Query psy1188
Match_columns 230
No_of_seqs 269 out of 2424
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 21:18:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117|consensus 100.0 1E-31 2.2E-36 224.3 14.3 154 17-172 162-336 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 7.6E-29 1.6E-33 220.5 16.7 151 18-170 137-310 (578)
3 TIGR01659 sex-lethal sex-letha 100.0 9.6E-28 2.1E-32 203.5 16.7 143 18-169 106-277 (346)
4 KOG0109|consensus 99.9 1.1E-26 2.3E-31 185.0 6.0 143 19-168 2-151 (346)
5 KOG0144|consensus 99.9 1.1E-25 2.4E-30 187.6 9.8 150 17-171 32-210 (510)
6 KOG0148|consensus 99.9 1.1E-24 2.4E-29 172.0 14.6 148 19-170 62-241 (321)
7 TIGR01628 PABP-1234 polyadenyl 99.9 5.9E-24 1.3E-28 192.7 19.7 150 18-171 177-368 (562)
8 TIGR01645 half-pint poly-U bin 99.9 1.4E-24 3.1E-29 193.7 14.6 147 18-168 106-285 (612)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 3E-24 6.4E-29 184.1 15.8 149 18-168 88-350 (352)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.1E-23 1.5E-27 175.5 17.3 143 19-170 3-174 (352)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.8E-23 8.2E-28 183.8 14.7 146 21-168 4-175 (481)
12 TIGR01628 PABP-1234 polyadenyl 99.9 1.7E-22 3.7E-27 183.2 16.0 164 3-170 72-264 (562)
13 TIGR01622 SF-CC1 splicing fact 99.9 2.6E-22 5.7E-27 177.7 14.3 145 18-167 88-266 (457)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.9E-22 1.7E-26 175.4 14.1 144 20-167 276-480 (481)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 9.4E-22 2E-26 176.4 14.1 145 18-167 174-375 (509)
16 KOG0127|consensus 99.8 3.3E-20 7.2E-25 159.0 11.9 149 19-171 5-200 (678)
17 PLN03134 glycine-rich RNA-bind 99.8 3E-19 6.5E-24 133.8 15.3 75 93-167 32-114 (144)
18 KOG0148|consensus 99.8 1.1E-20 2.5E-25 149.4 7.4 132 17-168 4-143 (321)
19 KOG0145|consensus 99.8 7.9E-20 1.7E-24 144.0 11.1 142 21-171 43-213 (360)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.8 2.9E-19 6.3E-24 160.3 13.7 145 18-166 294-501 (509)
21 TIGR01648 hnRNP-R-Q heterogene 99.8 5.9E-19 1.3E-23 157.5 11.4 135 19-168 58-223 (578)
22 KOG0127|consensus 99.8 1.9E-18 4.2E-23 148.3 12.5 148 19-170 117-381 (678)
23 KOG0145|consensus 99.8 4.1E-18 8.9E-23 134.4 12.4 146 20-167 128-358 (360)
24 KOG0131|consensus 99.8 9.3E-19 2E-23 131.2 6.8 146 18-171 8-181 (203)
25 KOG0117|consensus 99.7 2.3E-17 5.1E-22 138.7 11.6 139 19-171 83-252 (506)
26 TIGR01622 SF-CC1 splicing fact 99.7 5.9E-17 1.3E-21 143.6 14.2 144 19-166 186-447 (457)
27 KOG0124|consensus 99.7 1.7E-17 3.7E-22 136.5 8.3 145 19-167 113-290 (544)
28 KOG0123|consensus 99.7 3.4E-17 7.5E-22 140.0 10.4 134 22-173 4-159 (369)
29 KOG0110|consensus 99.7 2.1E-17 4.5E-22 145.8 9.1 149 17-169 513-695 (725)
30 PF00076 RRM_1: RNA recognitio 99.7 6.2E-17 1.4E-21 106.2 9.0 63 98-160 1-70 (70)
31 KOG4205|consensus 99.7 1.6E-17 3.5E-22 137.7 6.8 152 18-171 5-180 (311)
32 KOG0123|consensus 99.7 1.9E-16 4.2E-21 135.4 10.6 155 2-167 66-246 (369)
33 TIGR01659 sex-lethal sex-letha 99.7 2E-16 4.4E-21 134.5 10.3 76 93-168 105-188 (346)
34 KOG0125|consensus 99.7 3.6E-16 7.7E-21 127.1 8.9 75 95-169 96-176 (376)
35 PLN03120 nucleic acid binding 99.7 9.1E-16 2E-20 123.3 10.7 71 95-166 4-79 (260)
36 KOG0107|consensus 99.6 8E-16 1.7E-20 114.8 7.9 74 95-168 10-86 (195)
37 KOG0122|consensus 99.6 5.4E-15 1.2E-19 115.9 9.9 75 93-167 187-269 (270)
38 PF14259 RRM_6: RNA recognitio 99.6 7.5E-15 1.6E-19 96.5 8.9 63 98-160 1-70 (70)
39 PLN03213 repressor of silencin 99.6 7.3E-15 1.6E-19 125.3 9.9 74 94-167 9-88 (759)
40 KOG0105|consensus 99.6 1.3E-14 2.8E-19 109.3 10.0 134 18-155 5-176 (241)
41 KOG0114|consensus 99.6 1.6E-14 3.5E-19 98.8 9.4 76 95-170 18-98 (124)
42 KOG0121|consensus 99.6 4E-15 8.6E-20 105.6 6.6 75 93-167 34-116 (153)
43 KOG0146|consensus 99.6 4.8E-15 1E-19 117.6 5.8 77 94-170 284-368 (371)
44 KOG0109|consensus 99.6 5.7E-15 1.2E-19 118.4 6.3 72 97-168 4-75 (346)
45 KOG0149|consensus 99.6 7.6E-15 1.6E-19 114.6 6.6 72 94-166 11-90 (247)
46 KOG0105|consensus 99.5 2.3E-14 5E-19 108.0 8.5 74 94-167 5-83 (241)
47 TIGR01645 half-pint poly-U bin 99.5 2.4E-14 5.3E-19 128.5 9.9 72 94-165 106-185 (612)
48 PLN03121 nucleic acid binding 99.5 6E-14 1.3E-18 111.2 10.2 72 94-166 4-80 (243)
49 KOG0147|consensus 99.5 5.2E-15 1.1E-19 127.6 3.9 143 21-168 181-359 (549)
50 KOG4207|consensus 99.5 1.9E-14 4.2E-19 110.2 6.4 73 94-166 12-92 (256)
51 smart00362 RRM_2 RNA recogniti 99.5 9.4E-14 2E-18 90.5 9.0 66 97-162 1-72 (72)
52 KOG1457|consensus 99.5 3.3E-14 7.3E-19 110.1 7.6 136 15-154 30-273 (284)
53 KOG0111|consensus 99.5 1.1E-14 2.4E-19 112.5 4.4 78 94-171 9-94 (298)
54 PF13893 RRM_5: RNA recognitio 99.5 1.6E-13 3.5E-18 86.2 8.7 53 112-164 1-56 (56)
55 KOG0113|consensus 99.5 1.2E-13 2.7E-18 111.1 9.6 90 93-197 99-196 (335)
56 KOG0106|consensus 99.5 2.1E-14 4.6E-19 112.6 5.0 142 20-165 2-169 (216)
57 KOG0110|consensus 99.5 9.4E-14 2E-18 123.0 9.0 140 22-165 388-596 (725)
58 KOG4206|consensus 99.5 3.2E-13 7E-18 105.1 9.6 141 21-165 11-220 (221)
59 KOG0130|consensus 99.5 1.8E-13 3.9E-18 98.1 7.3 79 89-167 66-152 (170)
60 cd00590 RRM RRM (RNA recogniti 99.5 8.6E-13 1.9E-17 86.4 9.4 67 97-163 1-74 (74)
61 smart00360 RRM RNA recognition 99.4 6.1E-13 1.3E-17 86.3 7.7 63 100-162 1-71 (71)
62 COG0724 RNA-binding proteins ( 99.4 1.2E-12 2.5E-17 107.2 9.8 72 95-166 115-194 (306)
63 KOG0131|consensus 99.4 9.8E-13 2.1E-17 99.0 6.4 74 94-167 8-89 (203)
64 KOG4206|consensus 99.4 1.7E-12 3.7E-17 101.1 7.9 79 94-172 8-95 (221)
65 KOG0146|consensus 99.4 1.3E-12 2.8E-17 103.9 7.3 92 74-170 3-104 (371)
66 KOG0108|consensus 99.4 1.8E-12 3.8E-17 112.3 8.3 75 96-170 19-101 (435)
67 KOG4211|consensus 99.3 3.9E-11 8.4E-16 102.8 14.8 140 23-165 14-180 (510)
68 KOG0153|consensus 99.3 5.2E-12 1.1E-16 103.7 8.8 74 94-167 227-303 (377)
69 KOG0126|consensus 99.3 4.8E-13 1.1E-17 100.6 1.9 74 94-167 34-115 (219)
70 KOG1190|consensus 99.3 1.6E-11 3.4E-16 102.9 10.7 148 21-170 152-376 (492)
71 KOG0144|consensus 99.3 7.4E-12 1.6E-16 105.5 7.8 78 93-170 32-120 (510)
72 KOG0132|consensus 99.3 7.8E-12 1.7E-16 111.9 7.9 78 94-171 420-499 (894)
73 smart00361 RRM_1 RNA recogniti 99.3 2.7E-11 5.8E-16 79.6 7.1 54 109-162 2-70 (70)
74 KOG0415|consensus 99.2 2.1E-11 4.4E-16 100.5 6.8 76 92-167 236-319 (479)
75 KOG1190|consensus 99.2 1E-10 2.2E-15 98.1 10.5 141 22-166 300-490 (492)
76 KOG0124|consensus 99.2 2.1E-11 4.6E-16 100.9 4.4 71 95-165 113-191 (544)
77 KOG1456|consensus 99.2 2E-10 4.3E-15 95.4 9.9 152 18-171 29-203 (494)
78 KOG4661|consensus 99.1 1.2E-10 2.5E-15 101.5 7.6 73 94-166 404-484 (940)
79 KOG4212|consensus 99.1 9.4E-11 2E-15 99.1 6.7 72 93-164 534-608 (608)
80 KOG0116|consensus 99.1 3.6E-10 7.9E-15 97.5 9.8 73 96-169 289-369 (419)
81 KOG4212|consensus 99.1 3.2E-10 6.9E-15 96.0 8.6 72 94-165 43-122 (608)
82 KOG1548|consensus 99.1 1.3E-09 2.9E-14 89.7 11.7 145 20-168 135-353 (382)
83 KOG1457|consensus 99.0 4.7E-09 1E-13 81.8 10.5 76 94-169 33-120 (284)
84 KOG0106|consensus 99.0 4.4E-10 9.5E-15 88.4 4.1 71 97-167 3-73 (216)
85 KOG0151|consensus 98.9 2.5E-09 5.4E-14 95.3 7.0 74 93-166 172-256 (877)
86 KOG0226|consensus 98.9 7E-09 1.5E-13 82.2 6.8 99 70-168 164-271 (290)
87 KOG4205|consensus 98.9 2.2E-09 4.8E-14 89.5 4.1 77 94-171 5-89 (311)
88 KOG4208|consensus 98.8 1.9E-08 4.2E-13 77.5 7.8 74 94-167 48-130 (214)
89 KOG4660|consensus 98.8 5.7E-09 1.2E-13 90.9 4.0 68 93-160 73-143 (549)
90 KOG0533|consensus 98.7 5E-08 1.1E-12 78.5 8.4 76 94-169 82-164 (243)
91 KOG0129|consensus 98.7 8.3E-08 1.8E-12 83.1 10.3 129 19-148 259-432 (520)
92 PF11608 Limkain-b1: Limkain b 98.7 1.4E-07 3E-12 62.6 8.1 69 96-166 3-76 (90)
93 KOG0112|consensus 98.7 9.5E-09 2.1E-13 93.8 3.3 147 17-170 370-534 (975)
94 PF08777 RRM_3: RNA binding mo 98.7 1E-07 2.2E-12 67.5 6.9 70 96-165 2-78 (105)
95 KOG0147|consensus 98.6 2.1E-07 4.6E-12 81.1 9.6 145 17-165 276-526 (549)
96 KOG1456|consensus 98.6 1.6E-06 3.5E-11 72.5 14.0 143 23-167 126-363 (494)
97 KOG0120|consensus 98.6 6.1E-08 1.3E-12 85.0 5.8 151 12-166 282-491 (500)
98 KOG4454|consensus 98.6 1.8E-08 3.8E-13 78.4 1.5 73 95-167 9-87 (267)
99 KOG4209|consensus 98.6 8.6E-08 1.9E-12 77.1 5.4 73 94-167 100-180 (231)
100 KOG1548|consensus 98.6 2E-07 4.3E-12 77.1 7.4 73 95-167 134-221 (382)
101 PLN03134 glycine-rich RNA-bind 98.6 8.7E-08 1.9E-12 71.8 4.5 64 19-86 34-116 (144)
102 KOG4210|consensus 98.6 1E-07 2.2E-12 79.2 5.4 148 17-169 86-266 (285)
103 COG0724 RNA-binding proteins ( 98.5 3.4E-07 7.4E-12 74.6 6.9 106 19-128 115-258 (306)
104 PF04059 RRM_2: RNA recognitio 98.4 1.6E-06 3.4E-11 60.1 8.2 73 96-168 2-88 (97)
105 KOG0120|consensus 98.4 7.2E-07 1.6E-11 78.4 5.8 154 17-170 173-372 (500)
106 KOG2193|consensus 98.2 1.4E-07 3.1E-12 79.8 -2.2 136 20-165 2-155 (584)
107 KOG0107|consensus 98.2 8.6E-07 1.9E-11 66.8 2.0 64 19-86 10-87 (195)
108 COG5175 MOT2 Transcriptional r 98.2 4.7E-06 1E-10 69.0 6.1 70 96-165 115-201 (480)
109 KOG4211|consensus 98.1 7.6E-06 1.6E-10 70.8 7.5 71 94-166 9-85 (510)
110 PF00076 RRM_1: RNA recognitio 98.1 2.9E-06 6.4E-11 54.8 2.6 52 22-77 1-70 (70)
111 PLN03120 nucleic acid binding 98.0 5.3E-06 1.2E-10 67.2 4.1 64 19-87 4-83 (260)
112 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.8E-05 3.9E-10 48.7 5.3 50 96-146 2-53 (53)
113 KOG1365|consensus 98.0 3.9E-05 8.4E-10 64.6 8.3 71 95-165 280-360 (508)
114 KOG1855|consensus 97.9 1.2E-05 2.6E-10 68.5 4.6 85 67-152 204-309 (484)
115 KOG0128|consensus 97.9 2.5E-06 5.3E-11 78.1 -0.7 141 18-170 666-818 (881)
116 KOG3152|consensus 97.8 1.4E-05 3E-10 63.8 2.7 65 94-158 73-157 (278)
117 PF08952 DUF1866: Domain of un 97.8 0.00016 3.5E-09 53.5 8.1 74 94-168 26-108 (146)
118 KOG0149|consensus 97.8 9.9E-06 2.2E-10 64.0 1.7 60 19-83 12-90 (247)
119 KOG0121|consensus 97.8 1.4E-05 3E-10 57.4 2.0 60 18-81 35-113 (153)
120 KOG2193|consensus 97.8 3.1E-05 6.8E-10 66.0 4.2 77 97-173 3-82 (584)
121 KOG1995|consensus 97.7 8.6E-05 1.9E-09 62.1 6.7 76 93-168 64-155 (351)
122 PF14259 RRM_6: RNA recognitio 97.7 3.6E-05 7.7E-10 50.0 3.5 52 22-77 1-70 (70)
123 PLN03213 repressor of silencin 97.7 3E-05 6.5E-10 67.3 3.2 63 19-84 10-88 (759)
124 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00025 5.5E-09 49.5 7.2 69 96-166 7-91 (100)
125 KOG4849|consensus 97.7 0.00019 4.1E-09 59.9 7.5 72 94-165 79-161 (498)
126 KOG0125|consensus 97.7 6.5E-05 1.4E-09 62.1 4.6 81 16-100 93-190 (376)
127 KOG0122|consensus 97.6 5.8E-05 1.3E-09 60.0 3.8 61 20-84 190-269 (270)
128 KOG0153|consensus 97.6 6E-05 1.3E-09 62.7 3.7 63 18-83 227-302 (377)
129 KOG2202|consensus 97.5 4.5E-05 9.7E-10 61.1 1.7 57 111-167 84-148 (260)
130 KOG0111|consensus 97.5 0.00012 2.6E-09 57.4 4.0 64 19-86 10-92 (298)
131 KOG1365|consensus 97.4 0.00041 8.9E-09 58.6 6.7 139 23-162 64-238 (508)
132 PLN03121 nucleic acid binding 97.4 0.00015 3.4E-09 58.0 3.5 59 19-82 5-79 (243)
133 KOG0113|consensus 97.4 8.6E-05 1.9E-09 60.7 2.0 72 9-84 91-181 (335)
134 KOG1996|consensus 97.4 0.00057 1.2E-08 55.9 6.5 68 98-165 284-365 (378)
135 KOG0126|consensus 97.4 8.6E-05 1.9E-09 56.6 1.6 67 17-87 33-118 (219)
136 KOG4307|consensus 97.4 0.00054 1.2E-08 62.0 6.7 68 96-163 868-943 (944)
137 KOG0115|consensus 97.3 0.00045 9.8E-09 55.4 5.3 82 70-163 18-110 (275)
138 KOG0129|consensus 97.3 0.0014 2.9E-08 57.6 8.5 72 94-168 258-342 (520)
139 KOG2416|consensus 97.3 0.001 2.2E-08 59.2 7.5 76 91-166 440-521 (718)
140 smart00362 RRM_2 RNA recogniti 97.2 0.00029 6.2E-09 44.9 2.7 54 21-78 1-71 (72)
141 KOG0114|consensus 97.2 0.00027 5.8E-09 49.0 2.2 71 9-83 8-94 (124)
142 KOG4676|consensus 97.2 0.00044 9.5E-09 58.6 3.8 69 96-165 8-87 (479)
143 KOG0132|consensus 97.1 0.0004 8.6E-09 63.5 3.5 67 15-85 417-496 (894)
144 KOG4207|consensus 97.1 0.00023 4.9E-09 55.4 1.2 63 17-83 11-92 (256)
145 KOG2314|consensus 97.0 0.0015 3.2E-08 57.9 5.6 70 96-165 59-142 (698)
146 KOG0130|consensus 97.0 0.00038 8.2E-09 50.6 1.4 59 22-84 75-152 (170)
147 PF10309 DUF2414: Protein of u 96.9 0.0055 1.2E-07 38.7 6.5 53 96-149 6-62 (62)
148 cd00590 RRM RRM (RNA recogniti 96.9 0.001 2.2E-08 42.5 3.0 56 21-80 1-74 (74)
149 KOG4454|consensus 96.8 5.4E-05 1.2E-09 59.3 -4.1 114 19-154 9-150 (267)
150 PF15023 DUF4523: Protein of u 96.6 0.012 2.5E-07 43.4 6.9 72 93-165 84-160 (166)
151 KOG2068|consensus 96.6 0.00071 1.5E-08 56.4 0.6 71 97-167 79-163 (327)
152 KOG0108|consensus 96.6 0.0016 3.4E-08 57.2 2.7 61 20-84 19-98 (435)
153 smart00360 RRM RNA recognition 96.6 0.0013 2.9E-08 41.5 1.7 51 24-78 1-70 (71)
154 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0084 1.8E-07 46.4 6.4 72 95-166 7-97 (176)
155 PF13893 RRM_5: RNA recognitio 96.5 0.0025 5.4E-08 39.3 2.8 34 44-81 23-56 (56)
156 PF04847 Calcipressin: Calcipr 96.5 0.0047 1E-07 48.1 4.8 61 108-168 8-72 (184)
157 PF08675 RNA_bind: RNA binding 96.5 0.024 5.1E-07 37.9 7.2 55 96-151 10-64 (87)
158 PF03880 DbpA: DbpA RNA bindin 96.5 0.022 4.7E-07 37.5 7.1 67 97-164 2-74 (74)
159 KOG4307|consensus 96.4 0.0095 2.1E-07 54.3 6.7 74 94-167 433-514 (944)
160 KOG0128|consensus 96.2 0.00048 1E-08 63.6 -2.4 86 70-155 637-735 (881)
161 KOG0112|consensus 96.2 0.0011 2.3E-08 61.7 -0.2 74 93-166 370-450 (975)
162 KOG0415|consensus 96.2 0.0053 1.2E-07 51.6 3.5 62 18-83 237-318 (479)
163 KOG4660|consensus 96.1 0.0025 5.3E-08 56.4 1.5 148 14-168 70-251 (549)
164 KOG4676|consensus 96.1 0.00095 2.1E-08 56.6 -1.2 75 96-171 152-230 (479)
165 KOG0116|consensus 95.9 0.0037 8.1E-08 54.6 1.4 56 22-82 291-365 (419)
166 KOG4574|consensus 95.8 0.0055 1.2E-07 56.8 2.3 72 97-168 300-375 (1007)
167 KOG2253|consensus 95.7 0.0076 1.7E-07 54.5 2.8 72 91-163 36-107 (668)
168 KOG2135|consensus 95.6 0.0076 1.6E-07 52.5 2.3 70 96-166 373-445 (526)
169 KOG2591|consensus 95.6 0.045 9.7E-07 48.8 6.8 68 94-161 174-246 (684)
170 PF07576 BRAP2: BRCA1-associat 95.1 0.33 7.2E-06 34.5 9.0 62 95-156 13-81 (110)
171 KOG4285|consensus 94.3 0.1 2.2E-06 43.2 5.3 70 98-169 200-272 (350)
172 KOG0533|consensus 94.1 0.039 8.4E-07 44.8 2.5 64 17-84 81-162 (243)
173 PF11767 SET_assoc: Histone ly 93.6 0.55 1.2E-05 30.1 6.7 55 106-161 11-65 (66)
174 KOG0804|consensus 91.7 1.2 2.5E-05 39.1 8.2 62 95-156 74-142 (493)
175 KOG4661|consensus 90.9 0.14 3.1E-06 45.9 2.0 62 19-84 405-485 (940)
176 PF11608 Limkain-b1: Limkain b 89.8 0.31 6.6E-06 32.8 2.3 59 21-83 4-76 (90)
177 smart00361 RRM_1 RNA recogniti 89.5 0.4 8.7E-06 30.8 2.8 30 45-78 40-69 (70)
178 KOG4210|consensus 89.1 0.2 4.3E-06 41.9 1.3 75 94-168 87-169 (285)
179 PF07292 NID: Nmi/IFP 35 domai 87.7 1.2 2.6E-05 30.2 4.2 70 45-117 1-74 (88)
180 KOG2318|consensus 86.0 4.6 0.0001 36.7 8.0 71 93-163 172-304 (650)
181 KOG0151|consensus 82.3 1.4 3.1E-05 40.8 3.4 63 18-84 171-257 (877)
182 KOG4208|consensus 79.6 1.6 3.5E-05 34.3 2.4 58 22-83 52-129 (214)
183 PRK11634 ATP-dependent RNA hel 79.5 34 0.00075 32.0 11.5 69 96-166 487-562 (629)
184 KOG2891|consensus 74.6 1.6 3.5E-05 35.9 1.3 73 95-167 149-268 (445)
185 PF04059 RRM_2: RNA recognitio 73.9 3 6.6E-05 28.9 2.3 46 20-66 2-68 (97)
186 KOG4410|consensus 72.2 18 0.00038 30.2 6.6 45 96-140 331-378 (396)
187 KOG4019|consensus 71.5 3.9 8.4E-05 31.6 2.6 72 97-168 12-91 (193)
188 PTZ00009 heat shock 70 kDa pro 70.3 11 0.00023 35.5 5.8 27 199-225 622-648 (653)
189 PF15513 DUF4651: Domain of un 70.1 9 0.00019 24.1 3.5 18 110-127 9-26 (62)
190 KOG4209|consensus 68.7 6.9 0.00015 31.7 3.6 61 17-82 99-178 (231)
191 KOG4483|consensus 64.0 19 0.0004 31.5 5.4 53 96-148 392-446 (528)
192 PF08777 RRM_3: RNA binding mo 63.8 6.7 0.00015 27.5 2.4 28 22-49 4-33 (105)
193 KOG3152|consensus 62.5 2.1 4.5E-05 34.9 -0.5 25 20-44 75-99 (278)
194 KOG4008|consensus 62.2 4.8 0.0001 32.4 1.5 33 94-126 39-71 (261)
195 PF02714 DUF221: Domain of unk 61.4 9.2 0.0002 32.3 3.3 36 132-169 1-36 (325)
196 KOG2295|consensus 61.3 1.9 4E-05 38.9 -1.0 66 94-159 230-303 (648)
197 PF10567 Nab6_mRNP_bdg: RNA-re 59.1 16 0.00034 30.6 4.0 72 94-165 14-106 (309)
198 KOG4365|consensus 58.7 0.71 1.5E-05 40.3 -3.9 74 97-171 5-86 (572)
199 KOG0226|consensus 55.5 5.5 0.00012 32.5 0.8 65 13-81 184-267 (290)
200 COG0030 KsgA Dimethyladenosine 54.0 58 0.0013 26.9 6.6 70 45-124 54-124 (259)
201 CHL00123 rps6 ribosomal protei 53.2 63 0.0014 22.2 5.8 51 96-148 9-81 (97)
202 PF03468 XS: XS domain; Inter 50.8 20 0.00043 25.7 3.1 40 107-146 29-74 (116)
203 COG4371 Predicted membrane pro 48.2 34 0.00073 28.0 4.2 11 220-230 78-88 (334)
204 KOG1995|consensus 47.6 7.9 0.00017 33.1 0.6 65 16-84 63-154 (351)
205 PF11411 DNA_ligase_IV: DNA li 46.6 16 0.00034 20.3 1.5 17 105-121 19-35 (36)
206 PF00398 RrnaAD: Ribosomal RNA 45.4 1.2E+02 0.0026 24.8 7.3 84 33-123 31-127 (262)
207 KOG0862|consensus 45.4 13 0.00028 29.6 1.4 30 110-139 89-119 (216)
208 COG5175 MOT2 Transcriptional r 45.2 46 0.001 28.5 4.7 58 22-83 117-202 (480)
209 PF07292 NID: Nmi/IFP 35 domai 45.1 39 0.00085 22.9 3.6 33 132-165 1-35 (88)
210 KOG1855|consensus 43.8 9.9 0.00021 33.4 0.7 47 18-65 230-308 (484)
211 PF08675 RNA_bind: RNA binding 42.7 20 0.00044 24.1 1.9 41 22-63 11-62 (87)
212 KOG1295|consensus 42.5 41 0.00088 29.2 4.1 59 96-154 8-77 (376)
213 PRK10629 EnvZ/OmpR regulon mod 39.7 1.5E+02 0.0032 21.6 8.1 69 97-165 37-109 (127)
214 KOG0921|consensus 38.3 46 0.00099 32.6 4.1 11 220-230 1198-1208(1282)
215 PRK14548 50S ribosomal protein 38.2 1.2E+02 0.0027 20.3 5.5 51 98-148 23-80 (84)
216 PF08156 NOP5NT: NOP5NT (NUC12 37.6 10 0.00023 24.2 -0.1 39 110-150 27-65 (67)
217 PF14893 PNMA: PNMA 37.0 1.1E+02 0.0023 26.4 5.8 71 95-170 18-100 (331)
218 PF11823 DUF3343: Protein of u 36.7 42 0.00092 21.5 2.7 27 130-156 2-28 (73)
219 COG5638 Uncharacterized conser 36.7 1.6E+02 0.0035 26.0 6.8 72 93-164 144-295 (622)
220 TIGR02381 cspD cold shock doma 33.7 32 0.0007 21.9 1.7 48 119-167 3-56 (68)
221 cd04458 CSP_CDS Cold-Shock Pro 32.6 35 0.00076 21.2 1.8 20 119-138 2-21 (65)
222 PRK15464 cold shock-like prote 32.5 31 0.00067 22.2 1.5 48 119-167 6-59 (70)
223 PF00313 CSD: 'Cold-shock' DNA 31.9 34 0.00074 21.3 1.7 21 120-140 3-23 (66)
224 PF09902 DUF2129: Uncharacteri 31.6 1.2E+02 0.0025 19.7 4.0 37 115-152 16-52 (71)
225 PRK09937 stationary phase/star 31.4 38 0.00082 22.1 1.8 47 120-167 4-56 (74)
226 PRK09507 cspE cold shock prote 31.1 35 0.00076 21.8 1.6 20 119-138 5-24 (69)
227 PF14111 DUF4283: Domain of un 30.7 26 0.00057 25.7 1.1 56 110-166 36-91 (153)
228 PRK14998 cold shock-like prote 30.5 40 0.00087 21.9 1.8 48 119-167 3-56 (73)
229 TIGR03636 L23_arch archaeal ri 29.4 1.7E+02 0.0037 19.2 5.5 50 98-147 16-72 (77)
230 PRK10943 cold shock-like prote 29.3 39 0.00084 21.6 1.6 48 119-167 5-58 (69)
231 PRK15463 cold shock-like prote 29.2 39 0.00084 21.7 1.5 49 119-167 6-59 (70)
232 PF03439 Spt5-NGN: Early trans 29.1 1.1E+02 0.0024 20.3 3.8 34 121-154 33-69 (84)
233 KOG4849|consensus 28.8 37 0.0008 29.2 1.7 23 22-44 83-105 (498)
234 PRK09890 cold shock protein Cs 27.4 42 0.00091 21.5 1.5 20 119-138 6-25 (70)
235 smart00457 MACPF membrane-atta 27.1 1.3E+02 0.0027 23.4 4.4 22 100-121 30-51 (194)
236 PRK10354 RNA chaperone/anti-te 25.9 46 0.001 21.3 1.5 20 119-138 6-25 (70)
237 PRK02302 hypothetical protein; 24.8 1.7E+02 0.0037 19.9 4.1 48 97-152 11-58 (89)
238 PF08734 GYD: GYD domain; Int 23.8 2.4E+02 0.0051 19.0 6.0 43 109-151 22-69 (91)
239 PRK12450 foldase protein PrsA; 23.2 1.7E+02 0.0038 24.6 4.9 39 106-150 132-170 (309)
240 PF01782 RimM: RimM N-terminal 22.9 1.9E+02 0.004 18.8 4.1 33 121-154 46-78 (84)
241 PRK02886 hypothetical protein; 22.4 2E+02 0.0044 19.4 4.1 48 97-152 9-56 (87)
242 KOG0156|consensus 21.5 1.9E+02 0.0041 26.3 5.0 60 98-159 35-97 (489)
243 KOG4213|consensus 21.2 72 0.0016 24.8 1.9 62 96-163 112-183 (205)
244 cd07052 BMC_like_1_repeat2 Bac 21.1 2.6E+02 0.0057 18.5 4.6 28 121-148 45-73 (79)
245 KOG2187|consensus 20.8 46 0.001 30.2 0.9 42 129-170 63-104 (534)
246 PHA01632 hypothetical protein 20.6 99 0.0021 19.0 2.0 21 98-118 19-39 (64)
247 COG3102 Uncharacterized protei 20.2 1.2E+02 0.0026 23.4 2.8 68 103-170 47-154 (185)
No 1
>KOG0117|consensus
Probab=99.98 E-value=1e-31 Score=224.28 Aligned_cols=154 Identities=45% Similarity=0.722 Sum_probs=143.6
Q ss_pred eccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCce
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCD 75 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 75 (230)
..-++|||+|+|++.+++||.+-+++.+ +||+|+ +|.+|+.++++++++ .++++|+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe-~H~~Aa~aRrKl~~g-~~klwgn~ 239 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYE-SHRAAAMARRKLMPG-KIKLWGNA 239 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEee-cchhHHHHHhhccCC-ceeecCCc
Confidence 3446789999999999999998888765 999997 688999999999999 79999999
Q ss_pred eeeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEec
Q psy1188 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVA 155 (230)
Q Consensus 76 i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~ 155 (230)
+.|+||++...++.+.+..-+.|||+||+.++|+|.|+++|++||.|+.|+.+|+||||+|.+.++|.+|++.+||++|.
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceec
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeEEEEeCCCCchhh
Q psy1188 156 GSTLEVSLAKPPSDKKK 172 (230)
Q Consensus 156 g~~l~V~~a~~~~~~~~ 172 (230)
|.+|.|.+|+|..+++.
T Consensus 320 G~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 320 GSPIEVTLAKPVDKKKK 336 (506)
T ss_pred CceEEEEecCChhhhcc
Confidence 99999999999876643
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=7.6e-29 Score=220.52 Aligned_cols=151 Identities=42% Similarity=0.711 Sum_probs=134.7
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCcee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDI 76 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i 76 (230)
+-++|||+|||+++++++|.+.|+.++ +||+|. ++++|+.|.+.+.++ .+.++++.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~-s~edAa~AirkL~~g-ki~l~Gr~I 214 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYE-SHRAAAMARRKLMPG-RIQLWGHVI 214 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcC-CHHHHHHHHHHhhcc-ceEecCceE
Confidence 357899999999999999999988863 789997 466777777777666 578999999
Q ss_pred eeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcC--CCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEe
Q psy1188 77 IVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV 154 (230)
Q Consensus 77 ~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i 154 (230)
.|+|+.+....+.......++|||+||+.++|+++|+++|++| |+|++|.++++||||+|.+.++|++|+++||+..|
T Consensus 215 ~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i 294 (578)
T TIGR01648 215 AVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKEL 294 (578)
T ss_pred EEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEE
Confidence 9999998877666666667899999999999999999999999 99999999999999999999999999999999999
Q ss_pred cCcEeEEEEeCCCCch
Q psy1188 155 AGSTLEVSLAKPPSDK 170 (230)
Q Consensus 155 ~g~~l~V~~a~~~~~~ 170 (230)
.|++|+|+|++|...+
T Consensus 295 ~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 295 EGSEIEVTLAKPVDKK 310 (578)
T ss_pred CCEEEEEEEccCCCcc
Confidence 9999999999987654
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=9.6e-28 Score=203.49 Aligned_cols=143 Identities=22% Similarity=0.352 Sum_probs=120.5
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
.-++|||++||++++|++|+++|+.|| +||+|. +++.|..|...+. .+.+.+++|+|
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~-~~e~A~~Ai~~Ln---G~~l~gr~i~V 181 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFG-SEADSQRAIKNLN---GITVRNKRLKV 181 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEc-cHHHHHHHHHHcC---CCccCCceeee
Confidence 345789999999999999999999998 888886 4556665555543 34889999999
Q ss_pred ecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhC
Q psy1188 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~ln 150 (230)
.|+.+.... ....+|||+|||.++|+++|+++|++||.|+.|+|+ |+||||+|.+.++|++||+.||
T Consensus 182 ~~a~p~~~~-----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 182 SYARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred ecccccccc-----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 998764332 134579999999999999999999999999999988 3699999999999999999999
Q ss_pred CcEecC--cEeEEEEeCCCCc
Q psy1188 151 GQTVAG--STLEVSLAKPPSD 169 (230)
Q Consensus 151 g~~i~g--~~l~V~~a~~~~~ 169 (230)
+..+.+ ++|+|.+++....
T Consensus 257 g~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 257 NVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCccCCCceeEEEEECCcccc
Confidence 998866 7999999996543
No 4
>KOG0109|consensus
Probab=99.93 E-value=1.1e-26 Score=185.00 Aligned_cols=143 Identities=27% Similarity=0.440 Sum_probs=124.8
Q ss_pred cceeEeecCccccccccccccccCCcceEEecchHHH-------HHHhhhhhcCCCeeeeeCceeeeecCCCCCCCCccC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYTKLLEYGLDKRI-------AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTET 91 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g~fv~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~~~~~ 91 (230)
+.++||+|||+++++.+|+.||++||+++||++.++. ..++..++.|..+.+|+|..|+|+-++++..
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk----- 76 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK----- 76 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-----
Confidence 5689999999999999999999999988888743322 2344445555567799999999998877744
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
.+.+|+|+||.+.|+.++|+..|++||+|.+|+|+|+|+||.|+-.++|..|++.|||.++.|++++|.++..+-
T Consensus 77 --~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 77 --ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred --CccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 356799999999999999999999999999999999999999999999999999999999999999999998553
No 5
>KOG0144|consensus
Probab=99.93 E-value=1.1e-25 Score=187.57 Aligned_cols=150 Identities=27% Similarity=0.429 Sum_probs=129.1
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
...-|+||+.+|+.++|.||+++|++|| .||.|. ..+.|.+|..++.+.+.+.-...+|.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~-trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYY-TRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEec-cHHHHHHHHHHhhcccccCCCCccee
Confidence 3445789999999999999999999999 788886 46778888888888875555567889
Q ss_pred eecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhC
Q psy1188 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 78 v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~ln 150 (230)
|++++.....- ...++||||-|+..+||.+++++|++||.|++|.|+ ||||||+|++.|-|..||++||
T Consensus 111 vk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 111 VKYADGERERI----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred ecccchhhhcc----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhc
Confidence 99997655432 235679999999999999999999999999999988 5699999999999999999999
Q ss_pred Cc-EecCc--EeEEEEeCCCCchh
Q psy1188 151 GQ-TVAGS--TLEVSLAKPPSDKK 171 (230)
Q Consensus 151 g~-~i~g~--~l~V~~a~~~~~~~ 171 (230)
|. ++.|+ +|.|+||.++++|.
T Consensus 187 g~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred cceeeccCCCceEEEecccCCCch
Confidence 98 77774 99999999987764
No 6
>KOG0148|consensus
Probab=99.93 E-value=1.1e-24 Score=171.96 Aligned_cols=148 Identities=20% Similarity=0.355 Sum_probs=125.8
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
--.+||+.|+.+++-++|++.|..|| .||+|. .+..|+.|...+ +++ -|.+|.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~-~k~dAEnAI~~M-nGq--WlG~R~IRTN 137 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFP-NKEDAENAIQQM-NGQ--WLGRRTIRTN 137 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEecc-chHHHHHHHHHh-CCe--eeccceeecc
Confidence 44579999999999999999999999 899996 455555554443 443 9999999999
Q ss_pred cCCCCCCCC-----------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHH
Q psy1188 80 WADPQEEPD-----------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAM 146 (230)
Q Consensus 80 ~a~~~~~~~-----------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai 146 (230)
|+..+.... .......++|||||++..+||++|++.|+.||.|.+|++. +||+||.|++.|+|.+||
T Consensus 138 WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 138 WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAI 217 (321)
T ss_pred ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHH
Confidence 997654221 2344567899999999999999999999999999999999 579999999999999999
Q ss_pred HHhCCcEecCcEeEEEEeCCCCch
Q psy1188 147 NELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 147 ~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
.+|||.+|+|+.++|.|.+....-
T Consensus 218 v~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 218 VQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred HHhcCceeCceEEEEeccccCCCC
Confidence 999999999999999999976554
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=5.9e-24 Score=192.71 Aligned_cols=150 Identities=23% Similarity=0.372 Sum_probs=123.5
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeee----Cce
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSR----GCD 75 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 75 (230)
+...+||+|||.++++++|+++|..|| +||+|.. .+.|..|.+.+... .+. ++.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~-~e~A~~Av~~l~g~---~i~~~~~g~~ 252 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEK-HEDAAKAVEEMNGK---KIGLAKEGKK 252 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECC-HHHHHHHHHHhCCc---Eeccccccee
Confidence 345689999999999999999999998 6889974 55565555554332 666 899
Q ss_pred eeeecCCCCCCCC-------------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEE
Q psy1188 76 IIVDWADPQEEPD-------------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVH 135 (230)
Q Consensus 76 i~v~~a~~~~~~~-------------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~ 135 (230)
+.|.++..+.... ........+|||+||++++|+++|+++|+.||.|.+|+++ +|||||+
T Consensus 253 l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~ 332 (562)
T TIGR01628 253 LYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVC 332 (562)
T ss_pred eEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEE
Confidence 9998886553321 1112345789999999999999999999999999999987 5799999
Q ss_pred ecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCchh
Q psy1188 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171 (230)
Q Consensus 136 F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~~ 171 (230)
|.+.++|.+|+.+|||..++|++|.|.+|..+..+.
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHH
Confidence 999999999999999999999999999999765543
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.4e-24 Score=193.67 Aligned_cols=147 Identities=19% Similarity=0.294 Sum_probs=122.1
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
-.++|||+||++++++++|+++|..|| +||+|.+ .+.|..|.+.+ + +..+.|+.|+|
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s-~e~A~~Ai~~l-n--G~~i~GR~IkV 181 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEV-PEAAQLALEQM-N--GQMLGGRNIKV 181 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCc-HHHHHHHHHhc-C--CeEEecceeee
Confidence 356899999999999999999999998 8999974 55666655554 3 34899999999
Q ss_pred ecCCCCCCCC------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHH
Q psy1188 79 DWADPQEEPD------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT 144 (230)
Q Consensus 79 ~~a~~~~~~~------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~ 144 (230)
.+........ ........+|||+|||+++++++|+++|+.||.|.+|++. ||||||+|.+.++|.+
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 8764332111 1112245789999999999999999999999999999987 5799999999999999
Q ss_pred HHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 145 AMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 145 Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
||+.||+..|+|+.|+|.++.++.
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999999999644
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=3e-24 Score=184.06 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=118.2
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
...++||+|||..+++++|.++|+.|| +||+|.+ .+.|..+.+.+.+. .+.-...++.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~-~~~A~~ai~~l~g~-~~~g~~~~i~v 165 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDK-RDEADRAIKTLNGT-TPSGCTEPITV 165 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECC-HHHHHHHHHHhCCC-ccCCCceeEEE
Confidence 345799999999999999999999987 7888874 55666666655443 33333467888
Q ss_pred ecCCCCCCCCc---------------------------------------------------------------------
Q psy1188 79 DWADPQEEPDT--------------------------------------------------------------------- 89 (230)
Q Consensus 79 ~~a~~~~~~~~--------------------------------------------------------------------- 89 (230)
.|+........
T Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
T TIGR01661 166 KFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRAS 245 (352)
T ss_pred EECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCC
Confidence 88753321000
Q ss_pred ------------------cCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHH
Q psy1188 90 ------------------ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAI 143 (230)
Q Consensus 90 ------------------~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~ 143 (230)
.....+.+|||+|||+++++++|+++|++||.|.+|+|+ ||||||+|.+.++|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 246 PPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred CccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 001123369999999999999999999999999999987 679999999999999
Q ss_pred HHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 144 TAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 144 ~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
+|+.+|||..|+||+|+|.|+.++.
T Consensus 326 ~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 326 MAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999999998764
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.90 E-value=7.1e-23 Score=175.52 Aligned_cols=143 Identities=23% Similarity=0.343 Sum_probs=120.5
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..+|||+|||.+++|++|+++|+.|| +||+|.. .+.|..|.+.+ ++..+.|+.|.|.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~-~~~A~~Ai~~l---~g~~l~g~~i~v~ 78 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVR-PEDAEKAVNSL---NGLRLQNKTIKVS 78 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECc-HHHHHHHHhhc---ccEEECCeeEEEE
Confidence 35789999999999999999999999 7888864 44555555443 3358999999999
Q ss_pred cCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCC
Q psy1188 80 WADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNG 151 (230)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng 151 (230)
|+.+.... ....+|||+|||.++++++|+++|++||.|..++++ +|||||+|.+.++|++|++.|||
T Consensus 79 ~a~~~~~~-----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 79 YARPSSDS-----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eecccccc-----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 99765432 234579999999999999999999999999999886 46999999999999999999999
Q ss_pred cEecC--cEeEEEEeCCCCch
Q psy1188 152 QTVAG--STLEVSLAKPPSDK 170 (230)
Q Consensus 152 ~~i~g--~~l~V~~a~~~~~~ 170 (230)
..+.| ++|.|.|+.....+
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~ 174 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSS 174 (352)
T ss_pred CccCCCceeEEEEECCCCCcC
Confidence 99887 68999999876544
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=3.8e-23 Score=183.83 Aligned_cols=146 Identities=23% Similarity=0.265 Sum_probs=119.7
Q ss_pred eeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCC
Q psy1188 21 KFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEP 87 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~ 87 (230)
.|||+|||++++|++|+++|+.|| +||+|++ .+.|..|...+.. +++.+.|+.|.|.|+......
T Consensus 4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~-~e~A~~Ai~~~~~-~~~~l~g~~l~v~~s~~~~~~ 81 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFED-EESAKACVNFATS-VPIYIRGQPAFFNYSTSQEIK 81 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCc-hHHHHHHHHHhhc-CCceEcCeEEEEEecCCcccc
Confidence 469999999999999999999999 8999974 5566666654422 256899999999998754321
Q ss_pred Ccc-------CCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec----CEEEEEecCHHHHHHHHHHhCCcEecC
Q psy1188 88 DTE-------TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK----DYAFVHFEDRQEAITAMNELNGQTVAG 156 (230)
Q Consensus 88 ~~~-------~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r----g~aFV~F~~~e~A~~Ai~~lng~~i~g 156 (230)
... ......+|||+||++++|+++|+++|+.||.|.+|.+.+ ++|||+|.+.++|.+|++.|||..|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~ 161 (481)
T TIGR01649 82 RDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYN 161 (481)
T ss_pred cCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 111 112335799999999999999999999999999999883 489999999999999999999999964
Q ss_pred --cEeEEEEeCCCC
Q psy1188 157 --STLEVSLAKPPS 168 (230)
Q Consensus 157 --~~l~V~~a~~~~ 168 (230)
++|+|.|+++..
T Consensus 162 ~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 162 GCCTLKIEYAKPTR 175 (481)
T ss_pred CceEEEEEEecCCC
Confidence 589999999744
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=1.7e-22 Score=183.20 Aligned_cols=164 Identities=21% Similarity=0.375 Sum_probs=135.4
Q ss_pred eeeeecccccEEEEeccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhc
Q psy1188 3 IQASIKNQKPIVIFVNVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFK 64 (230)
Q Consensus 3 ~~~~~~~~~~~~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~ 64 (230)
|+|.+.+.++........+|||+|||.++++++|+++|+.|| +||+|.+ .+.|..|.+.+.
T Consensus 72 i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~-~e~A~~Ai~~ln 150 (562)
T TIGR01628 72 IRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEK-EESAKAAIQKVN 150 (562)
T ss_pred EEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECC-HHHHHHHHHHhc
Confidence 677777777776667777899999999999999999999998 6888874 555655555543
Q ss_pred CCCeeeeeCceeeeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEec
Q psy1188 65 TGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFE 137 (230)
Q Consensus 65 ~~~~~~~~~~~i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~ 137 (230)
+..++++.+.+.+..+............++|||+|||.++|+++|+++|+.||.|.++.+. +|||||+|.
T Consensus 151 ---g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~ 227 (562)
T TIGR01628 151 ---GMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFE 227 (562)
T ss_pred ---ccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEEC
Confidence 3488999999987655443322233455789999999999999999999999999999987 469999999
Q ss_pred CHHHHHHHHHHhCCcEec----CcEeEEEEeCCCCch
Q psy1188 138 DRQEAITAMNELNGQTVA----GSTLEVSLAKPPSDK 170 (230)
Q Consensus 138 ~~e~A~~Ai~~lng~~i~----g~~l~V~~a~~~~~~ 170 (230)
+.++|.+|++.|||..|. |+.|.|.++..+.++
T Consensus 228 ~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 228 KHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred CHHHHHHHHHHhCCcEecccccceeeEeecccChhhh
Confidence 999999999999999999 999999999876655
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=2.6e-22 Score=177.72 Aligned_cols=145 Identities=26% Similarity=0.363 Sum_probs=119.3
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||..+++++|+++|++|| +||+|.. .+.|.+|..+ ++ ..+.|+.|.|
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~-~e~A~~Al~l--~g--~~~~g~~i~v 162 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYD-VESVIKALAL--TG--QMLLGRPIIV 162 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECC-HHHHHHHHHh--CC--CEECCeeeEE
Confidence 356799999999999999999999997 7999975 5555555543 33 4888999999
Q ss_pred ecCCCCCCCC-------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHH
Q psy1188 79 DWADPQEEPD-------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAI 143 (230)
Q Consensus 79 ~~a~~~~~~~-------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~ 143 (230)
.++....... ........+|||+|||.++|+++|+++|+.||.|..|.++ +|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 8764332111 1111235789999999999999999999999999999988 479999999999999
Q ss_pred HHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 144 TAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 144 ~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
+|++.|||..|.|++|+|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999998743
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.88 E-value=7.9e-22 Score=175.39 Aligned_cols=144 Identities=18% Similarity=0.156 Sum_probs=118.4
Q ss_pred ceeEeecCcc-ccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 20 RKFTMAESSR-EAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 20 ~~~~v~~l~~-~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
..|||+||++ .+++++|+++|+.|| +||+|.. ...|..|...+.+. .+.|+.|+|.+++..
T Consensus 276 ~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~-~~~A~~Ai~~lng~---~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 276 SVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMAD-PYQAQLALTHLNGV---KLFGKPLRVCPSKQQ 351 (481)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECC-HHHHHHHHHHhCCC---EECCceEEEEEcccc
Confidence 4679999998 699999999999999 8899974 55666666555443 889999999987543
Q ss_pred CCCCc--------------------------------cCCCCccEEEEecCCCCCCHHHHHHHhhcCCC--eEEEEEe--
Q psy1188 85 EEPDT--------------------------------ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRI-- 128 (230)
Q Consensus 85 ~~~~~--------------------------------~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~--i~~~~i~-- 128 (230)
..... ....++.+|||+|||.++|+++|+++|+.||. |..+++.
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 11000 00134678999999999999999999999998 8888876
Q ss_pred ----cCEEEEEecCHHHHHHHHHHhCCcEecCcE------eEEEEeCCC
Q psy1188 129 ----KDYAFVHFEDRQEAITAMNELNGQTVAGST------LEVSLAKPP 167 (230)
Q Consensus 129 ----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~------l~V~~a~~~ 167 (230)
+++|||+|.+.++|.+||..||+..|.|+. |+|+||+++
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 479999999999999999999999999985 999999865
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=9.4e-22 Score=176.37 Aligned_cols=145 Identities=21% Similarity=0.284 Sum_probs=116.2
Q ss_pred ccceeEeecCccccccccccccccCC-------------------------cceEEecchHHHHHHhhhhhcCCCeeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDY-------------------------TKLLEYGLDKRIAGKLDDIFKTGKHLLSR 72 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~-------------------------g~fv~~~~~~~~a~~~~~~~~~~~~~~~~ 72 (230)
..++|||+|||+++++++|.++|.++ .+||+|.+ .+.|..|.. ++ ++.+.
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~-~e~A~~Al~--l~--g~~~~ 248 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRT-VEEATFAMA--LD--SIIYS 248 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCC-HHHHhhhhc--CC--CeEee
Confidence 45789999999999999999999864 28999985 445555543 23 45888
Q ss_pred CceeeeecCCCCCCC------------C------------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe
Q psy1188 73 GCDIIVDWADPQEEP------------D------------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 128 (230)
Q Consensus 73 ~~~i~v~~a~~~~~~------------~------------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~ 128 (230)
|+.|.|.+....... . ........+|||+|||..+|+++|+++|+.||.|..+.++
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 999888754321100 0 0011234789999999999999999999999999999886
Q ss_pred --------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 129 --------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 129 --------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
+|||||+|.+.++|..||+.|||..|.|++|.|.++...
T Consensus 329 ~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 329 KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 579999999999999999999999999999999999754
No 16
>KOG0127|consensus
Probab=99.83 E-value=3.3e-20 Score=159.00 Aligned_cols=149 Identities=18% Similarity=0.276 Sum_probs=121.9
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..+|||++||+.++...|.++|+.+| .||.|...++.-.++... +.-+++|+.|+|.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~----~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAET----EQSKFEGRILNVD 80 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHh----hcCcccceecccc
Confidence 36899999999999999999999987 788886433333333333 3338999999999
Q ss_pred cCCCCCCCCc---------------------cCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCE
Q psy1188 80 WADPQEEPDT---------------------ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDY 131 (230)
Q Consensus 80 ~a~~~~~~~~---------------------~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~ 131 (230)
.+.+...+.. ....+..+|.|+|||+.|.+.+|+.+|+.||.|..|.|+ +||
T Consensus 81 ~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGF 160 (678)
T KOG0127|consen 81 PAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGF 160 (678)
T ss_pred cccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccce
Confidence 9866533220 011235679999999999999999999999999999998 479
Q ss_pred EEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCchh
Q psy1188 132 AFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171 (230)
Q Consensus 132 aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~~ 171 (230)
|||+|.+..+|.+|++.+|+..|.||+|-|.||.++..-.
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 9999999999999999999999999999999999876543
No 17
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=3e-19 Score=133.82 Aligned_cols=75 Identities=27% Similarity=0.515 Sum_probs=70.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
...++|||+|||+++|+++|+++|++||.|.+|.++ ++||||+|.+.++|++|++.||+..|+|++|+|+|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 346689999999999999999999999999999987 579999999999999999999999999999999999
Q ss_pred CCC
Q psy1188 165 KPP 167 (230)
Q Consensus 165 ~~~ 167 (230)
.++
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 854
No 18
>KOG0148|consensus
Probab=99.83 E-value=1.1e-20 Score=149.41 Aligned_cols=132 Identities=23% Similarity=0.348 Sum_probs=114.1
Q ss_pred eccceeEeecCccccccccccccccCCcceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCCCccCCCCcc
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVK 96 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~~~~~~~~~~ 96 (230)
..|++|||+||...+||+-|..||.+-|....|....+ .+.|.|+.............+.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------e~~v~wa~~p~nQsk~t~~~hf 63 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------ELKVNWATAPGNQSKPTSNQHF 63 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------hhccccccCcccCCCCccccce
Confidence 46899999999999999999999999998888865333 3446676655444444445577
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
.+||+.|.+.++-++|++.|.+||+|.+++|+ ||||||.|-+.++|++||.+|||.-|++|.|+..||..+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 89999999999999999999999999999998 4699999999999999999999999999999999998654
No 19
>KOG0145|consensus
Probab=99.82 E-value=7.9e-20 Score=144.01 Aligned_cols=142 Identities=24% Similarity=0.368 Sum_probs=120.2
Q ss_pred eeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 21 KFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
.++|.-||..+|++|+++||..-| .||.|. +.+.|++|...+ +++.+..+.|+|.|+
T Consensus 43 NLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv-~p~DAe~Aintl---NGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYV-RPKDAEKAINTL---NGLRLQNKTIKVSYA 118 (360)
T ss_pred eeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeec-ChHHHHHHHhhh---cceeeccceEEEEec
Confidence 468889999999999999999877 688885 455555555544 456999999999999
Q ss_pred CCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcE
Q psy1188 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQT 153 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~ 153 (230)
+|....- ...+|||.+||..+|..+|+++|++||.|...+|+ ||.|||.|+..++|+.||..|||..
T Consensus 119 RPSs~~I-----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 119 RPSSDSI-----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred cCChhhh-----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 9876643 34579999999999999999999999999887765 8899999999999999999999998
Q ss_pred ecC--cEeEEEEeCCCCchh
Q psy1188 154 VAG--STLEVSLAKPPSDKK 171 (230)
Q Consensus 154 i~g--~~l~V~~a~~~~~~~ 171 (230)
-.| .+|.|+||...+.+.
T Consensus 194 P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred CCCCCCCeEEEecCCccccc
Confidence 877 489999999776553
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.81 E-value=2.9e-19 Score=160.28 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=115.1
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+.+++++|.++|+.|| +||+|. +...|..|...+.+ +.+.++.|.|
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~-~~~~a~~A~~~l~g---~~~~~~~l~v 369 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYK-DPSVTDVAIAALNG---KDTGDNKLHV 369 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEEC-CHHHHHHHHHHcCC---CEECCeEEEE
Confidence 357899999999999999999999998 889996 45566666655433 4889999999
Q ss_pred ecCCCCCCCC-----c------------------cCCCCccEEEEecCCCC--C--------CHHHHHHHhhcCCCeEEE
Q psy1188 79 DWADPQEEPD-----T------------------ETMSKVKVLYVRNLTQY--C--------TEEKLKEAFEQYGRVERV 125 (230)
Q Consensus 79 ~~a~~~~~~~-----~------------------~~~~~~~~lfV~nL~~~--~--------te~~L~~~F~~~G~i~~~ 125 (230)
.++....... . ....++.+|+|.||... + ..++|+++|++||.|..|
T Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v 449 (509)
T TIGR01642 370 QRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINI 449 (509)
T ss_pred EECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEE
Confidence 9975322110 0 01125678999999532 1 136799999999999999
Q ss_pred EEec-----------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 126 KRIK-----------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 126 ~i~r-----------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
.|++ |++||+|.+.++|++|+.+|||..|+|+.|.|.|...
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9873 6899999999999999999999999999999999873
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.79 E-value=5.9e-19 Score=157.55 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=108.8
Q ss_pred cceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeee-eCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLS-RGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~-~~~~i~v~ 79 (230)
..+|||+|||++++|++|+++|++|| +||+|. +.+.|+.|.+.+.+. .+ .++.+.|.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~-~~e~A~~Ai~~lng~---~i~~Gr~l~V~ 133 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFC-GKEEAKEAVKLLNNY---EIRPGRLLGVC 133 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeC-CHHHHHHHHHHcCCC---eecCCcccccc
Confidence 46899999999999999999999999 888886 466666666665443 44 36666676
Q ss_pred cCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEe---------cCEEEEEecCHHHHHHHHHHh
Q psy1188 80 WADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGR-VERVKRI---------KDYAFVHFEDRQEAITAMNEL 149 (230)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~-i~~~~i~---------rg~aFV~F~~~e~A~~Ai~~l 149 (230)
++. ..++|||+|||.++|+++|.+.|++++. +..+.+. ++||||+|.++++|.+|++.|
T Consensus 134 ~S~-----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL 202 (578)
T TIGR01648 134 ISV-----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKL 202 (578)
T ss_pred ccc-----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHh
Confidence 542 2457999999999999999999999864 4444332 679999999999999999988
Q ss_pred CCc--EecCcEeEEEEeCCCC
Q psy1188 150 NGQ--TVAGSTLEVSLAKPPS 168 (230)
Q Consensus 150 ng~--~i~g~~l~V~~a~~~~ 168 (230)
+.. .+.|+.|.|+|+.+..
T Consensus 203 ~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 203 MPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred hccceEecCceEEEEeecccc
Confidence 643 6899999999999764
No 22
>KOG0127|consensus
Probab=99.78 E-value=1.9e-18 Score=148.29 Aligned_cols=148 Identities=25% Similarity=0.400 Sum_probs=116.4
Q ss_pred cceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
--+|+|+||||.+.+.+|..+|+.|| +||.|. ....|..+.+.+.. ..|+|++|-|+|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk-~~~dA~~Al~~~N~---~~i~gR~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFK-EKKDAEKALEFFNG---NKIDGRPVAVDW 192 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEe-eHHHHHHHHHhccC---ceecCceeEEee
Confidence 44689999999999999999999999 666664 34445555555433 499999999999
Q ss_pred CCCCCCC-------------------------C-----------------c-----------------------------
Q psy1188 81 ADPQEEP-------------------------D-----------------T----------------------------- 89 (230)
Q Consensus 81 a~~~~~~-------------------------~-----------------~----------------------------- 89 (230)
|-++..- + +
T Consensus 193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 8221000 0 0
Q ss_pred --------------cCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHH
Q psy1188 90 --------------ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMN 147 (230)
Q Consensus 90 --------------~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~ 147 (230)
.......+|||+|||+++|+++|.++|++||+|.++.++ +|.|||.|.+..+|.+||+
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 000122789999999999999999999999999999887 5799999999999999998
Q ss_pred Hh-----CC-cEecCcEeEEEEeCCCCch
Q psy1188 148 EL-----NG-QTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 148 ~l-----ng-~~i~g~~l~V~~a~~~~~~ 170 (230)
.. .| ..|.||.|+|..|.++.+-
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHH
Confidence 76 34 5789999999999987554
No 23
>KOG0145|consensus
Probab=99.77 E-value=4.1e-18 Score=134.38 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=117.3
Q ss_pred ceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
..+||..||+.+|.+|+..+|.+|| .|+.|+ ....|+.|.+.+... .-.-...+|.|+|
T Consensus 128 aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFD-Kr~EAe~AIk~lNG~-~P~g~tepItVKF 205 (360)
T KOG0145|consen 128 ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFD-KRIEAEEAIKGLNGQ-KPSGCTEPITVKF 205 (360)
T ss_pred cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEec-chhHHHHHHHhccCC-CCCCCCCCeEEEe
Confidence 4579999999999999999999999 899996 455666666665443 2233345788888
Q ss_pred CCCCCCCCc----------------------------------------------------------cCCCCccEEEEec
Q psy1188 81 ADPQEEPDT----------------------------------------------------------ETMSKVKVLYVRN 102 (230)
Q Consensus 81 a~~~~~~~~----------------------------------------------------------~~~~~~~~lfV~n 102 (230)
+........ ........|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 754321110 0012346799999
Q ss_pred CCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 103 LTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 103 L~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
|.++.+|.-|+++|+.||-|.+|+|+ ||||||++.+.++|..||..|||..+++|.|.|.|...+
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999998 469999999999999999999999999999999997644
No 24
>KOG0131|consensus
Probab=99.76 E-value=9.3e-19 Score=131.20 Aligned_cols=146 Identities=19% Similarity=0.230 Sum_probs=118.9
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
+-.++|++||+..++++-|.++|-+.| +|+||. .++.|+-+.+.+. .+++.|++|+|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~-~eedadYAikiln---~VkLYgrpIrv 83 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFR-TEEDADYAIKILN---MVKLYGRPIRV 83 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEe-chhhhHHHHHHHH---HHHhcCceeEE
Confidence 345678888888888888888888876 899997 4667777777765 35999999999
Q ss_pred ecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEE-EEe--------cCEEEEEecCHHHHHHHHHHh
Q psy1188 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-KRI--------KDYAFVHFEDRQEAITAMNEL 149 (230)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~-~i~--------rg~aFV~F~~~e~A~~Ai~~l 149 (230)
..+...... ..-+.+|||+||.+.++|..|.+.|+.||.+... .++ ++||||.|.+.|.+.+|+..|
T Consensus 84 ~kas~~~~n----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 84 NKASAHQKN----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred Eeccccccc----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 988622221 2234689999999999999999999999998663 233 569999999999999999999
Q ss_pred CCcEecCcEeEEEEeCCCCchh
Q psy1188 150 NGQTVAGSTLEVSLAKPPSDKK 171 (230)
Q Consensus 150 ng~~i~g~~l~V~~a~~~~~~~ 171 (230)
||..+..++|.|.++..+..+.
T Consensus 160 ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999776654
No 25
>KOG0117|consensus
Probab=99.74 E-value=2.3e-17 Score=138.67 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=113.7
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
=+.+||+.||+++.|+||+.+|+.-| +||.|. .++.|..|.+.+.+- .|. .|+.|.|+
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~-~Ke~Aq~Aik~lnn~-Eir-~GK~igvc 159 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFC-TKEEAQEAIKELNNY-EIR-PGKLLGVC 159 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEee-cHHHHHHHHHHhhCc-ccc-CCCEeEEE
Confidence 46789999999999999999999877 999996 566777777776665 222 68888887
Q ss_pred cCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEe---------cCEEEEEecCHHHHHHHHHHh
Q psy1188 80 WADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGR-VERVKRI---------KDYAFVHFEDRQEAITAMNEL 149 (230)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~-i~~~~i~---------rg~aFV~F~~~e~A~~Ai~~l 149 (230)
.+. ..++|||||||.+.++++|.+.|++.++ |+.|-+. ||||||+|.|+..|.-|.+.|
T Consensus 160 ~Sv-----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 160 VSV-----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred Eee-----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 652 3457999999999999999999999986 5555444 789999999999999998765
Q ss_pred C-Cc-EecCcEeEEEEeCCCCchh
Q psy1188 150 N-GQ-TVAGSTLEVSLAKPPSDKK 171 (230)
Q Consensus 150 n-g~-~i~g~~l~V~~a~~~~~~~ 171 (230)
- ++ .+.|+.+.|+||.|..+-.
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~d 252 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPD 252 (506)
T ss_pred cCCceeecCCcceeeccCcccCCC
Confidence 4 44 7789999999999987654
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.73 E-value=5.9e-17 Score=143.62 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=114.3
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..+|||+|||..+++++|.++|+.|| +||+|.. ...|..|...+.+ ..+.|+.|.|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~-~e~A~~A~~~l~g---~~i~g~~i~v~ 261 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHD-AEEAKEALEVMNG---FELAGRPIKVG 261 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC-HHHHHHHHHhcCC---cEECCEEEEEE
Confidence 47899999999999999999999998 6889974 5556655555433 58899999999
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q psy1188 80 WADPQEEP------------------------------------------------------------------------ 87 (230)
Q Consensus 80 ~a~~~~~~------------------------------------------------------------------------ 87 (230)
|+......
T Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (457)
T TIGR01622 262 YAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYAT 341 (457)
T ss_pred EccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccc
Confidence 95321000
Q ss_pred -------------CccCCCCccEEEEecCCCCCC----------HHHHHHHhhcCCCeEEEEEe----cCEEEEEecCHH
Q psy1188 88 -------------DTETMSKVKVLYVRNLTQYCT----------EEKLKEAFEQYGRVERVKRI----KDYAFVHFEDRQ 140 (230)
Q Consensus 88 -------------~~~~~~~~~~lfV~nL~~~~t----------e~~L~~~F~~~G~i~~~~i~----rg~aFV~F~~~e 140 (230)
......+..+|+|.||-...+ .+||++.|++||.|+.|.+. .|++||+|.+.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 342 GALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVD 421 (457)
T ss_pred cccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHH
Confidence 000113457799999954433 36899999999999999987 579999999999
Q ss_pred HHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 141 EAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 141 ~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
+|.+|++.|||..++|+.|.|.+...
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 99999999999999999999999873
No 27
>KOG0124|consensus
Probab=99.72 E-value=1.7e-17 Score=136.47 Aligned_cols=145 Identities=20% Similarity=0.324 Sum_probs=119.2
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
.+++||+.++++..|+-|+..|..|| +||||+..+ +|.-+.+.+ |+ ..+.|+.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPE-aAqLAlEqM-Ng--~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPE-AAQLALEQM-NG--QMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcH-HHHHHHHHh-cc--ccccCcccccc
Confidence 47899999999999999999999999 999998644 444333333 33 38899999998
Q ss_pred cCCCCCCCCc------cCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHH
Q psy1188 80 WADPQEEPDT------ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITA 145 (230)
Q Consensus 80 ~a~~~~~~~~------~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~A 145 (230)
...+-....+ .......+|||..+.++.+|+||+.+|+-||+|.+|.+- ||||||+|.+..+...|
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 6543322211 122345789999999999999999999999999999987 57999999999999999
Q ss_pred HHHhCCcEecCcEeEEEEeCCC
Q psy1188 146 MNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 146 i~~lng~~i~g~~l~V~~a~~~ 167 (230)
|..||-..++|.-|+|..+...
T Consensus 269 iasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 269 IASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred hhhcchhhcccceEecccccCC
Confidence 9999999999999999988754
No 28
>KOG0123|consensus
Probab=99.72 E-value=3.4e-17 Score=139.97 Aligned_cols=134 Identities=19% Similarity=0.366 Sum_probs=113.3
Q ss_pred eEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC
Q psy1188 22 FTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 22 ~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~ 85 (230)
+||+ +++||..|.++|+.+| ++++|.. ...|+.|.+.++.. .+.|+++++.|+....
T Consensus 4 l~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~-~~da~~A~~~~n~~---~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 4 LYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQ-PADAERALDTMNFD---VLKGKPIRIMWSQRDP 76 (369)
T ss_pred eecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCC-HHHHHHHHHHcCCc---ccCCcEEEeehhccCC
Confidence 5666 8899999999999988 5677753 45555555555444 8999999999986544
Q ss_pred CCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcEecCcEe
Q psy1188 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQTVAGSTL 159 (230)
Q Consensus 86 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l 159 (230)
.. |||.||++++|..+|.++|+.||.|.+|++. +|| ||+|+++++|.+|++.|||..+.|++|
T Consensus 77 ~~----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki 145 (369)
T KOG0123|consen 77 SL----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKI 145 (369)
T ss_pred ce----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCee
Confidence 32 9999999999999999999999999999988 568 999999999999999999999999999
Q ss_pred EEEEeCCCCchhhH
Q psy1188 160 EVSLAKPPSDKKKK 173 (230)
Q Consensus 160 ~V~~a~~~~~~~~~ 173 (230)
.|.....+.++...
T Consensus 146 ~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 146 YVGLFERKEEREAP 159 (369)
T ss_pred EEeeccchhhhccc
Confidence 99999977665433
No 29
>KOG0110|consensus
Probab=99.72 E-value=2.1e-17 Score=145.80 Aligned_cols=149 Identities=15% Similarity=0.238 Sum_probs=123.1
Q ss_pred eccceeEeecCccccccccccccccCCc----------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCc
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT----------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGC 74 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g----------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~ 74 (230)
.+..++|+.||.++++.+++..+|..+| +||+|.. ...|..+.+.+. ...|+|+
T Consensus 513 ~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~-~e~A~~a~k~lq---gtvldGH 588 (725)
T KOG0110|consen 513 ETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAK-PESAQAALKALQ---GTVLDGH 588 (725)
T ss_pred ccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecC-HHHHHHHHHHhc---CceecCc
Confidence 4455599999999999999999999988 7888864 555666666654 3489999
Q ss_pred eeeeecCCCCCCC----CccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHH
Q psy1188 75 DIIVDWADPQEEP----DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEA 142 (230)
Q Consensus 75 ~i~v~~a~~~~~~----~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A 142 (230)
.|.+.++...... .......+.+|+|.|||+..+..+++++|+.||.|.+|+|+ ||||||+|-+..+|
T Consensus 589 ~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 589 KLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred eEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 9999998722111 11112235789999999999999999999999999999988 67999999999999
Q ss_pred HHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 143 ITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 143 ~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
.+|+++|..+.+.||+|.++||+....
T Consensus 669 ~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 669 KNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHhhcccceechhhheehhccchH
Confidence 999999999999999999999996644
No 30
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=6.2e-17 Score=106.17 Aligned_cols=63 Identities=43% Similarity=0.806 Sum_probs=60.0
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeEEEEEec-------CEEEEEecCHHHHHHHHHHhCCcEecCcEeE
Q psy1188 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK-------DYAFVHFEDRQEAITAMNELNGQTVAGSTLE 160 (230)
Q Consensus 98 lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r-------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~ 160 (230)
|||+|||+++|+++|+++|++||.|..+.+.+ +||||+|.+.++|++|++.|||..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999998873 5999999999999999999999999999986
No 31
>KOG4205|consensus
Probab=99.71 E-value=1.6e-17 Score=137.70 Aligned_cols=152 Identities=20% Similarity=0.281 Sum_probs=119.4
Q ss_pred ccceeEeecCccccccccccccccCCcceEEecchHH---------------HHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR---------------IAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g~fv~~~~~~~---------------~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
...++||++|+|+++++.|++.|.+||..++|....+ ........+ ....+.|+++.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 5688999999999999999999999994444431110 011122222 224678999999999988
Q ss_pred CCCCCCcc-CCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcE
Q psy1188 83 PQEEPDTE-TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQT 153 (230)
Q Consensus 83 ~~~~~~~~-~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~ 153 (230)
+....... ......+|||++||.++++++|++.|.+||.|..+.++ |+|+||.|.+++++.+++ ...-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceee
Confidence 77654322 22356799999999999999999999999998888776 679999999999999998 457889
Q ss_pred ecCcEeEEEEeCCCCchh
Q psy1188 154 VAGSTLEVSLAKPPSDKK 171 (230)
Q Consensus 154 i~g~~l~V~~a~~~~~~~ 171 (230)
|.|+.+.|..|.|+....
T Consensus 163 ~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecCceeeEeeccchhhcc
Confidence 999999999999987654
No 32
>KOG0123|consensus
Probab=99.68 E-value=1.9e-16 Score=135.37 Aligned_cols=155 Identities=24% Similarity=0.395 Sum_probs=133.5
Q ss_pred ceeeeecccccEEEEeccceeEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcC
Q psy1188 2 AIQASIKNQKPIVIFVNVRKFTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKT 65 (230)
Q Consensus 2 ~~~~~~~~~~~~~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~ 65 (230)
-|||+|++.++.+ +||.||+++++..+|.+.|+.|| -||+|+ ++.+|.++.+.+.+
T Consensus 66 ~~rim~s~rd~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~FV~f~-~e~~a~~ai~~~ng 137 (369)
T KOG0123|consen 66 PIRIMWSQRDPSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGYFVQFE-SEESAKKAIEKLNG 137 (369)
T ss_pred EEEeehhccCCce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceeeEEEeC-CHHHHHHHHHHhcC
Confidence 5899999999998 99999999999999999999999 388886 46677777776655
Q ss_pred CCeeeeeCceeeeecCCCCCCCC---ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEE
Q psy1188 66 GKHLLSRGCDIIVDWADPQEEPD---TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVH 135 (230)
Q Consensus 66 ~~~~~~~~~~i~v~~a~~~~~~~---~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~ 135 (230)
. .+.+++|.|.....+.... .........+||.|++.++++++|.++|..||.|.++.++ ++|+||+
T Consensus 138 ~---ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 138 M---LLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred c---ccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 5 8999999998876654422 1133445789999999999999999999999999999988 5699999
Q ss_pred ecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 136 F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
|.+.++|..|++.||+..+.+..+.|..+..+
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 99999999999999999999999999999873
No 33
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=2e-16 Score=134.48 Aligned_cols=76 Identities=32% Similarity=0.458 Sum_probs=70.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
...++|||+|||+++|+++|+++|+.||+|++|+|+ ++||||+|.++++|++||+.||+..|.+++|+|.|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 456799999999999999999999999999999987 369999999999999999999999999999999999
Q ss_pred CCCC
Q psy1188 165 KPPS 168 (230)
Q Consensus 165 ~~~~ 168 (230)
++..
T Consensus 185 ~p~~ 188 (346)
T TIGR01659 185 RPGG 188 (346)
T ss_pred cccc
Confidence 8753
No 34
>KOG0125|consensus
Probab=99.66 E-value=3.6e-16 Score=127.06 Aligned_cols=75 Identities=33% Similarity=0.483 Sum_probs=71.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
.++|||+|||+...|.||+.+|++||+|.+|.|+ ||||||+|++.++|++|.++|||..|.||+|+|..|..+-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhh
Confidence 4689999999999999999999999999999998 7899999999999999999999999999999999998764
Q ss_pred c
Q psy1188 169 D 169 (230)
Q Consensus 169 ~ 169 (230)
.
T Consensus 176 ~ 176 (376)
T KOG0125|consen 176 H 176 (376)
T ss_pred c
Confidence 3
No 35
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=9.1e-16 Score=123.25 Aligned_cols=71 Identities=32% Similarity=0.457 Sum_probs=67.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
.++|||+|||+++|+++|+++|+.||+|.+|.|+ ++||||+|.+.++|+.|| .|||..|.|++|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 4689999999999999999999999999999997 579999999999999999 5999999999999999874
No 36
>KOG0107|consensus
Probab=99.64 E-value=8e-16 Score=114.83 Aligned_cols=74 Identities=34% Similarity=0.552 Sum_probs=69.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
.++||||||+.++++.||+..|..||.|.+|.|- .|||||+|++..+|+.|+..|+|+.|.|..|+|+++....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4679999999999999999999999999998877 5799999999999999999999999999999999998653
No 37
>KOG0122|consensus
Probab=99.60 E-value=5.4e-15 Score=115.86 Aligned_cols=75 Identities=35% Similarity=0.551 Sum_probs=70.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
....+|-|.||+.+++|++|+++|..||.|.++.+. ||||||+|.+.++|.+||+.|||.-++.--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 356789999999999999999999999999999987 679999999999999999999999999999999999
Q ss_pred CCC
Q psy1188 165 KPP 167 (230)
Q Consensus 165 ~~~ 167 (230)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 38
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=7.5e-15 Score=96.52 Aligned_cols=63 Identities=38% Similarity=0.724 Sum_probs=57.6
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeE
Q psy1188 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLE 160 (230)
Q Consensus 98 lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~ 160 (230)
|||+|||+++++++|+++|+.||.|..+.+. +++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999887 36999999999999999999999999999885
No 39
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=7.3e-15 Score=125.32 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=69.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe----cCEEEEEecCH--HHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----KDYAFVHFEDR--QEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~----rg~aFV~F~~~--e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
...+||||||++++++++|+.+|+.||.|.+|.|+ ||||||+|.+. .++.+||..|||..++|+.|+|..|++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 34689999999999999999999999999999999 67999999987 7899999999999999999999999864
No 40
>KOG0105|consensus
Probab=99.58 E-value=1.3e-14 Score=109.30 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=108.6
Q ss_pred ccceeEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
|-++++|+|||.++.|.||.++|.+|| +||+|+...++.+++... ....++++.|+|+++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygR----dGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGR----DGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcc----cccccCcceEEEEec
Confidence 567899999999999999999999999 899998544443344333 456899999999998
Q ss_pred CCCCCCC---------------------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC-EEEEEecCH
Q psy1188 82 DPQEEPD---------------------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-YAFVHFEDR 139 (230)
Q Consensus 82 ~~~~~~~---------------------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg-~aFV~F~~~ 139 (230)
..-.... .........|.|.+||++-+++||+++..+-|.|....+.|+ ++.|+|...
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~ 160 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRK 160 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccceeeeeeeh
Confidence 5432111 111123467999999999999999999999999999999975 999999999
Q ss_pred HHHHHHHHHhCCcEec
Q psy1188 140 QEAITAMNELNGQTVA 155 (230)
Q Consensus 140 e~A~~Ai~~lng~~i~ 155 (230)
|+.+-|+..|+...+.
T Consensus 161 eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 161 EDMKYAVRKLDDQKFR 176 (241)
T ss_pred hhHHHHHHhhcccccc
Confidence 9999999999988664
No 41
>KOG0114|consensus
Probab=99.58 E-value=1.6e-14 Score=98.83 Aligned_cols=76 Identities=30% Similarity=0.468 Sum_probs=70.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
.+.|||.|||+++|.|+..++|++||.|..|+|- +|-|||.|++..+|.+|+++|+|..+.++.|.|-+-.+...
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 4679999999999999999999999999999987 78999999999999999999999999999999999886544
Q ss_pred h
Q psy1188 170 K 170 (230)
Q Consensus 170 ~ 170 (230)
.
T Consensus 98 ~ 98 (124)
T KOG0114|consen 98 F 98 (124)
T ss_pred H
Confidence 3
No 42
>KOG0121|consensus
Probab=99.58 E-value=4e-15 Score=105.62 Aligned_cols=75 Identities=25% Similarity=0.428 Sum_probs=68.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
..+++|||+||+..++||+|.++|+++|+|..|-+- .|||||+|-+.++|..|++-++|+.+..++|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 356799999999999999999999999999987643 479999999999999999999999999999999998
Q ss_pred CCC
Q psy1188 165 KPP 167 (230)
Q Consensus 165 ~~~ 167 (230)
-.-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 743
No 43
>KOG0146|consensus
Probab=99.56 E-value=4.8e-15 Score=117.58 Aligned_cols=77 Identities=25% Similarity=0.435 Sum_probs=72.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||-.||.+..+.+|.++|-.||.|.+.++. |.||||.|++..+|+.||.+|||..|+=++|+|.+.+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 56899999999999999999999999999999887 5699999999999999999999999999999999999
Q ss_pred CCCch
Q psy1188 166 PPSDK 170 (230)
Q Consensus 166 ~~~~~ 170 (230)
|++..
T Consensus 364 Pkdan 368 (371)
T KOG0146|consen 364 PKDAN 368 (371)
T ss_pred ccccC
Confidence 98754
No 44
>KOG0109|consensus
Probab=99.56 E-value=5.7e-15 Score=118.35 Aligned_cols=72 Identities=39% Similarity=0.667 Sum_probs=70.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
+|||||||.++++.+|+.+|++||+|.+|.|+|.||||..++...|..||..|||..|+|..|.|+-++.++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999873
No 45
>KOG0149|consensus
Probab=99.55 E-value=7.6e-15 Score=114.56 Aligned_cols=72 Identities=28% Similarity=0.460 Sum_probs=65.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
...+||||+|++.++.|+|+++|++||+|++..|+ ||||||+|.|.++|.+|++. .+-.|+||+-.|.+|-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 45789999999999999999999999999999888 68999999999999999865 4569999999999887
Q ss_pred C
Q psy1188 166 P 166 (230)
Q Consensus 166 ~ 166 (230)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 46
>KOG0105|consensus
Probab=99.55 E-value=2.3e-14 Score=107.99 Aligned_cols=74 Identities=28% Similarity=0.516 Sum_probs=68.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
..++|||+|||.++.+.+|+++|.+||.|..|.+. ..||||+|++..+|+.||..-+|..+.|..|+|+++..-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 35689999999999999999999999999999877 249999999999999999999999999999999999853
No 47
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.54 E-value=2.4e-14 Score=128.45 Aligned_cols=72 Identities=25% Similarity=0.511 Sum_probs=67.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
..++|||+|||+++++++|+++|++||.|.+|+++ ||||||+|.+.++|++|++.|||..|+|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45789999999999999999999999999999986 6799999999999999999999999999999998755
No 48
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.53 E-value=6e-14 Score=111.15 Aligned_cols=72 Identities=26% Similarity=0.314 Sum_probs=67.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec-----CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK-----DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r-----g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
...+|||+||++.+|+++|+++|+.||+|.+|++++ +||||+|.+.++|+.|+ .|||..|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 357899999999999999999999999999999985 59999999999999999 8999999999999998663
No 49
>KOG0147|consensus
Probab=99.53 E-value=5.2e-15 Score=127.60 Aligned_cols=143 Identities=23% Similarity=0.375 Sum_probs=106.3
Q ss_pred eeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 21 KFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
++|+--+...+++.+|.++|+..| ++++|. +......+. .+ .|+ .+-|.+|.|...
T Consensus 181 tvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~-D~~sVp~ai-aL-sGq--rllg~pv~vq~s 255 (549)
T KOG0147|consen 181 TVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFC-DEQSVPLAI-AL-SGQ--RLLGVPVIVQLS 255 (549)
T ss_pred HHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEe-cccchhhHh-hh-cCC--cccCceeEeccc
Confidence 446666667778999999999988 677775 333332222 22 332 667777777654
Q ss_pred CCCCCC--------C-ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHH
Q psy1188 82 DPQEEP--------D-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT 144 (230)
Q Consensus 82 ~~~~~~--------~-~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~ 144 (230)
...... . .....+...||||||.+++++++|+.+|+.||.|+.|.+. +|||||+|.+.++|.+
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~ 335 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARK 335 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHH
Confidence 321111 1 1112234449999999999999999999999999999877 5799999999999999
Q ss_pred HHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 145 AMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 145 Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
|++.|||.+|.|+.|+|..-..+-
T Consensus 336 a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 336 ALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHHhccceecCceEEEEEeeeec
Confidence 999999999999999998876543
No 50
>KOG4207|consensus
Probab=99.52 E-value=1.9e-14 Score=110.16 Aligned_cols=73 Identities=34% Similarity=0.601 Sum_probs=69.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
....|-|.||.+.+|.++|+.+|++||.|-.|.|+ +|||||.|.+..+|+.|+++|+|.+|+|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35679999999999999999999999999999998 5799999999999999999999999999999999998
Q ss_pred C
Q psy1188 166 P 166 (230)
Q Consensus 166 ~ 166 (230)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 4
No 51
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=9.4e-14 Score=90.55 Aligned_cols=66 Identities=44% Similarity=0.698 Sum_probs=61.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEE
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~ 162 (230)
+|||+|||.++++++|+++|++||.|..+.+.+ ++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999999998773 799999999999999999999999999999874
No 52
>KOG1457|consensus
Probab=99.52 E-value=3.3e-14 Score=110.09 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=106.2
Q ss_pred EEeccceeEeecCccccccccccccccCCc--------------------ceEEecchHHHHHHhhhhhcCCCeeeee--
Q psy1188 15 IFVNVRKFTMAESSREAEEKPSSERTPDYT--------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSR-- 72 (230)
Q Consensus 15 ~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~-- 72 (230)
--+.++++||.+||.++...||..||..|- +|+.|. ++..|.+++.++... .++
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~-s~q~A~aamnaLNGv---rFDpE 105 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFT-SHQFALAAMNALNGV---RFDPE 105 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEec-chHHHHHHHHHhcCe---eeccc
Confidence 345689999999999999999999999865 899996 577788888777554 444
Q ss_pred -CceeeeecCCCCCCCC-------------------------------------c-------------------------
Q psy1188 73 -GCDIIVDWADPQEEPD-------------------------------------T------------------------- 89 (230)
Q Consensus 73 -~~~i~v~~a~~~~~~~-------------------------------------~------------------------- 89 (230)
+..+++++++...+.. +
T Consensus 106 ~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a 185 (284)
T KOG1457|consen 106 TGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSA 185 (284)
T ss_pred cCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhh
Confidence 5567777763210000 0
Q ss_pred -------------------cCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-cC---EEEEEecCHHHHHHHH
Q psy1188 90 -------------------ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-KD---YAFVHFEDRQEAITAM 146 (230)
Q Consensus 90 -------------------~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-rg---~aFV~F~~~e~A~~Ai 146 (230)
.....+.+|||.||.++|||++|+++|+.|-....++|. |+ .||++|++.+.|..|+
T Consensus 186 ~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 186 PDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred hhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHH
Confidence 000245689999999999999999999999887777776 33 8999999999999999
Q ss_pred HHhCCcEe
Q psy1188 147 NELNGQTV 154 (230)
Q Consensus 147 ~~lng~~i 154 (230)
..|+|..|
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99999877
No 53
>KOG0111|consensus
Probab=99.51 E-value=1.1e-14 Score=112.53 Aligned_cols=78 Identities=32% Similarity=0.587 Sum_probs=73.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
..++||||+|..++||.-|...|-.||.|..|.++ |+||||+|...|+|..||+.||+.+|.||+|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45789999999999999999999999999999987 7899999999999999999999999999999999999
Q ss_pred CCCchh
Q psy1188 166 PPSDKK 171 (230)
Q Consensus 166 ~~~~~~ 171 (230)
|..-+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 876554
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.51 E-value=1.6e-13 Score=86.22 Aligned_cols=53 Identities=38% Similarity=0.691 Sum_probs=49.8
Q ss_pred HHHHhhcCCCeEEEEEec---CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 112 LKEAFEQYGRVERVKRIK---DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 112 L~~~F~~~G~i~~~~i~r---g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
|+++|++||+|..+.+.+ ++|||+|.+.++|.+|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 689999999999999995 89999999999999999999999999999999997
No 55
>KOG0113|consensus
Probab=99.50 E-value=1.2e-13 Score=111.09 Aligned_cols=90 Identities=27% Similarity=0.527 Sum_probs=80.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.+||||+-|+++++|.+|+..|+.||.|+.|+++ +|||||+|+++-+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 477899999999999999999999999999999988 579999999999999999999999999999999998
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhccCCCCCCCC
Q psy1188 165 KPPSDKKKKEEILRNRERRMMQMMQGRGGPGPS 197 (230)
Q Consensus 165 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~p~ 197 (230)
..+ .+..+.+.++|++..
T Consensus 179 RgR---------------TvkgW~PRRLGGGLG 196 (335)
T KOG0113|consen 179 RGR---------------TVKGWLPRRLGGGLG 196 (335)
T ss_pred ccc---------------cccccccccccCCcC
Confidence 744 444677777776443
No 56
>KOG0106|consensus
Probab=99.50 E-value=2.1e-14 Score=112.56 Aligned_cols=142 Identities=21% Similarity=0.291 Sum_probs=112.3
Q ss_pred ceeEeecCccccccccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCC-
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEP- 87 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~- 87 (230)
.++||++||+.+.+.++..+|..|| .||+|+. ...|+.+..-+.. ..+.+..+.++|+......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed-~rda~Dav~~l~~---~~l~~e~~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFED-PRDADDAVHDLDG---KELCGERLVVEHARGKRRGR 77 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecccceeccCc-hhhhhcccchhcC---ceecceeeeeeccccccccc
Confidence 4689999999999999999999999 6778863 4444444444322 3666666889998742110
Q ss_pred -----C---------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcE
Q psy1188 88 -----D---------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQT 153 (230)
Q Consensus 88 -----~---------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~ 153 (230)
. .......+.+.|.|++..+.+.+|.++|+.+|.+......++++||+|++.++|.+|++.|++..
T Consensus 78 g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 78 GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchh
Confidence 0 01123446789999999999999999999999997777788999999999999999999999999
Q ss_pred ecCcEeEEEEeC
Q psy1188 154 VAGSTLEVSLAK 165 (230)
Q Consensus 154 i~g~~l~V~~a~ 165 (230)
+.++.|.+...-
T Consensus 158 ~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 158 LNGRRISVEKNS 169 (216)
T ss_pred hcCceeeecccC
Confidence 999999994444
No 57
>KOG0110|consensus
Probab=99.49 E-value=9.4e-14 Score=123.01 Aligned_cols=140 Identities=19% Similarity=0.286 Sum_probs=107.5
Q ss_pred eEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCC-
Q psy1188 22 FTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEP- 87 (230)
Q Consensus 22 ~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~- 87 (230)
++++|||..+..+++.+.|..|| +.++|. ....|.++.+.+.-. .+...++.+.|+......
T Consensus 388 il~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl-~p~eAr~Afrklays---r~k~~plyle~aP~dvf~~ 463 (725)
T KOG0110|consen 388 ILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFL-NPLEARKAFRKLAYS---RFKSAPLYLEWAPEDVFTE 463 (725)
T ss_pred eeeccCccccccHHHHHHhhcccccceeecCcccceeeeeec-CccchHHHHHHhchh---hhccCccccccChhhhccC
Confidence 59999999999999999999999 667774 344455555554333 455555555554211000
Q ss_pred -------------------C-------------cc-----------CC-CCccEEEEecCCCCCCHHHHHHHhhcCCCeE
Q psy1188 88 -------------------D-------------TE-----------TM-SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE 123 (230)
Q Consensus 88 -------------------~-------------~~-----------~~-~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~ 123 (230)
. .. .. ....+|||.||++++|.++|..+|...|.|.
T Consensus 464 ~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~Vl 543 (725)
T KOG0110|consen 464 DPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVL 543 (725)
T ss_pred CccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEE
Confidence 0 00 00 1123399999999999999999999999999
Q ss_pred EEEEe-----------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 124 RVKRI-----------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 124 ~~~i~-----------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
++.|. .|||||+|.+.++|++|++.|+|+.|+|+.|.|+++.
T Consensus 544 S~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 544 SIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred EEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99877 2899999999999999999999999999999999999
No 58
>KOG4206|consensus
Probab=99.47 E-value=3.2e-13 Score=105.10 Aligned_cols=141 Identities=16% Similarity=0.293 Sum_probs=115.4
Q ss_pred eeEeecCccccccccccc----cccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 21 KFTMAESSREAEEKPSSE----RTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~----~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
++||.||...+..++|+. ||++|| |||.|. +..+|..|.+++ ++..+.|+.+++.|
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk-~~~~As~A~r~l---~gfpFygK~mriqy 86 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFK-ETEAASAALRAL---QGFPFYGKPMRIQY 86 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEec-ChhHHHHHHHHh---cCCcccCchhheec
Confidence 788899998888888888 999999 888885 455566666654 34488899999999
Q ss_pred CCCCCCCC---------------------------------------------ccCCCCccEEEEecCCCCCCHHHHHHH
Q psy1188 81 ADPQEEPD---------------------------------------------TETMSKVKVLYVRNLTQYCTEEKLKEA 115 (230)
Q Consensus 81 a~~~~~~~---------------------------------------------~~~~~~~~~lfV~nL~~~~te~~L~~~ 115 (230)
|..+.+.- .....+...+|+.|||..++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 86542211 011456678999999999999999999
Q ss_pred hhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEec-CcEeEEEEeC
Q psy1188 116 FEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVA-GSTLEVSLAK 165 (230)
Q Consensus 116 F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~-g~~l~V~~a~ 165 (230)
|++|.....++++ ++.|||+|.+...|..|..++++..|- ...++|.+++
T Consensus 167 f~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999988887 579999999999999999999999886 8899998876
No 59
>KOG0130|consensus
Probab=99.47 E-value=1.8e-13 Score=98.11 Aligned_cols=79 Identities=25% Similarity=0.474 Sum_probs=71.4
Q ss_pred ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeE
Q psy1188 89 TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLE 160 (230)
Q Consensus 89 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~ 160 (230)
++.+-....|||.++....||+++.+.|..||+|+++.+- ||||.|+|++.++|++|+++|||..|.|.+|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 4444456789999999999999999999999999998754 78999999999999999999999999999999
Q ss_pred EEEeCCC
Q psy1188 161 VSLAKPP 167 (230)
Q Consensus 161 V~~a~~~ 167 (230)
|.|+--+
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9999743
No 60
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=8.6e-13 Score=86.39 Aligned_cols=67 Identities=43% Similarity=0.769 Sum_probs=62.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
+|+|+|||..+++++|+++|+.||.|..+.+. +++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999998887 36999999999999999999999999999999874
No 61
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=6.1e-13 Score=86.30 Aligned_cols=63 Identities=40% Similarity=0.737 Sum_probs=58.6
Q ss_pred EecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEE
Q psy1188 100 VRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162 (230)
Q Consensus 100 V~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~ 162 (230)
|+|||..+++++|+++|++||.|..+.+.+ ++|||+|.+.++|.+|++.|++..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999998873 599999999999999999999999999999874
No 62
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=107.20 Aligned_cols=72 Identities=42% Similarity=0.717 Sum_probs=67.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
..+|||+|||.++|+++|+++|..||.|..+.+. +|||||+|.+.++|..|++.+++..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5799999999999999999999999999888876 57999999999999999999999999999999999653
No 63
>KOG0131|consensus
Probab=99.38 E-value=9.8e-13 Score=99.01 Aligned_cols=74 Identities=31% Similarity=0.388 Sum_probs=68.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
...+|||+||+..++++-|+++|-+.|+|.++.++ +|||||+|.++|+|+=|++-||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34589999999999999999999999999999988 4699999999999999999999999999999999998
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
..
T Consensus 88 ~~ 89 (203)
T KOG0131|consen 88 AH 89 (203)
T ss_pred cc
Confidence 33
No 64
>KOG4206|consensus
Probab=99.38 E-value=1.7e-12 Score=101.10 Aligned_cols=79 Identities=28% Similarity=0.491 Sum_probs=72.5
Q ss_pred CccEEEEecCCCCCCHHHHHH----HhhcCCCeEEEEEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKE----AFEQYGRVERVKRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~----~F~~~G~i~~~~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
+..+|||.||+..+..++|+. +|++||+|..|... ||-|||.|.+.+.|..|+.+|+|..+.|++++|.||
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 445899999999999999998 99999999999877 789999999999999999999999999999999999
Q ss_pred CCCCchhh
Q psy1188 165 KPPSDKKK 172 (230)
Q Consensus 165 ~~~~~~~~ 172 (230)
+.++.-..
T Consensus 88 ~s~sdii~ 95 (221)
T KOG4206|consen 88 KSDSDIIA 95 (221)
T ss_pred cCccchhh
Confidence 98766543
No 65
>KOG0146|consensus
Probab=99.37 E-value=1.3e-12 Score=103.87 Aligned_cols=92 Identities=30% Similarity=0.495 Sum_probs=77.6
Q ss_pred ceeeeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHH
Q psy1188 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAM 146 (230)
Q Consensus 74 ~~i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai 146 (230)
+.|.|+.++...... ..++||||-|...-+|||++.+|..||.|++|.++ |||+||.|.+.-+|..||
T Consensus 3 rpiqvkpadsesrg~-----~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 3 RPIQVKPADSESRGG-----DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCccccccccccCCc-----cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHH
Confidence 556677776655442 34689999999999999999999999999999998 569999999999999999
Q ss_pred HHhCCc-EecC--cEeEEEEeCCCCch
Q psy1188 147 NELNGQ-TVAG--STLEVSLAKPPSDK 170 (230)
Q Consensus 147 ~~lng~-~i~g--~~l~V~~a~~~~~~ 170 (230)
..|+|. ++-| ..|.|+|+...+++
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHH
Confidence 999998 5655 58999999965443
No 66
>KOG0108|consensus
Probab=99.37 E-value=1.8e-12 Score=112.29 Aligned_cols=75 Identities=28% Similarity=0.456 Sum_probs=70.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
..|||||+|+++++++|.++|+..|.|.+++++ |||||++|.+.++|..|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 689999999999999999999999999999987 689999999999999999999999999999999999966
Q ss_pred Cch
Q psy1188 168 SDK 170 (230)
Q Consensus 168 ~~~ 170 (230)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 67
>KOG4211|consensus
Probab=99.34 E-value=3.9e-11 Score=102.76 Aligned_cols=140 Identities=21% Similarity=0.222 Sum_probs=100.1
Q ss_pred EeecCccccccccccccccCCc----------------ceEEecchHH--HHHHhhhhhcCCCeeeeeCc-eeeeecCCC
Q psy1188 23 TMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKR--IAGKLDDIFKTGKHLLSRGC-DIIVDWADP 83 (230)
Q Consensus 23 ~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~--~a~~~~~~~~~~~~~~~~~~-~i~v~~a~~ 83 (230)
-+..|||++|++||.++|+.+. |||||...++ .|.+.++..+..+.|.+... ...++|.-.
T Consensus 14 r~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~ 93 (510)
T KOG4211|consen 14 RLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMR 93 (510)
T ss_pred EecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccccccc
Confidence 4568999999999999999987 9999985443 34455556666666665422 222344332
Q ss_pred CCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEE-EEEe-------cCEEEEEecCHHHHHHHHHHhCCcEec
Q psy1188 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER-VKRI-------KDYAFVHFEDRQEAITAMNELNGQTVA 155 (230)
Q Consensus 84 ~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~-~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~ 155 (230)
...+.. ......|-+++||+.||++||.++|+.--.|.. +.++ .+-|||+|++.+.|++|+.. |...|+
T Consensus 94 ~~g~~s--~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iG 170 (510)
T KOG4211|consen 94 PGGPNS--SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIG 170 (510)
T ss_pred CCCCCC--CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhc
Confidence 222111 134567999999999999999999997644433 2222 35899999999999999955 777888
Q ss_pred CcEeEEEEeC
Q psy1188 156 GSTLEVSLAK 165 (230)
Q Consensus 156 g~~l~V~~a~ 165 (230)
-|-|.|-.|.
T Consensus 171 hRYIEvF~Ss 180 (510)
T KOG4211|consen 171 HRYIEVFRSS 180 (510)
T ss_pred cceEEeehhH
Confidence 8999998665
No 68
>KOG0153|consensus
Probab=99.33 E-value=5.2e-12 Score=103.73 Aligned_cols=74 Identities=27% Similarity=0.540 Sum_probs=67.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCc-EecCcEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQ-TVAGSTLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~-~i~g~~l~V~~a~~~ 167 (230)
...+|||++|-..++|.+|+++|.+||+|.+++++ +++|||+|.+.++|+.|.+++-+. .|+|++|+|.|+++.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCCc
Confidence 56799999999999999999999999999999988 679999999999999998765554 889999999999983
No 69
>KOG0126|consensus
Probab=99.32 E-value=4.8e-13 Score=100.61 Aligned_cols=74 Identities=30% Similarity=0.516 Sum_probs=67.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.+.-|||||||++.||.||.-+|++||+|+.|.++ +||||+.|++..+..-|++.|||..|.||.|+|.-.-
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34569999999999999999999999999999998 4699999999999999999999999999999998655
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
..
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 43
No 70
>KOG1190|consensus
Probab=99.31 E-value=1.6e-11 Score=102.90 Aligned_cols=148 Identities=26% Similarity=0.366 Sum_probs=114.9
Q ss_pred eeEeecCccccccccccccccCCc---------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC
Q psy1188 21 KFTMAESSREAEEKPSSERTPDYT---------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~~f~~~g---------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~ 85 (230)
+++++++-+.++-+-|..+|+.|| +.+.|. +...|..|. ..++++.|.-..|.+++++++-..
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~-d~~sAq~AK-~aLdGqnIyngcCtLrId~Sklt~ 229 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYT-DAVSAQAAK-LALDGQNIYNGCCTLRIDFSKLTD 229 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhcc-chhhHHHHH-HhccCCcccCceeEEEeehhhccc
Confidence 358999999999999999999999 333442 344454444 445677888888999998873210
Q ss_pred C-----------------CCc---------------------------------------cCCCC--ccEEEEecC-CCC
Q psy1188 86 E-----------------PDT---------------------------------------ETMSK--VKVLYVRNL-TQY 106 (230)
Q Consensus 86 ~-----------------~~~---------------------------------------~~~~~--~~~lfV~nL-~~~ 106 (230)
. +.. ....+ ...|-|.|| +..
T Consensus 230 LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~ 309 (492)
T KOG1190|consen 230 LNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEA 309 (492)
T ss_pred ceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhc
Confidence 0 000 00011 367888888 578
Q ss_pred CCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCch
Q psy1188 107 CTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 107 ~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
+|.+.|..+|+-||+|.+|+|+ ++-|.|+|.+...|+-|+++|+|..+.|++|+|.+++-..-.
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 9999999999999999999999 569999999999999999999999999999999999965433
No 71
>KOG0144|consensus
Probab=99.30 E-value=7.4e-12 Score=105.48 Aligned_cols=78 Identities=32% Similarity=0.548 Sum_probs=69.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCc-EecC--cEeEE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQ-TVAG--STLEV 161 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~-~i~g--~~l~V 161 (230)
...-++||+-+|..++|.||+++|++||.|.+|.|+| |||||.|.+.++|.+|+.+|++. +|-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 3456799999999999999999999999999999994 59999999999999999999997 6755 69999
Q ss_pred EEeCCCCch
Q psy1188 162 SLAKPPSDK 170 (230)
Q Consensus 162 ~~a~~~~~~ 170 (230)
++|....++
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 999865555
No 72
>KOG0132|consensus
Probab=99.29 E-value=7.8e-12 Score=111.88 Aligned_cols=78 Identities=27% Similarity=0.469 Sum_probs=73.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCchh
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~~ 171 (230)
-++|||||.|+.+++|.||.++|+.||+|.+|.+. |+||||.+....+|.+|+.+|++..+.++.|+|.|+..+.-+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 45899999999999999999999999999999987 8999999999999999999999999999999999999877665
No 73
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=2.7e-11 Score=79.59 Aligned_cols=54 Identities=24% Similarity=0.561 Sum_probs=48.4
Q ss_pred HHHHHHHhh----cCCCeEEEE-Ee----------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEE
Q psy1188 109 EEKLKEAFE----QYGRVERVK-RI----------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162 (230)
Q Consensus 109 e~~L~~~F~----~~G~i~~~~-i~----------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~ 162 (230)
+++|+++|+ .||.|.++. +. +|||||+|.+.++|.+|++.|||..+.|++|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678999998 999999885 32 5799999999999999999999999999999873
No 74
>KOG0415|consensus
Probab=99.23 E-value=2.1e-11 Score=100.55 Aligned_cols=76 Identities=24% Similarity=0.491 Sum_probs=71.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC--------EEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg--------~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
.++...|||..|.+-+|+++|.-+|+.||+|.+|.|+|+ ||||+|++.+++++|.=.|++.-|.+++|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 356789999999999999999999999999999999975 999999999999999999999999999999999
Q ss_pred eCCC
Q psy1188 164 AKPP 167 (230)
Q Consensus 164 a~~~ 167 (230)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 9853
No 75
>KOG1190|consensus
Probab=99.22 E-value=1e-10 Score=98.11 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=110.9
Q ss_pred eEeecCc-cccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCC
Q psy1188 22 FTMAESS-REAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEE 86 (230)
Q Consensus 22 ~~v~~l~-~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~ 86 (230)
+.|.||- ..+|.+.|..+|.-|| +.|.+. +-..|..|...+... .+.|++|+|.+++....
T Consensus 300 llvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQms-d~~qAqLA~~hL~g~---~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 300 LLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMS-DGQQAQLAMEHLEGH---KLYGKKLRVTLSKHTNV 375 (492)
T ss_pred EEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeec-chhHHHHHHHHhhcc---eecCceEEEeeccCccc
Confidence 3555555 5568999999999999 677775 455666666665444 89999999999865421
Q ss_pred C-------C-----------------------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe----cCEE
Q psy1188 87 P-------D-----------------------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----KDYA 132 (230)
Q Consensus 87 ~-------~-----------------------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~----rg~a 132 (230)
. + ....+++.+|++.|+|.+++||+|+.+|..-|...+.... +.++
T Consensus 376 qlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kma 455 (492)
T KOG1190|consen 376 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMA 455 (492)
T ss_pred cCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCccee
Confidence 1 0 0123677899999999999999999999999877655544 4499
Q ss_pred EEEecCHHHHHHHHHHhCCcEecCc-EeEEEEeCC
Q psy1188 133 FVHFEDRQEAITAMNELNGQTVAGS-TLEVSLAKP 166 (230)
Q Consensus 133 FV~F~~~e~A~~Ai~~lng~~i~g~-~l~V~~a~~ 166 (230)
.+.+++.|+|..|+..++++.+++. .|+|+|++.
T Consensus 456 l~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 456 LPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999999999999775 899999984
No 76
>KOG0124|consensus
Probab=99.17 E-value=2.1e-11 Score=100.88 Aligned_cols=71 Identities=25% Similarity=0.528 Sum_probs=66.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.++||||.+++.+.|+.|+..|..||+|++|.+. ||||||+|+-.|.|+-|++.|||..++||.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4679999999999999999999999999999876 7899999999999999999999999999999998544
No 77
>KOG1456|consensus
Probab=99.17 E-value=2e-10 Score=95.39 Aligned_cols=152 Identities=22% Similarity=0.249 Sum_probs=113.4
Q ss_pred cccee-EeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 18 NVRKF-TMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 18 n~~~~-~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
+++.+ .|++|-..++|.++.+-.+.|| +.++|+. -.-|......... +.+.+.+...-++++.+
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefed-i~~akn~Vnfaa~-n~i~i~gq~Al~NySts 106 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFED-IEGAKNCVNFAAD-NQIYIAGQQALFNYSTS 106 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeecc-ccchhhheehhcc-CcccccCchhhcccchh
Confidence 44444 8899999999999999999999 6677763 2233333222222 35677788777777754
Q ss_pred CCC--CCccCCCCccEEEEecC--CCCCCHHHHHHHhhcCCCeEEEEEecC---EEEEEecCHHHHHHHHHHhCCcEec-
Q psy1188 84 QEE--PDTETMSKVKVLYVRNL--TQYCTEEKLKEAFEQYGRVERVKRIKD---YAFVHFEDRQEAITAMNELNGQTVA- 155 (230)
Q Consensus 84 ~~~--~~~~~~~~~~~lfV~nL--~~~~te~~L~~~F~~~G~i~~~~i~rg---~aFV~F~~~e~A~~Ai~~lng~~i~- 155 (230)
+.. +..+...+.+.|.+.=| -+.+|-+-|..+....|+|.+|.|++. -|.|+|++.+.|++|..+|||..|.
T Consensus 107 q~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYs 186 (494)
T KOG1456|consen 107 QCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYS 186 (494)
T ss_pred hhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccc
Confidence 422 22334445566666555 468899999999999999999999964 8999999999999999999999774
Q ss_pred C-cEeEEEEeCCCCchh
Q psy1188 156 G-STLEVSLAKPPSDKK 171 (230)
Q Consensus 156 g-~~l~V~~a~~~~~~~ 171 (230)
| ++|+|+||+|..-..
T Consensus 187 GCCTLKIeyAkP~rlnV 203 (494)
T KOG1456|consen 187 GCCTLKIEYAKPTRLNV 203 (494)
T ss_pred cceeEEEEecCcceeee
Confidence 4 699999999875544
No 78
>KOG4661|consensus
Probab=99.14 E-value=1.2e-10 Score=101.46 Aligned_cols=73 Identities=27% Similarity=0.444 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
-.++|||.+|+..+...+|+.+|++||+|+-.+|+ |.||||++.+.++|.+||+.|+.++|+|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45789999999999999999999999999999988 5699999999999999999999999999999999998
Q ss_pred C
Q psy1188 166 P 166 (230)
Q Consensus 166 ~ 166 (230)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 5
No 79
>KOG4212|consensus
Probab=99.14 E-value=9.4e-11 Score=99.10 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=66.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||.++|++.|++-|..||.|.++.|+ +.-+.|.|.++++|++|+..|||..+.||.|+|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 456789999999999999999999999999999986 446799999999999999999999999999999874
No 80
>KOG0116|consensus
Probab=99.12 E-value=3.6e-10 Score=97.51 Aligned_cols=73 Identities=25% Similarity=0.414 Sum_probs=64.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
.+|||+|||.+++.++|+++|..||.|+...|.. .||||+|.+.++++.||++ +-..|++++|.|+.-++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 5599999999999999999999999999877652 5999999999999999977 567899999999988865
Q ss_pred Cc
Q psy1188 168 SD 169 (230)
Q Consensus 168 ~~ 169 (230)
..
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 43
No 81
>KOG4212|consensus
Probab=99.11 E-value=3.2e-10 Score=95.95 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=66.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhc-CCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQ-YGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
..+.+||.|||+++.+++|+++|.. .|+|++|.++ ||||.|+|+++|.+++|++.||.+.+.||+|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 3456999999999999999999975 7999999988 7899999999999999999999999999999998655
No 82
>KOG1548|consensus
Probab=99.10 E-value=1.3e-09 Score=89.73 Aligned_cols=145 Identities=18% Similarity=0.227 Sum_probs=108.0
Q ss_pred ceeEeecCccccccccccccccCCc--------------------------ceEEecchHHHHHHhhhhhcCCCeeeeeC
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT--------------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRG 73 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g--------------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~ 73 (230)
..|||.+||.++|.+|+.++|..+| +.+.| ....+..-|...+... .+.|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y-~K~ESVeLA~~ilDe~---~~rg 210 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCY-IKRESVELAIKILDED---ELRG 210 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEe-ecccHHHHHHHHhCcc---cccC
Confidence 3489999999999999999999999 55555 3344555555555444 6779
Q ss_pred ceeeeecCCCCCC---------------------------------CCccCCCCccEEEEecC--C--CCCC-------H
Q psy1188 74 CDIIVDWADPQEE---------------------------------PDTETMSKVKVLYVRNL--T--QYCT-------E 109 (230)
Q Consensus 74 ~~i~v~~a~~~~~---------------------------------~~~~~~~~~~~lfV~nL--~--~~~t-------e 109 (230)
+.++|..|.-... .++......++|.+.|+ | ...+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999988732110 00111234478889998 2 2333 3
Q ss_pred HHHHHHhhcCCCeEEEEEe----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 110 EKLKEAFEQYGRVERVKRI----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 110 ~~L~~~F~~~G~i~~~~i~----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
++|.+-..+||.|.+|.|. .|.+-|.|.+.++|..||+.|+|..+.||.|.-.....+.
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 5667778999999999887 6899999999999999999999999999999988776543
No 83
>KOG1457|consensus
Probab=99.00 E-value=4.7e-09 Score=81.79 Aligned_cols=76 Identities=33% Similarity=0.457 Sum_probs=66.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---------cCEEEEEecCHHHHHHHHHHhCCcEec---CcEeEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---------KDYAFVHFEDRQEAITAMNELNGQTVA---GSTLEV 161 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---------rg~aFV~F~~~e~A~~Ai~~lng~~i~---g~~l~V 161 (230)
..++|||.+||.++.--+|..+|..|-.-+.+.+. +.+|||+|.+..+|..|+.+|||..++ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35799999999999999999999999776666554 349999999999999999999999885 679999
Q ss_pred EEeCCCCc
Q psy1188 162 SLAKPPSD 169 (230)
Q Consensus 162 ~~a~~~~~ 169 (230)
++|+...+
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99996543
No 84
>KOG0106|consensus
Probab=98.98 E-value=4.4e-10 Score=88.38 Aligned_cols=71 Identities=27% Similarity=0.527 Sum_probs=68.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
.+||++||+.+.+.+|..+|..||.|..+.+..+|+||+|.+..+|..|+..||+..|.|.++.|+|++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 59999999999999999999999999999999999999999999999999999999999988999999954
No 85
>KOG0151|consensus
Probab=98.92 E-value=2.5e-09 Score=95.31 Aligned_cols=74 Identities=30% Similarity=0.484 Sum_probs=69.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-----------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEV 161 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-----------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V 161 (230)
+..++|||+||++.++++.|...|++||+|.+++|+ +.||||-|-+..+|++|++.|+|..+.+.++++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 456789999999999999999999999999999998 349999999999999999999999999999999
Q ss_pred EEeCC
Q psy1188 162 SLAKP 166 (230)
Q Consensus 162 ~~a~~ 166 (230)
.|+++
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99974
No 86
>KOG0226|consensus
Probab=98.86 E-value=7e-09 Score=82.24 Aligned_cols=99 Identities=21% Similarity=0.335 Sum_probs=76.1
Q ss_pred eeeCceeeeecCCCCCCCC-ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHH
Q psy1188 70 LSRGCDIIVDWADPQEEPD-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQ 140 (230)
Q Consensus 70 ~~~~~~i~v~~a~~~~~~~-~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e 140 (230)
++....+++.-+..-.++. .+......+||.|.|..+++++.|-..|.+|-.....+++ +||+||.|.+..
T Consensus 164 ki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pa 243 (290)
T KOG0226|consen 164 KIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPA 243 (290)
T ss_pred cccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHH
Confidence 4444445554333333322 1122345689999999999999999999999877777766 569999999999
Q ss_pred HHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 141 EAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 141 ~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
++..|+.+|||..++.++|++.-+..+.
T Consensus 244 d~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 244 DYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999999998777554
No 87
>KOG4205|consensus
Probab=98.85 E-value=2.2e-09 Score=89.48 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
...+|||++|+++++++.|++.|++||+|..|.+++ +|+||+|++.+...+++.. .-+.|.|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 456899999999999999999999999999999995 7999999999999988843 6678999999999999
Q ss_pred CCCchh
Q psy1188 166 PPSDKK 171 (230)
Q Consensus 166 ~~~~~~ 171 (230)
++....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 887554
No 88
>KOG4208|consensus
Probab=98.81 E-value=1.9e-08 Score=77.52 Aligned_cols=74 Identities=30% Similarity=0.440 Sum_probs=66.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcC-CCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQY-GRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
....+||+.+|..+.+.+|..+|.+| |.|..+++. ||||||+|++.+.|.-|-+.||+.-+.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 44579999999999999999999999 667777774 579999999999999999999999999999999998
Q ss_pred CCC
Q psy1188 165 KPP 167 (230)
Q Consensus 165 ~~~ 167 (230)
.|.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 876
No 89
>KOG4660|consensus
Probab=98.77 E-value=5.7e-09 Score=90.91 Aligned_cols=68 Identities=26% Similarity=0.483 Sum_probs=63.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLE 160 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~ 160 (230)
.+..+|+|-|||..|++++|+.+|+.||+|..|+-- ++..||+|-|..+|++|+++||+..|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456789999999999999999999999999987644 78999999999999999999999999999998
No 90
>KOG0533|consensus
Probab=98.74 E-value=5e-08 Score=78.47 Aligned_cols=76 Identities=28% Similarity=0.448 Sum_probs=68.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
...+|+|.|||+.|+++||+++|..||.+..+-+. .|.|-|.|...++|.+|++.+||..++|+++++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 34679999999999999999999999988887776 46999999999999999999999999999999999886
Q ss_pred CCc
Q psy1188 167 PSD 169 (230)
Q Consensus 167 ~~~ 169 (230)
...
T Consensus 162 ~~~ 164 (243)
T KOG0533|consen 162 PSQ 164 (243)
T ss_pred ccc
Confidence 543
No 91
>KOG0129|consensus
Probab=98.74 E-value=8.3e-08 Score=83.13 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=89.1
Q ss_pred cceeEeecCccccccccccccccCCc------------------------ceEEecchHHHHHHhhhhh-cCCCeeee--
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT------------------------KLLEYGLDKRIAGKLDDIF-KTGKHLLS-- 71 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g------------------------~fv~~~~~~~~a~~~~~~~-~~~~~~~~-- 71 (230)
.+++||+.|||+++|+.|...|..|| .|+-|+ ++....++..+- .+.....+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe-~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFE-DERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEec-chHHHHHHHHHHhhcccceEEEE
Confidence 57899999999999999999999999 455665 344444333332 22212222
Q ss_pred e-----Cceeee-ec--CCCCC-CCCccCCCCccEEEEecCCCCCCHHHHHHHhh-cCCCeEEEEEe--------cCEEE
Q psy1188 72 R-----GCDIIV-DW--ADPQE-EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFE-QYGRVERVKRI--------KDYAF 133 (230)
Q Consensus 72 ~-----~~~i~v-~~--a~~~~-~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~i~~~~i~--------rg~aF 133 (230)
. .+.+.| -| ++..- ........+.+|||||+||.-++.++|..+|+ -||.|..+-|- +|-|=
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 1 111111 11 11110 01233345778999999999999999999999 69999988765 67899
Q ss_pred EEecCHHHHHHHHHH
Q psy1188 134 VHFEDRQEAITAMNE 148 (230)
Q Consensus 134 V~F~~~e~A~~Ai~~ 148 (230)
|+|.+..+=.+||.+
T Consensus 418 VtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISA 432 (520)
T ss_pred eeecccHHHHHHHhh
Confidence 999999999999965
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.70 E-value=1.4e-07 Score=62.63 Aligned_cols=69 Identities=26% Similarity=0.416 Sum_probs=49.0
Q ss_pred cEEEEecCCCCCCHH----HHHHHhhcCC-CeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 96 KVLYVRNLTQYCTEE----KLKEAFEQYG-RVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 96 ~~lfV~nL~~~~te~----~L~~~F~~~G-~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
..|+|.|||.+.+-. -|++++..+| +|..| ..+-|.|.|.+.+.|.+|.+.|+|..+.|++|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 369999999998865 4567888886 45544 678999999999999999999999999999999999863
No 93
>KOG0112|consensus
Probab=98.69 E-value=9.5e-09 Score=93.82 Aligned_cols=147 Identities=17% Similarity=0.271 Sum_probs=106.0
Q ss_pred eccceeEeecCccccccccccccccCCcceEEecchHH-----HH---------HHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IA---------GKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g~fv~~~~~~~-----~a---------~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
..-+++|++||...+++.+|+..|..+|..-+...+.. .+ .++-.+........|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 34567899999999999999999999984433331110 01 01111111111112222233333332
Q ss_pred CCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC--EEEEEecCHHHHHHHHHHhCCcEecC--cE
Q psy1188 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQTVAG--ST 158 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg--~aFV~F~~~e~A~~Ai~~lng~~i~g--~~ 158 (230)
+ .....+.+|+++|++++....|...|..||.|..|.+-.| |++|.|++...|+.|+..|.|.-|+| ++
T Consensus 450 ~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 450 P-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRR 522 (975)
T ss_pred c-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcc
Confidence 2 2335678999999999999999999999999999999877 99999999999999999999999987 78
Q ss_pred eEEEEeCCCCch
Q psy1188 159 LEVSLAKPPSDK 170 (230)
Q Consensus 159 l~V~~a~~~~~~ 170 (230)
|+|.|+.+....
T Consensus 523 ~rvdla~~~~~~ 534 (975)
T KOG0112|consen 523 LRVDLASPPGAT 534 (975)
T ss_pred cccccccCCCCC
Confidence 999999976543
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.65 E-value=1e-07 Score=67.45 Aligned_cols=70 Identities=24% Similarity=0.426 Sum_probs=46.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC--EEEEEecCHHHHHHHHHHhCCc-----EecCcEeEEEEeC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQ-----TVAGSTLEVSLAK 165 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg--~aFV~F~~~e~A~~Ai~~lng~-----~i~g~~l~V~~a~ 165 (230)
..|+|.+++..++.++|++.|+.||.|..|.+.+| .|||.|.+.++|++|++.+... .|.+..+.+..-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 36889999999999999999999999999999987 9999999999999999877654 6677777666655
No 95
>KOG0147|consensus
Probab=98.63 E-value=2.1e-07 Score=81.12 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=103.2
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
+--.+++|+||-.+++|..++..|+.|| .|++|. ..+.|..+...+ +.+.|-|+.|+
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~-~~~~ar~a~e~l---ngfelAGr~ik 351 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV-NKEDARKALEQL---NGFELAGRLIK 351 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe-cHHHHHHHHHHh---ccceecCceEE
Confidence 3334489999999999999999999999 788885 455555554443 33688888888
Q ss_pred eecCCCCCCC----------Cc---------------------------------------------------------c
Q psy1188 78 VDWADPQEEP----------DT---------------------------------------------------------E 90 (230)
Q Consensus 78 v~~a~~~~~~----------~~---------------------------------------------------------~ 90 (230)
|......... +. .
T Consensus 352 V~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 431 (549)
T KOG0147|consen 352 VSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVD 431 (549)
T ss_pred EEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccC
Confidence 7653111000 00 0
Q ss_pred CC-------CCccEEEEecC--CCCCC--------HHHHHHHhhcCCCeEEEEEec---CEEEEEecCHHHHHHHHHHhC
Q psy1188 91 TM-------SKVKVLYVRNL--TQYCT--------EEKLKEAFEQYGRVERVKRIK---DYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 91 ~~-------~~~~~lfV~nL--~~~~t--------e~~L~~~F~~~G~i~~~~i~r---g~aFV~F~~~e~A~~Ai~~ln 150 (230)
.. .++..+-+.|+ |...| .+|+.+-.++||+|..|.|.+ |+.||.|.+.+.|..|+.+||
T Consensus 432 p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 432 PADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred ccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHh
Confidence 00 12233444554 22222 256667789999999999885 689999999999999999999
Q ss_pred CcEecCcEeEEEEeC
Q psy1188 151 GQTVAGSTLEVSLAK 165 (230)
Q Consensus 151 g~~i~g~~l~V~~a~ 165 (230)
|..+.|+.|...|-.
T Consensus 512 grWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 512 GRWFAGRMITAKYLP 526 (549)
T ss_pred hhhhccceeEEEEee
Confidence 999999999999876
No 96
>KOG1456|consensus
Probab=98.62 E-value=1.6e-06 Score=72.51 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=106.8
Q ss_pred EeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCC-
Q psy1188 23 TMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEP- 87 (230)
Q Consensus 23 ~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~- 87 (230)
+|-|--.-+|-+-|..+....| +.|||++ -.+|.+|..++... .|.-..+.++|++|+|....
T Consensus 126 TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFds-v~~AqrAk~alNGA-DIYsGCCTLKIeyAkP~rlnV 203 (494)
T KOG1456|consen 126 TILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDS-VEVAQRAKAALNGA-DIYSGCCTLKIEYAKPTRLNV 203 (494)
T ss_pred EeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeech-hHHHHHHHhhcccc-cccccceeEEEEecCcceeee
Confidence 3344444555555665555555 8899974 56676776665544 77778999999999653110
Q ss_pred -----C-----------------------------------------------------------------------ccC
Q psy1188 88 -----D-----------------------------------------------------------------------TET 91 (230)
Q Consensus 88 -----~-----------------------------------------------------------------------~~~ 91 (230)
+ +..
T Consensus 204 ~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g 283 (494)
T KOG1456|consen 204 QKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGG 283 (494)
T ss_pred eecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCC
Confidence 0 001
Q ss_pred CCCccEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEec---CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 92 MSKVKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRIK---DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 92 ~~~~~~lfV~nL~~-~~te~~L~~~F~~~G~i~~~~i~r---g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
..+...+-|-+|.. .++-+.|..+|..||.|+.|+.+| |-|.|++.|..+.++|+..||+..+-|.+|.|++++..
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 12456788889964 566689999999999999999985 69999999999999999999999999999999999843
No 97
>KOG0120|consensus
Probab=98.61 E-value=6.1e-08 Score=85.03 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=100.4
Q ss_pred cEEEEeccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeee
Q psy1188 12 PIVIFVNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSR 72 (230)
Q Consensus 12 ~~~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~ 72 (230)
.+.....+.++|+++||-..++..+.|+...|| +|-+|. +......|...+ +++.+.
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~-dpsvtd~A~agL---nGm~lg 357 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYC-DPSVTDQAIAGL---NGMQLG 357 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeee-CCcchhhhhccc---chhhhc
Confidence 445667788999999999998888888887777 444443 222233333332 233677
Q ss_pred CceeeeecCCCCCCCC-------------------ccCCCCccEEEEecC--CCCCC-H-------HHHHHHhhcCCCeE
Q psy1188 73 GCDIIVDWADPQEEPD-------------------TETMSKVKVLYVRNL--TQYCT-E-------EKLKEAFEQYGRVE 123 (230)
Q Consensus 73 ~~~i~v~~a~~~~~~~-------------------~~~~~~~~~lfV~nL--~~~~t-e-------~~L~~~F~~~G~i~ 123 (230)
++.+.|..+....... .....++..|++.|+ |.+.. + |+++.-+++||.|.
T Consensus 358 d~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~ 437 (500)
T KOG0120|consen 358 DKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVR 437 (500)
T ss_pred CceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCcee
Confidence 7777776654322110 011123344555554 11111 1 34445678999999
Q ss_pred EEEEec-----------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 124 RVKRIK-----------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 124 ~~~i~r-----------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
+|.+.+ |.-||+|.+.+++++|.++|+|..+.||.+...|-..
T Consensus 438 ~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 438 SVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred EEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 999885 3679999999999999999999999999999988763
No 98
>KOG4454|consensus
Probab=98.58 E-value=1.8e-08 Score=78.40 Aligned_cols=73 Identities=26% Similarity=0.276 Sum_probs=67.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC------EEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg------~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
.++|||+|+...++|+-|.++|-+-|+|..|.|.++ ||||.|.++.+..-|++.|||..+.+++++|.+-...
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 468999999999999999999999999999999854 9999999999999999999999999999999887755
No 99
>KOG4209|consensus
Probab=98.58 E-value=8.6e-08 Score=77.13 Aligned_cols=73 Identities=27% Similarity=0.469 Sum_probs=66.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+...+||+|+.+.+|.+++..+|+.||.|..+.++ |+|+||+|.+.+.+++|+. ||+..|.|+.+.|.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 45679999999999999999999999999877766 5699999999999999997 99999999999999988
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
..
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 43
No 100
>KOG1548|consensus
Probab=98.57 E-value=2e-07 Score=77.07 Aligned_cols=73 Identities=26% Similarity=0.316 Sum_probs=64.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEE--------EEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEe
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVER--------VKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTL 159 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~--------~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l 159 (230)
...|||.|||.++|-+++.++|++||.|.. |++- ||=|.+.|...|+..-|++.|++..|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 456999999999999999999999998865 3333 6789999999999999999999999999999
Q ss_pred EEEEeCCC
Q psy1188 160 EVSLAKPP 167 (230)
Q Consensus 160 ~V~~a~~~ 167 (230)
+|+.|+-.
T Consensus 214 rVerAkfq 221 (382)
T KOG1548|consen 214 RVERAKFQ 221 (382)
T ss_pred EEehhhhh
Confidence 99999843
No 101
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.55 E-value=8.7e-08 Score=71.84 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=51.0
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
.++|||+|||++++|++|+++|++|| +||+|.+ .+.|++|.+.+.. ..++++.|+|+
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~-~e~A~~Al~~lng---~~i~Gr~l~V~ 109 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND-EGAATAAISEMDG---KELNGRHIRVN 109 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECC-HHHHHHHHHHcCC---CEECCEEEEEE
Confidence 45789999999999999999999998 8888874 5555555554433 38999999999
Q ss_pred cCCCCCC
Q psy1188 80 WADPQEE 86 (230)
Q Consensus 80 ~a~~~~~ 86 (230)
|+.+...
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9976543
No 102
>KOG4210|consensus
Probab=98.55 E-value=1e-07 Score=79.16 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=102.2
Q ss_pred eccceeEeecCccccccccccccccCCcc-------------------eEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYTK-------------------LLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g~-------------------fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
+-+.++|++++.+.+.+.++..++..+|. .+.|.. ...+..+.. ......+.++.+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~-ks~~~~~l~---~s~~~~~~~~~~~ 161 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAG-KSQFFAALE---ESGSKVLDGNKGE 161 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeecccc-HHHHHHHHH---hhhcccccccccc
Confidence 56778899999999999988999988882 222321 111111111 1111123333332
Q ss_pred eecCCCCC-----CCCccCCCCccEEE-EecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHH
Q psy1188 78 VDWADPQE-----EPDTETMSKVKVLY-VRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAI 143 (230)
Q Consensus 78 v~~a~~~~-----~~~~~~~~~~~~lf-V~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~ 143 (230)
........ ...........++| |++|+.++++++|+.+|..+|.|..+++. ++||||.|.+...+.
T Consensus 162 ~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 162 KDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred CcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence 22222211 11112223445566 99999999999999999999999999877 679999999999999
Q ss_pred HHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 144 TAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 144 ~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
.++.. +...+.++++.+.+..++..
T Consensus 242 ~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 242 LALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred HHhhc-ccCcccCcccccccCCCCcc
Confidence 99877 78899999999999997644
No 103
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.49 E-value=3.4e-07 Score=74.62 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=83.1
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..++||+|||+++++++|.++|.+|| +||+|. ....+..|...+.+ ..+.++.+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~-~~~~~~~a~~~~~~---~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFE-SEESAEKAIEELNG---KELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEec-CHHHHHHHHHHcCC---CeECCceeEee
Confidence 58899999999999999999999998 888996 45566666666543 48999999999
Q ss_pred cCC----CCCCCC---------------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe
Q psy1188 80 WAD----PQEEPD---------------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 128 (230)
Q Consensus 80 ~a~----~~~~~~---------------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~ 128 (230)
++. +..... .........+++.+++..++..++...|..+|.+....+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 191 KAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 954 221111 1122455789999999999999999999999999776655
No 104
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.45 E-value=1.6e-06 Score=60.14 Aligned_cols=73 Identities=26% Similarity=0.380 Sum_probs=60.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC--CCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEec----CcEeEE
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVA----GSTLEV 161 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~--G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~----g~~l~V 161 (230)
+||=|+|||...|.++|.+++... |...-+.++ .|||||.|.+.+.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 478899999999999999988764 555445544 579999999999999999999999774 468899
Q ss_pred EEeCCCC
Q psy1188 162 SLAKPPS 168 (230)
Q Consensus 162 ~~a~~~~ 168 (230)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9998543
No 105
>KOG0120|consensus
Probab=98.35 E-value=7.2e-07 Score=78.39 Aligned_cols=154 Identities=20% Similarity=0.264 Sum_probs=104.9
Q ss_pred eccceeEeecCccccccccccccccCC-----------c--------------ceEEecchHH--HHHHhhhhhcCCCee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDY-----------T--------------KLLEYGLDKR--IAGKLDDIFKTGKHL 69 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~-----------g--------------~fv~~~~~~~--~a~~~~~~~~~~~~~ 69 (230)
-+-..++|+++|..++++....+|.+- | +|++|.+... .+.........+..+
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~ 252 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPL 252 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCCc
Confidence 345567899999999888888887763 1 5566653222 223333333344333
Q ss_pred eeeCce-------eeeecCC----CCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cC
Q psy1188 70 LSRGCD-------IIVDWAD----PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KD 130 (230)
Q Consensus 70 ~~~~~~-------i~v~~a~----~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg 130 (230)
.+.-.. +.+.... ..............++||++||..+++++++++...||.+....++ ++
T Consensus 253 ~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg 332 (500)
T KOG0120|consen 253 KIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKG 332 (500)
T ss_pred eecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccc
Confidence 332110 0001000 0000011122344679999999999999999999999999887766 67
Q ss_pred EEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCch
Q psy1188 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 131 ~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
|||.+|.+......|+..|||..+++++|.|..|......
T Consensus 333 ~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 333 FAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred eeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 9999999999999999999999999999999999976544
No 106
>KOG2193|consensus
Probab=98.18 E-value=1.4e-07 Score=79.81 Aligned_cols=136 Identities=19% Similarity=0.287 Sum_probs=114.8
Q ss_pred ceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCC
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEE 86 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~ 86 (230)
++++++||...++..++..+|..-- +|++|. +...+.++.+.+.. .+.+.|+.+.+..+-++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~p-dq~wa~kaie~~sg--k~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCP-DQQWANKAIETLSG--KVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCC-chhhhhhhHHhhch--hhhhcCceeeccchhhHHH
Confidence 5789999999999999999998622 899995 68888888887544 4688999999988766554
Q ss_pred CCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC-----EEEEEecCHHHHHHHHHHhCCcEecCcEeEE
Q psy1188 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-----YAFVHFEDRQEAITAMNELNGQTVAGSTLEV 161 (230)
Q Consensus 87 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg-----~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V 161 (230)
.++.+-|.|+|+...++.|..+...||.++.|..+.- .--|+|.+.+.+..||..|||..+....++|
T Consensus 79 -------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~ 151 (584)
T KOG2193|consen 79 -------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKV 151 (584)
T ss_pred -------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhc
Confidence 3456889999999999999999999999999886621 4457899999999999999999999999999
Q ss_pred EEeC
Q psy1188 162 SLAK 165 (230)
Q Consensus 162 ~~a~ 165 (230)
.|--
T Consensus 152 ~YiP 155 (584)
T KOG2193|consen 152 GYIP 155 (584)
T ss_pred ccCc
Confidence 9865
No 107
>KOG0107|consensus
Probab=98.17 E-value=8.6e-07 Score=66.84 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=52.4
Q ss_pred cceeEeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
-++|||+||+..+++.||...|..|| |||||+. ...|+.|...|... .|.|..|.|+.+.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed-~RDA~DAvr~LDG~---~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFED-PRDAEDAVRYLDGK---DICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccC-cccHHHHHhhcCCc---cccCceEEEEeecCC
Confidence 46899999999999999999999999 9999984 55666666665443 899999999988654
Q ss_pred CC
Q psy1188 85 EE 86 (230)
Q Consensus 85 ~~ 86 (230)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 43
No 108
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.16 E-value=4.7e-06 Score=68.97 Aligned_cols=70 Identities=20% Similarity=0.527 Sum_probs=60.8
Q ss_pred cEEEEecCCCCCCHHHH------HHHhhcCCCeEEEEEecC----------EE-EEEecCHHHHHHHHHHhCCcEecCcE
Q psy1188 96 KVLYVRNLTQYCTEEKL------KEAFEQYGRVERVKRIKD----------YA-FVHFEDRQEAITAMNELNGQTVAGST 158 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L------~~~F~~~G~i~~~~i~rg----------~a-FV~F~~~e~A~~Ai~~lng~~i~g~~ 158 (230)
.-+||-+||+.+..|+. .++|++||.|..|.|-|. +| ||+|.+.|+|.+||.+.+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999998887762 479999999999887742 32 99999999999999999999999999
Q ss_pred eEEEEeC
Q psy1188 159 LEVSLAK 165 (230)
Q Consensus 159 l~V~~a~ 165 (230)
|+..|..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998875
No 109
>KOG4211|consensus
Probab=98.15 E-value=7.6e-06 Score=70.82 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=58.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
....|-+++||+++|++||.++|+.++ |+++.+. .|-|||+|.++|++++|++. +...+..|-|.|--+.+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCC
Confidence 345678899999999999999999984 6666666 35999999999999999954 77788888888877743
No 110
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.06 E-value=2.9e-06 Score=54.83 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=41.9
Q ss_pred eEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 22 FTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 22 ~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
|||+|||.++++++|+++|++|| +||+|.+ .+.|..+.+.+.+ ..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~~l~g---~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALEELNG---KKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHHHHTT---EEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcC-HHHHHHHHHHcCC---CEECccCcC
Confidence 68999999999999999999999 8899974 6666666665433 488888764
No 111
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.03 E-value=5.3e-06 Score=67.25 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=51.5
Q ss_pred cceeEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
.+++||+|||+.++|++|+++|+.|| +||+|. +...+..+.. +++ ..+.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~-d~eaAe~All--LnG--~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFK-DPQGAETALL--LSG--ATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeC-cHHHHHHHHH--hcC--CeeCCceEEEEecc
Confidence 46899999999999999999999999 899997 4556666653 344 38999999999987
Q ss_pred CCCCC
Q psy1188 83 PQEEP 87 (230)
Q Consensus 83 ~~~~~ 87 (230)
....+
T Consensus 79 ~~~~p 83 (260)
T PLN03120 79 DYQLP 83 (260)
T ss_pred CCCCC
Confidence 55443
No 112
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.01 E-value=1.8e-05 Score=48.71 Aligned_cols=50 Identities=18% Similarity=0.404 Sum_probs=42.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHH
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAM 146 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai 146 (230)
+.|-|.+.+++..+. +..+|..||+|..+.+. ..+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 357788888776655 55589999999999998 679999999999999985
No 113
>KOG1365|consensus
Probab=97.98 E-value=3.9e-05 Score=64.65 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=58.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCe-EE--EEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRV-ER--VKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i-~~--~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
...|-+++||+..+.|||.++|..|..- .. |.++ .|-|||+|.+.|+|..|....+++..+.|-|.|--+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 4568899999999999999999988643 22 3433 468999999999999999998888888999998765
Q ss_pred C
Q psy1188 165 K 165 (230)
Q Consensus 165 ~ 165 (230)
.
T Consensus 360 S 360 (508)
T KOG1365|consen 360 S 360 (508)
T ss_pred c
Confidence 5
No 114
>KOG1855|consensus
Probab=97.93 E-value=1.2e-05 Score=68.51 Aligned_cols=85 Identities=24% Similarity=0.260 Sum_probs=63.5
Q ss_pred CeeeeeCceeeeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec-----------------
Q psy1188 67 KHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK----------------- 129 (230)
Q Consensus 67 ~~~~~~~~~i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r----------------- 129 (230)
..+.+..---+|..-.+-...+ ....++++|.+-|||.+-.-+.|.++|+.+|.|..|+|++
T Consensus 204 ~kL~vseDgkKVrRisPlp~~~-~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~ 282 (484)
T KOG1855|consen 204 SKLEVSEDGKKVRRISPLPEFD-EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFE 282 (484)
T ss_pred ceEEEccCCceeeecCCCCCcc-ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchh
Confidence 4455543333344443333222 2234788999999999999999999999999999999872
Q ss_pred ----CEEEEEecCHHHHHHHHHHhCCc
Q psy1188 130 ----DYAFVHFEDRQEAITAMNELNGQ 152 (230)
Q Consensus 130 ----g~aFV~F~~~e~A~~Ai~~lng~ 152 (230)
-+|+|+|+..+.|.+|.+.||..
T Consensus 283 ~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 283 LQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 18999999999999999887654
No 115
>KOG0128|consensus
Probab=97.85 E-value=2.5e-06 Score=78.10 Aligned_cols=141 Identities=18% Similarity=0.161 Sum_probs=97.2
Q ss_pred ccceeEeecCccccccccccccccCCcceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCCC-----ccCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPD-----TETM 92 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~~-----~~~~ 92 (230)
.+.++|+.||+..+.+.++..+|..++..-... .....+++ .+.|. .++.+-.+..... ....
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vq--------i~~h~n~~---~~rG~-~Y~~F~~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQ--------IVIHKNEK---RFRGK-AYVEFLKPEHAGAAVAFRDSCF 733 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHH--------HHHHhhcc---ccccc-eeeEeecCCchhhhhhhhhhhh
Confidence 345669999999999999999999887322111 00111122 11111 1122222211100 0111
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
-....+||.|+|+..|.++|+.++..+|.+.+.+++ +|.+||.|.++.+|.+++..++...+.-+-+.|..+.
T Consensus 734 ~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 734 FGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 123469999999999999999999999999998765 6799999999999999999988888888889999888
Q ss_pred CCCch
Q psy1188 166 PPSDK 170 (230)
Q Consensus 166 ~~~~~ 170 (230)
|..++
T Consensus 814 p~~~K 818 (881)
T KOG0128|consen 814 PERDK 818 (881)
T ss_pred Ccccc
Confidence 74433
No 116
>KOG3152|consensus
Probab=97.80 E-value=1.4e-05 Score=63.83 Aligned_cols=65 Identities=29% Similarity=0.469 Sum_probs=58.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec------------C--------EEEEEecCHHHHHHHHHHhCCcE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK------------D--------YAFVHFEDRQEAITAMNELNGQT 153 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r------------g--------~aFV~F~~~e~A~~Ai~~lng~~ 153 (230)
..-.||+++||+.++-..|+++|+.||.|-.|.+-. + -|.|+|.+...|+++.+.|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 345899999999999999999999999999988761 1 58999999999999999999999
Q ss_pred ecCcE
Q psy1188 154 VAGST 158 (230)
Q Consensus 154 i~g~~ 158 (230)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99973
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.79 E-value=0.00016 Score=53.50 Aligned_cols=74 Identities=31% Similarity=0.468 Sum_probs=55.0
Q ss_pred CccEEEEecCC------CCCCH---HHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLT------QYCTE---EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~------~~~te---~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
+..+|.|.-+. ...++ .+|.+.|..||.+.-+++.-+.-+|+|.+-+.|.+|+ .|+|..+.|+.|+|++.
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLK 104 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeC
Confidence 34467676555 12222 3677889999999999999999999999999999999 78999999999999988
Q ss_pred CCCC
Q psy1188 165 KPPS 168 (230)
Q Consensus 165 ~~~~ 168 (230)
.|.=
T Consensus 105 tpdW 108 (146)
T PF08952_consen 105 TPDW 108 (146)
T ss_dssp ----
T ss_pred CccH
Confidence 8653
No 118
>KOG0149|consensus
Probab=97.78 E-value=9.9e-06 Score=63.96 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=46.7
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..||||++|+|++..++|++.|++|| .||.|. .++++.++..+. .-.|+||+.+++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~----d~~aa~rAc~dp-~piIdGR~aNcn 86 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFR----DAEAATRACKDP-NPIIDGRKANCN 86 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEee----cHHHHHHHhcCC-CCcccccccccc
Confidence 46899999999999999999999999 566664 244555555555 447899999998
Q ss_pred cCCC
Q psy1188 80 WADP 83 (230)
Q Consensus 80 ~a~~ 83 (230)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8754
No 119
>KOG0121|consensus
Probab=97.77 E-value=1.4e-05 Score=57.42 Aligned_cols=60 Identities=15% Similarity=0.050 Sum_probs=50.6
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..+++||+||+..++|+.|.+||..+| .||+|-+ .+.|+.|.+.+... .++.+.|++
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~-~~dA~~Alryisgt---rLddr~ir~ 110 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYS-RDDAEDALRYISGT---RLDDRPIRI 110 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEec-chhHHHHHHHhccC---cccccceee
Confidence 457889999999999999999999998 8999964 56667777766555 899999999
Q ss_pred ecC
Q psy1188 79 DWA 81 (230)
Q Consensus 79 ~~a 81 (230)
+|-
T Consensus 111 D~D 113 (153)
T KOG0121|consen 111 DWD 113 (153)
T ss_pred ecc
Confidence 985
No 120
>KOG2193|consensus
Probab=97.75 E-value=3.1e-05 Score=65.98 Aligned_cols=77 Identities=29% Similarity=0.410 Sum_probs=64.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhcC--CCeEEEEEecCEEEEEecCHHHHHHHHHHhCCc-EecCcEeEEEEeCCCCchhhH
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITAMNELNGQ-TVAGSTLEVSLAKPPSDKKKK 173 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~--G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~-~i~g~~l~V~~a~~~~~~~~~ 173 (230)
++|++||.+.++-.+|..+|... +.-...-+..+|+||++.+...|.+|++.++|+ ++.|+++.|..+.++..+.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk 82 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRK 82 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhh
Confidence 59999999999999999999764 111222334689999999999999999999998 899999999999987665543
No 121
>KOG1995|consensus
Probab=97.75 E-value=8.6e-05 Score=62.12 Aligned_cols=76 Identities=29% Similarity=0.373 Sum_probs=66.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEE--------Ee--------cCEEEEEecCHHHHHHHHHHhCCcEecC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RI--------KDYAFVHFEDRQEAITAMNELNGQTVAG 156 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~--------i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g 156 (230)
....+|||-+||..+++.+|.++|.++|.|..=+ |- |+-|.|+|.+...|+.|+..+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3456799999999999999999999999886422 11 5799999999999999999999999999
Q ss_pred cEeEEEEeCCCC
Q psy1188 157 STLEVSLAKPPS 168 (230)
Q Consensus 157 ~~l~V~~a~~~~ 168 (230)
.+|+|.+|..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999998543
No 122
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.74 E-value=3.6e-05 Score=49.96 Aligned_cols=52 Identities=8% Similarity=0.095 Sum_probs=38.7
Q ss_pred eEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 22 FTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 22 ~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
|+|+|||+.+++++|.++|+.|| +||+|.+ .+.|..+...+. +..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~-~~~a~~al~~~~---~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSS-EEDAKRALELLN---GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESS-HHHHHHHHHHHT---TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCC-HHHHHHHHHHCC---CcEECCEEcC
Confidence 68999999999999999999998 8899974 555555555532 3578888764
No 123
>PLN03213 repressor of silencing 3; Provisional
Probab=97.68 E-value=3e-05 Score=67.35 Aligned_cols=63 Identities=6% Similarity=0.058 Sum_probs=51.3
Q ss_pred cceeEeecCccccccccccccccCCc---------------ceEEecch-HHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT---------------KLLEYGLD-KRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g---------------~fv~~~~~-~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
--+|||+||++++++++|..+|..|| +||+|... .....++...+... .+.|+.|+|..|+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGA---EWKGR~LKVNKAK 86 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGC---VWKGGRLRLEKAK 86 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCC---eecCceeEEeecc
Confidence 35789999999999999999999999 89999864 23455666665554 8999999999986
Q ss_pred CC
Q psy1188 83 PQ 84 (230)
Q Consensus 83 ~~ 84 (230)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 63
No 124
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.68 E-value=0.00025 Score=49.46 Aligned_cols=69 Identities=16% Similarity=0.301 Sum_probs=50.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEE-------------Ee--cCEEEEEecCHHHHHHHHHHhCCcEecCc-Ee
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------------RI--KDYAFVHFEDRQEAITAMNELNGQTVAGS-TL 159 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~-------------i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~-~l 159 (230)
.-|.|=+.|+.. ...+.+.|++||+|.+.. +. ..+-.|+|.+..+|.+||.. ||..+.|. .+
T Consensus 7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 347777888884 456677899999998875 33 34999999999999999955 99999986 55
Q ss_pred EEEEeCC
Q psy1188 160 EVSLAKP 166 (230)
Q Consensus 160 ~V~~a~~ 166 (230)
-|.++++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 6777753
No 125
>KOG4849|consensus
Probab=97.67 E-value=0.00019 Score=59.91 Aligned_cols=72 Identities=26% Similarity=0.364 Sum_probs=57.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCC--eEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcE-eEEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGST-LEVS 162 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~--i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~-l~V~ 162 (230)
....+|||||-+.+|++||.+....-|- +.+++++ ||||.|...+..+.++-++.|..++|+|.. ..+.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 3467999999999999999988876653 3344433 789999999999999999999999999974 4444
Q ss_pred EeC
Q psy1188 163 LAK 165 (230)
Q Consensus 163 ~a~ 165 (230)
+.+
T Consensus 159 ~NK 161 (498)
T KOG4849|consen 159 YNK 161 (498)
T ss_pred cch
Confidence 444
No 126
>KOG0125|consensus
Probab=97.65 E-value=6.5e-05 Score=62.12 Aligned_cols=81 Identities=6% Similarity=0.012 Sum_probs=59.7
Q ss_pred EeccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 16 FVNVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 16 ~~n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
-..+.+|.|.|+|+...|.||+..|++|| .||.|+ ..+.|+.|+..+... .|.||+|.|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTme-n~~dadRARa~LHgt---~VEGRkIEV 168 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTME-NPADADRARAELHGT---VVEGRKIEV 168 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEec-ChhhHHHHHHHhhcc---eeeceEEEE
Confidence 35688999999999999999999999999 566665 345677777777665 899999999
Q ss_pred ecCCCCCCCCccCCCCccEEEE
Q psy1188 79 DWADPQEEPDTETMSKVKVLYV 100 (230)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~lfV 100 (230)
+.+...-...+....+..+.|+
T Consensus 169 n~ATarV~n~K~~v~p~~~g~~ 190 (376)
T KOG0125|consen 169 NNATARVHNKKKKVLPYPNGWK 190 (376)
T ss_pred eccchhhccCCcccCCCccccc
Confidence 9987664333333333333443
No 127
>KOG0122|consensus
Probab=97.63 E-value=5.8e-05 Score=60.02 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=48.8
Q ss_pred ceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
..+=|.||+.+++|.+|.+||..|| +||.|.+...++.++..+ +++-++.-.|+|+|
T Consensus 190 ~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~L----nG~gyd~LILrvEw 265 (270)
T KOG0122|consen 190 ATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADL----NGYGYDNLILRVEW 265 (270)
T ss_pred ceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHc----cCcccceEEEEEEe
Confidence 3478999999999999999999999 999998644444444444 33478888999999
Q ss_pred CCCC
Q psy1188 81 ADPQ 84 (230)
Q Consensus 81 a~~~ 84 (230)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 128
>KOG0153|consensus
Probab=97.60 E-value=6e-05 Score=62.74 Aligned_cols=63 Identities=14% Similarity=0.325 Sum_probs=53.1
Q ss_pred ccceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
.+..|||++|-..++|.+|++.|.+|| |||+|. ...+|+.|.....+ .+.|+|..|.|.|+.+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ft-TR~aAE~Aae~~~n--~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFT-TREAAEKAAEKSFN--KLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeeh-hhHHHHHHHHhhcc--eeeecceEEEEEeCCC
Confidence 345689999999999999999999999 999996 46677766666444 5799999999999988
No 129
>KOG2202|consensus
Probab=97.51 E-value=4.5e-05 Score=61.06 Aligned_cols=57 Identities=21% Similarity=0.428 Sum_probs=48.3
Q ss_pred HHHHHhh-cCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 111 KLKEAFE-QYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 111 ~L~~~F~-~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
+|...|+ +||+|++++|. +|-.||.|..+|+|++|++.|||..+.|++|...++.-.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 3334444 89999998766 568999999999999999999999999999999988643
No 130
>KOG0111|consensus
Probab=97.50 E-value=0.00012 Score=57.36 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=51.4
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
-+++||+.|-.+++|.-|...|-.|| +||+|+..+++|++++.+ +.-.+.|+.|+|+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNM----nesEL~GrtirVN 85 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNM----NESELFGRTIRVN 85 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcC----chhhhcceeEEEe
Confidence 35678899999999999999999999 899998655555555544 4449999999999
Q ss_pred cCCCCCC
Q psy1188 80 WADPQEE 86 (230)
Q Consensus 80 ~a~~~~~ 86 (230)
++.|...
T Consensus 86 ~AkP~ki 92 (298)
T KOG0111|consen 86 LAKPEKI 92 (298)
T ss_pred ecCCccc
Confidence 9988654
No 131
>KOG1365|consensus
Probab=97.44 E-value=0.00041 Score=58.64 Aligned_cols=139 Identities=15% Similarity=0.107 Sum_probs=79.9
Q ss_pred EeecCccccccccccccccCCc-------------------ceEEecch--HHHHHHhhhhhcCCCeeeeeCceee--ee
Q psy1188 23 TMAESSREAEEKPSSERTPDYT-------------------KLLEYGLD--KRIAGKLDDIFKTGKHLLSRGCDII--VD 79 (230)
Q Consensus 23 ~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~--~~~a~~~~~~~~~~~~~~~~~~~i~--v~ 79 (230)
-.++|||...+.+|-.+|..-. +.+.|.+. .+.|.+-.+.++..+.+.+.+-... +.
T Consensus 64 RaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~ 143 (508)
T KOG1365|consen 64 RARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLK 143 (508)
T ss_pred EecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheE
Confidence 4578999999999988887532 55555432 2233344444444444444322110 01
Q ss_pred cCCCCCCCCccCCC--CccEEEEecCCCCCCHHHHHHHhhcC----CCeEEEEEe-------cCEEEEEecCHHHHHHHH
Q psy1188 80 WADPQEEPDTETMS--KVKVLYVRNLTQYCTEEKLKEAFEQY----GRVERVKRI-------KDYAFVHFEDRQEAITAM 146 (230)
Q Consensus 80 ~a~~~~~~~~~~~~--~~~~lfV~nL~~~~te~~L~~~F~~~----G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai 146 (230)
++.-.........+ .--.|-+++||+++++.++.++|..- |..+.|-.+ .|-|||.|..+++|+.|+
T Consensus 144 iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL 223 (508)
T KOG1365|consen 144 IAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFAL 223 (508)
T ss_pred ecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHH
Confidence 11100100011111 12346678999999999999999632 233333333 368999999999999999
Q ss_pred HHhCCcEecCcEeEEE
Q psy1188 147 NELNGQTVAGSTLEVS 162 (230)
Q Consensus 147 ~~lng~~i~g~~l~V~ 162 (230)
.. |...|+-|-|.+-
T Consensus 224 ~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 224 RK-HRQNIGQRYIELF 238 (508)
T ss_pred HH-HHHHHhHHHHHHH
Confidence 66 4445555555543
No 132
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.39 E-value=0.00015 Score=58.02 Aligned_cols=59 Identities=10% Similarity=-0.009 Sum_probs=46.5
Q ss_pred cceeEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
-..++|+||++.+||++|+++|+.|| +||+|. +..+++.|..+ ++. .|.++.|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~-d~~aaetAllL--nGa--~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFK-DAYALETAVLL--SGA--TIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEEC-CHHHHHHHHhc--CCC--eeCCceEEEEeCc
Confidence 35789999999999999999999999 888996 45566555533 443 7888888887654
No 133
>KOG0113|consensus
Probab=97.39 E-value=8.6e-05 Score=60.67 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=52.9
Q ss_pred ccccEEEEeccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCee
Q psy1188 9 NQKPIVIFVNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHL 69 (230)
Q Consensus 9 ~~~~~~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~ 69 (230)
+..+.+.----.+|||+-|+.+++|.+|++.|+.|| |||+|+. +....+|.+.. .++
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~-erdm~~AYK~a---dG~ 166 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEH-ERDMKAAYKDA---DGI 166 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEecc-HHHHHHHHHhc---cCc
Confidence 344444444446679999999999999999999999 9999974 44444444442 245
Q ss_pred eeeCceeeeecCCCC
Q psy1188 70 LSRGCDIIVDWADPQ 84 (230)
Q Consensus 70 ~~~~~~i~v~~a~~~ 84 (230)
.|+++.|.|.+-.-.
T Consensus 167 ~Idgrri~VDvERgR 181 (335)
T KOG0113|consen 167 KIDGRRILVDVERGR 181 (335)
T ss_pred eecCcEEEEEecccc
Confidence 999999999876443
No 134
>KOG1996|consensus
Probab=97.37 E-value=0.00057 Score=55.86 Aligned_cols=68 Identities=32% Similarity=0.500 Sum_probs=55.0
Q ss_pred EEEecC--CCCCCH---HHHHHHhhcCCCeEEEEEecC---------EEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 98 LYVRNL--TQYCTE---EKLKEAFEQYGRVERVKRIKD---------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 98 lfV~nL--~~~~te---~~L~~~F~~~G~i~~~~i~rg---------~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
|.+.|. +-.+++ +++++-.++||+|..|-|.-. --||+|+..++|.+|+-.|||..++||.++.+|
T Consensus 284 lllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 284 LLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 545554 334443 567788999999999987721 579999999999999999999999999999888
Q ss_pred eC
Q psy1188 164 AK 165 (230)
Q Consensus 164 a~ 165 (230)
-.
T Consensus 364 yn 365 (378)
T KOG1996|consen 364 YN 365 (378)
T ss_pred cc
Confidence 76
No 135
>KOG0126|consensus
Probab=97.36 E-value=8.6e-05 Score=56.56 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=48.9
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
.+..-|||++||++.||-||.-+|++|| +|+-|+. .+...-|.. |.+++.|.|+.|+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYED-QRSTILAVD---N~NGiki~gRtir 108 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYED-QRSTILAVD---NLNGIKILGRTIR 108 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecC-ccceEEEEe---ccCCceecceeEE
Confidence 4556789999999999999999999999 6777763 333322222 2256799999999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|........+
T Consensus 109 VDHv~~Yk~p 118 (219)
T KOG0126|consen 109 VDHVSNYKKP 118 (219)
T ss_pred eeecccccCC
Confidence 9876544433
No 136
>KOG4307|consensus
Probab=97.35 E-value=0.00054 Score=62.01 Aligned_cols=68 Identities=25% Similarity=0.369 Sum_probs=59.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCe-EEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRV-ERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i-~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
+.|-+.|+|++++-+||.++|..|-.+ .+|++. .|-|.|-|++.++|.+|...|++..|..|+++|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 488899999999999999999999654 234433 46899999999999999999999999999998875
No 137
>KOG0115|consensus
Probab=97.32 E-value=0.00045 Score=55.40 Aligned_cols=82 Identities=26% Similarity=0.379 Sum_probs=66.3
Q ss_pred eeeCceeeeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHH
Q psy1188 70 LSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEA 142 (230)
Q Consensus 70 ~~~~~~i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A 142 (230)
...++.++|.|+.. ..|||.||+..++.|.|.+.|+.||+|....+. .+-++|.|...-.|
T Consensus 18 ~~~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a 85 (275)
T KOG0115|consen 18 FPKGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNA 85 (275)
T ss_pred CCCCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhH
Confidence 67789999999854 359999999999999999999999999886655 23789999999999
Q ss_pred HHHHHHhCCcEe----cCcEeEEEE
Q psy1188 143 ITAMNELNGQTV----AGSTLEVSL 163 (230)
Q Consensus 143 ~~Ai~~lng~~i----~g~~l~V~~ 163 (230)
.+|+..++-.-+ .+++.-|.-
T Consensus 86 ~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 86 RKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred HHHHHHhccCccccCCCCCccCCCh
Confidence 999988754433 445555543
No 138
>KOG0129|consensus
Probab=97.30 E-value=0.0014 Score=57.55 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=53.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEE----------EecC---EEEEEecCHHHHHHHHHHhCCcEecCcEeE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK----------RIKD---YAFVHFEDRQEAITAMNELNGQTVAGSTLE 160 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~----------i~rg---~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~ 160 (230)
-+++||||+||++++|+.|...|..||.+.--- ..+| |+|+.|+++.+...-+.+..- ....+-
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 457899999999999999999999999864321 1267 999999999888877766443 445555
Q ss_pred EEEeCCCC
Q psy1188 161 VSLAKPPS 168 (230)
Q Consensus 161 V~~a~~~~ 168 (230)
++.+.+..
T Consensus 335 f~vss~~~ 342 (520)
T KOG0129|consen 335 FKVSSPTI 342 (520)
T ss_pred EEEecCcc
Confidence 55555443
No 139
>KOG2416|consensus
Probab=97.27 E-value=0.001 Score=59.20 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=63.2
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhhcC-CCeEEE--EEecCEEEEEecCHHHHHHHHHHhCCcEe---cCcEeEEEEe
Q psy1188 91 TMSKVKVLYVRNLTQYCTEEKLKEAFEQY-GRVERV--KRIKDYAFVHFEDRQEAITAMNELNGQTV---AGSTLEVSLA 164 (230)
Q Consensus 91 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~~--~i~rg~aFV~F~~~e~A~~Ai~~lng~~i---~g~~l~V~~a 164 (230)
....++.|||.||-.-.|.-+|+.++.+- |.|+.. .-+|-.|||.|.+.++|.+.+.+|||... +++.|.+.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 34467899999999999999999999965 445544 22377999999999999999999999966 6689999998
Q ss_pred CC
Q psy1188 165 KP 166 (230)
Q Consensus 165 ~~ 166 (230)
..
T Consensus 520 ~~ 521 (718)
T KOG2416|consen 520 RA 521 (718)
T ss_pred ch
Confidence 84
No 140
>smart00362 RRM_2 RNA recognition motif.
Probab=97.22 E-value=0.00029 Score=44.88 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=39.6
Q ss_pred eeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 21 KFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
+++|.+||..+++++|.++|.+|| +|++|.. ...|..+...+.+ ..+.++.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~-~~~a~~a~~~~~~---~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFES-EEDAEKAIEALNG---TKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCC-HHHHHHHHHHhCC---cEECCEEEee
Confidence 478999999999999999999988 5677754 4555555544332 3677777665
No 141
>KOG0114|consensus
Probab=97.17 E-value=0.00027 Score=49.03 Aligned_cols=71 Identities=13% Similarity=-0.023 Sum_probs=49.7
Q ss_pred ccccEEEEeccceeEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeee
Q psy1188 9 NQKPIVIFVNVRKFTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSR 72 (230)
Q Consensus 9 ~~~~~~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~ 72 (230)
.+..++-..--+=+||.|||.++|.+|..++|..|| +||-|+... .|..|.+.+. +..+.
T Consensus 8 ~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~-dAk~A~dhls---g~n~~ 83 (124)
T KOG0114|consen 8 KQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIF-DAKKACDHLS---GYNVD 83 (124)
T ss_pred cCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhh-hHHHHHHHhc---ccccC
Confidence 333444333344569999999999999999999999 888887444 4444444433 34788
Q ss_pred CceeeeecCCC
Q psy1188 73 GCDIIVDWADP 83 (230)
Q Consensus 73 ~~~i~v~~a~~ 83 (230)
++.+.|-+-.+
T Consensus 84 ~ryl~vlyyq~ 94 (124)
T KOG0114|consen 84 NRYLVVLYYQP 94 (124)
T ss_pred CceEEEEecCH
Confidence 88888877644
No 142
>KOG4676|consensus
Probab=97.16 E-value=0.00044 Score=58.59 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=58.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-----------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-----------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
..|.|.||.+++|.++++.+|...|+|..+.+. ...|||.|.|...+..|. +|.++++-++-|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 379999999999999999999999999998876 238999999999999885 88888887876665544
Q ss_pred C
Q psy1188 165 K 165 (230)
Q Consensus 165 ~ 165 (230)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 143
>KOG0132|consensus
Probab=97.12 E-value=0.0004 Score=63.50 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=56.2
Q ss_pred EEeccceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 15 IFVNVRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 15 ~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
..+-.++|||+.|+..++|.||.++|+.|| +||.+. ....|.++..++.+. .+.++.|++.|+
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~-~RqdA~kalqkl~n~---kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMV-RRQDAEKALQKLSNV---KVADKTIKIAWA 492 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEe-ehhHHHHHHHHHhcc---cccceeeEEeee
Confidence 445668899999999999999999999999 888885 567777777777654 899999999999
Q ss_pred CCCC
Q psy1188 82 DPQE 85 (230)
Q Consensus 82 ~~~~ 85 (230)
....
T Consensus 493 ~g~G 496 (894)
T KOG0132|consen 493 VGKG 496 (894)
T ss_pred ccCC
Confidence 6554
No 144
>KOG4207|consensus
Probab=97.06 E-value=0.00023 Score=55.39 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=49.9
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
.....|-|.||...++.++|+.+|+.|| +||-|.. ...|+.|.+++.. ..|+|+.|.
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~-k~daedA~damDG---~~ldgRelr 86 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHD-KRDAEDALDAMDG---AVLDGRELR 86 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeee-cchHHHHHHhhcc---eeeccceee
Confidence 4456678999999999999999999999 9999974 5556555555433 389999999
Q ss_pred eecCCC
Q psy1188 78 VDWADP 83 (230)
Q Consensus 78 v~~a~~ 83 (230)
|.+|.-
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 988753
No 145
>KOG2314|consensus
Probab=96.98 E-value=0.0015 Score=57.94 Aligned_cols=70 Identities=27% Similarity=0.377 Sum_probs=55.9
Q ss_pred cEEEEecCCCCC--CHH----HHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEec-CcEeEE
Q psy1188 96 KVLYVRNLTQYC--TEE----KLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVA-GSTLEV 161 (230)
Q Consensus 96 ~~lfV~nL~~~~--te~----~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~-g~~l~V 161 (230)
..|+|.|+|.=- ..+ -|.++|+++|+|....++ +||.|++|.+..+|+.|++.|||+.|. .++..|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 468888888321 122 345789999999998877 689999999999999999999999884 577777
Q ss_pred EEeC
Q psy1188 162 SLAK 165 (230)
Q Consensus 162 ~~a~ 165 (230)
..-+
T Consensus 139 ~~f~ 142 (698)
T KOG2314|consen 139 RLFK 142 (698)
T ss_pred ehhh
Confidence 6554
No 146
>KOG0130|consensus
Probab=96.95 E-value=0.00038 Score=50.58 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=47.3
Q ss_pred eEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 22 FTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 22 ~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
+||.++-.+++|++|.+.|..|| ++|+|++ ...|.+|...++. ..+-+.+|.|.|+-
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet-~keAq~A~~~~Ng---~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYET-LKEAQAAIDALNG---AELLGQNVSVDWCF 150 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHh-HHHHHHHHHhccc---hhhhCCceeEEEEE
Confidence 58999999999999999999999 8899985 5556666655433 38889999999975
Q ss_pred CC
Q psy1188 83 PQ 84 (230)
Q Consensus 83 ~~ 84 (230)
.+
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 43
No 147
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.94 E-value=0.0055 Score=38.69 Aligned_cols=53 Identities=25% Similarity=0.386 Sum_probs=43.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC---CCeEEEEEecC-EEEEEecCHHHHHHHHHHh
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQY---GRVERVKRIKD-YAFVHFEDRQEAITAMNEL 149 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~---G~i~~~~i~rg-~aFV~F~~~e~A~~Ai~~l 149 (230)
.+|+|.++. +++.++++.+|..| .....|..+.+ -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 369999996 68889999999999 12456776655 7899999999999999765
No 148
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.88 E-value=0.001 Score=42.52 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=40.3
Q ss_pred eeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 21 KFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
.+++.+||..++++++.++|..|| +|++|.+ .+.|..+.+.+.. ..++++.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s-~~~a~~a~~~~~~---~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFED-EEDAEKALEALNG---KELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECC-HHHHHHHHHHhCC---CeECCeEEEEeC
Confidence 478999999999999999999877 5777764 3444444444333 357888877754
No 149
>KOG4454|consensus
Probab=96.81 E-value=5.4e-05 Score=59.29 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=82.9
Q ss_pred cceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
-++|||+|+...++|+-|.|+|-+-| +||+|. ++....-|.. |+++ +.+.+..+.+.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~-~E~sv~~a~~-L~ng--~~l~~~e~q~~-- 82 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFP-NENSVQLAGQ-LENG--DDLEEDEEQRT-- 82 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecc-cccchhhhhh-hccc--chhccchhhcc--
Confidence 35689999999999999999999987 566664 2333333333 3333 35555554443
Q ss_pred CCCCCCCccCCCCccEEEEec----CCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhC
Q psy1188 82 DPQEEPDTETMSKVKVLYVRN----LTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~lfV~n----L~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~ln 150 (230)
++.|+ |...++++.+...|+.-|.+..+++. +.++|+++.-..+.-.++....
T Consensus 83 ----------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 83 ----------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred ----------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhc
Confidence 45555 77789999999999999999998877 3499999988888778877766
Q ss_pred CcEe
Q psy1188 151 GQTV 154 (230)
Q Consensus 151 g~~i 154 (230)
+..+
T Consensus 147 ~l~~ 150 (267)
T KOG4454|consen 147 GLEL 150 (267)
T ss_pred ccCc
Confidence 6544
No 150
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.60 E-value=0.012 Score=43.41 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=57.3
Q ss_pred CCccEEEEecCCCCCCH-HHHH---HHhhcCCCeEEEEEe-cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 93 SKVKVLYVRNLTQYCTE-EKLK---EAFEQYGRVERVKRI-KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te-~~L~---~~F~~~G~i~~~~i~-rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.+..+|.|+=|..++.- +||+ ..++.||+|.+|... |.-|.|.|.|..+|-+|+.+++. ..-|..+.+.|-.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 35678888766655543 4554 556889999999988 77999999999999999999776 6678889998865
No 151
>KOG2068|consensus
Probab=96.57 E-value=0.00071 Score=56.37 Aligned_cols=71 Identities=25% Similarity=0.533 Sum_probs=58.9
Q ss_pred EEEEecCCCCCCHHHHH---HHhhcCCCeEEEEEecC-----------EEEEEecCHHHHHHHHHHhCCcEecCcEeEEE
Q psy1188 97 VLYVRNLTQYCTEEKLK---EAFEQYGRVERVKRIKD-----------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~---~~F~~~G~i~~~~i~rg-----------~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~ 162 (230)
-+||-+|+..+..+.+. +.|.+||.|..|.+.++ -++|+|...++|..||...+|..+.|+.|+..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 47888898877665553 58999999999988753 58999999999999999999999999987777
Q ss_pred EeCCC
Q psy1188 163 LAKPP 167 (230)
Q Consensus 163 ~a~~~ 167 (230)
+..++
T Consensus 159 ~gttk 163 (327)
T KOG2068|consen 159 LGTTK 163 (327)
T ss_pred hCCCc
Confidence 66543
No 152
>KOG0108|consensus
Probab=96.56 E-value=0.0016 Score=57.17 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=49.3
Q ss_pred ceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
+.+||+|+|.+++|++|.++|...| +|++|.. ...+..+.+.+. ..++.|++|+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~-~~~~~~a~~~lN---g~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTD-EETAERAIRNLN---GAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCc-hhhHHHHHHhcC---CcccCCceEEeec
Confidence 7789999999999999999999988 8888864 445555555543 3499999999999
Q ss_pred CCCC
Q psy1188 81 ADPQ 84 (230)
Q Consensus 81 a~~~ 84 (230)
+...
T Consensus 95 ~~~~ 98 (435)
T KOG0108|consen 95 ASNR 98 (435)
T ss_pred cccc
Confidence 8654
No 153
>smart00360 RRM RNA recognition motif.
Probab=96.56 E-value=0.0013 Score=41.49 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=36.6
Q ss_pred eecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 24 MAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 24 v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
|.+||+.+++++|+++|++|| +|++|.+ ...|..+...+.. ..+.++.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~-~~~a~~a~~~~~~---~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFES-EEDAEKALEALNG---KELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCC-HHHHHHHHHHcCC---CeeCCcEEEe
Confidence 568899999999999999888 6788864 5555555554432 3667777665
No 154
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.54 E-value=0.0084 Score=46.42 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=51.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhc-CCCe---EEEEEec----------CEEEEEecCHHHHHHHHHHhCCcEecC----
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQ-YGRV---ERVKRIK----------DYAFVHFEDRQEAITAMNELNGQTVAG---- 156 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~-~G~i---~~~~i~r----------g~aFV~F~~~e~A~~Ai~~lng~~i~g---- 156 (230)
..+|.|++||+++|++++.+.++. ++.- ..+.-.. .-|||.|.+.+++..-.+.++|+.+-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 457999999999999999997776 6655 3333111 169999999999999999999987743
Q ss_pred -cEeEEEEeCC
Q psy1188 157 -STLEVSLAKP 166 (230)
Q Consensus 157 -~~l~V~~a~~ 166 (230)
.+-.|++|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 2677888764
No 155
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.53 E-value=0.0025 Score=39.32 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=26.1
Q ss_pred cceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 44 TKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 44 g~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
.+||+|. +.++|..|...+.+. .+.|++|+|.||
T Consensus 23 ~a~V~f~-~~~~A~~a~~~l~~~---~~~g~~l~V~~a 56 (56)
T PF13893_consen 23 FAFVEFA-SVEDAQKAIEQLNGR---QFNGRPLKVSYA 56 (56)
T ss_dssp EEEEEES-SHHHHHHHHHHHTTS---EETTEEEEEEEE
T ss_pred EEEEEEC-CHHHHHHHHHHhCCC---EECCcEEEEEEC
Confidence 3899997 466777777766444 789999999985
No 156
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.51 E-value=0.0047 Score=48.08 Aligned_cols=61 Identities=26% Similarity=0.413 Sum_probs=47.2
Q ss_pred CHHHHHHHhhcCCCeEEEEEecCE--EEEEecCHHHHHHHHHHhC--CcEecCcEeEEEEeCCCC
Q psy1188 108 TEEKLKEAFEQYGRVERVKRIKDY--AFVHFEDRQEAITAMNELN--GQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 108 te~~L~~~F~~~G~i~~~~i~rg~--aFV~F~~~e~A~~Ai~~ln--g~~i~g~~l~V~~a~~~~ 168 (230)
..+.|+++|..|+.+.....++.| ..|.|.+.++|.+|...|+ +..+.|..++|.|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999999999988774 6899999999999999999 999999999999996543
No 157
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.48 E-value=0.024 Score=37.92 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=43.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng 151 (230)
...||. .|..+...||.++|+.||.|.---|--.-|||...+.+.|..|+..++-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhcc
Confidence 456665 9999999999999999999865555566999999999999999988763
No 158
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.46 E-value=0.022 Score=37.47 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=42.6
Q ss_pred EEEEe-cCCCCCCHHHHHHHhhcCCC-----eEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 97 VLYVR-NLTQYCTEEKLKEAFEQYGR-----VERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 97 ~lfV~-nL~~~~te~~L~~~F~~~G~-----i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
++||. +=-..++..+|..++...+. |-.|++...|+||+-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45662 22457888899999987754 56788889999999866 5889999999999999999999875
No 159
>KOG4307|consensus
Probab=96.41 E-value=0.0095 Score=54.27 Aligned_cols=74 Identities=19% Similarity=0.100 Sum_probs=61.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEE-EEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVER-VKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~-~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
-...|||-.||..+++.++.++|..--.|+. |.+. ++.|||.|..++++..|...-+.+.++.+-|+|.-..
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 3468999999999999999999998777766 5554 4599999999999999987767778888999998655
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
..
T Consensus 513 ~~ 514 (944)
T KOG4307|consen 513 DY 514 (944)
T ss_pred hH
Confidence 43
No 160
>KOG0128|consensus
Probab=96.25 E-value=0.00048 Score=63.58 Aligned_cols=86 Identities=23% Similarity=0.302 Sum_probs=63.2
Q ss_pred eeeCceeeeecCCCCCCCCccC-----CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEe
Q psy1188 70 LSRGCDIIVDWADPQEEPDTET-----MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHF 136 (230)
Q Consensus 70 ~~~~~~i~v~~a~~~~~~~~~~-----~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F 136 (230)
.+.++.+.+..+++........ .....++||.||++.+.+++|...|..+|.+..+++. ||+|||.|
T Consensus 637 ~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F 716 (881)
T KOG0128|consen 637 ALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEF 716 (881)
T ss_pred ccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEe
Confidence 3445555566665544322111 1234679999999999999999999999998877654 78999999
Q ss_pred cCHHHHHHHHHHhCCcEec
Q psy1188 137 EDRQEAITAMNELNGQTVA 155 (230)
Q Consensus 137 ~~~e~A~~Ai~~lng~~i~ 155 (230)
.+.+++.+|+.......++
T Consensus 717 ~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 717 LKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred ecCCchhhhhhhhhhhhhh
Confidence 9999999999665544444
No 161
>KOG0112|consensus
Probab=96.24 E-value=0.0011 Score=61.70 Aligned_cols=74 Identities=28% Similarity=0.467 Sum_probs=64.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC-------EEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg-------~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
..+.+||+|||+..+++.+|+..|..+|.|.+|.+-+. |+||.|.+...+-.|+-++.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 35678999999999999999999999999999987732 99999999999999999999998866566666664
Q ss_pred C
Q psy1188 166 P 166 (230)
Q Consensus 166 ~ 166 (230)
+
T Consensus 450 ~ 450 (975)
T KOG0112|consen 450 P 450 (975)
T ss_pred c
Confidence 3
No 162
>KOG0415|consensus
Probab=96.16 E-value=0.0053 Score=51.61 Aligned_cols=62 Identities=8% Similarity=0.110 Sum_probs=47.9
Q ss_pred cccee-EeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 18 NVRKF-TMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 18 n~~~~-~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
-|..+ ||..|-+-+++++|.-+|+.|| +||||+..+.+..+..++ ..+.|+.+.|.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKM----dNvLIDDrRIH 312 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKM----DNVLIDDRRIH 312 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhh----cceeeccceEE
Confidence 34444 9999999999999999999999 888887544444444444 45699999999
Q ss_pred eecCCC
Q psy1188 78 VDWADP 83 (230)
Q Consensus 78 v~~a~~ 83 (230)
|.|+.+
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 999754
No 163
>KOG4660|consensus
Probab=96.13 E-value=0.0025 Score=56.43 Aligned_cols=148 Identities=14% Similarity=0.056 Sum_probs=96.2
Q ss_pred EEEeccceeEeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 14 VIFVNVRKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 14 ~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
...-+-+.|+|-|||+.+++++|.++|+.|| .||+|- +-..|+.|.+.+... .+.++.+...
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~Fy-DvR~A~~Alk~l~~~---~~~~~~~k~~ 145 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFY-DVRDAERALKALNRR---EIAGKRIKRP 145 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEe-ehHhHHHHHHHHHHH---HhhhhhhcCC
Confidence 3445667899999999999999999999999 778884 555666555554333 4555544411
Q ss_pred cCCCCCC-----------------CCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCH
Q psy1188 80 WADPQEE-----------------PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDR 139 (230)
Q Consensus 80 ~a~~~~~-----------------~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~ 139 (230)
....... .......+-..+|. .|++..+..-++..|..+|.+.. +.. +.--|+.|.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~ 223 (549)
T KOG4660|consen 146 GGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADN 223 (549)
T ss_pred CcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccc
Confidence 1100000 00000111223433 49999999888888888888766 322 33567888888
Q ss_pred HHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 140 QEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 140 e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
.++..+...+ |..+.+....+.++.+..
T Consensus 224 ~s~a~~~~~~-G~~~s~~~~v~t~S~~~g 251 (549)
T KOG4660|consen 224 RSYAFSEPRG-GFLISNSSGVITFSGPGG 251 (549)
T ss_pred cchhhcccCC-ceecCCCCceEEecCCCc
Confidence 8887776644 778888888888888743
No 164
>KOG4676|consensus
Probab=96.08 E-value=0.00095 Score=56.61 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=60.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCchh
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~~ 171 (230)
.+++|++|+..+...++-+.|..+|+|....+. .-+|-|.|........|+ .++|.++.-...++..-+|.....
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP~kK~~ 230 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKPHKKRS 230 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCccccch
Confidence 679999999999999999999999999887766 338889999999999998 457887776666666666654443
No 165
>KOG0116|consensus
Probab=95.85 E-value=0.0037 Score=54.57 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=43.4
Q ss_pred eEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 22 FTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 22 ~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
|||+|||.++++.+|++.|.+|| +||+|+. ..++..+..+ .++.++++++.|+.-.
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~-~~~~~~~i~A----sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFEN-AAAVQNAIEA----SPLEIGGRKLNVEEKR 365 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEee-cchhhhhhhc----CccccCCeeEEEEecc
Confidence 89999999999999999999999 4888863 4444444444 3678888888887543
No 166
>KOG4574|consensus
Probab=95.81 E-value=0.0055 Score=56.85 Aligned_cols=72 Identities=29% Similarity=0.396 Sum_probs=62.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC--EEEEEecCHHHHHHHHHHhCCcEe--cCcEeEEEEeCCCC
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQTV--AGSTLEVSLAKPPS 168 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg--~aFV~F~~~e~A~~Ai~~lng~~i--~g~~l~V~~a~~~~ 168 (230)
+.++.|.+-+.+-.-|..+|+.||.|.+++.+|+ .|.|.|.+.+.|..|+++|+|+++ -|-+.+|.+|+.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3555666677788889999999999999999987 799999999999999999999965 67899999999653
No 167
>KOG2253|consensus
Probab=95.72 E-value=0.0076 Score=54.50 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=64.8
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 91 TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 91 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
...+..++||+|+...+..+-++.+...+|-|.++...+ |||..|..+..+.+|+..++-..++|..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345667899999999999999999999999999988877 999999999999999999999999998777665
No 168
>KOG2135|consensus
Probab=95.62 E-value=0.0076 Score=52.49 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=58.1
Q ss_pred cEEEEecCCCCCCH-HHHHHHhhcCCCeEEEEEec--CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 96 KVLYVRNLTQYCTE-EKLKEAFEQYGRVERVKRIK--DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 96 ~~lfV~nL~~~~te-~~L~~~F~~~G~i~~~~i~r--g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
+.|-+.-.|+..+. ++|..+|.+||+|..|.+-- .-|.|+|.+..+|-+|- ..++..|++|.|+|.|-++
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 34555555665554 89999999999999998773 57999999999997775 6689999999999999998
No 169
>KOG2591|consensus
Probab=95.55 E-value=0.045 Score=48.80 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=54.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhc--CCCeEEEEEe-cCEEEEEecCHHHHHHHHHHhCCc--EecCcEeEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQ--YGRVERVKRI-KDYAFVHFEDRQEAITAMNELNGQ--TVAGSTLEV 161 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~--~G~i~~~~i~-rg~aFV~F~~~e~A~~Ai~~lng~--~i~g~~l~V 161 (230)
+-+.|.++-||..+..|+++.+|+. +-++.+|..- .+-=||+|++..||+.|.+.|... +|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4456888999999999999999975 7788888866 556799999999999998877653 666665543
No 170
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.13 E-value=0.33 Score=34.47 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=47.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcC-CCeEEEEEecC------EEEEEecCHHHHHHHHHHhCCcEecC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQY-GRVERVKRIKD------YAFVHFEDRQEAITAMNELNGQTVAG 156 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~~~i~rg------~aFV~F~~~e~A~~Ai~~lng~~i~g 156 (230)
+..+.+...|.-++-++|..+.+.+ ..|..++|+|+ .+.+.|.+.++|..-.+.+||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445555566666667787666665 35778888875 68999999999999999999997754
No 171
>KOG4285|consensus
Probab=94.32 E-value=0.1 Score=43.18 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=52.4
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeEEEEEec-C-EEEEEecCHHHHHHHHHHhCCcEecCc-EeEEEEeCCCCc
Q psy1188 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK-D-YAFVHFEDRQEAITAMNELNGQTVAGS-TLEVSLAKPPSD 169 (230)
Q Consensus 98 lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r-g-~aFV~F~~~e~A~~Ai~~lng~~i~g~-~l~V~~a~~~~~ 169 (230)
|-|-+.|+.-. ..|..+|++||.|.+....+ | +-+|.|.+.-+|.+||.. ||+.|+|. -|-|.-+..+..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHH
Confidence 44456766543 45667899999998877663 3 899999999999999955 99999886 566766665433
No 172
>KOG0533|consensus
Probab=94.11 E-value=0.039 Score=44.76 Aligned_cols=64 Identities=6% Similarity=0.088 Sum_probs=47.4
Q ss_pred eccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..+.++.|.||+..+++.+|+++|++|+ +-|.|. ....|+++.+.+.+ +.++|+.+.+
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~-r~~DA~~avk~~~g---v~ldG~~mk~ 156 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFN-RRDDAERAVKKYNG---VALDGRPMKI 156 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeec-chHhHHHHHHHhcC---cccCCceeee
Confidence 4456789999999999999999999996 334443 23356667776654 5899998888
Q ss_pred ecCCCC
Q psy1188 79 DWADPQ 84 (230)
Q Consensus 79 ~~a~~~ 84 (230)
....+.
T Consensus 157 ~~i~~~ 162 (243)
T KOG0533|consen 157 EIISSP 162 (243)
T ss_pred EEecCc
Confidence 776543
No 173
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.61 E-value=0.55 Score=30.08 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=43.9
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEE
Q psy1188 106 YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEV 161 (230)
Q Consensus 106 ~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V 161 (230)
.++-++++..+..|+- ..|..-+.==||.|.+.++|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5677899999999964 444444433489999999999999999999888877654
No 174
>KOG0804|consensus
Probab=91.72 E-value=1.2 Score=39.14 Aligned_cols=62 Identities=19% Similarity=0.419 Sum_probs=55.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcC-CCeEEEEEecC------EEEEEecCHHHHHHHHHHhCCcEecC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQY-GRVERVKRIKD------YAFVHFEDRQEAITAMNELNGQTVAG 156 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~-G~i~~~~i~rg------~aFV~F~~~e~A~~Ai~~lng~~i~g 156 (230)
+..|+|=.+|..+|-.||..|...| -.|..++++|+ ...|.|.+.++|..-.+.+||+.++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999998876 46888999976 68999999999999999999998764
No 175
>KOG4661|consensus
Probab=90.89 E-value=0.14 Score=45.91 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=45.5
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
-+.+||..|+..+...+|+.||+.|| .||.+.+ ++.|.+.+.+.....|+|+-|.|+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSt----s~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMST----SAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecc----hHHHHHHHHHhhhhhhcceeeeee
Confidence 35689999999999999999999999 5566643 223333333335558999999999
Q ss_pred cCCCC
Q psy1188 80 WADPQ 84 (230)
Q Consensus 80 ~a~~~ 84 (230)
.++..
T Consensus 481 kaKNE 485 (940)
T KOG4661|consen 481 KAKNE 485 (940)
T ss_pred ecccC
Confidence 87643
No 176
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=89.77 E-value=0.31 Score=32.76 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=36.1
Q ss_pred eeEeecCcccccccc----ccccccCCc----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 21 KFTMAESSREAEEKP----SSERTPDYT----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~----l~~~f~~~g----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
-++|.|||-+.+... |+.|+..+| +++.|.. .+.|..|.+.+.+. .+.|++|.|.+...
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~~~tAilrF~~-~~~A~RA~KRmegE---dVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVSGGTAILRFPN-QEFAERAQKRMEGE---DVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--TT-EEEEESS-HHHHHHHHHHHTT-----SSSS--EEESS--
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEeCCEEEEEeCC-HHHHHHHHHhhccc---ccccceEEEEEcCC
Confidence 468999998776554 445555677 8889964 66666666665554 88999999998743
No 177
>smart00361 RRM_1 RNA recognition motif.
Probab=89.51 E-value=0.4 Score=30.81 Aligned_cols=30 Identities=7% Similarity=-0.033 Sum_probs=21.1
Q ss_pred ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 45 KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 45 ~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
+||+|.. ...|.+|...+.+. .+.|+.|.+
T Consensus 40 ~fV~f~~-~~dA~~A~~~l~g~---~~~gr~l~~ 69 (70)
T smart00361 40 VYITFER-SEDAARAIVDLNGR---YFDGRTVKA 69 (70)
T ss_pred EEEEECC-HHHHHHHHHHhCCC---EECCEEEEe
Confidence 7999975 55666666655444 888888765
No 178
>KOG4210|consensus
Probab=89.07 E-value=0.2 Score=41.88 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=60.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
...++|++++..++.+.+...++..+|.+..+... ++++.+.|...+.+..|+.......+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 35689999999999999999999999987666544 6799999999999999996644457777777666666
Q ss_pred CCC
Q psy1188 166 PPS 168 (230)
Q Consensus 166 ~~~ 168 (230)
.+.
T Consensus 167 ~~~ 169 (285)
T KOG4210|consen 167 RRG 169 (285)
T ss_pred ccc
Confidence 544
No 179
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.69 E-value=1.2 Score=30.24 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=42.4
Q ss_pred ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCC----CccCCCCccEEEEecCCCCCCHHHHHHHhh
Q psy1188 45 KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEP----DTETMSKVKVLYVRNLTQYCTEEKLKEAFE 117 (230)
Q Consensus 45 ~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~----~~~~~~~~~~lfV~nL~~~~te~~L~~~F~ 117 (230)
|++.|+ +...|..+.++ ....+.++++.+.|.-..-.... .-......++|-|.|||...++++|++..+
T Consensus 1 AlITF~-e~~VA~~i~~~--~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFE-EEGVAQRILKK--KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeC-cHHHHHHHHhC--CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 577886 45566655555 23355666666666543211111 111223457899999999999999998654
No 180
>KOG2318|consensus
Probab=85.98 E-value=4.6 Score=36.70 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=57.4
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHhhcC----CCeEEEEEe----------------c----------------------
Q psy1188 93 SKVKVLYVRNLTQ-YCTEEKLKEAFEQY----GRVERVKRI----------------K---------------------- 129 (230)
Q Consensus 93 ~~~~~lfV~nL~~-~~te~~L~~~F~~~----G~i~~~~i~----------------r---------------------- 129 (230)
..+++|=|-||.+ .+..++|.-+|+.| |.|.+|.|- .
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4567899999997 56678999999887 688888765 0
Q ss_pred ---------------C--EEEEEecCHHHHHHHHHHhCCcEecC--cEeEEEE
Q psy1188 130 ---------------D--YAFVHFEDRQEAITAMNELNGQTVAG--STLEVSL 163 (230)
Q Consensus 130 ---------------g--~aFV~F~~~e~A~~Ai~~lng~~i~g--~~l~V~~ 163 (230)
+ ||.|+|.+.+.|.+..+.++|..+.. ..|-+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0 89999999999999999999998865 4555554
No 181
>KOG0151|consensus
Probab=82.30 E-value=1.4 Score=40.80 Aligned_cols=63 Identities=5% Similarity=0.117 Sum_probs=46.4
Q ss_pred ccce--eEeecCccccccccccccccCCc----------------------ceEEecchHHHHHHhhhhhcCCCeeeeeC
Q psy1188 18 NVRK--FTMAESSREAEEKPSSERTPDYT----------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRG 73 (230)
Q Consensus 18 n~~~--~~v~~l~~~~~e~~l~~~f~~~g----------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~ 73 (230)
.|.+ +|++||+..++|+.|...|..|| .||-|-. ...++.|.+.+ +++.+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmn-R~D~era~k~l---qg~iv~~ 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMN-RADAERALKEL---QGIIVME 246 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehh-hhhHHHHHHHh---cceeeee
Confidence 4444 59999999999999999999998 6777642 33344444443 4558899
Q ss_pred ceeeeecCCCC
Q psy1188 74 CDIIVDWADPQ 84 (230)
Q Consensus 74 ~~i~v~~a~~~ 84 (230)
..+++.|++.-
T Consensus 247 ~e~K~gWgk~V 257 (877)
T KOG0151|consen 247 YEMKLGWGKAV 257 (877)
T ss_pred eeeeecccccc
Confidence 99999998543
No 182
>KOG4208|consensus
Probab=79.56 E-value=1.6 Score=34.32 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=41.1
Q ss_pred eEeecCccccccccccccccCCc--------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 22 FTMAESSREAEEKPSSERTPDYT--------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 22 ~~v~~l~~~~~e~~l~~~f~~~g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
+++..+|.-..+.++..+|.+++ +||+|++ .+.|.-+.+.+++- .+.++-+.+.+-
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs-~eVA~IaAETMNNY---Ll~e~lL~c~vm 127 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFES-EEVAKIAAETMNNY---LLMEHLLECHVM 127 (214)
T ss_pred eeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEecc-HHHHHHHHHHhhhh---hhhhheeeeEEe
Confidence 48888999999999999999985 9999985 55555555554332 556665555554
Q ss_pred CC
Q psy1188 82 DP 83 (230)
Q Consensus 82 ~~ 83 (230)
.+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 33
No 183
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=79.49 E-value=34 Score=32.05 Aligned_cols=69 Identities=6% Similarity=0.138 Sum_probs=55.1
Q ss_pred cEEEEecC--CCCCCHHHHHHHhhcCCCe-----EEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 96 KVLYVRNL--TQYCTEEKLKEAFEQYGRV-----ERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 96 ~~lfV~nL--~~~~te~~L~~~F~~~G~i-----~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
.++|| |+ -..++..+|-.+...-+.| -.|+|...|.||+-.. +.|...++.|++..+.|++|.|+.+..
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 45666 44 5688888898888776655 3477888999999865 668889999999999999999998863
No 184
>KOG2891|consensus
Probab=74.61 E-value=1.6 Score=35.91 Aligned_cols=73 Identities=21% Similarity=0.438 Sum_probs=51.4
Q ss_pred ccEEEEecCCCC------------CCHHHHHHHhhcCCCeEEEEEe------------------cCE---------EEEE
Q psy1188 95 VKVLYVRNLTQY------------CTEEKLKEAFEQYGRVERVKRI------------------KDY---------AFVH 135 (230)
Q Consensus 95 ~~~lfV~nL~~~------------~te~~L~~~F~~~G~i~~~~i~------------------rg~---------aFV~ 135 (230)
..+||+.+||-. -+++-|+..|+.||.|..|.|+ .|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 357888888722 4678899999999999998876 122 4677
Q ss_pred ecCHHHHHHHHHHhCCcEe----cCc----EeEEEEeCCC
Q psy1188 136 FEDRQEAITAMNELNGQTV----AGS----TLEVSLAKPP 167 (230)
Q Consensus 136 F~~~e~A~~Ai~~lng~~i----~g~----~l~V~~a~~~ 167 (230)
|-..-.-..|+.+|.|..+ .|. .++|.|.+.+
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 7766677778888887644 232 5677766643
No 185
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=73.90 E-value=3 Score=28.88 Aligned_cols=46 Identities=4% Similarity=0.047 Sum_probs=33.7
Q ss_pred ceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCC
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTG 66 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~ 66 (230)
.++.++|+|...+.++|.+++.... +||+|. +...+....+.+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~-~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFT-SPQAAIRFYKAFNGK 68 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcC-CHHHHHHHHHHHcCC
Confidence 3678999999998888877776522 999996 566776776665544
No 186
>KOG4410|consensus
Probab=72.23 E-value=18 Score=30.16 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=34.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCe-EEEEEe--cCEEEEEecCHH
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRV-ERVKRI--KDYAFVHFEDRQ 140 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i-~~~~i~--rg~aFV~F~~~e 140 (230)
.-|+++|||.++.-.||+..+.+.+.+ .++... .+-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 459999999999999999999887754 233322 568999998743
No 187
>KOG4019|consensus
Probab=71.49 E-value=3.9 Score=31.60 Aligned_cols=72 Identities=14% Similarity=0.282 Sum_probs=52.0
Q ss_pred EEEEecCCCCCCH-----HHHHHHhhcCCCeEEEEEecCE--EEEEecCHHHHHHHHHHhCCcEecCc-EeEEEEeCCCC
Q psy1188 97 VLYVRNLTQYCTE-----EKLKEAFEQYGRVERVKRIKDY--AFVHFEDRQEAITAMNELNGQTVAGS-TLEVSLAKPPS 168 (230)
Q Consensus 97 ~lfV~nL~~~~te-----~~L~~~F~~~G~i~~~~i~rg~--aFV~F~~~e~A~~Ai~~lng~~i~g~-~l~V~~a~~~~ 168 (230)
++++.+++.++-. .....+|.+|-+.....++|+| --|.|.+.+.|..|...++...+.|. .++.-++.+..
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGH 91 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCC
Confidence 3566666644332 3344567766666555666654 45789999999999999999999988 89999998653
No 188
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=70.30 E-value=11 Score=35.48 Aligned_cols=27 Identities=30% Similarity=0.199 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCC
Q psy1188 199 AHAPLLTGPPMPRGSVPLQAALSSTRM 225 (230)
Q Consensus 199 ~~~~~~~~~~~~~~~~p~~~~~~~~~~ 225 (230)
..+++++++.||++..|+++++++||.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (653)
T PTZ00009 622 GGMPGGMPGGMPGGAGPAGAGASSGPT 648 (653)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCc
Confidence 345677777788777777777777763
No 189
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=70.07 E-value=9 Score=24.12 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=14.9
Q ss_pred HHHHHHhhcCCCeEEEEE
Q psy1188 110 EKLKEAFEQYGRVERVKR 127 (230)
Q Consensus 110 ~~L~~~F~~~G~i~~~~i 127 (230)
.+||++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999976553
No 190
>KOG4209|consensus
Probab=68.67 E-value=6.9 Score=31.70 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=42.9
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
.++..+|++|+...++..++...|+.|| +|++|. +.+....+.. + ++ -.+.+..+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~-~~~~~~~ay~-l-~g--s~i~~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFS-SYELVEEAYK-L-DG--SEIPGPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecc-cHhhhHHHhh-c-CC--cccccccce
Confidence 4567789999999999888999999998 566665 3444444444 2 33 277777777
Q ss_pred eecCC
Q psy1188 78 VDWAD 82 (230)
Q Consensus 78 v~~a~ 82 (230)
+.+..
T Consensus 174 vt~~r 178 (231)
T KOG4209|consen 174 VTLKR 178 (231)
T ss_pred eeeee
Confidence 76653
No 191
>KOG4483|consensus
Probab=63.99 E-value=19 Score=31.48 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=44.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEe-cCEEEEEecCHHHHHHHHHH
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGR-VERVKRI-KDYAFVHFEDRQEAITAMNE 148 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~-i~~~~i~-rg~aFV~F~~~e~A~~Ai~~ 148 (230)
..|=|.++|...-.+||...|+.|+. --.|..+ ...+|-.|.+...|..||-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhhc
Confidence 57889999999999999999999975 3445555 45999999999999999843
No 192
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=63.77 E-value=6.7 Score=27.52 Aligned_cols=28 Identities=4% Similarity=0.210 Sum_probs=15.8
Q ss_pred eEeecCccccccccccccccCCc--ceEEe
Q psy1188 22 FTMAESSREAEEKPSSERTPDYT--KLLEY 49 (230)
Q Consensus 22 ~~v~~l~~~~~e~~l~~~f~~~g--~fv~~ 49 (230)
|.+.++...++-++|++.|.+|+ +||+|
T Consensus 4 l~~~g~~~~~~re~iK~~f~~~g~V~yVD~ 33 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQFGEVAYVDF 33 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-SS--EEEEE-
T ss_pred EEEecCCCCcCHHHHHHHHHhcCCcceEEe
Confidence 35666888888999999999998 44444
No 193
>KOG3152|consensus
Probab=62.54 E-value=2.1 Score=34.89 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=22.9
Q ss_pred ceeEeecCccccccccccccccCCc
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT 44 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g 44 (230)
.=+|+.++|+.++..-+++++.+||
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yG 99 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYG 99 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhcc
Confidence 3469999999999999999999999
No 194
>KOG4008|consensus
Probab=62.18 E-value=4.8 Score=32.39 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=28.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK 126 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~ 126 (230)
...+||+-|+|..+|++.|..+.++.|.+..+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 345799999999999999999999999766543
No 195
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=61.42 E-value=9.2 Score=32.31 Aligned_cols=36 Identities=33% Similarity=0.443 Sum_probs=26.7
Q ss_pred EEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 132 AFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 132 aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
|||+|++..+|..|++.+.... ++.++|..|-++.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998655443 35567777765443
No 196
>KOG2295|consensus
Probab=61.27 E-value=1.9 Score=38.91 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=53.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTL 159 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l 159 (230)
..++||+.|++++++-++|..+++.+-.+..+.+. ..++.|+|.---....|+.+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 45679999999999999999999998777666554 3489999997777888888889887765544
No 197
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=59.06 E-value=16 Score=30.57 Aligned_cols=72 Identities=17% Similarity=0.336 Sum_probs=54.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC---------------EEEEEecCHHHHHHH----HHHhCC--c
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD---------------YAFVHFEDRQEAITA----MNELNG--Q 152 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg---------------~aFV~F~~~e~A~~A----i~~lng--~ 152 (230)
.++.|-+.|+..+++-..+...|-+||+|++|.++.+ ...+.|-+.+.+..- ++.|+. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 3566888999999999999999999999999999832 578889888775432 223332 2
Q ss_pred EecCcEeEEEEeC
Q psy1188 153 TVAGSTLEVSLAK 165 (230)
Q Consensus 153 ~i~g~~l~V~~a~ 165 (230)
.++...|.|.|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 5666777777766
No 198
>KOG4365|consensus
Probab=58.70 E-value=0.71 Score=40.34 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=59.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
+.|+..||...++++|.-+|.-||.|..+...+ -.+||+-.. .+|..+|..+.-..+.|..++|.++....
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 467888999999999999999999998887652 167777554 56788888888888999999999998655
Q ss_pred chh
Q psy1188 169 DKK 171 (230)
Q Consensus 169 ~~~ 171 (230)
.++
T Consensus 84 ~~r 86 (572)
T KOG4365|consen 84 EKR 86 (572)
T ss_pred hhh
Confidence 443
No 199
>KOG0226|consensus
Probab=55.48 E-value=5.5 Score=32.53 Aligned_cols=65 Identities=6% Similarity=0.051 Sum_probs=45.4
Q ss_pred EEEEeccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeC
Q psy1188 13 IVIFVNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRG 73 (230)
Q Consensus 13 ~~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~ 73 (230)
.-+-.+-.+||.+.|.-+++++-+-..|..|- .||+|....+...++.++ +++ .++.
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem--~gk--yVgs 259 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM--NGK--YVGS 259 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh--ccc--cccc
Confidence 33556677889999998888888877777655 789997655555555555 443 6777
Q ss_pred ceeeeecC
Q psy1188 74 CDIIVDWA 81 (230)
Q Consensus 74 ~~i~v~~a 81 (230)
+.|.+.-+
T Consensus 260 rpiklRkS 267 (290)
T KOG0226|consen 260 RPIKLRKS 267 (290)
T ss_pred chhHhhhh
Confidence 77766543
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=54.00 E-value=58 Score=26.89 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=45.2
Q ss_pred ceEEecchHHHHHHhhhhhc-CCCeeeeeCceeeeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeE
Q psy1188 45 KLLEYGLDKRIAGKLDDIFK-TGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE 123 (230)
Q Consensus 45 ~fv~~~~~~~~a~~~~~~~~-~~~~~~~~~~~i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~ 123 (230)
.++-++.|...+..+.+.+. ..+-..+.+--+++.+..-. .....|+|||+++|-.-+..++...-.+.
T Consensus 54 ~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~----------~~~~vVaNlPY~Isspii~kll~~~~~~~ 123 (259)
T COG0030 54 RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA----------QPYKVVANLPYNISSPILFKLLEEKFIIQ 123 (259)
T ss_pred eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc----------CCCEEEEcCCCcccHHHHHHHHhccCccc
Confidence 45566667788887777754 22222334555555554321 12367999999999999999998755543
Q ss_pred E
Q psy1188 124 R 124 (230)
Q Consensus 124 ~ 124 (230)
.
T Consensus 124 ~ 124 (259)
T COG0030 124 D 124 (259)
T ss_pred e
Confidence 3
No 201
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=53.20 E-value=63 Score=22.18 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=34.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc-------C-CCeEEEEEe-------------cC-EEEEEecCHHHHHHHHHH
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQ-------Y-GRVERVKRI-------------KD-YAFVHFEDRQEAITAMNE 148 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~-------~-G~i~~~~i~-------------rg-~aFV~F~~~e~A~~Ai~~ 148 (230)
.++|| |.++++++++.++.++ . |+|..+... +| |-++.|.-..++.+.++.
T Consensus 9 E~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 9 ETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 45777 7788888777765544 3 466666533 23 889999987777777654
No 202
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.78 E-value=20 Score=25.65 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=21.4
Q ss_pred CCHHHHHHHhhcCCCeEEEEEe-----cCEEEEEecC-HHHHHHHH
Q psy1188 107 CTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFED-RQEAITAM 146 (230)
Q Consensus 107 ~te~~L~~~F~~~G~i~~~~i~-----rg~aFV~F~~-~e~A~~Ai 146 (230)
.+.++|++.|+.|..++..-+. .+++.|.|.+ -.--..|+
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 3558899999999887533222 4699999995 33334444
No 203
>COG4371 Predicted membrane protein [Function unknown]
Probab=48.19 E-value=34 Score=28.03 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=5.3
Q ss_pred CCCCCCCCCCC
Q psy1188 220 LSSTRMGRGDY 230 (230)
Q Consensus 220 ~~~~~~g~g~~ 230 (230)
.++++|+.|||
T Consensus 78 Y~gg~Y~GGGf 88 (334)
T COG4371 78 YSGGGYSGGGF 88 (334)
T ss_pred CCCCCCCCCCc
Confidence 33455555554
No 204
>KOG1995|consensus
Probab=47.58 E-value=7.9 Score=33.07 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=46.8
Q ss_pred EeccceeEeecCccccccccccccccCCc---------------------------ceEEecchHHHHHHhhhhhcCCCe
Q psy1188 16 FVNVRKFTMAESSREAEEKPSSERTPDYT---------------------------KLLEYGLDKRIAGKLDDIFKTGKH 68 (230)
Q Consensus 16 ~~n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------------~fv~~~~~~~~a~~~~~~~~~~~~ 68 (230)
.....++||-.||..+++..+.++|.+++ +.|.|+ +..+|.++..-+...
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~-D~~~akaai~~~agk-- 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYE-DPPAAKAAIEWFAGK-- 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeec-Chhhhhhhhhhhccc--
Confidence 34456779999999999999999999988 677775 456666666665444
Q ss_pred eeeeCceeeeecCCCC
Q psy1188 69 LLSRGCDIIVDWADPQ 84 (230)
Q Consensus 69 ~~~~~~~i~v~~a~~~ 84 (230)
...+..|+|..+...
T Consensus 140 -df~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 140 -DFCGNTIKVSLAERR 154 (351)
T ss_pred -cccCCCchhhhhhhc
Confidence 566677777666433
No 205
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=46.61 E-value=16 Score=20.31 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHhhcCCC
Q psy1188 105 QYCTEEKLKEAFEQYGR 121 (230)
Q Consensus 105 ~~~te~~L~~~F~~~G~ 121 (230)
.++++++|++.|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47899999999987653
No 206
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=45.42 E-value=1.2e+02 Score=24.82 Aligned_cols=84 Identities=19% Similarity=0.234 Sum_probs=47.0
Q ss_pred cccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCCCccCCCCccEEEEe
Q psy1188 33 EKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVR 101 (230)
Q Consensus 33 e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~~~~~~~~~~~lfV~ 101 (230)
...+.|+....| ..+-++.+...+..+.+.+.....+.+ -..+.-.-...........++|+
T Consensus 31 ~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~v-------i~~D~l~~~~~~~~~~~~~~vv~ 103 (262)
T PF00398_consen 31 GDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEV-------INGDFLKWDLYDLLKNQPLLVVG 103 (262)
T ss_dssp TSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEE-------EES-TTTSCGGGHCSSSEEEEEE
T ss_pred CCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhccccee-------eecchhccccHHhhcCCceEEEE
Confidence 444566666666 445555566666666665442223332 22222211111111234568999
Q ss_pred cCCCCCCHHHHHHHhh--cCCCeE
Q psy1188 102 NLTQYCTEEKLKEAFE--QYGRVE 123 (230)
Q Consensus 102 nL~~~~te~~L~~~F~--~~G~i~ 123 (230)
|||++++..-|.+++. .||.+.
T Consensus 104 NlPy~is~~il~~ll~~~~~g~~~ 127 (262)
T PF00398_consen 104 NLPYNISSPILRKLLELYRFGRVR 127 (262)
T ss_dssp EETGTGHHHHHHHHHHHGGGCEEE
T ss_pred EecccchHHHHHHHhhcccccccc
Confidence 9999999999999887 455443
No 207
>KOG0862|consensus
Probab=45.40 E-value=13 Score=29.63 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=20.8
Q ss_pred HHHHHHh-hcCCCeEEEEEecCEEEEEecCH
Q psy1188 110 EKLKEAF-EQYGRVERVKRIKDYAFVHFEDR 139 (230)
Q Consensus 110 ~~L~~~F-~~~G~i~~~~i~rg~aFV~F~~~ 139 (230)
++|.+-| ..||+-..-.+.|.|+||+|.+-
T Consensus 89 edL~~EF~~~~~~~~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNIIQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhcccccCCccCCCeeEEehhHH
Confidence 5555555 45776544457799999999874
No 208
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=45.20 E-value=46 Score=28.48 Aligned_cols=58 Identities=12% Similarity=0.199 Sum_probs=36.1
Q ss_pred eEeecCcccccccc------ccccccCCc----------------------ceEEecchHHHHHHhhhhhcCCCeeeeeC
Q psy1188 22 FTMAESSREAEEKP------SSERTPDYT----------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRG 73 (230)
Q Consensus 22 ~~v~~l~~~~~e~~------l~~~f~~~g----------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~ 73 (230)
+||-.|+..+-.++ -.++|.||| -++.|..++++|....+. ++ -.++|
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v--Dg--s~~DG 192 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV--DG--SLLDG 192 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHh--cc--ccccC
Confidence 57777887665554 356788888 356666555555444333 22 36778
Q ss_pred ceeeeecCCC
Q psy1188 74 CDIIVDWADP 83 (230)
Q Consensus 74 ~~i~v~~a~~ 83 (230)
+.|+..+...
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 8888877643
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=45.07 E-value=39 Score=22.92 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=23.7
Q ss_pred EEEEecCHHHHHHHHHHhCCc--EecCcEeEEEEeC
Q psy1188 132 AFVHFEDRQEAITAMNELNGQ--TVAGSTLEVSLAK 165 (230)
Q Consensus 132 aFV~F~~~e~A~~Ai~~lng~--~i~g~~l~V~~a~ 165 (230)
|.|+|.+.+-|++-++. ..+ .+++..+.|..+-
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P 35 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSP 35 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEe
Confidence 68999999999999854 333 5567666665443
No 210
>KOG1855|consensus
Probab=43.80 E-value=9.9 Score=33.38 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=35.7
Q ss_pred ccceeEeecCccccccccccccccCCc--------------------------------ceEEecchHHHHHHhhhhhcC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT--------------------------------KLLEYGLDKRIAGKLDDIFKT 65 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------------------------~fv~~~~~~~~a~~~~~~~~~ 65 (230)
..+.|.+.|||-+-.-+.|.++|..+| ++|||+ ...+|.+|.+.+.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye-~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYE-EVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhh-hhHHHHHHHHhhch
Confidence 346678999998887788999999888 777885 45667777777644
No 211
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=42.71 E-value=20 Score=24.12 Aligned_cols=41 Identities=5% Similarity=0.003 Sum_probs=27.0
Q ss_pred eEeecCccccccccccccccCCc-----------ceEEecchHHHHHHhhhhh
Q psy1188 22 FTMAESSREAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIF 63 (230)
Q Consensus 22 ~~v~~l~~~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~ 63 (230)
+|--..|.+....||.+||+.|| |||... ..+.+..+...+
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~-~r~~~~~v~~~~ 62 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALH-NRDQAKVVMNTL 62 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEEEEEECTTEEEEEEC-CCHHHHHHHHHH
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEee-cHHHHHHHHHHh
Confidence 45555899999999999999998 888886 355555555444
No 212
>KOG1295|consensus
Probab=42.50 E-value=41 Score=29.19 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=42.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEe----------cCEEEEEecCHHHHHHHHHHhCCcEe
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGR-VERVKRI----------KDYAFVHFEDRQEAITAMNELNGQTV 154 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~-i~~~~i~----------rg~aFV~F~~~e~A~~Ai~~lng~~i 154 (230)
..+.|.+||+..++++|.+....|-. +...... ...+||.|...++...-.+..+|+++
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45789999999999988876665432 2222222 24789999999998888788888755
No 213
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=39.65 E-value=1.5e+02 Score=21.60 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=50.6
Q ss_pred EEEEecCCCC---CCHHHHHHHhhcCC-CeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 97 VLYVRNLTQY---CTEEKLKEAFEQYG-RVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 97 ~lfV~nL~~~---~te~~L~~~F~~~G-~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.|.|+..... .+-..+.+....-| .++++..-.+-.-|.|.+.++..+|.+.|...-=.+-.|-+..+.
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 4666655333 56678888888877 467777778899999999999999998887665455566655554
No 214
>KOG0921|consensus
Probab=38.35 E-value=46 Score=32.63 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=5.8
Q ss_pred CCCCCCCCCCC
Q psy1188 220 LSSTRMGRGDY 230 (230)
Q Consensus 220 ~~~~~~g~g~~ 230 (230)
+++|++|.|||
T Consensus 1198 ys~gGygsGGY 1208 (1282)
T KOG0921|consen 1198 YSGGGYGSGGY 1208 (1282)
T ss_pred CCCCCcCCCCC
Confidence 34455555555
No 215
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.20 E-value=1.2e+02 Score=20.29 Aligned_cols=51 Identities=22% Similarity=0.357 Sum_probs=37.5
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-CeEEEEEe---cC--EEEEEecCHHHHHHHHHH
Q psy1188 98 LYVRNLTQYCTEEKLKEAFEQ-YG-RVERVKRI---KD--YAFVHFEDRQEAITAMNE 148 (230)
Q Consensus 98 lfV~nL~~~~te~~L~~~F~~-~G-~i~~~~i~---rg--~aFV~F~~~e~A~~Ai~~ 148 (230)
-|+=-++.+.+..++++.++. || +|.+|+.+ .+ =|||++...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 334457889999999998887 55 56777655 33 699999998888776543
No 216
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=37.59 E-value=10 Score=24.21 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=26.7
Q ss_pred HHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhC
Q psy1188 110 EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 110 ~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~ln 150 (230)
+++.+.|..+..... +++=.+|..|.|.++|..++.++.
T Consensus 27 ~~v~~~~~~~~~f~k--~vkL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSK--IVKLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhh--hhhhhhccCCCCHHHHHHHHHHhh
Confidence 577777766554432 223359999999999888876653
No 217
>PF14893 PNMA: PNMA
Probab=36.97 E-value=1.1e+02 Score=26.36 Aligned_cols=71 Identities=20% Similarity=0.392 Sum_probs=40.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhc-CCCeEEEEEe-----c----CEEEEEecCHHHHHHHHHHhCCcEe--cCcEeEEE
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQ-YGRVERVKRI-----K----DYAFVHFEDRQEAITAMNELNGQTV--AGSTLEVS 162 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~~~i~-----r----g~aFV~F~~~e~A~~Ai~~lng~~i--~g~~l~V~ 162 (230)
-+.|-|.+||.+|+++++++.+.. .-.+-..+|. | --++|+|...-+-... -..| .|-+.+|-
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~i-----P~~i~g~gg~W~Vv 92 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLI-----PREIPGKGGPWRVV 92 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhC-----chhcCCCCCceEEE
Confidence 356889999999999998887653 2222233333 1 2678877643221111 2233 34577776
Q ss_pred EeCCCCch
Q psy1188 163 LAKPPSDK 170 (230)
Q Consensus 163 ~a~~~~~~ 170 (230)
+-.+..+.
T Consensus 93 ~~p~~~D~ 100 (331)
T PF14893_consen 93 FKPPAPDA 100 (331)
T ss_pred ecCCCCCH
Confidence 66554433
No 218
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.73 E-value=42 Score=21.52 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=22.1
Q ss_pred CEEEEEecCHHHHHHHHHHhCCcEecC
Q psy1188 130 DYAFVHFEDRQEAITAMNELNGQTVAG 156 (230)
Q Consensus 130 g~aFV~F~~~e~A~~Ai~~lng~~i~g 156 (230)
.+.+|.|.+..+|.+|-+.|+...+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 468999999999999988888765543
No 219
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=36.68 E-value=1.6e+02 Score=26.03 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=54.9
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHhhcC----CCeEEEEEe---------------------------------------
Q psy1188 93 SKVKVLYVRNLTQ-YCTEEKLKEAFEQY----GRVERVKRI--------------------------------------- 128 (230)
Q Consensus 93 ~~~~~lfV~nL~~-~~te~~L~~~F~~~----G~i~~~~i~--------------------------------------- 128 (230)
.++.+|-|-||.+ .+...+|..+|+.| |+|..|.|.
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 4567888889987 46668999998876 677777653
Q ss_pred ---------------cC-------------------EEEEEecCHHHHHHHHHHhCCcEecC--cEeEEEEe
Q psy1188 129 ---------------KD-------------------YAFVHFEDRQEAITAMNELNGQTVAG--STLEVSLA 164 (230)
Q Consensus 129 ---------------rg-------------------~aFV~F~~~e~A~~Ai~~lng~~i~g--~~l~V~~a 164 (230)
+| ||.|.+.+.+.++.....++|..+.. ..+-+.|-
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 01 89999999999999999999997754 44555543
No 220
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=33.67 E-value=32 Score=21.90 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=28.3
Q ss_pred CCCeEEEEEecCEEEEEecCH-HHH---HHHHHHhCC-c-EecCcEeEEEEeCCC
Q psy1188 119 YGRVERVKRIKDYAFVHFEDR-QEA---ITAMNELNG-Q-TVAGSTLEVSLAKPP 167 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~~-e~A---~~Ai~~lng-~-~i~g~~l~V~~a~~~ 167 (230)
.|.|+.....||||||.=.+- ++. ..++.. ++ . .-.|.++........
T Consensus 3 ~G~Vk~f~~~kGfGFI~~~~g~~dvfvH~s~~~~-~g~~~l~~G~~V~f~~~~~~ 56 (68)
T TIGR02381 3 IGIVKWFNNAKGFGFICPEGVDGDIFAHYSTIQM-DGYRTLKAGQKVQFEVVQGP 56 (68)
T ss_pred CeEEEEEeCCCCeEEEecCCCCccEEEEHHHhhh-cCCCCCCCCCEEEEEEEECC
Confidence 477777778899999976652 222 123322 23 2 235677777766643
No 221
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=32.56 E-value=35 Score=21.17 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=15.3
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|+.....||||||+=.+
T Consensus 2 ~G~Vk~~~~~kGfGFI~~~~ 21 (65)
T cd04458 2 TGTVKWFDDEKGFGFITPDD 21 (65)
T ss_pred cEEEEEEECCCCeEEEecCC
Confidence 36677667779999998766
No 222
>PRK15464 cold shock-like protein CspH; Provisional
Probab=32.52 E-value=31 Score=22.24 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=27.9
Q ss_pred CCCeEEEEEecCEEEEEecCH-HHH---HHHHHHhCCc--EecCcEeEEEEeCCC
Q psy1188 119 YGRVERVKRIKDYAFVHFEDR-QEA---ITAMNELNGQ--TVAGSTLEVSLAKPP 167 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~~-e~A---~~Ai~~lng~--~i~g~~l~V~~a~~~ 167 (230)
.|.|+.-.--||||||+=.+- ++. ..|+.. ++. ...|.+|..+....+
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~g~~DvFvH~s~l~~-~g~~~l~~G~~V~f~v~~~~ 59 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTP-RDAEVLIPGLRVEFCRVNGL 59 (70)
T ss_pred eEEEEEEECCCCeEEEccCCCCccEEEEehhehh-cCCCCCCCCCEEEEEEEECC
Confidence 367777777799999976552 222 233322 222 335677777776643
No 223
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=31.92 E-value=34 Score=21.29 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=15.3
Q ss_pred CCeEEEEEecCEEEEEecCHH
Q psy1188 120 GRVERVKRIKDYAFVHFEDRQ 140 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F~~~e 140 (230)
|.|......+|||||+-.+.+
T Consensus 3 G~V~~~~~~kgyGFI~~~~~~ 23 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITSDDGG 23 (66)
T ss_dssp EEEEEEETTTTEEEEEETTSS
T ss_pred EEEEEEECCCCceEEEEcccc
Confidence 566666666899999987643
No 224
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=31.59 E-value=1.2e+02 Score=19.72 Aligned_cols=37 Identities=11% Similarity=0.390 Sum_probs=28.4
Q ss_pred HhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCc
Q psy1188 115 AFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQ 152 (230)
Q Consensus 115 ~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~ 152 (230)
-..+||.|..+.-...|+.+ |-|.++++..++.|...
T Consensus 16 ~L~kfG~i~Y~Skk~kYvvl-Yvn~~~~e~~~~kl~~l 52 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMKYVVL-YVNEEDVEEIIEKLKKL 52 (71)
T ss_pred hHhhcccEEEEECCccEEEE-EECHHHHHHHHHHHhcC
Confidence 35789999888776677744 67888888888887654
No 225
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=31.35 E-value=38 Score=22.09 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=25.2
Q ss_pred CCeEEEEEecCEEEEEecCH-HHH---HHHHHHhCC--cEecCcEeEEEEeCCC
Q psy1188 120 GRVERVKRIKDYAFVHFEDR-QEA---ITAMNELNG--QTVAGSTLEVSLAKPP 167 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F~~~-e~A---~~Ai~~lng--~~i~g~~l~V~~a~~~ 167 (230)
|.|+.-.--||||||+=.+- +++ ..+|.. .+ ....|..+..++....
T Consensus 4 G~Vkwfn~~KGfGFI~~~~gg~dVFvH~s~i~~-~g~~~l~~G~~V~f~~~~~~ 56 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQM-DGYRTLKAGQSVQFDVHQGP 56 (74)
T ss_pred eEEEEEeCCCCeEEEeeCCCCccEEEEEeeccc-cCCCCCCCCCEEEEEEEECC
Confidence 67777777799999965431 111 112211 12 1335666776666643
No 226
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=31.07 E-value=35 Score=21.82 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=15.0
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|+.-.--||||||+=.+
T Consensus 5 ~G~Vk~f~~~kGyGFI~~~~ 24 (69)
T PRK09507 5 KGNVKWFNESKGFGFITPED 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 36777777779999997654
No 227
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=30.69 E-value=26 Score=25.72 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=39.4
Q ss_pred HHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 110 EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 110 ~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
..|..+....|.+.-..+-.++..+.|.+.+++.++++. ....++|..+.+..=.|
T Consensus 36 ~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 36 QELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSP 91 (153)
T ss_pred HHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcc
Confidence 344444455667766677789999999999999999853 33467777776665553
No 228
>PRK14998 cold shock-like protein CspD; Provisional
Probab=30.52 E-value=40 Score=21.88 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=26.7
Q ss_pred CCCeEEEEEecCEEEEEecCH-HHHH---HHHHHhCC--cEecCcEeEEEEeCCC
Q psy1188 119 YGRVERVKRIKDYAFVHFEDR-QEAI---TAMNELNG--QTVAGSTLEVSLAKPP 167 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~~-e~A~---~Ai~~lng--~~i~g~~l~V~~a~~~ 167 (230)
.|.|+.-.-.||||||+=.+- ++.- .+|.. ++ ....|.++..+.....
T Consensus 3 ~G~Vkwfn~~kGfGFI~~~~g~~dVFvH~s~l~~-~g~~~l~~G~~V~f~~~~~~ 56 (73)
T PRK14998 3 TGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQM-DGYRTLKAGQSVRFDVHQGP 56 (73)
T ss_pred CeEEEEEeCCCceEEEecCCCCccEEEEeeeecc-cCCCCCCCCCEEEEEEEECC
Confidence 367777777799999975542 1211 12221 22 2335667777766643
No 229
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.39 E-value=1.7e+02 Score=19.24 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=36.8
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-CeEEEEEe---cC--EEEEEecCHHHHHHHHH
Q psy1188 98 LYVRNLTQYCTEEKLKEAFEQ-YG-RVERVKRI---KD--YAFVHFEDRQEAITAMN 147 (230)
Q Consensus 98 lfV~nL~~~~te~~L~~~F~~-~G-~i~~~~i~---rg--~aFV~F~~~e~A~~Ai~ 147 (230)
-|+=.++.+.+..++++.++. |+ +|..|+.+ .+ =|||++...+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 445568889999999988887 55 56666654 23 59999998888776643
No 230
>PRK10943 cold shock-like protein CspC; Provisional
Probab=29.27 E-value=39 Score=21.61 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=27.0
Q ss_pred CCCeEEEEEecCEEEEEecCHH-HH---HHHHHHhCC-c-EecCcEeEEEEeCCC
Q psy1188 119 YGRVERVKRIKDYAFVHFEDRQ-EA---ITAMNELNG-Q-TVAGSTLEVSLAKPP 167 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~~e-~A---~~Ai~~lng-~-~i~g~~l~V~~a~~~ 167 (230)
-|.|+.-.--||||||+=.+-. +. ..|+.. .+ . ...|.++..+....+
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~-~g~~~l~~G~~V~f~~~~~~ 58 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPADGSKDVFVHFSAIQG-NGFKTLAEGQNVEFEIQDGQ 58 (69)
T ss_pred ceEEEEEeCCCCcEEEecCCCCeeEEEEhhHccc-cCCCCCCCCCEEEEEEEECC
Confidence 4677777777999999755421 21 223322 12 2 235677777766643
No 231
>PRK15463 cold shock-like protein CspF; Provisional
Probab=29.24 E-value=39 Score=21.75 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=27.8
Q ss_pred CCCeEEEEEecCEEEEEecCH-HHH---HHHHHHhCC-cEecCcEeEEEEeCCC
Q psy1188 119 YGRVERVKRIKDYAFVHFEDR-QEA---ITAMNELNG-QTVAGSTLEVSLAKPP 167 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~~-e~A---~~Ai~~lng-~~i~g~~l~V~~a~~~ 167 (230)
.|.|+.-.--||||||+=.+- ++. ..|+..-.. ..-.|..+..+....+
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~g~~DvFvH~sal~~~g~~~l~~G~~V~f~v~~~~ 59 (70)
T PRK15463 6 TGIVKTFDGKSGKGLITPSDGRKDVQVHISALNLRDAEELTTGLRVEFCRINGL 59 (70)
T ss_pred eEEEEEEeCCCceEEEecCCCCccEEEEehhhhhcCCCCCCCCCEEEEEEEECC
Confidence 477777777799999976542 221 133332111 2335677777766643
No 232
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.11 E-value=1.1e+02 Score=20.29 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=23.4
Q ss_pred CeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEe
Q psy1188 121 RVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTV 154 (230)
Q Consensus 121 ~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i 154 (230)
.|.++-.. +||-||+=.+.++...|++.+.+...
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 45555544 89999999999999999977766543
No 233
>KOG4849|consensus
Probab=28.82 E-value=37 Score=29.17 Aligned_cols=23 Identities=0% Similarity=-0.195 Sum_probs=19.4
Q ss_pred eEeecCccccccccccccccCCc
Q psy1188 22 FTMAESSREAEEKPSSERTPDYT 44 (230)
Q Consensus 22 ~~v~~l~~~~~e~~l~~~f~~~g 44 (230)
+||+||.|.+|++||.+....-|
T Consensus 83 ~YvGNL~W~TTD~DL~~A~~S~G 105 (498)
T KOG4849|consen 83 CYVGNLLWYTTDADLLKALQSTG 105 (498)
T ss_pred EEecceeEEeccHHHHHHHHhhh
Confidence 49999999999999888766655
No 234
>PRK09890 cold shock protein CspG; Provisional
Probab=27.43 E-value=42 Score=21.53 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=15.2
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|....--||||||+=.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK09890 6 TGLVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEECCCCcEEEecCC
Confidence 47777777779999997654
No 235
>smart00457 MACPF membrane-attack complex / perforin.
Probab=27.13 E-value=1.3e+02 Score=23.38 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.8
Q ss_pred EecCCCCCCHHHHHHHhhcCCC
Q psy1188 100 VRNLTQYCTEEKLKEAFEQYGR 121 (230)
Q Consensus 100 V~nL~~~~te~~L~~~F~~~G~ 121 (230)
+.+||...+..+...+|..||+
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGT 51 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGT 51 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCC
Confidence 4588999999999999999998
No 236
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=25.94 E-value=46 Score=21.30 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=14.5
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|+...--||||||+=.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK10354 6 TGIVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEeCCCCcEEEecCC
Confidence 46676666679999997543
No 237
>PRK02302 hypothetical protein; Provisional
Probab=24.82 E-value=1.7e+02 Score=19.88 Aligned_cols=48 Identities=13% Similarity=0.367 Sum_probs=33.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCc
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQ 152 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~ 152 (230)
.||+..+- +.+ -..+||.|..+.-...|+.+ |-|.++++..++.|...
T Consensus 11 IVyl~~~k------~~r-~LrkfG~I~Y~Skk~kYvvl-Yvn~~~~e~~~~kl~~l 58 (89)
T PRK02302 11 IVYLYYNR------DAR-KLSKYGDIVYHSKRSRYLVL-YVNKEDVEQKLEELSKL 58 (89)
T ss_pred EEEEeecH------hHH-HHhhcCcEEEEeccccEEEE-EECHHHHHHHHHHHhcC
Confidence 46665442 223 35789999888776667744 67888888888887654
No 238
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=23.83 E-value=2.4e+02 Score=19.02 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCC-CeEEEEEecC----EEEEEecCHHHHHHHHHHhCC
Q psy1188 109 EEKLKEAFEQYG-RVERVKRIKD----YAFVHFEDRQEAITAMNELNG 151 (230)
Q Consensus 109 e~~L~~~F~~~G-~i~~~~i~rg----~aFV~F~~~e~A~~Ai~~lng 151 (230)
.+.++++++..| +++++....| ...+++.|.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 356777888875 7888888876 778899999988887655443
No 239
>PRK12450 foldase protein PrsA; Reviewed
Probab=23.22 E-value=1.7e+02 Score=24.64 Aligned_cols=39 Identities=15% Similarity=0.444 Sum_probs=30.5
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhC
Q psy1188 106 YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 106 ~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~ln 150 (230)
.+|++++++++..|.+ .+.+ ..|.+.+.+.|+.+++.++
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~~----~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMTA----EIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCHHHHHHHHHHhCc--ccee----EEEEeCCHHHHHHHHHHHH
Confidence 4899999999998753 2222 3478899999999999986
No 240
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=22.88 E-value=1.9e+02 Score=18.83 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=22.8
Q ss_pred CeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEe
Q psy1188 121 RVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV 154 (230)
Q Consensus 121 ~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i 154 (230)
.|++++..++..++.|+..++-..|. +|.|..|
T Consensus 46 ~v~~~~~~~~~~i~~~~gi~~r~~Ae-~l~g~~l 78 (84)
T PF01782_consen 46 KVESVRPHGKSLIVKFEGIDDREAAE-ALRGCEL 78 (84)
T ss_dssp EEEEEEEETTEEEEEETT--SHHHHH-TTTT-EE
T ss_pred EEEEEEEeCCEEEEEEcCCCCHHHHH-hhCCCEE
Confidence 46667777889999999988888884 6666543
No 241
>PRK02886 hypothetical protein; Provisional
Probab=22.43 E-value=2e+02 Score=19.43 Aligned_cols=48 Identities=23% Similarity=0.487 Sum_probs=33.0
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCc
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQ 152 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~ 152 (230)
.||+.++- +++ -+.+||.|..+.-...|+.+ |-|.++++..++.|...
T Consensus 9 IVyl~~~k------~~r-~LrkyG~I~Y~Skr~kYvvl-Yvn~~~~e~~~~kl~~l 56 (87)
T PRK02886 9 IVWLHSLK------QAK-QLRKFGNVHYVSKRLKYAVL-YCDMEQVEDIMNKLSSL 56 (87)
T ss_pred EEEEeecH------hHH-HHhhcCcEEEEeccccEEEE-EECHHHHHHHHHHHhcC
Confidence 46665442 223 35789999888766667744 66888888888877765
No 242
>KOG0156|consensus
Probab=21.53 E-value=1.9e+02 Score=26.27 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=43.6
Q ss_pred EEEecCCCCC---CHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEe
Q psy1188 98 LYVRNLTQYC---TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTL 159 (230)
Q Consensus 98 lfV~nL~~~~---te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l 159 (230)
=+||||+.-. ....+.++=.+||+|-.+++-. .=.|.-.+.+.|+.|+.. |+..+.+|+.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~-~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS-VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC-ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 3578886433 3355666667899999776653 246777899999999966 8889999885
No 243
>KOG4213|consensus
Probab=21.17 E-value=72 Score=24.79 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=37.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC-CCeEEEEEe---------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQY-GRVERVKRI---------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~-G~i~~~~i~---------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
+++|.. .|++.|.++-..- |++..+... +|--||+|.+.+.|.+.++. +.....-..|...+
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 456665 4444444433222 677777654 46789999999999988755 33333334454444
No 244
>cd07052 BMC_like_1_repeat2 Bacterial Micro-Compartment (BMC)-like domain 1 repeat 2. BMC-like domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of the carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view. Proteins in this CD contain two tandem BMC domains. This CD includes repeat 2 (the second BMC domain of BMC like 1 proteins).
Probab=21.06 E-value=2.6e+02 Score=18.52 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=19.9
Q ss_pred CeEEEEEecCEEEEEec-CHHHHHHHHHH
Q psy1188 121 RVERVKRIKDYAFVHFE-DRQEAITAMNE 148 (230)
Q Consensus 121 ~i~~~~i~rg~aFV~F~-~~e~A~~Ai~~ 148 (230)
++.+++++-+++|+.+. ++.+.+.|+++
T Consensus 45 ~lv~v~~~Ggk~~~~ltGdva~V~~A~~a 73 (79)
T cd07052 45 TLVDVRMVGAFGRLYLSGTEADVRAARDA 73 (79)
T ss_pred eEEEEEEeccEEEEEEeecHHHHHHHHHH
Confidence 35667777889999988 66666666654
No 245
>KOG2187|consensus
Probab=20.82 E-value=46 Score=30.24 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=36.4
Q ss_pred cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCch
Q psy1188 129 KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 129 rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
.+|+++.|++.+.+.+|+..++|....+..+++..+......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~ 104 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGS 104 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccccc
Confidence 469999999999999999999999999988888887765443
No 246
>PHA01632 hypothetical protein
Probab=20.63 E-value=99 Score=18.96 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=16.6
Q ss_pred EEEecCCCCCCHHHHHHHhhc
Q psy1188 98 LYVRNLTQYCTEEKLKEAFEQ 118 (230)
Q Consensus 98 lfV~nL~~~~te~~L~~~F~~ 118 (230)
|.|..+|..-|+++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345688999999999987654
No 247
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.15 E-value=1.2e+02 Score=23.37 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHhhcCCCeEEEEEecC------------------------------------EEEEEe----cCHHHH
Q psy1188 103 LTQYCTEEKLKEAFEQYGRVERVKRIKD------------------------------------YAFVHF----EDRQEA 142 (230)
Q Consensus 103 L~~~~te~~L~~~F~~~G~i~~~~i~rg------------------------------------~aFV~F----~~~e~A 142 (230)
+....+.+-++..|.+||.+.++.++.| .-.|+| .-++.-
T Consensus 47 vh~~qtAk~wr~~~lqcG~~lS~n~iNGRpI~li~l~~Pl~v~~w~id~iELP~P~~K~YP~egWEHIEiVlP~~peel~ 126 (185)
T COG3102 47 VHQEQTAKRWRRGLLQCGELLSENLINGRPICLIKLHQPLQVAHWQIDIIELPYPKNKRYPHEGWEHIEIVLPGDPEELN 126 (185)
T ss_pred eCcHHHHHHHHHHHHHHHHHhhhhhcCCceEEEEEcCCcceecceEEEEEEccCCcCCCCCCcCceeEEEEcCCChHHHH
Confidence 3455566778888889998877654422 223332 235556
Q ss_pred HHHHHHhCCcEecCcEeEEEEeCCCCch
Q psy1188 143 ITAMNELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 143 ~~Ai~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
.+|+..++...+..--|.|+.+.|+.+-
T Consensus 127 ~~~~~l~~~~~l~~~gi~vk~ssp~ge~ 154 (185)
T COG3102 127 ARALALLNDEFLWELGISVKLSSPQGEH 154 (185)
T ss_pred HHHHhhcchhhcccCceEEEecCCCCcc
Confidence 6677677766555555888888877654
Done!