,060
Number of Sequences: 62578
Number of extensions: 54240
Number of successful extensions: 580
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 329
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)