BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1188
(230 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/164 (68%), Positives = 127/164 (77%), Gaps = 15/164 (9%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD ETMSKVKVLYVRNLTQ C+EEKLKE+FE YG+++RVK+IKDYA
Sbjct: 330 GCDIIVDWADPQEEPDAETMSKVKVLYVRNLTQDCSEEKLKESFEVYGKIDRVKKIKDYA 389
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR AI A+NELNG+ +AG+ +EVSLAKPPSDKKKKEE+LR RERRMMQMMQGRG
Sbjct: 390 FIHFEDRDNAIKALNELNGKDLAGACIEVSLAKPPSDKKKKEEVLRARERRMMQMMQGRG 449
Query: 193 GPGPSGAHAPLLTGPPM---------PRGSVPLQAALSSTRMGR 227
G PS P + G PM PRGS L MGR
Sbjct: 450 GSSPS---HPAMMGSPMASLRGPGAGPRGSA---GGLRCAAMGR 487
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 5 ASIKNQKPIVIFVNVRKFTMAESSRE--AEEKPSSERTPDYTKLLEYGLDKRIAGKLDDI 62
+SI IVI V+ MAE + E +E+ ERT DY KL++YGLD ++A KLD+I
Sbjct: 3 SSILCVGSIVIAVH----EMAEGNGELSIKEEHDLERTLDYHKLIDYGLDAKVATKLDEI 58
Query: 63 FKTGK 67
++TGK
Sbjct: 59 YQTGK 63
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/138 (76%), Positives = 120/138 (86%), Gaps = 3/138 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKV+VLYVRNLTQ C+EEKLKE+FEQYG++ERVK+IKDYA
Sbjct: 360 GCDIIVDWADPQEEPDEQTMSKVRVLYVRNLTQDCSEEKLKESFEQYGKIERVKKIKDYA 419
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AMNELNG+ + GS +EVSLAKPPSDKKKKEE+LR RERRMMQM+QGRG
Sbjct: 420 FIHFEDRDNAVKAMNELNGKEMGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMLQGRG 479
Query: 193 GPGPSGAHAPLLTGPPMP 210
G PS P + G PMP
Sbjct: 480 GGSPS---HPSMMGGPMP 494
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 30 EAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
E +E + ERT D+ KL++YGLD+++A KLD+I+KTGK
Sbjct: 12 EKQEIENVERTEDFNKLMQYGLDEKVAAKLDEIYKTGK 49
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/138 (76%), Positives = 120/138 (86%), Gaps = 3/138 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKV+VLYVRNLTQ C+EEKLKE+FEQYG++ERVK+IKDYA
Sbjct: 307 GCDIIVDWADPQEEPDEQTMSKVRVLYVRNLTQDCSEEKLKESFEQYGKIERVKKIKDYA 366
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AMNELNG+ + GS +EVSLAKPPSDKKKKEE+LR RERRMMQM+QGRG
Sbjct: 367 FIHFEDRDNAVRAMNELNGKEMGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMLQGRG 426
Query: 193 GPGPSGAHAPLLTGPPMP 210
G PS P + G PMP
Sbjct: 427 GGSPS---HPSMMGGPMP 441
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 26 ESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
E + EE ERT D+ KL++YGLD+++A KLD+I+KTGK
Sbjct: 2 EEKQSKEEMEYVERTEDFNKLMQYGLDEKVAAKLDEIYKTGK 43
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/164 (69%), Positives = 129/164 (78%), Gaps = 11/164 (6%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKV+VLYV+NLTQ C+EEKLKE+FEQYG +ERVK+IKDYA
Sbjct: 316 GCDIIVDWADPQEEPDEQTMSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERVKKIKDYA 375
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
FVHFE+R A+ AMNELNG+ + GS +EVSLAKPPSDKKKKEE+LR RERRMMQM QGR
Sbjct: 376 FVHFEERDNAVKAMNELNGKEIGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMFQGRS 435
Query: 193 GPGPSGAHAPLLTGPPMP-RGSVPLQ-----AALSSTRMGRGDY 230
G PS P + G PMP RG P Q A +MGRGDY
Sbjct: 436 GGSPS---HPSMMGGPMPVRG--PGQGPRGTGAGMRGQMGRGDY 474
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 26 ESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
E + EE ERT D++KL++YGLD+++A KLD+I+KTGK
Sbjct: 11 EEKQSKEEMEYVERTEDFSKLIQYGLDEKVAAKLDEIYKTGK 52
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/164 (69%), Positives = 129/164 (78%), Gaps = 11/164 (6%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKV+VLYV+NLTQ C+EEKLKE+FEQYG +ERVK+IKDYA
Sbjct: 316 GCDIIVDWADPQEEPDEQTMSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERVKKIKDYA 375
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
FVHFE+R A+ AMNELNG+ + GS +EVSLAKPPSDKKKKEE+LR RERRMMQM QGR
Sbjct: 376 FVHFEERDNAVKAMNELNGKEIGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMFQGRS 435
Query: 193 GPGPSGAHAPLLTGPPMP-RGSVPLQ-----AALSSTRMGRGDY 230
G PS P + G PMP RG P Q A +MGRGDY
Sbjct: 436 GGSPS---HPSMMGGPMPVRG--PGQGPRGTGAGMRGQMGRGDY 474
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 26 ESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
E + EE ERT D++KL++YGLD+++A KLD+I+KTGK
Sbjct: 11 EEKQSKEEMEYVERTEDFSKLIQYGLDEKVAAKLDEIYKTGK 52
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/164 (69%), Positives = 129/164 (78%), Gaps = 11/164 (6%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKV+VLYV+NLTQ C+EEKLKE+FEQYG +ERVK+IKDYA
Sbjct: 316 GCDIIVDWADPQEEPDEQTMSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERVKKIKDYA 375
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
FVHFE+R A+ AMNELNG+ + GS +EVSLAKPPSDKKKKEE+LR RERRMMQM QGR
Sbjct: 376 FVHFEERDNAVKAMNELNGKEIGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMFQGRS 435
Query: 193 GPGPSGAHAPLLTGPPMP-RGSVPLQ-----AALSSTRMGRGDY 230
G PS P + G PMP RG P Q A +MGRGDY
Sbjct: 436 GGSPS---HPSMMGGPMPVRG--PGQGPRGTGAGMRGQMGRGDY 474
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 26 ESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
E + EE ERT D++KL++YGLD+++A KLD+I+KTGK
Sbjct: 11 EEKQSKEEMEYVERTEDFSKLIQYGLDEKVAAKLDEIYKTGK 52
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/140 (75%), Positives = 123/140 (87%), Gaps = 2/140 (1%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKV+VLYVRNLTQ C+EEKLKE+FEQYG++ERVK+IKDYA
Sbjct: 313 GCDIIVDWADPQEEPDEQTMSKVRVLYVRNLTQDCSEEKLKESFEQYGKIERVKKIKDYA 372
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AMNELNG+ + GS +EVSLAKPPSDKKKKEE+LR RERRMMQM+QGRG
Sbjct: 373 FIHFEDRDNAVKAMNELNGKEMGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMLQGRG 432
Query: 193 G-PGPSGAHA-PLLTGPPMP 210
G P SG+ + P + G PMP
Sbjct: 433 GFPFDSGSPSHPSMMGGPMP 452
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 30 EAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
E +E + ERT D+ KL++YGLD+++A KLD+I+KTGK
Sbjct: 12 EKQEMENLERTEDFNKLMQYGLDEKVAAKLDEIYKTGK 49
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/164 (68%), Positives = 127/164 (77%), Gaps = 11/164 (6%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKV+VLYV+NLTQ C+EEKLKE FEQYG +ERVK+IKDYA
Sbjct: 316 GCDIIVDWADPQEEPDEQTMSKVRVLYVKNLTQDCSEEKLKEVFEQYGNIERVKKIKDYA 375
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
FVHFE+R A+ AMNELNG+ + GS +EVSLAKPPSDKKKKEE+LR RERRM QM QGR
Sbjct: 376 FVHFEERDNAVKAMNELNGKEIGGSHIEVSLAKPPSDKKKKEEMLRARERRMFQMFQGRS 435
Query: 193 GPGPSGAHAPLLTGPPMP-RGSVPLQ-----AALSSTRMGRGDY 230
G PS P + G PMP RG P Q A +MGRGDY
Sbjct: 436 GGSPS---HPSMMGGPMPIRG--PGQGPRGTGAGMRGQMGRGDY 474
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 26 ESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
E + EE +ERT D+ KL++YGLD+++A KLD+I+KTGK
Sbjct: 11 EEKQSKEEMEYTERTEDFAKLIQYGLDEKVAAKLDEIYKTGK 52
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/151 (70%), Positives = 120/151 (79%), Gaps = 3/151 (1%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ TE+KLKE FEQYG+VERVK+IKDYA
Sbjct: 320 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERVKKIKDYA 379
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ V S +EVSLAKPPSDKKKKEEILR RERRMMQMMQGR
Sbjct: 380 FIHFEDRDSAVEAMRGLNGKEVGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQGRP 439
Query: 193 GPGP-SGAHAPLLTGPPM--PRGSVPLQAAL 220
G G S H +++ PM P +PL+ +
Sbjct: 440 GIGNLSPTHPSMMSITPMRIPGARMPLRTPM 470
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 24 MAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ + +++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 9 LDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 115/136 (84%), Gaps = 3/136 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +EEKLKEAFE YG+VERVK+IKDYA
Sbjct: 330 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQEISEEKLKEAFEAYGKVERVKKIKDYA 389
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR+ A+ AM EL+G+ + GS +EVSLAKPPSDKKKKEEILR RERRMMQMMQ RG
Sbjct: 390 FIHFEDRENAVKAMEELDGKEMGGSNIEVSLAKPPSDKKKKEEILRARERRMMQMMQVRG 449
Query: 193 GPGPSGAHAPLLTGPP 208
G P A L GPP
Sbjct: 450 GMMPG---AMPLRGPP 462
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 5/50 (10%)
Query: 23 TMAESSREAEEKP-----SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
MAE + E E+P ERT DY KL+EYGLD+++A KLD+I+KTGK
Sbjct: 13 AMAEGNGELSEEPMKIEGEPERTEDYQKLIEYGLDEKVAAKLDEIYKTGK 62
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 104/136 (76%), Positives = 115/136 (84%), Gaps = 3/136 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +EEKLKEAFE YG+VERVK+IKDYA
Sbjct: 333 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQEISEEKLKEAFEAYGKVERVKKIKDYA 392
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR+ A+ AM EL+G+ + GS +EVSLAKPPSDKKKKEEILR RERRMMQMMQ RG
Sbjct: 393 FIHFEDRENAVKAMEELDGKEMGGSNIEVSLAKPPSDKKKKEEILRARERRMMQMMQVRG 452
Query: 193 GPGPSGAHAPLLTGPP 208
G P A L GPP
Sbjct: 453 GMMPG---AMPLRGPP 465
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 5/50 (10%)
Query: 23 TMAESSREAEEKP-----SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
MAE + E E+P ERT DY KL+EYGLD+++A KLD+I+KTGK
Sbjct: 13 AMAEGNGELSEEPMKIEGEPERTEDYQKLIEYGLDEKVAAKLDEIYKTGK 62
>gi|197260810|gb|ACH56905.1| heterogeneous nuclear ribonucleoprotein r [Simulium vittatum]
Length = 252
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/166 (65%), Positives = 122/166 (73%), Gaps = 12/166 (7%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD TMSKVKVLYVRNLT +EEKLKE FE YGRVERVK+IKDYA
Sbjct: 32 GCDIIVDWADPQEEPDEGTMSKVKVLYVRNLTHDISEEKLKEHFENYGRVERVKKIKDYA 91
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
FVH+EDR + AM +L+G+ + GS +EVSLAKPPSDKKKKEEILR RERRM+QMMQGR
Sbjct: 92 FVHYEDRDNTVLAMRDLDGKDIGGSCIEVSLAKPPSDKKKKEEILRARERRMLQMMQGRT 151
Query: 193 G-PGPSGAHAPLLTGPPMPRGSVPLQAALSSTR-------MGRGDY 230
G G P + P MP P++ +S R MGRGDY
Sbjct: 152 GIVGSLSPSHPSMIPPGMP----PMRNVVSGPRIPLRGGPMGRGDY 193
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 120/154 (77%), Gaps = 8/154 (5%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 320 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 379
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 380 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQTR- 438
Query: 193 GPGPSG----AHAPLLTGPPM--PRGSVPLQAAL 220
PG G H +++ PPM P +PL+ +
Sbjct: 439 -PGLVGNLSPTHPSMMSMPPMRLPSARMPLRTPM 471
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 13 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/154 (68%), Positives = 119/154 (77%), Gaps = 8/154 (5%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ TEEKLKE FEQYG+VERVK+IKDYA
Sbjct: 320 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEEKLKEQFEQYGKVERVKKIKDYA 379
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 380 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 438
Query: 193 GPGPSG----AHAPLLTGPPM--PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 439 -PGLVGNLSPTHPSMMSLTPMRLPGARMPLRTPI 471
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 13 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 105/154 (68%), Positives = 119/154 (77%), Gaps = 8/154 (5%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ TEEKLKE FEQYG+VERVK+IKDYA
Sbjct: 320 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEEKLKEQFEQYGKVERVKKIKDYA 379
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 380 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 438
Query: 193 GPGPSG----AHAPLLTGPPM--PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 439 -PGLVGNLSPTHPSMMSLTPMRLPGARMPLRTPI 471
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 24 MAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ + +++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 9 LDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 112/137 (81%), Gaps = 4/137 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ TE+KLKE FEQYG+VERVK+IKDYA
Sbjct: 320 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERVKKIKDYA 379
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ V S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 380 FIHFEDRDSAVEAMRGLNGKEVGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 438
Query: 193 GPGPSGAHAPLLTGPPM 209
PG G +P T P M
Sbjct: 439 -PGIVGNLSP--THPSM 452
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 13 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/147 (70%), Positives = 115/147 (78%), Gaps = 10/147 (6%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 359 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 418
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 419 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARP 478
Query: 193 G--------PGPSGAHAPLLTGPPMPR 211
G P GA PL T P+PR
Sbjct: 479 GIVGXXSLTPMRPGARMPLRT--PIPR 503
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 55 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 94
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/137 (75%), Positives = 112/137 (81%), Gaps = 4/137 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ TE+KLKE FEQYG+VERVK+IKDYA
Sbjct: 376 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVTEDKLKEQFEQYGKVERVKKIKDYA 435
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ V S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 436 FIHFEDRDSAVEAMRGLNGKEVGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 494
Query: 193 GPGPSGAHAPLLTGPPM 209
PG G +P T P M
Sbjct: 495 -PGIVGNLSP--THPSM 508
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 69 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 108
>gi|195569361|ref|XP_002102678.1| GD19374 [Drosophila simulans]
gi|194198605|gb|EDX12181.1| GD19374 [Drosophila simulans]
Length = 350
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 97 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 156
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 157 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 215
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 216 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 247
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/170 (62%), Positives = 120/170 (70%), Gaps = 14/170 (8%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 322 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 381
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 382 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 440
Query: 193 GPGPSGAHAPL-----------LTGPPMP-RGSVPLQAALSSTRMGRGDY 230
PG G +P L G MP R +P + G DY
Sbjct: 441 -PGIVGNLSPTHPSMMSLTPMRLQGARMPLRTPIPREYDYYYDYFGFSDY 489
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 8/57 (14%)
Query: 19 VRKFTMAESSRE--------AEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ KF MAE + E A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 1 MNKFEMAEGNGELLDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 57
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 359 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 418
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 419 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 477
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 478 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 509
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 55 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 94
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 317 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 376
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 377 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 435
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 436 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 467
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 13 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 359 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 418
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 419 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 477
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 478 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 509
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 55 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 94
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 351 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 410
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 411 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 469
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 470 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 501
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 47 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 86
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 322 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 381
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 382 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 440
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 441 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 472
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 8/57 (14%)
Query: 19 VRKFTMAESSRE--------AEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ KF MAE + E A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 1 MNKFEMAEGNGELLDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 57
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 278 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 337
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 338 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 396
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 397 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 428
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 317 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 376
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 377 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 435
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 436 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 467
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 24 MAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ + +++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 9 LDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 317 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 376
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 377 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 435
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 436 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 467
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 24 MAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ + +++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 9 LDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 317 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 376
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 377 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 435
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 436 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 467
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 24 MAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ + +++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 9 LDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 359 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 418
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 419 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 477
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 478 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 509
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 55 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 94
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 351 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 410
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 411 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 469
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 470 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 501
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 47 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 86
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 317 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 376
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 377 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 435
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 436 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 467
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 24 MAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ + +++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 9 LDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 119/153 (77%), Gaps = 7/153 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 351 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 410
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 411 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 469
Query: 193 GPGPSG----AHAPLLTGPPM-PRGSVPLQAAL 220
PG G H +++ PM P +PL+ +
Sbjct: 470 -PGIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 501
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 24 MAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ + +++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 43 LDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 86
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/137 (73%), Positives = 112/137 (81%), Gaps = 4/137 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 355 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 414
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 415 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQTR- 473
Query: 193 GPGPSGAHAPLLTGPPM 209
PG G +P T P M
Sbjct: 474 -PGIVGNLSP--THPSM 487
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 51 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 90
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/137 (73%), Positives = 112/137 (81%), Gaps = 4/137 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 320 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEHFEQYGKVERVKKIKDYA 379
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 380 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR- 438
Query: 193 GPGPSGAHAPLLTGPPM 209
PG G +P T P M
Sbjct: 439 -PGIVGNLSP--THPSM 452
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 13 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/146 (69%), Positives = 115/146 (78%), Gaps = 10/146 (6%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
CDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +EEKLKE+FEQ+GRVERVK+IKDYAF
Sbjct: 322 CDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFEQFGRVERVKKIKDYAF 381
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGG 193
VHFEDR A+ AM +L+G+ V GS +EVSLAKPPSDKKKKEEILR RERRM Q +Q R G
Sbjct: 382 VHFEDRDNAVKAMKDLDGKEVGGSNIEVSLAKPPSDKKKKEEILRARERRMTQFLQTRIG 441
Query: 194 --------PGPSGAHAPLLTG--PPM 209
P S HA ++ G PPM
Sbjct: 442 LVNTVPSFPSMSPQHAGMMPGAMPPM 467
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 33/41 (80%)
Query: 27 SSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++++ E ERT DY+KLLEYGL K +AG+LDDI+KTGK
Sbjct: 13 ANQKSGEGGDGERTQDYSKLLEYGLHKMVAGRLDDIYKTGK 53
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/146 (69%), Positives = 115/146 (78%), Gaps = 10/146 (6%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
CDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +EEKLKE+FEQ+GRVERVK+IKDYAF
Sbjct: 322 CDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFEQFGRVERVKKIKDYAF 381
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGG 193
VHFEDR A+ AM +L+G+ V GS +EVSLAKPPSDKKKKEEILR RERRM Q +Q R G
Sbjct: 382 VHFEDRDNAVKAMKDLDGKEVGGSNIEVSLAKPPSDKKKKEEILRARERRMTQFLQTRIG 441
Query: 194 --------PGPSGAHAPLLTG--PPM 209
P S HA ++ G PPM
Sbjct: 442 LVNTVPSFPSMSPQHAGMMPGAMPPM 467
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 33/41 (80%)
Query: 27 SSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++++ E ERT DY+KLLEYGL K +AG+LDDI+KTGK
Sbjct: 13 ANQKSGEGGDGERTQDYSKLLEYGLHKMVAGRLDDIYKTGK 53
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/170 (62%), Positives = 123/170 (72%), Gaps = 12/170 (7%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +EEKLKE+FEQ+G+VERVK+IKDYA
Sbjct: 283 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFEQFGKVERVKKIKDYA 342
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM EL+G+ + GS LEVSLAKPPSDKKKKEEILR RERRM Q + R
Sbjct: 343 FIHFEDRDHAVNAMKELDGKDLGGSNLEVSLAKPPSDKKKKEEILRARERRMNQFLTSRM 402
Query: 193 GP--------GPSGAHAPLLTG--PPM--PRGSVPLQAALSSTRMGRGDY 230
G S HA ++ PPM P G+ + A M RGDY
Sbjct: 403 GIVGEFVPPYSMSPQHAGMMPSAMPPMRIPSGASGPRGAPMRGPMSRGDY 452
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/121 (78%), Positives = 105/121 (86%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 359 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 418
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 419 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARP 478
Query: 193 G 193
G
Sbjct: 479 G 479
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 55 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 94
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/121 (78%), Positives = 105/121 (86%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 359 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 418
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 419 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARP 478
Query: 193 G 193
G
Sbjct: 479 G 479
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 55 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 94
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/121 (78%), Positives = 105/121 (86%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 351 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 410
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R
Sbjct: 411 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARP 470
Query: 193 G 193
G
Sbjct: 471 G 471
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 24 MAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ + +++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 43 LDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 86
>gi|357614246|gb|EHJ68984.1| hypothetical protein KGM_20249 [Danaus plexippus]
Length = 260
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 96/124 (77%), Positives = 106/124 (85%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ TEE LKE FE+YG VERVK+IKDYA
Sbjct: 59 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQEITEEALKEEFERYGNVERVKKIKDYA 118
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
FVHFEDR A+ AM E++G+ + G+ LEVSLAKPPSDKKKKEEILR RERRM QM+ GRG
Sbjct: 119 FVHFEDRDCAVKAMQEIDGKELGGARLEVSLAKPPSDKKKKEEILRARERRMTQMIYGRG 178
Query: 193 GPGP 196
G P
Sbjct: 179 GCSP 182
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/121 (78%), Positives = 105/121 (86%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ TEE LKE FE+YG VERVK+IKDYA
Sbjct: 370 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQEITEEALKEEFERYGNVERVKKIKDYA 429
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
FVHFEDR A+ AM E++G+ + G+ LEVSLAKPPSDKKKKEEILR RERRM QM+ GRG
Sbjct: 430 FVHFEDRDCAVKAMQEIDGKELGGARLEVSLAKPPSDKKKKEEILRARERRMTQMIYGRG 489
Query: 193 G 193
G
Sbjct: 490 G 490
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 6/50 (12%)
Query: 24 MAESSREA--EEKPSSE----RTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
MAE + E EE P + RTPDY KL++YGLD ++A KLDDI+KTGK
Sbjct: 1 MAEGNGEISIEEVPGKDSDAGRTPDYIKLIDYGLDPKVATKLDDIYKTGK 50
>gi|170034902|ref|XP_001845311.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
gi|167876604|gb|EDS39987.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
Length = 542
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 99/147 (67%), Positives = 115/147 (78%), Gaps = 10/147 (6%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +EEKLKE+FE +G+VERVK+IKDYA
Sbjct: 242 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFEAFGKVERVKKIKDYA 301
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
FVHFEDR A+ AM +L+G+ + GS +EVSLAKPPSDKKKKEEILR RERRM Q +Q R
Sbjct: 302 FVHFEDRDHAVNAMKDLDGKDINGSAIEVSLAKPPSDKKKKEEILRARERRMNQFLQSRM 361
Query: 193 GP--------GPSGAHAPLLTG--PPM 209
G S HA +++G PPM
Sbjct: 362 GIVGDFVPPYSMSPQHAGMMSGAMPPM 388
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 37 SERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
ERT DYTKLLEYGLDK++AGKLDDI+KTGK
Sbjct: 34 GERTEDYTKLLEYGLDKKVAGKLDDIYKTGK 64
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/144 (68%), Positives = 118/144 (81%), Gaps = 5/144 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMS+VKVLYVRNLTQ TEEKLKEAFE +G ++RVK+IKDYA
Sbjct: 328 GCDIIVDWADPQEEPDNDTMSRVKVLYVRNLTQEFTEEKLKEAFEAHGPIQRVKKIKDYA 387
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM-QMMQGR 191
FVHFE+R +A+ AM+ LNG T+ G+ LEVSLAKPPSD+KKKEEIL+ RERR++ Q R
Sbjct: 388 FVHFEERDDAVQAMDALNGHTLYGANLEVSLAKPPSDRKKKEEILKARERRLLQQQFVQR 447
Query: 192 GGPGPSGAHAPLLTGPPMPRGSVP 215
GGPG SG P++ PP RG+ P
Sbjct: 448 GGPG-SGL-VPVV--PPALRGARP 467
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 24 MAESSREAEEKPSS-ERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79
MA+ EA + SS E +Y +L+E GLD+R+AGKL++I++TGK + S D +D
Sbjct: 1 MADGGEEAAARVSSPEHLEEYHRLIELGLDRRVAGKLEEIYRTGKLVHSELDDRALD 57
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/161 (65%), Positives = 119/161 (73%), Gaps = 11/161 (6%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD ETMSKVKVLYVRNLTQ TE +LKE FE +G VERVK+IKDYA
Sbjct: 312 GCDIIVDWADPQEEPDDETMSKVKVLYVRNLTQEVTENRLKETFEVHGSVERVKKIKDYA 371
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HF DR A+ A+ ELNG + G+TLEVSLAKPPSDKKKKEEILR RERRM MQGR
Sbjct: 372 FIHFNDRGCALKALEELNGSNLDGATLEVSLAKPPSDKKKKEEILRARERRMFTNMQGRA 431
Query: 193 -GPGPSGAHAPL-LTGPPMPRGSVPLQAALSSTRM-GRGDY 230
G P PL L G P P +A ++ RM GRG++
Sbjct: 432 FGLMPQ----PLSLMGAPRPG----YRAVSNNLRMAGRGEF 464
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Query: 31 AEEKPS-SERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
A+E P+ ++++ D+ KLLEYG+ + +A +LD+I+K+GK
Sbjct: 12 ADESPADAQKSEDHKKLLEYGIHESVADRLDEIYKSGK 49
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/121 (74%), Positives = 106/121 (87%), Gaps = 1/121 (0%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRIKDY 131
GCDIIVDWADPQEEPD+ETMSKVKVLYVRNLTQ TEEKLKE FE++G RVERVK+I+DY
Sbjct: 326 GCDIIVDWADPQEEPDSETMSKVKVLYVRNLTQEVTEEKLKEVFEEFGGRVERVKKIRDY 385
Query: 132 AFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
AFVHFEDR++A+ A+ + N + G+ +EVSLAKPPSDKKK+EEILRNRERR+MQM+ R
Sbjct: 386 AFVHFEDREDALRALEKNNNREAGGAPMEVSLAKPPSDKKKREEILRNRERRIMQMLHSR 445
Query: 192 G 192
Sbjct: 446 A 446
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 6/51 (11%)
Query: 39 RTPDYTKLLEYGLDKRIAGKLDDIFKTGK----HLLSRGCDIIVDWADPQE 85
R+PDY KL+ +GL + +A +LDDIFKTGK L R D + ++ PQE
Sbjct: 35 RSPDYQKLIGHGLHQVVATQLDDIFKTGKLSYSDLDERALDALKEF--PQE 83
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/111 (78%), Positives = 101/111 (90%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKV+VLYVRNLTQ C+EEKLKE FEQYG++ERVK+IKDYA
Sbjct: 317 GCDIIVDWADPQEEPDEQTMSKVRVLYVRNLTQDCSEEKLKECFEQYGKIERVKKIKDYA 376
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
F+HFE+R+ A+ AM ELNG+ + GS +EVSLAKPPSDKKKKEE+LR RERR
Sbjct: 377 FIHFEERECAVKAMRELNGKEMGGSHIEVSLAKPPSDKKKKEEMLRARERR 427
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 25 AESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
AE + EE ERT DY+KL++YGL++++AGKLD+I+KTGK
Sbjct: 10 AEDKQSKEEMEYVERTEDYSKLIQYGLNEKVAGKLDEIYKTGK 52
>gi|340728522|ref|XP_003402571.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Bombus terrestris]
Length = 140
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/145 (66%), Positives = 111/145 (76%), Gaps = 11/145 (7%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151
MSKV+VLYV+NLTQ C+EEKLKE+FEQYG +ERVK+IKDYAFVHFE+R A+ AMNELNG
Sbjct: 1 MSKVRVLYVKNLTQDCSEEKLKESFEQYGNIERVKKIKDYAFVHFEERDNAVKAMNELNG 60
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGPPMP- 210
+ + GS +EVSLAKPPSDKKKKEE+LR RERRMMQM QGR G PS P + G PMP
Sbjct: 61 KEIGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMFQGRSGGSPS---HPSMMGGPMPV 117
Query: 211 RGSVPLQ-----AALSSTRMGRGDY 230
RG P Q A +MGRGDY
Sbjct: 118 RG--PGQGPRGTGAGMRGQMGRGDY 140
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/108 (77%), Positives = 96/108 (88%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
CDIIVDWADPQEEPD ETM+KVKVLYVRNLT TEE+LKE FEQ+GRVERVK+IKDYAF
Sbjct: 321 CDIIVDWADPQEEPDQETMAKVKVLYVRNLTADVTEERLKELFEQHGRVERVKKIKDYAF 380
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRE 181
VHFE+R A+ AMN+L G+ + G+ +EVSLAKPPSDKKKKEE+LRNRE
Sbjct: 381 VHFEERDHAVKAMNQLQGKDLCGAPMEVSLAKPPSDKKKKEEVLRNRE 428
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 4/49 (8%)
Query: 23 TMAESSREAEE-KPSSE---RTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
TMAE + +A +P+ E ++PDY KLL +GL +++A +LD IF+TGK
Sbjct: 9 TMAEGNGDATAVEPTDEAVEQSPDYAKLLGHGLQEKVAAQLDAIFQTGK 57
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 94/108 (87%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
CDIIVDWADPQEEPD ETM+KVKVLYVRNLT TEEKLKE FE +GRVERVK+IKDYAF
Sbjct: 314 CDIIVDWADPQEEPDEETMAKVKVLYVRNLTTDVTEEKLKELFEAHGRVERVKKIKDYAF 373
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRE 181
VHFE+R A+ AM +L G+ + G+ +EVSLAKPPSDKKKKEE+LRNRE
Sbjct: 374 VHFEERDHAVRAMEQLQGKDLCGAPMEVSLAKPPSDKKKKEEVLRNRE 421
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 6/50 (12%)
Query: 24 MAESSREA------EEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
MAE + +A +E ++E + DY KL+ +GL +++A +LD IF+TGK
Sbjct: 1 MAEGNGDAATVEPMDESSATEHSADYAKLVGHGLQEKVAAQLDAIFQTGK 50
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/97 (76%), Positives = 84/97 (86%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 387 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 446
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSD
Sbjct: 447 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSD 483
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 24 MAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+ + +++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 79 LDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 122
>gi|317008639|gb|ADU79247.1| GH13679p [Drosophila melanogaster]
Length = 202
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/102 (76%), Positives = 87/102 (85%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151
MSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYAF+HFEDR A+ AM LNG
Sbjct: 1 MSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYAFIHFEDRDSAVEAMRGLNG 60
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGG 193
+ + S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R G
Sbjct: 61 KEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARPG 102
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 6/129 (4%)
Query: 65 TGKHLLSRG------CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQ 118
T K LS G CD+IVDWADP + PD ETMSKVKVLYVRNLT TE+ +KE F +
Sbjct: 297 TAKRKLSTGRLKVWNCDVIVDWADPVDNPDDETMSKVKVLYVRNLTSEVTEDIMKEKFGE 356
Query: 119 YGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+G++ER K++KDY F+HFEDR +AI AM +NGQ + +EVSLAKPPS+ KKKE+ R
Sbjct: 357 FGKIERAKKVKDYGFIHFEDRDDAIKAMQAMNGQKIGKLEIEVSLAKPPSENKKKEQRKR 416
Query: 179 NRERRMMQM 187
+ER+ M M
Sbjct: 417 EQERQSMMM 425
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/111 (63%), Positives = 90/111 (81%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCD+IVDWADP ++PD++TMSKVKVLYVRNLT TE+ LKE F +YG+VERVK+IKDY
Sbjct: 315 GCDVIVDWADPIDDPDSDTMSKVKVLYVRNLTSDVTEDTLKEKFGEYGKVERVKKIKDYG 374
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
F+HFE+R +A+ AM +NGQ + +EVSLAKPPS+ KKKE+ R++E R
Sbjct: 375 FIHFEERDDAVKAMEGMNGQKLGKLEMEVSLAKPPSENKKKEQRKRDQECR 425
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
CDIIVDWADPQEEPD ETMSKVKVLYVRNL Q TE++++E FE +G+VERVK+IKDY F
Sbjct: 328 CDIIVDWADPQEEPDEETMSKVKVLYVRNLKQDVTEDQIREKFEVFGKVERVKKIKDYGF 387
Query: 134 VHFEDRQEAITAMNELNG--QTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
VHFE+R+ A+ AM +LNG + GS +E+SLAKPP++ KKKE+ R RE+
Sbjct: 388 VHFEEREHALAAMKDLNGKQELGEGSVMEISLAKPPTENKKKEQ--RKREQ 436
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRG 73
+ E T DY KL+EYG++ ++A +LDDI+K+G +LS G
Sbjct: 23 NHEHTEDYDKLIEYGINAKVAEELDDIYKSG--ILSHG 58
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 87/109 (79%)
Query: 75 DIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFV 134
++ VDWADPQEEPD ETM+KVKVLYVRNLT EEKLKEAF+ +G VERVK++KDY FV
Sbjct: 330 NVTVDWADPQEEPDEETMAKVKVLYVRNLTPDAEEEKLKEAFQAFGTVERVKKLKDYCFV 389
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
HFE+R A+ AM ELNG+ V GS +++SLAKPPS+ KKK+E + R R
Sbjct: 390 HFEERDAAVKAMEELNGKEVEGSVVDISLAKPPSENKKKKERQQTRGGR 438
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 86/113 (76%), Gaps = 4/113 (3%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVH 135
+ VDWADP EEPD E MSKVKVLYVRNL EE ++ FE YG VERVK+IKDYAFVH
Sbjct: 311 VTVDWADPIEEPDDEVMSKVKVLYVRNLAVEAAEEIIQAKFEPYGTVERVKKIKDYAFVH 370
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMM 188
FE+R++AI AM +LNG+ + GS +E+SLAKPPS+KKK+ R R+R +MM
Sbjct: 371 FENREDAIKAMEDLNGKELEGSAMEISLAKPPSEKKKE----RKRQREQEKMM 419
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 79/104 (75%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 128
L + D++VDWA+ QEEPD ETM+KVKVLYVRNL + TEE+LKE F +G V+ VK+I
Sbjct: 349 LRAWNLDLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHVKKI 408
Query: 129 KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
KDYAF+HF +R+ A+ AM LNG + G +E+SLAKP SDKKK
Sbjct: 409 KDYAFIHFNEREPAVKAMEALNGTVLEGVPIEISLAKPQSDKKK 452
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/109 (58%), Positives = 81/109 (74%), Gaps = 3/109 (2%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
D++VDWA+ QEEPD ETMSKVKVLYVRNL + TEE+LKE F +G VER K+I+DYAF
Sbjct: 354 SDLVVDWAEQQEEPDEETMSKVKVLYVRNLKEAVTEEQLKEMFAAHGEVERAKKIRDYAF 413
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
+HF++R+ A+ AM LNG + G +E+SLAKP DKKK +R R R
Sbjct: 414 IHFKEREPALKAMEALNGTVLEGIAIEISLAKPQGDKKK---TVRGRGR 459
>gi|324506631|gb|ADY42829.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 341
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 81/108 (75%), Gaps = 3/108 (2%)
Query: 75 DIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFV 134
D++VDWA+ QEEPD ETMSKVKVLYVRNL + TEE+LKE F +G VER K+I+DYAF+
Sbjct: 77 DLVVDWAEQQEEPDEETMSKVKVLYVRNLKEAVTEEQLKEMFAAHGEVERAKKIRDYAFI 136
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
HF++R+ A+ AM LNG + G +E+SLAKP DKKK +R R R
Sbjct: 137 HFKEREPALKAMEALNGTVLEGIAIEISLAKPQGDKKK---TVRGRGR 181
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 79/104 (75%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 128
L + D++VDWA+ QEEPD ETM+KVKVLYVRNL + TEE+LKE F +G V+ VK+I
Sbjct: 349 LRAWNLDLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHVKKI 408
Query: 129 KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
KDYAF+HF +R+ A+ AM LNG + G +E+SLAKP SDKKK
Sbjct: 409 KDYAFIHFNEREPAVKAMEALNGTVLEGVPIEISLAKPQSDKKK 452
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 79/104 (75%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 128
L + D++VDWA+ QEEPD ETM+KVKVLYVRNL + TEE+LKE F +G V+ VK+I
Sbjct: 337 LRAWNLDLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHVKKI 396
Query: 129 KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
KDYAF+HF +R+ A+ AM LNG + G +E+SLAKP SDKKK
Sbjct: 397 KDYAFIHFNEREPAVKAMEALNGTVLEGVPIEISLAKPQSDKKK 440
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 77/99 (77%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
D++VDWA+ QEEPD ETM+KVKVLYVRNL + TEE+LKE F YG V+R K+I+DYAF
Sbjct: 449 SDLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDRAKKIRDYAF 508
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
+HF +R+ AI AM LNG + G +++SLAKP SDKKK
Sbjct: 509 IHFMEREPAIKAMEALNGTELEGIAIDISLAKPQSDKKK 547
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 77/99 (77%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
D++VDWA+ QEEPD ETM+KVKVLYVRNL + TEE+LKE F YG V+R K+I+DYAF
Sbjct: 469 SDLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDRAKKIRDYAF 528
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
+HF +R+ AI AM LNG + G +++SLAKP SDKKK
Sbjct: 529 IHFMEREPAIKAMEALNGTELEGIAIDISLAKPQSDKKK 567
>gi|324501089|gb|ADY40490.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 418
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 79/104 (75%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 128
L + D++VDWA+ QEEPD ETM+KVKVLYVRNL + TEE+LKE F +G V+ VK+I
Sbjct: 90 LRAWNLDLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHVKKI 149
Query: 129 KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
KDYAF+HF +R+ A+ AM LNG + G +E+SLAKP SDKKK
Sbjct: 150 KDYAFIHFNEREPAVKAMEALNGTVLEGVPIEISLAKPQSDKKK 193
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
Query: 65 TGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER 124
+G+ + ++ VDWADP EPD++TMSKVKV+Y+RNL+ TE K+KE F QYG VE+
Sbjct: 316 SGRIKVWNQINVNVDWADPVIEPDSDTMSKVKVVYIRNLSTETTEVKIKEDFGQYGEVEK 375
Query: 125 VKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP-SDKKKKEEILRNR 180
K++KDY FVHF++R A+ A+ E+NG+ G+T+EVSLAKPP +KKKKE I+R +
Sbjct: 376 AKKMKDYCFVHFKERDAAVKAIEEMNGKEYEGTTIEVSLAKPPMENKKKKERIMRQQ 432
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 77/98 (78%)
Query: 75 DIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFV 134
D++VDWA+ QEEPD ETM+KVKVLYVRNL + TEE+LKE F YG V+R K+I+DYAF+
Sbjct: 437 DLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDRAKKIRDYAFI 496
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
HF +R+ AI AM LNG + G +++SLAKP SDKKK
Sbjct: 497 HFMEREPAIKAMEALNGTELEGIAIDISLAKPQSDKKK 534
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 81/117 (69%), Gaps = 4/117 (3%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVH 135
+ VDWADP EEP E MSKVKVLY++NL+ TEE + F YG VERVK+IKDYAFVH
Sbjct: 318 VSVDWADPVEEPSDEIMSKVKVLYIKNLSMKATEEIVMATFSAYGEVERVKKIKDYAFVH 377
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F++R A+ A+ ELNG + G +E+SLAK P DKKKKE R ER+MM G G
Sbjct: 378 FKERDNAMKALEELNGLNLEGEAIEISLAK-PVDKKKKE---RQMERKMMTHAYGMG 430
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKELEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 83/122 (68%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYA
Sbjct: 315 GNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYA 374
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HF++R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 375 FIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYY 434
Query: 193 GP 194
GP
Sbjct: 435 GP 436
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 83/122 (68%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYA
Sbjct: 315 GNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYA 374
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HF++R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 375 FIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYY 434
Query: 193 GP 194
GP
Sbjct: 435 GP 436
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 83/122 (68%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYA
Sbjct: 315 GNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYA 374
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HF++R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 375 FIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYY 434
Query: 193 GP 194
GP
Sbjct: 435 GP 436
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Query: 46 LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQ 105
LEY D + A + +GK + G + V+WADP E+PD E M+KVKVL+VRNL
Sbjct: 152 FLEY-EDHKTAAQARRRLMSGK-VKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLAN 209
Query: 106 YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
TEE L++AF Q+G++ERVK++KDYAF+HF++R A+ AM E+NG+ + G +E+ AK
Sbjct: 210 TVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 269
Query: 166 PPSDKKKKEEILRNRERRMMQMMQGRGGP 194
PP K+K+ + R + M GP
Sbjct: 270 PPDQKRKERKAQRQAAKNQMYDDYYYYGP 298
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 80/110 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EPD E M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYA
Sbjct: 316 GNPVTVEWADPVAEPDPEVMAKVKVLFVRNLATAVTEELLEKTFAQFGKLERVKKLKDYA 375
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFE+R A+ AM+E+NG+ V G +E+ LAKPP K+K+ + R R
Sbjct: 376 FVHFEERDAAVRAMDEMNGKEVGGEEIEIVLAKPPDKKRKERQAARQTTR 425
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 80/110 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EPD E M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYA
Sbjct: 316 GNPVTVEWADPVAEPDPEVMAKVKVLFVRNLATAVTEELLEKTFAQFGKLERVKKLKDYA 375
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFE+R A+ AM+E+NG+ V G +E+ LAKPP K+K+ + R R
Sbjct: 376 FVHFEERDAAVRAMDEMNGKEVGGEEIEIVLAKPPDKKRKERQAARQTTR 425
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 335 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 394
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 395 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 451
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 317 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 376
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 377 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 433
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 292 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 351
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 408
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 422 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 481
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 482 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 538
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 317 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 376
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 377 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 433
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 92/137 (67%), Gaps = 2/137 (1%)
Query: 46 LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQ 105
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL+
Sbjct: 192 FLEY-EDHKTAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEIMAKVKVLFVRNLSS 249
Query: 106 YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
TEE L++AF +G++ERVK++KDYAFVHF++R A+ AM+E+NG + G +E+ LAK
Sbjct: 250 TVTEEILEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNGAELEGEEIEIVLAK 309
Query: 166 PPSDKKKKEEILRNRER 182
PP K+K+ + R R
Sbjct: 310 PPDKKRKERQAARQASR 326
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 335 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 394
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 395 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 451
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 356 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 415
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 416 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 472
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 222 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 281
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 282 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 338
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 323 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 382
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 383 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 439
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 222 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 281
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 282 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 338
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 168 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 227
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 228 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 284
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 168 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 227
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 228 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 284
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 168 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 227
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 228 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 284
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 168 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 227
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 228 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 284
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 92/137 (67%), Gaps = 2/137 (1%)
Query: 46 LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQ 105
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL+
Sbjct: 195 FLEY-EDHKTAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEIMAKVKVLFVRNLSS 252
Query: 106 YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
TEE L++AF +G++ERVK++KDYAFVHF++R A+ AM+E+NG + G +E+ LAK
Sbjct: 253 TVTEEILEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNGTELEGEEIEIVLAK 312
Query: 166 PPSDKKKKEEILRNRER 182
PP K+K+ + R R
Sbjct: 313 PPDKKRKERQAARQASR 329
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 230 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 289
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 290 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 346
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 83/122 (68%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYA
Sbjct: 314 GNLVTVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEEILEKTFSQHGKLERVKKLKDYA 373
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFE+R+ A+ A+ +LNG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 374 FIHFEERESAVKALTDLNGKDLEGEHIEIVFAKPPDQKRKERKAQRQAAKTQMYDDYYYY 433
Query: 193 GP 194
GP
Sbjct: 434 GP 435
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 81/122 (66%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G +ERVK++KDYA
Sbjct: 315 GNLVTVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKAFGQFGNLERVKKLKDYA 374
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
FVHF DR A+ A+ E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 375 FVHFNDRDGAVKALTEMNGKELEGEHIEIVFAKPPDQKRKERKAQRQAAKTQMYDDYYYY 434
Query: 193 GP 194
GP
Sbjct: 435 GP 436
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 92/137 (67%), Gaps = 2/137 (1%)
Query: 46 LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQ 105
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL+
Sbjct: 192 FLEY-EDHKTAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEIMAKVKVLFVRNLSS 249
Query: 106 YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
TEE L++AF +G++ERVK++KDYAFVHF++R A+ AM+E+NG + G +E+ LAK
Sbjct: 250 TVTEEILEKAFSVFGKLERVKKLKDYAFVHFDERDAAVRAMDEMNGTELEGEEIEIVLAK 309
Query: 166 PPSDKKKKEEILRNRER 182
PP K+K+ + R R
Sbjct: 310 PPDKKRKERQAARQASR 326
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 82/113 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E MSKVKVL+VRNL TEE L++AF Q+G++ERVK++KDYA
Sbjct: 319 GNVVTVEWADPIEDPDPEVMSKVKVLFVRNLANTVTEEILEKAFGQFGKLERVKKLKDYA 378
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
F+HF++R A+ AM+E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 379 FIHFDERVGAVKAMDEMNGKELEGENIEIVFAKPPDQKRKERKAQRQAAKTQM 431
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 2/149 (1%)
Query: 46 LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQ 105
LEY D + A + +GK + G + V+WADP E+PD E M+KVKVL+VRNL
Sbjct: 301 FLEY-EDHKTAAQARRRLMSGK-VKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLAN 358
Query: 106 YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
TEE L++AF Q+G++ERVK++KDYAF+HF++R A+ AM +NG+ + G +E+ AK
Sbjct: 359 SVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEGMNGKELEGENIEIVFAK 418
Query: 166 PPSDKKKKEEILRNRERRMMQMMQGRGGP 194
PP K+K+ + R + M GP
Sbjct: 419 PPDQKRKERKAQRQAAKNQMYDDYYYYGP 447
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 393 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 452
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 453 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 509
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 323 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 382
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 383 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 439
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 371 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 430
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 431 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 487
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 364 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 423
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 424 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 480
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 255 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 314
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 315 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 371
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 230 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 289
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 290 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 346
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 79/108 (73%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQM 427
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Query: 46 LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQ 105
LEY D + A + +GK + G + V+WADP E+PD E M+KVKVL+VRNL
Sbjct: 290 FLEYE-DHKTAAQARRRLMSGK-VKVWGNMVTVEWADPMEDPDPEVMAKVKVLFVRNLAN 347
Query: 106 YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
TEE L++AF +YG +ERVK++KDYAF+HFE+R A+ A+ ELNG+ + G +E+ AK
Sbjct: 348 SVTEEILEKAFSEYGNLERVKKLKDYAFIHFEERDGAVKALEELNGKELEGEPIEIVFAK 407
Query: 166 PPSDKKKKEEILR 178
PP K+K+ + R
Sbjct: 408 PPDQKRKERKAQR 420
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 81/113 (71%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYA
Sbjct: 315 GNLVTVEWADPLEDPDPEVMAKVKVLFVRNLASSVTEELLEKAFSQFGKLERVKKLKDYA 374
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
F+HFE+R A+ A+ +LNG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 375 FIHFEERDGAVKALADLNGKDLEGEHIEIVFAKPPDQKRKERKAQRQAAKTHM 427
>gi|74194008|dbj|BAE36923.1| unnamed protein product [Mus musculus]
Length = 368
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 81/118 (68%)
Query: 77 IVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHF 136
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF
Sbjct: 64 TVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHF 123
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
++R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 124 DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 181
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 79/108 (73%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQM 427
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 92/140 (65%), Gaps = 2/140 (1%)
Query: 46 LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQ 105
LEY D + A + +GK + G + V+WADP E+PD E M+KVKVL+VRNL
Sbjct: 437 FLEY-EDHKTAAQARRRLMSGK-VKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLAN 494
Query: 106 YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
TEE L++AF Q+G++ERVK++KDYAF+HF++R A+ AM E+NG+ + G +E+ AK
Sbjct: 495 TVTEEILEKAFGQFGKLERVKKLKDYAFIHFDERVGAVKAMEEMNGKELEGENIEIVFAK 554
Query: 166 PPSDKKKKEEILRNRERRMM 185
PP K+K+ + R + M
Sbjct: 555 PPDQKRKERKAQRQAAKNQM 574
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 81/113 (71%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYA
Sbjct: 330 GNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFGQFGKLERVKKLKDYA 389
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
F+HF++R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 390 FIHFDERVGAVKAMEEMNGKELEGENIEIVFAKPPDQKRKERKAQRQAAKNQM 442
>gi|224613218|gb|ACN60188.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 583
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 80/106 (75%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD+E M+KVKVL+VRNL TEE L+++F Q+GR+ERVK++KDYA
Sbjct: 270 GNAVTVEWADPIEEPDSEVMAKVKVLFVRNLANSVTEEILEKSFGQFGRLERVKKLKDYA 329
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
F+HF++R A+ A+ E+NG+ + G +++ AKPP K+K+ + R
Sbjct: 330 FIHFDERDSAVKALAEMNGKDLEGEHIDIVFAKPPDQKRKERKAQR 375
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 249 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 308
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ A PP K+K+ + R+ + M GP
Sbjct: 309 ERDGAVKAMEEMNGKDLEGENIEIVFANPPDKKRKERKAQRHAAKNQMYDDYYYYGP 365
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 78/102 (76%), Gaps = 1/102 (0%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP +EPD E M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYA
Sbjct: 318 GNPVTVEWADPVDEPDPEIMAKVKVLFVRNLATPVTEELLEKTFSQFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKE 174
FVHFEDR A+ AM E+N + + G +E+ LAKPP DKK+KE
Sbjct: 378 FVHFEDRDAAVKAMQEMNCKELEGEEIEIVLAKPP-DKKRKE 418
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 78/110 (70%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EPD E M+KVKVL+VR L TEE L++ F Q+G++ERVK++KDYA
Sbjct: 318 GNPVTVEWADPVAEPDPEVMAKVKVLFVRKLATAVTEELLEKTFSQFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFE+R A+ AM E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEERDAAVKAMEEMNGKELGGEEIEIVLAKPPDKKRKERQAARQTTR 427
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 80/113 (70%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYA
Sbjct: 315 GNVVTVEWADPIEDPDPEVMAKVKVLFVRNLASAVTEELLEKTFSQFGKLERVKKLKDYA 374
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
F+HFE+R A+ A+ +LNG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 375 FIHFEERDSAVKALGDLNGKDLEGEHIEIVFAKPPDQKRKERKAQRQAAKTQM 427
>gi|221039872|dbj|BAH11699.1| unnamed protein product [Homo sapiens]
Length = 256
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WA+P E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERV+++KDYAF+HF+
Sbjct: 14 VEWANPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVEKLKDYAFIHFD 73
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 74 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 130
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AMNE+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMNEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AMNE+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMNEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AMNE+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMNEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AMNE+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMNEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 78 VDWADPQEEPDTETMSKV-KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHF 136
V+WADP E+PD E M+KV KVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF
Sbjct: 320 VEWADPIEDPDPEVMAKVMKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHF 379
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
++R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 437
>gi|149018944|gb|EDL77585.1| rCG25340, isoform CRA_a [Rattus norvegicus]
gi|149018947|gb|EDL77588.1| rCG25340, isoform CRA_a [Rattus norvegicus]
Length = 254
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 75/96 (78%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 14 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 73
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
+R A+ AM E+NG+ + G +E+ AKPP K+K+
Sbjct: 74 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 109
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Query: 46 LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQ 105
LEY D + A + +GK + G + V+WADP E+PD E M+KVKVL+VRNL
Sbjct: 294 FLEYE-DHKTAAQARRRLMSGK-VKVWGNMVTVEWADPMEDPDPEVMAKVKVLFVRNLAN 351
Query: 106 YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
TEE L+++F +YG +ERVK++KDYAF+HFE+R A+ A+ E+NG+ + G +E+ AK
Sbjct: 352 SVTEEILEKSFSEYGNLERVKKLKDYAFIHFEERDGAVKALEEMNGKELEGEPIEIVFAK 411
Query: 166 PPSDKKKKEEILR 178
PP K+K+ + R
Sbjct: 412 PPDQKRKERKAQR 424
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 78/110 (70%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EPD + M+KVKVL+VR L TEE L++ F +G++ERVK++KDYA
Sbjct: 321 GNPVTVEWADPVAEPDPDVMAKVKVLFVRKLATPVTEELLEKTFSAFGKLERVKKLKDYA 380
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 381 FVHFEDRDAAVKAMSEMNGKELGGEEIEIVLAKPPDKKRKERQAQRQTTR 430
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 77/101 (76%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 222 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 281
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 282 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 322
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 80/106 (75%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L+++F +G++ERVK++KDYA
Sbjct: 322 GILVTVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKSFSAFGKLERVKKLKDYA 381
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
F+HFE+R+ A+ A++E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 382 FIHFEEREGAVKALDEMNGKELEGEPIEIVFAKPPDQKRKERKAQR 427
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 77/101 (76%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 222 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 281
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 282 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 322
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 83/124 (66%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYA
Sbjct: 326 GNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKSFSQFGKLERVKKLKDYA 385
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
FVHF++R A+ A+ ++NG+ + G +++ AKPP K+K+ + R + M
Sbjct: 386 FVHFDERDAAVKALAQMNGKVLEGEHIDIVFAKPPDQKRKERKAQRQAAKTNMYDDDYYY 445
Query: 193 GPGP 196
GP
Sbjct: 446 NYGP 449
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 78/110 (70%)
Query: 63 FKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRV 122
F TG+ + VDWADP EEPD MSKVKV+YVRNL+ E KL E F+QYG V
Sbjct: 308 FMTGRIKVFGNITPTVDWADPVEEPDDNVMSKVKVVYVRNLSPAIEETKLNELFKQYGAV 367
Query: 123 ERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
E+VK++KDYAF+HF +R +A+ A+ ELNGQ + +EVSLAKP ++KK+
Sbjct: 368 EKVKKLKDYAFIHFVNRDDAVRAIEELNGQDLDDLKIEVSLAKPQTEKKE 417
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYA
Sbjct: 316 GNVVTVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEELLEKTFCQFGKLERVKKLKDYA 375
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFE+R A+ A+ EL+G+ + G +E+ AKPP K+K+ + R+ QM
Sbjct: 376 FIHFEERDGAVKALAELHGKDLEGEPIEIVFAKPPDQKRKERKA--QRQAAKTQMYDEYY 433
Query: 193 GPGPSGAHAP 202
GP H P
Sbjct: 434 YYGPPHVHQP 443
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYA
Sbjct: 316 GNVVTVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEELLEKTFCQFGKLERVKKLKDYA 375
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
F+HFE+R A+ A+ EL+G+ + G +E+ AKPP K+K+ + R+ QM
Sbjct: 376 FIHFEERDGAVKALAELHGKDLEGEPIEIVFAKPPDQKRKERKA--QRQAAKTQMYDEYY 433
Query: 193 GPGPSGAHAP 202
GP H P
Sbjct: 434 YYGPPHVHQP 443
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EPD E M+KVKVL+VR L TEE L++ F Q+G++ERVK++KDYA
Sbjct: 320 GNPVTVEWADPVAEPDPEVMAKVKVLFVRKLATAVTEELLEKTFSQFGKLERVKKLKDYA 379
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFE+R A+ AM +NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 380 FVHFEERDAAVQAMEGMNGKELGGEEIEIVLAKPPDKKRKERQAARQTTR 429
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 259 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 318
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 319 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 368
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 293 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 352
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 353 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 402
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 287 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 346
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 347 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 396
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 242 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 301
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 302 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 351
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 296 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 355
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 356 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 405
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 217 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 276
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 277 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 326
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 290 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 349
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 350 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 399
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 376 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 435
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 436 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 485
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 321 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 380
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 381 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 430
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 321 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 380
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 381 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 430
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 301 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 360
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 361 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 410
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 298 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 357
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 358 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 407
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 217 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 276
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 277 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 326
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 220 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 279
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 280 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 329
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 263 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 322
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 323 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 372
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 292 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 351
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 352 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 401
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 280 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 339
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 340 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 389
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 217 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 276
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 277 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 326
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 158 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 217
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 218 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 267
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 217 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 276
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 277 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 326
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 158 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 217
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 218 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 267
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 158 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 217
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 218 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 267
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 158 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 217
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 218 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 267
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 280 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 339
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 340 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 389
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 280 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 339
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 340 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 389
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 280 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 339
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 340 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 389
>gi|417410140|gb|JAA51547.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 369
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 54 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 113
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 114 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 163
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 80/113 (70%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYA
Sbjct: 316 GNVVTVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEELLEKTFCQFGKLERVKKLKDYA 375
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
F+HFE+R A+ A+ EL+G+ + G +E+ AKPP K+K+ + R + M
Sbjct: 376 FIHFEERDGAVKALAELHGKDLEGEPIEIVFAKPPDQKRKERKAQRQAAKTQM 428
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 79/106 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP E+PD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 315 GNLVTVEWADPIEDPDPEVMAKVKVLFVRNLANGVTEELLEKSFSEFGKLERVKKLKDYA 374
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
F+HFE+R A+ A+ E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 375 FIHFEERDGAVKALEEMNGKELEGEPIEIVFAKPPDQKRKERKAQR 420
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 280 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 339
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 340 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 389
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 182 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 241
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 242 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 291
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 179 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 238
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 239 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 288
>gi|355694936|gb|AER99836.1| heteroproteinous nuclear ribonucleoprotein R [Mustela putorius
furo]
Length = 363
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 49 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 108
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 109 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 158
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 94 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 153
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 154 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 203
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EPD + M+KVKVL+VR L TEE L++ F +G++ERVK++KDYA
Sbjct: 320 GNPVTVEWADPVAEPDPDVMAKVKVLFVRKLAIPVTEELLEKTFSAFGKLERVKKLKDYA 379
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 380 FVHFEDRDAAVKAMAEMNGKELGGEGIEIVLAKPPDKKRKERQAHRQTTR 429
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVH 135
+ VDWADPQEEPD + M KVKV+Y+RNL+ TEEKLKE + QYG V+RVK++KDYAFVH
Sbjct: 309 VTVDWADPQEEPDDDAMKKVKVVYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKDYAFVH 368
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKP-PSDKKKK 173
F +R A+ A+ E +G+ + G +E SLAKP P +K ++
Sbjct: 369 FTERDHALKAIEETDGKEMDGLKIEASLAKPQPGNKDRQ 407
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 71/90 (78%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 356 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 415
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPP 167
+R A+ AM E+NG+ + G +E+ AKPP
Sbjct: 416 ERDGAVKAMEEMNGKDLEGENIEIVFAKPP 445
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 81/107 (75%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVH 135
+ V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVH
Sbjct: 125 VTVEWADPVEEPDPEVMAKVKVLFVRNLVTRVTEEILEKSFSEFGKLERVKKLKDYAFVH 184
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 185 FEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 231
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 71/90 (78%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 360 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 419
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPP 167
+R A+ AM E+NG+ + G +E+ AKPP
Sbjct: 420 ERDGAVKAMEEMNGKDLEGENIEIVFAKPP 449
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 71/90 (78%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPP 167
+R A+ AM E+NG+ + G +E+ AKPP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPP 409
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 70/91 (76%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
D+ VDWA+ QEEPD +TMSKVKVLY+RN+ + TEEKL E F++Y ++RVK++KDYAF
Sbjct: 355 ADVYVDWAEHQEEPDEDTMSKVKVLYIRNIKEAVTEEKLNELFKEYASLDRVKKVKDYAF 414
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+HF +R + + AM E NG+ + G+ +E SLA
Sbjct: 415 IHFNERDDCLKAMEEWNGKELEGTVVEASLA 445
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 70/91 (76%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
D+ VDWA+ Q+EPD +TMSKVKVLY+RN+ + TEEKL E F++Y ++RVK++KDYAF
Sbjct: 364 ADVYVDWAEHQDEPDADTMSKVKVLYIRNIKEAVTEEKLTELFKEYASLDRVKKVKDYAF 423
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+HF +R + + AM E NG+ + G+ +E SLA
Sbjct: 424 IHFNERDDCVKAMEEWNGKDLEGTIVEASLA 454
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 75/95 (78%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 287 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 346
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP
Sbjct: 347 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPP 381
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 71/91 (78%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
D+ VDWA+ QEEPD +TMSKVKVLY+RN+ + TEEKL E F++Y ++RVK++KDYAF
Sbjct: 373 ADVYVDWAEHQEEPDEDTMSKVKVLYIRNIKEAVTEEKLTEIFKEYASLDRVKKVKDYAF 432
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+HF +R++ + AM + NG+ + G+ +E SLA
Sbjct: 433 IHFNEREDCMKAMEQWNGKELEGTVVEASLA 463
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 88/147 (59%), Gaps = 22/147 (14%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGSVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPGPSG---------AHAPLLTGPP 208
+ P +H +L PP
Sbjct: 322 QISPNSENLIVFANKEESHPKILGKPP 348
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMMSTTEETIKAEFNKFKPGVVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q G
Sbjct: 273 YAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKESTWKQHFNG 321
Query: 191 RGGPG 195
+ PG
Sbjct: 322 QISPG 326
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 70/91 (76%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
D+ VDWA+ QEEPD +TMSKVKVLY+RN+ + TEEKL E F++Y ++RVK++KDYAF
Sbjct: 380 ADVYVDWAEQQEEPDEDTMSKVKVLYIRNIKEAVTEEKLTELFKEYASLDRVKKVKDYAF 439
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+HF +R + + AM + NG+ + G+ +E SLA
Sbjct: 440 IHFNERDDCMKAMEQWNGKELEGTVVEASLA 470
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 88/147 (59%), Gaps = 22/147 (14%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGTVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPGPSG---------AHAPLLTGPP 208
+ P +H +L PP
Sbjct: 322 QISPNSENLIVFANKEESHPKILGKPP 348
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 22/169 (13%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPGPSG---------AHAPLLTGPPMPRGSVPLQAALSSTRMGRGDY 230
+ P +H L PP + + Q + S + R Y
Sbjct: 322 QISPNSENLIVFANKEESHPKTLGKPPTLQARLNGQHSPSPPEIERCTY 370
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 22/169 (13%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPV-----------NKENTWRQHLNG 321
Query: 191 RGGPGPSG---------AHAPLLTGPPMPRGSVPLQAALSSTRMGRGDY 230
+ P +H L PP + + Q + S + R Y
Sbjct: 322 QISPNSENLIVFANKEESHPKTLGKPPTLQARLNGQHSPSPPEIERCTY 370
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 88/147 (59%), Gaps = 22/147 (14%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPGPSG---------AHAPLLTGPP 208
+ P +H+ L PP
Sbjct: 322 QISPNSENLLVYANKEESHSKALGKPP 348
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKLGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 194 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 253
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 254 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 302
Query: 191 RGGPG 195
+ P
Sbjct: 303 QISPN 307
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 439 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 498
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 499 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 547
Query: 191 RGGPG 195
+ P
Sbjct: 548 QISPN 552
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 88/147 (59%), Gaps = 22/147 (14%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 227 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 286
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 287 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 335
Query: 191 RGGPGPSG---------AHAPLLTGPP 208
+ P +H+ L PP
Sbjct: 336 QISPNSENLLVYANKEESHSKALGKPP 362
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSIMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKFIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPS 326
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKESTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKESTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM KVKVLYVRNL TEE +K F +Y G VERVK+I+D
Sbjct: 213 GRTIKVDWADPEKEVDEETMQKVKVLYVRNLMMSTTEETIKAEFNRYKPGVVERVKKIRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R AI AM+E+NG+ + G+ +EV+LAKP
Sbjct: 273 YAFVHFFRRDYAIAAMSEMNGRLIDGARIEVTLAKP 308
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 3/97 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIK 129
G I VDWA+P+ E D + M VKVLYVRNL TEE LKE+FE G VERVK+I+
Sbjct: 211 GHQIAVDWAEPEVEVDEDIMKSVKVLYVRNLLLTTTEESLKESFENVVSPGSVERVKKIR 270
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
DYAFVHF+ R+EA+ AMN NGQ + G +EV+LAKP
Sbjct: 271 DYAFVHFKTREEAVKAMNATNGQLIDGCQVEVTLAKP 307
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 142 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 201
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 202 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 250
Query: 191 RGGPG 195
+ P
Sbjct: 251 QISPN 255
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 88/147 (59%), Gaps = 22/147 (14%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPGPSG---------AHAPLLTGPP 208
+ P +H+ L PP
Sbjct: 322 QISPNSENLLVYANKEESHSKSLGKPP 348
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKLGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPV-----------NKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPV-----------NKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R +A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNRDDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKESTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QMSPS 326
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 389 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 448
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 449 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 497
Query: 191 RGGPG 195
+ P
Sbjct: 498 QISPN 502
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 83/126 (65%), Gaps = 13/126 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVL+VRNL TEE +K F ++ G VERVK+++D
Sbjct: 219 GHTIQVDWADPEKEVDEETMQRVKVLFVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 278
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ ++G+ + G+++EV+LAKP N+E Q + G
Sbjct: 279 YAFVHFFNREDAVAAMSVMSGKCIDGASIEVTLAKP-----------VNKESTWRQHLNG 327
Query: 191 RGGPGP 196
+ P P
Sbjct: 328 QMSPSP 333
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGTVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKFIDGASIEVTLAKPV-----------NKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPS 326
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 87/147 (59%), Gaps = 22/147 (14%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPGPSG---------AHAPLLTGPP 208
+ P +H+ L PP
Sbjct: 322 QISPNSENLLVYANKEESHSKSLGKPP 348
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 69/94 (73%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G I VDWA+P+ E D +TM+ VK+LYVRNL TEE +++ F VERVK+I+DYA
Sbjct: 209 GHAIAVDWAEPEVEVDEDTMATVKILYVRNLMLQTTEETIEKEFNSLKEVERVKKIRDYA 268
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
FVHF R++AI AM ELNG+ V GS +EV+LAKP
Sbjct: 269 FVHFAQREDAIHAMKELNGKVVDGSPIEVTLAKP 302
>gi|26338141|dbj|BAC32756.1| unnamed protein product [Mus musculus]
Length = 307
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 77/102 (75%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQ 140
ADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR
Sbjct: 1 ADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRG 60
Query: 141 EAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 61 AAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 102
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P++E D ETM +V+VLYVRNL TEE L+ F Q G VERVK++ D
Sbjct: 197 GHTIQVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTD 256
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAF+HF +R++A+TA+ +NG+ + GS +EV+LAKP S K R R +
Sbjct: 257 YAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKPASKDGNK----RFGPRNCHNGVTA 312
Query: 191 RGGPGPS 197
GG G S
Sbjct: 313 AGGYGDS 319
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P++E D ETM +V+VLYVRNL TEE L+ F Q G VERVK++ D
Sbjct: 210 GHTIQVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTD 269
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRN 179
YAF+HF +R++A+TA+ +NG+ + GS +EV+LAKP S K RN
Sbjct: 270 YAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKPASKDGNKRFGPRN 318
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TM+ VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 118 GHAIAVDWAEPEVEVDEDTMASVKILYVRNLMLQTTEETIEKEFNSLRPGAVERVKKIRD 177
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AMN LNG+ V GS +EV+LAKP
Sbjct: 178 YAFVHFTQREDAINAMNALNGKVVDGSPIEVTLAKP 213
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R +A+TAM+ +NG+ + G+ +EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNRDDAMTAMSVMNGKYIDGAGIEVTLAKPV-----------NKENTWRQHLNG 321
Query: 191 RGGPG 195
P
Sbjct: 322 HISPN 326
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 4/109 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G I VDWA+P+ + D + M VK+LYVRNL +EE +++ F Q+G VERVK+I+DYA
Sbjct: 222 GQQIAVDWAEPEMDVDEDVMETVKILYVRNLMIKTSEETIRKTFSQFGCVERVKKIRDYA 281
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRE 181
FVHF R++AI AMN LNG + GS L V+LAKP KE+ R R+
Sbjct: 282 FVHFTSREDAIRAMNSLNGTELEGSCLGVTLAKP----VDKEQYARYRK 326
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 82/132 (62%), Gaps = 11/132 (8%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AMN LNG + GS LEV+LAKP + + + R + +G
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP---------VDKEQYSRYQKAAKG 333
Query: 191 RGGPGPSGAHAP 202
GG + A P
Sbjct: 334 GGGSAEAVAQQP 345
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 83/126 (65%), Gaps = 13/126 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVL+VRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLFVRNLMISTTEETIKGEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ ++G+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMSGKCIDGASIEVTLAKP-----------VNKESTGRQHLNG 321
Query: 191 RGGPGP 196
+ P P
Sbjct: 322 QISPSP 327
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TM+ VK+LYVRNL TEE ++ F G VERVK+I+D
Sbjct: 209 GYPIAVDWAEPEVEVDDDTMATVKILYVRNLMLQTTEETIEREFNSLKPGAVERVKKIRD 268
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
YAFVHF R++AI AMN LNG+ V GS +EV+LAK P DK R R ++Q
Sbjct: 269 YAFVHFCQREDAINAMNALNGKLVEGSPIEVTLAK-PVDKDSYVRYTRGTGGRGSSLLQ 326
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
++V L + E++L E++G++ V+ + D YAFV F ++QEA TAM +LN
Sbjct: 59 IFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGNNRGYAFVTFSNKQEAKTAMKQLN 118
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVH 135
+ VDWADP P + M KVKVLYV+NL +E+ + + F +G +E+VK++KDYAFVH
Sbjct: 331 VTVDWADPINTPADDIMDKVKVLYVKNLATCVSEDIVSQTFAAFGEIEKVKKLKDYAFVH 390
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPG 195
F++R EA +AM ELNG + G +E+ LAKP K K++++ R +++M M G G G
Sbjct: 391 FKNRDEARSAMTELNGFNLEGQCIEICLAKPQDKKLKEKKLERQMQKQM--AMSGGFGFG 448
Query: 196 PSGA--HAPLLTGPP 208
G P GPP
Sbjct: 449 KQGMMPGMPRFPGPP 463
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 82/132 (62%), Gaps = 11/132 (8%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AMN LNG + GS LEV+LAKP + + + R + +G
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP---------VDKEQYSRYQKAAKG 333
Query: 191 RGGPGPSGAHAP 202
GG + A P
Sbjct: 334 GGGSAEAVAQQP 345
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 82/132 (62%), Gaps = 11/132 (8%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AMN LNG + GS LEV+LAKP + + + R + +G
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP---------VDKEQYSRYQKAAKG 333
Query: 191 RGGPGPSGAHAP 202
GG + A P
Sbjct: 334 GGGSAEAVAQQP 345
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL E+ +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTAEDTIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TM+ VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 209 GHAIAVDWAEPEVEVDEDTMATVKILYVRNLMLQTTEETIEKEFNSLKQGAVERVKKIRD 268
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AMN LNG+ V GS +EV+LAKP
Sbjct: 269 YAFVHFTQREDAIHAMNALNGKVVDGSPIEVTLAKP 304
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNSLNGTELEGSCLEVTLAKP 318
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 81/132 (61%), Gaps = 11/132 (8%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K +F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKRSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AMN LNG + GS LEV+LAKP + + + R + +G
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP---------VDKEQYSRYQKAAKG 333
Query: 191 RGGPGPSGAHAP 202
GG + A P
Sbjct: 334 GGGSAEAVAQQP 345
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 3/98 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIK 129
G +I VDWA+P+ + D ETM++VK LYVRNL + TEE L+E E G VERVK+I+
Sbjct: 236 GNEITVDWAEPERDVDEETMAQVKKLYVRNLMMHTTEEHLREVVEAISGTGTVERVKKIR 295
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167
DYAFVHF R++AI LNGQ + GS +EV LAKPP
Sbjct: 296 DYAFVHFSRREDAIRVQEALNGQDLDGSVVEVKLAKPP 333
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------Y 131
DW P E ++V L + TE++L FE+ GR+ ++ + D Y
Sbjct: 74 DWTGPPPPKGCE-------VFVGKLPRDVTEQELVPVFERVGRIYEMRMMMDFNGSNRGY 126
Query: 132 AFVHFEDRQEAITAMNELNG 151
AFV F D+++A A +LNG
Sbjct: 127 AFVTFCDKEQAKRACQQLNG 146
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNSLNGTELEGSCLEVTLAKP 318
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL +EE +++ F Q+ G VERVK+I+D
Sbjct: 242 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMMETSEETIRKVFSQWNPGCVERVKKIRD 301
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R +A+ AMN+LNG V GS +EV+LAKP
Sbjct: 302 YAFVHFNSRDDAVLAMNQLNGTEVEGSCIEVTLAKP 337
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TM+ VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMATVKILYVRNLMLPTTEETIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AMN LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSQREDAINAMNALNGKVIDGSPIEVTLAKP 303
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TM+ VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMATVKILYVRNLMLPTTEETIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AMN LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSQREDAINAMNALNGKVIDGSPIEVTLAKP 303
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 228 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEEAIKKSFGQFNPGCVERVKKIRD 287
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 288 YAFVHFVSREDAVRAMNSLNGTELEGSCLEVTLAKP 323
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R +A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSRDDAVHAMNSLNGTELEGSCLEVTLAKP 318
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|426231613|ref|XP_004009833.1| PREDICTED: RNA-binding protein 47 [Ovis aries]
Length = 546
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 178 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 237
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 238 YAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKP 273
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVH 135
+ VDWA+P+ E D ETM+ VK+LYVRNL TE +L +AF + VERVK+I+DYAFVH
Sbjct: 188 VAVDWAEPELEVDEETMATVKILYVRNLMLTTTEAQLNKAFSHHAPVERVKKIRDYAFVH 247
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
F R A+TAM +NG + + +EV+LAKP KE +RN R
Sbjct: 248 FNSRSGALTAMKAMNGSVLDDAVIEVTLAKP----VDKEAQMRNPPRH 291
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++ D ETM +VKVLYVRNL TE+K+K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKIVDEETMQRVKVLYVRNLMISTTEDKIKAEFNKFKPGVVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKP 308
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFASREDAVQAMNNLNGTELEGSCLEVTLAKP 318
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 90/163 (55%), Gaps = 32/163 (19%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLTTAEETIEKEFSSVKPGSVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R +A+ AMN LNG+ + GS +EV+LAKP KE +R +G
Sbjct: 268 YAFVHFRNRADAVDAMNVLNGKIIDGSPIEVTLAKP----VDKESYVR--------YTRG 315
Query: 191 RGGPG----------------PSGAH--APLLTGPPMPRGSVP 215
GG G P+ A+ AP+ PP ++P
Sbjct: 316 TGGRGAAIQGEYTYTIGHVYDPTTAYLGAPVFYAPPAYTAAIP 358
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 222 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 281
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 282 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 317
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 228 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEEAIKKSFGQFNPGCVERVKKIRD 287
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 288 YAFVHFVSREDAVRAMNSLNGTELEGSCLEVTLAKP 323
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL +EE +++ F Q+ G VERVK+I+D
Sbjct: 235 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMMETSEETIRKVFSQWNPGCVERVKKIRD 294
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R +A+ AMN LNG V GS +EV+LAKP
Sbjct: 295 YAFVHFNSRDDAVLAMNHLNGTEVEGSCIEVTLAKP 330
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R +A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSRDDAVHAMNSLNGTELEGSCLEVTLAKP 318
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 224 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 283
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 284 YAFVHFASREDAVRAMNSLNGTELEGSCLEVTLAKP 319
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFASREDAVLAMNNLNGTELEGSCLEVTLAKP 318
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFASREDAVQAMNNLNGTELEGSCLEVTLAKP 318
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 180 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 239
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 240 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 275
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+D
Sbjct: 366 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRD 425
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 426 YAFVHFASREDAVHAMNHLNGTELEGSCLEVTLAKP 461
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
D++VDWA+ QEEPD ETM+KVKVLYVRNL + TEE+LKE F YG V+R K+I+DYAF
Sbjct: 448 SDLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDRAKKIRDYAF 507
Query: 134 VHFEDRQEAITAMNELN 150
+HF +R+ AI AM LN
Sbjct: 508 IHFMEREPAIKAMEALN 524
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 225 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 284
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 285 YAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKP 320
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFASREDAVHAMNSLNGTELEGSCLEVTLAKP 318
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 224 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 283
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 284 YAFVHFASREDAVRAMNSLNGTELEGSCLEVTLAKP 319
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 222 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 281
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 282 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 317
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 116 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 175
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 176 YAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKP 211
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 68/94 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G I VDWA+P+ E D E M +VK++YVRNL TEE L+E F+ RVERVK+I+DYA
Sbjct: 200 GHKIAVDWAEPEIEVDEEIMDQVKIVYVRNLLLSTTEESLREIFQSIARVERVKKIRDYA 259
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
F+HF +++A A+ NGQ + GST+EV+LAKP
Sbjct: 260 FIHFTSKEDAHMAITLKNGQIIDGSTVEVTLAKP 293
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TM+ VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 209 GHAIAVDWAEPEVEVDEDTMATVKILYVRNLMLQTTEETIEKEFNSLKPGAVERVKKIRD 268
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AM LNG+ V GS +EV+LAKP
Sbjct: 269 YAFVHFTQREDAINAMKALNGKVVDGSPIEVTLAKP 304
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 185 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 244
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 245 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 280
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TM+ VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 209 GHAIAVDWAEPEVEVDEDTMATVKILYVRNLMLQTTEETIEKEFNSLKPGAVERVKKIRD 268
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AM LNG+ V GS +EV+LAKP
Sbjct: 269 YAFVHFTQREDAINAMKALNGKVVDGSPIEVTLAKP 304
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 185 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 244
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 245 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 280
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 185 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 244
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 245 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 280
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 185 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 244
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 245 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 280
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 75 DIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFV 134
+++V+WA+ Q++ D ETMSKVK+LY+R L +EE+L+ F QYG VERVKRIKDYAFV
Sbjct: 373 ELVVEWAETQDDVDKETMSKVKILYLRPLKDSVSEEELRVRFSQYGTVERVKRIKDYAFV 432
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKE 174
HF +R++A A+ + GQ G EVS AK P+D+K+K+
Sbjct: 433 HFAEREQAEKAIEAMKGQEFDGVPCEVSFAK-PTDRKRKD 471
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F+ G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEETIEKEFDSIKPGSVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFNNREDAVNAMKALNGKVLDGSPIEVTLAKP 303
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 259 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 318
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 319 YAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKP 354
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>gi|47230069|emb|CAG10483.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 31/144 (21%)
Query: 73 GCDIIVDWADPQEEPDTETMSKV-------------------------------KVLYVR 101
G + V+WADP E+PD E M+KV KVL+VR
Sbjct: 367 GNLVTVEWADPLEDPDPEVMAKVRVGPRAPIVCVLARIFFFFLPTLSLSGPLQVKVLFVR 426
Query: 102 NLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEV 161
NL TEE L++AF Q+G++ERVK++KDYAF+HFE+R A+ A+ +LNG+ + G +E+
Sbjct: 427 NLASSVTEELLEKAFSQFGKLERVKKLKDYAFIHFEERDGAVKALADLNGKDLEGEHIEI 486
Query: 162 SLAKPPSDKKKKEEILRNRERRMM 185
AKPP K+K+ + R + M
Sbjct: 487 VFAKPPDQKRKERKAQRQAAKTHM 510
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE L++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEETLEKEFNSIKPGSVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R +A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFNNRDDAVNAMKALNGKVLDGSPIEVTLAKP 303
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE L++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEETLEKEFNSIKPGSVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R +A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFNNRDDAVNAMKALNGKVLDGSPIEVTLAKP 303
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 260 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 319
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 320 YAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKP 355
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM LNG+ + GS +EV+LAK P DK R R MMQG
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGARNT-MMQG 325
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>gi|7020334|dbj|BAA91086.1| unnamed protein product [Homo sapiens]
Length = 431
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 53 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM LNG+ + GS +EV+LAK P DK R R M+QG
Sbjct: 113 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGGRGT-MLQG 170
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKP 318
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+D
Sbjct: 214 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKIFGQFNPGCVERVKKIRD 273
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 274 YAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKP 309
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 124 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 183
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM LNG+ + GS +EV+LAK P DK R R M+QG
Sbjct: 184 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGGR-GTMLQG 241
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFNKREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 209 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERVKKIRD 268
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 269 YAFVHFNKREDAVDAMKALNGKVLDGSPIEVTLAKP 304
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFNKREDAVHAMKALNGKVLDGSPIEVTLAKP 303
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFNKREDAVHAMKALNGKVLDGSPIEVTLAKP 303
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 201 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 260
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 261 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 296
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 216 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 275
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 276 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 311
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNRKDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 221 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 280
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 281 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 316
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNRKDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 216 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 275
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 276 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 311
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 216 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 275
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 276 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 311
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL +EE +++ F Q+ G VERVK+I+D
Sbjct: 237 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMMETSEEAIRQIFSQFNPGCVERVKKIRD 296
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R +A+ AM+ LNG V GS +EV+LAKP
Sbjct: 297 YAFVHFTSRDDAVLAMDNLNGTEVEGSCIEVTLAKP 332
>gi|148709768|gb|EDL41714.1| mCG1979, isoform CRA_b [Mus musculus]
Length = 767
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 380 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 439
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM LNG+ + GS +EV+LAK P DK R R M+QG
Sbjct: 440 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGGRNT-MLQG 497
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFNNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSAVKILYVRNLMLSTTEETIEKEFSSIKPGSVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ V GS ++V+LAKP
Sbjct: 268 YAFVHFNNREDAVEAMKVLNGKMVDGSPIKVTLAKP 303
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 219 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 278
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AM+ LNG + GS LEV+LAKP
Sbjct: 279 YAFVHFTSREDAVHAMSNLNGTELEGSCLEVTLAKP 314
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R +AI AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNRDDAIEAMKALNGKVLDGSPIEVTLAKP 303
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVKAMKALNGKVLDGSPIEVTLAKP 303
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R+ A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFNKREHAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 182 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 241
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 242 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 277
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 182 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 241
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 242 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 277
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 182 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 241
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 242 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 277
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R +AI AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNRDDAIEAMKALNGKVLDGSPIEVTLAKP 303
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 200 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 259
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 260 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 295
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 200 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 259
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 260 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 295
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM LNG+ + GS +EV+LAK P DK R R M+QG
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGGRNT-MLQG 325
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM LNG+ + GS +EV+LAK P DK R R M+QG
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGGRNT-MLQG 325
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM LNG+ + GS +EV+LAK P DK R R M+QG
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGGRNT-MLQG 325
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEIIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 200 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 259
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 260 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 295
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 191 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 250
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 251 YAFVHFSNRKDAVEAMKALNGKVLDGSPIEVTLAKP 286
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 211 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 270
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 271 YAFVHFSNREDAVEAMKALNGKMLDGSPIEVTLAKP 306
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 200 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 259
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 260 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 295
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMMETTEDTIKKIFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AM +LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFASREDAVHAMKKLNGTDLEGSCLEVTLAKP 318
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEVIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE ++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEETIEREFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFNNREDAVGAMKALNGKVLDGSPIEVTLAKP 303
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKMLDGSPIEVTLAKP 303
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKMLDGSPIEVTLAKP 303
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I V WA P++E D ETM KVKVLYVRNL TEE +K F +Y G VERVK+I+D
Sbjct: 213 GHTIKVAWASPEKEVDEETMQKVKVLYVRNLMMSTTEETIKAEFNRYKPGVVERVKKIRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R AI AM+ +NG+ + G+ +EV+LAKP
Sbjct: 273 YAFVHFFRRDYAIAAMSVMNGRLIDGARIEVTLAKP 308
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSSREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAMEAMKALNGKVLDGSPIEVTLAKP 303
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 193 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 252
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 253 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 288
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL EE +++ F Q+ G VERVK+I+D
Sbjct: 235 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMMETNEETIRQIFSQWNPGCVERVKKIRD 294
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R +A+ AM+ LNG + GS +EV+LAKP
Sbjct: 295 YAFVHFTSRDDAVLAMDNLNGTEIEGSCIEVTLAKP 330
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+D
Sbjct: 225 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRD 284
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LN + GS LEV+LAKP
Sbjct: 285 YAFVHFTSREDAVQAMNNLNNTELEGSCLEVTLAKP 320
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 289 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 348
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 349 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 398
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 289 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 348
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 349 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 398
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL +EE L++ F Q+ G VERVK+I+D
Sbjct: 234 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETSEEILRQTFGQFNPGCVERVKKIRD 293
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R +A+ AM+ LNG + GS +EV+LAKP
Sbjct: 294 YAFVHFASRDDAVVAMDNLNGTEIEGSRIEVTLAKP 329
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSLVKILYVRNLMLSTSEEMIEKEFNNVKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AM LNG+ + GS +EV+LAK P DK R R M+QG
Sbjct: 268 YAFVHFSHREDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGGR-ATMLQG 325
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P++E D + M VKVLYVRNL TEE +++ F G VERVK+I+D
Sbjct: 227 GHQIAVDWAEPEQEVDEDIMKTVKVLYVRNLMLNTTEETIEKEFNSLKEGSVERVKKIRD 286
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ A+N +NG V GS +EV LAKP
Sbjct: 287 YAFVHFVTREDALYALNAMNGHNVDGSVVEVVLAKP 322
>gi|324505959|gb|ADY42552.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324526563|gb|ADY48690.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 248
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 66/91 (72%), Gaps = 3/91 (3%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151
MSKVKVLYVRNL + TEE+LKE F +G VER K+I+DYAF+HF++R+ A+ AM LNG
Sbjct: 1 MSKVKVLYVRNLKEAVTEEQLKEMFAAHGEVERAKKIRDYAFIHFKEREPALKAMEALNG 60
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
+ G +E+SLAKP DKKK +R R R
Sbjct: 61 TVLEGIAIEISLAKPQGDKKK---TVRGRGR 88
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM L+G+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALHGKVLDGSPIEVTLAKP 303
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM L+G+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALHGKVLDGSPIEVTLAKP 303
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 77/119 (64%), Gaps = 13/119 (10%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRIKDYAFVH 135
VDWA P++E D ETM +VKVLYVRNL TE+ +K F ++ VERVK+++DYAFVH
Sbjct: 218 VDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTIKAEFNKFKPRVVERVKKLRDYAFVH 277
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
F +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G P
Sbjct: 278 FYNREDAVAAMSVMNGKCIDGASIEVTLAKPV-----------NKESTWKQHLNGHVSP 325
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 60/120 (50%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM LNG+ + GS +EV+LAK P DK R R MMQG
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGAR-NTMMQG 325
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 77/119 (64%), Gaps = 13/119 (10%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRIKDYAFVH 135
VDWA P++E D ETM +VKVLYVRNL TE+ +K F ++ VERVK+++DYAFVH
Sbjct: 218 VDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTIKAEFNKFKPRVVERVKKLRDYAFVH 277
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
F +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G P
Sbjct: 278 FYNREDAVAAMSIMNGKCIDGASIEVTLAKPV-----------NKESTWKQHLNGHVSP 325
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
Query: 65 TGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER 124
TGK L G I VDWA+P++E D E M +VKVLY RNL TEE +++AF ++G VER
Sbjct: 202 TGKIQLW-GHQIAVDWAEPEQEVDQEIMDQVKVLYARNLLLSTTEETIEQAFSKFGEVER 260
Query: 125 VKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEIL 177
VK+IKDY F+HF +++A AM +N + G+ +EV+LAK P DK + +L
Sbjct: 261 VKKIKDYCFIHFRTKEQARDAMEAMNETELDGNEIEVTLAK-PVDKDHRSPLL 312
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 71/101 (70%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
AM E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQM 392
>gi|324510250|gb|ADY44287.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 272
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 62/81 (76%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151
M+KVKVLYVRNL + TEE+LKE F +G V+ VK+IKDYAF+HF +R+ A+ AM LNG
Sbjct: 1 MAKVKVLYVRNLKEAVTEEQLKEMFSAHGEVDHVKKIKDYAFIHFNEREPAVKAMEALNG 60
Query: 152 QTVAGSTLEVSLAKPPSDKKK 172
+ G +E+SLAKP SDKKK
Sbjct: 61 TVLEGVPIEISLAKPQSDKKK 81
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 71/101 (70%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
AM E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQM 392
>gi|159164094|pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 66/87 (75%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151
M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+ AM E+NG
Sbjct: 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 67
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILR 178
+ + G +E+ AKPP K+K+ + R
Sbjct: 68 KDLEGENIEIVFAKPPDQKRKERKAQR 94
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 67/96 (69%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+++ D E M +VKVLYVRNL TE+ L+ F Q+ G VERVK+I+D
Sbjct: 264 GHPIAVDWAEPEQDVDDEIMGQVKVLYVRNLMLDTTEDTLQNVFSQFKPGSVERVKKIRD 323
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R+ I AM ++NG + + +EV+LAKP
Sbjct: 324 YAFVHFSTREACIEAMEKINGTHIDQAEVEVTLAKP 359
>gi|326916227|ref|XP_003204411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Meleagris gallopavo]
Length = 448
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK 129
L+RG + +E E + VKVL+VRNL TEE L++AF Q+G++ERVK++K
Sbjct: 201 LNRGYAFVTFCT---KEAAQEAVKLVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK 257
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
DYAF+HF++R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 258 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 317
Query: 190 GRGGP 194
GP
Sbjct: 318 YYYGP 322
>gi|71894995|ref|NP_001026254.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Gallus
gallus]
gi|53129801|emb|CAG31416.1| hypothetical protein RCJMB04_6c17 [Gallus gallus]
Length = 448
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK 129
L+RG + +E E + VKVL+VRNL TEE L++AF Q+G++ERVK++K
Sbjct: 201 LNRGYAFVTFCT---KEAAQEAVKLVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK 257
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
DYAF+HF++R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M
Sbjct: 258 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 317
Query: 190 GRGGP 194
GP
Sbjct: 318 YYYGP 322
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 72/110 (65%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++ ++L+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 292 EYEDHKTAAQARLLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 352 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 401
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL +E+ +K+ F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETSEDTIKKIFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ +M +LNG + GS +EV+LAKP
Sbjct: 283 YAFVHFSSREDAVQSMRKLNGTELEGSCIEVTLAKP 318
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 83/141 (58%), Gaps = 17/141 (12%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNL----TQYCTEEKLKEAFEQYGRVERVKRI 128
G I VDWA+P++E D + MSKVK+LYVRNL T+ E +A + G VERVK++
Sbjct: 210 GHQIAVDWAEPEQEVDEDVMSKVKILYVRNLMLTTTEEFLETTFNQACGKEGAVERVKKL 269
Query: 129 KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMM 188
+DYAFVHF++R +A+ AM +NGQ + GS +EV+LAK P DK R
Sbjct: 270 RDYAFVHFKERDDALLAMEVINGQLIEGSMVEVTLAK-PVDKNSYVRYTRG--------- 319
Query: 189 QGRGGPGPSGAHAPLLTGPPM 209
GG G H+PL + P+
Sbjct: 320 ---GGRGAMPQHSPLPSSQPL 337
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+++ + E M +V+VLYVRNL TEE L+ F ++ G VERVK++ D
Sbjct: 225 GHPIQVDWAEPEKDMEEEAMQRVRVLYVRNLMLDTTEETLRREFSRFKPGSVERVKKLTD 284
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
YAFVHF R EA+ + +NG + G+T+EVSLAKP +K+
Sbjct: 285 YAFVHFRSRSEALATLAVMNGVQIDGTTVEVSLAKPTGNKE 325
>gi|391331494|ref|XP_003740180.1| PREDICTED: probable RNA-binding protein 46-like [Metaseiulus
occidentalis]
Length = 357
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRIKDY 131
GC+++VDWADP++EPD E M VKVLY++NL+ T+ L+ AF + G +VERVK I+D+
Sbjct: 225 GCEVVVDWADPEQEPDEEIMKSVKVLYIKNLSPRVTDADLRRAFAERGLQVERVKVIRDF 284
Query: 132 AFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170
AFVHF R A AM T+ L+VS AKPP +K
Sbjct: 285 AFVHFFTRSLAEKAMKVCQNLTLDDLPLQVSWAKPPINK 323
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIK 129
G I VDWA+P+ E D + M+ VK+LYVRNL TEE+L+ F G +ERVK+I+
Sbjct: 254 GHPIAVDWAEPEVEVDDDIMATVKILYVRNLMLNTTEEQLEAEFSALVPSGSIERVKKIR 313
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
DY FVHF R+ AI + +LNG+ + GS +EV+LAKP
Sbjct: 314 DYGFVHFNTRENAIKCLKQLNGKILDGSPMEVTLAKP 350
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+++ D E M +V+VLYVRNL +EE L++ F ++ G VERVK++ D
Sbjct: 229 GHSIQVDWAEPEKDVDEEVMQRVRVLYVRNLMLETSEETLRQEFSRFKPGCVERVKKLSD 288
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAF+H+ R +A+TA++ +NG + G+ +EV+LAKP
Sbjct: 289 YAFIHYRSRSDALTALSLMNGAHIDGAAVEVTLAKP 324
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 73/111 (65%), Gaps = 2/111 (1%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQ--YGRVERVK 126
L+ G + +DWA+P+++ D++ M VK+LYVRNL E L++ FE +ERVK
Sbjct: 213 LILWGKTVCIDWAEPEQQVDSDIMENVKILYVRNLMLNTDEITLRKYFEMGDIHCIERVK 272
Query: 127 RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEIL 177
+I+D+AFVHF R++A+ A+N+LN + GST+EV LAKPP + +L
Sbjct: 273 KIRDFAFVHFTTREKALNALNKLNHTKLDGSTIEVCLAKPPEQLPRLSRML 323
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIK 129
G I VDWA+P+ E + M VK+LYVRNL + +E+ L+ AF + G +ERVK+I+
Sbjct: 227 GHQIAVDWAEPEIEVEESVMETVKILYVRNLMLHTSEDTLEAAFAKVTGKGTIERVKKIR 286
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
DYAFVHF R A+ AM ELN + G+ +EV LAK P D+ R ER+++Q Q
Sbjct: 287 DYAFVHFNTRDNALKAMKELNNGMIDGALVEVVLAK-PVDRDSYVRHSRASERKVIQAPQ 345
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 68/94 (72%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L+++F +YG +ERVK++KDYAF+HFE+R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANSVTEEILEKSFSEYGNLERVKKLKDYAFIHFEERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
A+ E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 352 ALEEMNGKELEGEPIEIVFAKPPDQKRKERKAQR 385
>gi|159164162|pdb|2DK2|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein R (Hnrnp R)
Length = 97
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMN 147
D E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AM+
Sbjct: 8 DPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMD 67
Query: 148 ELNGQTVAGSTLEVSLAKPPSDKKK 172
E+NG+ + G +E+ LAKPP DKK+
Sbjct: 68 EMNGKEIEGEEIEIVLAKPP-DKKR 91
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 69/94 (73%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D +T ++VKVL+VRNL TEE L+++F ++G++ERVK++KDYAF+HFE+R A+
Sbjct: 292 EYEDHKTAAQVKVLFVRNLANGVTEELLEKSFSEFGKLERVKKLKDYAFIHFEERDGAVK 351
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
A+ E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 352 ALEEMNGKELEGEPIEIVFAKPPDQKRKERKAQR 385
>gi|256078322|ref|XP_002575445.1| apobec-1 complementation factor-related [Schistosoma mansoni]
gi|350644243|emb|CCD61005.1| apobec-1 complementation factor-related [Schistosoma mansoni]
Length = 771
Score = 99.0 bits (245), Expect = 2e-18, Method: Composition-based stats.
Identities = 68/184 (36%), Positives = 97/184 (52%), Gaps = 30/184 (16%)
Query: 8 KNQKPIVIFVNVRKFTMAESSREAEEKPSSE--RTPDYTK------------------LL 47
++ K V +N+ KF E R++EE+ SE R D K +
Sbjct: 155 EDTKRAVQELNIMKF---EKERQSEEEILSEMKRVTDGVKDVISYPSVTDKTKNRGFAFI 211
Query: 48 EYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYC 107
EYG K A + HL G I VDWA+P+ E + + MSKVK+LYVRNL
Sbjct: 212 EYGSHKAAAMARRKLLPGHIHLW--GHQIAVDWAEPEREVNEDIMSKVKILYVRNLMLST 269
Query: 108 TEEKLKEAFEQYG-----RVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162
TEE L+++F + VERVK+I DYAF+HF +R++A+ ++ LN + GS +EV+
Sbjct: 270 TEESLRDSFIKAAGGDPNSVERVKKISDYAFIHFREREQALQCLHTLNDTYIDGSKIEVT 329
Query: 163 LAKP 166
AKP
Sbjct: 330 WAKP 333
>gi|47225126|emb|CAF98753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 583
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 24/166 (14%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA P+++ + E M +V+VLYVRNL +EE L +AF + G VERVK+ D
Sbjct: 266 GQSIQVDWAQPEKDVEEEVMQRVRVLYVRNLMLNTSEETLFKAFSHFKPGSVERVKKFTD 325
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM----- 185
YAFVH+ R++A+ A++ +NG + G+ +EV LAKP K+ R+ R +
Sbjct: 326 YAFVHYYCREDALAALDPMNGVLIDGAAVEVMLAKPAISKEDSSGSRRHGSRGYLKSNNT 385
Query: 186 --QMMQGR----GGPGPS-----------GAHAPLLTGPPMPRGSV 214
Q + + GGP + G PL G P+ SV
Sbjct: 386 ADQALDNKDLNEGGPTHTNYCLVLPGDRDGHFFPLFPGTPLSHTSV 431
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I+VDWA+P+++ D + M VK+LYVRNL + TEE + + F + G VERVK+++D
Sbjct: 210 GHQIMVDWAEPEQDVDEDVMRGVKILYVRNLMLHTTEETIAKEFNAFKEGSVERVKKLRD 269
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
+AF+HF R++A+ AMN ++ + G+ +EV LAKP
Sbjct: 270 FAFIHFFTREDALNAMNAMDDPLLDGAKIEVVLAKP 305
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 68/97 (70%), Gaps = 3/97 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G I VDWA+P+++ D + M +VKVLY+RNL TEE ++ F+++ VERVK+IKDY
Sbjct: 240 GHPIAVDWAEPEQDIDEDIMDQVKVLYIRNLQLNTTEETIENLFKKFAEVERVKKIKDYC 299
Query: 133 FVHFEDRQEAITAMNEL---NGQTVAGSTLEVSLAKP 166
FVHF R+ A A+ + NG+++ G+ +EV+LAKP
Sbjct: 300 FVHFVTREGARLALESVKANNGESIDGAKIEVTLAKP 336
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I+VDWA+P+++ D + M VK+LYVRNL + TEE + + F + G VERVK+++D
Sbjct: 210 GHQIMVDWAEPEQDVDEDVMRGVKILYVRNLMLHTTEETIAKEFNAFKEGSVERVKKLRD 269
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
+AF+HF R++A+ AMN ++ + G+ +EV LAKP
Sbjct: 270 FAFIHFFTREDALNAMNAMDDPLLDGAKIEVVLAKP 305
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%), Gaps = 2/112 (1%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+++ + E M +V+V+YVRNL TEE L + F + G VERVK++ D
Sbjct: 228 GQSIQVDWAEPEKDVEEEVMQRVRVIYVRNLMLSTTEETLFQEFSHFKPGSVERVKKLTD 287
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
YAFVH+ R++A+ A+ +NG + G+T+EV LAKP + K+ R+ R
Sbjct: 288 YAFVHYYCREDALAALAIMNGVQIDGATIEVMLAKPATIKEDSNGSRRHGNR 339
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I+VDWA+P+++ D + M VK+LYVRNL + TEE + + F + G VERVK+++D
Sbjct: 210 GHQIMVDWAEPEQDVDEDVMRGVKILYVRNLMLHTTEETIAKEFNAFKEGSVERVKKLRD 269
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
+AF+HF R++A+ AMN ++ + G+ +EV LAKP
Sbjct: 270 FAFIHFFTREDALNAMNAMDDPLLDGAKIEVVLAKP 305
>gi|313227332|emb|CBY22478.1| unnamed protein product [Oikopleura dioica]
Length = 248
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 75/123 (60%), Gaps = 7/123 (5%)
Query: 67 KHLLSRGCDII------VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG 120
K+LL+R + VDWADP+ PD MS VK LYV+ ++ TEE++K FE YG
Sbjct: 34 KNLLNRSLALFGRYYQNVDWADPENTPDDNVMSTVKNLYVKGWSEARTEEEIKALFEPYG 93
Query: 121 RVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS-TLEVSLAKPPSDKKKKEEILRN 179
VE+VK+I +++FVHF +R A+ A+ +NG+ ++VSLAKP K +++ R
Sbjct: 94 VVEKVKKINNFSFVHFVERDSALKAIEAMNGKNFGNDEVIDVSLAKPNDKNLKAKKMQRM 153
Query: 180 RER 182
+R
Sbjct: 154 NQR 156
>gi|426221982|ref|XP_004005184.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Ovis aries]
Length = 598
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 72/98 (73%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
E D ++ ++VKVL+VRNL TEE L+++F ++G++ERVK++KDYAFVHFEDR A+
Sbjct: 295 EYEDHKSAAQVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVK 354
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 355 AMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 392
>gi|313216719|emb|CBY37974.1| unnamed protein product [Oikopleura dioica]
Length = 580
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 78/127 (61%), Gaps = 8/127 (6%)
Query: 67 KHLLSRGCDII------VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG 120
K+LL+R + VDWADP+ PD MS VK LYV+ ++ TEE++K FE YG
Sbjct: 366 KNLLNRSLALFGRYYQNVDWADPENTPDDNVMSTVKNLYVKGWSEARTEEEIKALFEPYG 425
Query: 121 RVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS-TLEVSLAKPPSDKKKKEEILRN 179
VE+VK+I +++FVHF +R A+ A+ +NG+ ++VSLAK P+DK K + ++
Sbjct: 426 VVEKVKKINNFSFVHFVERDSALKAIEAMNGKNFGNDEVIDVSLAK-PNDKNLKAKKMQR 484
Query: 180 RERRMMQ 186
+R Q
Sbjct: 485 MNQRNQQ 491
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKD 130
G I VDWA+P+ E D E M KVKVLYVRNL TE+ +K+AFE + V RVK+I+D
Sbjct: 209 GHQIAVDWAEPEPEVDEEVMRKVKVLYVRNLMVTTTEDDIKQAFEVGEEETVTRVKKIRD 268
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVH++ R++AI AM +NG T+ G+ LEV+ AKP
Sbjct: 269 YAFVHYKTREDAIAAMTAMNGSTLEGAKLEVTFAKP 304
>gi|322800625|gb|EFZ21592.1| hypothetical protein SINV_05996 [Solenopsis invicta]
Length = 91
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 65/94 (69%), Gaps = 11/94 (11%)
Query: 143 ITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAP 202
AMNELNG+ + GS +EVSLAKPPSDKKKKEE+LR RERRMMQM+QGRGG PS P
Sbjct: 3 FKAMNELNGKEMGGSHIEVSLAKPPSDKKKKEEMLRARERRMMQMLQGRGGGSPS---HP 59
Query: 203 LLTGPPMP-RGSVPLQ-----AALSSTRMGRGDY 230
+ G PMP RG P Q A +MGRGDY
Sbjct: 60 SMMGGPMPVRG--PTQGPRGTGAGMRGQMGRGDY 91
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 64/93 (68%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V WA+ +E PD MSKVK +YVRN+ +E +LK F +YG++E+V++I+DY FV+F
Sbjct: 272 VTWAEAREIPDYAVMSKVKSIYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFA 331
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170
R+ A+ A++ +NG + G LEVSLA P S +
Sbjct: 332 KRESAVQAIDGINGAYIDGCKLEVSLAIPQSSR 364
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQT 153
YAFVHF +R++A+ AM LNG+T
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKT 290
>gi|159163837|pdb|2CPD|A Chain A, Solution Structure Of The Rna Recognition Motif Of Human
Apobec-1 Complementation Factor, Acf
Length = 99
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITA 145
D +TMS VK+LYVRNL +EE +++ F G VERVK+I+DYAFVHF +R++A+ A
Sbjct: 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEA 67
Query: 146 MNELNGQTVAGSTLEVSLAKP 166
M LNG+ + GS +EV+LAKP
Sbjct: 68 MKALNGKVLDGSPIEVTLAKP 88
>gi|444729720|gb|ELW70127.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 224
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151
M+KVKVL VRNL TE LK+ F Q G++ERVK++KDYAF+HF++R A+ AM E NG
Sbjct: 1 MAKVKVLSVRNLANMVTEGILKKTFSQLGKLERVKKLKDYAFIHFDERDGAVKAMGERNG 60
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILR 178
+ + G +++ AKPP K+K+ + R
Sbjct: 61 KDLEGENIDIVFAKPPDQKRKERKTQR 87
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 46 LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMS-KVKVLYVRNLT 104
LEY D + A + +GK ++ G + V+WA+P E DT+ M+ + KVL+VR L
Sbjct: 295 FLEY-EDHKSAAQARRCLMSGK-VMVWGNPVTVEWANPVTERDTDVMANQAKVLFVRKLA 352
Query: 105 QYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
TEE L + F +G++ERV ++KDYAFVHFEDR A+ AM ++NG+ + G +E+ +A
Sbjct: 353 TSVTEELLVKTFSAFGKLERVYKLKDYAFVHFEDRDAAVKAMVDMNGKELGGEAIEIRIA 412
Query: 165 KPPSDKKKKEEILRN 179
K +K + + RN
Sbjct: 413 KKKKARKTQRQTTRN 427
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 27/172 (15%)
Query: 63 FKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRV 122
FK G C++ V+WADP +EPD M++V+VLY+RNL +EE++++ FE+YG +
Sbjct: 260 FKIG------NCNVTVNWADPIQEPDETIMNQVRVLYIRNLPDSKSEEQVRKLFEEYGVI 313
Query: 123 ERV--------KRIKDYAFVHFEDRQ--EAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
E+V ++ +D+ FVHF +R EA A + T G L +S AK P DKK+
Sbjct: 314 EKVIIPNNLPGQQRRDFGFVHFANRDEAEATLARHHDTPITYQGRPLSLSFAK-PIDKKQ 372
Query: 173 KEEILRNRERRMMQMMQGRGGPGPSGAH---APLLTGPPMPRG---SVPLQA 218
+ E+ R RR+ + + G H P L P +P+G S+P A
Sbjct: 373 RAEL---RVRRLQRTVSRHHTTGQQAHHLMSLPHLV-PTLPQGMNISIPSNA 420
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
++V + + TEE+L++ F G V++V+ +KD Y FV F ++ A+ +
Sbjct: 114 VFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVVQF 173
Query: 150 NGQTVAGSTLEVSLAK 165
N + G L V ++
Sbjct: 174 NNKEFKGKNLRVKFSE 189
>gi|322800626|gb|EFZ21593.1| hypothetical protein SINV_10038 [Solenopsis invicta]
Length = 69
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/50 (76%), Positives = 47/50 (94%)
Query: 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAI 143
+V+VLYVRNLTQ C+EEKLKE+FEQYG++ERVK+IKDYAF+HFEDR A+
Sbjct: 19 QVRVLYVRNLTQDCSEEKLKESFEQYGKIERVKKIKDYAFIHFEDRDNAV 68
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 7/95 (7%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-RIKDY 131
G I VDWA+P+ E D +TMS VK+LYVRNL +EE ++ F +K I DY
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEIIEREFNN------IKPEIWDY 261
Query: 132 AFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
AFVHF R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 262 AFVHFSKREDAVEAMKALNGKVLDGSPIEVTLAKP 296
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRIKD 130
G +I VDWA+P+ E + + MS+V VLYVRNL+ TE+ L+E F + V+++K ++D
Sbjct: 194 GKEIAVDWAEPENEIEEDVMSQVTVLYVRNLSLTTTEQVLRELFNRVSDDNVQKLKMMRD 253
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
+AF+HF R++A AM +N + G+T+E++ AKP
Sbjct: 254 FAFIHFSSREKAEKAMRNMNHTEINGTTIEITWAKP 289
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 8/102 (7%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
+ WADP+ PD MS+VKV+YVRNL TEE+L++ FE++G + +V + +
Sbjct: 282 ISWADPRSGPDVSAMSQVKVVYVRNLPDSVTEEQLQKLFERHGEIVKVVLPATKPGQAKR 341
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
D+ FVHF DR +A+ A+ + + G LE SLAKPP++K+
Sbjct: 342 DFGFVHFSDRAQALKAIEKTEVYELEGRILETSLAKPPAEKR 383
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Query: 52 DKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEK 111
D +A K F + + C + V+WADP +EPD + M V+VLYVRNL + E
Sbjct: 179 DYYLADKARKEFASPSFRIGSSC-VTVNWADPVQEPDEDVMKNVRVLYVRNLPEQRNSED 237
Query: 112 LKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITAMNELNGQ--TVAGSTLEV 161
LK+ FE++G +E+V ++ +D+ FVHFE R+ A A+ N Q T G L V
Sbjct: 238 LKKVFEEFGTIEKVIIPVNIPGQQRRDFGFVHFESREAAEEALVRHNNQPITYQGRDLIV 297
Query: 162 SLAKPPSDKKKKEEILRNRERRMMQMMQG 190
S AKP K++ E +R +R + + Q
Sbjct: 298 SFAKPMDKKQRAELRVRKLQRTVNRQNQN 326
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
++V +++ TE+ L+ F G V +++ +K+ YAF+ FED+ A+ ++
Sbjct: 49 VFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQMAVEKI 108
Query: 150 NGQTVAGSTLEVSLAK 165
+ + + G +L V ++
Sbjct: 109 SNKELKGKSLRVKYSE 124
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------ 126
G V WADP+ PD ++VK LYV+N+ + T E+LKE F+Q+G V +V
Sbjct: 257 GNSPTVSWADPKSMPDNSAAAQVKALYVKNIPENTTTEQLKELFQQHGEVTKVNMPPGKA 316
Query: 127 --RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK---EEILRNRE 181
+D+AF+H+ +R A+ A+ E + G LEV LAKP SDKK I +
Sbjct: 317 GSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDKKSDGAYSHISGSYP 376
Query: 182 RRMMQMMQGR---------GGPG-PSGAHAPLLTG-PPMPRGSVPLQAALSSTRMG 226
++ G GG G +G H P++ G PMP G + L R+G
Sbjct: 377 NHLLHGGYGGYGGNPYGSLGGYGVTAGFHQPMIYGRGPMPAGMQMVPMVLPDGRIG 432
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L++ EE L++ E G + ++ IKD YAF+ F+ ++ A A+ +L
Sbjct: 107 VFIGGLSRDVLEEDLRDMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDL 166
Query: 150 NGQTVAGSTLEVSLA 164
+G+ V G T+ SL+
Sbjct: 167 HGKEVKGKTIRCSLS 181
>gi|313212996|emb|CBY36886.1| unnamed protein product [Oikopleura dioica]
Length = 404
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 58/84 (69%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G I VDWA+P+E+ D + M +VKVLYVRNL +EE L+ F QYG+VERVK+I+DYA
Sbjct: 316 GNPIAVDWAEPEEDVDDDIMKEVKVLYVRNLLIETSEESLRAHFSQYGQVERVKKIRDYA 375
Query: 133 FVHFEDRQEAITAMNELNGQTVAG 156
FVHF +R+ A A+ Q + G
Sbjct: 376 FVHFVERESADAAVKAGCSQRLDG 399
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG--RVE 123
GK L G D+ VDWA+P+ + D +TMSKV VLYVRNL TE++L+E F G +V
Sbjct: 211 GKMKLWNGHDVAVDWAEPEPQVDEDTMSKVMVLYVRNLVLSTTEDELREVFSLNGSLKVS 270
Query: 124 RVKRIKDYAFVHFEDRQEAITAMNEL 149
+VK+I+D+AF+H+ R+EA TA+ +
Sbjct: 271 KVKKIRDFAFIHYRSREEATTALEAM 296
>gi|350645567|emb|CCD59692.1| apobec-1 complementation factor, putative [Schistosoma mansoni]
Length = 702
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQ----YGRVERVKRI 128
G I VDWA+P+ + D MSKV++LYVRNL + TE +K+ F Q VERVK+I
Sbjct: 217 GHQIAVDWAEPERQVDENIMSKVRILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKI 276
Query: 129 KDYAFVHFEDRQEAITAMNELN 150
+DYAFVHF +R +AITA+ +L+
Sbjct: 277 RDYAFVHFHNRIDAITALKQLD 298
>gi|256077575|ref|XP_002575078.1| apobec-1 complementation factor [Schistosoma mansoni]
Length = 847
Score = 89.0 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQ----YGRVERVKRI 128
G I VDWA+P+ + D MSKV++LYVRNL + TE +K+ F Q VERVK+I
Sbjct: 217 GHQIAVDWAEPERQVDENIMSKVRILYVRNLMLHTTENAVKDHFNQAIHSMDAVERVKKI 276
Query: 129 KDYAFVHFEDRQEAITAMNELN 150
+DYAFVHF +R +AITA+ +L+
Sbjct: 277 RDYAFVHFHNRIDAITALKQLD 298
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAF-----EQYGRVERVKRIKD 130
I VDWA+P+ E + + MSKVK+LYVRNL TE+ L+E F +ERVK+I D
Sbjct: 257 IAVDWAEPEREVNEDIMSKVKILYVRNLMLSTTEDGLREHFVCAAGGDPNCIERVKKISD 316
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAF+HF++R++A + LN + GS +EV+ AKP + N + + + G
Sbjct: 317 YAFIHFKEREQAARCLEALNDTLIDGSKIEVTWAKPVDKTEANARQQSNSGKLLNDLALG 376
Query: 191 RGGPGPSGAHAPLLTGP 207
+ A+ PLL P
Sbjct: 377 KD----IRANNPLLLDP 389
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 4/85 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKE----AFEQYGRVERVKRI 128
G I VDWA+P+ E D + MSKV++LYVRNL + TEE L++ A VERVK+I
Sbjct: 194 GHQIAVDWAEPEREVDEDIMSKVRILYVRNLMLHTTEEALRDHCNRAIGAVDAVERVKKI 253
Query: 129 KDYAFVHFEDRQEAITAMNELNGQT 153
+DYAFVHF DR +A A+ +L+G++
Sbjct: 254 RDYAFVHFRDRLQATAALRQLDGKS 278
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 30/177 (16%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ + S++KV+YVRNL + TEE+L+ FE +G + +V + +
Sbjct: 259 VSWADPRTGAEPAATSQIKVVYVRNLPEAVTEEQLRGLFEHHGEITKVVLPQSKPGQPKR 318
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
D+ FVHF DR +A+ A+ + + G LE SLAKPP +KK ++ L + ++ +Q
Sbjct: 319 DFGFVHFADRNDALKAIEKTEKYELEGRVLESSLAKPPVEKKGMDQPLAPQRLGILSQLQ 378
Query: 190 GR-----------------GGPGPSGAHAPLLTG---PPMPRGSVPLQAALSSTRMG 226
R GG G + + PL+ G PP VP+Q L R+G
Sbjct: 379 PRTAAYSYPVDIYNNIGTGGGYGQNRYNQPLIYGRGPPPAGMTMVPIQ--LPDGRLG 433
>gi|339262138|ref|XP_003367557.1| heterogeneous nuclear ribonucleo protein Q [Trichinella spiralis]
gi|316963436|gb|EFV49063.1| heterogeneous nuclear ribonucleo protein Q [Trichinella spiralis]
Length = 280
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV 154
VK+LY+R L +EE+L+ F QYG VERVKRIKDYAFVHF +R++A A+ + GQ
Sbjct: 3 VKILYLRPLKDSVSEEELRVRFSQYGTVERVKRIKDYAFVHFAEREQAEKAIEAMKGQEF 62
Query: 155 AGSTLEVSLAKPPSDKKKKE 174
G EVS AK P+D+K+K+
Sbjct: 63 DGVPCEVSFAK-PTDRKRKD 81
>gi|357603823|gb|EHJ63934.1| hypothetical protein KGM_17340 [Danaus plexippus]
Length = 438
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 62/94 (65%), Gaps = 2/94 (2%)
Query: 75 DIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYA 132
+++VDWA+P+ + D E M +VKVLYVRN T + +++ FE +VERVK+I DYA
Sbjct: 126 EVMVDWAEPEPDIDDEQMQRVKVLYVRNFEIRTTPDVIQKVFESTINHKVERVKKIYDYA 185
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
F+HF +R+ A A+ +L + GS +E+ AKP
Sbjct: 186 FIHFYEREHAELAIAKLQNADIDGSNIEIRWAKP 219
>gi|348580335|ref|XP_003475934.1| PREDICTED: probable RNA-binding protein 46-like [Cavia porcellus]
Length = 436
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 94 KVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151
+VKVL+VRNL TEE +K F ++ G VERVK+++DYAFVHF +R++A+ AM+ ++G
Sbjct: 198 RVKVLFVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVISG 257
Query: 152 QTVAGSTLEVSLAKPPS 168
+ + G+++EV+LAKP S
Sbjct: 258 KCIDGASIEVTLAKPHS 274
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------- 125
G + VDWA+P EP + MS+VK +YV NL E + F +YG++ER+
Sbjct: 419 GQKVRVDWAEPLNEPGEDVMSQVKSIYVANLPLEVDNELITTLFGEYGKIERIVLSKNLP 478
Query: 126 -KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
R KD+AFV++E+R A+ A++ +G V G TL+V+LAKP D K+
Sbjct: 479 TARRKDFAFVNYEERANALKAIDGKHGFEVQGRTLQVTLAKPVDDTTKQ 527
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 8/102 (7%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ D ++VK LYV+N+ + T E+LKE F+++G V +V + +
Sbjct: 258 VSWADPKSTSDHSAAAQVKALYVKNIPENTTTEQLKELFQRHGEVTKVVMPPAKSGQSKR 317
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
D+ F+HF +R A+ A+ + + G L+VSLAKP SDKK
Sbjct: 318 DFGFIHFAERSSALKAVKDTEKHEIDGQALDVSLAKPQSDKK 359
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 76 IIVDWADPQEEP-DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFV 134
I V+WA+ +EP D +KVK +Y N+ ++ TE+ L AF QYG +ER+K++ DYAF+
Sbjct: 191 INVEWAESSKEPKDHVVGNKVKEVYCGNIAEHITEDTLNTAFLQYGSIERIKKLHDYAFI 250
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
F R+ A+ A+ + G + G ++V LAK P K+K
Sbjct: 251 CFASRESALKAIEGVRGTVINGCKVDVQLAKGPVRKEK 288
>gi|388509780|gb|AFK42956.1| unknown [Lotus japonicus]
Length = 232
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV----KRI 128
G V WADP+ PD S+VK LYV+N+ + T ++LKE F ++G V +V +I
Sbjct: 10 GNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKI 69
Query: 129 ---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ F+HF +R A+ A+ E + G LEV LAKP ++K+
Sbjct: 70 GGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 115
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 28/148 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 674 VSWADPKNN-DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 732
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 733 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 778
Query: 191 RGGPGPSGAHAPLL-TGPPMPRG--SVP 215
P PS APLL + PP+ G SVP
Sbjct: 779 ---PLPSSNGAPLLPSYPPLGYGIMSVP 803
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 74/148 (50%), Gaps = 28/148 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 265 VSWADPKNN-DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 323
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 324 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 369
Query: 191 RGGPGPSGAHAPLLTG-PPMPRG--SVP 215
P PS APLL PP+ G SVP
Sbjct: 370 ---PLPSSNGAPLLPSYPPLGYGIMSVP 394
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKD----YAFVHFEDRQEAITAMNELNG 151
+YV ++ + E LK E G V V+ R KD YAFV+F + A+ A+ ELN
Sbjct: 113 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNN 172
Query: 152 QTVAGSTLEVS 162
+ G + VS
Sbjct: 173 AKLKGKRIRVS 183
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 30/158 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 265 VSWADPKNN-DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 323
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 324 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 369
Query: 191 RGGPGPSGAHAPLLTG-PPMPRG--SVP--LQAALSST 223
P PS APLL PP+ G SVP AA +ST
Sbjct: 370 ---PLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPAST 404
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKD----YAFVHFEDRQEAITAMNELNG 151
+YV ++ + E LK E G V V+ R KD YAFV+F + A+ A+ ELN
Sbjct: 113 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNN 172
Query: 152 QTVAGSTLEVS 162
+ G + VS
Sbjct: 173 AKLKGKRIRVS 183
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 30/158 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 265 VSWADPKNN-DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 323
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 324 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 369
Query: 191 RGGPGPSGAHAPLLTG-PPMPRG--SVP--LQAALSST 223
P PS APLL PP+ G SVP AA +ST
Sbjct: 370 ---PLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPAST 404
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKD----YAFVHFEDRQEAITAMNELNG 151
+YV ++ + E LK E G V V+ R KD YAFV+F + A+ A+ ELN
Sbjct: 113 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNN 172
Query: 152 QTVAGSTLEVS 162
+ G + VS
Sbjct: 173 AKLKGKRIRVS 183
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 30/158 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 278 VSWADPKNN-DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 336
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 337 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 382
Query: 191 RGGPGPSGAHAPLLTG-PPMPRG--SVP--LQAALSST 223
P PS APLL PP+ G SVP AA +ST
Sbjct: 383 ---PLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPAST 417
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKD----YAFVHFEDRQEAITAMNELNG 151
+YV ++ + E LK E G V V+ R KD YAFV+F + A+ A+ ELN
Sbjct: 126 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNN 185
Query: 152 QTVAGSTLEVS 162
+ G + VS
Sbjct: 186 AKLKGKRIRVS 196
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ PD S+VK LYV+N+ + T E+LKE F ++G V +V +D
Sbjct: 263 VTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRD 322
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ F+H+ +R A+ A+ + + G LEV LAKP +DKK
Sbjct: 323 FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKK 363
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + E+ L+E E G + V+ +KD YAFV F+ ++ A A+ E+
Sbjct: 108 VFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKTKEVAQKAIEEI 167
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G TL SL++
Sbjct: 168 HSKEFKGKTLRCSLSE 183
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ PD S+VK LYV+N+ + T E+LKE F ++G V +V +D
Sbjct: 263 VTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRD 322
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ F+H+ +R A+ A+ + + G LEV LAKP +DKK
Sbjct: 323 FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKK 363
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + E+ L+E E G + V+ +KD YAFV F+ ++ A A+ E+
Sbjct: 108 VFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGEHKGYAFVAFKAKEVAQKAIEEI 167
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G TL SL++
Sbjct: 168 HSKEFKGKTLRCSLSE 183
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 30/158 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 124 VSWADPKNN-DSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 182
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 183 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 228
Query: 191 RGGPGPSGAHAPLLTG-PPMPRG--SVP--LQAALSST 223
P PS APLL PP+ G SVP AA +ST
Sbjct: 229 ---PLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPAST 263
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 30/158 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 277 VSWADPKNN-DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 335
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 336 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 381
Query: 191 RGGPGPSGAHAPLLTG-PPMPRG--SVP--LQAALSST 223
P PS APLL PP+ G SVP AA +ST
Sbjct: 382 ---PLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPAST 416
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKD----YAFVHFEDRQEAITAMNELNG 151
+YV ++ + E LK E G V V+ R KD YAFV+F + A+ A+ ELN
Sbjct: 125 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNN 184
Query: 152 QTVAGSTLEVS 162
+ G + VS
Sbjct: 185 AKLKGKRIRVS 195
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ PD S+VK LYV+N+ + T E+LKE F ++G V +V +D
Sbjct: 263 VTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRD 322
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ F+H+ +R A+ A+ + + G LEV LAKP +DKK
Sbjct: 323 FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKK 363
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + E+ L+E E G + V+ +KD YAFV F+ ++ A A+ E+
Sbjct: 108 VFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEI 167
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G TL SL++
Sbjct: 168 HSKEFKGKTLRCSLSE 183
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 28/148 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 265 VSWADPKNN-DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 323
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 324 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 369
Query: 191 RGGPGPSGAHAPLL-TGPPMPRG--SVP 215
P PS APLL + PP+ G SVP
Sbjct: 370 ---PLPSSNGAPLLPSYPPLGYGIMSVP 394
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKD----YAFVHFEDRQEAITAMNELNG 151
+YV ++ + E LK E G V V+ R KD YAFV+F + A+ A+ ELN
Sbjct: 113 VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNN 172
Query: 152 QTVAGSTLEVS 162
+ G + VS
Sbjct: 173 AKLKGKRIRVS 183
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 30/158 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 264 VSWADPKNN-DSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 322
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 323 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 368
Query: 191 RGGPGPSGAHAPLLTG-PPMPRG--SVP--LQAALSST 223
P PS APLL PP+ G SVP AA +ST
Sbjct: 369 ---PLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPAST 403
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 28/148 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 643 VSWADPKNN-DSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 701
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 702 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 747
Query: 191 RGGPGPSGAHAPLL-TGPPMPRG--SVP 215
P PS APLL + PP+ G SVP
Sbjct: 748 ---PLPSSNGAPLLPSYPPLGYGIMSVP 772
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 9/105 (8%)
Query: 75 DIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------K 126
D IV WADP+ ++ + S+VK +YV+NL + T+ +LKE FE +G++ +V +
Sbjct: 252 DAIVSWADPRNS-ESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQ 310
Query: 127 RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
Y FVHF DR A+ A+ + G TLE SLAKP +D+K
Sbjct: 311 EKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQK 355
>gi|297611204|ref|NP_001065705.2| Os11g0139500 [Oryza sativa Japonica Group]
gi|108863976|gb|ABG22354.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215767918|dbj|BAH00147.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255679771|dbj|BAF27550.2| Os11g0139500 [Oryza sativa Japonica Group]
Length = 252
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 79/158 (50%), Gaps = 30/158 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 15 VSWADPKNN-DSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 73
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 74 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 119
Query: 191 RGGPGPSGAHAPLLTG-PPMPRG--SVP--LQAALSST 223
P PS APLL PP+ G SVP AA +ST
Sbjct: 120 ---PLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPAST 154
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ T VK +YV+NL + T+ +LK FE +G +E+V
Sbjct: 320 VSWADPKNNDSASTSQVVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNR 379
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ + G L+ SLAKPP+ KK + +
Sbjct: 380 YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV-------------- 425
Query: 191 RGGPGPSGAHAPLL-TGPPMPRG--SVP--LQAALSST 223
P PS APLL + PP+ G SVP AA +ST
Sbjct: 426 ---PLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPAST 460
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 23/170 (13%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKD----- 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK+ FE +G + ++ KD
Sbjct: 336 VSWADPKNG-DSASTSQVKSVYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHDNR 394
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERR------- 183
Y FVHF+DR A+ A+ + G L+ SLAKPP+DKK + + +
Sbjct: 395 YGFVHFKDRHMAMKALKNTEKYELDGQLLDCSLAKPPADKKDDTVSVSSSHKSSAKGGPL 454
Query: 184 --------MMQMMQGRGGPGPSGAHAPLLTGPPMPRGSVPLQAALSSTRM 225
+M G P GA P+L P P G+ + L R+
Sbjct: 455 LHAPLGYGIMPRPDAYGAPPSYGAAQPMLYAPGAPPGAAMVPMLLPDGRL 504
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
+Y+ ++ T E LKE E G V V+ + K YAF+ F+ + A+ A+ +L+
Sbjct: 184 VYLGGISNDATSEDLKELCEPVGEVVEVRIMPGKRESKGYAFITFKTKDLALKAIEKLSN 243
Query: 152 QTVAGSTLEVS 162
+T G + VS
Sbjct: 244 KTFKGKKIRVS 254
>gi|312371188|gb|EFR19435.1| hypothetical protein AND_22427 [Anopheles darlingi]
Length = 471
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 38/42 (90%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
CDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +EEKLK A
Sbjct: 255 CDIIVDWADPQEEPDEKTMSKVKVLYVRNLTQDTSEEKLKHA 296
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 22/170 (12%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ D+ S+VK +YV+NL + T+E+LK+ F+ +G++ +V +
Sbjct: 552 VSWADPKNA-DSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKN 610
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK------KKEEILRNRERR 183
FVHF +R A+ A+ + G LE SLAKP +D+K +K +L N R
Sbjct: 611 RIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPR 670
Query: 184 MMQMMQG------RGGPGPSGAHAPLLTG-PPMPRGSVPLQAALSSTRMG 226
+ G G G SG PL+ G P P G + L R+G
Sbjct: 671 VGYGFVGGAYGAVNAGYGGSGFGQPLIYGRGPTPAGMAMMPMLLPDGRIG 720
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 22/170 (12%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ D+ S+VK +YV+NL + T+E+LK+ F+ +G++ +V +
Sbjct: 596 VSWADPKNA-DSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKITKVVLPPAKSGQEKN 654
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK------KKEEILRNRERR 183
FVHF +R A+ A+ + G LE SLAKP +D+K +K +L N R
Sbjct: 655 RIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQKSGGSNSQKSGLLPNYPPR 714
Query: 184 MMQMMQG------RGGPGPSGAHAPLLTG-PPMPRGSVPLQAALSSTRMG 226
+ G G G SG PL+ G P P G + L R+G
Sbjct: 715 VGYGFVGGAYGAVNAGYGGSGFGQPLIYGRGPTPAGMAMMPMLLPDGRIG 764
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 23/146 (15%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ + + ++VK LYV+NL + T+E+LK+ FE G + +V
Sbjct: 257 VSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENR 316
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF++R A+ A+ + G L+ SLAKPP+DKK +
Sbjct: 317 YGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDS----------TVSTPTA 366
Query: 191 RGGP-GPSGAHAPL---LTGPPMPRG 212
+GGP PS +APL L G PRG
Sbjct: 367 KGGPLLPS--YAPLGYGLVGAYNPRG 390
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKR-----IKDYAFVHFEDRQEAITAMNELNGQ 152
+YV ++ + E LK+ FE G V V+ + YAF++F + A+ A+ L+ +
Sbjct: 106 VYVGGISSDVSSEDLKQLFESVGEVVEVRMRGKGDNRTYAFINFRTKAMALKAIQNLSNK 165
Query: 153 TVAGSTLEVS 162
+ G ++VS
Sbjct: 166 DLKGKKIKVS 175
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 23/146 (15%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ + + ++VK LYV+NL + T+E+LK+ FE G + +V
Sbjct: 256 VSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENR 315
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF++R A+ A+ + G L+ SLAKPP+DKK +
Sbjct: 316 YGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDS----------TVSTPTA 365
Query: 191 RGGP-GPSGAHAPL---LTGPPMPRG 212
+GGP PS +APL L G PRG
Sbjct: 366 KGGPLLPS--YAPLGYGLVGAYNPRG 389
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKR-----IKDYAFVHFEDRQEAITAMNELNGQ 152
+YV ++ + E LK+ FE G V V+ + YAF++F + A+ A+ L+ +
Sbjct: 105 VYVGGISSDVSSEDLKQLFESVGEVVEVRMRGKGDNRTYAFINFRTKAMALKAIQNLSNK 164
Query: 153 TVAGSTLEVS 162
+ G ++VS
Sbjct: 165 DLKGKKIKVS 174
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 11/139 (7%)
Query: 46 LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQ 105
+E+ + A I K G L D+ VDWA+P EP E MSKVK +YV NL
Sbjct: 529 FVEFSSHEEAAKAHAKIMKPGFRLAD--VDVKVDWAEPLNEPSEEVMSKVKSIYVCNLPV 586
Query: 106 YCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++ ++ F ++G +ER+ R D+AFV++ +R A+ A++ +G V
Sbjct: 587 DVNDDLIRSLFAEFGEIERIVLSKNLKSARRDDFAFVNYTERSAALAAIDARHGYKVDDD 646
Query: 158 -TLEVSLAKPPSDKKKKEE 175
L+V+LAKP +++ K+ +
Sbjct: 647 HVLDVTLAKPVTEQDKQRD 665
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 23/146 (15%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ + + ++VK LYV+NL + T+E+LK+ FE G + +V
Sbjct: 257 VSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENR 316
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF++R A+ A+ + G L+ SLAKPP+DKK +
Sbjct: 317 YGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDS----------TVSTPTA 366
Query: 191 RGGP-GPSGAHAPL---LTGPPMPRG 212
+GGP PS +APL L G PRG
Sbjct: 367 KGGPLLPS--YAPLGYGLVGAYNPRG 390
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKR-----IKDYAFVHFEDRQEAITAMNELNGQ 152
+YV ++ + E LK+ FE G V V+ + YAF++F + A+ A+ L+ +
Sbjct: 106 VYVGGISSDVSSEDLKQLFESVGEVVEVRMRGKGDNRTYAFINFRTKAMALKAIQNLSNK 165
Query: 153 TVAGSTLEVS 162
+ G ++VS
Sbjct: 166 DLKGKKIKVS 175
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 28/157 (17%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK+ FE +G + +V
Sbjct: 245 VSWADPKNN-DSASTSQVKSVYVKNLPKNVTQAELKKLFEHHGDITKVVLPPSRGGHDNR 303
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF+DR A+ A+ +AG L+ SLAKP + KK E +
Sbjct: 304 YGFVHFKDRSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSL------------ 351
Query: 191 RGGPGPSGAHAPLL-TGPPMPRG--SVPLQAALSSTR 224
PS APLL + PP+ G SVP ++ R
Sbjct: 352 -----PSSNGAPLLPSYPPLGYGIMSVPSAYGVAPAR 383
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ D+ + S+VK +YV+NL + T+ +LK FE++G + +V
Sbjct: 273 VSWADPKNN-DSASTSQVKSVYVKNLPKNVTQAQLKNLFERHGEITKVVLPPSRGGHDNR 331
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
Y FVHF+DR A+ A+ +AG L+ SLAKP + KK E +
Sbjct: 332 YGFVHFKDRSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERV 377
>gi|242067347|ref|XP_002448950.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
gi|241934793|gb|EES07938.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
Length = 498
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WADP+ + + ++VK LYV+N+ + T+E+LK+ FE G + +V
Sbjct: 257 VSWADPKNANEATSTAQVKSLYVKNIPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENR 316
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
Y FVHF++R A+ A+ + G L+ SLAKPP+DKK
Sbjct: 317 YGFVHFKERSMAMKALKNTERYELDGQLLDCSLAKPPADKK 357
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 76 IIVDWADPQEEPDTETMSKVKVL-------YVRNLTQYCTEEKLKEAFEQYGRVERVKR- 127
++VD DP++E + E +++ L YV L+ + E LK FE G V V+
Sbjct: 79 MVVD--DPKDENEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKRLFESVGEVVEVRMR 136
Query: 128 ----IKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162
K YAF++F ++ A+ A+ +L + + G ++VS
Sbjct: 137 GKGDNKAYAFINFRTKEMALKAIRKLCNKDLKGKKIKVS 175
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 8/107 (7%)
Query: 73 GCDIIVDWADPQEEPD-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------ 125
G V WADP+ PD + S+VK LYV+N+ + T E+LKE F ++G V +V
Sbjct: 256 GITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGK 315
Query: 126 -KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ F+H+ +R A+ A+ E + G LEV +AKP ++KK
Sbjct: 316 ASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKK 362
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 8/107 (7%)
Query: 73 GCDIIVDWADPQEEPD-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------ 125
G + V WA+P+ + D + ++VK +YV+NL + ++EK+K+ F+++G V ++
Sbjct: 271 GSQLTVSWAEPKGQTDPSSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAK 330
Query: 126 -KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVHF +R A+ A+ + G LEVS+AKP +DKK
Sbjct: 331 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKK 377
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + TE+ L+E E G + V+ KD +AFV F D+ A A+ ++
Sbjct: 121 VFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKGFAFVTFTDKDAAQRAIEDV 180
Query: 150 NGQTVAGSTLEVSLAK 165
+ G TL SL++
Sbjct: 181 QDREYKGRTLRCSLSQ 196
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 8/107 (7%)
Query: 73 GCDIIVDWADPQEEPDTETMS-KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------ 125
G + V WA+P+ D + + +VK +YV+NL + ++EK+K+ F+++G V ++
Sbjct: 257 GSQLTVSWAEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAK 316
Query: 126 -KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVHF +R A+ A+ + G LEVS+AKP +DKK
Sbjct: 317 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKK 363
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + TEE L+E E G + V+ KD +AFV F D++ A A+ ++
Sbjct: 107 VFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDV 166
Query: 150 NGQTVAGSTLEVSLAK 165
+ G TL SL++
Sbjct: 167 QDREFKGRTLRCSLSQ 182
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 8/107 (7%)
Query: 73 GCDIIVDWADPQEEPDTETMS-KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------ 125
G + V WA+P+ D + + +VK +YV+NL + ++EK+K+ F+++G V ++
Sbjct: 255 GSQLTVSWAEPKGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAK 314
Query: 126 -KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVHF +R A+ A+ + G LEVS+AKP +DKK
Sbjct: 315 AGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKK 361
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + TEE L+E E G + V+ KD +AFV F D++ A A+ ++
Sbjct: 107 VFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKGFAFVTFMDKEAAQRAIEDV 166
Query: 150 NGQTVAGSTLEVSLAK 165
+ G TL SL++
Sbjct: 167 QDREFKGRTLRCSLSQ 182
>gi|321464950|gb|EFX75954.1| hypothetical protein DAPPUDRAFT_249502 [Daphnia pulex]
Length = 93
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Query: 77 IVDWADPQEEPDT--ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFV 134
IVD Q E T ++ SK+KVL V N+++ + E++KE F ++G ++ V++ +DYAFV
Sbjct: 4 IVDGVGSQAERKTKIDSSSKIKVLPVGNISKTSSMERIKELFGEHGPIQLVEKFEDYAFV 63
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSL 163
H+E+R +A A+ +L+G+TV G++L VS
Sbjct: 64 HYENRYDAAKAVEDLHGRTVDGASLTVSF 92
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 15/121 (12%)
Query: 59 LDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQ 118
+D FK G + S V WADP+ D+ T S+VK +YV+NL + T+++LK+ FE+
Sbjct: 184 IDPKFKLGDNAPS------VSWADPKNA-DSSTSSQVKAIYVKNLPKTVTQDQLKKLFER 236
Query: 119 YGRVERV--------KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170
+G++ +V + FVHF +R A+ A+ + + G ++E +LAKP S++
Sbjct: 237 HGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELNGQSVECALAKPQSEQ 296
Query: 171 K 171
K
Sbjct: 297 K 297
>gi|324504156|gb|ADY41795.1| APOBEC1 complementation factor [Ascaris suum]
Length = 227
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
F +G V+ VK+IKDYAF+HF +R+ A+ AM LNG + G +E+SLAKP SDKKK
Sbjct: 2 FSAHGEVDHVKKIKDYAFIHFNEREPAVKAMEALNGTVLEGVPIEISLAKPQSDKKK 58
>gi|226506072|ref|NP_001146195.1| uncharacterized protein LOC100279765 [Zea mays]
gi|219886139|gb|ACL53444.1| unknown [Zea mays]
Length = 287
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WAD + + + S+VK LYV+NL + T+E+LK+ FE G + +V
Sbjct: 44 VSWADHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENR 103
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF++R + A+ + G L+ S AKPP+DKK + R +
Sbjct: 104 YGFVHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYA 163
Query: 191 RGGPGPSGAHAPLLTG 206
G G +GA+ PL G
Sbjct: 164 PLGYGLAGAYNPLGKG 179
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ D+ S+VK +YV+NL + T+++LK+ FE +G++ +V +
Sbjct: 212 VSWADPKNA-DSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKS 270
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
FVHF +R A+ A+ + G LE SLAKP +D+K
Sbjct: 271 RIGFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQK 312
>gi|242083908|ref|XP_002442379.1| hypothetical protein SORBIDRAFT_08g019140 [Sorghum bicolor]
gi|241943072|gb|EES16217.1| hypothetical protein SORBIDRAFT_08g019140 [Sorghum bicolor]
Length = 441
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 10/116 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV----KRIKDYAF 133
++WAD + D + M+K+K +V NL + EE L++ FEQ+G V RV K F
Sbjct: 9 INWADKESHVDPDEMAKIKSAFVGNLPEDVNEEYLRKLFEQFGEVVRVAISRKGQCPVGF 68
Query: 134 VHFEDRQEAITAMNELNGQTVAGST------LEVSLAKPPSDKKKKEEILRNRERR 183
VHF +R E A+ E++G+TV G ++VS+A+P +D KK R RR
Sbjct: 69 VHFANRSELENAIEEMDGKTVRGPDRGPSFRIQVSVARPAADNDKKRSREEVRTRR 124
>gi|413924827|gb|AFW64759.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 509
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WAD + + + S+VK LYV+NL + T+E+LK+ FE G + +V
Sbjct: 266 VSWADHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENR 325
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF++R + A+ + G L+ S AKPP+DKK + R +
Sbjct: 326 YGFVHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYA 385
Query: 191 RGGPGPSGAHAPLLTG 206
G G +GA+ PL G
Sbjct: 386 PLGYGLAGAYNPLGKG 401
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITAMNELNGQ 152
+YV L+ + E LK+ FE G V V+ K YAF++F ++ A+ A+ +L+ +
Sbjct: 115 VYVGGLSSDVSSEDLKQLFESVGEVAEVRMRGKGDNKTYAFINFRTKEMALKAIQKLSNK 174
Query: 153 TVAGSTLEVS 162
+ G ++VS
Sbjct: 175 DLKGKKIKVS 184
>gi|238006198|gb|ACR34134.1| unknown [Zea mays]
gi|413924828|gb|AFW64760.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 499
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WAD + + + S+VK LYV+NL + T+E+LK+ FE G + +V
Sbjct: 256 VSWADHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENR 315
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y FVHF++R + A+ + G L+ S AKPP+DKK + R +
Sbjct: 316 YGFVHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYA 375
Query: 191 RGGPGPSGAHAPLLTG 206
G G +GA+ PL G
Sbjct: 376 PLGYGLAGAYNPLGKG 391
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITAMNELNGQ 152
+YV L+ + E LK+ FE G V V+ K YAF++F ++ A+ A+ +L+ +
Sbjct: 105 VYVGGLSSDVSSEDLKQLFESVGEVAEVRMRGKGDNKTYAFINFRTKEMALKAIQKLSNK 164
Query: 153 TVAGSTLEVS 162
+ G ++VS
Sbjct: 165 DLKGKKIKVS 174
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 73 GCDIIVDWADPQ-EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------ 125
G + V WA+P+ + ++VK +YV+NL + ++EK+KE FE++G V +V
Sbjct: 256 GSQLTVSWAEPKGSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAK 315
Query: 126 -KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVHF +R A+ A+ G LEVS+AKP DKK
Sbjct: 316 DGHKRDFGFVHFAERSSALKAVKGSEKYEFNGQVLEVSMAKPLGDKK 362
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + TEE L+E + +G + V+ +KD +AFV+F ++ A A+ EL
Sbjct: 106 VFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKEAAQRAIEEL 165
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G TL SL++
Sbjct: 166 HDKEHKGRTLRCSLSQ 181
>gi|321465036|gb|EFX76040.1| hypothetical protein DAPPUDRAFT_32249 [Daphnia pulex]
Length = 225
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G DIIVDWADP E + +KVL+V +++ + E++KE F ++G ++ V++ DYA
Sbjct: 146 GSDIIVDWADPNEAKKHKI---IKVLHVGIISKRSSMERIKELFGEHGPIQLVEKFADYA 202
Query: 133 FVHFEDRQEAITAMNELNGQTV 154
FVH E+R +A A+ +LN +TV
Sbjct: 203 FVHCENRDDAAKAVEDLNDRTV 224
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ D+ S+VK +YV+NL + T+++LK+ FE +G++ +V +
Sbjct: 281 VSWADPKNA-DSSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKS 339
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
FVHF +R A+ A+ + G LE SLAKP +D+K
Sbjct: 340 RIGFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQK 381
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 73 GCDIIVDWADPQ-EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------ 125
G + V WA+P+ + ++VK +YV+NL + ++EK+KE FE++G V +V
Sbjct: 259 GSQLTVSWAEPKGSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAK 318
Query: 126 -KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVHF +R A+ A+ G LEVS+AKP DKK
Sbjct: 319 DGHKRDFGFVHFAERSSALKAVKGSEKYEFDGQVLEVSMAKPLGDKK 365
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + TEE L+E + +G + V+ +KD +AFV+F + A A+ EL
Sbjct: 109 VFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAFVNFTAKDAAQRAIEEL 168
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G TL SL++
Sbjct: 169 HDKEHKGRTLRCSLSQ 184
>gi|255578939|ref|XP_002530322.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530126|gb|EEF32038.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 481
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ + S+VK +YV+NL T+++L++ FE++G+V +V
Sbjct: 267 VSWADPKNA-GSSAASQVKAVYVKNLPHDITQDRLRQLFERHGKVTKVVVPPAKAGHERS 325
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+AFVHF +R A+ A+ + G LE SLAKP +D+K
Sbjct: 326 RFAFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQK 367
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ ++ S+VK +Y++NL +Y T+++L+E F Q+G++ +V +
Sbjct: 249 VSWADPKNV-ESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENC 307
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ FVHF +R A+ A+ + G L SLAKP +DKK
Sbjct: 308 RFGFVHFAERSSAMKALKNTEKYEIDGHILGCSLAKPQADKK 349
>gi|321475098|gb|EFX86062.1| hypothetical protein DAPPUDRAFT_45498 [Daphnia pulex]
Length = 269
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVK 126
LL G ++ VDWA+P+ + E +SKV+VLYVRNL E++L+E F+ G VE+VK
Sbjct: 175 LLLWGKNVAVDWAEPEPVVEEEILSKVRVLYVRNLLITTKEKELEELFDTAGNGGVEKVK 234
Query: 127 RIKDYAFVHFEDRQEAITAMNELNGQTVA 155
+ D+AF+HF R +A AM+ L G V+
Sbjct: 235 ILNDFAFIHFGSRSQAQQAMDALQGIRVS 263
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPD-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------KRIKD 130
V WADP+ P+ + ++VK LYV+N+ + + E+LKE F+++G V ++ +D
Sbjct: 245 VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD 304
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ FVH+ +R A+ A+ + V G LEV LAKP +++K
Sbjct: 305 FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 345
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + EE L++ E+ G + V+ +KD YAFV F+ + A A+ EL
Sbjct: 98 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 157
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G T+ SL++
Sbjct: 158 HSKEFKGKTIRCSLSE 173
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPD-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------KRIKD 130
V WADP+ P+ + ++VK LYV+N+ + + E+LKE F+++G V ++ +D
Sbjct: 273 VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD 332
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ FVH+ +R A+ A+ + V G LEV LAKP +++K
Sbjct: 333 FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + EE L++ E+ G + V+ +KD YAFV F+ + A A+ EL
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G T+ SL++
Sbjct: 178 HSKEFKGKTIRCSLSE 193
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPD-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------KRIKD 130
V WADP+ P+ + ++VK LYV+N+ + + E+LKE F+++G V ++ +D
Sbjct: 273 VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD 332
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ FVH+ +R A+ A+ + V G LEV LAKP +++K
Sbjct: 333 FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPD-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------KRIKD 130
V WADP+ P+ + ++VK LYV+N+ + + E+LKE F+++G V ++ +D
Sbjct: 272 VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD 331
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ FVH+ +R A+ A+ + V G LEV LAKP +++K
Sbjct: 332 FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 372
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPD-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------KRIKD 130
V WADP+ P+ + ++VK LYV+N+ + + E+LKE F+++G V ++ +D
Sbjct: 299 VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD 358
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ FVH+ +R A+ A+ + V G LEV LAKP +++K
Sbjct: 359 FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 399
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ ++ S+VK +Y++NL +Y T+++L+E F Q+G++ +V +
Sbjct: 278 VSWADPKNV-ESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENC 336
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ FVHF +R A+ A+ + G L SLAKP +DKK
Sbjct: 337 RFGFVHFAERSSAMKALKNTEKYEIDGHILGCSLAKPQADKK 378
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 8/102 (7%)
Query: 78 VDWADPQEEPDTETM--SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------KRIK 129
V WADP+ P + S+VK LYV+N+ + + E+LK F+++G V +V +
Sbjct: 263 VSWADPKGTPPDHSAASSQVKALYVKNIPENTSTEQLKGLFQRHGDVTKVVMPPGKAGKR 322
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
D+ F+H+ +R A+ A+ + + G LEV LAKP +DKK
Sbjct: 323 DFGFIHYAERSSALKAVRDAEKYEIDGQVLEVVLAKPQADKK 364
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 73 GCDIIVDWADPQ---EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV---- 125
G + V WA+P+ + ++VK +YV+NL + ++EK+KE FE +G V +V
Sbjct: 261 GSQLTVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPP 320
Query: 126 ---KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVHF +R A+ A+ + G LEVS+AKP DKK
Sbjct: 321 AKAGNKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKK 369
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + TE+ L E E +G + V+ +KD +AFV F + A A+ +L
Sbjct: 111 VFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIEDL 170
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G TL SL++
Sbjct: 171 HDKEHKGRTLRCSLSQ 186
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 73 GCDIIVDWADPQ---EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV---- 125
G + V WA+P+ + ++VK +YV+NL + ++EK+KE FE +G V +V
Sbjct: 261 GSQLTVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPP 320
Query: 126 ---KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVHF +R A+ A+ + G LEVS+AKP DKK
Sbjct: 321 AKAGNKRDFGFVHFAERSSALKAVKGNEKYEIDGQVLEVSMAKPLGDKK 369
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + TE+ L E E +G + V+ +KD +AFV F + A A+ +L
Sbjct: 111 VFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQHAIEDL 170
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G TL SL++
Sbjct: 171 HDKEHKGRTLRCSLSQ 186
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 73 GCDIIVDWADPQ---EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV---- 125
G + V WA+P+ + ++VK +YV+NL + ++EK+KE FE +G V +V
Sbjct: 261 GSQLTVSWAEPKGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPP 320
Query: 126 ---KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVHF +R A+ A+ + G LEVS+AKP DKK
Sbjct: 321 AKAGNKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKK 369
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + TE+ L E E +G + V+ +KD +AFV F + A A+ +L
Sbjct: 111 VFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIEDL 170
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G TL SL++
Sbjct: 171 HDKEHKGRTLRCSLSQ 186
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ ++ S+VK +YV+NL + T+E+LK+ FE++G++ +V +
Sbjct: 285 VSWADPKNA-ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKN 343
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
FVHF +R A+ A+ + G LE SLAKP +D+K
Sbjct: 344 RIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQK 385
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ ++ S+VK +YV+NL + T+E+LK+ FE++G++ +V +
Sbjct: 277 VSWADPKNA-ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKN 335
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
FVHF +R A+ A+ + G LE SLAKP +D+K
Sbjct: 336 RIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQK 377
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ ++ +S VK +YV+NL + T+++LKE FE +G++ +V +
Sbjct: 260 VSWADPRNS-ESSAISLVKSVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQEKS 318
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
+ FVHF +R A+ A+ + G LE SLAKP ++ +K
Sbjct: 319 RFGFVHFAERSSAMKALKNTEKYEIDGQLLECSLAKPQANSQK 361
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 12/111 (10%)
Query: 73 GCDIIVDWADPQ-----EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-- 125
G + V WA+P+ + ++VK +YV+NL + ++EK+K+ FE +G V ++
Sbjct: 164 GSQLTVSWAEPKGSSSSSSDSSSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVL 223
Query: 126 -----KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVHF +R A+ A+ + G LEVS+AKP SDKK
Sbjct: 224 PPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 274
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WAD + ++ + ++VK LYV+NL + T+E+LK+ FE G V +V
Sbjct: 248 VSWADTKNGGESASTAQVKSLYVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHENR 307
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
Y FVHF++R A+ A+ + + G L+ SLAKP +DKK
Sbjct: 308 YGFVHFKERSMAMKALEDTERFELDGQLLDCSLAKPLADKK 348
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 12/116 (10%)
Query: 73 GCDIIVDWADPQ-----EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-- 125
G + V WA+P+ + + ++VK +YV+NL + ++EK+K+ FE +G V ++
Sbjct: 263 GSQLTVSWAEPKGSSSSSSDSSSSAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVL 322
Query: 126 -----KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
+D+ FVHF +R A+ A+ + G LEVS+AKP SDKK +
Sbjct: 323 PPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKPDHSV 378
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L + TEE L+E E G + V+ +KD +AFV F + A A+ EL
Sbjct: 113 VFIGGLPRDTTEEDLRELCEPLGEIHEVRLMKDKDTKENKGFAFVTFTAKDVAQRAIEEL 172
Query: 150 NGQTVAGSTLEVSLAK 165
+ + G TL SL++
Sbjct: 173 HDKDHKGRTLRCSLSQ 188
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 21/124 (16%)
Query: 59 LDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQ 118
+D FK G + + V WADP+ D+ S+VK LYV+NL + T+++LK+ FE+
Sbjct: 252 MDPKFKLGDNAPA------VSWADPKNA-DSSASSQVKALYVKNLPKTVTQDQLKKLFER 304
Query: 119 YGRVERV-----------KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167
+G++ +V RI FVHF +R A+ A+ + + G +E +LAKP
Sbjct: 305 HGKITKVVLPPAKSGQEKNRI---GFVHFAERSSAMKALKDTEKYELDGQLVECALAKPQ 361
Query: 168 SDKK 171
S++K
Sbjct: 362 SEQK 365
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 12/111 (10%)
Query: 73 GCDIIVDWADPQ-----EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-- 125
G + V WA+P+ + ++VK +YV+NL + ++EK+K+ FE +G V ++
Sbjct: 261 GSQLTVSWAEPKGSSSSSSDSSSPAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVL 320
Query: 126 -----KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVHF +R A+ A+ + G LEVS+AKP SDKK
Sbjct: 321 PPAKAGHKRDFGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKK 371
>gi|356539254|ref|XP_003538114.1| PREDICTED: APOBEC1 complementation factor-like [Glycine max]
Length = 505
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ ++ S+VK +YV+NL + T+E+LK+ FE++G++ +V +
Sbjct: 281 VSWADPKNA-ESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKN 339
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
FVHF +R A+ A+ + G L+ SLAKP +D+K
Sbjct: 340 RIGFVHFAERSNAMKALKNTERYELEGQLLQCSLAKPQADQK 381
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERV
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV 367
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKD 130
V WAD + ++ + S+VK LY++NL + T+E+LK FE G V +V
Sbjct: 249 VSWADTKNGGESASTSQVKSLYIKNLPKTVTQEQLKRLFEHLGEVTKVVIPPAKAGHENR 308
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
Y FVHF++R A+ A+ + + G L+ SLAKP ++KK
Sbjct: 309 YGFVHFKERSMAMKALKDTERYELDGHLLDCSLAKPLAEKK 349
>gi|414868617|tpg|DAA47174.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 609
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD----YAF 133
++WAD + D + M+K+K ++ NL + EE L++ F Q+G V RV + AF
Sbjct: 181 INWADKESHLDPDEMAKMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAISRKGQCPVAF 240
Query: 134 VHFEDRQEAITAMNELNGQTVAGS------TLEVSLAKPPSDKKKKEEILRNRERR 183
VHF R E A+ E++G+TV G ++VS+A+P +D KK R RR
Sbjct: 241 VHFAKRSELENAIEEMDGKTVRGPGRGPSFKIQVSVARPTADNDKKRSREEVRTRR 296
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
++V L + TE L+E F G + + +KD Y FV F R A TA + N
Sbjct: 21 VFVGGLPRSATESTLREIFSSCGEIIDARIMKDQSGHSKGYGFVRFAKRDYANTAKRQKN 80
Query: 151 GQTVAGSTLEVSLA 164
G V G L V L+
Sbjct: 81 GIEVQGKRLVVELS 94
>gi|212274617|ref|NP_001130787.1| uncharacterized protein LOC100191891 [Zea mays]
gi|194690114|gb|ACF79141.1| unknown [Zea mays]
gi|414868618|tpg|DAA47175.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 605
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD----YAF 133
++WAD + D + M+K+K ++ NL + EE L++ F Q+G V RV + AF
Sbjct: 181 INWADKESHLDPDEMAKMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAISRKGQCPVAF 240
Query: 134 VHFEDRQEAITAMNELNGQTVAGS------TLEVSLAKPPSDKKKKEEILRNRERR 183
VHF R E A+ E++G+TV G ++VS+A+P +D KK R RR
Sbjct: 241 VHFAKRSELENAIEEMDGKTVRGPGRGPSFKIQVSVARPTADNDKKRSREEVRTRR 296
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
++V L + TE L+E F G + + +KD Y FV F R A TA + N
Sbjct: 21 VFVGGLPRSATESTLREIFSSCGEIIDARIMKDQSGHSKGYGFVRFAKRDYANTAKRQKN 80
Query: 151 GQTVAGSTLEVSLA 164
G V G L V L+
Sbjct: 81 GIEVQGKRLVVELS 94
>gi|321455469|gb|EFX66600.1| hypothetical protein DAPPUDRAFT_262824 [Daphnia pulex]
Length = 341
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 48/70 (68%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVA 155
KV VRNL EEKL+E FE +G ++RVK ++DYA+ E+R +A+ A++ L+G +
Sbjct: 55 KVACVRNLPHDFKEEKLQEVFEVHGPIQRVKILEDYAYARIENRDDAVHALDALDGYDLY 114
Query: 156 GSTLEVSLAK 165
G+ ++SLAK
Sbjct: 115 GAIFQISLAK 124
>gi|321465026|gb|EFX76030.1| hypothetical protein DAPPUDRAFT_322782 [Daphnia pulex]
Length = 329
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 57/108 (52%), Gaps = 18/108 (16%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQ-YGR--- 121
G LL G DIIVDWADP EE KVL V N + E LK+ + GR
Sbjct: 229 GFCLLDFGSDIIVDWADPNEE--------TKVLRVGNSSSKINLEDLKKNVRRACGRRTF 280
Query: 122 ------VERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163
++ V++ DYAFVH+E+R +A A+ L+G TV G+ L VS
Sbjct: 281 RPAGWGIQLVEKFDDYAFVHYENRDDAAKAVEALHGHTVDGARLSVSF 328
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WA+P+ D+ S+VK +YV+NL + T+++LK+ FE +G++ +V +
Sbjct: 269 VSWAEPKNA-DSSASSQVKAIYVKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPGQEKN 327
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
FVHF +R A+ A+ + G +E SLAKP +D+K
Sbjct: 328 RIGFVHFAERSSAMKALKNTERYELDGQVVECSLAKPQADQK 369
>gi|238908862|gb|ACF86800.2| unknown [Zea mays]
gi|414868619|tpg|DAA47176.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 438
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD----YAF 133
++WAD + D + M+K+K ++ NL + EE L++ F Q+G V RV + AF
Sbjct: 10 INWADKESHLDPDEMAKMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAISRKGQCPVAF 69
Query: 134 VHFEDRQEAITAMNELNGQTVAGS------TLEVSLAKPPSDKKKKEEILRNRERR 183
VHF R E A+ E++G+TV G ++VS+A+P +D KK R RR
Sbjct: 70 VHFAKRSELENAIEEMDGKTVRGPGRGPSFKIQVSVARPTADNDKKRSREEVRTRR 125
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------- 128
I V WA Q E VK +YVRNL + TEE+L+E F ++G V +V +
Sbjct: 281 ITVKWATSQRSSSEE----VKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQP 336
Query: 129 -KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+D+ FVH+ D A+ A+ + T+ L VSLA+P SDKK
Sbjct: 337 KRDFGFVHYADHSSAMKAIEKTEKYTLEDRELSVSLARPLSDKK 380
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRV-----ERVKRIKDYAFVHFEDRQEAITAMNELNGQ 152
++V NL + T+E L EQ+G V +R +YAFV F ++ A A+ LNG
Sbjct: 131 VFVGNLPRNITKEDLTSLCEQHGEVFDVIIKREASKLEYAFVTFTTKESAKKAIETLNGF 190
Query: 153 TVAGSTLEVSLAKP 166
L VS ++P
Sbjct: 191 EFKDKKLRVSESQP 204
>gi|321469332|gb|EFX80313.1| hypothetical protein DAPPUDRAFT_243777 [Daphnia pulex]
Length = 171
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V DP +EP T++KV L +RN+ TE+++K+ F +YG + R K+ ++ AF+ FE
Sbjct: 69 VTVTDPADEPGNVTVTKV--LCIRNILVNTTEDEMKKVFGEYGPIFRFKKFQNVAFISFE 126
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKP 166
++ +A A + LN Q++ G L +S KP
Sbjct: 127 EKADAKRAKDALNFQSLNGEQLNISFLKP 155
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LE D +IA K K K L + +I V WA+P EPD E + KVK +Y L
Sbjct: 630 LETHKDAQIAFK-----KLHKKDLGKLQNIKVAWAEPLSEPDEEELLKVKSVYAEYLPPS 684
Query: 107 CTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITAMNELNGQTVAGS- 157
EEKL+ F ++G +E + R KD+AF++F R+ A+ + +T+
Sbjct: 685 WDEEKLRSYFTKFGEIENIVLSRNLHSSRRKDFAFINFSTREAALACIESFYHETLTNEG 744
Query: 158 ---TLEVSLAKP 166
++VSLAKP
Sbjct: 745 SQVNVKVSLAKP 756
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WADP+ + S+VK +YV+NL + +++L++ FE +G+V +V
Sbjct: 225 VSWADPKNA-GSSAASQVKAVYVKNLPEDINQDRLRQLFEHHGKVTKVVLPPAKPGHEKS 283
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ FVHF +R A+ A+ + G L+ SLAKP +D K
Sbjct: 284 RFGFVHFAERSSAMKALKNTEKYKIDGQVLDCSLAKPQADLK 325
>gi|54650912|gb|AAV37034.1| AT19630p [Drosophila melanogaster]
Length = 265
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 47/69 (68%), Gaps = 7/69 (10%)
Query: 157 STLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSG----AHAPLLTGPPM-PR 211
S +EVSLAKPPSDKKKKEEILR RERRMMQMMQ R PG G H +++ PM P
Sbjct: 1 SNIEVSLAKPPSDKKKKEEILRARERRMMQMMQAR--PGIVGNLSPTHPSIMSLTPMRPG 58
Query: 212 GSVPLQAAL 220
+PL+ +
Sbjct: 59 ARMPLRTPI 67
>gi|158254301|gb|AAI54223.1| Zgc:85696 [Danio rerio]
Length = 556
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V NL+ CT E L+E F+ +G+V ++K YAFVH E++++A+ A+ L+G + G
Sbjct: 85 VFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGR 144
Query: 158 TLEVSLAK 165
L V L+K
Sbjct: 145 PLSVELSK 152
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL T+E+L FE YG+V ++ +AFVH + A A+ ELNG+ G
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREFKGR 68
Query: 158 TLEV 161
L V
Sbjct: 69 NLVV 72
>gi|47086421|ref|NP_997973.1| RNA binding motif protein 14 [Danio rerio]
gi|46249892|gb|AAH68361.1| Zgc:85696 [Danio rerio]
gi|68085002|gb|AAH56604.2| Zgc:85696 [Danio rerio]
Length = 556
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V NL+ CT E L+E F+ +G+V ++K YAFVH E++++A+ A+ L+G + G
Sbjct: 85 VFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSFKGR 144
Query: 158 TLEVSLAK 165
L V L+K
Sbjct: 145 PLSVELSK 152
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL T+E+L FE YG+V ++ +AFVH + A A+ ELNG+ G
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREFKGR 68
Query: 158 TLEV 161
L V
Sbjct: 69 NLVV 72
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 78 VDWADPQE---EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------K 126
V WADP+ ++ VK +YV+NL + T++ L++ FE +G+V +V
Sbjct: 246 VSWADPKNAGSSAASQVCCSVKAVYVKNLPEDITQDGLRQLFEHHGKVTKVVLPPAKPGH 305
Query: 127 RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ FVHF +R A+ A+ + G L+ SLAKP +D+K
Sbjct: 306 EKSRFGFVHFAERSSAMKALKNTEKYEIDGHVLDCSLAKPHTDQK 350
>gi|321458905|gb|EFX69965.1| hypothetical protein DAPPUDRAFT_328608 [Daphnia pulex]
Length = 110
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER--VKRIKDYAFVHFEDRQEAITAMNEL 149
+ + KV VRNL TEEKL+E FE +G ++R +K ++DYA+V ++R +A+ A++ L
Sbjct: 24 LEEFKVACVRNLPHDFTEEKLQEVFEVHGPIQRSDMKILEDYAYVRIDNRDDAVHALDAL 83
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
+G G+TL++SLAK K
Sbjct: 84 DGYDFYGATLQISLAKANCVAK 105
>gi|124360410|gb|ABD33357.2| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 742
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V+WA+P+ D+ S+VK +YV+NL + T+E+LK+ FE +G++ +V +
Sbjct: 504 VNWAEPKNA-DSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKN 562
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
FVHF +R A+ A+ + G LE SLAK +D K
Sbjct: 563 RIGFVHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPK 604
>gi|357501821|ref|XP_003621199.1| RNA-binding protein [Medicago truncatula]
gi|355496214|gb|AES77417.1| RNA-binding protein [Medicago truncatula]
Length = 782
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V+WA+P+ D+ S+VK +YV+NL + T+E+LK+ FE +G++ +V +
Sbjct: 539 VNWAEPKNA-DSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKN 597
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
FVHF +R A+ A+ + G LE SLAK +D K
Sbjct: 598 RIGFVHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPK 639
>gi|432920249|ref|XP_004079910.1| PREDICTED: uncharacterized protein LOC101158309 [Oryzias latipes]
Length = 564
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY 131
RG +++V EE + KV +V NL+ CT E L++ F+ +G+V ++K Y
Sbjct: 66 RGRNLVV------EESRGRPLHSTKV-FVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGY 118
Query: 132 AFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
AFVH E++++A+ A+ L+G + G L V L+K
Sbjct: 119 AFVHMENKEDALQAIEALHGTSFKGRPLSVELSK 152
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL T+E+L FE YG+V ++ +AFVH + A A+ ELNG+ G
Sbjct: 9 LFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREFRGR 68
Query: 158 TLEV 161
L V
Sbjct: 69 NLVV 72
>gi|348520155|ref|XP_003447594.1| PREDICTED: hypothetical protein LOC100696008 [Oreochromis
niloticus]
Length = 575
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY 131
RG +++V EE + KV +V NL+ CT E L++ F+ +G+V ++K Y
Sbjct: 66 RGRNLVV------EESRGRPLHSTKV-FVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGY 118
Query: 132 AFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
AFVH E++++A+ A+ L+G + G L V L+K
Sbjct: 119 AFVHMENKEDALQAIEALHGTSFKGRPLSVELSK 152
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL T+E+L FE YG+V ++ +AFVH + A A+ ELNG+ G
Sbjct: 9 LFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREFRGR 68
Query: 158 TLEV 161
L V
Sbjct: 69 NLVV 72
>gi|47212234|emb|CAF96201.1| unnamed protein product [Tetraodon nigroviridis]
Length = 565
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY 131
RG +++V EE + KV +V NL+ CT E L++ F+ +G+V ++K Y
Sbjct: 66 RGRNLVV------EESRGRPLHSTKV-FVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGY 118
Query: 132 AFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
AFVH E++++A+ A+ L+G + G L V L+K
Sbjct: 119 AFVHMENKEDALQAIEALHGTSFKGRPLSVELSK 152
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V NL T+E+L FE YG+V ++ +AFVH + A A+ ELNG+ G
Sbjct: 9 IFVGNLALDTTQEELSCIFEPYGQVVSCSVLRQFAFVHLQGEGSAERAIRELNGREFRGR 68
Query: 158 TLEV 161
L V
Sbjct: 69 NLVV 72
>gi|451850002|gb|EMD63305.1| hypothetical protein COCSADRAFT_161812 [Cochliobolus sativus
ND90Pr]
Length = 489
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 73 GCDIIVDWADPQEEPDTETMSK---------VKVLYVRNLTQYCTEEKLKEAFEQYGRVE 123
G + VD++ P+++PD + L++ NL+ CT E ++E F +YG V
Sbjct: 303 GRPLNVDFSTPRQKPDANARANKFGDKRSAPSNTLFIGNLSFDCTNETIQEVFAEYGNVT 362
Query: 124 RVK--------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169
RV +K + +V F ++EA A+ L+GQ VAG L V A P D
Sbjct: 363 RVSLPTDRDSGALKGFGYVDFGSQEEATAALEALHGQDVAGRPLRVDFAAPRDD 416
>gi|307181116|gb|EFN68850.1| Probable RNA-binding protein 46 [Camponotus floridanus]
Length = 471
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 75 DIIVDWADPQ--EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKD 130
+I VDWADP+ E D + M +V L+VRNL +++ ++ F ++ V ++K+I
Sbjct: 208 EIAVDWADPEPGEPIDEDIMERVTTLFVRNLALDISQQNVRGIFHRHTNVPILKLKKINH 267
Query: 131 YAFVHFEDRQEAITAMNELN--GQTVAGSTLEVSLAKP 166
+AF+H+E+RQ A M+ + G V E+ AKP
Sbjct: 268 FAFIHYENRQAAQIVMDIMQKPGSIVEKQGWEICWAKP 305
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 75 DIIVDWADPQ--EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKD 130
+I VDWADP+ + D + M V L+VRNL +++K++E +Y V ++K+I
Sbjct: 209 EIAVDWADPEPGDPIDEDIMETVTALFVRNLALDMSQQKVREILYRYTNVPILKLKKINH 268
Query: 131 YAFVHFEDRQEAITAMN--ELNGQTVAGSTLEVSLAKP 166
+AFVH+E+R+ A T MN E V E+ AKP
Sbjct: 269 FAFVHYENREAAKTVMNIMERPDSIVEKQGWEIRWAKP 306
>gi|452001822|gb|EMD94281.1| hypothetical protein COCHEDRAFT_1094167 [Cochliobolus
heterostrophus C5]
Length = 501
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 78 VDWADPQEEPDTETMSK---------VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-- 126
VD++ P+++PD + L++ NL+ CT E ++E F +YG V RV
Sbjct: 321 VDFSTPRQKPDANARANKFGDKRSAPSNTLFIGNLSFDCTNETIQEVFAEYGNVTRVSLP 380
Query: 127 ------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169
+K + +V F ++EA A+ L GQ VAG L V A P D
Sbjct: 381 TDRDSGALKGFGYVDFGSQEEATAALEALQGQDVAGRPLRVDFAAPRDD 429
>gi|307210260|gb|EFN86910.1| APOBEC1 complementation factor [Harpegnathos saltator]
Length = 419
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 75 DIIVDWADPQ--EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKD 130
+I VDWADP+ + D + M V L+VRNLT +++K++E F ++ V ++K+I
Sbjct: 138 EIAVDWADPEPGDPVDEDIMETVTALFVRNLTLEMSQQKVREVFHRHTNVPILKLKKINH 197
Query: 131 YAFVHFEDRQEAITAMNEL--NGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMM 188
+AF+H+E+R A M+ + + V E+ AKP K E R+R + + +
Sbjct: 198 FAFIHYENRGAAQAVMDIMQKSNSVVEKEGWEIRWAKPIGASKFIE-----RQRYIREAV 252
Query: 189 QGRG------GPGPSGAH 200
G G P AH
Sbjct: 253 ANSGVRTASKGGYPKQAH 270
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 75 DIIVDWADPQ--EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKD 130
+I VDWADP+ + D E M V L+VRNL +++K+++ F++ ++ ++K+I
Sbjct: 215 EIAVDWADPEPGDPIDEEIMESVTALFVRNLNLDMSQQKVRDIFQKNTKIPILKLKKINH 274
Query: 131 YAFVHFEDRQEAITAMNELN-GQTVAGST-LEVSLAKP 166
+AFVH+E+RQ A T M+ + +A S E+ AKP
Sbjct: 275 FAFVHYENRQAAQTVMDIMTRSNGIADSEGWEIRWAKP 312
>gi|296082223|emb|CBI21228.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 11/115 (9%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--- 125
LL +V+WA+ + E D E ++K+ + +V NL + E+ LK+ F +G+VE+V
Sbjct: 125 LLGDSWHPVVEWAE-EPEIDPEELAKITIAFVGNLPKDANEDYLKKLFGPFGKVEKVLLS 183
Query: 126 -KRIKDYAFVHFEDRQEAITAMNELNGQTVAGST------LEVSLAKPPSDKKKK 173
K FVHF R + A+ E+N +TV G + L+V++AKP K+K+
Sbjct: 184 KKGQSPVGFVHFAKRSDLDNAIKEMNEKTVQGPSRGPAFKLQVAVAKPLDRKRKR 238
>gi|410929393|ref|XP_003978084.1| PREDICTED: uncharacterized protein LOC101079487 [Takifugu rubripes]
Length = 568
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY 131
RG +++V EE + KV +V NL+ CT E L++ F+ +G+V ++K Y
Sbjct: 66 RGRNLVV------EESRGRPLHSTKV-FVGNLSGMCTTEDLQQLFQTFGKVLECDKVKGY 118
Query: 132 AFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
AFVH E +++A+ A+ L+G + G L V L+K
Sbjct: 119 AFVHMETKEDALQAIEALHGTSFKGRPLSVELSK 152
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V NL T+E+L FE YG+V ++ +AFVH + A A+ ELNG+ G
Sbjct: 9 IFVGNLALDTTQEELSAIFEPYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREFRGR 68
Query: 158 TLEV 161
L V
Sbjct: 69 NLVV 72
>gi|297816558|ref|XP_002876162.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322000|gb|EFH52421.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 78 VDWADPQEEPDTETMS-KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRI 128
V WA+ + ++ + +VK LY++NL + T+E+LK FE +G++ +V K
Sbjct: 248 VSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKED 307
Query: 129 KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
Y FVH+ +R + A+ + G L+ +LAKP +D+K ++N ++ +Q
Sbjct: 308 SRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKANANTVQNVQKSQLQ 365
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 22/135 (16%)
Query: 47 LEYGLDKRIAGKL---DDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNL 103
LE D ++A K D+F GKH +I V WA+P EPD + M KVK +Y +
Sbjct: 462 LETNKDAQLAYKKLQKKDVF--GKHQ-----NIKVAWAEPLNEPDEDEMLKVKTVYAEYI 514
Query: 104 TQYCTEEKLKEAFEQYGRVE--------RVKRIKDYAFVHFEDRQEAITAMNELNGQTVA 155
EEK+++ F+++G +E R + KD+AFV + R+ A+ + + + +
Sbjct: 515 PSSWEEEKVRDCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESFSREPLH 574
Query: 156 GS----TLEVSLAKP 166
+ ++VSLAKP
Sbjct: 575 DAECKVKVKVSLAKP 589
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITA 145
+VK LY++NL + T+E+LK FE +G++ +V K Y FVH+ +R + A
Sbjct: 266 QVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRA 325
Query: 146 MNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
+ + G L+ +LAKP +D+K ++N ++ +Q
Sbjct: 326 LKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQ 366
>gi|255579369|ref|XP_002530529.1| RNA binding protein, putative [Ricinus communis]
gi|223529933|gb|EEF31861.1| RNA binding protein, putative [Ricinus communis]
Length = 127
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 8/89 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRV-------ERV-KRIKDYAFVHFEDRQEAITAMNEL 149
L+V L+ Y T++ L EAF QYG+V +RV R K + FV F EA A++E+
Sbjct: 33 LFVGGLSFYTTDKGLTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAHNALSEM 92
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
NG+T+ G + V AKP +D + + I R
Sbjct: 93 NGKTLNGRVIYVDYAKPRTDSRNEVPIAR 121
>gi|321458923|gb|EFX69983.1| hypothetical protein DAPPUDRAFT_328599 [Daphnia pulex]
Length = 134
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAM 146
P+ S +KV VRNL TEEKL+E FE +G ++RVK ++DYA+ E+R++A+ A+
Sbjct: 45 PEISIFSSLKVACVRNLPHDFTEEKLQEVFEVHGPIQRVKILEDYAYKRIENREDAVHAL 104
Query: 147 NELNGQTVAGSTLEVSL 163
+ L+G A +E+S+
Sbjct: 105 DALDG--YAKCEVEISV 119
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV------ 125
RG + V WADP+ D KVK +YV NL + TE L+ F QYG VERV
Sbjct: 255 RGHQVQVMWADPKR--DEIGTEKVKSIYVGNLPEQYTENDLRAIFSQYGTVERVTLLYMP 312
Query: 126 ---KRIKDYAFVHFEDRQEAITAMNELNG--QTVAGSTLEVSLAKP 166
++++Y F+++ DR A+ A++E + L V +AKP
Sbjct: 313 DDPTKLRNYTFINYTDRSSALRAVSEAENKKHIMTDKELIVHMAKP 358
>gi|119594959|gb|EAW74553.1| RNA binding motif protein 14, isoform CRA_b [Homo sapiens]
Length = 618
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|431910218|gb|ELK13291.1| RNA-binding protein 14 [Pteropus alecto]
Length = 664
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|357161949|ref|XP_003579258.1| PREDICTED: uncharacterized protein LOC100834061 [Brachypodium
distachyon]
Length = 668
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 12/115 (10%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER--VKRIKDY--AF 133
++WA+ + D M+K+K +V NL E+ LK+ F ++G V R V R +Y F
Sbjct: 233 INWAERESNVDAGEMAKIKTAFVGNLPANVNEDYLKKLFGRFGEVVRVAVSRKGEYPVGF 292
Query: 134 VHFEDRQEAITAMNELNGQTVAGST------LEVSLAKPP--SDKKKKEEILRNR 180
+HF R E A+ E++G+TV+G ++VS+A+P +D K+ E ++ R
Sbjct: 293 IHFGSRSELDNAIKEMDGKTVSGPDRGPAFKIQVSVARPAVENDNKRSREEVKTR 347
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
++V L + TE L+E F G + ++ +KD + FV F +R+ A TA + N
Sbjct: 72 VFVGGLPRSATEGTLREVFSPCGEIVDLRIMKDQNGVSKGFGFVRFAERECAYTAKRQKN 131
Query: 151 GQTVAGSTLEVSLA 164
G + G L V L+
Sbjct: 132 GIELQGKRLAVDLS 145
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITAMNELNGQTVA 155
+Y+ N+ Q +E L+ AF+++GR+ R+ + + +AFV F+ + A A+ ++NG +
Sbjct: 139 VYIGNVNQSVNDEDLRAAFDKFGRIVEVRIFKTQGFAFVRFDKKDSACNAIVKMNGTEIG 198
Query: 156 GSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAH 200
G T++ S + P ++ N QM G GP GA+
Sbjct: 199 GQTVKCSWGRTPEGHNNQQNAAANYN----QMQGAYGAYGPYGAY 239
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 69 LLSRGCDIIVDWA-DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR 127
LL R ++ V+WA +P + +T SK +++ +L+ + LK+AF +G V K
Sbjct: 6 LLDR--EMKVNWATEPGSQAKVDT-SKHFHVFIGDLSPEVDNKALKDAFAPFGEVSDAKV 62
Query: 128 IKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
I+D Y FV + R+EA A+ ++NGQ + T+ + A
Sbjct: 63 IRDSTTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 107
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WA P EPD +TMS+VK ++V + E ++E F +YG +ER+ + K
Sbjct: 215 VAWAQPLYEPDEDTMSQVKSVFVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRK 274
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
D+ FV++ +R A+T ++ LN + ++V + P
Sbjct: 275 DFGFVNYMERNAALTCIDALNNTEIIDGDMKVLFSWP 311
>gi|383415143|gb|AFH30785.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|53547|emb|CAA36322.1| 16 kDA protein [Mus musculus]
Length = 573
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A A+ +LNGQ V G
Sbjct: 80 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGQEVKGK 139
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 140 RINVELS 146
>gi|325182043|emb|CCA16496.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 193
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------- 130
V+ AD E D E + LYV NL TE +L + F ++GR+E+ + I D
Sbjct: 11 VNEADDNNEADQEISNPGNNLYVANLAHRVTETELNDLFAKFGRLEKCEVITDPISRESR 70
Query: 131 -YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
+AFV FED ++A A+ ELNG+ + G + V A+
Sbjct: 71 GFAFVTFEDVRDANDAVQELNGKDIQGRRIRVEHAR 106
>gi|395851689|ref|XP_003798385.1| PREDICTED: RNA-binding protein 14 [Otolemur garnettii]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>gi|197099062|ref|NP_001125363.1| RNA-binding protein 14 [Pongo abelii]
gi|73621448|sp|Q5RC41.1|RBM14_PONAB RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|55727832|emb|CAH90669.1| hypothetical protein [Pongo abelii]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|5454064|ref|NP_006319.1| RNA-binding protein 14 isoform 1 [Homo sapiens]
gi|402892710|ref|XP_003909552.1| PREDICTED: RNA-binding protein 14 [Papio anubis]
gi|426369329|ref|XP_004051645.1| PREDICTED: RNA-binding protein 14 isoform 1 [Gorilla gorilla
gorilla]
gi|73913750|sp|Q96PK6.2|RBM14_HUMAN RecName: Full=RNA-binding protein 14; AltName: Full=Paraspeckle
protein 2; Short=PSP2; AltName: Full=RNA-binding motif
protein 14; AltName: Full=RRM-containing coactivator
activator/modulator; AltName:
Full=Synaptotagmin-interacting protein;
Short=SYT-interacting protein
gi|3746787|gb|AAC64058.1| SYT interacting protein SIP [Homo sapiens]
gi|12653435|gb|AAH00488.1| RBM14 protein [Homo sapiens]
gi|119594958|gb|EAW74552.1| RNA binding motif protein 14, isoform CRA_a [Homo sapiens]
gi|167773197|gb|ABZ92033.1| RNA binding motif protein 14 [synthetic construct]
gi|193785611|dbj|BAG51046.1| unnamed protein product [Homo sapiens]
gi|355566267|gb|EHH22646.1| RNA-binding motif protein 14 [Macaca mulatta]
gi|380783623|gb|AFE63687.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
gi|384944744|gb|AFI35977.1| RNA-binding protein 14 isoform 1 [Macaca mulatta]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|403301165|ref|XP_003941269.1| PREDICTED: RNA-binding protein 14 [Saimiri boliviensis boliviensis]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>gi|346716308|ref|NP_001231150.1| RNA-binding protein 14 [Sus scrofa]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>gi|15022507|gb|AAK77961.1|AF315632_1 coactivator activator [Homo sapiens]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|296218875|ref|XP_002807420.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 14 [Callithrix
jacchus]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>gi|350539351|ref|NP_001233311.1| RNA-binding protein 14 [Pan troglodytes]
gi|397517055|ref|XP_003828735.1| PREDICTED: RNA-binding protein 14 isoform 1 [Pan paniscus]
gi|343958970|dbj|BAK63340.1| RNA-binding protein 14 [Pan troglodytes]
gi|410222928|gb|JAA08683.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410256128|gb|JAA16031.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410293820|gb|JAA25510.1| RNA binding motif protein 14 [Pan troglodytes]
gi|410339483|gb|JAA38688.1| RNA binding motif protein 14 [Pan troglodytes]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|345783055|ref|XP_852283.2| PREDICTED: RNA-binding protein 14 isoform 1 [Canis lupus
familiaris]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|348565065|ref|XP_003468324.1| PREDICTED: RNA-binding protein 14-like [Cavia porcellus]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|62897219|dbj|BAD96550.1| RNA binding motif protein 14 variant [Homo sapiens]
Length = 669
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|291385475|ref|XP_002709279.1| PREDICTED: RNA binding motif protein 14 [Oryctolagus cuniculus]
Length = 667
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 289 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 348
Query: 152 QTVAGSTLEVSLAKPPSDKKK---KEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGPP 208
+ V L V+LA+ D+K + + R RM QM Q G SG P L PP
Sbjct: 349 RIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPSGASGFFVPSL--PP 406
Query: 209 MPRGSVPLQ 217
PR P Q
Sbjct: 407 APRYYGPAQ 415
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVL---YVRNLTQYCTEEKLKEAFEQYGRVERV 125
+L G + V P++E + E K K+ YV+N + ++E LK+ FE+YGR+
Sbjct: 153 MLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSH 212
Query: 126 KRI-------KDYAFVHFEDRQEAITAMNELNG-QTVAGSTLEVSLAKPPSDKKKK 173
K + + + FV FED A A ELNG + V G L V A+ ++++K+
Sbjct: 213 KVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKE 268
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G I + W+ Q +P S V ++++NL + + L + F +G + K +D
Sbjct: 69 KGRPIRIMWS--QRDPSLRK-SGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVAQDE 125
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
Y FVHFE + A ++ ++NG + G + V P +++K+
Sbjct: 126 TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKE 174
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG---RVERVKRIK 129
G + VDWA+P+ D + M++VKVLY++N+ + T ++LK + +ER+ +
Sbjct: 187 GRKLYVDWAEPEPMVDPDVMTQVKVLYMKNVPTFWTLDRLKTYISKTVGEIFIERIYKRD 246
Query: 130 DYAFVHFEDRQEAITAMNELNG----QTVAGSTLEVSLAKPPSDKKKK 173
+YAF+HF++R A A+ + + G +EV A+P KK
Sbjct: 247 NYAFIHFDERSFAERALKIFDSVSQYLSFNGKQIEVEWARPSCYSKKN 294
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 68 HLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY---GRVER 124
+L G I VDWA+P + + + +V LY+ NL + E+LK + + +
Sbjct: 553 NLTIWGKPIFVDWAEPLPVVNPQILKQVTKLYLSNLPMTLSSEELKSFLCELLDPSHIIK 612
Query: 125 VKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
V +I ++AFVHF R+ A A +L G + + V A+P
Sbjct: 613 VHKINNFAFVHFTLRKYAEEAFRKLTGLVMMDKLIGVEWARP 654
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 19/118 (16%)
Query: 61 DIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG 120
D+F GKH +I V WA+P EPD + M KVK +Y + EEK+++ F+++G
Sbjct: 116 DVF--GKHQ-----NIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFG 168
Query: 121 RVE--------RVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS----TLEVSLAKP 166
+E R + KD+AFV + R+ A+ + + + + + ++VSLAKP
Sbjct: 169 EIESVVLARNLRSSKRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKP 226
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 75 DIIVDWADPQ--EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKD 130
+I VDWADP+ + D E M V L+VRNL+ +++K+++ F++ ++ ++K+I
Sbjct: 209 EIAVDWADPEPGDPIDEEIMESVTALFVRNLSLDMSQQKVRDIFQKNTKIPILKLKKINH 268
Query: 131 YAFVHFEDRQEAITAMNEL---NGQTVAGSTLEVSLAKP 166
+AFVH+E RQ A T M+ + NG E+ AKP
Sbjct: 269 FAFVHYESRQAAQTVMDIMTRSNG-IAEFEGWEIRWAKP 306
>gi|351710883|gb|EHB13802.1| RNA-binding protein 14 [Heterocephalus glaber]
Length = 669
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ M+ K+ +V +++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------MNTWKI-FVGDVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>gi|444510190|gb|ELV09525.1| RNA-binding protein 14 [Tupaia chinensis]
Length = 669
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELHSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>gi|297267337|ref|XP_001109416.2| PREDICTED: RNA-binding protein 4 isoform 5 [Macaca mulatta]
Length = 693
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 14 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 66
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 67 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 115
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 16 FVNVRKFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKT 65
V + K + REA E+ Y K+LE YG DK A +D +
Sbjct: 327 LVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRN 383
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
H G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V
Sbjct: 384 LHHYKLHGVNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIEC 436
Query: 126 KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+KDYAFVH E ++A+ A+ L+ G + V L+
Sbjct: 437 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 475
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 35 PSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSK 94
P P + L YG A L+ G L S G A Q + +
Sbjct: 272 PYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGA--QAASSYGALVR 329
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV 154
+ L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ +
Sbjct: 330 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 389
Query: 155 AGSTLEVSLAKPPSDKKKKEEI 176
G + V +K S K +
Sbjct: 390 HGVNINVEASKNKSKTSTKLHV 411
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG---RVERVKRIK 129
G + VDWA+P+ D + M++VKVLY++N+ + T ++LK + +ER+ +
Sbjct: 187 GRKLYVDWAEPEPMVDPDVMTQVKVLYMKNVPTFWTLDRLKTYISKTVGEIFIERIYKRD 246
Query: 130 DYAFVHFEDRQEAITAMNELNG----QTVAGSTLEVSLAKPPSDKKK 172
+YAF+HF++R A A+ + + G +EV A+P KK
Sbjct: 247 NYAFIHFDERSFAERALKIFDSVSQYLSFNGKQIEVEWARPSCYSKK 293
>gi|417403347|gb|JAA48481.1| Putative rna-binding protein lark [Desmodus rotundus]
Length = 616
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 17/141 (12%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LE D R+A K + K+ +G +I V WA+P +PD + M +VK ++V +
Sbjct: 367 LETSRDARMAYKK----LSQKNAFGKGLNIRVAWAEPLNDPDEKDM-QVKSIFVDGIPTS 421
Query: 107 CTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITAMNELNGQTVA--G 156
+LKE F+++G++E V + +D+AF+++ R+ AI+ + + + + G
Sbjct: 422 WDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEEFSKNG 481
Query: 157 S--TLEVSLAKPPSDKKKKEE 175
S ++VSLAKP K+ +E
Sbjct: 482 SKVNIKVSLAKPAQQSKQTKE 502
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 17/141 (12%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LE D R+A K + K+ +G +I V WA+P +PD + M +VK ++V +
Sbjct: 367 LETSRDARMAYKK----LSQKNAFGKGLNIRVAWAEPLNDPDEKDM-QVKSIFVDGIPTS 421
Query: 107 CTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITAMNELNGQTVA--G 156
+LKE F+++G++E V + +D+AF+++ R+ AI+ + + + + G
Sbjct: 422 WDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEEFSKNG 481
Query: 157 S--TLEVSLAKPPSDKKKKEE 175
S ++VSLAKP K+ +E
Sbjct: 482 SKVNIKVSLAKPAQQSKQTKE 502
>gi|74139976|dbj|BAE31823.1| unnamed protein product [Mus musculus]
Length = 636
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>gi|149061998|gb|EDM12421.1| rCG48334, isoform CRA_f [Rattus norvegicus]
Length = 614
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAITAMN 147
VK LYV+N+ + T E+LKE F ++G V +V +D+ F+H+ +R A+ A+
Sbjct: 359 VKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVK 418
Query: 148 ELNGQTVAGSTLEVSLAKPPSDKK 171
E + G LEV +AKP ++KK
Sbjct: 419 ETEKYEIDGQALEVVIAKPQAEKK 442
>gi|16307494|gb|AAH10294.1| Rbm14 protein [Mus musculus]
Length = 618
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>gi|148701115|gb|EDL33062.1| mCG8382, isoform CRA_c [Mus musculus]
Length = 614
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 20/112 (17%)
Query: 78 VDWADPQEEPDT------------ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
VD++ P+++PD + + L++ NL+ CT + ++E F +YG + RV
Sbjct: 307 VDFSTPRQKPDAGKTNDRANKYGDKRSAPSNTLFLGNLSFDCTNDSIQEIFAEYGNITRV 366
Query: 126 K--------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169
IK + +V F ++EA A++ LNGQ +AG + + A P D
Sbjct: 367 SLPTDRDTGSIKGFGYVDFGSQEEATAALDALNGQDIAGRNIRIDYAAPRED 418
>gi|170057401|ref|XP_001864467.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876865|gb|EDS40248.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 741
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 75 DIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE------RVKRI 128
DI + WA+PQ D +VK L+VRN+ + KE + + RV ++ R+
Sbjct: 267 DIKIVWANPQRALDHSNADEVKTLFVRNVD---LQVSTKELYMLFSRVVDRQDIVKISRV 323
Query: 129 KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167
+++AFV F R A AM+ + G + G TL++ A PP
Sbjct: 324 REFAFVEFTRRFHAAFAMHAVQGFQLNGYTLDIEWAMPP 362
>gi|404501516|ref|NP_596879.1| RNA-binding protein 14 [Rattus norvegicus]
gi|392338034|ref|XP_003753424.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
gi|392344818|ref|XP_003749082.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
gi|149061997|gb|EDM12420.1| rCG48334, isoform CRA_e [Rattus norvegicus]
Length = 669
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>gi|62460492|ref|NP_001014901.1| RNA-binding protein 14 [Bos taurus]
gi|73621446|sp|Q5EA36.1|RBM14_BOVIN RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|59857831|gb|AAX08750.1| RNA binding motif protein 14 [Bos taurus]
Length = 669
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>gi|296471614|tpg|DAA13729.1| TPA: RNA-binding protein 14 [Bos taurus]
Length = 669
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>gi|159164257|pdb|2DNP|A Chain A, Solution Structure Of Rna Binding Domain 2 In Rna-Binding
Protein 14
Length = 90
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A A+ +LNG+ V G
Sbjct: 12 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGK 71
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 72 RINVELS 78
>gi|301784863|ref|XP_002927842.1| PREDICTED: RNA-binding protein 14-like [Ailuropoda melanoleuca]
gi|281346285|gb|EFB21869.1| hypothetical protein PANDA_017685 [Ailuropoda melanoleuca]
Length = 669
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>gi|354496138|ref|XP_003510184.1| PREDICTED: RNA-binding protein 14 [Cricetulus griseus]
Length = 669
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 14/143 (9%)
Query: 75 DIIVDWADPQ--EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKD 130
+I VDWADP+ + D E M V L+VRNL+ ++K+++ F++ ++ ++K+I
Sbjct: 200 EIAVDWADPEPGDPIDEEVMENVTALFVRNLSLNMPQQKIRDIFQKNTKIPILKLKKINH 259
Query: 131 YAFVHFEDRQEAITAMNEL---NGQTVAGSTLEVSLAKPPSDKKKKE------EILRNRE 181
+AFVH+E+R+ A + M+ + NG E+ AKP K E E L N
Sbjct: 260 FAFVHYENRKAAQSVMDIMTRHNG-VAEAEGWEIRWAKPIGATKVLERQRCINEALANAN 318
Query: 182 RRMMQMMQGRGGPGPSGAHAPLL 204
R ++ + P H ++
Sbjct: 319 SRNLEASYVKRAPVKKSDHKNIV 341
>gi|86262142|ref|NP_063922.2| RNA-binding protein 14 [Mus musculus]
gi|73621447|sp|Q8C2Q3.1|RBM14_MOUSE RecName: Full=RNA-binding protein 14; AltName: Full=RNA-binding
motif protein 14
gi|26353152|dbj|BAC40206.1| unnamed protein product [Mus musculus]
gi|74195530|dbj|BAE39579.1| unnamed protein product [Mus musculus]
gi|148701118|gb|EDL33065.1| mCG8382, isoform CRA_e [Mus musculus]
Length = 669
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 91 TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAI 143
T S+ L+V+NL +EKLKE F+ +G + VK + K + FV F +EA
Sbjct: 339 TKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEAS 398
Query: 144 TAMNELNGQTVAGSTLEVSLAKPPSDKKKK--EEILRNRERRMMQMMQGRGGPG------ 195
A++E+N +AG L V+LA+ ++ + ++I + R+ Q G PG
Sbjct: 399 RAISEMNQHMLAGKPLYVALAQRKDVRRSQLEQQIQARNQLRLQQAAAAGGLPGQFIPTP 458
Query: 196 ----------PSGAHAPLLTGP---PMPRGSVPLQAALSSTRMGR 227
P GA PL P P P +P QAA GR
Sbjct: 459 FIYGQQPQFLPPGARGPLPNQPFLIPRPGQGLPPQAAGGQWVGGR 503
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEA 142
E + +YV+N+ +EE++KE F +G V KD +AFV++E+ + A
Sbjct: 235 EVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAA 294
Query: 143 ITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
+ ++ LN Q G L V A+ S++ KK+ E R
Sbjct: 295 VKSIESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAAR 334
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
++++NL + L + F +GR+ K D + FVHFE + A A+ +N
Sbjct: 150 VFIKNLHPAIDNKALHDTFSAFGRILSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVN 209
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK-EEILRN 179
G + + + V D++ K EE++++
Sbjct: 210 GMLLNNNEVYVGPHVARRDRQSKLEEVIKS 239
>gi|169623995|ref|XP_001805404.1| hypothetical protein SNOG_15247 [Phaeosphaeria nodorum SN15]
gi|111056352|gb|EAT77472.1| hypothetical protein SNOG_15247 [Phaeosphaeria nodorum SN15]
Length = 451
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 19/119 (15%)
Query: 68 HLLSRGCDIIVDWADPQEEPDTETMSK---------VKVLYVRNLTQYCTEEKLKEAFEQ 118
L RG + VD++ P+E+PD + L++ NL+ C+ E ++E F++
Sbjct: 263 ELDGRGLN--VDFSTPREKPDQSARANKYGDKRSAPANTLFLGNLSFDCSNEGIQEIFQE 320
Query: 119 YGRVERVK--------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169
YG + RV +K + +V F +EA A+ LNGQ V G + + A P +D
Sbjct: 321 YGNITRVSLPTDRDTGSLKGFGYVDFGTVEEATAALEALNGQEVEGRAIRIDYAAPRAD 379
>gi|440899388|gb|ELR50691.1| RNA-binding protein 14 [Bos grunniens mutus]
Length = 669
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRRL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL + +E+L++ F Q+G + + R K + FV F +EA A+ E+NG
Sbjct: 297 LYVKNLDEQIDDERLRKEFSQFGTITSARVMTEGGRTKGFGFVCFSSPEEATKAVTEMNG 356
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQM-MQGRG-----GPGPSGAHAPLLT 205
+ V L V+LA+ D+K + +R+ M MQG+G GPG +G P +
Sbjct: 357 RIVVAKPLYVALAQRKEDRKA--HLAAQYMQRIAGMRMQGQGVNQIFGPGGTGYFVPTMA 414
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAM 146
K +YV+NL + ++KL+E FE +G++ K + + + FV F+D + A A+
Sbjct: 190 KFTNVYVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAV 249
Query: 147 NELNGQTVAGSTLEVSLAKPPSDKKK--KEEILRNRERRM 184
ELN + V G + V A+ ++++ KE+ R + R+
Sbjct: 250 EELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMKMERI 289
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G I + W+ Q +P S V ++++NL + + L + F +G + K D
Sbjct: 79 KGRPIRIMWS--QRDPSLRK-SGVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQ 135
Query: 131 -----YAFVHFEDRQEAITAMNELNGQTVAGSTLEV 161
Y FVHFE + A ++ ++NG + G + V
Sbjct: 136 NGSLGYGFVHFETEEAARNSIEKVNGMLLNGKKVFV 171
>gi|410974606|ref|XP_003993734.1| PREDICTED: RNA-binding protein 14 isoform 1 [Felis catus]
Length = 669
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
F+Q G+V I DYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FDQRGKVYVCTLISDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|149060435|gb|EDM11149.1| rCG52575 [Rattus norvegicus]
Length = 95
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WA E ++KVKVL V L TEE L+ F Q+G +E+VK++K YAF HFE
Sbjct: 16 VEWAGSI--VYAEVIAKVKVLLVGYLANNVTEEILETLFIQFGELEQVKKLKHYAFRHFE 73
Query: 138 DRQEAITAMNELNGQ 152
+ + AM E+N +
Sbjct: 74 AQDSVVKAMEEMNAK 88
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 17/141 (12%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LE D R+A K + K+ +G +I V WA+P +PD + M +VK ++V +
Sbjct: 141 LETSRDARMAYKK----LSQKNAFGKGLNIRVAWAEPLNDPDEKDM-QVKSIFVDGIPTS 195
Query: 107 CTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITAMNELNGQTVA--G 156
+LKE F+++G++E V + +D+AF+++ R+ AI+ + + + + G
Sbjct: 196 WDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEEFSKNG 255
Query: 157 S--TLEVSLAKPPSDKKKKEE 175
S ++VSLAKP K+ +E
Sbjct: 256 SKVNIKVSLAKPAQQSKQTKE 276
>gi|189203851|ref|XP_001938261.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985360|gb|EDU50848.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 475
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVK-----------VLYVRNLTQYCTEEKLKEAFEQYGR 121
G + VD++ P+ +PD ++ L++ N++ C+ E ++E F +YG
Sbjct: 289 GRQLNVDFSTPRAKPDANGGARANKYGDKRSPPSNTLFLGNVSFECSNESIQEVFAEYGS 348
Query: 122 VERVK--------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169
+ RV +K + +V F +QEA A+ LNGQ + G + + A P D
Sbjct: 349 ITRVSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQDIGGRAIRIDYATPRED 404
>gi|311771525|ref|NP_001185765.1| RNA-binding protein 14 isoform 2 [Homo sapiens]
gi|345783057|ref|XP_003432362.1| PREDICTED: RNA-binding protein 14 [Canis lupus familiaris]
gi|397517057|ref|XP_003828736.1| PREDICTED: RNA-binding protein 14 isoform 2 [Pan paniscus]
gi|426369331|ref|XP_004051646.1| PREDICTED: RNA-binding protein 14 isoform 2 [Gorilla gorilla
gorilla]
gi|15022509|gb|AAK77962.1|AF315633_1 coactivator modulator [Homo sapiens]
Length = 156
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPR------PLNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|330928516|ref|XP_003302299.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
gi|311322459|gb|EFQ89618.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
Length = 403
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVK-----------VLYVRNLTQYCTEEKLKEAFEQYGR 121
G + VD++ P+ +PD ++ L++ N++ C+ E ++E F +YG
Sbjct: 285 GRQLNVDFSTPRAKPDANGGARANKYGDKRSPPSNTLFLGNVSFECSNESIQEVFAEYGS 344
Query: 122 VERVK--------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169
+ RV +K + +V F +QEA A+ LNGQ + G + + A P D
Sbjct: 345 ITRVSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQDIGGRAIRIDYATPRED 400
>gi|153874940|ref|ZP_02002958.1| RNA-binding protein [Beggiatoa sp. PS]
gi|152068596|gb|EDN67042.1| RNA-binding protein [Beggiatoa sp. PS]
Length = 89
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+YV NL+ TEE+LKE F +YG + V I D +AFV + +A TA+ EL
Sbjct: 3 IYVGNLSYSMTEEELKEIFTEYGEISTVNLITDKYTGQSKGFAFVEMVKQADAETAIKEL 62
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKK 173
NG+T+ G +++V+ A+P +K ++
Sbjct: 63 NGKTIKGMSIKVNQARPRGEKPRR 86
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 75 DIIVDWADPQ--EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKD 130
+I VDWADP+ + D E M V L+VRNL+ ++K+++ F++ ++ ++K+I
Sbjct: 211 EIAVDWADPEPGDPIDEEVMENVTALFVRNLSLNMPQQKIRDIFQKNTKIPILKLKKINH 270
Query: 131 YAFVHFEDRQEAITAMNEL---NGQTVAGSTLEVSLAKP 166
+AFVH+E+R+ A M+ + NG E+ AKP
Sbjct: 271 FAFVHYENRKAAQNVMDIMTRHNG-VAEAEGWEIRWAKP 308
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 25/136 (18%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++NL +EKL++ F YG + K + D + FV F EA A+ E+N
Sbjct: 330 LYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAVTEMN 389
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNR------ERRMMQMMQGRGGPGPSG--AHAP 202
G+ + + V+LA +++EI R++ +R M+M QG PG G AP
Sbjct: 390 GRMIGSKPIYVALA-------QRKEIRRSQLEAQMAQRNQMRMQQGMPMPGAPGYMPGAP 442
Query: 203 LLTGPP---MPRGSVP 215
+ PP MP+G P
Sbjct: 443 MFYAPPGQFMPQGQRP 458
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAITA 145
+K +YV+NL + +E+ E ++G + + K + FV+FE+ ++A A
Sbjct: 222 AKFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKA 281
Query: 146 MNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
++ LN G L V+ A+ K ++EE LR
Sbjct: 282 VDALNETEHKGKILYVARAQ---KKTEREEELR 311
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 68 HLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK- 126
+ L +G + W+ Q +P V +++NL + L + F +G + K
Sbjct: 107 YTLIKGKPCRIMWS--QRDPSLRKTGSGNV-FIKNLDPSIDNKALHDTFSAFGNILSCKI 163
Query: 127 ------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
K Y FVH+E + A A+ +NG + + V P +++ K E R +
Sbjct: 164 ALDESGNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHVPKKERQAKIEQFRAK 223
>gi|189218303|ref|YP_001938945.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
gi|189185161|gb|ACD82346.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
Length = 143
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV NL +E L+E FEQYG+V + I D +AFV E Q A +A+N L
Sbjct: 49 LYVGNLPFRISENDLREIFEQYGQVNEINLIVDKMTGQSRGFAFVTMESSQAAQSAINNL 108
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
NG +V+G + V+ AKP ++ + R RR
Sbjct: 109 NGSSVSGRQIVVNEAKPREERPHRHRENSGRSRR 142
>gi|317152646|ref|YP_004120694.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942897|gb|ADU61948.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
Length = 87
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAM 146
K LYV NL CTEE+L+ AFE YG V VK + D + FV D Q A+ A+
Sbjct: 2 AKNLYVGNLPWNCTEEELRAAFEAYGEVRSVKLVNDHETDRPRGFGFVEMGD-QGALEAV 60
Query: 147 NELNGQTVAGSTLEVSLAKP 166
LNG ++ G +++V+ A+P
Sbjct: 61 ENLNGSSLGGRSIKVNEARP 80
>gi|87578307|gb|AAI13268.1| RBM14 protein [Bos taurus]
Length = 156
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A A+ +LNG+ V G
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGK 140
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 141 RINVELS 147
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++NL +EKL++ F YG + K + D + FV F EA A+ E+N
Sbjct: 325 LYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMN 384
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAH--APLLTGPP 208
G+ + + V+LA+ ++ + E + +R M+M QG PG G AP+ PP
Sbjct: 385 GRMIGSKPIYVALAQRKEVRRSQLEA-QMAQRNQMRMQQGMPMPGAPGYMPGAPMFYAPP 443
Query: 209 ---MPRGSVP 215
MP+G P
Sbjct: 444 GQFMPQGQRP 453
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYG-------RVERVKRIKDYAFVHFEDRQEAITA 145
+K +YV+NL + +E+ KE F ++G + + + K + F++FE+ ++A A
Sbjct: 217 AKFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKA 276
Query: 146 MNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
++ LN G TL V+ A+ K ++EE LR
Sbjct: 277 VDTLNETEHNGKTLYVARAQ---KKTEREEELR 306
>gi|332249851|ref|XP_003274067.1| PREDICTED: RNA-binding protein 14, partial [Nomascus leucogenys]
Length = 617
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N++ CT ++L+ FE+ GRV +KDYAFVH E +A A+ +LNG+ V G
Sbjct: 30 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGK 89
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 90 RINVELS 96
>gi|383850788|ref|XP_003700956.1| PREDICTED: APOBEC1 complementation factor-like [Megachile
rotundata]
Length = 479
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 8/99 (8%)
Query: 75 DIIVDWADPQ--EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKD 130
+I VDWADP+ + D + M V L+VRNL+ ++K++E F++ ++ ++K+I
Sbjct: 215 EIAVDWADPEPGDPIDEDVMENVTALFVRNLSLDVQQQKIREIFQKSTKIPILKLKKINH 274
Query: 131 YAFVHFEDRQEAITAMNEL---NGQTVAGSTLEVSLAKP 166
+AF+H+E RQ A M+ + NG E+ AKP
Sbjct: 275 FAFIHYESRQAAQAVMDIMTKPNG-VAEKEGWEIRWAKP 312
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 84 QEEPDTETMSKVK--VLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFV 134
E+ E M K + LYV+NL + +E LK+ FE +G + K R K + FV
Sbjct: 15 HEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFV 74
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
FE +EA TA+ E+N + V L V+LA+ D++ ++ +R+ M P
Sbjct: 75 CFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRA--QLASQYMQRLASMRMHSNVP 132
Query: 195 GPSGAHAPLLTGP 207
G G + P TGP
Sbjct: 133 G-GGMYNPAQTGP 144
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY-------AFVHFEDRQEAITAMNELN 150
LY++NL +EKL+E F+++G + + ++D AFV F EA A+ E+N
Sbjct: 320 LYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMN 379
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPG--------PSGAHAP 202
G+ V L V+LA ++KEE + + Q M G G PG P AP
Sbjct: 380 GKMVGAKPLYVALA------QRKEERRMRLQAQFAQRMPGAGMPGGMAPYMPPPGVPGAP 433
Query: 203 LLTGPPMPRG 212
+ G P P G
Sbjct: 434 MYYGQPPPAG 443
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITA 145
+K +YV+NL++ ++EKL+E F ++G V ++D + FV +E+ + A A
Sbjct: 212 AKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAA 271
Query: 146 MNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERR-MMQMMQG 190
+ +L+G T T V A+ ++++ + + ++ERR M+ M G
Sbjct: 272 VEKLDGYTEDEKTWVVCRAQKKAEREAELKAKFDQERRERMEKMAG 317
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV +L TE +L E F G V ++ +D YA+V+F+ +A A++ L
Sbjct: 39 LYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAIDVL 98
Query: 150 NGQTVAGSTLEV 161
N Q + G + V
Sbjct: 99 NFQVINGKPIRV 110
>gi|12836486|dbj|BAB23678.1| unnamed protein product [Mus musculus]
Length = 669
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEAYAKAAIAQLNGKGVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>gi|326427350|gb|EGD72920.1| hypothetical protein PTSG_04652 [Salpingoeca sp. ATCC 50818]
Length = 976
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 60 DDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY 119
D F G+ +L C VD + P +T + ++V+ L CTE+ ++ FEQY
Sbjct: 750 DRQFMNGRPVLVDPC---VDRSKTALRPKHQTGFDPRTVFVKRLDHSCTEQDVRTLFEQY 806
Query: 120 GRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
G V+ V+ + + +A+V FE ++A TA+ L+ G L+V+L+ PPS
Sbjct: 807 GAVKEVRMVTTLAGKPRGFAYVEFEASRDAATAIMNLDKAEFKGRQLQVALSNPPS 862
>gi|325181594|emb|CCA16044.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325191994|emb|CCA26461.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 236
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV NL T+E+L++ FE++GR+E+ + I D +AFV FED ++A A+ EL
Sbjct: 76 LYVANLAHRVTDEELRQLFEKFGRLEKCEIIIDPISRESRGFAFVTFEDVRDASDAVQEL 135
Query: 150 NGQTVAGSTLEVSLAK 165
NG+ + G + V AK
Sbjct: 136 NGKDIQGRRMRVEHAK 151
>gi|91202563|emb|CAJ72202.1| rna binding protein [Candidatus Kuenenia stuttgartiensis]
Length = 126
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+Y NL + TEE+LK+ FE++G+V V IKD + FV R EA A++ L
Sbjct: 3 IYAGNLARQTTEEELKQVFEEFGQVTSVTIIKDKFSGESRGFGFVEMPSRAEAQAALDSL 62
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKK 173
NG+ + G L V+ A P +D +K+
Sbjct: 63 NGKDLNGRVLNVNEALPRTDDRKQ 86
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
+ WA P EPD + MS+VK ++V + E K+KE F +YG VER+ + K
Sbjct: 177 IAWAQPLNEPDEDIMSQVKSVFVDGMPPTWDERKVKELFNKYGAVERIVLARNMLSAKRK 236
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEV 161
D+ FV++ +R A+ ++ LN ++ ++V
Sbjct: 237 DFGFVNYVERDAALLCIDALNNTEISYEDIKV 268
>gi|449446458|ref|XP_004140988.1| PREDICTED: uncharacterized protein LOC101208465 [Cucumis sativus]
Length = 394
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Query: 82 DPQEEPDTE-----TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------ 130
+P + PD+ T K K L++ L+ Y +E+ L+ AFE +G++ VK I D
Sbjct: 287 NPSDLPDSSGTHQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRS 346
Query: 131 --YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFV + + A A+ E+NG+ + G + V +AKP
Sbjct: 347 KGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDIAKP 384
>gi|116779573|gb|ABK21345.1| unknown [Picea sitchensis]
gi|224285462|gb|ACN40453.1| unknown [Picea sitchensis]
Length = 198
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
L+V L+ Y TE L+ AF YG+V V+ R K + FV F +EA TA+ E+
Sbjct: 90 LFVTGLSIYTTERTLQNAFSNYGKVVDVRIIMNKTTRRSKGFGFVEFSTEEEANTALKEM 149
Query: 150 NGQTVAGSTLEVSLAKP 166
NG+ + G + V +AKP
Sbjct: 150 NGKILNGWLISVDIAKP 166
>gi|2078531|gb|AAC53171.1| Mlark [Mus musculus]
Length = 367
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|226372036|gb|ACO51643.1| RNA-binding protein 4B [Rana catesbeiana]
Length = 328
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V +L+ CT ++L+E FE+YG V +KDYAFVH E +EA+ A+ LN G
Sbjct: 80 LHVSSLSTDCTGDELREKFEEYGGVLECDIVKDYAFVHMEKAEEALEAIRNLNNLEFKGK 139
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 140 KMHVQLS 146
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL T+ +LK FEQ+G+V I +YAFVH ED++ A A+N LN + G
Sbjct: 4 LFVGNLPPAATQTELKSLFEQFGKVSECDIITNYAFVHMEDKKSADEAVNNLNQCKLHGV 63
Query: 158 TLEV--SLAKPPSDKK 171
++ V S KP + K
Sbjct: 64 SINVEHSRGKPRASTK 79
>gi|327290511|ref|XP_003229966.1| PREDICTED: RNA-binding protein 14-like [Anolis carolinensis]
Length = 607
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK 129
L G ++V+ + P+ T T+ ++V N++ CT +L+ F+++G V +K
Sbjct: 64 LVHGHRVVVEHSRPRP---THTVK----IFVGNVSATCTSGELRALFQEFGPVVECDTVK 116
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
DYAFVH E ++A A+ LNG+ V G + V L+
Sbjct: 117 DYAFVHMEKDEDAAAAIEHLNGREVKGRRINVELSN 152
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITAMNELNGQ 152
VKV +V N+ + ++ +L++ F+ G V +V +K +AFVH D A A+ +LNGQ
Sbjct: 5 VKV-FVGNVPEETSQVELRDLFQAVEPGAVLKVALMKQFAFVHLRDEAAADRAIAKLNGQ 63
Query: 153 TVAGSTLEVSLAKP 166
V G + V ++P
Sbjct: 64 LVHGHRVVVEHSRP 77
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V WA P EPD +TMS+VK ++V + E ++E F +YG +ER+ + K
Sbjct: 211 VAWAQPLYEPDEDTMSQVKSVFVDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRK 270
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
D+ FV+F +R A+ ++ LN + ++V +
Sbjct: 271 DFGFVNFVERDAALACIDALNNTEIIDGDIKVPFS 305
>gi|45361253|ref|NP_989204.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|38648979|gb|AAH63354.1| RNA binding motif protein 4B [Xenopus (Silurana) tropicalis]
gi|89272511|emb|CAJ82586.1| RNA binding motif protein 4 [ [Xenopus (Silurana) tropicalis]
Length = 338
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL+ CT E+L+ FE+YG V +KDYAFVH E EA+ A+ L+ G
Sbjct: 80 LHVSNLSTSCTSEELRAKFEEYGAVLECDIVKDYAFVHMERSAEALDAIKNLDNTEFKGK 139
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 140 RMHVQLS 146
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL T+ +LK FEQ+GRV IK+Y FVH EDR+ A A++ LN +
Sbjct: 4 LFVGNLPPEATQSELKSLFEQFGRVTECDIIKNYGFVHMEDRKAADEAVHNLNHYKLHSV 63
Query: 158 TLEV--SLAKPPSDKK 171
+ V S KP + K
Sbjct: 64 PINVEHSRGKPKASTK 79
>gi|334347620|ref|XP_001379260.2| PREDICTED: RNA-binding protein 14 [Monodelphis domestica]
Length = 636
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAG 156
++V N++ CT ++L+ FE++G V +KDYAFVH E +A A+ +LNG+ V G
Sbjct: 41 FIFVGNVSAACTSQELRSLFERHGPVIECDVVKDYAFVHMEKEADAKAAIEQLNGKEVKG 100
Query: 157 STLEVSLA 164
+ V L+
Sbjct: 101 KRINVELS 108
>gi|2078529|gb|AAC51293.1| Hlark [Homo sapiens]
Length = 366
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 84 QEEPDTETMSKVK--VLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFV 134
E+ E M K + LYV+NL + +E LK+ FE +G + K R K + FV
Sbjct: 303 HEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFV 362
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
FE +EA TA++E+N + V L V+LA+ D++ ++ +R+ M P
Sbjct: 363 CFEKPEEATTAVSEMNSKMVCSKPLYVALAQRKEDRRA--QLASQYMQRLASMRMHTNVP 420
Query: 195 GPSGAHAPLLTGP 207
G G ++P GP
Sbjct: 421 G-GGMYSPAQPGP 432
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
++++NL + + + + F +G + K K Y FVHFE + A A+ ++N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVN 181
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK 173
G +AG + V +P + + ++
Sbjct: 182 GMLLAGKKVFVGKFQPRAQRNRE 204
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAI 143
ET K +YV+N ++ ++ L++ F +YG + + K + FV F + +EA
Sbjct: 207 ETAKKFTNVYVKNFGEHYNKDTLEKLFAKYGTITSCDVMTSEGKSKGFGFVAFAEPEEAE 266
Query: 144 TAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
A+ LN V GS L++ + + ++ E+ + E+ ++ MQ
Sbjct: 267 AAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQ 312
>gi|147901982|ref|NP_001087983.1| RNA binding motif protein 4B [Xenopus laevis]
gi|52139141|gb|AAH82645.1| LOC494668 protein [Xenopus laevis]
Length = 336
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL+ CT E+L+ FE+YG V +KDYAFVH E EA+ A+ L+ G
Sbjct: 80 LHVSNLSSSCTSEELRAKFEEYGAVLECDIVKDYAFVHMEISAEALDAIKNLDNTEFKGK 139
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 140 RMHVQLS 146
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL T+ +LK FEQ+GRV IK+Y FVH +D++ A A+ LN +
Sbjct: 4 LFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDKKAADEAVRNLNHYKLHNV 63
Query: 158 TLEV--SLAKPPSDKK 171
++ V S KP + K
Sbjct: 64 SINVEHSRGKPNASTK 79
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 8/83 (9%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KR 127
+ V +++P +EPD E M+KVK +++ L Y E+++++ F+ YG +ERV +
Sbjct: 310 VKVAFSEPLQEPDPEIMAKVKSVFIDGLPPYWDEDRVRKHFQGYGEIERVTLARNMPAAK 369
Query: 128 IKDYAFVHFEDRQEAITAMNELN 150
KD+ FV F + AI ++++N
Sbjct: 370 RKDFGFVDFLTHEAAIACIDDIN 392
>gi|449525960|ref|XP_004169984.1| PREDICTED: uncharacterized LOC101208465 [Cucumis sativus]
Length = 394
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Query: 82 DPQEEPDTE-----TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------ 130
+P + PD+ T K K L++ L+ Y +E+ L+ AFE +G++ VK I D
Sbjct: 287 NPLDLPDSSGTHQTTPVKTKKLFITGLSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRS 346
Query: 131 --YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFV + + A A+ E+NG+ + G + V +AKP
Sbjct: 347 KGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDIAKP 384
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP------GPSGAHAPLLT 205
+ + L V+LA+ K++++ IL N+ + + M+ GGP P+ P +
Sbjct: 356 RIIGTKPLYVALAQ---RKEERKAILTNQYMQRLSTMRALGGPFLGSFQQPTSYFLPAMA 412
Query: 206 GPP 208
PP
Sbjct: 413 QPP 415
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL + E L++ F Q+G++ VK ++D + FV+FE +EA A+ ++N
Sbjct: 193 IYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 151 GQTVAGSTLEVSLAK 165
G V+G L V A+
Sbjct: 253 GMQVSGRLLYVGRAQ 267
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 75 DIIVDWADPQ--EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKD 130
+I VDWADP+ + D + M V L+VRNL+ ++K+KE ++ V ++K+I
Sbjct: 198 EIAVDWADPEPGDPVDEDIMETVTALFVRNLSIDMPQQKVKEIIYRHTNVPILKLKKINH 257
Query: 131 YAFVHFEDRQEAITAMNELN--GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMM 188
+AF+H+E R+ A T M+ + V EV AKP K E RER + + +
Sbjct: 258 FAFIHYESREAAQTVMDIMQKPDSIVEQQGWEVRWAKPIGASKVLE-----RERYIREAV 312
Query: 189 QGRG 192
G
Sbjct: 313 SNSG 316
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHF 136
+ P+T+ + + V Y L Q TEE LK+ F Q+G V K IKD Y FV++
Sbjct: 16 QNPETKAKTNLIVNY---LPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVNY 72
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
+EA A+ ++NG T+ TL+VS A+P S K +
Sbjct: 73 GSAEEAEHAIQKMNGTTLESKTLKVSYARPSSVAIKNANV 112
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNE 148
++V NL + C + L + F +G + V I+D Y FV+ + ++A +A+
Sbjct: 313 CVFVYNLPETCQDFLLYQLFSPFGAITSVNVIRDLKSGLCKRYGFVNMKSYEDACSAIMT 372
Query: 149 LNGQTVAGSTLEVSL 163
LNG G TL+VS
Sbjct: 373 LNGYVHDGKTLQVSF 387
>gi|392344877|ref|XP_003749100.1| PREDICTED: RNA-binding protein 14-like [Rattus norvegicus]
Length = 404
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 20/141 (14%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTL 159
++A+ A+ L+ G +L
Sbjct: 121 AEDAVEAIRGLDNTEFQGESL 141
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP------GPSGAHAPLLT 205
+ V L V+LA+ K++++ IL N+ + + M+ GGP P+ P +
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVP 412
Query: 206 GPP 208
PP
Sbjct: 413 QPP 415
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E++L++ F Q+G++ VK ++D + FV+FE +EA A+ +N
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A +K+ E +RR QM Q R
Sbjct: 253 GREVSGRLLYVGRA------QKRVERQNELKRRFEQMKQDR 287
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAP---LLTGPP 208
+ + L V+LA+ K++++ IL N+ + + ++ GGP H P L P
Sbjct: 356 RILGTKPLYVALAQ---RKEERKAILTNQYMQRLSTVRALGGPLLGSFHQPTSYFLPSVP 412
Query: 209 MPRGSVPLQAALSST 223
P P QAA ++
Sbjct: 413 QP----PAQAAYYAS 423
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E+ L++ F ++G++ VK ++D + FV+F+ +EA A+ ++N
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A +K+ E +RR Q+ Q R
Sbjct: 253 GKEVSGRLLYVGRA------QKRVERQSELKRRFEQLKQDR 287
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP------GPSGAHAPLLT 205
+ V L V+LA+ K++++ IL N+ + + M+ GGP P+ P +
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYMQRLSTMRALGGPVLGSFQQPASYFLPAVP 412
Query: 206 GPP 208
PP
Sbjct: 413 QPP 415
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E++L++ F Q+G++ VK ++D + FV+FE +EA A+ +N
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A +K+ E +RR QM Q R
Sbjct: 253 GREVSGRLLYVGRA------QKRVERQNELKRRFEQMKQDR 287
>gi|432888609|ref|XP_004075076.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 346
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V NL Q TEE++K FE+YG V +K++AFVH EDR+ A A+ L+ ++ G+
Sbjct: 4 IFVGNLPQEATEEEIKALFEEYGTVTECDIVKNFAFVHMEDRKAATKAIKNLHQHSLHGT 63
Query: 158 TLEV 161
+ V
Sbjct: 64 AINV 67
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N+ + C EE L+ FE+YG V +K++AFVH + EA+ A+ EL+
Sbjct: 80 IHVANVEKGCDEE-LRALFEEYGTVSECAVVKNFAFVHMPNYDEAMDAIKELDNSDFQEK 138
Query: 158 TLEVSLAK 165
+ V ++K
Sbjct: 139 RIHVQVSK 146
>gi|354496142|ref|XP_003510186.1| PREDICTED: RNA-binding protein 4B [Cricetulus griseus]
gi|344250269|gb|EGW06373.1| RNA-binding protein 4B [Cricetulus griseus]
Length = 357
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|354496140|ref|XP_003510185.1| PREDICTED: RNA-binding protein 4 [Cricetulus griseus]
gi|344250268|gb|EGW06372.1| RNA-binding protein 4 [Cricetulus griseus]
Length = 360
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|449462934|ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRV-------ERVK-RIKDYAFVHFEDRQEAITAMNEL 149
L+V L+ Y T++ L EAF QYG+V +RV + K + FV F EA TA++E+
Sbjct: 37 LFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEM 96
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
NG+ + G + V+ AKP + + I R
Sbjct: 97 NGKPLNGRVIFVNYAKPTTSSRGAIPIAR 125
>gi|444510189|gb|ELV09524.1| RNA-binding protein 4B [Tupaia chinensis]
Length = 357
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|431910216|gb|ELK13289.1| RNA-binding protein 4B [Pteropus alecto]
Length = 359
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|410974608|ref|XP_003993735.1| PREDICTED: RNA-binding protein 14 isoform 2 [Felis catus]
Length = 156
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
F+Q G+V I DYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FDQRGKVYVCTLISDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>gi|449500867|ref|XP_004161215.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRV-------ERVK-RIKDYAFVHFEDRQEAITAMNEL 149
L+V L+ Y T++ L EAF QYG+V +RV + K + FV F EA TA++E+
Sbjct: 37 LFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEM 96
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
NG+ + G + V+ AKP + + I R
Sbjct: 97 NGKPLNGRVIFVNYAKPTTSSRGAIPIAR 125
>gi|34495359|gb|AAQ73500.1| zinc responsive protein ZD7 [Rattus norvegicus]
Length = 357
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|449524006|ref|XP_004169014.1| PREDICTED: uncharacterized protein LOC101227075 [Cucumis sativus]
Length = 305
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQEAITAMNEL 149
L VRN+ C E+L+ FE++G V V KDY AFV F D EA A +
Sbjct: 55 LLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHM 114
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
NG+ AG + V LA ++ +K+ E +R R RR GR
Sbjct: 115 NGKKFAGREITVVLA---AESRKRPEQMRQRSRRGPSGYGGR 153
>gi|149725616|ref|XP_001496839.1| PREDICTED: RNA-binding protein 4B-like [Equus caballus]
Length = 359
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|120577684|gb|AAI30257.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|86262144|ref|NP_033058.2| RNA-binding protein 4 [Mus musculus]
gi|62511057|sp|Q8C7Q4.1|RBM4_MOUSE RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=mLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|26340398|dbj|BAC33862.1| unnamed protein product [Mus musculus]
gi|148701113|gb|EDL33060.1| mCG8382, isoform CRA_a [Mus musculus]
gi|219520483|gb|AAI44950.1| RNA binding motif protein 4 [Mus musculus]
Length = 361
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|282165770|ref|NP_001163955.1| RNA binding motif protein 4 [Rattus norvegicus]
gi|149061994|gb|EDM12417.1| rCG48334, isoform CRA_b [Rattus norvegicus]
Length = 365
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|114052178|ref|NP_001039393.1| RNA-binding protein 4B [Bos taurus]
gi|86438058|gb|AAI12498.1| RNA binding motif protein 4B [Bos taurus]
gi|296471585|tpg|DAA13700.1| TPA: RNA binding motif protein 4B [Bos taurus]
Length = 359
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|55926188|ref|NP_001007015.2| RNA-binding protein 4B [Rattus norvegicus]
gi|62510948|sp|Q64LC9.2|RBM4B_RAT RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30;
AltName: Full=Zinc-responsive protein ZD7
gi|55562771|gb|AAH86416.1| RNA binding motif protein 4B [Rattus norvegicus]
gi|149061999|gb|EDM12422.1| rCG48244, isoform CRA_a [Rattus norvegicus]
gi|149062000|gb|EDM12423.1| rCG48244, isoform CRA_a [Rattus norvegicus]
Length = 357
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|178056236|ref|NP_001116660.1| RNA-binding protein 4B [Sus scrofa]
gi|122131878|sp|Q06AT9.1|RBM4B_PIG RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|115394774|gb|ABI97181.1| RBM30 [Sus scrofa]
Length = 359
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|27754120|ref|NP_079993.2| RNA-binding protein 4B [Mus musculus]
gi|62511125|sp|Q8VE92.1|RBM4B_MOUSE RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|18044496|gb|AAH19488.1| RNA binding motif protein 4B [Mus musculus]
gi|148701119|gb|EDL33066.1| mCG8380, isoform CRA_a [Mus musculus]
gi|148701120|gb|EDL33067.1| mCG8380, isoform CRA_a [Mus musculus]
Length = 357
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|432091076|gb|ELK24288.1| RNA-binding protein 4B [Myotis davidii]
Length = 357
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|57099639|ref|XP_533216.1| PREDICTED: RNA-binding protein 4B isoform 1 [Canis lupus
familiaris]
Length = 359
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|332249630|ref|XP_003273961.1| PREDICTED: RNA-binding protein 4B isoform 1 [Nomascus leucogenys]
Length = 359
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|296273514|ref|YP_003656145.1| RNP-1 like RNA-binding protein [Arcobacter nitrofigilis DSM 7299]
gi|296097688|gb|ADG93638.1| RNP-1 like RNA-binding protein [Arcobacter nitrofigilis DSM 7299]
Length = 92
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+YV N++ TEE L F QYG V VK I D + FV D A+ A+ EL
Sbjct: 3 IYVGNMSYGTTEEGLTTLFSQYGEVSSVKLITDRDTGRAKGFGFVAMNDDSAALKAIEEL 62
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKE 174
NG+ G TL ++ AKP +K ++E
Sbjct: 63 NGKEYDGRTLRINEAKPKEEKPRRE 87
>gi|13899354|ref|NP_113680.1| RNA-binding protein 4B [Homo sapiens]
gi|109105261|ref|XP_001109453.1| PREDICTED: RNA-binding protein 4B-like [Macaca mulatta]
gi|114638751|ref|XP_508578.2| PREDICTED: RNA-binding protein 4B isoform 2 [Pan troglodytes]
gi|297688065|ref|XP_002821512.1| PREDICTED: RNA-binding protein 4B [Pongo abelii]
gi|397517079|ref|XP_003828747.1| PREDICTED: RNA-binding protein 4B [Pan paniscus]
gi|402892714|ref|XP_003909554.1| PREDICTED: RNA-binding protein 4B [Papio anubis]
gi|426369353|ref|XP_004051657.1| PREDICTED: RNA-binding protein 4B isoform 1 [Gorilla gorilla
gorilla]
gi|62511129|sp|Q9BQ04.1|RBM4B_HUMAN RecName: Full=RNA-binding protein 4B; AltName: Full=RNA-binding
motif protein 30; AltName: Full=RNA-binding motif
protein 4B; AltName: Full=RNA-binding protein 30
gi|13097558|gb|AAH03503.1| RNA binding motif protein 4B [Homo sapiens]
gi|13436323|gb|AAH04951.1| RNA binding motif protein 4B [Homo sapiens]
gi|119594964|gb|EAW74558.1| RNA binding motif protein 4B [Homo sapiens]
gi|193787792|dbj|BAG52995.1| unnamed protein product [Homo sapiens]
gi|208967358|dbj|BAG73693.1| RNA binding motif protein 4B [synthetic construct]
gi|325464201|gb|ADZ15871.1| RNA binding motif protein 4B [synthetic construct]
gi|355566265|gb|EHH22644.1| RNA-binding motif protein 4B [Macaca mulatta]
gi|355751922|gb|EHH56042.1| RNA-binding motif protein 4B [Macaca fascicularis]
Length = 359
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|403301169|ref|XP_003941271.1| PREDICTED: RNA-binding protein 4B [Saimiri boliviensis boliviensis]
Length = 359
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRTKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|348565071|ref|XP_003468327.1| PREDICTED: RNA-binding protein 4B-like [Cavia porcellus]
Length = 358
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|426252104|ref|XP_004019758.1| PREDICTED: RNA-binding protein 4B isoform 1 [Ovis aries]
Length = 365
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++NL ++EKLKE F +YG + K ++D FV F +EA A+ E+N
Sbjct: 317 LYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMN 376
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK 173
G+ +AG L V+LA+ D++ +
Sbjct: 377 GKMIAGKPLYVALAQRKEDRRAR 399
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHF 136
Q+ + + +K +YV+NL++ T+E+L + F +YG + ++D + FV+F
Sbjct: 200 QDRENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNF 259
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
E+ +A A+ LNG+ V V A+ K ++E+ L+ R
Sbjct: 260 ENPDDAAKAVEGLNGKKVDDKEWYVGKAQ---KKSEREQELKGR 300
>gi|301784857|ref|XP_002927839.1| PREDICTED: RNA-binding protein 4B-like [Ailuropoda melanoleuca]
gi|281346283|gb|EFB21867.1| hypothetical protein PANDA_017683 [Ailuropoda melanoleuca]
Length = 359
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|126723790|ref|NP_001075548.1| RNA-binding protein 4 [Oryctolagus cuniculus]
gi|62511088|sp|Q9BDY9.1|RBM4_RABIT RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
AltName: Full=RNA-binding motif protein 4
gi|13182931|gb|AAK14991.1|AF233063_1 RNA-binding protein lark [Oryctolagus cuniculus]
Length = 359
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|410974612|ref|XP_003993737.1| PREDICTED: RNA-binding protein 4B [Felis catus]
Length = 359
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|197098970|ref|NP_001126757.1| RNA-binding protein 4 [Pongo abelii]
gi|55732548|emb|CAH92974.1| hypothetical protein [Pongo abelii]
Length = 170
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
>gi|395851687|ref|XP_003798384.1| PREDICTED: RNA-binding protein 4B [Otolemur garnettii]
Length = 359
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|321465063|gb|EFX76067.1| hypothetical protein DAPPUDRAFT_249496 [Daphnia pulex]
Length = 161
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167
TE L+E FE +G + VK K+YA++ FE+R +A+ A++ L+G + G+T E+SL KP
Sbjct: 71 TEVILQEIFEVHGPIWCVKMSKNYAYMRFENRDDAVHALDPLDGYDLYGATWEISLTKPK 130
Query: 168 SDKKK---KEEILRNRERRMMQMMQG 190
K KEE R R ++ G
Sbjct: 131 CVKWASDVKEEKNRKNGRIKNTVLHG 156
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVH 135
P+ + + E ++ + LYV+N + +E+ +KE FE YGR+ K R K + FV
Sbjct: 205 PRRDREQEKATQFRNLYVKNFNEDFSEQNMKEMFEPYGRITSHKIMTDEEGRSKRFGFVA 264
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
FE+ Q A+ A+ LNG+ + L V A+ S ++++EI R E R Q
Sbjct: 265 FENPQSALAAVIALNGKQLGDKYLYV--ARALSKIERQQEINRKLEERKRQ 313
>gi|449459926|ref|XP_004147697.1| PREDICTED: uncharacterized protein LOC101221788 [Cucumis sativus]
Length = 286
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQEAITAMNEL 149
L VRN+ C E+L+ FE++G V V KDY AFV F D EA A +
Sbjct: 53 LLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGEPRGFAFVEFVDPYEASEAQYHM 112
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
NG+ AG + V LA ++ +K+ E +R R RR GR
Sbjct: 113 NGKKFAGREITVVLA---AESRKRPEQMRQRSRRGPSGYGGR 151
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
P+ + + E + K LYV+NL++ TE+ L+E FE YGR+ K + D + FV
Sbjct: 187 PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVA 246
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
FE+ Q A+ A+ L+G+ + G + +A+ S ++++EI R E R Q
Sbjct: 247 FENPQSALAAVIGLHGKQL-GDNKFLYVARALSKNERQQEINRKLEERKRQ 296
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+LKE F YG + K + K + FV F +EA A+ E+NG
Sbjct: 359 LYVKNLDDSINDERLKEVFSAYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNG 418
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
+ V L V+LA+ K++++ IL N+ RR +
Sbjct: 419 RIVGTKPLYVALAQ---RKEERKAILTNQYRRQL 449
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 12/98 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E+ L++ F Q+G+++ VK ++D + FV+FE +EA A++ +N
Sbjct: 256 VYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMN 315
Query: 151 GQTVAGSTLEVSLAKPPSD-----KKKKEEILRNRERR 183
G+ V G L V A+ ++ K++ E++ + R+ R
Sbjct: 316 GKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNR 353
>gi|344295811|ref|XP_003419604.1| PREDICTED: RNA-binding protein 4B-like [Loxodonta africana]
Length = 359
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F YG + K R K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP------GPSGAHAPLLT 205
+ V+ L V+LA+ K++++ IL N+ + + M+ GP PSG
Sbjct: 356 RIVSTKPLYVALAQ---RKEERKAILTNQYMQRLATMRALPGPLLGSFQTPSGYFL---- 408
Query: 206 GPPMPR 211
PPMP+
Sbjct: 409 -PPMPQ 413
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
+Y++N +++L+E F ++G+ VK R K + FV+FE +EA A+ ++N
Sbjct: 193 VYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ + G L V A +K+ E +R+ QM Q R
Sbjct: 253 GKEINGRLLYVGRA------QKRLERQSELKRKFEQMKQER 287
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G I + W+ Q +P S V ++++NL + L + F +G + K + D
Sbjct: 78 KGRPIRIMWS--QRDPGLRK-SGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE 134
Query: 131 -----YAFVHFEDRQEAITAMNELNG 151
Y FVHFE + A A+ +NG
Sbjct: 135 NGSRGYGFVHFETHEAATRAIETMNG 160
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL +E L+EAF+Q+G + K I D + FV F +EA A+ E+N
Sbjct: 288 LYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMN 347
Query: 151 GQTVAGSTLEVSLAKPPSDKK 171
G+ G L V LA+ D+K
Sbjct: 348 GRIFGGKPLYVGLAQRKEDRK 368
>gi|47209606|emb|CAF93001.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1197
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 89 TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNE 148
T +++ VK+ ++ NLT T ++L+E FE+YG+V +K+Y FVH + EA A+
Sbjct: 815 THSITMVKI-FIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNMSEAEEAIKN 873
Query: 149 LNGQTVAGSTLEVSLAK 165
LN + G + V L+K
Sbjct: 874 LNQHQLHGWRMNVELSK 890
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL + T + L+ FE++G V +KDYAFVH E ++A+ A+ +++ G
Sbjct: 899 LHVSNLGEGVTSDVLRARFEEFGPVVECDIVKDYAFVHMERMEDAMEAIEKMDNTAFKGK 958
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 959 LMSVQLS 965
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVH 135
P+ + + E + K LYV+NL++ TE+ L+E FE YGR+ K R + + FV
Sbjct: 184 PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVA 243
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
FE+ Q A+ A+ L+G+ + G + +A+ S ++++EI R E R Q
Sbjct: 244 FENPQSAVAAVIGLHGKQL-GDNKFLYVARALSKAERQQEINRKLEERKRQ 293
>gi|348565067|ref|XP_003468325.1| PREDICTED: RNA-binding protein 4-like [Cavia porcellus]
Length = 365
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKASTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|426252100|ref|XP_004019756.1| PREDICTED: RNA-binding protein 4 isoform 1 [Ovis aries]
Length = 361
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|116004239|ref|NP_001070478.1| RNA-binding protein 4 [Bos taurus]
gi|91207336|sp|Q3MHX3.1|RBM4_BOVIN RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4; AltName: Full=RNA-binding motif protein
4a
gi|75775098|gb|AAI04571.1| RNA binding motif protein 4 [Bos taurus]
gi|146231708|gb|ABQ12929.1| RNA binding motif protein 4 [Bos taurus]
gi|296471486|tpg|DAA13601.1| TPA: RNA-binding protein 4 [Bos taurus]
gi|440899389|gb|ELR50692.1| RNA-binding protein 4 [Bos grunniens mutus]
Length = 362
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|431910217|gb|ELK13290.1| RNA-binding protein 4 [Pteropus alecto]
Length = 365
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|384252135|gb|EIE25612.1| hypothetical protein COCSUDRAFT_83619, partial [Coccomyxa
subellipsoidea C-169]
Length = 207
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNE 148
++V NL +E +L+E FE+YGRV K R K + FV F+D ++A A+ +
Sbjct: 36 TIFVGNLNHETSERRLREFFEEYGRVLSTKVVFNPETGRSKGFGFVKFDDARDAEDAIKQ 95
Query: 149 LNGQTVAGSTLEVSLAK 165
+GQT+ G T++ + AK
Sbjct: 96 ADGQTMDGRTIKCNFAK 112
>gi|148235767|ref|NP_001085690.1| MGC80472 protein [Xenopus laevis]
gi|49255990|gb|AAH73203.1| MGC80472 protein [Xenopus laevis]
Length = 336
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL+ CT ++L+ FE+YG V +KDYAFVH E EA+ A+ L G
Sbjct: 80 LHVSNLSSSCTSDELRAKFEEYGAVLECDIVKDYAFVHMERSAEALDAIKNLENTEFKGK 139
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 140 RMHVQLS 146
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL T+ +LK FEQ+GRV IK+Y FVH +DR+ A A++ LN +
Sbjct: 4 LFVGNLPPEATQPELKSLFEQFGRVTECDIIKNYGFVHMDDRKAADEAVHNLNQYKLHNV 63
Query: 158 TLEV--SLAKPPSDKK 171
+ V S KP + K
Sbjct: 64 AINVEHSRGKPKASTK 79
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL +E L+EAF+Q+G + K I D + FV F +EA A+ E+N
Sbjct: 288 LYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMN 347
Query: 151 GQTVAGSTLEVSLAKPPSDKK 171
G+ G L V LA+ D+K
Sbjct: 348 GRIFGGKPLYVGLAQRKEDRK 368
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 320 LYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNG 379
Query: 152 QTVAGSTLEVSLAKPPSDKK---KKEEILRNRERRMMQMMQGRGGPGPSGAH-APLLTGP 207
+ V L V+LA+ D+K + + R RM QM Q PG +G++ P L P
Sbjct: 380 RIVGSKPLYVALAQRKEDRKAHLASQYMQRMANMRMQQMGQIFHQPGNAGSYFVPTLPQP 439
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVL---YVRNLTQYCTEEKLKEAFEQYGRVERV 125
+L G + V P++E E K K+ YV+N + T++KLKE FE+YG +
Sbjct: 184 MLLNGKKVYVGKFIPRKERQKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSH 243
Query: 126 K-RIKD------YAFVHFEDRQEAITAMNELNGQTVA-GSTLEVSLAKPPSDKKKK 173
K IKD + FV FED A A+ +LNG+ +A G + V A+ ++++++
Sbjct: 244 KVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQE 299
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G I + W+ Q +P S V ++++NL + + + + F +G + K +D
Sbjct: 100 KGRPIRIMWS--QRDPSLRK-SGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDE 156
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
Y FVHFE + A ++ ++NG + G + V P +++K+
Sbjct: 157 SGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGKFIPRKERQKE 205
>gi|401408199|ref|XP_003883548.1| Rbm28 protein, related [Neospora caninum Liverpool]
gi|325117965|emb|CBZ53516.1| Rbm28 protein, related [Neospora caninum Liverpool]
Length = 163
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 10/87 (11%)
Query: 97 VLYVRNLTQYCTEEKLKEAFEQYGRVE--------RVKRIKDYAFVHFEDRQEAITAMNE 148
++ VRNL + EE L E FE +G+++ R +K YAF+ ++ +EA A+
Sbjct: 77 IIVVRNLHEEAQEEDLHENFESFGQIKNLHLNLDRRTGFVKGYAFIEYDSFEEAEAAVKG 136
Query: 149 LNGQTVAGSTLEVSLA--KPPSDKKKK 173
++ Q + G T+ V A KPPSDKK++
Sbjct: 137 MDNQQLLGQTVYVDWAFSKPPSDKKRR 163
>gi|149725614|ref|XP_001496788.1| PREDICTED: RNA-binding protein 4 isoform 1 [Equus caballus]
gi|338712238|ref|XP_003362679.1| PREDICTED: RNA-binding protein 4 isoform 2 [Equus caballus]
Length = 361
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|73982920|ref|XP_852303.1| PREDICTED: RNA-binding protein 4 isoform 1 [Canis lupus familiaris]
gi|301784859|ref|XP_002927840.1| PREDICTED: RNA-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
gi|301784861|ref|XP_002927841.1| PREDICTED: RNA-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
gi|410974610|ref|XP_003993736.1| PREDICTED: RNA-binding protein 4 [Felis catus]
gi|281346284|gb|EFB21868.1| hypothetical protein PANDA_017684 [Ailuropoda melanoleuca]
Length = 365
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|291385477|ref|XP_002709280.1| PREDICTED: RNA binding motif protein 4B-like [Oryctolagus
cuniculus]
Length = 365
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|380817026|gb|AFE80387.1| RNA-binding protein 4B [Macaca mulatta]
gi|384949730|gb|AFI38470.1| RNA-binding protein 4B [Macaca mulatta]
gi|410254450|gb|JAA15192.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410295008|gb|JAA26104.1| RNA binding motif protein 4B [Pan troglodytes]
gi|410352743|gb|JAA42975.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
P+ + + E + K LYV+NL++ TE+ L+E FE YGR+ K + D + FV
Sbjct: 179 PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVA 238
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
FE+ Q A+ A+ L+G+ + G + +A+ S ++++EI R E R Q
Sbjct: 239 FENPQSALAAVIGLHGKQL-GDNKFLYVARALSKAERQQEINRKLEERKRQ 288
>gi|342878966|gb|EGU80243.1| hypothetical protein FOXB_09170 [Fusarium oxysporum Fo5176]
Length = 1079
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 69 LLSRGCDIIVDWADPQEEPDTE-TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK- 126
+L G ++ ++DP + E +++ + +++ NL + TE LKE F +YG V RV
Sbjct: 740 VLEGGLKLLAKYSDPSHKKAREGALAEGREIHISNLDRTATEADLKEVFSKYGNVTRVNL 799
Query: 127 ------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
+ K +AF+ F ++EA A+ E+N LEV+L+K K+ ++ +
Sbjct: 800 PRNLVGKTKGFAFIDFATKEEAEKAVAEMNNTKFKSQILEVALSKESKIKRAATTVVAD- 858
Query: 181 ERRMMQMMQGRGGPGPS 197
R P PS
Sbjct: 859 --------TARSSPAPS 867
>gi|365153971|ref|ZP_09350405.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
gi|158605004|gb|EAT99377.3| 31 kDa ribonucleoprotein, (RNA-binding proteinRNP-T) (RNA-binding
protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)
[Campylobacter concisus 13826]
gi|363650683|gb|EHL89770.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
Length = 81
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+YV NL+ TE +LKEAF Q+G V R K +KD + FV +D E A++ L
Sbjct: 3 IYVGNLSYRTTEAELKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAIDAL 62
Query: 150 NGQTVAGSTLEVSLAKP 166
N + + G TL V+ A+P
Sbjct: 63 NEKELGGRTLRVNEARP 79
>gi|410222930|gb|JAA08684.1| RNA binding motif protein 4B [Pan troglodytes]
Length = 359
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|383422057|gb|AFH34242.1| RNA-binding protein 4B [Macaca mulatta]
Length = 359
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E++L++ F Q+G ++ VK ++D + FV+FE +EA A++ +N
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A+ ++++ + L+ R +M Q Q R
Sbjct: 253 GKEVSGQLLYVGRAQKRAERQSE---LKRRFEQMKQERQNR 290
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+LKE F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
+ V L V+LA+ K++++ IL N+ RR
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYRR 384
>gi|178056229|ref|NP_001116659.1| RNA-binding protein 4 [Sus scrofa]
gi|115394772|gb|ABI97180.1| RBM4 [Sus scrofa]
Length = 365
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFAHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y F H ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFAHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|158259071|dbj|BAF85494.1| unnamed protein product [Homo sapiens]
Length = 364
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPACTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|126338772|ref|XP_001364800.1| PREDICTED: RNA-binding protein 4B-like [Monodelphis domestica]
Length = 365
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRALFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT +L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISSACTNLELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRALFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E++L++ F Q+G ++ VK ++D + FV+FE +EA A++ +N
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A+ ++++ + L+ R +M Q Q R
Sbjct: 253 GKEVSGQLLYVGRAQKRAERQSE---LKRRFEQMKQERQNR 290
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+LKE F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
+ V L V+LA+ K++++ IL N+ RR
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYRR 384
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E++L++ F Q+G ++ VK ++D + FV+FE +EA A++ +N
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A+ ++++ + L+ R +M Q Q R
Sbjct: 253 GKEVSGQLLYVGRAQKRAERQSE---LKRRFEQMKQERQNR 290
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+LKE F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
+ V L V+LA+ K++++ IL N+ RR
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYRR 384
>gi|432921337|ref|XP_004080108.1| PREDICTED: RNA-binding protein 4B-like [Oryzias latipes]
Length = 344
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V NL + TEE++K FE+YG V IK++AFVH EDR+ A A+ L+ ++ G+
Sbjct: 4 IFVGNLPREATEEEIKALFEEYGAVTECAIIKNFAFVHMEDRKAATKAIKNLHQHSLHGT 63
Query: 158 TLEV 161
+ V
Sbjct: 64 AINV 67
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N+ + C EE L+ FE+YG V +K++AFVH + EA+ A+ EL+
Sbjct: 80 IHVANVEKGCDEE-LRALFEEYGTVSECAVVKNFAFVHMPNYDEAMDAIKELDNSDFQEK 138
Query: 158 TLEVSLAK 165
+ V ++K
Sbjct: 139 RIHVQVSK 146
>gi|395851691|ref|XP_003798386.1| PREDICTED: RNA-binding protein 4 [Otolemur garnettii]
Length = 365
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|296218877|ref|XP_002755613.1| PREDICTED: RNA-binding protein 4 [Callithrix jacchus]
gi|403301167|ref|XP_003941270.1| PREDICTED: RNA-binding protein 4 [Saimiri boliviensis boliviensis]
Length = 364
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|93277122|ref|NP_002887.2| RNA-binding protein 4 isoform 1 [Homo sapiens]
gi|350539417|ref|NP_001233570.1| RNA-binding protein 4 [Pan troglodytes]
gi|332249626|ref|XP_003273959.1| PREDICTED: RNA-binding protein 4 isoform 2 [Nomascus leucogenys]
gi|397517069|ref|XP_003828742.1| PREDICTED: RNA-binding protein 4 isoform 1 [Pan paniscus]
gi|402892712|ref|XP_003909553.1| PREDICTED: RNA-binding protein 4 [Papio anubis]
gi|426369345|ref|XP_004051653.1| PREDICTED: RNA-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|62511089|sp|Q9BWF3.1|RBM4_HUMAN RecName: Full=RNA-binding protein 4; AltName: Full=Lark homolog;
Short=hLark; AltName: Full=RNA-binding motif protein 4;
AltName: Full=RNA-binding motif protein 4a
gi|75077302|sp|Q4R979.1|RBM4_MACFA RecName: Full=RNA-binding protein 4; AltName: Full=RNA-binding
motif protein 4
gi|12653083|gb|AAH00307.1| RNA binding motif protein 4 [Homo sapiens]
gi|21618467|gb|AAH32735.1| RNA binding motif protein 4 [Homo sapiens]
gi|67967719|dbj|BAE00342.1| unnamed protein product [Macaca fascicularis]
gi|167774193|gb|ABZ92531.1| RNA binding motif protein 4 [synthetic construct]
gi|193783581|dbj|BAG53492.1| unnamed protein product [Homo sapiens]
gi|261859218|dbj|BAI46131.1| RNA binding motif protein 14 [synthetic construct]
gi|343958742|dbj|BAK63226.1| RNA binding motif protein 4 [Pan troglodytes]
gi|355566266|gb|EHH22645.1| RNA-binding motif protein 4 [Macaca mulatta]
gi|380784029|gb|AFE63890.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|383409025|gb|AFH27726.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|384942564|gb|AFI34887.1| RNA-binding protein 4 isoform 1 [Macaca mulatta]
gi|410222926|gb|JAA08682.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222932|gb|JAA08685.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410222940|gb|JAA08689.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254448|gb|JAA15191.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410254452|gb|JAA15193.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410295006|gb|JAA26103.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352741|gb|JAA42974.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352747|gb|JAA42977.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352751|gb|JAA42979.1| RNA binding motif protein 4 [Pan troglodytes]
gi|410352753|gb|JAA42980.1| RNA binding motif protein 4 [Pan troglodytes]
Length = 364
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>gi|351710884|gb|EHB13803.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 318
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKASTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY-------AFVHFEDRQEAITAMNELN 150
LY++NL +++L E F YG++ K ++D FV F R+EA A+ E+N
Sbjct: 322 LYMKNLDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMN 381
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGPPMP 210
G+ ++G L V+ A+ D+K + +++++ M+ P GAH P P +
Sbjct: 382 GKMISGKPLYVAFAQRKEDRKAMLQPGFGFQQQLVPGMR------PGGAHMPNYFVPVVQ 435
Query: 211 RG 212
+G
Sbjct: 436 QG 437
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHF 136
QE ++ +K ++V+NL++ T+E L + F YG + + + + F++F
Sbjct: 205 QERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINF 264
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
+ +A A+ ELNG+ + V A+ KK + EI +RR Q M+
Sbjct: 265 KSPDDAARAVEELNGKKINDKEWYVGRAQ----KKSEREI--ELKRRFEQSMK 311
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL T+EKL+E F ++G + K ++D FV F EA +NE+N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPS-GAHAPLLTG 206
G+ V G L V+LA ++KEE R + Q Q R P G P+ TG
Sbjct: 390 GKMVGGKPLYVALA------QRKEE---RRAKLQAQFSQMRPAFIPGVGPRMPIFTG 437
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAM 146
K +YV+NL++ T+++LK F QYG + ++D + FV+FE+ ++A A+
Sbjct: 223 KFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAV 282
Query: 147 NELNGQ 152
LNG+
Sbjct: 283 EALNGK 288
>gi|45595611|gb|AAH67187.1| Rbm4.2 protein [Danio rerio]
Length = 384
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V N++ CT ++L+ FE+YG V +KDYAFVH E +A+ A++ L T G
Sbjct: 80 LHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTFQGK 139
Query: 158 TLEVSLA 164
++V L+
Sbjct: 140 LIKVQLS 146
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
+++ NL+ T + L+ F ++G V+ +K+Y FVH + ++EA A+ +L+ + G
Sbjct: 4 IFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYELKGQ 63
Query: 158 TLEVSLAK 165
+ V L+K
Sbjct: 64 AINVELSK 71
>gi|41054431|ref|NP_955971.1| RNA binding motif protein 4 like [Danio rerio]
gi|27881945|gb|AAH44503.1| RNA binding motif protein 4.2 [Danio rerio]
gi|157423277|gb|AAI53458.1| Rbm4.2 protein [Danio rerio]
gi|182890716|gb|AAI65179.1| Rbm4.2 protein [Danio rerio]
Length = 385
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V N++ CT ++L+ FE+YG V +KDYAFVH E +A+ A++ L T G
Sbjct: 80 LHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTFQGK 139
Query: 158 TLEVSLA 164
++V L+
Sbjct: 140 LIKVQLS 146
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
+++ NL+ T + L+ F ++G V+ +K+Y FVH + ++EA A+ +L+ + G
Sbjct: 4 IFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYELKGQ 63
Query: 158 TLEVSLAK 165
+ V L+K
Sbjct: 64 AINVELSK 71
>gi|403343651|gb|EJY71156.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 491
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFE 137
EEP E K K L+V NL+ + TE+ L +AF +YG V VK R K +AFV F
Sbjct: 229 HEEPANEDDDK-KELFVGNLSFHTTEDSLGQAFGEYGTVTNVKLPQQDGRPKGFAFVEFA 287
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLA 164
+EA A++ NGQ G L ++ +
Sbjct: 288 THKEAQAALDAYNGQDFEGRALRINFS 314
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDIIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGG---PGPSGAHAPLLTGPP 208
+ V+ L V+LA+ K++++ IL ++ + + ++G G P P+ P + PP
Sbjct: 356 RIVSTKPLYVALAQ---RKEERKAILTSQYMQRLSTLRGLNGPLFPQPTNYFLPAIPQPP 412
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+N +E L+E F Q+G+ VK + D + FV+FE +EA A++ +N
Sbjct: 193 IYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSNMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ + G L V A+ S+++ + +RR QM Q R
Sbjct: 253 GKELGGRVLYVGRAQKRSERQSE------LKRRFEQMKQER 287
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL T+EKL+E F ++G + K ++D FV F EA +NE+N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPS-GAHAPLLTG 206
G+ V G L V+LA ++KEE R + Q Q R P G P+ TG
Sbjct: 390 GKMVGGKPLYVALA------QRKEE---RRAKLQAQFSQMRPAFIPGVGPRMPIFTG 437
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAM 146
K +YV+NL++ T+++LK F QYG + ++D + FV+FE+ ++A A+
Sbjct: 223 KFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAV 282
Query: 147 NELNGQ 152
LNG+
Sbjct: 283 EALNGK 288
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 20/104 (19%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LY++NL +EKL++ F +G + RVK R K + + F +EAI AM E+NG
Sbjct: 488 LYIKNLDDTIDDEKLRKEFASFGSISRVKVMQEEGRSKGFGLICFSSHEEAIKAMTEMNG 547
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ--GRGG 193
+ + L ++LA+ RN ER+ Q GRGG
Sbjct: 548 RILGSKPLNIALAQ------------RNEERKTCFDNQXVGRGG 579
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAM 146
S + ++++NL + + L E F +G++ K + D YAFVHF+++ A A+
Sbjct: 288 SGIGNVFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAI 347
Query: 147 NELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
E+NG + + VS K +K +E L+N+
Sbjct: 348 EEMNGTLLKNCRVFVSRFK---SRKDRESELKNK 378
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVK---VLYVRNLTQYCTEEKLKEAFEQYGRVERVK 126
L + C + V +++ ++E +K +Y++N + +LKE F +YG VK
Sbjct: 354 LLKNCRVFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVK 413
Query: 127 RIKD-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
+ D + FV F + A A+ E+NG+ + G + V A+
Sbjct: 414 VMTDSSGKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQ 459
>gi|148909314|gb|ABR17756.1| unknown [Picea sitchensis]
Length = 344
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYA 132
A P +PD + M +VK ++V L EEK+KE F ++G +ERV + KD+
Sbjct: 33 AQPLNDPDEDVMEQVKSVFVDGLQPTWNEEKVKEHFGKFGEIERVVLACNIQSAKRKDFG 92
Query: 133 FVHFEDRQEAITAMNEL--NGQTVAGST---LEVSLAKP 166
FV++ R+ AI + + + + G + ++VSLAKP
Sbjct: 93 FVNYTTREAAIACIEAFSKDDELIDGDSKVKVKVSLAKP 131
>gi|45361503|ref|NP_989328.1| serine/arginine-rich splicing factor 2 [Xenopus (Silurana)
tropicalis]
gi|39794351|gb|AAH64167.1| splicing factor, arginine/serine-rich 2 [Xenopus (Silurana)
tropicalis]
gi|89272888|emb|CAJ82901.1| splicing factor, arginine/serine-rich 2 [Xenopus (Silurana)
tropicalis]
Length = 220
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150
LY++NL +EKLKE F +YG V K + + + FV + + +EA+ AM E+N
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQM------MQGR-----GGPGPSGA 199
G+ + L V+LA+ +++ + L + R M M G GGP SG
Sbjct: 390 GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPM-SGP 448
Query: 200 HAPLLTG 206
H P+ G
Sbjct: 449 HHPMFIG 455
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL + T+++LK+ F +YG + +KD + FV+F + A A+ ++N
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
G ++ L V A+ SD ++EE+ R E+
Sbjct: 287 GISLGEDVLYVGRAQKKSD--REEELRRKFEQ 316
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRV-------ERVKRIKDYAFVHFED 138
+P T K V +++NL + L E F +G + + V R K Y FV FE
Sbjct: 123 DPSTRLSGKGNV-FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEK 181
Query: 139 RQEAITAMNELNG 151
+ A A+++LNG
Sbjct: 182 EETAQAAIDKLNG 194
>gi|365192966|gb|AEW68341.1| putative nuclear acid binding protein [Medicago sativa]
Length = 409
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 80 WADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKDYAFVHFE 137
+ +PQ E ++V NL T+E LK+ F QYG + VK K FV F
Sbjct: 256 YQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRCGFVQFA 315
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEE 175
DR A A+ LNG + G + +S + P++K+ +++
Sbjct: 316 DRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQD 353
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150
LY++NL +EKLKE F +YG V K + + + FV + + +EA+ AM E+N
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQM------MQGR-----GGPGPSGA 199
G+ + L V+LA+ +++ + L + R M M G GGP SG
Sbjct: 390 GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPM-SGP 448
Query: 200 HAPLLTG 206
H P+ G
Sbjct: 449 HHPMFIG 455
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL + T+++LK+ F +YG + +KD + FV+F + A A+ ++N
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
G ++ L V A+ SD ++EE+ R E+
Sbjct: 287 GISLGEDVLYVGRAQKKSD--REEELRRKFEQ 316
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRV-------ERVKRIKDYAFVHFED 138
+P T K V +++NL + L E F +G + + V R K Y FV FE
Sbjct: 123 DPSTRLSGKGNV-FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEK 181
Query: 139 RQEAITAMNELNG 151
+ A A+++LNG
Sbjct: 182 EETAQAAIDKLNG 194
>gi|384916047|ref|ZP_10016247.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
gi|384526575|emb|CCG92118.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
Length = 99
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV NL +E L+E FEQYG+V + I D +AFV E Q A +A++ L
Sbjct: 6 LYVGNLPFRISENDLRELFEQYGQVNEINLIVDKMTGQSRGFAFVTMETSQAAQSAIDSL 65
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
NG +++G + V+ AKP ++ + R RR
Sbjct: 66 NGTSISGRQIVVNEAKPREERPHRHRENSGRSRR 99
>gi|408792487|ref|ZP_11204097.1| hypothetical protein LEP1GSC017_0784 [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408463897|gb|EKJ87622.1| hypothetical protein LEP1GSC017_0784 [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 87
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+YV NL+ TE KL E F +G V K I D + F+ ++R+EA A+N+L
Sbjct: 5 IYVGNLSYEMTENKLNELFSAHGAVSSAKIITDQYTGGSKGFGFIEMKERREADNAINDL 64
Query: 150 NGQTVAGSTLEVSLAKPPSDK 170
NG+ + ++V++AKP ++
Sbjct: 65 NGKNILNREMKVNIAKPKTNN 85
>gi|351710885|gb|EHB13804.1| RNA-binding protein 4 [Heterocephalus glaber]
Length = 192
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 16 FVNVRKFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKT 65
V + K + REA E+ Y K+LE YG DK A +D +
Sbjct: 35 LVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRN 91
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
H G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V
Sbjct: 92 LHHYKLHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIEC 144
Query: 126 KRIKDYAFVHFEDRQEAITAMNELNGQTVAG 156
+KDYAFVH E ++A+ A+ L+ G
Sbjct: 145 DIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 175
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 41 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 100
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 101 NINVEASKNKSKASTKLHV 119
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150
LY++NL +EKLKE F +YG V K + + + FV + + +EA+ AM E+N
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 403
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQM------MQGR-----GGPGPSGA 199
G+ + L V+LA+ +++ + L + R M M G GGP SG
Sbjct: 404 GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPM-SGP 462
Query: 200 HAPLLTG 206
H P+ G
Sbjct: 463 HHPMFIG 469
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL + T+++LK+ F +YG + +KD + FV+F + A A+ ++N
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
G ++ L V A+ SD ++EE+ R E+
Sbjct: 301 GISLGEDVLYVGRAQKKSD--REEELRRKFEQ 330
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRV-------ERVKRIKDYAFVHFED 138
+P T K V +++NL + L E F +G + + V R K Y FV FE
Sbjct: 137 DPSTRLSGKGNV-FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEK 195
Query: 139 RQEAITAMNELNG 151
+ A A+++LNG
Sbjct: 196 EETAQAAIDKLNG 208
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP------GPSGAHAPLLT 205
+ V L V+LA+ K++++ IL N+ + + ++ GGP P+ P +
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVP 412
Query: 206 GPP 208
PP
Sbjct: 413 QPP 415
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 13/102 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E+ L++ F Q+G++ VK ++D + FV+FE +EA A+ ++N
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
G+ V+G L V A +K+ E +RR QM Q R
Sbjct: 253 GKEVSGRLLYVGRA------QKRVERQNELKRRFEQMKQDRA 288
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL EE +++ F G+ K +
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLTTAEETIEKEFSNVKPGK----KHLCL 263
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y + + L Q + GS +EV+LAKP KE +R +G
Sbjct: 264 YCTSIILNLHTIKKMITILCLQIIDGSPIEVTLAKP----VDKESYVR--------YTRG 311
Query: 191 RGGPG----------------PSGAH--APLLTGPPMPRGSVP 215
GG G P+ A+ AP+ PP ++P
Sbjct: 312 TGGRGAAIQGEYAYTIGHVYDPTTAYLGAPVFYAPPAYTAAIP 354
>gi|432091077|gb|ELK24289.1| RNA-binding protein 4 [Myotis davidii]
Length = 382
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKASTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRTLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|357480263|ref|XP_003610417.1| RNA-binding protein [Medicago truncatula]
gi|355511472|gb|AES92614.1| RNA-binding protein [Medicago truncatula]
Length = 411
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 80 WADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKDYAFVHFE 137
+ +PQ E ++V NL T+E LK+ F QYG + VK K FV F
Sbjct: 258 YQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRCGFVQFA 317
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEE 175
DR A A+ LNG + G + +S + P++K+ +++
Sbjct: 318 DRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQD 355
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL T+EKL+E F ++G + K ++D FV F EA +NE+N
Sbjct: 325 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 384
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK 173
G+ V G L V+LA+ +++ K
Sbjct: 385 GKMVGGKPLYVALAQRKEERRAK 407
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAM 146
K +YV+NL++ T+++LK F QYG + ++D + FV+FE+ ++A A+
Sbjct: 218 KFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAV 277
Query: 147 NELNGQ 152
LNG+
Sbjct: 278 EALNGK 283
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP------GPSGAHAPLLT 205
+ V L V+LA+ K++++ IL N+ + + ++ GGP P+ P +
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVP 412
Query: 206 GPP 208
PP
Sbjct: 413 QPP 415
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 13/102 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E+ L++ F Q+G++ VK ++D + FV+FE +EA A+ ++N
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG 192
G+ V+G L V A +K+ E +RR QM Q R
Sbjct: 253 GKEVSGRLLYVGRA------QKRVERQNELKRRFEQMKQDRA 288
>gi|388507756|gb|AFK41944.1| unknown [Medicago truncatula]
Length = 411
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 80 WADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKDYAFVHFE 137
+ +PQ E ++V NL T+E LK+ F QYG + VK K FV F
Sbjct: 258 YQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRCGFVQFA 317
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEE 175
DR A A+ LNG + G + +S + P++K+ +++
Sbjct: 318 DRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQD 355
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL EE +++ F G+ K +
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLTTAEETIEKEFSNVKPGK----KHLCL 263
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
Y + + L Q + GS +EV+LAKP KE +R +G
Sbjct: 264 YCTSIILNLHTIKKMITILCLQIIDGSPIEVTLAKP----VDKESYVR--------YTRG 311
Query: 191 RGGPG----------------PSGAH--APLLTGPPMPRGSVP 215
GG G P+ A+ AP+ PP ++P
Sbjct: 312 TGGRGAAIQGEYAYTIGHVYDPTTAYLGAPVFYAPPAYTAAIP 354
>gi|50545625|ref|XP_500351.1| YALI0B00616p [Yarrowia lipolytica]
gi|49646217|emb|CAG82565.1| YALI0B00616p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 10/103 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAITAMNELN 150
L+VR L++ TEE L+ FE++G V + R K + FV+FE+ ++A+TA+ L+
Sbjct: 192 LFVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHRAKGFGFVNFEEHRDAVTAVAALD 251
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRE-RRMMQMMQGRG 192
G + G+ + VS A+ S +++ E+ R E R+ ++ RG
Sbjct: 252 GAELCGARISVSRAQ--SKVERQAELKRAYEANRIERLRNARG 292
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY+ NL E+L+ F ++G + V+ + D + FV F D A A+ E++
Sbjct: 295 LYITNLNPAINNERLRAYFSKFGEITSVRIMLDAVGNSKGFGFVCFRDPDHASNAIAEMH 354
Query: 151 GQTVAGSTLEVSLA 164
+ + G+ L+V++A
Sbjct: 355 NRPIEGNVLQVAIA 368
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVH 135
P+ + + E + K LYV+NL++ TE+ L+E FE YGR+ K R + + FV
Sbjct: 183 PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVA 242
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
FE Q A+ A+ L+G+ + G + +A+ S ++++EI R E R Q
Sbjct: 243 FESPQSALAAVIGLHGKQL-GDNKFLYVARALSKAERQQEINRKLEERKRQ 292
>gi|389578479|ref|ZP_10168506.1| RRM domain-containing RNA-binding protein [Desulfobacter postgatei
2ac9]
gi|389400114|gb|EIM62336.1| RRM domain-containing RNA-binding protein [Desulfobacter postgatei
2ac9]
Length = 93
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+YV NLT+Y TEE LKEAFE +G VE VK IK+ + FV EA A+ L
Sbjct: 3 IYVGNLTEYMTEEALKEAFEAFGEVESVKIIKNRFNERSKGFGFVEMPSNSEADKAIKAL 62
Query: 150 NGQTVAGSTLEVSLA 164
NG V ++V+ A
Sbjct: 63 NGNIVDKKPIKVNHA 77
>gi|426369357|ref|XP_004051659.1| PREDICTED: RNA-binding protein 4B isoform 3 [Gorilla gorilla
gorilla]
Length = 151
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVH E ++A+ A+ L+ G L + P
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGELLWAWVVAP 148
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY-------AFVHFEDRQEAITAMNELN 150
LY++NL T+++L+E F +G++ K ++D FV F R+EA A+ E+N
Sbjct: 207 LYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMN 266
Query: 151 GQTVAGSTLEVSLAKPPSDKK 171
G+ ++G L V+ A+ D+K
Sbjct: 267 GKMISGKPLYVAFAQRKEDRK 287
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHF 136
QE ++ +K ++V+NL++ T++ L + F YG + + + + FV+F
Sbjct: 90 QERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFSGYGTITSAVVMIGMDGKSRCFDFVNF 149
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
E +A A+ ELNG+ + V A +KK E + +RR Q M+
Sbjct: 150 ESPDDAARAVEELNGKKINDKEWYVGRA------QKKSEREMDLKRRFEQSMK 196
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LY++NL + +EKL+ F +G + RVK R K + + F +EA AM E+NG
Sbjct: 290 LYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLICFSSAEEATKAMTEMNG 349
Query: 152 QTVAGSTLEVSLAKPPSDKK 171
+ + L ++LA+ P ++K
Sbjct: 350 RILGSKPLNIALAQKPXERK 369
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVK---VLYVRNLTQYCTEEKLKEAFEQYGRVERVK 126
L + C + V +++ + E +K +Y++N +E+LKE F +YG+ VK
Sbjct: 156 LLKDCRLFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVK 215
Query: 127 RIKD-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ D + FV F+ + A A+ E+NG+ + G L V A+ ++++
Sbjct: 216 VMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQ 267
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAM 146
S + ++++NL + + L E F +G++ K + D YAFVHF+++ A A+
Sbjct: 90 SGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHGSRGYAFVHFQNQIAADRAI 149
Query: 147 NELNGQTVAGSTLEVSLAKPPSDK 170
E+NG + L V K D+
Sbjct: 150 EEMNGTLLKDCRLFVGRFKSRKDR 173
>gi|242073000|ref|XP_002446436.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
gi|241937619|gb|EES10764.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
Length = 135
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L+V L+Q+ TEE L EAF +YG+V ++D + FV F +EA A E+
Sbjct: 37 LFVGGLSQFATEESLAEAFSRYGQVIEATVVRDKVTDIPKGFGFVKFASPEEANNAREEM 96
Query: 150 NGQTVAGSTLEVSLAKPPSDK 170
NG+ + G + V +AK D+
Sbjct: 97 NGKALNGRVIYVDIAKAKPDR 117
>gi|62511030|sp|Q6IQ97.1|RBM41_DANRE RecName: Full=RNA-binding protein 4.1; AltName: Full=RNA-binding
motif protein 4.1
gi|47940417|gb|AAH71513.1| RNA binding motif protein 4.1 [Danio rerio]
gi|160774000|gb|AAI55176.1| RNA binding motif protein 4.1 [Danio rerio]
Length = 419
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 60 DDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY 119
D+ + H + G + V+ + + +P T T L+V N++ CT ++L+ FE+Y
Sbjct: 49 DEAIQNLHHYMLNGMAMNVEMS--KGKPKTSTK-----LHVGNISSSCTNQELRAKFEEY 101
Query: 120 GRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
G V +KDYAFVH E ++A+ A++ L+ G + V L+
Sbjct: 102 GPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLS 146
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V NL+ T E+++ F QYG++ +K++ FVH + + EA A+ L+ + G
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNGM 63
Query: 158 TLEVSLAK 165
+ V ++K
Sbjct: 64 AMNVEMSK 71
>gi|149491652|ref|XP_001512914.1| PREDICTED: RNA-binding protein 4B-like isoform 1 [Ornithorhynchus
anatinus]
Length = 365
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT +L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKASTK-------LHVGNISPTCTNMELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|297729321|ref|NP_001177024.1| Os12g0577100 [Oryza sativa Japonica Group]
gi|77556261|gb|ABA99057.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|255670425|dbj|BAH95752.1| Os12g0577100 [Oryza sativa Japonica Group]
Length = 414
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 12/101 (11%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER--VKRIKDY--AFVHFEDRQEAITAMN 147
M+KVK +V NL TEE L++ FE G V R V R Y FVHF R E A+
Sbjct: 1 MAKVKTAFVGNLPANVTEEYLRKLFEHCGEVVRVAVSRKGQYPVGFVHFASRTELDNAIK 60
Query: 148 ELNGQTVAGST------LEVSLAKP--PSDKKKKEEILRNR 180
E++G+TV G ++VS+A+P +DKK+ E ++ R
Sbjct: 61 EMDGETVRGPDRGATFRIQVSVARPVVENDKKRIREEVKTR 101
>gi|332377011|gb|AEE63645.1| unknown [Dendroctonus ponderosae]
Length = 356
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAM 146
P T K+ +V NL + + +L+ FE+YG+V +K+Y FVH E+ E A+
Sbjct: 2 PGFSTAGTFKI-FVGNLAEKTSVSELRPLFEKYGKVVECDVVKNYGFVHMENESEGREAI 60
Query: 147 NELNGQTVAGSTLEVSLAK 165
+LNGQ + G +++ AK
Sbjct: 61 QQLNGQMINGQSMKCEAAK 79
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + + A ++ P T T+ ++V NLT +++E F+++G V +++Y
Sbjct: 70 GQSMKCEAAKSRKAPQTPTIK----IFVGNLTDNTKAPQIRELFKKFGTVVECDIVRNYG 125
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FVH E + A+ +LNGQ V G ++V ++
Sbjct: 126 FVHLESSGDVNEAIKDLNGQIVDGQPMKVQIS 157
>gi|224112763|ref|XP_002316285.1| predicted protein [Populus trichocarpa]
gi|222865325|gb|EEF02456.1| predicted protein [Populus trichocarpa]
Length = 232
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQEAITAMNEL 149
L VRN+ C ++L+ FE++G V V KDY AFV F D EA+ A + +
Sbjct: 8 LLVRNIPLDCRPDELRGPFERFGVVRDVYIPKDYYTGEPRGFAFVQFVDPYEAMEAQHRM 67
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
NGQ AG + V LA ++ +K+ E +R+R R
Sbjct: 68 NGQIFAGRQISVVLA---AETRKRPEEMRHRAR 97
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVH 135
P+ + + E + K LYV+NL++ TE+ L+E FE YGR+ K R + + FV
Sbjct: 180 PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRKFGFVA 239
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
FE Q A+ A+ L+G+ + G + +A+ S ++++EI R E R Q
Sbjct: 240 FESPQSALAAVIGLHGKQL-GDNKFLYVARALSKAERQQEINRKLEERKRQ 289
>gi|28302297|gb|AAH46684.1| LOC398498 protein, partial [Xenopus laevis]
Length = 531
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N++ C ++++ FE+YGRV +KDYAFVH EA A+ LNG+ + G
Sbjct: 146 IFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKDIKGK 205
Query: 158 TLEVSLAK 165
+ V ++
Sbjct: 206 RINVEMSN 213
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N+ + +E ++ FE+YG V ++ YAFVH +EA A+ ELNG+ + G
Sbjct: 70 IFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELNGRELNGK 129
Query: 158 TLEVSLAKP 166
+ V L+KP
Sbjct: 130 KMLVELSKP 138
>gi|395544458|ref|XP_003774127.1| PREDICTED: RNA-binding protein 4 [Sarcophilus harrisii]
Length = 364
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT +L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNLELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL+ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRREFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP------GPSGAHAPLLT 205
+ V L V+LA+ K++++ IL N+ + + ++ GGP P+ P +
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYMQRLSTVRALGGPLLGSFQQPASYFLPAVP 412
Query: 206 GPP 208
PP
Sbjct: 413 QPP 415
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E+ L++ F Q+G++ VK ++D + FV+FE +EA A+ ++N
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V G L V A +K+ E +RR QM Q R
Sbjct: 253 GKEVRGRLLYVGRA------QKRVERQNELKRRFEQMKQDR 287
>gi|148230060|ref|NP_001080743.1| serine/arginine-rich splicing factor 2 [Xenopus laevis]
gi|28175397|gb|AAH45229.1| Sfrs2-prov protein [Xenopus laevis]
Length = 215
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|357167535|ref|XP_003581210.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like
[Brachypodium distachyon]
Length = 137
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRV--------ERVKRIKDYAFVHFEDRQEAITAMNEL 149
L++ L+Q+ TE+ L EAF +YG+V + R K + FV F +EA A +E+
Sbjct: 38 LFIGGLSQFATEDTLAEAFARYGQVLEATIVTDKMTNRSKGFGFVKFASEEEANKARDEM 97
Query: 150 NGQTVAGSTLEVSLAKPPSDK 170
NG+ + G + V +AK D+
Sbjct: 98 NGKVLNGRVIYVDIAKAKQDR 118
>gi|118379755|ref|XP_001023043.1| hypothetical protein TTHERM_00348880 [Tetrahymena thermophila]
gi|89304810|gb|EAS02798.1| hypothetical protein TTHERM_00348880 [Tetrahymena thermophila
SB210]
Length = 474
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 63 FKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRV 122
F KH + +II+ WA +EE + + L ++NL ++ + F+ +GR+
Sbjct: 154 FYKNKHFPNSKQEIIMKWASGEEERLGVSENSSHKLIIKNLPALISDASISNIFDNFGRI 213
Query: 123 ERVKRIKD--------YAFVHFEDRQEAITAMNELNGQT---VAGSTLEVSLAKPPSDKK 171
+++K I+D +AF+ + +++ A A+ LN Q + L+VS + S +K
Sbjct: 214 QQLKVIRDKKTSECKGHAFIKYYEKESAHLAVQNLNKQNIYLIQNKKLKVSFIE-KSYQK 272
Query: 172 KKEEILRNRERRMMQMMQGRGGPGPS 197
K+++IL+ ++ Q+ Q GP PS
Sbjct: 273 KQKQILKYMKQNTNQITQ--NGPLPS 296
>gi|392404677|ref|YP_006441289.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390612631|gb|AFM13783.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 141
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+YV NL T+E+L+ AFE +G+V VK ++D +AFV ED + A A+ E+
Sbjct: 3 IYVGNLAYNATDEELRSAFEAFGQVTSVKIVRDRDTGRSRGFAFVEMEDGEGAQNAVAEM 62
Query: 150 NGQTVAGSTLEVSLAKP 166
NG+ + G L V+ A+P
Sbjct: 63 NGKDLKGRNLVVNEARP 79
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVK---VLYVRNLTQYCTEEKLKEAFEQYGRVERVK 126
L R C + VD +++ + E SK +Y++NL +E LK F +YG+ VK
Sbjct: 161 LLRDCTVFVDRFKSRKDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVK 220
Query: 127 RIKD-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+KD + FV F + + A A+ E+NGQ + G T+ V A+ +++
Sbjct: 221 VMKDDNGKSKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQ 272
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAM 146
S + ++++NL + + L E F +G++ K + D Y FVH++D+ A A+
Sbjct: 95 SGIGNVFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEGSRGYGFVHYQDQSAADRAI 154
Query: 147 NELNGQTVAGSTLEVSLAKPPSDK 170
E+NG+ + T+ V K D+
Sbjct: 155 EEMNGKLLRDCTVFVDRFKSRKDR 178
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 15/131 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL ++++L+EAF + G + + ++D + FV F +EA A+ E+N
Sbjct: 280 LYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMN 339
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP---GPSGAHAPLLTGP 207
G+ ++G + V+LA+ ++ + E ++R M+ GRG P P AP+ G
Sbjct: 340 GKLISGKPVYVALAQRKEVRRAQLEAQHAQQR--AGMVVGRGMPMGQPPMYGAAPMFYGQ 397
Query: 208 PMPRGSVPLQA 218
P G +P QA
Sbjct: 398 P---GQLPPQA 405
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 15/124 (12%)
Query: 69 LLSRGCDIIV-DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR 127
+L G ++ V + Q+ PD + + YV+N+ T+ L + FE +G+V
Sbjct: 143 MLIAGTEVFVGHFQKRQDRPDADDWTNC---YVKNIPTQWTDADLLKEFEPFGKVLSAVV 199
Query: 128 IKD---------YAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKPPSDKK-KKEEI 176
+KD + FV++E+ A A++ LNG++ AG L+ + + K+ ++E
Sbjct: 200 MKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERE 259
Query: 177 LRNR 180
LRN+
Sbjct: 260 LRNK 263
>gi|50415109|gb|AAH77356.1| LOC398498 protein [Xenopus laevis]
Length = 471
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N++ C ++++ FE+YGRV +KDYAFVH EA A+ LNG+ + G
Sbjct: 86 IFVGNVSSSCEAAEIRKIFEEYGRVLECDIVKDYAFVHMTRESEARAAIEALNGKDIKGK 145
Query: 158 TLEVSLAK 165
+ V ++
Sbjct: 146 RINVEMSN 153
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N+ + +E ++ FE+YG V ++ YAFVH +EA A+ ELNG+ + G
Sbjct: 10 IFVGNIDERTSEGEVTALFERYGAVLNCAVMRQYAFVHMRGTREATKAVEELNGRELNGK 69
Query: 158 TLEVSLAKP 166
+ V L+KP
Sbjct: 70 KMLVELSKP 78
>gi|45360753|ref|NP_989050.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|38174074|gb|AAH61344.1| RNA binding motif protein 14 [Xenopus (Silurana) tropicalis]
gi|89269922|emb|CAJ81697.1| novel protein containing RNA recognition motifs. (a.k.a. RRM, RBD,
or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 468
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N+ T+E++ E FE+YG V +K YAFVH +EA A+ +LNG+ + G
Sbjct: 10 IFVGNVDDSTTQEEITELFERYGTVVNCAVMKQYAFVHMRGSEEATKAVEDLNGRELNGK 69
Query: 158 TLEVSLAKP 166
+ V L+KP
Sbjct: 70 KMLVELSKP 78
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N++ C ++++ FE++GRV +KDYAFVH E+ A+ LNG+ V G
Sbjct: 86 IFVGNVSSSCEVSEIRKMFEEHGRVVECDIVKDYAFVHMTRESESRAAIEALNGKEVKGK 145
Query: 158 TLEVSLA 164
+ V ++
Sbjct: 146 RINVEMS 152
>gi|426346592|ref|XP_004040960.1| PREDICTED: serine/arginine-rich splicing factor 2 [Gorilla gorilla
gorilla]
Length = 241
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|358009411|pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
gi|358009412|pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
gi|358009414|pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 19/114 (16%)
Query: 65 TGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER 124
TG + RG + + P PD E M+ +KV NLT + + L+ FE+YGRV
Sbjct: 25 TGGQQMGRGS---MSYGRP--PPDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGD 76
Query: 125 V--------KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA---KPP 167
V K + +AFV F D+++A AM+ ++G + G L V +A +PP
Sbjct: 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130
>gi|171056877|ref|YP_001789226.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
gi|170774322|gb|ACB32461.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
Length = 157
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
LYV NL +E L EAF Q+G V K R K + FV EA A+N L
Sbjct: 5 LYVGNLAYSVRDEDLNEAFSQFGAVNSAKVMMDRETGRSKGFGFVEMGSDPEAQAAINGL 64
Query: 150 NGQTVAGSTLEVSLAKPPSDK 170
NGQ + G + V+ A+P DK
Sbjct: 65 NGQAIGGRAIVVNEARPREDK 85
>gi|255584869|ref|XP_002533150.1| serine/arginine rich splicing factor, putative [Ricinus communis]
gi|223527045|gb|EEF29231.1| serine/arginine rich splicing factor, putative [Ricinus communis]
Length = 265
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQEAITAMNEL 149
L VRN+ C E+L+ FE++G V V KDY AFV F D +A+ A + +
Sbjct: 45 LLVRNIPLDCRPEELRAPFERFGVVRDVYIPKDYYTGEPRGFAFVQFVDTYDAMEAQHRM 104
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
NGQ AG + V +A ++ +K+ E +R R R
Sbjct: 105 NGQIFAGREISVVVA---AETRKRPEEMRQRSR 134
>gi|149061996|gb|EDM12419.1| rCG48334, isoform CRA_d [Rattus norvegicus]
Length = 173
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTL 159
YAFVH E ++A+ A+ L+ G +L
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGESL 141
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KR 127
+ V +++P +EPD E M+KVK +++ L Y E+++++ F+ YG ++RV +
Sbjct: 310 VKVAFSEPLQEPDPEIMAKVKSVFIDGLPPYWDEDRVRKHFQGYGEIKRVTLARNMPAAK 369
Query: 128 IKDYAFVHFEDRQEAITAMNELN 150
KD+ FV F + AI + ++N
Sbjct: 370 RKDFGFVDFMTHEAAIACIEDVN 392
>gi|403351671|gb|EJY75331.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
gi|403370539|gb|EJY85135.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 343
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQ 152
S +YV L + E+ LK++F ++GR++++ +YAF+ +E+ ++A+ A+ E+NG+
Sbjct: 91 SSFTQVYVAGLHRRTREDDLKDSFSKFGRIKQLVLKHNYAFIDYENHEDAVAALREMNGK 150
Query: 153 T-VAGSTLEVSLAKPPSDKK----KKEEILRN 179
T V G L V + P K+ K+E++ N
Sbjct: 151 TFVNGEELAVEQSVPGGKKRKSGPKREDVCYN 182
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAP---LLTGPP 208
+ V L V+LA+ K++++ IL N+ + + M+ G P P L P
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFLPAVP 412
Query: 209 MPRGSVPLQAA 219
P P A+
Sbjct: 413 QPPAQSPYYAS 423
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E L++ F Q+G++ VK ++D + FV+FE ++A A+ ++N
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A +K+ E +RR QM Q R
Sbjct: 253 GKEVSGRLLYVGRA------QKRVERQNELKRRFEQMKQDR 287
>gi|387018162|gb|AFJ51199.1| RNA-binding protein 14-like [Crotalus adamanteus]
Length = 596
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N++ CT +L+ F+++G V +KDYAFVH E ++A TA+ LNG+ + G
Sbjct: 85 IFVGNVSATCTSGELRVLFQEFGPVIECDIVKDYAFVHMEKDEDARTAIEHLNGREIKGK 144
Query: 158 TLEVSLAK 165
+ V L+
Sbjct: 145 RINVELSN 152
>gi|28175406|gb|AAH45210.1| MGC52864 protein [Xenopus laevis]
Length = 460
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N+ T+E++ E FE+YG V +K YAFVH +EA A+ +LNG+ + G
Sbjct: 3 IFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELNGK 62
Query: 158 TLEVSLAKP 166
+ V L+KP
Sbjct: 63 KMLVELSKP 71
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N++ C ++++ FE+YGRV +KDYAFVH EA A+ LNG+ + G
Sbjct: 79 IFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKDYAFVHMTRESEARAAIEALNGKEIKGK 138
Query: 158 TLEVSLA 164
+ V ++
Sbjct: 139 RINVEMS 145
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 15/131 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL ++++L+EAF + G + + ++D + FV F +EA A+ E+N
Sbjct: 334 LYVKNLDDQLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMN 393
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP---GPSGAHAPLLTGP 207
G+ ++G + V+LA+ ++ + E ++R M+ GRG P P AP+ G
Sbjct: 394 GKLISGKPVYVALAQRKEVRRAQLEAQHAQQR--AGMVVGRGMPMGQPPMYGAAPMFYGQ 451
Query: 208 PMPRGSVPLQA 218
P G +P QA
Sbjct: 452 P---GQLPPQA 459
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 15/124 (12%)
Query: 69 LLSRGCDIIV-DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR 127
+L G ++ V + Q+ PD + + YV+N+ T+ L + FE +G+V
Sbjct: 197 MLIAGTEVFVGQFQKRQDRPDADDWTNC---YVKNIPTQWTDADLLKEFEPFGKVLSAVV 253
Query: 128 IKD---------YAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKPPSDKK-KKEEI 176
+KD + FV++E+ A A++ LNG++ AG L+ + + K+ ++E
Sbjct: 254 MKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERE 313
Query: 177 LRNR 180
LRN+
Sbjct: 314 LRNK 317
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V +A+P EPD E M++VK ++V L + E++++E F+ YG +ER+ + K
Sbjct: 486 VAFAEPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRK 545
Query: 130 DYAFVHFEDRQEAITAMNELN 150
D+ FV F + A++ ++ +N
Sbjct: 546 DFGFVDFTTHEAALSCIDSVN 566
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAI 143
+SK ++V L + EE +K+ FE+ G V V+ + K YAFV F +++ A
Sbjct: 322 ISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHAS 381
Query: 144 TAMNELNGQTVAG 156
A++E+ + G
Sbjct: 382 RALSEMKNPVICG 394
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP------GPSGAHAPLLT 205
+ V L V+LA+ K++++ IL N+ + + M+ G P P+ P +
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYMQRLSTMRALGSPFLGSFQQPTSYFLPAVP 412
Query: 206 GPP 208
PP
Sbjct: 413 QPP 415
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E+ L+E F Q+G++ VK ++D + FV+FE +EA A+ +N
Sbjct: 193 IYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A +K+ E +RR QM Q R
Sbjct: 253 GKEVSGRLLYVGRA------QKRVERQNELKRRFEQMKQDR 287
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVH 135
P+ + + E + K LYV+NL++ TE+ L+E FE YGR+ K R + + FV
Sbjct: 190 PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVA 249
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
+E+ Q A+ A+ L+G+ + G + +A+ S ++++EI R E R Q
Sbjct: 250 YENPQSALAAVIGLHGKQL-GDNKFLYVARALSKAERQQEINRKLEERKRQ 299
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 303 LYVKNLDDSINDEKLRKEFSPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 362
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+ V L V+LA+ K++++ IL N+ + + ++ GGP
Sbjct: 363 RIVGTKPLYVALAQ---RKEERKAILTNQYMQRLSTVRALGGP 402
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQY-----GRVERVKRIKD-------YAFVHFEDRQEAITA 145
+YV+NL E L+E F Q+ G++ VK ++D + FV+FE +EA A
Sbjct: 193 IYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKA 252
Query: 146 MNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
+ ++NG+ V G L V A +K+ E +R+ QM Q R
Sbjct: 253 VMDMNGKEVRGRLLYVGRA------QKRMERQNELKRKFEQMKQDR 292
>gi|148222587|ref|NP_001079614.1| RNA binding motif protein 14 [Xenopus laevis]
gi|80477004|gb|AAI08787.1| MGC52864 protein [Xenopus laevis]
Length = 467
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N+ T+E++ E FE+YG V +K YAFVH +EA A+ +LNG+ + G
Sbjct: 10 IFVGNVDDRTTQEEITELFERYGTVVNCAVMKQYAFVHMRGAEEATKAVEDLNGRELNGK 69
Query: 158 TLEVSLAKP 166
+ V L+KP
Sbjct: 70 KMLVELSKP 78
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V N++ C ++++ FE+YGRV +KDYAFVH EA A+ LNG+ + G
Sbjct: 86 IFVGNVSSSCEGSEIRKIFEEYGRVVECDIVKDYAFVHMTRESEARAAIEALNGKEIKGK 145
Query: 158 TLEVSLA 164
+ V ++
Sbjct: 146 RINVEMS 152
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 21/145 (14%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV+NL T++ L++ F G + + +KD + FV + ++A A+NE+
Sbjct: 297 LYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEM 356
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGG-PGP-SGAHAPLLTGP 207
NG+ + G + V+LA+ ++ + E N QGRG PGP GA+ + P
Sbjct: 357 NGKIILGKPIFVALAQRRDVRRAQLEAQHN---------QGRGNLPGPMGGAYPGAVPMP 407
Query: 208 PMPRGSVPLQAALSSTRM--GRGDY 230
M R +Q A +M GRG Y
Sbjct: 408 GMYRPGPGMQPAYPVPQMMQGRGGY 432
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--- 130
C I+ DP + S V ++V+NL + ++L + F +G + K + D
Sbjct: 80 CRIMWSQRDP-----SMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFGNILSCKVVTDKAT 134
Query: 131 -----YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163
Y +VH+E + A +A+ +L+G + G ++V +
Sbjct: 135 GLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGV 172
>gi|449451689|ref|XP_004143594.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
1 [Cucumis sativus]
gi|449451691|ref|XP_004143595.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
2 [Cucumis sativus]
gi|449507559|ref|XP_004163066.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
1 [Cucumis sativus]
gi|449507562|ref|XP_004163067.1| PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform
2 [Cucumis sativus]
Length = 309
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
LYV L+ L + F +YGRV V +DYAFV F D ++A A LNG+ V GS
Sbjct: 13 LYVGRLSSRTRSRDLDDLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYSLNGRDVHGS 72
Query: 158 TLEVSLAK 165
+ V +AK
Sbjct: 73 RIIVEIAK 80
>gi|388495254|gb|AFK35693.1| unknown [Lotus japonicus]
Length = 300
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
LYV L+ L+ F +YGRV V +DYAFV F D ++A A L+G+ V GS
Sbjct: 13 LYVGRLSSRTRSRDLERVFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYNLDGRDVDGS 72
Query: 158 TLEVSLAK 165
L V AK
Sbjct: 73 RLIVEFAK 80
>gi|146182442|ref|XP_001024607.2| hypothetical protein TTHERM_00301790 [Tetrahymena thermophila]
gi|146143856|gb|EAS04362.2| hypothetical protein TTHERM_00301790 [Tetrahymena thermophila
SB210]
Length = 407
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTE-EKLKEAFEQYGRVERVKRIKDYA 132
C I V W +P + E + KVL V+N++ CTE K+K+AF YG V R++R +A
Sbjct: 167 CKIDVCWKEPDFDIIKELSMQTKVLCVKNISS-CTETSKIKDAFSVYGTVVRIQRYSTHA 225
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTL-EVSLAKPPSDKKKKEEILRNR 180
FV F + + A A+ L+ + G + + AK +++ E++ +NR
Sbjct: 226 FVEFLNIESAKNALAALSDKRFEGGIIWHIYPAKKLDIERQYEDVDKNR 274
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 22/123 (17%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++NL T+++L+E F +G++ K ++D FV F R+EA A+ E+N
Sbjct: 406 LYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMN 465
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM---QMMQGRGGPGPSGAHAPLLTGP 207
G+ ++G L V+ A+ R ER+ M Q Q R P L P
Sbjct: 466 GKMISGKPLYVAFAQ------------RKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYP 513
Query: 208 PMP 210
PMP
Sbjct: 514 PMP 516
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHF 136
QE ++ +K ++V+NL++ T+E L + F +YG + + + + FV+F
Sbjct: 289 QERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNF 348
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
E +A A+ ELNG+ + V A +KK E + +RR Q M+
Sbjct: 349 ESPDDAARAVEELNGKKINDKEWYVGRA------QKKSEREMDLKRRFEQSMK 395
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFE 137
Q + D T +V LYV+NL +E+L++AF +G + K R K + FV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP 196
+EA A+ E+NG+ VA L V+LA+ K++++ L N M +M R P P
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQ---RKEERQAYLTN--EYMQRMASVRAVPNP 395
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+Y++N + +E+LK+ F ++G VK + D + FV FE ++A A++E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ ++G + V A +KK E +R+ QM Q R
Sbjct: 253 GKELSGKQIYVGRA------QKKVERQTELKRKFEQMKQDR 287
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V +A+P EPD E M++VK ++V L + E++++E F+ YG +ER+ + K
Sbjct: 486 VAFAEPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRK 545
Query: 130 DYAFVHFEDRQEAITAMNELN 150
D+ FV F + A++ ++ +N
Sbjct: 546 DFGFVDFTTHEAALSCIDSVN 566
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAI 143
+SK ++V L + EE +K+ FE+ G V V+ + K YAFV F +++ A
Sbjct: 322 ISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHAS 381
Query: 144 TAMNELNGQTVAG 156
A++E+ + G
Sbjct: 382 RALSEMKNPVICG 394
>gi|297701877|ref|XP_002827924.1| PREDICTED: uncharacterized protein LOC100439801 isoform 2 [Pongo
abelii]
Length = 287
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 74 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 130
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 131 KRDAEDAMDAMDGAVLDGRELRVQMAR 157
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAIT 144
++KV +YV+N+ TEE+L++ F Q G + K + D + FV F +EAI
Sbjct: 300 IAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAID 359
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEI-LRNRERRMMQMMQGRGGPGPSGAHAPL 203
A+ +GQ G L V++A+ D+K + ++ NR P G +APL
Sbjct: 360 AVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNP---GTYAPL 416
Query: 204 L---TGPPMPRGSVPL 216
T P M S PL
Sbjct: 417 YYTNTHPGMVYQSYPL 432
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++NL +E+ L+E F ++G++ + KD YAFV+F++ ++A A +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILR 178
G L V A+ K ++E++LR
Sbjct: 263 GTKFGSKCLYVGRAQ---KKAEREQLLR 287
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
++V+NL + T L++ F+++G + K + + Y FV FE A A+ LN
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRN 179
VA + V +D+ K EE N
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPEEKYTN 202
>gi|387018630|gb|AFJ51433.1| Serine/arginine-rich splicing factor 2 [Crotalus adamanteus]
Length = 221
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
P+ + + E + K LYV+NL++ TE+ L+E FE YGR+ K + D + FV
Sbjct: 190 PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVA 249
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
+E+ Q A+ A+ L+G+ + G + +A+ S ++++EI R E R Q
Sbjct: 250 YENPQSALAAVIGLHGKQL-GDNKFLYVARALSKAERQQEINRKLEERKRQ 299
>gi|356576299|ref|XP_003556270.1| PREDICTED: uncharacterized protein LOC100791652 [Glycine max]
Length = 386
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFE 137
E E K K L+V L+ Y +E+ L+ AFE +G + VK I D YAFV +
Sbjct: 287 EASQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYT 346
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKP 166
+ A A+ E+NG+ + G + V +AKP
Sbjct: 347 TEEAASAALKEMNGKIINGWMIVVDVAKP 375
>gi|296087958|emb|CBI35241.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFE 137
E + T K K L+V L+ Y +E+ L+ AFE +G + VK I D YAF+ +
Sbjct: 213 EANQPTNIKTKKLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYT 272
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170
+ A A+ E+NG+ + G + V +AKP K
Sbjct: 273 TEEAASAALKEMNGKIINGWMIVVDVAKPTPQK 305
>gi|1149523|emb|CAA64070.1| Neosin [Mus musculus]
Length = 153
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAM 146
P E + ++ L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+
Sbjct: 15 PLPEALVRMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAI 74
Query: 147 NELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
L+ + G + V +K S K +
Sbjct: 75 RNLHHYKLHGVNINVEASKNKSKASTKLHV 104
>gi|225464121|ref|XP_002264164.1| PREDICTED: uncharacterized protein LOC100265361 [Vitis vinifera]
Length = 409
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFE 137
E + T K K L+V L+ Y +E+ L+ AFE +G + VK I D YAF+ +
Sbjct: 307 EANQPTNIKTKKLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYT 366
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170
+ A A+ E+NG+ + G + V +AKP K
Sbjct: 367 TEEAASAALKEMNGKIINGWMIVVDVAKPTPQK 399
>gi|147867424|emb|CAN83272.1| hypothetical protein VITISV_001132 [Vitis vinifera]
Length = 408
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFE 137
E + T K K L+V L+ Y +E+ L+ AFE +G + VK I D YAF+ +
Sbjct: 306 EANQPTNIKXKKLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYS 365
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170
+ A A+ E+NG+ + G + V +AKP K
Sbjct: 366 TEEAASAALKEMNGKIINGWMIVVDVAKPTPQK 398
>gi|426346596|ref|XP_004040962.1| PREDICTED: serine/arginine-rich splicing factor 2 [Gorilla gorilla
gorilla]
Length = 221
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
P+ + + E + K LYV+NL++ TE+ L+E FE YGR+ K + D + FV
Sbjct: 190 PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVA 249
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
+E+ Q A+ A+ L+G+ + G + +A+ S ++++EI R E R Q
Sbjct: 250 YENPQSALAAVIGLHGKQL-GDNKFLYVARALSKAERQQEINRKLEERKRQ 299
>gi|327264866|ref|XP_003217232.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Anolis
carolinensis]
Length = 221
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V +A+P +EPD E M++VK +++ L Y E+++K+ F+ YG +ERV +
Sbjct: 671 VAFAEPIKEPDAEVMAQVKSVFIDGLPPYWDEDRVKDRFKAYGVIERVVLASNMSSAKRN 730
Query: 130 DYAFVHFEDRQEAITAMNELN 150
D+ FV+F + A+ + N
Sbjct: 731 DFGFVNFSTHEAALACIEATN 751
>gi|224110196|ref|XP_002315444.1| predicted protein [Populus trichocarpa]
gi|222864484|gb|EEF01615.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 12/105 (11%)
Query: 75 DIIVDWADPQEEPDTETMSKVKV--LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-- 130
D +++ A+P + + ++ V+ L++ L+ Y +E+ L+ AFE +G + VK I D
Sbjct: 196 DSLINSANPPDSSEASQITHVRTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 255
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK--PP 167
YAFV + + A +A+ E+NG+ + G + V +AK PP
Sbjct: 256 SKRSKGYAFVKYTTEEAASSALKEMNGKIINGWMIVVDVAKSNPP 300
>gi|224074970|ref|XP_002194754.1| PREDICTED: serine/arginine-rich splicing factor 2 [Taeniopygia
guttata]
Length = 221
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKVD---NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|26352530|dbj|BAC39895.1| unnamed protein product [Mus musculus]
gi|74183052|dbj|BAE20479.1| unnamed protein product [Mus musculus]
gi|74186507|dbj|BAE34743.1| unnamed protein product [Mus musculus]
Length = 168
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 20/141 (14%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTL 159
++A+ A+ L+ G +L
Sbjct: 121 AEDAVEAIRGLDNTEFQGESL 141
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY-------AFVHFEDRQEAITAMNELN 150
LY++NL + +EKL+E F +YG + K ++D FV F+ ++A A+ E+N
Sbjct: 319 LYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMN 378
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRG------GPGPSGAHAPLL 204
G+ V L V+LA+ D+K K + + + R + M G PG G L
Sbjct: 379 GKMVGSKPLYVALAQRKEDRKAKLQA-QFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLF 437
Query: 205 TGPPMPRGSVPLQAALSSTRMG 226
G P P P Q + R G
Sbjct: 438 YGQPPPAFINPQQPLMPGMRPG 459
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHF 136
Q+ + + K +YV+NL+ T+++LKE F +YG + ++D + FV+F
Sbjct: 202 QDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNF 261
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK--KEEILRN 179
E+ A A+ ELNG+ L V A+ S+++ KE+ +N
Sbjct: 262 ENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEKN 306
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F +G + K R K + FV F +EA A++E+NG
Sbjct: 296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAP 202
+ VA L V+LA ++K+E + + +M R GP P + P
Sbjct: 356 RIVATKPLYVALA-----QRKEERQAHLTNQYIQRMASVRSGPNPVNPYQP 401
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G + + W+ Q +P S V ++++NL + + L + F +G + K + D
Sbjct: 78 KGKPVRIMWS--QRDPSLR-RSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDE 134
Query: 131 -----YAFVHFEDRQEAITAMNELNG 151
+ FVHFE + A A+ ++NG
Sbjct: 135 NGSKGHGFVHFETEEAAERAIEKMNG 160
>gi|406606542|emb|CCH42041.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
[Wickerhamomyces ciferrii]
Length = 482
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNE 148
K+LYV L + +E++L+E F Q+G ++ VK + D YAF+ F++ A A E
Sbjct: 102 KILYVGGLDKTISEDQLREIFSQHGEIDNVKILFDKNKQNFNYAFIEFQNELNASNAFQE 161
Query: 149 LNGQTVAGSTLEVSLAKPPSDKKKKEE 175
LN +T+ S + ++ A K E
Sbjct: 162 LNNKTLQNSVISINWAYQSQQAKNSSE 188
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 15/137 (10%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFE 137
Q + D +T + LYV+NL ++EKL+ F YG + K + K + FV F
Sbjct: 282 QMKQDRQTRYQGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEGGHSKGFGFVCFS 341
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP--- 194
+EA A+ E+NG V L V+LA+ K++++ IL N+ + + +Q G P
Sbjct: 342 SPEEATKAVTEMNGCIVGTKPLYVALAQ---RKEERKAILTNQYMQRLSTVQALGRPVMG 398
Query: 195 ---GPSGAHAPLLTGPP 208
P+ P + PP
Sbjct: 399 SFQQPNSYFLPAVAQPP 415
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E+ L++ F ++G++ VK ++D + FV+FE +EA A++ +N
Sbjct: 193 IYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A +K+ E +RR QM Q R
Sbjct: 253 GKEVSGQQLYVGRA------QKRGERQNELKRRFEQMKQDR 287
>gi|47087067|ref|NP_998547.1| splicing factor, arginine/serine-rich 2 [Danio rerio]
gi|28279759|gb|AAH46045.1| Splicing factor, arginine/serine-rich 2 [Danio rerio]
Length = 225
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGALLDGRELRVQMAR 91
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 84 QEEPDTETMSKVK--VLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFV 134
E+ E M K + LYV+NL + +E LK+ FE +G + K R K + FV
Sbjct: 303 HEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFV 362
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
FE +EA TA+ E+N + V L V+LA+ D++ +
Sbjct: 363 CFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQ 401
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
++++NL + + + + F +G + K K Y FVHFE + A A+ ++N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKVN 181
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK 173
G +AG + V +P + + ++
Sbjct: 182 GMLLAGKKVFVGKFQPRAQRNRE 204
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAI 143
ET K +YV+N + +E L++ F +YG + + K + FV F + +EA
Sbjct: 207 ETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSCDVMTSDGKSKGFGFVAFAEPEEAE 266
Query: 144 TAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
A+ LN V GS L++ + + ++ E+ + E+ ++ MQ
Sbjct: 267 AAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQ 312
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +++LKE F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
+ V L V+LA+ K++++ IL N+ RR +
Sbjct: 356 RIVGTKPLYVALAQ---RKEERKAILTNQYRRRL 386
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E+ L++ F Q+G+ + VK ++D + F++FE +EA A++ +N
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A+ ++++ + L+ R +M Q Q R
Sbjct: 253 GKEVSGQLLYVGRAQKRAERQNE---LKRRFEQMKQERQNR 290
>gi|440295453|gb|ELP88366.1| multiple RNA-binding domain containing protein, putative [Entamoeba
invadens IP1]
Length = 685
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAF 133
D + P+ E + ++L V NL C+E+ ++EAFE++G + V + K +AF
Sbjct: 200 DEIQVPENENWEEGRIL-VNNLPYACSEQDVREAFEKFGEITEVHLPIDKVSGKTKGFAF 258
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
V + Q+A+ A NE++GQ + G + V+ AK
Sbjct: 259 VMYVVPQDAVKAFNEMDGQVIKGRIIHVNYAK 290
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++N+ TE+ L++ F QYG++ V K+ + F+ F A+ AM
Sbjct: 509 LYIKNVNPKTTEDTLRKVFTQYGQIHSVSISKNPTSSKNVFCFLEFARHSSALNAMKNAQ 568
Query: 151 GQTVAGSTLEVSLAKPPSD-----KKKKEE 175
GQ V G+ + + L+ P D K+KK E
Sbjct: 569 GQLVDGNAIAIELSIPKKDDFTHAKRKKAE 598
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK-------DYAFVHFEDRQEAITAMNELN 150
+ V+ L TE+ +KEAF+ +G + K ++ ++AF+ F EA A+ ++N
Sbjct: 4 IIVKGLPHVATEKTIKEAFQSFGNITDCKLVRTKEGVSREFAFLGFSTESEAQNAIEKMN 63
Query: 151 GQTVAGSTLEVSLAKPPSDK 170
+ S + VS+AK DK
Sbjct: 64 NAYILSSKINVSIAKKIGDK 83
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 357
Query: 152 QTVAGSTLEVSLAKPPSDKKK---KEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGPP 208
+ V L V+LA+ D+K + + R RM QM Q G G P + PP
Sbjct: 358 RIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGTGGYFVPTI--PP 415
Query: 209 MPRGSVPLQ 217
R P Q
Sbjct: 416 AQRFYGPAQ 424
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVL---YVRNLTQYCTEEKLKEAFEQYGRVERV 125
+L G + V P++E + E K K+ YV+N + ++E L+E FE+YGR+
Sbjct: 162 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSH 221
Query: 126 KRI-------KDYAFVHFEDRQEAITAMNELNG-QTVAGSTLEVSLAKPPSDKKKK 173
K + + + FV FED A A ELNG + V G L V A+ ++++K+
Sbjct: 222 KVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKE 277
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G I + W+ Q +P S V ++++NL + + + + F +G + K +D
Sbjct: 78 KGRPIRIMWS--QRDPSLRK-SGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQDE 134
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
Y FVHFE + A ++ ++NG + G + V P +++K+
Sbjct: 135 TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 183
>gi|355718912|gb|AES06428.1| splicing factor, arginine/serine-rich 2 [Mustela putorius furo]
Length = 108
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFE 137
Q + D T +V LYV+NL +E+L++AF +G + K R K + FV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP 196
+EA A+ E+NG+ VA L V+LA ++K+E + M +M R P P
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALA-----QRKEERQAHLTNQYMQRMASVRAVPNP 395
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+Y++N + +E+LK+ F ++G VK + D + FV FE ++A A++E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ + G + V A +KK E +R+ QM Q R
Sbjct: 253 GKELNGKQIYVGRA------QKKVERQTELKRKFEQMKQDR 287
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F +G + K R K + FV F +EA A++E+NG
Sbjct: 271 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNG 330
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAP 202
+ VA L V+LA+ K++++ L N + + +M R GP P + P
Sbjct: 331 RIVATKPLYVALAQ---RKEERQAHLTN--QYIQRMASVRSGPNPVNPYQP 376
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G + + W+ Q +P S V ++++NL + + L + F +G + K + D
Sbjct: 53 KGKPVRIMWS--QRDPSLR-RSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDE 109
Query: 131 -----YAFVHFEDRQEAITAMNELNG 151
+ FVHFE + A A+ ++NG
Sbjct: 110 NGSKGHGFVHFETEEAAERAIEKMNG 135
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 357
Query: 152 QTVAGSTLEVSLAKPPSDKKK---KEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGPP 208
+ V L V+LA+ D+K + + R RM QM Q G G P + PP
Sbjct: 358 RIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQIFQPGGTGGYFVPTI--PP 415
Query: 209 MPRGSVPLQ 217
R P Q
Sbjct: 416 AQRFYGPAQ 424
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVL---YVRNLTQYCTEEKLKEAFEQYGRVERV 125
+L G + V P++E + E K K+ YV+N + ++E L+E FE+YGR+
Sbjct: 162 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLREMFEKYGRITSH 221
Query: 126 KRI-------KDYAFVHFEDRQEAITAMNELNG-QTVAGSTLEVSLAKPPSDKKKK 173
K + + + FV FED A A ELNG + V G L V A+ ++++K+
Sbjct: 222 KVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKE 277
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G I + W+ Q +P S V ++++NL + + + + F +G + K +D
Sbjct: 78 KGRPIRIMWS--QRDPSLRK-SGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDE 134
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
Y FVHFE + A ++ ++NG + G + V P +++K+
Sbjct: 135 TGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 183
>gi|47604918|ref|NP_001001305.1| serine/arginine-rich splicing factor 2 [Gallus gallus]
gi|266991|sp|P30352.1|SRSF2_CHICK RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Protein PR264; AltName: Full=Splicing component, 35
kDa; AltName: Full=Splicing factor SC35; Short=SC-35;
AltName: Full=Splicing factor, arginine/serine-rich 2
gi|63752|emb|CAA44306.1| PR 264 [Gallus gallus]
gi|228503|prf||1805195A RNA-binding protein PR264
Length = 221
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKVD---NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+ V L V+LA + ++ IL N+ + + M+ GGP
Sbjct: 356 RIVGTKPLYVALA------EGRKAILTNQYMQRLSTMRALGGP 392
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E++L++ F Q+G++ VK ++D + FV+FE +EA A+ +N
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A +K+ E +RR QM Q R
Sbjct: 253 GREVSGRLLYVGRA------QKRVERQNELKRRFEQMKQDR 287
>gi|426346594|ref|XP_004040961.1| PREDICTED: serine/arginine-rich splicing factor 2 [Gorilla gorilla
gorilla]
Length = 219
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 19/150 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++NL + +L++AFE++G + K + D + FV F EA A++E+N
Sbjct: 271 LYLKNLDDSVDDAQLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMN 330
Query: 151 GQTVAGSTLEVSLAKPPSDKK--------KKEEILRNRERRMMQMMQGRGGPGPSGAHA- 201
Q + L V+LA+ D+K ++ LR + M QM G G P+ A
Sbjct: 331 NQKLGNKPLYVALAQRKEDRKAQLASQLVQRVNALRFQTVGMGQMYSGSGYFFPTMPQAG 390
Query: 202 PLLTGPPMPRGSVPLQAA---LSSTRMGRG 228
P +P G+ ++A +SS MGRG
Sbjct: 391 PRAYLTALPAGAPQVRATPRWMSSPTMGRG 420
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAI 143
ET K +YV+N + T++ L + F ++G+++ +K+ + FV FE+ ++A
Sbjct: 160 ETTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVMKEDDKSKGFGFVSFENPEDAE 219
Query: 144 TAMNELNG-QTVAGSTLEVSLAKPPSDK----KKKEEILR 178
A+ E+N Q +G L V A+ +++ K++ E+L+
Sbjct: 220 AAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLK 259
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 26/147 (17%)
Query: 84 QEEPDTETMSKVK--VLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------------- 126
E+ E M K + LYV+NL + +E LK+ FE +G + K
Sbjct: 330 HEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFENFGNITSAKVGLVPLEFFISLFQV 389
Query: 127 ------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
R K + FV FE +EA TA+ E+N + V L V+LA+ D++ ++
Sbjct: 390 MTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRA--QLASQY 447
Query: 181 ERRMMQMMQGRGGPGPSGAHAPLLTGP 207
+R+ M PG G + P TGP
Sbjct: 448 MQRLASMRMHSNVPG-GGMYNPAQTGP 473
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAI 143
ET K +YV+N + +E L++ F +YG + + K + FV F +EA
Sbjct: 234 ETAKKFTNVYVKNFGDHYNKETLEKLFAKYGAITSCDVMTSDGKSKGFGFVAFAQPEEAE 293
Query: 144 TAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
A+ LN V GS L++ + + ++ E+ + E+ ++ MQ
Sbjct: 294 AAVQALNDSAVDGSDLKLHVCRAQKKSERHAELKKKHEQHKVERMQ 339
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRV---------ERVKRI---------KDYAFVHFEDR 139
++++NL + + + + F +G + E +K + K Y FVHFE
Sbjct: 138 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFETE 197
Query: 140 QEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
+ A A+ ++NG +AG + V +P + + ++
Sbjct: 198 EAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRE 231
>gi|170033977|ref|XP_001844852.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167875097|gb|EDS38480.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 156
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 80 WADPQEEPDTETM----SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD----- 130
W PQ+ ++ S+ L+VRNL + ++L F +G + RV +KD
Sbjct: 52 WEHPQQFFSCKSTKNPPSQGDTLFVRNLAKSVDVQQLTTLFAPFGTIARVNIVKDALGTS 111
Query: 131 --YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
+ FVHF + +A A+ ++NG +AG L V+ A PP KK
Sbjct: 112 KGFGFVHFTNASDAGKALAKMNGHLLAGRKLHVAPAHPPKRGTKK 156
>gi|156349371|ref|XP_001622030.1| hypothetical protein NEMVEDRAFT_v1g248588 [Nematostella vectensis]
gi|156208427|gb|EDO29930.1| predicted protein [Nematostella vectensis]
Length = 278
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
LYV NL C + +L+E F +YG V + R+K++AFVH R+ A A+ L+ G+
Sbjct: 54 LYVGNLPDDCQKHQLQELFAKYGTVSQCDRVKNFAFVHMVGRENADNAIKALDDSLFMGT 113
Query: 158 TLEVSLAK 165
++V AK
Sbjct: 114 HIQVQHAK 121
>gi|112983834|ref|NP_001037293.1| RNA-binding protein lark [Bombyx mori]
gi|57236850|gb|AAW48898.1| lark-PA [Bombyx mori]
Length = 343
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
+++ NL+ TE L+ FE+YG V +++Y FVH E+ Q A+ LNG+ V G
Sbjct: 9 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQ 68
Query: 158 TLEVSLAK 165
+++ AK
Sbjct: 69 AIKIEAAK 76
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK 129
L G I ++ A ++ P T T ++V NLT +++E F+++G V ++
Sbjct: 64 LVHGQAIKIEAAKSRKAPSTPTTK----IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 119
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+Y FVH + + A+ ELNG V G ++V L+
Sbjct: 120 NYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 154
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 16/101 (15%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++NL ++EKLKE F YG + K ++D FV F +EA A+ E+N
Sbjct: 319 LYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMN 378
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ AG L V+LA ++KEE R R Q Q R
Sbjct: 379 GKMFAGKPLYVALA------QRKEE---RRARLQAQFSQMR 410
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHF 136
Q+ + + +K +YV+NL++ T+E+L F +YG + ++D + FV+F
Sbjct: 202 QDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNF 261
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
E+ +A A+ LNG+ V A+ K ++E+ L+ R
Sbjct: 262 ENPDDAAKAVEGLNGKKFDDKEWYVGKAQ---KKSEREQELKGR 302
>gi|355568958|gb|EHH25239.1| hypothetical protein EGK_09022 [Macaca mulatta]
Length = 222
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
P+ + + E + K LYV+NL + TE+ L+E FE YGR+ K + D + FV
Sbjct: 190 PRRDREQEKATHFKNLYVKNLGEEFTEQHLREMFEPYGRITSHKLMLDDEGRSRRFGFVA 249
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
+E+ Q A+ A+ L+G+ + G + +A+ S ++++EI R E R Q
Sbjct: 250 YENPQSALAAVIGLHGKQL-GDNKFLYVARALSKAERQQEINRKLEERKRQ 299
>gi|349802575|gb|AEQ16760.1| putative rna binding motif protein 4b [Pipa carvalhoi]
Length = 100
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151
L+V NL+ CT E+L+ FE+YG V +KDYAFVH E EA+ A+ L+
Sbjct: 31 LHVSNLSSECTSEELRAKFEEYGSVLECDIVKDYAFVHMEKSDEALEAIRNLDN 84
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 84 QEEPDTETMSKVK--VLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFV 134
E+ E M K + LYV+NL + +E LK+ FE +G + K R K + FV
Sbjct: 121 HEQHKVERMQKYQGVNLYVKNLDESVDDEALKKQFESFGNITSAKVMTDENGRSKGFGFV 180
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
FE +EA TA+ E+N + V L V+LA+ D++
Sbjct: 181 CFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRR 217
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 69 LLSRGCDIIVDWADPQEEPD---TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
+L G + V P+ + + ET K +YV+N + +E L++ F +YG +
Sbjct: 1 MLLAGKKVFVGKFQPRAQRNRELGETAKKYTNVYVKNFGDHYNKESLEKLFAKYGTITSC 60
Query: 126 K------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRN 179
+ K + FV F + +EA A+ LN V GS L++ + + ++ E+ +
Sbjct: 61 DVMTSDGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKK 120
Query: 180 RERRMMQMMQ 189
E+ ++ MQ
Sbjct: 121 HEQHKVERMQ 130
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 20/114 (17%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY-------AFVHFEDRQEAITAMNELN 150
LY++NL +E L+E F+++G + + ++D AFV F +EA A+ ELN
Sbjct: 326 LYIKNLEDGADDETLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELN 385
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRM-MQMMQGRGGPGPSGAHAPL 203
G+ V L V+LA+ R +RRM +Q + GP G AP+
Sbjct: 386 GKMVGAKPLYVALAQ------------RKEDRRMRLQAQFAQRSMGPGGVMAPM 427
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV +L TE +L E F G V ++ +D YA+V+F Q+A A++ L
Sbjct: 45 LYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAIDVL 104
Query: 150 NGQTVAGSTLEV 161
N Q V G + +
Sbjct: 105 NFQVVNGKPIRI 116
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 91 TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAI 143
T +K ++V+NL T+E+L++ FE +G V V KD + FV +E ++A
Sbjct: 215 TETKFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDAS 274
Query: 144 TAMNELNGQ 152
A+ EL+G+
Sbjct: 275 KAVEELDGK 283
>gi|90076648|dbj|BAE88004.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|440714448|ref|ZP_20895027.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
gi|436440644|gb|ELP33948.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
Length = 196
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAM 146
V +YV NL+ TEE+L+ AFEQYG V V I D +AFV D + A A+
Sbjct: 54 VTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAI 113
Query: 147 NELNGQTVAGSTLEVSLAKP 166
LNG + G ++ V+ A+P
Sbjct: 114 ENLNGHEIDGRSVTVNEARP 133
>gi|421614043|ref|ZP_16055112.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
gi|408495250|gb|EKJ99839.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
Length = 189
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAM 146
V +YV NL+ TEE+L+ AFEQYG V V I D +AFV D + A A+
Sbjct: 54 VTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAI 113
Query: 147 NELNGQTVAGSTLEVSLAKP 166
LNG + G ++ V+ A+P
Sbjct: 114 ENLNGHEIDGRSVTVNEARP 133
>gi|417304381|ref|ZP_12091404.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|449136828|ref|ZP_21772190.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
gi|327539333|gb|EGF25954.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|448884533|gb|EMB15023.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
Length = 195
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAM 146
V +YV NL+ TEE+L+ AFEQYG V V I D +AFV D + A A+
Sbjct: 54 VTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAI 113
Query: 147 NELNGQTVAGSTLEVSLAKP 166
LNG + G ++ V+ A+P
Sbjct: 114 ENLNGHEIDGRSVTVNEARP 133
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 271 LYVKNLDDSINDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 330
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+ V L V+LA+ K++++ IL N+ + + ++ GGP
Sbjct: 331 RIVGTKPLYVALAQ---RKEERKAILTNQYMQRLSTVRALGGP 370
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E L++ F Q+G++ VK ++D + FV+FE +EA A+ +N
Sbjct: 168 IYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMN 227
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V+G L V A +K+ E +RR QM Q R
Sbjct: 228 GKEVSGRLLYVGRA------QKRLERQNELKRRFEQMKQDR 262
>gi|2815290|emb|CAA05719.1| P23 protein [Chironomus tentans]
gi|3954793|emb|CAA06034.1| hnRNP protein [Chironomus tentans]
Length = 191
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD---YAFVHFEDRQEAITAMNELNGQTV 154
+YV NLT +E+L+E F ++G++ V + +AF+ F ++ EAI+A + LNGQ +
Sbjct: 9 VYVGNLTDKVKKEQLEEEFTRFGKLNSVWLAHNPPGFAFIEFANKDEAISACDSLNGQEL 68
Query: 155 AGSTLEVSLAK 165
GS L V ++K
Sbjct: 69 LGSKLRVEISK 79
>gi|77627748|ref|NP_001029290.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|60414777|sp|Q5R1W5.3|SRSF2_PANTR RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|56342346|dbj|BAD74033.1| arginine/serine-rich 2 splicing factor [Pan troglodytes verus]
Length = 221
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+N+ +E+L++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 298 LYVKNIDDNIDDERLRKEFTPFGTITSAKVMLEDGRSKGFGFVCFSSAEEATKAVTEMNG 357
Query: 152 QTVAGSTLEVSLAKPPSDKK---KKEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGPP 208
+ V L V+LA+ D+K + + + RM Q+ Q P G P + PP
Sbjct: 358 RIVGSKPLYVALAQRKEDRKAHLASQYMQKMANIRMQQIGQPVFQPSSGGYFVPTIPQPP 417
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVK---VLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
+L G + V P++E + E K K +YV+N + +++ L+E FE+YGR+
Sbjct: 162 MLLNGKRVFVGKFIPRKEREKELGEKAKRFTNVYVKNFGEDFSDDLLREMFEKYGRITSH 221
Query: 126 K-------RIKDYAFVHFEDRQEAITAMNELNG-QTVAGSTLEVSLAKPPSDKKKKEEIL 177
K + K + FV FED + A A+ LNG + V G L V A+ ++ +++E+
Sbjct: 222 KVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQKKAE--RQQELK 279
Query: 178 RNRERRMMQMM 188
R E+ M+ +
Sbjct: 280 RKFEQLKMERL 290
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G I + W+ Q +P S V ++++NL + + + + F +G + K +D
Sbjct: 78 KGKPIRIMWS--QRDPSLRK-SGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDE 134
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRM 184
Y FVHFE + A +++++NG + G + V P +K++E+ L + +R
Sbjct: 135 SGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIP---RKEREKELGEKAKRF 191
>gi|62898065|dbj|BAD96972.1| splicing factor, arginine/serine-rich 2 variant [Homo sapiens]
Length = 221
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 18/111 (16%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150
LY++NL +EKLKE F +YG V K + + + FV + + +EA+ A++E+N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGLSRGFGFVAYSNPEEALRALSEMN 393
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP-SGAH 200
G+ + L ++LA+ D++ + L ++ R PGP SG H
Sbjct: 394 GKMIGKKPLYIALAQRKEDRRAHLQALFSQIR----------APGPMSGFH 434
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 10/90 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL + E++L++ F ++G + ++D + FV+FE + A +A+ ++N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
G ++ L V A+ K ++EE LR +
Sbjct: 291 GISLGDDVLYVGRAQ---KKSEREEELRRK 317
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 11/135 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F YG + K + D + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAP--LLTGPPM 209
+ VA L V+LA+ +++++ IL N+ + + ++ P H +T P
Sbjct: 356 RIVATKPLYVALAQ---RREERKAILTNKYMQRLATLRTMASPLIDSYHQSGYYVTLPQP 412
Query: 210 PRGSVPLQAALSSTR 224
P S +A+SS R
Sbjct: 413 PMRSFYNHSAVSSVR 427
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 12/102 (11%)
Query: 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAM 146
K +Y++N + T+EKLKE F +GR V+ +KD + FV++ ++A A+
Sbjct: 189 KFTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAV 248
Query: 147 NELNGQTVAGSTLEVSLAKPPSD-----KKKKEEILRNRERR 183
NE+NG+ + G L V A+ + K+K ++I ++R +R
Sbjct: 249 NEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQR 290
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LY++NL + EE+L+ AF +G + RVK R K + + F +EA AM E+NG
Sbjct: 295 LYIKNLDETIDEEQLRRAFSSFGSMSRVKVMEEEGRSKGFGLICFSCPEEATKAMAEMNG 354
Query: 152 QTVAGSTLEVSLAKPP 167
Q + + ++LA+ P
Sbjct: 355 QVLGSKAINIALAQRP 370
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVK---VLYVRNLTQYCTEEKLKEAFEQYGRVERVK 126
L + C + V ++E + E +K +Y++N +E+LKE F QYG++ VK
Sbjct: 161 LLKNCRLFVGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVK 220
Query: 127 RIKD-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ D + FV F+ + A A+ +NG+ + G + V A+ ++++
Sbjct: 221 VMTDSSGKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQ 272
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAM 146
S + ++++NL + + L E F +G++ K + D YAFVHF+ + A A+
Sbjct: 95 SGIGNVFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSDDKGSRGYAFVHFQSQSAADRAI 154
Query: 147 NELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
E+NG + L V P ++K++E L+N+
Sbjct: 155 EEMNGALLKNCRLFVG---PFKNRKEREAELQNK 185
>gi|50546647|ref|XP_500793.1| YALI0B12276p [Yarrowia lipolytica]
gi|74689812|sp|Q6CEW9.1|MRD1_YARLI RecName: Full=Multiple RNA-binding domain-containing protein 1
gi|49646659|emb|CAG83044.1| YALI0B12276p [Yarrowia lipolytica CLIB122]
Length = 828
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAF 133
+P E+P ++ K L++RNL EE ++ F QYG +E V + K +A
Sbjct: 287 EPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAH 346
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEE 175
V FED + AI A +G+ G L + KP D + +E
Sbjct: 347 VQFEDPENAIAAYEAQDGKIFQGRLLHILPGKPKKDYNRLDE 388
>gi|348544446|ref|XP_003459692.1| PREDICTED: hypothetical protein LOC100710640 [Oreochromis
niloticus]
Length = 227
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFLD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGALLDGRELRVQMAR 91
>gi|158299891|ref|XP_319902.4| AGAP009142-PA [Anopheles gambiae str. PEST]
gi|157013736|gb|EAA43387.4| AGAP009142-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD---YAFVHFEDRQEAITAMNEL 149
SK +YV NLT +E L+ F +YG++ V + +AF+ FE+++EA TA + L
Sbjct: 7 SKGTRVYVGNLTDKVKKEDLEGEFTKYGKLNSVWVAFNPPGFAFIEFENKEEAETACDNL 66
Query: 150 NGQTVAGSTLEVSLAK 165
NGQ + GS L V ++K
Sbjct: 67 NGQDILGSKLRVEISK 82
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 18/111 (16%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150
LY++NL +EKLKE F +YG V K + + + FV + + +EA+ A++E+N
Sbjct: 53 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 112
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP-SGAH 200
G+ + L ++LA+ D++ + L ++ R PGP SG H
Sbjct: 113 GKMIGRKPLYIALAQRKEDRRAHLQALFSQIR----------APGPMSGFH 153
>gi|32476441|ref|NP_869435.1| RNA-binding protein [Rhodopirellula baltica SH 1]
gi|32446986|emb|CAD78892.1| RNA-binding protein [Rhodopirellula baltica SH 1]
Length = 206
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAM 146
V +YV NL+ TEE+L+ AFEQYG V V I D +AFV D + A A+
Sbjct: 65 VTNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAI 124
Query: 147 NELNGQTVAGSTLEVSLAKP 166
LNG + G ++ V+ A+P
Sbjct: 125 ENLNGHEIDGRSVTVNEARP 144
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
L+++NL +E+LK F +G + K + D + FV + +EA A+ E+N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEI---LRNRERRMMQMMQGRGGPGPS-GAHAPLLTG 206
+ +AG L V+LA+ ++ + E RN+ R Q+ G P GA PL+ G
Sbjct: 426 QRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYG 485
Query: 207 PPMPRGSVPLQAALSSTRMGRG 228
P G P+ AA++ GRG
Sbjct: 486 P----GGYPIPAAVN----GRG 499
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
Query: 90 ETMSKVKVL-------YVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
E SKV+ L Y++NL TE++ + F Q+G + + +KD + FV+
Sbjct: 248 ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 307
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRM 184
+ + + A A++ELN + G L V A+ K ++EE LR R +M
Sbjct: 308 YANHECAQKAVDELNDKEYKGKKLYVGRAQ---KKHEREEELRKRYEQM 353
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGR-------VER 124
R C I+ W+ Q +P M V +++NL + L + F +G+ V+
Sbjct: 149 RPCRIM--WS--QRDPSLRKMGTGNV-FIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE 203
Query: 125 VKRIKDYAFVHFEDRQEAITAMNELNG 151
+ K Y FVHF+ + A A+ +NG
Sbjct: 204 LGNAKGYGFVHFDSVESANAAIEHVNG 230
>gi|426346598|ref|XP_004040963.1| PREDICTED: serine/arginine-rich splicing factor 2 [Gorilla gorilla
gorilla]
Length = 206
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|405974565|gb|EKC39200.1| RNA-binding protein 4 [Crassostrea gigas]
Length = 226
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
LY+ NL + C + L++ FE YG+V +++Y F+HFE+ EA A L+G G
Sbjct: 9 LYIGNLPETCRKADLQKMFEAYGKVIECDIVRNYCFIHFENPNEAKMAQANLDGVDFEGV 68
Query: 158 TLEVSLA 164
L+V ++
Sbjct: 69 KLKVEMS 75
>gi|332260181|ref|XP_003279164.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 2 [Nomascus leucogenys]
Length = 221
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|6755478|ref|NP_035488.1| serine/arginine-rich splicing factor 2 [Mus musculus]
gi|47271443|ref|NP_003007.2| serine/arginine-rich splicing factor 2 [Homo sapiens]
gi|57528425|ref|NP_001009720.1| serine/arginine-rich splicing factor 2 [Rattus norvegicus]
gi|77735589|ref|NP_001029490.1| serine/arginine-rich splicing factor 2 [Bos taurus]
gi|299758481|ref|NP_001177668.1| splicing factor, arginine/serine-rich 2 [Macaca mulatta]
gi|306482646|ref|NP_001182356.1| serine/arginine-rich splicing factor 2 [Homo sapiens]
gi|126308709|ref|XP_001371367.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Monodelphis
domestica]
gi|296203283|ref|XP_002748811.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 1
[Callithrix jacchus]
gi|395825870|ref|XP_003786143.1| PREDICTED: serine/arginine-rich splicing factor 2 [Otolemur
garnettii]
gi|397494981|ref|XP_003818344.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 1 [Pan
paniscus]
gi|397494983|ref|XP_003818345.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 2 [Pan
paniscus]
gi|402901195|ref|XP_003913541.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 1 [Papio
anubis]
gi|402901197|ref|XP_003913542.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 2 [Papio
anubis]
gi|402901199|ref|XP_003913543.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 3 [Papio
anubis]
gi|402901201|ref|XP_003913544.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 4 [Papio
anubis]
gi|18280933|sp|Q62093.4|SRSF2_MOUSE RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Protein PR264; AltName: Full=Putative myelin
regulatory factor 1; Short=MRF-1; AltName: Full=Splicing
component, 35 kDa; AltName: Full=Splicing factor SC35;
Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|52783335|sp|Q6PDU1.3|SRSF2_RAT RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|60416437|sp|Q01130.4|SRSF2_HUMAN RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Protein PR264; AltName: Full=Splicing component, 35
kDa; AltName: Full=Splicing factor SC35; Short=SC-35;
AltName: Full=Splicing factor, arginine/serine-rich 2
gi|110287957|sp|Q3MHR5.3|SRSF2_BOVIN RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|539663|pir||A42701 splicing factor SFRS2 - human
gi|35597|emb|CAA44307.1| PR 264 [Homo sapiens]
gi|455419|emb|CAA53383.1| PR264/SC35 [Homo sapiens]
gi|3335676|gb|AAC71000.1| splicing factor SC35 [Mus musculus]
gi|12653143|gb|AAH00339.1| SFRS2 protein [Homo sapiens]
gi|12654915|gb|AAH01303.1| SFRS2 protein [Homo sapiens]
gi|13529557|gb|AAH05493.1| Sfrs2 protein [Mus musculus]
gi|26351947|dbj|BAC39610.1| unnamed protein product [Mus musculus]
gi|26352962|dbj|BAC40111.1| unnamed protein product [Mus musculus]
gi|30583339|gb|AAP35914.1| splicing factor, arginine/serine-rich 2 [Homo sapiens]
gi|34849641|gb|AAH58508.1| Splicing factor, arginine/serine-rich 2 [Rattus norvegicus]
gi|47123339|gb|AAH70086.1| Splicing factor, arginine/serine-rich 2 [Homo sapiens]
gi|61359244|gb|AAX41688.1| splicing factor arginine/serine-rich 2 [synthetic construct]
gi|67969334|dbj|BAE01019.1| unnamed protein product [Macaca fascicularis]
gi|74227066|dbj|BAE38330.1| unnamed protein product [Mus musculus]
gi|75775273|gb|AAI05139.1| Splicing factor, arginine/serine-rich 2 [Bos taurus]
gi|90076288|dbj|BAE87824.1| unnamed protein product [Macaca fascicularis]
gi|119609845|gb|EAW89439.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|119609846|gb|EAW89440.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|119609851|gb|EAW89445.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|119609853|gb|EAW89447.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|123980614|gb|ABM82136.1| splicing factor, arginine/serine-rich 2 [synthetic construct]
gi|123995435|gb|ABM85319.1| splicing factor, arginine/serine-rich 2 [synthetic construct]
gi|148702655|gb|EDL34602.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_b [Mus
musculus]
gi|148702656|gb|EDL34603.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_b [Mus
musculus]
gi|149054884|gb|EDM06701.1| similar to splicing factor, arginine/serine-rich 2, isoform CRA_a
[Rattus norvegicus]
gi|149054885|gb|EDM06702.1| similar to splicing factor, arginine/serine-rich 2, isoform CRA_a
[Rattus norvegicus]
gi|149054887|gb|EDM06704.1| similar to splicing factor, arginine/serine-rich 2, isoform CRA_a
[Rattus norvegicus]
gi|168277776|dbj|BAG10866.1| splicing factor, arginine/serine-rich 2 [synthetic construct]
gi|193784944|dbj|BAG54097.1| unnamed protein product [Homo sapiens]
gi|296476083|tpg|DAA18198.1| TPA: splicing factor, arginine/serine-rich 2 [Bos taurus]
gi|380782971|gb|AFE63361.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|380815556|gb|AFE79652.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|384941848|gb|AFI34529.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|384948766|gb|AFI37988.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|410226692|gb|JAA10565.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410226694|gb|JAA10566.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410262826|gb|JAA19379.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410262828|gb|JAA19380.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410299756|gb|JAA28478.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410299760|gb|JAA28480.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410299766|gb|JAA28483.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410338225|gb|JAA38059.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410338227|gb|JAA38060.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410338229|gb|JAA38061.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410338231|gb|JAA38062.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410338233|gb|JAA38063.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|228504|prf||1805195B RNA-binding protein PR264
Length = 221
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|198422099|ref|XP_002129220.1| PREDICTED: similar to RNA binding motif protein 39 [Ciona
intestinalis]
Length = 465
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 28/149 (18%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV +L + TEE +K F +GRVE+V+ IKD Y F+ F + + A A+++LN
Sbjct: 203 LYVGSLHENITEEMIKGIFSPFGRVEQVQIIKDDAGASRGYGFITFAEAECAKRALDQLN 262
Query: 151 GQTVAGSTLEVS-------------LAKPPS----DKKKKEEI---LRNRERRMMQMMQG 190
G +AG ++++ LA PS D ++ I R + M ++ +G
Sbjct: 263 GFEIAGKPIKLNTVSYGTDMNAMQGLASGPSFLDNDAVERAGIDLGTTGRLQLMAKLAEG 322
Query: 191 RGGPGPSGAHAPLLTGPPMPRGSVPLQAA 219
G PS A L G M G +P AA
Sbjct: 323 TGLEVPSAAQQALYLGQSMGLG-LPQSAA 350
>gi|116175283|ref|NP_001070697.1| serine/arginine-rich splicing factor 2 [Sus scrofa]
gi|122131841|sp|Q06A98.1|SRSF2_PIG RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|115371755|gb|ABI96202.1| SFRS2 [Sus scrofa]
Length = 221
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|359320233|ref|XP_003639286.1| PREDICTED: serine/arginine-rich splicing factor 2-like isoform 1
[Canis lupus familiaris]
gi|359320235|ref|XP_003639287.1| PREDICTED: serine/arginine-rich splicing factor 2-like isoform 2
[Canis lupus familiaris]
Length = 221
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|378776211|ref|YP_005184641.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|364507018|gb|AEW50542.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 112
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 14/97 (14%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 143
M K K +YV NL TEE L F QYG++E + IKD + F+ F +QEA
Sbjct: 21 MMKQKKIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEAE 80
Query: 144 TAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
+A+ E+NGQ G +L+V +A +KK + R+R
Sbjct: 81 SAL-EMNGQPFDGRSLKVCMA-----QKKTNSVSRSR 111
>gi|209736008|gb|ACI68873.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
Length = 222
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + ++FV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFSFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 22/123 (17%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++NL T+++L+E F +G++ K ++D FV F R+EA A+ E+N
Sbjct: 406 LYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMN 465
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM---QMMQGRGGPGPSGAHAPLLTGP 207
G+ ++G L V+ A+ R ER+ M Q Q R P L P
Sbjct: 466 GKMISGKPLYVAFAQ------------RKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYP 513
Query: 208 PMP 210
PMP
Sbjct: 514 PMP 516
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHF 136
QE ++ +K ++V+NL++ T+E L + F +YG + + + + FV+F
Sbjct: 289 QERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNF 348
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
E +A A+ ELNG+ + V A +KK E + +RR Q M+
Sbjct: 349 ESPDDAARAVEELNGKKINDKEWYVGRA------QKKSEREMDLKRRFEQSMK 395
>gi|428210291|ref|YP_007094644.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428012212|gb|AFY90775.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 101
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
+YV NL+ T E L AF QYG V+RV+ R++ +AFV + E TA++ L
Sbjct: 3 IYVGNLSYEVTPEDLSAAFAQYGSVKRVQLPTDRETGRVRGFAFVEMDTDAEETTAIDAL 62
Query: 150 NGQTVAGSTLEVSLAKPPSDK 170
+G G ++V+ AKP D+
Sbjct: 63 DGAEWMGRNMKVNKAKPREDR 83
>gi|403280479|ref|XP_003931745.1| PREDICTED: uncharacterized protein LOC101052045 [Saimiri
boliviensis boliviensis]
Length = 209
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
L+++NL +E+LK F +G + K + D + FV + +EA A+ E+N
Sbjct: 352 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 411
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEI---LRNRERRMMQMMQGRGGPGPS-GAHAPLLTG 206
+ +AG L V+LA+ ++ + E RN+ R Q+ G P GA PL+ G
Sbjct: 412 QRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYG 471
Query: 207 PPMPRGSVPLQAALSSTRMGRG 228
P G P+ AA++ GRG
Sbjct: 472 P----GGYPIPAAVN----GRG 485
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 17/109 (15%)
Query: 90 ETMSKVKVL-------YVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
E SKV+ L Y++NL TE++ + F Q+G + + +KD + FV+
Sbjct: 234 ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 293
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRM 184
+ + + A A++ELN + G L V A+ K ++EE LR +M
Sbjct: 294 YANHECAQKAVDELNDKEYKGKKLYVGRAQ---KKHEREEELRKAYEQM 339
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGR-------VER 124
R C I+ W+ Q +P M V +++NL + L + F +G+ V+
Sbjct: 135 RPCRIM--WS--QRDPSLRKMGTGNV-FIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE 189
Query: 125 VKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+ K Y FVHF+ + A A+ +NG + + V +++ K E L+
Sbjct: 190 LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALK 243
>gi|392412892|ref|YP_006449499.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390626028|gb|AFM27235.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 109
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+YV NL+ +E++LKE FE +G+VE I D + FV +R+E + A+ EL
Sbjct: 6 IYVGNLSFQTSEDQLKELFESFGQVESATIISDKTTGRPRGFGFVKMPEREEGLKAIQEL 65
Query: 150 NGQTVAGSTLEVSLAKPPSDK 170
+ + G L+V+ A+P +D+
Sbjct: 66 DARDFMGRNLKVNEARPKTDR 86
>gi|183222158|ref|YP_001840154.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
gi|189912218|ref|YP_001963773.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167776894|gb|ABZ95195.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167780580|gb|ABZ98878.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
Length = 87
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+YV NL+ TE KL E F +G V K I D + F+ +DR EA A+++L
Sbjct: 5 IYVGNLSYEMTETKLNELFSVHGAVSSAKIITDQYTGGSKGFGFIEMKDRNEADKAISDL 64
Query: 150 NGQTVAGSTLEVSLAKPPSDK 170
NG+ + ++V++AKP ++
Sbjct: 65 NGKNILNREMKVNIAKPKTNN 85
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------------RIKDYAFVHFEDRQEAI 143
LYV+NL +E+L++ F +G + K R K + FV F +EA
Sbjct: 298 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEAT 357
Query: 144 TAMNELNGQTVAGSTLEVSLAKPPSDKKK---KEEILRNRERRMMQMMQGRGGPGPSGAH 200
A+ E+NG+ V L V+LA+ D+K + + R RM QM PGPS
Sbjct: 358 KAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQRMANMRMHQMGHQFMPPGPSSYF 417
Query: 201 APLL 204
P +
Sbjct: 418 VPTI 421
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVL---YVRNLTQYCTEEKLKEAFEQYGRVERV 125
+L G + V P++E + E K K+ YV+N + +EE+L+ FE++G++
Sbjct: 162 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLSEEQLRNMFEKFGKITSY 221
Query: 126 K-------RIKDYAFVHFEDRQEAITAMNELNG-QTVAGSTLEVSLAKPPSDKKKK 173
K + K + FV FE + A TA++ LNG + V G L V A+ ++++++
Sbjct: 222 KVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQE 277
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK 129
L RG I + W+ Q +P S V ++++NL + + + + F +G + K +
Sbjct: 76 LIRGRPIRIMWS--QRDPSLRK-SGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 130 D-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
D Y FVHFE + A ++ ++NG + G + V P +++K+
Sbjct: 133 DENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 183
>gi|298492825|ref|YP_003723002.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298234743|gb|ADI65879.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 101
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
+YV NL+ TE+ LK+AF +YG+V RV+ R++ +AFV E + A+ L
Sbjct: 3 IYVGNLSYQVTEDDLKQAFAEYGKVSRVQLPTDRETGRLRGFAFVEMETEDQETAAIEAL 62
Query: 150 NGQTVAGSTLEVSLAKP 166
+G G L+V+ AKP
Sbjct: 63 DGAEWMGRDLKVNKAKP 79
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
LYV+NL +E+LKEAF YG + K R K + FV F ++A A+ E+N
Sbjct: 286 LYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMN 345
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
V L V+LA+ D++ K ++ ++R+ Q
Sbjct: 346 ATLVGSKPLYVALAQRKEDRRAK--LIAEHQQRLAQ 379
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------ 126
G I + W+ Q +P K + +++NL + +++L + F G++ K
Sbjct: 69 GRPIRIMWS--QRDPSLRKSGKGNI-FIKNLDKTIDQKQLYDTFSFIGKILSCKIAMDEH 125
Query: 127 -RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
K Y FVHFE + A A+ ++NG + + V P SD+K LR
Sbjct: 126 GNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKSASGKLR 178
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHFEDRQEAITAMNELN 150
+YV+N T+EKL++ F ++G ++ + K + FV F D A A+ ++
Sbjct: 182 IYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMH 241
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
G+ + G L S A+ K++++E L+ R
Sbjct: 242 GKEINGRALYASRAQ---RKEERQEELKQR 268
>gi|148702654|gb|EDL34601.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_a [Mus
musculus]
Length = 241
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|410906769|ref|XP_003966864.1| PREDICTED: RNA-binding protein 4.1-like [Takifugu rubripes]
Length = 379
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
+++ NLT T ++L+E FE+YG+V +K+Y FVH + EA A+ LN + G
Sbjct: 4 IFIGNLTCTATPQELRELFEKYGKVTECDIVKNYGFVHMSNVSEAEEAIKNLNQHQLHGW 63
Query: 158 TLEVSLAK 165
+ V L+K
Sbjct: 64 RMNVELSK 71
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL + T + L+ F+++G V +KDYAFVH E ++A+ A+ +++ G
Sbjct: 80 LHVSNLGEGVTSDVLRARFQEFGPVVECDIVKDYAFVHMERMEDAMEAIEKMDNTAFKGK 139
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 140 LMSVQLS 146
>gi|296218879|ref|XP_002755663.1| PREDICTED: RNA-binding protein 4B [Callithrix jacchus]
Length = 372
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTL 159
YAFVH E ++A+ A+ L+ G L
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGELL 141
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|221219380|gb|ACM08351.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
gi|223647188|gb|ACN10352.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
gi|223673061|gb|ACN12712.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
Length = 212
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + ++FV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFSFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|223647184|gb|ACN10350.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
gi|223673057|gb|ACN12710.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
Length = 212
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + ++FV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFSFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 18/111 (16%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150
LY++NL +EKLKE F +YG V K + + + FV + + +EA+ A++E+N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP-SGAH 200
G+ + L ++LA+ D++ + L ++ R PGP SG H
Sbjct: 394 GKMIGRKPLYIALAQRKEDRRAHLQALFSQIR----------APGPMSGFH 434
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 10/90 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL + E++L++ F ++G + ++D + FV+FE + A +A+ ++N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
G ++ L V A+ K ++EE LR +
Sbjct: 291 GISLGDDVLYVGRAQ---KKSEREEELRRK 317
>gi|443318092|ref|ZP_21047374.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
6406]
gi|442782317|gb|ELR92375.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
6406]
Length = 108
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
+YV NL+ TEE L E F++YG V+RV+ R++ +AFV + E A+ +L
Sbjct: 3 VYVGNLSYNATEEDLTEVFKEYGAVKRVQVPVDRETGRMRGFAFVEMSEDAEENAAIEDL 62
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
+G G TL+V+ A+P +++K
Sbjct: 63 DGAEWMGRTLKVNKARPRTERK 84
>gi|327289700|ref|XP_003229562.1| PREDICTED: RNA-binding protein 4B-like [Anolis carolinensis]
Length = 354
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYGRV IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGRVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 CINVEASKNKSKASTKLHV 82
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y ++LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGRVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G I V+ + + + T+ L+V N++ CT +L+ FE+YG V +KD
Sbjct: 60 LHGVCINVEASKNKSKASTK-------LHVGNISTGCTNLELRFKFEEYGPVLECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLS 146
>gi|209155586|gb|ACI34025.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
gi|209732124|gb|ACI66931.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
Length = 211
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
++A AM+ ++G + G L V +A+
Sbjct: 65 NRDAEDAMDAMDGALLDGRELRVQMAR 91
>gi|195347400|ref|XP_002040241.1| GM19036 [Drosophila sechellia]
gi|195564435|ref|XP_002105824.1| GD16475 [Drosophila simulans]
gi|194121669|gb|EDW43712.1| GM19036 [Drosophila sechellia]
gi|194203185|gb|EDX16761.1| GD16475 [Drosophila simulans]
Length = 466
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDR 139
TET + + V Y L Q TE++++ F G +E VK I+D Y FV++
Sbjct: 140 STETRTNLIVNY---LPQTMTEDEIRSLFSSVGEIESVKLIRDKSQGQSLGYGFVNYVRP 196
Query: 140 QEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
Q+A A+N LNG + T++VS A+P SD K +
Sbjct: 197 QDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANL 233
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ NL E L + F +G V+ VK +KD Y FV + EA A+ L
Sbjct: 387 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 446
Query: 150 NGQTVAGSTLEVSL 163
NG T+ L+VS
Sbjct: 447 NGYTMGNRVLQVSF 460
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 289 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 348
Query: 152 QTVAGSTLEVSLAKPPSDKKK---KEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGPP 208
+ V L V+LA+ D+K + + R RM QM Q PG +G + + T PP
Sbjct: 349 RIVGTKPLYVALAQRKEDRKAHLTSQYMQRMASMRMQQMGQ-IFQPGSAGGYF-VPTIPP 406
Query: 209 MPRGSVPLQ 217
R P Q
Sbjct: 407 AQRFYGPAQ 415
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVL---YVRNLTQYCTEEKLKEAFEQYGRVERV 125
+L G + V P++E + E K K+ YV+N + ++E L++ FE+YGR+
Sbjct: 153 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLRDMFEKYGRITSH 212
Query: 126 KRI-------KDYAFVHFEDRQEAITAMNELNG-QTVAGSTLEVSLAKPPSDKKKK 173
K + + + FV FED A A ELNG + V G L V A+ ++++K+
Sbjct: 213 KVMYKEDGSSRGFGFVAFEDPDAAERACLELNGKELVEGKPLYVGRAQKKAERQKE 268
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G I + W+ Q +P S V ++++NL + + + + F +G + K +D
Sbjct: 69 KGRPIRIMWS--QRDPSLRK-SGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQDE 125
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
Y FVHFE + A ++ ++NG + G + V P +++K+
Sbjct: 126 NGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 174
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL +E+L+EAF YG + + ++D + FV F +EA TA+ E+N
Sbjct: 363 LYVKNLDDLLQDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMN 422
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGPPM 209
G+ + G + V+ A+ + ++ ++ +R ++ RG P P + G PM
Sbjct: 423 GKLITGKPVYVAFAQ--RKEVRRAQLEAQHAQRATGVLVNRGMP----MGQPPMYGAPM 475
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 69 LLSRGCDIIV-DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR 127
+L G ++ V + QE PD E + YV+NL T+ L+ FE +G+V
Sbjct: 227 MLIAGTEVFVGHFQKRQERPDIEDWTNC---YVKNLPTQWTDADLRREFEPFGQVNSAVV 283
Query: 128 IKD--------YAFVHFEDRQEAITAMNELNGQT---VAGSTLEVSLAKPPSDKKKKEEI 176
+KD + FV++ED A A+ L+G+T V G LE+ + K +++ E+
Sbjct: 284 MKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRTEREREL 343
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--- 130
C I+ W+ Q +P S V ++V+NL + L + F +G + K D
Sbjct: 147 CRIM--WS--QRDPSLRK-SGVGNIFVKNLDPSIDNKALYDTFSLFGNILSCKVANDPTG 201
Query: 131 ----YAFVHFEDRQEAITAMNELNGQTVAGSTLEV 161
Y +VH+E + A A+N++NG +AG+ + V
Sbjct: 202 QSKGYGYVHYETAEAATEAINKINGMLIAGTEVFV 236
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFE 137
Q + D T +V LYV+NL +E+L++AF +G + K R K + FV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP 196
+EA A+ E+NG+ VA L V+LA ++K+E M +M R P P
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALA-----QRKEERQAHLTNEYMQRMASVRAVPNP 395
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+Y++N + +E+LK+ F ++G VK + D + FV FE ++A A++E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ + G + V A +KK E +R+ QM Q R
Sbjct: 253 GKELNGKHIYVGRA------QKKVERQTELKRKFEQMKQDR 287
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFE 137
Q + D T +V LYV+NL +E+L++AF +G + K R K + FV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP 196
+EA A+ E+NG+ VA L V+LA+ K++++ L N M +M R P P
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQ---RKEERQAHLTN--EYMQRMASVRAVPNP 395
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+Y++N + +E+LK+ F ++G VK + D + FV FE ++A A++E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ + G + V A +KK E +R+ QM Q R
Sbjct: 253 GKELNGKQIYVGRA------QKKVERQTELKRKFEQMKQDR 287
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 18/111 (16%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150
LY++NL +EKLKE F +YG V K + + + FV + + +EA+ A++E+N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP-SGAH 200
G+ + L ++LA+ D++ + L ++ R PGP SG H
Sbjct: 394 GKMIGRKPLYIALAQRKEDRRAHLQALFSQIR----------APGPMSGFH 434
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 10/90 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL + E++L++ F ++G + ++D + FV+FE + A +A+ ++N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
G ++ L V A+ K ++EE LR +
Sbjct: 291 GISLGDDVLYVGRAQ---KKSEREEELRRK 317
>gi|322797564|gb|EFZ19608.1| hypothetical protein SINV_13630 [Solenopsis invicta]
Length = 324
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 15 IFVNVRKFTMAESSREAEEKPSSERTPDYTKLLE------YG---LDKRIAGKLDDIFKT 65
IF+ +A+ + A+ KP E+ Y K++E YG ++ AG+ + I
Sbjct: 12 IFIG----NLADKTSNADIKPLFEK---YGKVVECDVVKNYGFVHMENEEAGR-NAIQNL 63
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
H++ G I + A ++ P+T T ++V NLT +++E F +YG V
Sbjct: 64 NGHMV-HGQPIKCEAAKSRKGPNTPTTK----IFVGNLTDNTKAPQVRELFAKYGTVVEC 118
Query: 126 KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+++Y FVH E + A+ ELNGQ V G ++V ++
Sbjct: 119 DIVRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQIS 157
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
+++ NL + +K FE+YG+V +K+Y FVH E+ + A+ LNG V G
Sbjct: 12 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHMVHGQ 71
Query: 158 TLEVSLAK 165
++ AK
Sbjct: 72 PIKCEAAK 79
>gi|52840506|ref|YP_094305.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52627617|gb|AAU26358.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 92
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 14/97 (14%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 143
M K K +YV NL TEE L F QYG++E + IKD + F+ F +QEA
Sbjct: 1 MMKQKKIYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEAE 60
Query: 144 TAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
+A+ E+NGQ G +L+V +A +KK + R+R
Sbjct: 61 SAL-EMNGQPFDGRSLKVCMA-----QKKTNSVSRSR 91
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 281 LYVKNLDDVIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 340
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+ V+ L V+LA+ K++++ IL N+ + + +++ GP
Sbjct: 341 RIVSTKPLYVALAQ---RKEERKAILTNQYMQRISVLRNINGP 380
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+N + ++ L+E F ++G+ VK + D + FV+FE +EA A+N +N
Sbjct: 178 IYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQKAVNSMN 237
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ + G L V A +K+ E +RR QM Q R
Sbjct: 238 GKALGGRVLYVGRA------QKRTERQGELKRRFEQMKQER 272
>gi|307195687|gb|EFN77529.1| RNA-binding protein lark [Harpegnathos saltator]
Length = 325
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 15 IFVNVRKFTMAESSREAEEKPSSERTPDYTKLLE------YG---LDKRIAGKLDDIFKT 65
IF+ +A+ + A+ KP E+ Y K++E YG ++ AG+ + I
Sbjct: 12 IFIG----NLADKTSNADIKPLFEK---YGKVVECDVVKNYGFVHMENEEAGR-NAIQNL 63
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
H++ G I + A ++ P+T T ++V NLT +++E F +YG V
Sbjct: 64 NGHMV-HGQPIKCEAAKSRKGPNTPTTK----IFVGNLTDNTKAPQVRELFAKYGTVVEC 118
Query: 126 KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+++Y FVH E + A+ ELNGQ V G ++V ++
Sbjct: 119 DIVRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQIS 157
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
+++ NL + +K FE+YG+V +K+Y FVH E+ + A+ LNG V G
Sbjct: 12 IFIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAIQNLNGHMVHGQ 71
Query: 158 TLEVSLAK 165
++ AK
Sbjct: 72 PIKCEAAK 79
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFE 137
Q + D T +V LYV+NL +E+L++AF +G + K R K + FV F
Sbjct: 250 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 309
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP 196
+EA A+ E+NG+ VA L V+LA+ K++++ L N M +M R P P
Sbjct: 310 SPEEATKAVTEMNGRIVATKPLYVALAQ---RKEERQAHLTN--EYMQRMASVRAVPNP 363
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+Y++N + +E+LK+ F ++G VK + D + FV FE ++A A++E+N
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 220
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ + G + V A +KK E +R+ QM Q R
Sbjct: 221 GKELNGKHIYVGRA------QKKVERQTELKRKFEQMKQDR 255
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY-------AFVHFEDRQEAITAMNELN 150
LY++NL + +EKL+E F +YG + K ++D FV F+ ++A A+ E+N
Sbjct: 319 LYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMN 378
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK 173
G+ V L V+LA+ D+K K
Sbjct: 379 GKMVGSKPLYVALAQRKEDRKAK 401
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHF 136
Q+ + + K +YV+NL+ T+++LKE F +YG + ++D + FV+F
Sbjct: 202 QDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNF 261
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK--KEEILRN 179
E+ A A+ ELNG+ L V A+ S+++ KE+ +N
Sbjct: 262 ENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEKN 306
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
+YV NL TE+ L+E FEQ+G V K R K +AFV + +E A+ +L
Sbjct: 3 IYVGNLPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIEKL 62
Query: 150 NGQTVAGSTLEVSLAKP--PSDKKKK 173
NG + G T+ V+ AKP P D K +
Sbjct: 63 NGHELDGRTIVVNKAKPRAPRDSKPR 88
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL +EKLKE F YG + K ++D FV F +EA A+ E+N
Sbjct: 318 LYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMN 377
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK 173
G+ VA L V+LA+ D++ +
Sbjct: 378 GKMVASKPLYVTLAQRKEDRRAR 400
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHF 136
QE T +K ++V+NL++ T+++LK+ F ++G + ++D + FV+F
Sbjct: 201 QERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNF 260
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
E +A A+ LNG+ + V A+ S+++ + +I
Sbjct: 261 ESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKI 300
>gi|296085076|emb|CBI28491.3| unnamed protein product [Vitis vinifera]
Length = 1054
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKDYAFVHFEDRQEAITAMNELNGQTVA 155
L+V NL+ +E L + F Q+G ++ V + + YAF++F+ ++AI AM L G +VA
Sbjct: 427 LWVGNLSHSISENTLTDPFLQFGELDTVAFQPGRSYAFINFKQEEDAIHAMRSLQGFSVA 486
Query: 156 GSTLEVSLAKP--PSDKKKKEEILRNRERRMMQMMQGRGGP 194
G L++ AK S + E+ L+ R+ + + RG P
Sbjct: 487 GMPLKIEFAKAEKSSTASRDEDYLQRRDEQRSTI---RGSP 524
>gi|41946787|gb|AAH65971.1| Zgc:55876 protein [Danio rerio]
Length = 220
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD + M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVDGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAILDGRELRVQMAR 91
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYVRN TEE L E F++YG + + + D + FV FE+ +A A+ E+N
Sbjct: 314 LYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMN 373
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAPL 203
G+ + G L V++A+ + ++ +LR + ++ +Q M R P +H L
Sbjct: 374 GRMLNGKPLIVNIAQ---RRDQRFMMLRLQFQQRLQAMMRRMHSMPFVSHGHL 423
>gi|307187784|gb|EFN72750.1| RNA-binding protein lark [Camponotus floridanus]
Length = 331
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 15 IFVNVRKFTMAESSREAEEKPSSERTPDYTKLLE------YG---LDKRIAGKLDDIFKT 65
IF+ +A+ + A+ KP E+ Y K++E YG ++ AG+ + I
Sbjct: 12 IFIG----NLADKTSNADIKPLFEK---YGKVVECDVVKNYGFVHMENEEAGR-NAIQNL 63
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
H++ G I + A ++ P+T T ++V NLT +++E F +YG V
Sbjct: 64 NGHMV-HGQPIKCEAAKSRKGPNTPTTK----IFVGNLTDNTKAPQVRELFAKYGTVVEC 118
Query: 126 KRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+++Y FVH E + A+ ELNGQ V G ++V ++
Sbjct: 119 DIVRNYGFVHLEATGDVNDAIKELNGQIVDGQPMKVQIS 157
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAM 146
P ++ K+ ++ NL + +K FE+YG+V +K+Y FVH E+ + A+
Sbjct: 2 PGFSSVGTFKI-FIGNLADKTSNADIKPLFEKYGKVVECDVVKNYGFVHMENEEAGRNAI 60
Query: 147 NELNGQTVAGSTLEVSLAK 165
LNG V G ++ AK
Sbjct: 61 QNLNGHMVHGQPIKCEAAK 79
>gi|354568213|ref|ZP_08987379.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353541178|gb|EHC10648.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 103
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
P ET +YV NL+ TEE LK F +YG+V+RV R++ +AFV +
Sbjct: 3 PPIETYVIQMTIYVGNLSYSATEEDLKAVFAEYGQVKRVVLPTDRDTGRLRGFAFVEMNE 62
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
+ A+ EL+G G L+V+ A+P D ++
Sbjct: 63 DTQEEAAITELDGAEWMGRQLKVNKARPREDNRR 96
>gi|225447446|ref|XP_002266343.1| PREDICTED: uncharacterized protein LOC100249524 [Vitis vinifera]
Length = 953
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKDYAFVHFEDRQEAITAMNELNGQTVA 155
L+V NL+ +E L + F Q+G ++ V + + YAF++F+ ++AI AM L G +VA
Sbjct: 56 LWVGNLSHSISENTLTDPFLQFGELDTVAFQPGRSYAFINFKQEEDAIHAMRSLQGFSVA 115
Query: 156 GSTLEVSLAKP--PSDKKKKEEILRNRERRMMQMMQGRGGP 194
G L++ AK S + E+ L+ R+ + + RG P
Sbjct: 116 GMPLKIEFAKAEKSSTASRDEDYLQRRDEQRSTI---RGSP 153
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQ 140
+ E S LYV+NL +++L+ FE +G + K ++D + FV +
Sbjct: 322 ENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPD 381
Query: 141 EAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR--ERRMMQMMQGRGGPGPSG 198
EA A++E+NG+ + L V+LA+ K + + L ++ +R +M G G PG G
Sbjct: 382 EATKAVSEMNGKMIGTKPLYVALAQ---RKDVRRQALESQIAQRAQQRMQYGAGFPGMQG 438
Query: 199 AHA-PLLTGPPMPRGSVPL 216
P+ PPMP P+
Sbjct: 439 YMGQPMYGYPPMPGYGQPM 457
>gi|149478364|ref|XP_001514814.1| PREDICTED: serine/arginine-rich splicing factor 2-like, partial
[Ornithorhynchus anatinus]
Length = 120
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|1405747|emb|CAA67134.1| PR264/SC35 [Mus musculus]
Length = 121
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|410929633|ref|XP_003978204.1| PREDICTED: uncharacterized protein LOC101070858 [Takifugu rubripes]
Length = 229
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFLD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGALLDGRELRVQMAR 91
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
L+V+NL EKL+E F+ +G + K + K + FV F +EA A+ E+N
Sbjct: 213 LFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGKSKGFGFVCFSSPEEATKAITEMN 272
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK-EEILRNRERRMMQMMQGRGGPGPSGAHAPLLTG--- 206
+ + G L V+LA+ ++ + E+ ++ R + MQ GG P P+ G
Sbjct: 273 QRMILGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAASGGI-PGQFIPPMFYGQQG 331
Query: 207 --PPMPRGSVPLQAALSSTRMGRG 228
PP RG+ P M RG
Sbjct: 332 FFPPNGRGNAPFPGPNPQMMMRRG 355
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+N+ ++E+ ++ F +G + + KD + FV++E + A+ A+ ELN
Sbjct: 110 IYVKNIDLEFSDEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELN 169
Query: 151 GQTVAGSTLEVSLAK 165
+ + G + V A+
Sbjct: 170 DKEINGQKIYVGRAQ 184
>gi|308274216|emb|CBX30815.1| Putative RNA-binding protein rbpA [uncultured Desulfobacterium sp.]
Length = 94
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+Y+ NL+ TEE LK F ++G VE VK IKD + F+ EA A+ L
Sbjct: 3 IYIGNLSIATTEETLKTLFVEFGNVETVKVIKDNFTGKPKGFGFIEMPSNSEADQAIKAL 62
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
NG+ + G+ ++V+ A P +K K+ R
Sbjct: 63 NGKRIDGNNIKVNPADPGGKQKPKKPFKR 91
>gi|213403304|ref|XP_002172424.1| multiple RNA-binding domain-containing protein [Schizosaccharomyces
japonicus yFS275]
gi|212000471|gb|EEB06131.1| multiple RNA-binding domain-containing protein [Schizosaccharomyces
japonicus yFS275]
Length = 804
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KRI---KDYAFVH 135
+EE E +S+ K L++RNLT C E+ + E F+ YG +E+V K+ K +A+V
Sbjct: 275 EEEKAIEQISESKRLFLRNLTYSCQEDDIVELFQDYGALEQVHVPVDKKTNAPKGFAYVE 334
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
F+++ +AI A +L+G G L + AK ++ + E+
Sbjct: 335 FKNKDDAIRAYQDLDGLAFQGRLLHILPAKSRTNIMQDEQAFH 377
>gi|432949878|ref|XP_004084303.1| PREDICTED: uncharacterized protein LOC100049528 [Oryzias latipes]
Length = 239
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYSKESRGFAFVRFFD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGALLDGRELRVQMAR 91
>gi|21751099|dbj|BAC03903.1| unnamed protein product [Homo sapiens]
Length = 201
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|41054475|ref|NP_955945.1| serine/arginine-rich splicing factor 2b [Danio rerio]
gi|28278933|gb|AAH45480.1| Zgc:55876 [Danio rerio]
Length = 218
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD + M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVDGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAILDGRELRVQMAR 91
>gi|452822290|gb|EME29311.1| splicing factor, arginine/serine-rich 7 [Galdieria sulphuraria]
Length = 258
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV 154
+ LYV N++++ T L++ F +YGRV V+ + DYAFV D ++A A L+G+ +
Sbjct: 3 TRKLYVGNVSRHATRRDLEDLFSKYGRVRDVRLLSDYAFVEMGDERDAEDARYYLDGKRL 62
Query: 155 AGSTLEVSLAK 165
G + V AK
Sbjct: 63 EGERIRVEFAK 73
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP---SGAHAPLLTGPP 208
+ V+ L V+LA+ K++++ IL N+ + + M R PGP S P PP
Sbjct: 356 RIVSTKPLYVALAQ---RKEERKAILTNQYMQRLATM--RALPGPFLGSFQPPPGYFLPP 410
Query: 209 MPR 211
+P+
Sbjct: 411 IPQ 413
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
+Y++N + +L+E F ++G+ VK R K + FV+FE +EA A+ ++N
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ + G + V A +K+ E +R+ QM Q R
Sbjct: 253 GKEINGRMVYVGRA------QKRLERQSELKRKFEQMKQER 287
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP---SGAHAPLLTGPP 208
+ V+ L V+LA+ K++++ IL N+ + + M R PGP S P PP
Sbjct: 356 RIVSTKPLYVALAQ---RKEERKAILTNQYMQRLATM--RALPGPFLGSFQPPPGYFLPP 410
Query: 209 MPR 211
+P+
Sbjct: 411 IPQ 413
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
+Y++N + +L+E F ++G+ VK R K + FV+FE +EA A+ ++N
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ + G + V A +K+ E +R+ QM Q R
Sbjct: 253 GKEINGRMVYVGRA------QKRLERQSELKRKFEQMKQER 287
>gi|326926668|ref|XP_003209520.1| PREDICTED: RNA-binding protein 4B-like [Meleagris gallopavo]
Length = 154
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 CINVEASKNKSKASTK 79
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 20/146 (13%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHHK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G I V+ + + + T+ L+V N++ CT +L+ FE+YG V +KD
Sbjct: 60 LHGVCINVEASKNKSKASTK-------LHVGNISPTCTNLELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAG 156
YAFVH E ++A+ A+ L+ G
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQG 138
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEA 142
+E +T +YV N+ TE+++++AF YGR+ R+ +++ YAFV FE++ A
Sbjct: 226 DEVYNQTSGDNTSVYVGNIAN-LTEDEIRQAFASYGRISEVRIFKMQGYAFVKFENKNAA 284
Query: 143 ITAMNELNGQTVAGSTLEVSLAK 165
A+ E+N Q V G + S K
Sbjct: 285 AKAITEMNNQDVGGQMVRCSWGK 307
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 78 VDWA-DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------ 130
V+WA +P ++P ++ ++V +L+ +KL+EAF +G V K I+D
Sbjct: 112 VNWAVEPGQQPSKIDTTRHFHVFVGDLSSEVDNQKLREAFIPFGDVSDAKVIRDTNTTKS 171
Query: 131 --YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA-KPPSDKKK 172
Y FV + R+EA A+ ++NGQ + T+ + A + P D++K
Sbjct: 172 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 216
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-----YAFVHFEDRQEAITAMNELN 150
+ LYV NL +E+ + F Q G V + K I D YAFV F D +A A+ +N
Sbjct: 42 RTLYVGNLDPSVSEDFIATLFNQIGSVTKTKVIHDGANDPYAFVEFSDHGQASQALQTMN 101
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRN 179
+ + ++V+ A P + K + R+
Sbjct: 102 KRLLHDREMKVNWAVEPGQQPSKIDTTRH 130
>gi|397517075|ref|XP_003828745.1| PREDICTED: RNA-binding protein 4 isoform 4 [Pan paniscus]
gi|18088917|gb|AAH21120.1| RBM4 protein [Homo sapiens]
gi|50949475|emb|CAH10593.1| hypothetical protein [Homo sapiens]
Length = 177
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 28/158 (17%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
YAFVH E ++A+ A+ L+ G +PPS
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQG--------EPPS 142
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
>gi|62739311|gb|AAH94189.1| Elavl2-a protein [Xenopus laevis]
Length = 359
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--- 130
C ++ + P E +TE SK L V L Q T+E+LK F G +E K ++D
Sbjct: 17 CPNTINCSSPVESNNTED-SKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 74
Query: 131 -----YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
Y FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 75 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 117
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV L + T+++L++ F QYGR+ + + D F+ F+ R EA A+ L
Sbjct: 125 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 184
Query: 150 NGQTVAGST--LEVSLAKPPSDK 170
NGQ G+T + V A PS K
Sbjct: 185 NGQKPPGATEPITVKFANNPSQK 207
>gi|156838686|ref|XP_001643044.1| hypothetical protein Kpol_1069p8 [Vanderwaltozyma polyspora DSM
70294]
gi|156113633|gb|EDO15186.1| hypothetical protein Kpol_1069p8 [Vanderwaltozyma polyspora DSM
70294]
Length = 449
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 12/113 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKV--KVLYVRNL-TQYCTEEKLKEAFEQYGRVERVKRIK 129
G ++ ++P E+ D + + + +Y+ NL + TE+KL E F ++G +ER+K +K
Sbjct: 177 GFKVVAKLSNPLEKSDRSDAALLEHREIYITNLDSDQITEQKLSEWFSKFGDIERIKLVK 236
Query: 130 D--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKE 174
+ YAF+ F A A+ EL+ +T+ G+T+ V+LA S +++E
Sbjct: 237 NENEPGNTSYAFISFTSSDSATKAL-ELHKETLEGNTITVTLANKKSYLERQE 288
>gi|397494985|ref|XP_003818346.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 3 [Pan
paniscus]
gi|119609854|gb|EAW89448.1| splicing factor, arginine/serine-rich 2, isoform CRA_g [Homo
sapiens]
gi|194387574|dbj|BAG60151.1| unnamed protein product [Homo sapiens]
Length = 209
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|317419577|emb|CBN81614.1| Splicing factor, arginine/serine-rich 2 [Dicentrarchus labrax]
Length = 228
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFLD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGALLDGRELRVQMAR 91
>gi|159164093|pdb|2DGT|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Rna- Binding Protein 30
Length = 92
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V N++ CT ++L+ FE+YG V +KDYAFVH E ++A+ A+ L+ G
Sbjct: 13 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGK 72
Query: 158 TLEVSLA 164
+ V L+
Sbjct: 73 RMHVQLS 79
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFE 137
Q + D T +V LYV+NL +E+L++AF +G + K R K + FV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP 196
+EA A+ E+NG+ VA L V+LA+ K+ ++ L N M +M R P P
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQ---RKEDRQAHLTN--EYMQRMASVRAVPNP 395
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 76 IIVDWADPQEEPDTETMSKVK---VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-- 130
+ V ++E + E +KVK +Y++N + +E+LK+ F ++G VK + D
Sbjct: 168 VFVGRFKSRKEREAELGAKVKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 227
Query: 131 -----YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
+ FV FE ++A A++E+NG+ + G + V A +KK E +R+
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA------QKKVERQTELKRKFE 281
Query: 186 QMMQGR 191
QM Q R
Sbjct: 282 QMKQDR 287
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIK 129
G I VDWA+P + + + +V LY+ NL + E+LK + + +V +I
Sbjct: 197 GKPIFVDWAEPLPVVNPQILKQVTKLYLSNLPMTLSSEELKSFLCELLDPSHIIKVHKIN 256
Query: 130 DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
++AFVHF R+ A A +L G + + V A+P
Sbjct: 257 NFAFVHFTLRKYAEEAFRKLTGLVMMDKLIGVEWARP 293
>gi|26345390|dbj|BAC36346.1| unnamed protein product [Mus musculus]
Length = 254
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITA 145
+K LY++NL TEE L+E F ++G++ + KD + FV+FE ++A A
Sbjct: 188 AKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRA 247
Query: 146 MNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR--ERRMMQMMQGRG 192
+ LNG + L V+ A+ K ++E++LR + E+R Q+++ RG
Sbjct: 248 LEALNGLQLGSKVLYVARAQ---KKAEREQLLRRQFEEKRNEQILKYRG 293
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 68 HLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR 127
H + G I V W+ +PD S + ++V+NL+ +L+ F+++G + K
Sbjct: 75 HTMLHGKVIRVMWS--HRDPDARR-SGIGNVFVKNLSDSIDNVRLQAMFQKFGNILSCKV 131
Query: 128 I-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTL 159
+ K Y FV FE + A A+ +LNG + G +
Sbjct: 132 VVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQI 170
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+N+ ++ L+E F G++ K ++D + FV F EA A+N +
Sbjct: 296 VYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFH 355
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP---SGAHAPL-LTG 206
G L V++A+ D++ + ++ Q M G GP G + PL T
Sbjct: 356 GYMFHRKPLYVAIAQRKEDRQAQLQL------HYAQRMAGLAGPSTPVIPGGYPPLYYTA 409
Query: 207 PPMPRGSVPLQAALSSTRMG 226
PP G +P + L +G
Sbjct: 410 PP---GVIPPRQGLMYQPLG 426
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFE 137
Q + D T +V LYV+NL +E+L++AF +G + K R + + FV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSRGFGFVCFS 341
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG-RGGPGP 196
+EA A+ E+NG VA L VSLA K++++ L N MQ M G R P P
Sbjct: 342 SPEEATKAVTEMNGIIVATKPLYVSLAH---RKEERQAYLTN---EYMQRMAGVRAVPNP 395
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+Y++N + +E+LK+ F ++G VK + D + FV FE ++A A++E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ ++G + V A +KK E +R+ QM Q R
Sbjct: 253 GKELSGKQIYVGRA------QKKVERQTELKRKFEQMKQDR 287
>gi|194911931|ref|XP_001982402.1| GG12756 [Drosophila erecta]
gi|190648078|gb|EDV45371.1| GG12756 [Drosophila erecta]
Length = 466
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L V L Q TE++++ F G +E VK I+D Y FV++ Q+A A+N L
Sbjct: 147 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQGQSLGYGFVNYVRPQDAEQAVNVL 206
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEI 176
NG + T++VS A+P SD K +
Sbjct: 207 NGLRLQNKTIKVSFARPSSDAIKGANL 233
Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ NL E L + F +G V+ VK +KD Y FV + EA A+ L
Sbjct: 387 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 446
Query: 150 NGQTVAGSTLEVSL 163
NG T+ L+VS
Sbjct: 447 NGYTMGNRVLQVSF 460
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++NL +++L+E F +G++ K ++D FV F R+EA A+ E+N
Sbjct: 324 LYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMN 383
Query: 151 GQTVAGSTLEVSLAKPPSDKK 171
G+ ++G L V+ A+ D+K
Sbjct: 384 GKMISGKPLYVAFAQRKEDRK 404
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-------KRIKDYAFVHF 136
QE + +K ++V+NL++ T+E L + F +YG + + + + F++F
Sbjct: 207 QERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINF 266
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD-----KKKKEEILRN 179
E+ A A+ ELNG+ + V A+ S+ K++ E+IL++
Sbjct: 267 ENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQILKD 314
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 288 LYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRSKGFGFVCFSAAEEATKAVTEMNG 347
Query: 152 QTVAGSTLEVSLAKPPSDKK---KKEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGP 207
+ V L V+LA+ D+K + + R RM M Q G G + P L P
Sbjct: 348 RIVGSKPLYVALAQRKEDRKAHLASQYMQRMANMRMQHMGQIFQPGGNGGYYVPTLPQP 406
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 12/114 (10%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVL---YVRNLTQYCTEEKLKEAFEQYGRV--E 123
+L G + V P++E + E K K+ YV+N +E LKE FE+YG +
Sbjct: 153 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGDELNDETLKEMFEKYGTITSH 212
Query: 124 RVKRIKD-----YAFVHFEDRQEAITAMNELNGQTVA-GSTLEVSLAKPPSDKK 171
RV IKD + FV FE+ + A A+ ELNG+ + G L V A+ ++++
Sbjct: 213 RVM-IKDGKSRGFGFVAFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQ 265
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK 129
L +G I + W+ Q +P S V ++++NL + + + + F +G + K +
Sbjct: 67 LIKGRPIRIMWS--QRDPSLRK-SGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQ 123
Query: 130 D-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
D Y FVHFE + A T++ ++NG + G + V P +++K+
Sbjct: 124 DEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKE 174
>gi|386816934|ref|ZP_10104152.1| RNP-1 like RNA-binding protein [Thiothrix nivea DSM 5205]
gi|386421510|gb|EIJ35345.1| RNP-1 like RNA-binding protein [Thiothrix nivea DSM 5205]
Length = 127
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+YV NL TE +L++ F YG V V IKD + FV + EA A+N L
Sbjct: 3 IYVGNLPYKITENELRDLFGAYGEVSSVSMIKDKMTGQSKGFGFVDMPNAGEATAAINGL 62
Query: 150 NGQTVAGSTLEVSLAKPPSDK 170
N Q V G ++V+ AKP D+
Sbjct: 63 NEQAVQGRNIKVNEAKPREDR 83
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E+ L+E F Q+G+ VK ++D + FV+FE +EA A+ ++N
Sbjct: 193 VYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ V G L V A+ ++++ + L+ + ++M QM Q R
Sbjct: 253 GKEVRGQLLYVGRAQKWAERQNE---LKRKFQQMKQMKQDR 290
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 22/119 (18%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL E+L++ F YG + K + K + FV F +EA A+ E+NG
Sbjct: 299 LYVKNLDDSIDNERLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 358
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR-------GGPGPSGAHAPL 203
+ L V+LA+ K +++ IL N Q MQ R GGP P+
Sbjct: 359 CILGTKPLYVALAQ---RKDERKAILTN------QFMQQRLSNVWALGGPHLGSFQQPV 408
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G I + W+ Q +P S V ++++NL + + L + F +G + K + D
Sbjct: 78 KGQPIRIMWS--QRDPGLRK-SGVGNIFIKNLEESIDNKALYDTFSTFGNILSCKVVCDD 134
Query: 131 -----YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
+ FVHFE R+ A A++ +NG + + VS K
Sbjct: 135 HGSRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFK 174
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQ 140
+ E S LY++NL +++L+ FE +G + K ++D + FV +
Sbjct: 324 ENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPD 383
Query: 141 EAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR--ERRMMQMMQGRGGPGPSG 198
EA A++E+NG+ + L V+LA+ K + + L ++ +R +M G G PG G
Sbjct: 384 EATKAVSEMNGKMIGTKPLYVALAQ---RKDVRRQALESQIAQRAQQRMQYGAGFPGMQG 440
Query: 199 AHA-PLLTGPPMPRGSVPL 216
P+ PPMP P+
Sbjct: 441 YMGQPMYGYPPMPGYGQPM 459
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
LYV+NL ++ LK+ FE YG++ K R K + FV FE EA A+ E+N
Sbjct: 306 LYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMN 365
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAP 202
G+ + L V+LA+ D+K ++ +R+ + G P + P
Sbjct: 366 GKMMCTKPLYVALAQRKEDRKA--QLASQYMQRLASIRMHNAGSMPGTVYTP 415
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
++++NL + + + + F +G + K D Y FVHFE + A A+ ++N
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVN 167
Query: 151 GQTVAGSTLEVSLAKP 166
G + G + V +P
Sbjct: 168 GMLLEGKKVYVGKFQP 183
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEA 142
ET + +Y++N +E L++ F ++G++ + K + FV FE+ ++A
Sbjct: 193 ETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDA 252
Query: 143 ITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
A+ E++ + G+ ++ + + ++ E+ R E++ ++ MQ
Sbjct: 253 EKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQ 299
>gi|402587661|gb|EJW81596.1| nucleolysin TIAR [Wuchereria bancrofti]
Length = 440
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQTVA 155
+YV N+ +E L+ AF+++GR+ V+ K YAFV F+ + A A+ ++NGQ +
Sbjct: 292 VYVGNVNSNANDEDLRAAFDKFGRILEVRIFKSQGYAFVRFDKKDSACNAICKMNGQELC 351
Query: 156 GSTLEVSLAKPP 167
G ++ S + P
Sbjct: 352 GQNIKCSWGRTP 363
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 78 VDWA-DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------ 130
V+WA +P + +T SK ++V +L+ + LK+AF +G V K I+D
Sbjct: 163 VNWATEPGSQAKVDT-SKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKS 221
Query: 131 --YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
Y FV + R+EA A+ ++NGQ + T+ + A
Sbjct: 222 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 257
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-----YAFVHFEDRQEAITAMNELN 150
+ +YV NL TE+ + F Q G V + K I D YAFV F D A A+ +N
Sbjct: 93 RTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDPYAFVEFADHYTAAQALQAMN 152
Query: 151 GQTVAGSTLEVSLAKPPSDKKK 172
+ + ++V+ A P + K
Sbjct: 153 KRVLLEKEMKVNWATEPGSQAK 174
>gi|170592088|ref|XP_001900801.1| RNA recognition motif. [Brugia malayi]
gi|158591668|gb|EDP30272.1| RNA recognition motif [Brugia malayi]
Length = 421
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQTVA 155
+YV N+ +E L+ AF+++GR+ V+ K YAFV F+ + A A+ ++NGQ +
Sbjct: 273 VYVGNVNSSANDEDLRAAFDKFGRILEVRIFKSQGYAFVRFDKKDSACNAICKMNGQELC 332
Query: 156 GSTLEVSLAKPP 167
G ++ S + P
Sbjct: 333 GQNIKCSWGRTP 344
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 78 VDWA-DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------ 130
V+WA +P + +T SK ++V +L+ + LK+AF +G V K I+D
Sbjct: 144 VNWATEPGSQAKVDT-SKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKS 202
Query: 131 --YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
Y FV + R+EA A+ ++NGQ + T+ + A
Sbjct: 203 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 238
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-----YAFVHFEDRQEAITAMNELN 150
+ +YV NL TE+ + F Q G V + K I D YAFV F D A A+ +N
Sbjct: 74 RTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDPYAFVEFADHYTAAQALQAMN 133
Query: 151 GQTVAGSTLEVSLAKPPSDKKK 172
+ + ++V+ A P + K
Sbjct: 134 KRVLLEKEMKVNWATEPGSQAK 155
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LY++NL + +EKL+ F +G + RVK R K + + F +EA AM E+NG
Sbjct: 295 LYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLICFSSAEEATKAMTEMNG 354
Query: 152 QTVAGSTLEVSLAKPP 167
+ + L ++LA+ P
Sbjct: 355 RILGSKPLNIALAQKP 370
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVK---VLYVRNLTQYCTEEKLKEAFEQYGRVERVK 126
L + C + V +++ + E +K +Y++N +E+L E F +YG+ VK
Sbjct: 161 LLKDCRLFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVK 220
Query: 127 RIKD-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ D + FV F+ + A A+ E+NG+ + G L V A+ ++++
Sbjct: 221 VMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQ 272
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAM 146
S + ++++NL + + L E F +G++ K + D YAFVHF+++ A A+
Sbjct: 95 SGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHGSRGYAFVHFQNQIAADRAI 154
Query: 147 NELNGQTVAGSTLEVSLAKPPSDK 170
E+NG + L V K D+
Sbjct: 155 EEMNGALLKDCRLFVGRFKSRKDR 178
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQ 140
+ E S LY++NL +++L+ FE +G + K ++D + FV +
Sbjct: 324 ENEAKSAGVNLYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPD 383
Query: 141 EAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR--ERRMMQMMQGRGGPGPSG 198
EA A++E+NG+ + L V+LA+ K + + L ++ +R +M G G PG G
Sbjct: 384 EATKAVSEMNGKMIGTKPLYVALAQ---RKDVRRQALESQIAQRAQQRMQYGTGFPGMQG 440
Query: 199 AHA-PLLTGPPMPRGSVPL 216
P+ PPMP P+
Sbjct: 441 YMGQPMYGYPPMPGYGQPM 459
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL E+K++ F +G + VK ++D + F+ F +EA A+ E+N
Sbjct: 330 LYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMN 389
Query: 151 GQTVAG--STLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAP-LLTGP 207
GQT+ G L V+LA+ D++ + ++R M GR G P + GP
Sbjct: 390 GQTIQGFPKPLYVALAQRAEDRRAQLAAHFAQQR---GNMGGRMAGGVIAGMPPQYMAGP 446
Query: 208 PMPRGSVP 215
M VP
Sbjct: 447 QMFYAGVP 454
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 11/99 (11%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQE 141
E ++K ++V+NL + T+ L + F ++G++ V + K + FV +E ++
Sbjct: 218 EGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVED 277
Query: 142 AITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
A A+N LNG +AG TL V+ A+ K ++E L+ R
Sbjct: 278 AQAAVNALNGTELAGKTLFVARAQ---KKAEREAELKQR 313
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 65 TGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER 124
T + L RG + W+ Q +P S + ++++NL + + L + F +G +
Sbjct: 105 TLNYSLIRGKPCRIMWS--QRDPAVRK-SGLGNVFIKNLDKTIDNKALLDTFSAFGNILS 161
Query: 125 VKRIKD------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
K + D Y FVH+E ++ A TA+ ++NG + G + V + P
Sbjct: 162 CKVVTDENGSKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVP 209
>gi|359482021|ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|297740158|emb|CBI30340.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
L+V L+ Y TE+ L E F QYG+V K R K + FV F +EA A E+
Sbjct: 36 LFVGGLSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKARTEM 95
Query: 150 NGQTVAGSTLEVSLAKPPSD 169
+G+ + G T+ V AKP +D
Sbjct: 96 DGKELNGRTIFVDYAKPRAD 115
>gi|213625406|gb|AAI70539.1| Xel-1 protein [Xenopus laevis]
Length = 388
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--- 130
C ++ + P E +TE SK L V L Q T+E+LK F G +E K ++D
Sbjct: 46 CPNTINCSSPVESNNTED-SKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 103
Query: 131 -----YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
Y FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 104 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 146
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV L + T+++L++ F QYGR+ + + D F+ F+ R EA A+ L
Sbjct: 154 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 213
Query: 150 NGQTVAGST--LEVSLAKPPSDK 170
NGQ G+T + V A PS K
Sbjct: 214 NGQKPPGATEPITVKFANNPSQK 236
>gi|154341607|ref|XP_001566755.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064080|emb|CAM40272.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 614
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQT 153
VL+V NL Y T EKL E FE +G + V R+ + AF+H+E ++ A+ + G+
Sbjct: 157 NVLWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNMAFLHYETVEQCTMAIETMKGRP 216
Query: 154 VAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGPPMPRGS 213
+ G L ++ D + ++ G G GP+G+ + P+
Sbjct: 217 IEGVMLSLNYGH---DAQHANDVAGG---------SGTGAEGPAGSGGHNYSNVPLTADG 264
Query: 214 VPLQ 217
+P+
Sbjct: 265 IPVN 268
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 298 LYVKNLDDTIDDERLRKEFSPFGTITSAKVMMEDNRSKGFGFVCFSSPEEATKAVTEMNG 357
Query: 152 QTVAGSTLEVSLAKPPSDKKK---KEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTGP 207
+ V L V+LA+ D+K + + R RM QM Q SG P + P
Sbjct: 358 RIVGSKPLYVALAQRKEDRKAHLTSQYMQRMANIRMHQMGQFIQPGTSSGYFVPTIPAP 416
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVL---YVRNLTQYCTEEKLKEAFEQYGRVERV 125
+L G + V P++E + E K K+ YV+N + TEE+L+ FE+YG++
Sbjct: 162 MLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDLTEEQLRTMFEKYGKITSY 221
Query: 126 K-------RIKDYAFVHFEDRQEAITAMNELNG-QTVAGSTLEVSLAKPPSDKKKK 173
K + K + FV FE + A TA+ LNG + + G L V A+ ++++++
Sbjct: 222 KIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQE 277
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK 129
L +G I + W+ Q +P S V ++++NL + + + + F +G + K +
Sbjct: 76 LIKGRPIRIMWS--QRDPSLRK-SGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQ 132
Query: 130 D-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
D Y FVHFE + A ++ ++NG + G + V P +++K+
Sbjct: 133 DENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 183
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIK 129
V +A+P +E D E M++VK +++ L Y EE++K F+ YG +ERV +
Sbjct: 404 VAFAEPIKEADAEVMAQVKSVFINGLPPYWDEERVKNRFKAYGLIERVVLARNMSSAKRN 463
Query: 130 DYAFVHFEDRQEAITAMNELN 150
D+ FV+F +EA+ + N
Sbjct: 464 DFGFVNFSTHEEALACIEATN 484
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
LYV+NL ++ LK+ FE YG++ K R K + FV FE EA A+ E+N
Sbjct: 306 LYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMN 365
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTG 206
G+ + L V+LA+ D+K ++ +R+ + G P + P G
Sbjct: 366 GKMMCTKPLYVALAQRKEDRKA--QLASQYMQRLASIRMHNAGSMPGTVYTPGTGG 419
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
++++NL + + + + F +G + K D Y FVHFE + A A+ ++N
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVN 167
Query: 151 GQTVAGSTLEVSLAKP 166
G + G + V +P
Sbjct: 168 GMLLEGKKVYVGKFQP 183
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEA 142
ET + +Y++N +E L++ F ++G++ + K + FV FE+ ++A
Sbjct: 193 ETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDA 252
Query: 143 ITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQ 189
A+ E++ + G+ ++ + + ++ E+ R E++ ++ MQ
Sbjct: 253 EKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQ 299
>gi|242089655|ref|XP_002440660.1| hypothetical protein SORBIDRAFT_09g004726 [Sorghum bicolor]
gi|241945945|gb|EES19090.1| hypothetical protein SORBIDRAFT_09g004726 [Sorghum bicolor]
Length = 94
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-RIKDYAFVHFE 137
D DP + + LYV N+++Y E L+ AF +YGR+ V + ++Y FV F
Sbjct: 8 DHCDPYDH--SGQHGSTTKLYVGNMSRYTRERDLEAAFGRYGRLVTVYLQGRNYGFVVFY 65
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAK 165
D ++A A N L+GQ + GS + V A+
Sbjct: 66 DPKDADAARNGLDGQEICGSHITVQFAR 93
>gi|194384258|dbj|BAG64902.1| unnamed protein product [Homo sapiens]
Length = 173
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A AM L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAMRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 26/171 (15%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAMRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAKPPSDK------KKKEEILRNRERR 183
++A+ A+ L+ G V+ +K K IL +R+ R
Sbjct: 121 AEDAVEAIRGLDNTEFQGKITPVTEGYCCCNKGHTYIFKNCNLILESRKSR 171
>gi|312086091|ref|XP_003144941.1| hypothetical protein LOAG_09365 [Loa loa]
Length = 394
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQTVA 155
+YV N+ +E L+ AF+++GR+ V+ K YAFV F+ + A A+ ++NGQ +
Sbjct: 246 VYVGNVNSSANDEDLRAAFDKFGRILEVRIFKSQGYAFVRFDKKDSACNAICKMNGQELC 305
Query: 156 GSTLEVSLAKPP 167
G ++ S + P
Sbjct: 306 GQNIKCSWGRTP 317
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 78 VDWA-DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------ 130
V+WA +P + +T SK ++V +L+ + LK+AF +G V K I+D
Sbjct: 117 VNWATEPGSQAKVDT-SKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKS 175
Query: 131 --YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
Y FV + R+EA A+ ++NGQ + T+ + A
Sbjct: 176 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-----YAFVHFEDRQEAITAMNELN 150
+ +YV NL TE+ + F Q G V + K I D YAFV F D A A+ +N
Sbjct: 47 RTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDPYAFVEFADHYTAAQALQAMN 106
Query: 151 GQTVAGSTLEVSLAKPPSDKKK 172
+ + ++V+ A P + K
Sbjct: 107 KRVLLEKEMKVNWATEPGSQAK 128
>gi|393909208|gb|EFO19127.2| hypothetical protein LOAG_09365 [Loa loa]
Length = 421
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQTVA 155
+YV N+ +E L+ AF+++GR+ V+ K YAFV F+ + A A+ ++NGQ +
Sbjct: 273 VYVGNVNSSANDEDLRAAFDKFGRILEVRIFKSQGYAFVRFDKKDSACNAICKMNGQELC 332
Query: 156 GSTLEVSLAKPP 167
G ++ S + P
Sbjct: 333 GQNIKCSWGRTP 344
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 78 VDWA-DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------ 130
V+WA +P + +T SK ++V +L+ + LK+AF +G V K I+D
Sbjct: 144 VNWATEPGSQAKVDT-SKHFHVFVGDLSPEVDNKALKDAFAPFGEVSDAKVIRDATTLKS 202
Query: 131 --YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
Y FV + R+EA A+ ++NGQ + T+ + A
Sbjct: 203 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 238
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-----YAFVHFEDRQEAITAMNELN 150
+ +YV NL TE+ + F Q G V + K I D YAFV F D A A+ +N
Sbjct: 74 RTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDPYAFVEFADHYTAAQALQAMN 133
Query: 151 GQTVAGSTLEVSLAKPPSDKKK 172
+ + ++V+ A P + K
Sbjct: 134 KRVLLEKEMKVNWATEPGSQAK 155
>gi|344301362|gb|EGW31674.1| hypothetical protein SPAPADRAFT_62285 [Spathaspora passalidarum
NRRL Y-27907]
Length = 478
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNE 148
K+LYV NL++ +EE LK+ F G ++ VK + D YAF+ +E+ Q A A+N
Sbjct: 71 KILYVGNLSKSISEEFLKDTFASAGAIQSVKILNDKNKPGFNYAFIEYENNQAADMALNT 130
Query: 149 LNGQTVAGSTLEVSLA 164
+NG+ + ++++ A
Sbjct: 131 MNGKILQNFEIKINWA 146
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVER--------VKRIKDYAFVHFEDRQEAITAMNEL 149
++V +L+ +EKLK+AF ++ +++ R + Y FV F ++ +A A+ +
Sbjct: 165 IFVGDLSPEINDEKLKQAFSKFKSLKQAHVMWDMQTSRSRGYGFVTFSNQSDAELALQTM 224
Query: 150 NGQTVAGSTLEVSLA 164
NG+ + G + + A
Sbjct: 225 NGEWLNGRAIRCNWA 239
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITA 145
+K LY++NL TEE L+E F ++G++ + KD + FV+FE ++A A
Sbjct: 208 AKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRA 267
Query: 146 MNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR--ERRMMQMMQGRG 192
+ LNG + L V+ A+ K ++E++LR + E+R Q+++ RG
Sbjct: 268 LEALNGLQLGSKVLYVARAQ---KKAEREQLLRRQFEEKRNEQILKYRG 313
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+N+ ++ L+E F G++ K ++D + FV F EA A+N +
Sbjct: 316 VYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFH 375
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP---SGAHAPL-LTG 206
G L V++A+ D++ + ++ Q M G GP G + PL T
Sbjct: 376 GYMFHRKPLYVAIAQRKEDRQAQLQL------HYAQRMAGLAGPSTPVIPGGYPPLYYTA 429
Query: 207 PPMPRGSVPLQAALSSTRMG 226
PP G +P + L +G
Sbjct: 430 PP---GVIPPRQGLMYQPLG 446
>gi|541310|pir||S41505 12RNP2 protein - Synechococcus sp. (PCC 6301)
gi|961511|dbj|BAA09863.1| 12kDa RNA-binding, 12RNP2 [Synechococcus elongatus PCC 7942]
Length = 100
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNE 148
+YV NL+ TEE ++E F +YG V RV R++ +AF+ E+ A++E
Sbjct: 2 TIYVGNLSFRATEEDVREVFAEYGPVSRVSLPDDRETGRLRGFAFIEMEEDAHEDAAISE 61
Query: 149 LNGQTVAGSTLEVSLAKPPSDKK 171
L+G G L VS A+P D++
Sbjct: 62 LDGAEWFGRQLRVSKARPKDDRR 84
>gi|397781445|ref|YP_006545918.1| RNA recognition motif-containing protein [Methanoculleus bourgensis
MS2]
gi|396939947|emb|CCJ37202.1| RNA recognition motif-containing protein [Methanoculleus bourgensis
MS2]
Length = 86
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVA 155
LYV NLT EE+LKE F QYG V V+ I K + FV +EA A LN
Sbjct: 6 LYVGNLTYSVNEEQLKELFAQYGTVNDVRVIERKGFGFVEMSSPEEAEKAKEALNDTVFE 65
Query: 156 GSTLEVSLAKPP 167
G TL++ A+PP
Sbjct: 66 GRTLKIDEARPP 77
>gi|55562787|gb|AAH86338.1| Rbm4b protein [Rattus norvegicus]
gi|60334832|gb|AAH90633.1| Rbm4 protein [Mus musculus]
gi|148701114|gb|EDL33061.1| mCG8382, isoform CRA_b [Mus musculus]
gi|149061995|gb|EDM12418.1| rCG48334, isoform CRA_c [Rattus norvegicus]
gi|219841854|gb|AAI44951.1| Rbm4 protein [Mus musculus]
Length = 143
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAG 156
YAFVH E ++A+ A+ L+ G
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQG 138
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>gi|225718298|gb|ACO14995.1| Splicing factor, arginine/serine-rich 4 [Caligus clemensi]
Length = 234
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
LY+ N++ E +++ F+ YG++ + Y FV FED ++A A+ +L+G+ + GS
Sbjct: 8 LYLGNVSDETRERDVEKFFKGYGKLREIALKNGYGFVEFEDHRDADDAVQDLDGKDMNGS 67
Query: 158 TLEVSLAKPPSDKK 171
+ V A+ P DK+
Sbjct: 68 RVRVEFARSPRDKR 81
>gi|340383163|ref|XP_003390087.1| PREDICTED: RNA-binding protein 4-like [Amphimedon queenslandica]
Length = 157
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151
M+ V LYV NL++ T + LKE F +G+V+ V ++ + FVHF +A A+ L+
Sbjct: 1 MANVTKLYVGNLSETVTSKHLKELFGNFGQVDEVAVLRGFGFVHFRRNSDATAALKALDD 60
Query: 152 QTVAGSTLEVSLAKP 166
GS ++V ++
Sbjct: 61 TEFMGSHIQVQVSHS 75
>gi|292490317|ref|YP_003525756.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
gi|291578912|gb|ADE13369.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
Length = 97
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
+YV NL+ T+E+L+ AFE YG V K R K + FV +++A TA+ E+
Sbjct: 3 IYVGNLSYQVTDEELRAAFENYGEVSSAKVIVDKFSNRSKGFGFVEMARQEDAETAIKEM 62
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRM 184
N + G + V+ A+P ++ ++ E +R+RR
Sbjct: 63 NDSDLKGRQIVVNQARPRNEGFRRSEGFGDRQRRF 97
>gi|357465449|ref|XP_003603009.1| RNA-binding protein [Medicago truncatula]
gi|355492057|gb|AES73260.1| RNA-binding protein [Medicago truncatula]
Length = 420
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 89 TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKDYAFVHFEDRQEAITAM 146
++T S ++V L T E L++ F QYG + VK K FV F +R A A+
Sbjct: 285 SDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 344
Query: 147 NELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
+LNG TV T+ +S + P++K+ + E
Sbjct: 345 QKLNGTTVGKQTVRLSWGRNPANKQFRSEF 374
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGPSGAHAPLLTG 206
+ VA L V+LA ++K+E + M +M R P P+ LL G
Sbjct: 356 RIVATKPLYVALA-----QRKEERQAHLTNQYMQRMASVRAVPNPASTSFRLLHG 405
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 13/101 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+Y++N + +E+LK+ F ++G VK + D + FV FE ++A A++E+N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGR 191
G+ + G + V A +KK E +R+ QM Q R
Sbjct: 253 GKELNGKQIYVGRA------QKKVERQTELKRKFEQMKQDR 287
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G + + W+ Q +P S V ++++NL + + L + F +G + K + D
Sbjct: 78 KGKPVRIMWS--QRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 134
Query: 131 -----YAFVHFEDRQEAITAMNELNG 151
Y FVHFE ++ A A+ ++NG
Sbjct: 135 NGSKGYGFVHFETQEAAERAIEKMNG 160
>gi|28839776|gb|AAH47836.1| Zgc:56141 protein [Danio rerio]
gi|197247072|gb|AAI65109.1| Zgc:56141 protein [Danio rerio]
Length = 249
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVH 135
++ + + P E+ + LY+ NL Q ++LK F QYG V IK++AFVH
Sbjct: 54 VLANMSHPNIVQYKESFEESGCLYIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVH 113
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
+DR+ A A+ L+ + G+ + V ++
Sbjct: 114 MDDRKSATKAIKNLHLYKLHGTPINVEASR 143
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V N+ + T+++L+ FE YG V IK++AFVH + EA+ A+ L+ G
Sbjct: 152 LHVANVEK-GTDDELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGK 210
Query: 158 TLEVSLAK 165
+ V ++K
Sbjct: 211 RIHVQISK 218
>gi|149062001|gb|EDM12424.1| rCG48244, isoform CRA_b [Rattus norvegicus]
Length = 172
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
YAFVH E ++A+ A+ L+ G L L PS
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGE-LFWGLGGRPS 149
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>gi|159164258|pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In Rna-Binding
Protein 30
Length = 90
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 11 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 70
Query: 158 TLEVSLAKPPS 168
+ V +K S
Sbjct: 71 NINVEASKNKS 81
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,630,298,039
Number of Sequences: 23463169
Number of extensions: 154637866
Number of successful extensions: 457651
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2282
Number of HSP's successfully gapped in prelim test: 14060
Number of HSP's that attempted gapping in prelim test: 436864
Number of HSP's gapped (non-prelim): 26613
length of query: 230
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 92
effective length of database: 9,121,278,045
effective search space: 839157580140
effective search space used: 839157580140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 74 (33.1 bits)