BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1188
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 436
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 81/117 (69%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 230 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 289
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGP 194
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R + M GP
Sbjct: 290 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP 346
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 82/110 (74%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
G + V+WADP EEPD E M+KVKVL+VRNL TEE L+++F ++G++ERVK++KDYA
Sbjct: 318 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYA 377
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
FVHFEDR A+ AM+E+NG+ + G +E+ LAKPP K+K+ + R R
Sbjct: 378 FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASR 427
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 32 EEKP----SSERTPDYTKLLEYGLDKRIAGKLDDIFKTG 66
EE+P S T Y L+E GL +++A +LD+IF+TG
Sbjct: 15 EEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTG 53
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPV-----------NKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 114 bits (284), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 13/125 (10%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AM+ +NG+ + G+++EV+LAKP N+E Q + G
Sbjct: 273 YAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKP-----------VNKENTWRQHLNG 321
Query: 191 RGGPG 195
+ P
Sbjct: 322 QISPN 326
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P++E D ETM +V+VLYVRNL TEE L+ F Q G VERVK++ D
Sbjct: 197 GHTIQVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTD 256
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAF+HF +R++A+TA+ +NG+ + GS +EV+LAKP S K R R +
Sbjct: 257 YAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKPASKDGNK----RFGPRNCHNGVTA 312
Query: 191 RGGPGPS 197
GG G S
Sbjct: 313 AGGYGDS 319
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 82/132 (62%), Gaps = 11/132 (8%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AMN LNG + GS LEV+LAKP + + + R + +G
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP---------VDKEQYSRYQKAAKG 333
Query: 191 RGGPGPSGAHAP 202
GG + A P
Sbjct: 334 GGGSAEAVAQQP 345
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 81/132 (61%), Gaps = 11/132 (8%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K +F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKRSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF R++A+ AMN LNG + GS LEV+LAKP + + + R + +G
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP---------VDKEQYSRYQKAAKG 333
Query: 191 RGGPGPSGAHAP 202
GG + A P
Sbjct: 334 GGGSAEAVAQQP 345
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 225 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 284
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 285 YAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKP 320
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AMN LNG + GS LEV+LAKP
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKP 318
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 4/120 (3%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQG 190
YAFVHF +R++A+ AM LNG+ + GS +EV+LAK P DK R R M+QG
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK-PVDKDSYVRYTRGTGGRNT-MLQG 325
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+++ L + E++L E+ G++ ++ + D YAFV F ++QEA A+ +LN
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEAKNAIKQLN 117
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+++ L + E++L E+ G++ ++ + D YAFV F ++QEA A+ +LN
Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLN 117
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I V WA P++E D ETM KVKVLYVRNL TEE +K F +Y G VERVK+I+D
Sbjct: 213 GHTIKVAWASPEKEVDEETMQKVKVLYVRNLMMSTTEETIKAEFNRYKPGVVERVKKIRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R AI AM+ +NG+ + G+ +EV+LAKP
Sbjct: 273 YAFVHFFRRDYAIAAMSVMNGRLIDGARIEVTLAKP 308
>sp|Q5RC41|RBM14_PONAB RNA-binding protein 14 OS=Pongo abelii GN=RBM14 PE=2 SV=1
Length = 669
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2
Length = 669
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMSRP 73
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 OS=Bos taurus GN=RBM14 PE=2 SV=1
Length = 669
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAK 165
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSR 72
Query: 166 P 166
P
Sbjct: 73 P 73
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 OS=Mus musculus GN=Rbm14 PE=1 SV=1
Length = 669
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPRP------LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 108 TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV-AGSTLEVSLAKP 166
T E+L F YG V +K +AFVH + A+ A+ L+G + G L V +++P
Sbjct: 14 TPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSRP 73
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLL 70
K + REA E+ Y K+LE YG DK A +D + H
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYK 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G +I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LHGVNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A+ L+ G + V L+
Sbjct: 113 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKASTKLHV 82
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 20/146 (13%)
Query: 29 REAEEKPSSERTPDYTKLLE------YGL----DKRIAGKLDDIFKTGKHLLSRGCDIIV 78
REA E+ Y K+LE YG DK A +D + H G +I V
Sbjct: 11 REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAA---EDAIRNLHHYKLHGVNINV 67
Query: 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFED 138
+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAFVH E
Sbjct: 68 EASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER 120
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLA 164
++A+ A+ L+ G + V L+
Sbjct: 121 AEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKKEEI 176
+ V +K S K +
Sbjct: 64 NINVEASKNKSKTSTKLHV 82
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150
LY++NL +EKLKE F +YG V K + + + FV + + +EA+ AM E+N
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 403
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQM------MQGR-----GGPGPSGA 199
G+ + L V+LA+ +++ + L + R M M G GGP SG
Sbjct: 404 GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPM-SGP 462
Query: 200 HAPLLTG 206
H P+ G
Sbjct: 463 HHPMFIG 469
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL + T+++LK+ F +YG + +KD + FV+F + A A+ ++N
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRER 182
G ++ L V A+ SD ++EE+ R E+
Sbjct: 301 GISLGEDVLYVGRAQKKSD--REEELRRKFEQ 330
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRV-------ERVKRIKDYAFVHFED 138
+P T K V +++NL + L E F +G + + V R K Y FV FE
Sbjct: 137 DPSTRLSGKGNV-FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEK 195
Query: 139 RQEAITAMNELNG 151
+ A A+++LNG
Sbjct: 196 EETAQAAIDKLNG 208
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV +L E L + F Q V ++ +D YA+V+F + ++A AM LN
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 120
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 60 DDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY 119
D+ + H + G + V+ + + +P T T L+V N++ CT ++L+ FE+Y
Sbjct: 49 DEAIQNLHHYMLNGMAMNVEMS--KGKPKTSTK-----LHVGNISSSCTNQELRAKFEEY 101
Query: 120 GRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
G V +KDYAFVH E ++A+ A++ L+ G + V L+
Sbjct: 102 GPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLS 146
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
++V NL+ T E+++ F QYG++ +K++ FVH + + EA A+ L+ + G
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNGM 63
Query: 158 TLEVSLAK 165
+ V ++K
Sbjct: 64 AMNVEMSK 71
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAIT 144
++KV +YV+N+ TEE+L++ F Q G + K + D + FV F +EAI
Sbjct: 300 IAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAID 359
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEI-LRNRERRMMQMMQGRGGPGPSGAHAPL 203
A+ +GQ G L V++A+ D+K + ++ NR P G +APL
Sbjct: 360 AVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNP---GTYAPL 416
Query: 204 L---TGPPMPRGSVPL 216
T P M S PL
Sbjct: 417 YYTNTHPGMVYQSYPL 432
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LY++NL +E+ L+E F ++G++ + KD YAFV+F++ ++A A +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILR 178
G L V A+ K ++E++LR
Sbjct: 263 GTKFGSKCLYVGRAQ---KKAEREQLLR 287
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
++V+NL + T L++ F+++G + K + + Y FV FE A A+ LN
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRN 179
VA + V +D+ K EE N
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPEEKYTN 202
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV +L TE L +AF ++ + V+ KD Y + +F RQ+A A+ +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 150 NGQTVAGSTLEV 161
N + G + V
Sbjct: 86 NNSLLNGKMIRV 97
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKVD---NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAF 133
+P E+P ++ K L++RNL EE ++ F QYG +E V + K +A
Sbjct: 287 EPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAH 346
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEE 175
V FED + AI A +G+ G L + KP D + +E
Sbjct: 347 VQFEDPENAIAAYEAQDGKIFQGRLLHILPGKPKKDYNRLDE 388
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
L+++NL +E+LK F +G + K + D + FV + +EA A+ E+N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEI---LRNRERRMMQMMQGRGGPGPS-GAHAPLLTG 206
+ +AG L V+LA+ ++ + E RN+ R Q+ G P GA PL+ G
Sbjct: 426 QRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYG 485
Query: 207 PPMPRGSVPLQAALSSTRMGRG 228
P G P+ AA++ GRG
Sbjct: 486 P----GGYPIPAAVN----GRG 499
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
Query: 90 ETMSKVKVL-------YVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
E SKV+ L Y++NL TE++ + F Q+G + + +KD + FV+
Sbjct: 248 ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVN 307
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRM 184
+ + + A A++ELN + G L V A+ K ++EE LR R +M
Sbjct: 308 YANHECAQKAVDELNDKEYKGKKLYVGRAQ---KKHEREEELRKRYEQM 353
Score = 38.9 bits (89), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGR-------VER 124
R C I+ W+ Q +P M V +++NL + L + F +G+ V+
Sbjct: 149 RPCRIM--WS--QRDPSLRKMGTGNV-FIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE 203
Query: 125 VKRIKDYAFVHFEDRQEAITAMNELNG 151
+ K Y FVHF+ + A A+ +NG
Sbjct: 204 LGNAKGYGFVHFDSVESANAAIEHVNG 230
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV L TE L E F G V ++ +D YA+V+F + ++ A++EL
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 150 NGQTVAG 156
N + G
Sbjct: 142 NYTLIKG 148
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK 165
+++A AM+ ++G + G L V +A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 18/111 (16%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150
LY++NL +EKLKE F +YG V K + + + FV + + +EA+ A++E+N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP-SGAH 200
G+ + L ++LA+ D++ + L ++ R PGP SG H
Sbjct: 394 GKMIGRKPLYIALAQRKEDRRAHLQALFSQIR----------APGPMSGFH 434
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 10/90 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL + E++L++ F ++G + ++D + FV+FE + A +A+ ++N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNR 180
G ++ L V A+ K ++EE LR +
Sbjct: 291 GISLGDDVLYVGRAQ---KKSEREEELRRK 317
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-- 126
L R I++ DP + +S ++++NL + L E F +G + K
Sbjct: 114 LFDRPIRIMLSNRDP-----STRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVA 168
Query: 127 -----RIKDYAFVHFEDRQEAITAMNELNG 151
R K Y FV FE + A A+++LNG
Sbjct: 169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQ 140
+ E S LYV+NL +++L+ FE +G + K ++D + FV +
Sbjct: 322 ENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPD 381
Query: 141 EAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR--ERRMMQMMQGRGGPGPSG 198
EA A++E+NG+ + L V+LA+ K + + L ++ +R +M G G PG G
Sbjct: 382 EATKAVSEMNGKMIGTKPLYVALAQ---RKDVRRQALESQIAQRAQQRMQYGAGFPGMQG 438
Query: 199 AHA-PLLTGPPMPRGSVPL 216
P+ PPMP P+
Sbjct: 439 YMGQPMYGYPPMPGYGQPM 457
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 90 ETMSKVKVL-------YVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
E +SKV+ L Y++N+ T+ + ++ + +G V +D + FV+
Sbjct: 214 ERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVN 273
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
+E+ + A A++ELN + V G L A+ + +++ E+ ++ E + ++
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRAQ--TKSEREAELKKSHEEKRLE 322
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
++++NL Q + L + F +G + K + + +AFVH+ + A A+ +N
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVN 195
Query: 151 G 151
G
Sbjct: 196 G 196
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQ 140
+ E S LYV+NL +++L+ FE +G + K ++D + FV +
Sbjct: 322 ENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPD 381
Query: 141 EAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR--ERRMMQMMQGRGGPGPSG 198
EA A++E+NG+ + L V+LA+ K + + L ++ +R +M G G PG G
Sbjct: 382 EATKAVSEMNGKMIGTKPLYVALAQ---RKDVRRQALESQIAQRAQQRMQYGAGFPGMQG 438
Query: 199 AHA-PLLTGPPMPRGSVPL 216
P+ PPMP P+
Sbjct: 439 YMGQPMYGYPPMPGYGQPM 457
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 90 ETMSKVKVL-------YVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
E +SKV+ L Y++N+ T+ + ++ + +G V +D + FV+
Sbjct: 214 ERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVN 273
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQ 186
+E+ + A A++ELN + V G L A+ + +++ E+ ++ E + ++
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRAQ--TKSEREAELKKSHEEKRLE 322
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
++++NL Q + L + F +G + K + + +AFVH+ + A A+ +N
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVN 195
Query: 151 G 151
G
Sbjct: 196 G 196
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--- 130
C ++ + P E +TE SK L V L Q T+E+LK F G +E K ++D
Sbjct: 46 CPNTINCSSPVESNNTED-SKTN-LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 103
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
Y FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 104 EGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 147
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV L + T+++L++ F QYGR+ + + D F+ F+ R EA A+ L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 150 NGQTVAGST--LEVSLAKPPSDK 170
NGQ G+T + V A PS K
Sbjct: 215 NGQKPPGATEPITVKFANNPSQK 237
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHFEDRQEAITAMNELN 150
L+V+NL + EKL+E F+ +G + K + K + FV F +EA A+ E+N
Sbjct: 353 LFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMN 412
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK-EEILRNRERRMMQMMQGRGGPGPSGAHAPLLTG--- 206
+ V G L V+LA+ ++ + E+ ++ R + MQ GG P P+ G
Sbjct: 413 QRMVNGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGGL-PGQFMPPMFYGQQG 471
Query: 207 --PPMPRGSVPLQAALSSTRM-GRG 228
PP RG+ P M GRG
Sbjct: 472 FFPPNGRGNAPFPGPNPQMMMRGRG 496
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+N+ TE++ +E F +G++ + KD + FV+FE+ + A A+ ELN
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELN 309
Query: 151 GQTVAGSTLEVSLAK 165
+ + G + V A+
Sbjct: 310 DKEINGQKIYVGRAQ 324
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
R C I+ DP + S ++++NL + L + F +G++ VK D
Sbjct: 136 RPCRIMWSQRDP-----SARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDD 190
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
+ FVH+E + A A+ +NG + + EV + K S K ++ ++
Sbjct: 191 LGQSKCFGFVHYETEEAAQAAIESVNGMLL--NDREVYVGKHVSKKDRESKL 240
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFE 137
Q + D T +V LYV+NL +E+L++AF +G + K R K + FV F
Sbjct: 282 QMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPG-- 195
+EA A+ E+NG+ VA L V+LA+ K++++ L N M +M R P
Sbjct: 342 SPEEATKAVTEMNGRIVATKPLYVALAQ---RKEERQAYLTN--EYMQRMASVRAVPNQR 396
Query: 196 --PSG 198
PSG
Sbjct: 397 APPSG 401
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVK---VLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
+L G + V ++E + E ++ K +Y++N + +E+LK+ F ++G V
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 KRIKD-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
K + D + FV FE ++A A++E+NG+ + G + V A +KK E
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA------QKKVERQT 274
Query: 179 NRERRMMQMMQGR 191
+R QM Q R
Sbjct: 275 ELKRTFEQMKQDR 287
Score = 37.7 bits (86), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD- 130
+G + + W+ Q +P S V ++V+NL + + L + +G + + D
Sbjct: 78 KGKPVRIMWS--QRDPSLRK-SGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE 134
Query: 131 -----YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
Y FVHFE + A A+ ++NG + G + V K S K+++ E+
Sbjct: 135 NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK--SRKEREAEL 183
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV +L TE L E F G + ++ +D YA+V+F+ ++A A++ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 150 NGQTVAGSTLEV 161
N + G + +
Sbjct: 73 NFDVIKGKPVRI 84
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 35/152 (23%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
L+++NL +EKLKE F YG + + ++D + FV F +EA AM E N
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKN 395
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK--EEI-LRNRER-------------------RMMQMM 188
Q VAG L V++A+ ++ + ++I RN+ R M QM
Sbjct: 396 QQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQYMPQMF 455
Query: 189 QG----RGGPGPS-GAHAPLLTGPPMPRGSVP 215
G RG PGP+ G + P+ G P G VP
Sbjct: 456 YGVMAPRGFPGPNPGMNGPMGAGIP-KNGMVP 486
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 61 DIFKTGKHLLSRGCDIIVDWADPQEEPDT---ETMSKVKVLYVRNLTQYCTEEKLKEAFE 117
D + +L G ++ V P+++ + E + +YV+N+ T+E+ ++ F
Sbjct: 193 DAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFS 252
Query: 118 QYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165
QYG + KD + FV+F D A A+ ELNG+ L V A+
Sbjct: 253 QYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQ 307
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
++++NL + L E F +G V K D + FVHF++ +A A+ +N
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEE 175
G + G + V++ P D+ K E
Sbjct: 200 GMLMNGLEVYVAMHVPKKDRISKLE 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,309,378
Number of Sequences: 539616
Number of extensions: 3811343
Number of successful extensions: 12960
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 509
Number of HSP's that attempted gapping in prelim test: 11667
Number of HSP's gapped (non-prelim): 1438
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)