Query psy1188
Match_columns 230
No_of_seqs 269 out of 2424
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 21:18:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.3E-29 4.6E-34 201.6 11.6 142 19-167 15-181 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 8.5E-28 2.9E-32 182.8 15.4 140 20-166 1-166 (166)
3 1l3k_A Heterogeneous nuclear r 100.0 8.7E-28 3E-32 187.9 13.5 148 17-170 11-186 (196)
4 1fje_B Nucleolin RBD12, protei 99.9 4.3E-27 1.5E-31 180.9 13.1 142 18-167 12-174 (175)
5 1b7f_A Protein (SXL-lethal pro 99.9 7.7E-27 2.6E-31 178.0 13.9 137 19-164 3-168 (168)
6 2yh0_A Splicing factor U2AF 65 99.9 1E-26 3.5E-31 182.0 13.9 146 19-169 4-196 (198)
7 2qfj_A FBP-interacting repress 99.9 3.2E-27 1.1E-31 187.4 11.1 145 19-167 28-205 (216)
8 2g4b_A Splicing factor U2AF 65 99.9 1.1E-26 3.7E-31 178.0 12.7 139 17-165 2-172 (172)
9 1fxl_A Paraneoplastic encephal 99.9 1.9E-26 6.5E-31 175.4 12.7 136 20-164 3-167 (167)
10 2adc_A Polypyrimidine tract-bi 99.9 2.8E-26 9.5E-31 184.3 13.7 146 18-167 33-228 (229)
11 3pgw_A U1-A; protein-RNA compl 99.9 4.8E-26 1.6E-30 188.0 15.4 143 19-165 9-281 (282)
12 3smz_A Protein raver-1, ribonu 99.9 3.3E-26 1.1E-30 189.2 14.4 145 20-170 96-267 (284)
13 1qm9_A Polypyrimidine tract-bi 99.9 2E-26 6.8E-31 180.8 12.0 145 19-167 3-197 (198)
14 3tyt_A Heterogeneous nuclear r 99.9 3.4E-26 1.1E-30 180.9 12.5 141 20-164 5-204 (205)
15 2cjk_A Nuclear polyadenylated 99.9 4.3E-27 1.5E-31 179.4 6.9 138 18-167 2-166 (167)
16 3nmr_A Cugbp ELAV-like family 99.9 4.1E-26 1.4E-30 175.0 11.7 143 18-165 2-175 (175)
17 2ghp_A U4/U6 snRNA-associated 99.9 1.5E-25 5.1E-30 186.0 14.1 153 10-167 108-291 (292)
18 3sde_A Paraspeckle component 1 99.9 3.1E-25 1E-29 181.6 9.8 138 16-168 19-180 (261)
19 3smz_A Protein raver-1, ribonu 99.9 3.2E-24 1.1E-28 177.2 14.6 135 18-167 21-175 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 3.8E-24 1.3E-28 177.5 12.2 136 17-169 39-199 (292)
21 4fxv_A ELAV-like protein 1; RN 99.9 1.5E-22 5.3E-27 141.7 10.5 73 94-166 18-98 (99)
22 2dgu_A Heterogeneous nuclear r 99.9 3.1E-21 1.1E-25 135.9 13.4 78 93-170 9-86 (103)
23 2cpd_A Apobec-1 stimulating pr 99.9 3.2E-21 1.1E-25 134.8 12.9 82 87-168 7-90 (99)
24 2i2y_A Fusion protein consists 99.9 9E-22 3.1E-26 147.9 10.7 120 45-168 16-149 (150)
25 3r27_A HnRNP L, heterogeneous 99.9 1.6E-21 5.5E-26 135.8 10.6 76 92-167 18-97 (100)
26 4f25_A Polyadenylate-binding p 99.9 1.6E-21 5.5E-26 140.2 10.9 76 95-170 5-86 (115)
27 2dgt_A RNA-binding protein 30; 99.9 3.2E-21 1.1E-25 133.0 11.8 76 93-168 8-83 (92)
28 2dnq_A RNA-binding protein 4B; 99.9 2.9E-21 9.9E-26 132.7 11.1 77 93-169 6-82 (90)
29 1sjq_A Polypyrimidine tract-bi 99.9 1.2E-21 4E-26 137.7 9.1 77 94-170 15-95 (105)
30 2dnp_A RNA-binding protein 14; 99.9 2.5E-21 8.4E-26 133.0 10.5 76 94-169 8-83 (90)
31 3s8s_A Histone-lysine N-methyl 99.9 3.4E-21 1.2E-25 137.4 10.5 74 94-167 5-86 (110)
32 1wf1_A RNA-binding protein RAL 99.9 4.2E-21 1.4E-25 136.8 10.8 95 72-168 6-101 (110)
33 2xnq_A Nuclear polyadenylated 99.9 6.6E-21 2.3E-25 132.8 11.6 76 93-168 20-96 (97)
34 1x4d_A Matrin 3; structural ge 99.9 3.4E-21 1.2E-25 135.1 9.7 75 93-167 13-92 (102)
35 2kn4_A Immunoglobulin G-bindin 99.8 2.3E-20 7.9E-25 141.3 14.8 123 45-169 16-152 (158)
36 2jvo_A Nucleolar protein 3; nu 99.8 5E-21 1.7E-25 136.1 10.4 79 92-170 28-106 (108)
37 2cq1_A PTB-like protein L; RRM 99.8 1.7E-20 5.7E-25 131.6 12.8 78 93-170 13-94 (101)
38 2dgx_A KIAA0430 protein; RRM d 99.8 8.3E-21 2.8E-25 132.0 11.1 76 94-169 8-92 (96)
39 2wbr_A GW182, gawky, LD47780P; 99.8 4.6E-21 1.6E-25 129.2 9.3 71 95-165 7-79 (89)
40 3md1_A Nuclear and cytoplasmic 99.8 1.3E-20 4.5E-25 127.2 11.0 73 96-168 2-82 (83)
41 4a8x_A RNA-binding protein wit 99.8 1.7E-20 6E-25 128.0 11.6 76 94-169 3-87 (88)
42 2cq3_A RNA-binding protein 9; 99.8 3.6E-20 1.2E-24 130.3 13.4 77 93-169 13-95 (103)
43 2kvi_A Nuclear polyadenylated 99.8 5.3E-21 1.8E-25 133.0 8.9 78 93-170 8-86 (96)
44 1wex_A Hypothetical protein (r 99.8 1.2E-20 4E-25 133.1 10.7 77 92-168 12-92 (104)
45 2lxi_A RNA-binding protein 10; 99.8 1.6E-21 5.4E-26 134.4 6.0 75 96-170 2-86 (91)
46 2ad9_A Polypyrimidine tract-bi 99.8 1E-20 3.6E-25 136.0 10.2 78 93-170 29-110 (119)
47 1x4c_A Splicing factor, argini 99.8 2.8E-20 9.6E-25 132.1 11.9 75 94-168 14-94 (108)
48 2do4_A Squamous cell carcinoma 99.8 3.4E-20 1.2E-24 129.7 12.1 77 93-169 15-98 (100)
49 3bs9_A Nucleolysin TIA-1 isofo 99.8 2E-20 6.7E-25 127.5 10.5 74 94-167 5-86 (87)
50 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.4E-20 1.5E-24 129.9 12.5 78 93-170 13-96 (103)
51 3q2s_C Cleavage and polyadenyl 99.8 1.2E-21 4.2E-26 157.2 5.0 74 94-167 67-150 (229)
52 1why_A Hypothetical protein ri 99.8 3E-20 1E-24 129.3 11.5 75 94-168 16-94 (97)
53 2d9p_A Polyadenylate-binding p 99.8 2.4E-20 8.3E-25 131.2 10.8 78 93-170 13-96 (103)
54 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.3E-20 1.1E-24 140.2 12.1 77 93-169 37-121 (156)
55 2cpj_A Non-POU domain-containi 99.8 2.6E-20 8.8E-25 130.2 10.7 77 92-168 12-90 (99)
56 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.6E-20 1.2E-24 125.6 11.0 72 94-165 6-85 (85)
57 2x1f_A MRNA 3'-END-processing 99.8 4.7E-20 1.6E-24 128.1 11.7 78 94-171 1-86 (96)
58 1whw_A Hypothetical protein ri 99.8 3.9E-20 1.3E-24 129.2 11.3 76 94-169 7-90 (99)
59 1x4a_A Splicing factor, argini 99.8 5.4E-20 1.9E-24 130.8 12.2 76 93-168 20-100 (109)
60 2err_A Ataxin-2-binding protei 99.8 2.5E-20 8.4E-25 132.7 10.0 76 92-167 26-107 (109)
61 2dnz_A Probable RNA-binding pr 99.8 4.1E-20 1.4E-24 128.0 10.8 75 94-168 4-86 (95)
62 2dnh_A Bruno-like 5, RNA bindi 99.8 5E-20 1.7E-24 130.0 11.4 78 93-170 13-100 (105)
63 2dgo_A Cytotoxic granule-assoc 99.8 8.2E-20 2.8E-24 131.0 12.3 79 92-170 12-98 (115)
64 2ytc_A PRE-mRNA-splicing facto 99.8 6.1E-20 2.1E-24 124.5 11.0 72 94-165 11-85 (85)
65 1u6f_A Tcubp1, RNA-binding pro 99.8 1.1E-19 3.9E-24 134.6 13.3 76 93-168 40-123 (139)
66 2cqc_A Arginine/serine-rich sp 99.8 8.2E-20 2.8E-24 126.4 11.8 75 92-166 12-94 (95)
67 1oo0_B CG8781-PA, drosophila Y 99.8 4.5E-20 1.5E-24 131.3 10.7 78 92-169 23-108 (110)
68 2lkz_A RNA-binding protein 5; 99.8 1.7E-20 5.6E-25 130.1 8.1 73 94-166 8-94 (95)
69 2e5h_A Zinc finger CCHC-type a 99.8 9E-20 3.1E-24 126.0 11.8 73 93-165 14-94 (94)
70 2dgs_A DAZ-associated protein 99.8 6.6E-20 2.3E-24 128.0 11.2 76 94-170 9-92 (99)
71 2jrs_A RNA-binding protein 39; 99.8 5.9E-20 2E-24 130.5 11.1 77 92-168 23-107 (108)
72 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.5E-20 1.2E-24 141.5 10.5 80 92-171 69-156 (165)
73 1x5u_A Splicing factor 3B subu 99.8 5.5E-20 1.9E-24 129.8 10.8 77 93-169 13-97 (105)
74 1x5t_A Splicing factor 3B subu 99.8 2.6E-20 8.9E-25 129.3 8.9 77 94-170 4-89 (96)
75 1x4f_A Matrin 3; structural ge 99.8 1.8E-20 6E-25 133.4 8.1 78 92-169 22-104 (112)
76 1p27_B RNA-binding protein 8A; 99.8 3.8E-20 1.3E-24 130.8 9.8 77 92-168 20-104 (106)
77 2la4_A Nuclear and cytoplasmic 99.8 2.8E-20 9.5E-25 130.4 9.0 74 94-167 26-101 (101)
78 2jvr_A Nucleolar protein 3; RN 99.8 2.4E-20 8.4E-25 132.8 8.8 74 94-167 27-105 (111)
79 2cpz_A CUG triplet repeat RNA- 99.8 5E-20 1.7E-24 132.2 10.4 77 93-169 23-107 (115)
80 2cpf_A RNA binding motif prote 99.8 5.2E-20 1.8E-24 128.3 10.1 75 94-168 4-89 (98)
81 1x4h_A RNA-binding protein 28; 99.8 9.8E-20 3.4E-24 129.7 11.8 78 93-170 13-104 (111)
82 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.3E-20 1.5E-24 129.6 9.8 78 93-170 10-95 (102)
83 2e5j_A Methenyltetrahydrofolat 99.8 5.5E-20 1.9E-24 128.0 10.2 76 93-169 17-96 (97)
84 1nu4_A U1A RNA binding domain; 99.8 8.9E-20 3E-24 126.8 11.1 77 94-170 7-92 (97)
85 1x4g_A Nucleolysin TIAR; struc 99.8 6.9E-20 2.4E-24 130.2 10.6 77 93-169 23-101 (109)
86 2a3j_A U1 small nuclear ribonu 99.8 3.3E-20 1.1E-24 135.3 8.9 79 93-171 27-114 (127)
87 2cq0_A Eukaryotic translation 99.8 1.5E-19 5.1E-24 127.1 12.0 78 93-170 13-98 (103)
88 2cqh_A IGF-II mRNA-binding pro 99.8 4.1E-20 1.4E-24 127.6 8.7 76 94-169 7-85 (93)
89 2dnm_A SRP46 splicing factor; 99.8 6.2E-20 2.1E-24 129.1 9.8 77 93-169 11-95 (103)
90 3ex7_B RNA-binding protein 8A; 99.8 4.4E-20 1.5E-24 134.6 9.2 80 91-170 18-105 (126)
91 3lqv_A PRE-mRNA branch site pr 99.8 7.7E-20 2.6E-24 131.2 10.2 77 94-170 7-88 (115)
92 1x5s_A Cold-inducible RNA-bind 99.8 4.5E-20 1.5E-24 129.6 8.8 76 94-169 11-94 (102)
93 2cqd_A RNA-binding region cont 99.8 5E-19 1.7E-23 127.1 14.3 75 92-167 14-96 (116)
94 2fy1_A RNA-binding motif prote 99.8 2.2E-19 7.4E-24 129.2 12.3 75 94-168 6-87 (116)
95 1p1t_A Cleavage stimulation fa 99.8 3.3E-20 1.1E-24 130.7 7.6 77 94-170 7-91 (104)
96 2dgv_A HnRNP M, heterogeneous 99.8 8.4E-20 2.9E-24 125.7 9.6 77 93-169 6-88 (92)
97 1wi8_A EIF-4B, eukaryotic tran 99.8 2.2E-19 7.7E-24 126.5 11.7 76 93-170 13-97 (104)
98 2cph_A RNA binding motif prote 99.8 1.9E-19 6.6E-24 127.3 11.3 78 93-170 13-100 (107)
99 2ywk_A Putative RNA-binding pr 99.8 1.4E-19 4.7E-24 125.4 10.2 74 93-166 14-94 (95)
100 2la6_A RNA-binding protein FUS 99.8 1.4E-19 4.9E-24 126.3 10.2 73 93-165 11-99 (99)
101 1whx_A Hypothetical protein ri 99.8 8.2E-20 2.8E-24 130.4 9.0 74 94-167 9-84 (111)
102 3ulh_A THO complex subunit 4; 99.8 2.4E-19 8.3E-24 126.9 11.3 73 93-165 27-106 (107)
103 3p5t_L Cleavage and polyadenyl 99.8 1.5E-20 5E-25 129.2 4.7 74 96-169 2-85 (90)
104 2khc_A Testis-specific RNP-typ 99.8 1.9E-19 6.5E-24 129.7 10.7 74 92-165 37-118 (118)
105 2dgp_A Bruno-like 4, RNA bindi 99.8 1.4E-19 4.9E-24 127.9 9.6 77 93-169 11-98 (106)
106 2dng_A Eukaryotic translation 99.8 4.4E-19 1.5E-23 124.7 11.9 75 93-169 13-95 (103)
107 1x5p_A Negative elongation fac 99.8 6.3E-19 2.2E-23 122.6 12.4 75 93-169 13-89 (97)
108 2cpe_A RNA-binding protein EWS 99.8 2.4E-19 8.3E-24 128.1 10.5 77 93-169 13-105 (113)
109 3n9u_C Cleavage and polyadenyl 99.8 1.2E-19 4E-24 137.2 9.2 74 94-167 54-137 (156)
110 2kxn_B Transformer-2 protein h 99.8 1.3E-19 4.5E-24 132.7 9.1 76 93-168 44-127 (129)
111 2do0_A HnRNP M, heterogeneous 99.8 1.4E-18 4.7E-23 124.4 14.2 74 94-167 14-94 (114)
112 3ns6_A Eukaryotic translation 99.8 6.7E-20 2.3E-24 128.4 7.0 74 94-167 5-93 (100)
113 2lea_A Serine/arginine-rich sp 99.8 2.8E-20 9.5E-25 137.4 5.2 117 44-170 6-130 (135)
114 2div_A TRNA selenocysteine ass 99.8 1.7E-19 5.9E-24 125.9 9.0 75 94-168 8-95 (99)
115 2cq2_A Hypothetical protein LO 99.8 1.7E-19 5.7E-24 128.5 8.7 76 93-168 23-107 (114)
116 3ucg_A Polyadenylate-binding p 99.8 3.4E-19 1.2E-23 121.8 9.8 72 95-167 6-85 (89)
117 2cqp_A RNA-binding protein 12; 99.8 2.3E-19 7.9E-24 125.0 9.0 74 94-167 14-95 (98)
118 1s79_A Lupus LA protein; RRM, 99.8 1.7E-19 5.8E-24 127.0 8.3 72 94-166 10-88 (103)
119 2e5i_A Heterogeneous nuclear r 99.8 9.8E-19 3.3E-23 126.7 12.4 76 94-169 24-104 (124)
120 2rs2_A Musashi-1, RNA-binding 99.8 2.9E-19 1E-23 127.1 9.5 77 93-170 23-107 (109)
121 2nlw_A Eukaryotic translation 99.8 3.5E-19 1.2E-23 125.8 9.8 75 94-168 14-101 (105)
122 2diu_A KIAA0430 protein; struc 99.8 2.7E-19 9.3E-24 121.7 8.7 75 94-170 7-87 (96)
123 2dhg_A TRNA selenocysteine ass 99.8 1.8E-19 6.1E-24 126.9 8.0 77 94-170 8-93 (104)
124 3zzy_A Polypyrimidine tract-bi 99.8 6E-19 2E-23 128.4 10.9 76 94-169 27-108 (130)
125 2cpi_A CCR4-NOT transcription 99.8 2.2E-19 7.4E-24 128.1 8.5 75 94-168 14-102 (111)
126 2hvz_A Splicing factor, argini 99.8 1.3E-19 4.5E-24 127.0 6.8 73 96-168 1-76 (101)
127 2fc9_A NCL protein; structure 99.8 6.5E-19 2.2E-23 123.4 10.2 76 93-168 13-92 (101)
128 2dis_A Unnamed protein product 99.8 3.3E-19 1.1E-23 126.6 8.6 76 94-169 7-94 (109)
129 2dh8_A DAZ-associated protein 99.8 3.6E-19 1.2E-23 125.6 8.6 76 93-169 14-97 (105)
130 3egn_A RNA-binding protein 40; 99.8 2.8E-19 9.7E-24 133.2 8.5 78 94-171 44-134 (143)
131 2cq4_A RNA binding motif prote 99.8 1.5E-19 5.3E-24 129.4 6.7 73 94-167 24-104 (114)
132 1x5o_A RNA binding motif, sing 99.8 1.2E-18 4E-23 124.7 11.4 76 93-168 23-113 (114)
133 3s7r_A Heterogeneous nuclear r 99.8 1.1E-18 3.8E-23 118.8 10.4 70 94-164 10-87 (87)
134 2kt5_A RNA and export factor-b 99.8 1.6E-18 5.3E-23 126.0 11.8 77 92-168 32-115 (124)
135 1wg1_A KIAA1579 protein, homol 99.8 6.9E-19 2.4E-23 120.2 9.2 73 94-167 4-78 (88)
136 3beg_B Splicing factor, argini 99.8 3.3E-19 1.1E-23 128.0 7.9 73 94-166 15-93 (115)
137 2dgw_A Probable RNA-binding pr 99.8 1.4E-18 4.7E-23 119.4 10.7 73 94-168 9-88 (91)
138 2ek1_A RNA-binding protein 12; 99.8 2.4E-19 8.3E-24 124.1 6.8 73 94-166 14-94 (95)
139 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.9E-19 6.5E-24 126.0 6.3 74 93-168 17-99 (100)
140 2cpx_A Hypothetical protein FL 99.8 6.1E-19 2.1E-23 126.4 9.0 78 93-170 23-108 (115)
141 2db1_A Heterogeneous nuclear r 99.8 1.8E-18 6.1E-23 124.7 11.2 71 94-165 16-96 (118)
142 2fc8_A NCL protein; structure 99.8 1.4E-18 4.6E-23 121.9 10.3 77 93-169 13-94 (102)
143 1fjc_A Nucleolin RBD2, protein 99.8 8.4E-19 2.9E-23 121.6 9.0 77 93-169 14-93 (96)
144 1x4e_A RNA binding motif, sing 99.8 1.4E-19 4.9E-24 122.7 4.9 72 94-165 4-83 (85)
145 1x4b_A Heterogeneous nuclear r 99.8 6.3E-19 2.2E-23 126.6 8.6 75 94-169 26-108 (116)
146 1sjr_A Polypyrimidine tract-bi 99.8 8.9E-19 3.1E-23 132.2 9.6 75 94-168 45-125 (164)
147 2cqg_A TDP-43, TAR DNA-binding 99.8 3.5E-18 1.2E-22 120.1 11.9 75 93-169 13-95 (103)
148 2cpy_A RNA-binding protein 12; 99.8 3.6E-18 1.2E-22 122.3 12.1 73 93-166 13-93 (114)
149 3d2w_A TAR DNA-binding protein 99.8 1.8E-18 6.1E-23 118.5 9.8 73 94-170 10-87 (89)
150 2mss_A Protein (musashi1); RNA 99.8 3.1E-19 1.1E-23 118.2 5.4 67 97-164 1-75 (75)
151 2m2b_A RNA-binding protein 10; 99.8 2.7E-19 9.1E-24 131.4 5.6 75 93-168 21-109 (131)
152 2jwn_A Embryonic polyadenylate 99.8 1.6E-18 5.5E-23 125.9 9.6 74 94-168 35-116 (124)
153 2krb_A Eukaryotic translation 99.8 4E-19 1.4E-23 119.5 5.8 67 96-162 2-81 (81)
154 2e44_A Insulin-like growth fac 99.8 3E-18 1E-22 118.8 10.4 75 94-168 14-93 (96)
155 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.1E-18 1.1E-22 126.7 11.2 73 92-164 60-140 (140)
156 2ki2_A SS-DNA binding protein 99.8 2.1E-19 7E-24 123.3 3.5 72 96-168 2-81 (90)
157 1wg5_A Heterogeneous nuclear r 99.8 4.4E-18 1.5E-22 119.9 10.4 73 94-167 14-94 (104)
158 1fj7_A Nucleolin RBD1, protein 99.8 5E-19 1.7E-23 124.0 5.4 75 94-170 16-98 (101)
159 3tyt_A Heterogeneous nuclear r 99.8 4.3E-18 1.5E-22 134.3 11.1 74 94-167 3-80 (205)
160 1wel_A RNA-binding protein 12; 99.8 6.4E-19 2.2E-23 128.1 5.8 73 93-166 23-103 (124)
161 2e5g_A U6 snRNA-specific termi 99.8 3.6E-18 1.2E-22 118.1 9.3 74 94-168 7-83 (94)
162 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.7E-19 2.3E-23 117.0 5.3 67 97-164 2-76 (77)
163 2bz2_A Negative elongation fac 99.8 3.2E-18 1.1E-22 123.9 9.2 76 93-170 37-114 (121)
164 2lmi_A GRSF-1, G-rich sequence 99.8 1.7E-18 5.9E-23 122.6 7.3 72 94-166 10-91 (107)
165 2hzc_A Splicing factor U2AF 65 99.7 7E-18 2.4E-22 114.7 9.2 69 94-163 5-86 (87)
166 1wez_A HnRNP H', FTP-3, hetero 99.7 3.2E-18 1.1E-22 120.2 7.7 72 94-167 14-92 (102)
167 2hgl_A HNRPF protein, heteroge 99.7 5.1E-18 1.7E-22 125.1 8.9 71 94-165 43-123 (136)
168 3pgw_S U1-70K; protein-RNA com 99.7 2.1E-17 7E-22 144.2 14.0 77 93-169 100-184 (437)
169 2lcw_A RNA-binding protein FUS 99.6 1.5E-19 5.1E-24 129.9 0.0 75 94-168 6-96 (116)
170 2dnn_A RNA-binding protein 12; 99.7 1.2E-17 4.2E-22 118.5 9.8 70 94-165 15-91 (109)
171 3pgw_A U1-A; protein-RNA compl 99.7 8.5E-17 2.9E-21 132.4 15.5 77 93-169 7-92 (282)
172 1wf0_A TDP-43, TAR DNA-binding 99.7 4.3E-18 1.5E-22 116.2 6.2 74 94-169 4-80 (88)
173 3u1l_A PRE-mRNA-splicing facto 99.7 9.9E-18 3.4E-22 134.4 9.0 98 70-168 110-230 (240)
174 1iqt_A AUF1, heterogeneous nuc 99.7 1.9E-18 6.5E-23 114.3 3.9 67 97-164 1-75 (75)
175 2f3j_A RNA and export factor b 99.7 1.7E-17 5.8E-22 127.9 9.7 76 93-168 86-168 (177)
176 4f02_A Polyadenylate-binding p 99.7 3.2E-17 1.1E-21 129.9 11.1 76 94-169 14-97 (213)
177 1b7f_A Protein (SXL-lethal pro 99.7 3.8E-17 1.3E-21 124.0 11.0 76 94-169 2-85 (168)
178 1fxl_A Paraneoplastic encephal 99.7 5.5E-17 1.9E-21 122.8 11.2 75 95-169 2-84 (167)
179 2xs2_A Deleted in azoospermia- 99.7 9.5E-18 3.2E-22 117.6 6.2 74 94-169 8-88 (102)
180 2dha_A FLJ20171 protein; RRM d 99.7 1.1E-17 3.9E-22 121.2 6.5 71 94-165 22-103 (123)
181 2voo_A Lupus LA protein; RNA-b 99.7 1.1E-16 3.6E-21 125.1 11.1 103 67-170 77-190 (193)
182 2hgn_A Heterogeneous nuclear r 99.7 5.8E-18 2E-22 125.3 3.3 73 94-168 45-124 (139)
183 3md3_A Nuclear and cytoplasmic 99.7 8.2E-17 2.8E-21 121.7 9.6 73 96-168 1-80 (166)
184 2hgm_A HNRPF protein, heteroge 99.7 6.6E-17 2.3E-21 117.4 7.4 70 94-165 41-119 (126)
185 2adc_A Polypyrimidine tract-bi 99.7 1.2E-16 4.1E-21 128.0 9.2 76 93-168 32-111 (229)
186 2dit_A HIV TAT specific factor 99.7 6.1E-16 2.1E-20 110.3 11.5 77 93-169 13-104 (112)
187 3sde_A Paraspeckle component 1 99.7 3.6E-16 1.2E-20 127.6 11.6 77 91-167 18-96 (261)
188 1l3k_A Heterogeneous nuclear r 99.7 3.1E-16 1E-20 122.0 10.3 75 93-168 11-93 (196)
189 2pe8_A Splicing factor 45; RRM 99.7 6.5E-16 2.2E-20 108.8 10.4 74 93-166 6-93 (105)
190 2qfj_A FBP-interacting repress 99.7 6E-16 2E-20 122.2 11.3 77 94-170 27-111 (216)
191 2j8a_A Histone-lysine N-methyl 99.7 3.8E-16 1.3E-20 112.2 8.9 73 96-168 3-97 (136)
192 2dnl_A Cytoplasmic polyadenyla 99.7 1.9E-16 6.6E-21 113.3 7.4 72 94-168 7-89 (114)
193 1qm9_A Polypyrimidine tract-bi 99.7 1.6E-16 5.5E-21 124.1 7.4 74 95-168 3-80 (198)
194 2g4b_A Splicing factor U2AF 65 99.6 1.5E-15 5.3E-20 115.6 9.9 74 94-168 3-89 (172)
195 3nmr_A Cugbp ELAV-like family 99.6 1.5E-15 5.1E-20 115.8 9.4 75 94-168 2-89 (175)
196 2yh0_A Splicing factor U2AF 65 99.6 2.4E-15 8.3E-20 117.0 9.7 74 94-168 3-89 (198)
197 2cjk_A Nuclear polyadenylated 99.6 1.9E-15 6.6E-20 114.5 8.4 72 94-167 2-81 (167)
198 1fje_B Nucleolin RBD12, protei 99.6 6.5E-16 2.2E-20 118.2 5.1 76 93-169 11-93 (175)
199 3tht_A Alkylated DNA repair pr 99.6 4.1E-15 1.4E-19 125.2 10.0 74 92-165 15-97 (345)
200 3v4m_A Splicing factor U2AF 65 99.6 7.1E-15 2.4E-19 103.5 9.3 73 94-166 4-96 (105)
201 3ue2_A Poly(U)-binding-splicin 99.6 2.1E-14 7.2E-19 103.1 9.9 73 94-166 19-108 (118)
202 1jmt_A Splicing factor U2AF 35 99.6 1.8E-15 6E-20 106.5 4.0 65 100-164 20-103 (104)
203 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.3E-14 4.3E-19 101.2 8.2 63 104-168 26-91 (100)
204 3s6e_A RNA-binding protein 39; 99.5 1.8E-13 6.3E-18 97.5 9.6 72 94-165 6-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.5 2.3E-13 7.9E-18 97.4 9.7 79 92-170 15-99 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.5 2.1E-13 7.2E-18 91.9 8.3 73 94-167 6-86 (91)
207 4f25_A Polyadenylate-binding p 99.4 4.7E-14 1.6E-18 100.9 4.2 89 19-111 5-113 (115)
208 1ufw_A Synaptojanin 2; RNP dom 99.3 1.5E-11 5.2E-16 83.2 7.5 72 94-166 14-94 (95)
209 2hvz_A Splicing factor, argini 99.0 4.2E-11 1.4E-15 83.2 1.8 81 20-104 1-100 (101)
210 3lqv_A PRE-mRNA branch site pr 99.0 2.2E-11 7.6E-16 86.7 0.0 86 19-121 8-109 (115)
211 3dxb_A Thioredoxin N-terminall 99.0 1.1E-09 3.6E-14 86.9 7.4 59 107-165 141-211 (222)
212 4fxv_A ELAV-like protein 1; RN 99.0 2.9E-10 9.8E-15 78.9 3.6 60 20-83 20-98 (99)
213 1sjq_A Polypyrimidine tract-bi 99.0 2.5E-10 8.5E-15 79.8 2.9 69 18-88 15-96 (105)
214 2lkz_A RNA-binding protein 5; 99.0 6.8E-10 2.3E-14 76.4 5.0 65 18-83 8-94 (95)
215 1x4d_A Matrin 3; structural ge 98.9 6.5E-10 2.2E-14 77.4 4.4 66 19-86 15-94 (102)
216 2cq1_A PTB-like protein L; RRM 98.9 1.2E-09 4.3E-14 75.9 5.1 66 20-87 16-94 (101)
217 3r27_A HnRNP L, heterogeneous 98.9 7.4E-10 2.5E-14 76.7 3.7 64 20-85 22-98 (100)
218 2lxi_A RNA-binding protein 10; 98.9 6.2E-10 2.1E-14 75.9 2.7 66 20-88 2-87 (91)
219 1wex_A Hypothetical protein (r 98.9 1.2E-09 4.1E-14 76.4 4.2 66 20-87 16-94 (104)
220 2ad9_A Polypyrimidine tract-bi 98.9 9.2E-10 3.1E-14 78.8 3.3 67 19-87 31-110 (119)
221 1x4f_A Matrin 3; structural ge 98.9 1.3E-09 4.3E-14 77.2 3.5 66 19-86 25-104 (112)
222 2dnq_A RNA-binding protein 4B; 98.8 8E-09 2.7E-13 70.0 4.8 66 18-87 7-83 (90)
223 2cqh_A IGF-II mRNA-binding pro 98.7 7E-09 2.4E-13 70.7 3.9 67 18-87 7-86 (93)
224 2dgt_A RNA-binding protein 30; 98.7 1.1E-08 3.6E-13 69.6 4.8 66 18-87 9-85 (92)
225 2cq3_A RNA-binding protein 9; 98.7 1.5E-08 5.2E-13 70.3 5.5 67 18-88 14-97 (103)
226 1x4a_A Splicing factor, argini 98.7 1.1E-08 3.8E-13 71.8 4.8 66 18-87 21-102 (109)
227 2cq0_A Eukaryotic translation 98.7 1.8E-08 6.1E-13 69.9 5.7 67 17-87 13-98 (103)
228 3md1_A Nuclear and cytoplasmic 98.7 1.2E-08 4E-13 67.9 4.4 62 20-85 2-82 (83)
229 2dgu_A Heterogeneous nuclear r 98.7 8.9E-09 3E-13 71.6 4.0 66 18-87 10-86 (103)
230 2d9p_A Polyadenylate-binding p 98.7 1.7E-08 5.7E-13 70.1 5.3 67 17-87 13-96 (103)
231 2dnp_A RNA-binding protein 14; 98.7 9.9E-09 3.4E-13 69.5 3.9 65 18-86 8-83 (90)
232 2cpz_A CUG triplet repeat RNA- 98.7 1.5E-08 5.1E-13 71.9 4.8 66 18-87 24-108 (115)
233 3bs9_A Nucleolysin TIA-1 isofo 98.7 8.4E-09 2.9E-13 69.2 3.3 63 18-84 5-86 (87)
234 2fc9_A NCL protein; structure 98.7 2.7E-08 9.1E-13 68.8 5.8 66 18-87 14-94 (101)
235 2cpj_A Non-POU domain-containi 98.7 1.2E-08 4.2E-13 70.3 4.0 66 17-86 13-91 (99)
236 2dnz_A Probable RNA-binding pr 98.7 1.8E-08 6.3E-13 68.7 4.8 66 18-87 4-88 (95)
237 2wbr_A GW182, gawky, LD47780P; 98.7 6.6E-09 2.3E-13 69.8 2.3 59 19-81 7-78 (89)
238 2cpd_A Apobec-1 stimulating pr 98.7 2.8E-08 9.6E-13 68.4 5.6 65 18-86 14-91 (99)
239 3s8s_A Histone-lysine N-methyl 98.7 1.4E-08 4.9E-13 71.6 4.2 62 19-84 6-86 (110)
240 2cqi_A Nucleolysin TIAR; RNA r 98.7 1.7E-08 5.7E-13 70.1 4.4 66 18-87 14-96 (103)
241 1whw_A Hypothetical protein ri 98.7 2.4E-08 8.2E-13 68.7 5.1 66 18-87 7-91 (99)
242 2dgs_A DAZ-associated protein 98.7 2.3E-08 7.8E-13 68.9 5.0 65 18-87 9-92 (99)
243 2la4_A Nuclear and cytoplasmic 98.7 9.9E-09 3.4E-13 71.0 3.1 62 19-84 27-101 (101)
244 2cqb_A Peptidyl-prolyl CIS-tra 98.7 2.3E-08 7.7E-13 69.3 4.9 66 18-87 11-95 (102)
245 1why_A Hypothetical protein ri 98.7 1.5E-08 5E-13 69.6 3.9 64 19-86 17-95 (97)
246 2j76_E EIF-4B, EIF4B, eukaryot 98.7 1.7E-08 5.9E-13 69.8 4.2 77 4-85 4-99 (100)
247 2dgo_A Cytotoxic granule-assoc 98.7 2.6E-08 8.9E-13 70.5 5.2 66 18-87 14-98 (115)
248 2do4_A Squamous cell carcinoma 98.7 2.3E-08 7.7E-13 69.0 4.7 65 18-86 16-98 (100)
249 2fc8_A NCL protein; structure 98.7 2.3E-08 7.9E-13 69.2 4.8 67 17-87 13-95 (102)
250 2l9w_A U4/U6 snRNA-associated- 98.7 1.8E-07 6.2E-12 64.5 9.0 71 95-165 21-98 (117)
251 4a8x_A RNA-binding protein wit 98.7 1.7E-08 5.9E-13 67.8 3.9 64 18-85 3-86 (88)
252 1x4c_A Splicing factor, argini 98.6 3.7E-08 1.3E-12 69.0 5.7 66 18-87 14-96 (108)
253 1x4g_A Nucleolysin TIAR; struc 98.6 2E-08 6.7E-13 70.5 4.2 66 18-87 24-102 (109)
254 3mdf_A Peptidyl-prolyl CIS-tra 98.6 1.8E-08 6.2E-13 67.2 3.8 61 18-82 6-85 (85)
255 2dnm_A SRP46 splicing factor; 98.6 1.7E-08 5.8E-13 70.1 3.7 66 18-87 12-96 (103)
256 1x5u_A Splicing factor 3B subu 98.6 1.8E-08 6.2E-13 70.1 3.7 67 17-87 13-98 (105)
257 2ek1_A RNA-binding protein 12; 98.6 2.6E-08 8.7E-13 68.0 4.4 62 18-83 14-94 (95)
258 2dis_A Unnamed protein product 98.6 1.5E-08 5E-13 71.1 3.2 70 19-90 8-98 (109)
259 2e5j_A Methenyltetrahydrofolat 98.6 1.4E-08 4.6E-13 69.8 2.9 64 18-85 18-95 (97)
260 2cpi_A CCR4-NOT transcription 98.6 3.5E-08 1.2E-12 69.5 5.0 67 16-86 12-103 (111)
261 2fy1_A RNA-binding motif prote 98.6 2.6E-08 8.8E-13 70.9 4.4 66 18-87 6-89 (116)
262 2dgv_A HnRNP M, heterogeneous 98.6 1.7E-08 5.9E-13 68.4 3.3 66 18-87 7-89 (92)
263 2x1f_A MRNA 3'-END-processing 98.6 2.2E-08 7.6E-13 68.6 3.9 63 20-86 3-84 (96)
264 2xnq_A Nuclear polyadenylated 98.6 2.4E-08 8.1E-13 68.7 4.0 66 15-84 18-95 (97)
265 1x4h_A RNA-binding protein 28; 98.6 3.8E-08 1.3E-12 69.1 5.2 69 18-87 14-104 (111)
266 2jrs_A RNA-binding protein 39; 98.6 2.2E-08 7.6E-13 70.3 3.9 65 17-85 24-107 (108)
267 2jvo_A Nucleolar protein 3; nu 98.6 2.7E-08 9.1E-13 69.9 4.2 65 17-85 29-104 (108)
268 2dgx_A KIAA0430 protein; RRM d 98.6 2.3E-08 7.8E-13 68.6 3.8 66 18-87 8-93 (96)
269 2e5g_A U6 snRNA-specific termi 98.6 3.5E-08 1.2E-12 67.3 4.7 65 18-87 7-85 (94)
270 1wf0_A TDP-43, TAR DNA-binding 98.6 5.2E-08 1.8E-12 65.6 5.5 64 18-87 4-81 (88)
271 2ytc_A PRE-mRNA-splicing facto 98.6 1.8E-08 6.3E-13 67.2 3.1 62 18-82 11-85 (85)
272 2cqp_A RNA-binding protein 12; 98.6 3.4E-08 1.1E-12 67.8 4.5 63 18-84 14-95 (98)
273 2e5h_A Zinc finger CCHC-type a 98.6 2.3E-08 7.8E-13 68.1 3.5 61 18-82 15-94 (94)
274 2err_A Ataxin-2-binding protei 98.6 2.4E-08 8.3E-13 70.2 3.7 63 18-84 28-107 (109)
275 2dng_A Eukaryotic translation 98.6 6E-08 2.1E-12 67.3 5.6 66 17-87 13-96 (103)
276 1whx_A Hypothetical protein ri 98.6 1.4E-08 4.8E-13 71.7 2.4 62 19-84 10-84 (111)
277 1x5t_A Splicing factor 3B subu 98.6 3.5E-08 1.2E-12 67.4 4.4 66 18-87 4-89 (96)
278 3zzy_A Polypyrimidine tract-bi 98.6 3.6E-08 1.2E-12 71.4 4.5 67 17-87 26-109 (130)
279 2cpf_A RNA binding motif prote 98.6 4.4E-08 1.5E-12 67.2 4.7 66 18-87 4-91 (98)
280 1x5s_A Cold-inducible RNA-bind 98.6 1.5E-08 5.2E-13 70.1 2.3 66 18-87 11-95 (102)
281 1p27_B RNA-binding protein 8A; 98.6 1.9E-08 6.4E-13 70.2 2.8 63 19-85 23-104 (106)
282 2dnh_A Bruno-like 5, RNA bindi 98.6 4.2E-08 1.4E-12 68.2 4.5 66 18-87 14-100 (105)
283 3p5t_L Cleavage and polyadenyl 98.6 1.2E-08 4.2E-13 69.1 1.5 63 20-86 2-85 (90)
284 2kvi_A Nuclear polyadenylated 98.6 2E-08 6.7E-13 68.9 2.5 66 18-87 9-86 (96)
285 1wf1_A RNA-binding protein RAL 98.6 3.4E-08 1.2E-12 69.4 3.7 63 20-86 28-102 (110)
286 2ywk_A Putative RNA-binding pr 98.6 4E-08 1.4E-12 67.0 3.8 62 18-83 15-94 (95)
287 1fjc_A Nucleolin RBD2, protein 98.6 6.5E-08 2.2E-12 66.1 4.8 65 18-86 15-93 (96)
288 3ucg_A Polyadenylate-binding p 98.6 4.4E-08 1.5E-12 65.9 3.8 62 18-84 5-85 (89)
289 1x4b_A Heterogeneous nuclear r 98.6 4.7E-08 1.6E-12 69.3 4.1 66 17-87 25-109 (116)
290 3d2w_A TAR DNA-binding protein 98.6 5.4E-08 1.9E-12 65.8 4.2 63 17-85 9-85 (89)
291 2ki2_A SS-DNA binding protein 98.6 1.5E-08 5.1E-13 68.5 1.3 63 19-86 1-82 (90)
292 2cph_A RNA binding motif prote 98.5 6.5E-08 2.2E-12 67.4 4.5 67 18-87 14-100 (107)
293 2cqc_A Arginine/serine-rich sp 98.5 4.8E-08 1.6E-12 66.6 3.8 62 18-83 14-94 (95)
294 2do0_A HnRNP M, heterogeneous 98.5 8.5E-08 2.9E-12 67.7 5.2 63 19-85 15-95 (114)
295 2cqd_A RNA-binding region cont 98.5 6E-08 2E-12 68.8 4.4 65 18-87 16-99 (116)
296 1oo0_B CG8781-PA, drosophila Y 98.5 3.7E-08 1.3E-12 69.2 3.2 64 18-85 25-107 (110)
297 2dh8_A DAZ-associated protein 98.5 3.3E-08 1.1E-12 68.8 3.0 66 17-87 14-98 (105)
298 1sjr_A Polypyrimidine tract-bi 98.5 2.3E-08 7.8E-13 75.2 2.2 66 18-87 45-127 (164)
299 1nu4_A U1A RNA binding domain; 98.5 5.8E-08 2E-12 66.5 4.1 63 19-85 8-90 (97)
300 1wi8_A EIF-4B, eukaryotic tran 98.5 9.3E-08 3.2E-12 66.4 5.2 66 17-87 13-97 (104)
301 1fj7_A Nucleolin RBD1, protein 98.5 3E-08 1E-12 68.5 2.6 64 18-86 16-97 (101)
302 2cpx_A Hypothetical protein FL 98.5 4.3E-08 1.5E-12 69.4 3.3 65 19-87 25-108 (115)
303 2dgp_A Bruno-like 4, RNA bindi 98.5 5.1E-08 1.7E-12 67.9 3.6 65 18-86 12-98 (106)
304 3s7r_A Heterogeneous nuclear r 98.5 5E-08 1.7E-12 65.4 3.4 60 17-81 9-87 (87)
305 2e44_A Insulin-like growth fac 98.5 3.5E-08 1.2E-12 67.5 2.6 64 18-85 14-93 (96)
306 2lea_A Serine/arginine-rich sp 98.5 4.7E-08 1.6E-12 71.5 3.4 67 17-87 45-130 (135)
307 2rs2_A Musashi-1, RNA-binding 98.5 8.5E-08 2.9E-12 67.4 4.6 67 15-86 21-106 (109)
308 1p1t_A Cleavage stimulation fa 98.5 3.4E-08 1.2E-12 68.5 2.5 65 18-86 7-90 (104)
309 2jvr_A Nucleolar protein 3; RN 98.5 4.3E-08 1.5E-12 69.2 3.0 63 18-84 27-105 (111)
310 2e5i_A Heterogeneous nuclear r 98.5 8.1E-08 2.8E-12 69.1 4.4 64 20-87 26-105 (124)
311 2khc_A Testis-specific RNP-typ 98.5 4.6E-08 1.6E-12 69.5 3.1 61 18-82 39-118 (118)
312 1h2v_Z 20 kDa nuclear CAP bind 98.5 5.8E-08 2E-12 72.6 3.7 65 18-86 38-121 (156)
313 2div_A TRNA selenocysteine ass 98.5 4.8E-08 1.7E-12 67.2 3.0 65 18-86 8-96 (99)
314 2kxn_B Transformer-2 protein h 98.5 4.1E-08 1.4E-12 71.2 2.8 64 18-85 45-127 (129)
315 3ex7_B RNA-binding protein 8A; 98.5 4.2E-08 1.4E-12 70.6 2.7 65 19-87 22-105 (126)
316 2mss_A Protein (musashi1); RNA 98.5 3.3E-08 1.1E-12 64.4 1.8 56 21-81 1-75 (75)
317 3ulh_A THO complex subunit 4; 98.5 6.6E-08 2.3E-12 67.4 3.4 61 18-82 28-106 (107)
318 1u6f_A Tcubp1, RNA-binding pro 98.5 7.2E-08 2.5E-12 70.6 3.6 66 18-87 41-125 (139)
319 2i2y_A Fusion protein consists 98.5 5.5E-08 1.9E-12 72.2 3.0 64 18-85 72-149 (150)
320 1uaw_A Mouse-musashi-1; RNP-ty 98.5 4.4E-08 1.5E-12 64.0 2.2 57 20-81 1-76 (77)
321 2cpe_A RNA-binding protein EWS 98.5 1.8E-07 6.2E-12 65.9 5.3 66 18-87 14-106 (113)
322 2cqg_A TDP-43, TAR DNA-binding 98.5 1.8E-07 6.3E-12 64.7 5.1 64 18-87 14-96 (103)
323 1wez_A HnRNP H', FTP-3, hetero 98.5 8.9E-08 3E-12 66.5 3.4 64 18-86 14-94 (102)
324 2m2b_A RNA-binding protein 10; 98.5 5.7E-08 1.9E-12 70.6 2.3 67 18-86 22-110 (131)
325 2dhg_A TRNA selenocysteine ass 98.5 8.4E-08 2.9E-12 66.6 3.1 66 18-87 8-93 (104)
326 3ns6_A Eukaryotic translation 98.4 4.2E-08 1.5E-12 67.8 1.5 61 19-83 6-92 (100)
327 1x5o_A RNA binding motif, sing 98.4 1.8E-07 6.1E-12 66.0 4.5 64 17-84 23-112 (114)
328 2dgw_A Probable RNA-binding pr 98.4 1.8E-07 6E-12 63.3 4.3 63 18-85 9-88 (91)
329 1wg1_A KIAA1579 protein, homol 98.4 1.7E-07 6E-12 63.0 4.1 64 18-85 4-79 (88)
330 2diu_A KIAA0430 protein; struc 98.4 2.2E-07 7.4E-12 63.0 4.5 62 22-87 12-87 (96)
331 1x4e_A RNA binding motif, sing 98.4 5.5E-08 1.9E-12 64.9 1.5 61 18-82 4-83 (85)
332 1s79_A Lupus LA protein; RRM, 98.4 6.2E-08 2.1E-12 67.5 1.7 60 18-82 10-87 (103)
333 2jwn_A Embryonic polyadenylate 98.4 1.3E-07 4.4E-12 67.8 3.4 63 18-85 35-116 (124)
334 2a3j_A U1 small nuclear ribonu 98.4 7.9E-08 2.7E-12 69.5 2.2 63 19-85 29-111 (127)
335 1wg5_A Heterogeneous nuclear r 98.4 1.5E-07 5.1E-12 65.5 3.5 63 18-85 14-95 (104)
336 1wel_A RNA-binding protein 12; 98.4 1.1E-07 3.6E-12 68.4 2.8 62 17-83 23-103 (124)
337 2kt5_A RNA and export factor-b 98.4 2.5E-07 8.4E-12 66.4 4.7 66 18-87 34-117 (124)
338 2kn4_A Immunoglobulin G-bindin 98.4 1.5E-07 5.1E-12 70.4 3.6 66 18-87 69-153 (158)
339 2cpy_A RNA-binding protein 12; 98.4 1.5E-07 5.3E-12 66.5 3.4 63 17-84 13-94 (114)
340 3n9u_C Cleavage and polyadenyl 98.4 8.7E-08 3E-12 71.8 2.3 63 18-84 54-137 (156)
341 2cq4_A RNA binding motif prote 98.4 1.2E-07 4.2E-12 66.9 2.7 62 18-84 24-104 (114)
342 3beg_B Splicing factor, argini 98.4 2E-07 6.7E-12 66.1 3.5 62 19-84 16-94 (115)
343 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.4 2.3E-07 7.7E-12 67.8 3.9 60 18-81 62-140 (140)
344 1rk8_A CG8781-PA, CG8781-PA pr 98.4 1.8E-07 6.1E-12 70.6 3.0 64 19-86 72-154 (165)
345 2nlw_A Eukaryotic translation 98.4 2.3E-07 8E-12 64.6 3.4 64 18-85 14-101 (105)
346 1iqt_A AUF1, heterogeneous nuc 98.3 6E-08 2.1E-12 63.1 0.2 56 21-81 1-75 (75)
347 2db1_A Heterogeneous nuclear r 98.3 3.5E-07 1.2E-11 65.1 4.2 61 18-83 16-97 (118)
348 1x5p_A Negative elongation fac 98.3 6.9E-07 2.4E-11 61.1 5.3 64 18-87 14-90 (97)
349 3egn_A RNA-binding protein 40; 98.3 2.6E-07 8.8E-12 68.0 3.3 64 19-86 45-132 (143)
350 2la6_A RNA-binding protein FUS 98.3 3.2E-07 1.1E-11 63.0 3.4 61 18-82 12-99 (99)
351 1wey_A Calcipressin 1; structu 98.3 2E-06 6.8E-11 59.1 6.9 72 96-167 6-84 (104)
352 2hgn_A Heterogeneous nuclear r 98.3 2.2E-07 7.6E-12 68.2 2.3 65 17-86 44-125 (139)
353 2cq2_A Hypothetical protein LO 98.3 3.5E-07 1.2E-11 64.7 2.8 61 20-84 26-106 (114)
354 2hgl_A HNRPF protein, heteroge 98.3 6.8E-07 2.3E-11 65.3 4.4 61 18-83 43-124 (136)
355 2lmi_A GRSF-1, G-rich sequence 98.3 3.7E-07 1.3E-11 63.7 2.6 61 18-83 10-91 (107)
356 2dnn_A RNA-binding protein 12; 98.2 6.2E-07 2.1E-11 63.0 3.6 61 18-83 15-92 (109)
357 3u1l_A PRE-mRNA-splicing facto 98.2 4.6E-07 1.6E-11 72.4 3.2 69 17-87 132-232 (240)
358 2j8a_A Histone-lysine N-methyl 98.2 3.8E-07 1.3E-11 65.5 2.2 64 19-82 2-94 (136)
359 3q2s_C Cleavage and polyadenyl 98.2 2.4E-07 8.2E-12 73.8 1.2 63 17-83 66-149 (229)
360 2krb_A Eukaryotic translation 98.2 3.1E-07 1E-11 60.7 1.5 55 20-78 2-80 (81)
361 2xs2_A Deleted in azoospermia- 98.2 2.4E-07 8.4E-12 64.0 0.9 63 18-86 8-88 (102)
362 3pgw_S U1-70K; protein-RNA com 98.2 5.1E-07 1.8E-11 78.6 3.1 64 18-85 101-183 (437)
363 2f3j_A RNA and export factor b 98.2 4.3E-07 1.5E-11 69.4 2.1 63 19-85 88-168 (177)
364 2lcw_A RNA-binding protein FUS 97.5 1.9E-07 6.6E-12 66.1 0.0 66 18-87 6-98 (116)
365 2hzc_A Splicing factor U2AF 65 98.2 7.7E-07 2.6E-11 59.4 2.9 58 18-80 5-86 (87)
366 2dhx_A Poly (ADP-ribose) polym 98.2 2.4E-05 8.1E-10 53.5 9.8 75 94-169 7-86 (104)
367 2dha_A FLJ20171 protein; RRM d 98.1 6.4E-07 2.2E-11 64.3 1.8 60 18-82 22-103 (123)
368 2bz2_A Negative elongation fac 98.1 1.5E-06 5.3E-11 62.1 3.7 63 18-86 38-113 (121)
369 2hgm_A HNRPF protein, heteroge 98.1 8.1E-07 2.8E-11 64.0 1.5 61 18-83 41-120 (126)
370 1uw4_A UPF3X; nonsense mediate 98.1 3.5E-05 1.2E-09 51.9 9.3 70 96-165 2-86 (91)
371 2voo_A Lupus LA protein; RNA-b 98.0 2.3E-06 8E-11 66.2 3.2 61 19-84 109-187 (193)
372 2dnl_A Cytoplasmic polyadenyla 98.0 6.3E-06 2.2E-10 58.1 4.1 58 18-81 7-85 (114)
373 1whv_A Poly(A)-specific ribonu 97.7 0.00017 5.7E-09 48.7 7.9 54 95-150 16-70 (100)
374 3ctr_A Poly(A)-specific ribonu 97.6 0.00013 4.3E-09 49.5 5.8 53 96-150 7-60 (101)
375 2dit_A HIV TAT specific factor 97.5 0.00012 3.9E-09 51.3 4.7 52 32-87 39-105 (112)
376 2l08_A Regulator of nonsense t 97.5 0.00026 8.9E-09 48.0 6.1 71 95-165 9-94 (97)
377 1owx_A Lupus LA protein, SS-B, 97.4 7E-05 2.4E-09 53.2 3.0 58 22-80 21-92 (121)
378 1wwh_A Nucleoporin 35, nucleop 97.4 0.0011 3.7E-08 46.7 8.6 69 95-165 24-95 (119)
379 3tht_A Alkylated DNA repair pr 97.3 8.5E-05 2.9E-09 62.4 2.4 65 16-82 14-97 (345)
380 2pe8_A Splicing factor 45; RRM 97.0 0.00069 2.3E-08 46.9 3.9 67 10-83 7-93 (105)
381 1jmt_A Splicing factor U2AF 35 96.9 0.00016 5.5E-09 50.0 0.3 55 23-81 19-103 (104)
382 2d9o_A DNAJ (HSP40) homolog, s 96.9 0.00072 2.5E-08 46.4 3.5 52 29-86 27-92 (100)
383 3p3d_A Nucleoporin 53; structu 96.8 0.002 6.8E-08 46.0 5.0 67 97-165 9-97 (132)
384 3pq1_A Poly(A) RNA polymerase; 96.5 0.0013 4.5E-08 57.1 3.3 53 95-148 53-108 (464)
385 3v4m_A Splicing factor U2AF 65 96.5 0.00077 2.6E-08 46.6 1.4 51 29-83 25-96 (105)
386 2dnr_A Synaptojanin-1; RRM dom 96.2 0.0052 1.8E-07 41.0 4.0 47 34-85 30-87 (91)
387 2dhx_A Poly (ADP-ribose) polym 95.6 0.0087 3E-07 40.8 3.0 75 20-108 9-99 (104)
388 3ue2_A Poly(U)-binding-splicin 95.3 0.011 3.8E-07 41.6 3.0 66 10-82 19-107 (118)
389 3s6e_A RNA-binding protein 39; 95.2 0.008 2.7E-07 42.1 1.9 47 32-82 30-91 (114)
390 3d45_A Poly(A)-specific ribonu 94.3 0.22 7.6E-06 43.8 9.4 56 95-151 440-495 (507)
391 1ufw_A Synaptojanin 2; RNP dom 93.9 0.028 9.7E-07 37.7 2.2 45 34-83 39-94 (95)
392 2l9w_A U4/U6 snRNA-associated- 93.1 0.053 1.8E-06 37.4 2.5 58 18-79 20-95 (117)
393 1wey_A Calcipressin 1; structu 91.8 0.31 1.1E-05 33.2 5.0 63 19-85 5-85 (104)
394 2g0c_A ATP-dependent RNA helic 90.9 0.62 2.1E-05 29.5 5.7 68 97-165 2-75 (76)
395 3dxb_A Thioredoxin N-terminall 87.3 0.24 8.2E-06 38.3 1.9 48 31-82 141-211 (222)
396 3ts2_A Protein LIN-28 homolog 73.4 0.61 2.1E-05 34.0 -0.3 28 110-137 2-29 (148)
397 4eyt_A Telomerase associated p 69.5 21 0.00071 23.4 8.1 73 95-167 12-91 (129)
398 1uw4_A UPF3X; nonsense mediate 67.0 4.5 0.00015 26.7 2.9 26 19-44 1-26 (91)
399 1whv_A Poly(A)-specific ribonu 66.9 2.6 8.7E-05 28.3 1.7 42 21-63 17-69 (100)
400 3ctr_A Poly(A)-specific ribonu 62.8 2.8 9.7E-05 28.2 1.3 41 21-62 7-58 (101)
401 2e5p_A Protein PHF1, PHD finge 57.5 5.1 0.00018 24.6 1.7 20 120-139 28-47 (68)
402 2m0o_A PHD finger protein 1; t 49.1 8.2 0.00028 24.4 1.7 20 120-139 45-64 (79)
403 2l08_A Regulator of nonsense t 46.5 6 0.0002 26.4 0.8 26 20-45 10-35 (97)
404 3tqs_A Ribosomal RNA small sub 43.2 68 0.0023 25.0 6.7 31 98-128 99-129 (255)
405 3fut_A Dimethyladenosine trans 42.8 50 0.0017 26.1 5.9 29 97-126 112-140 (271)
406 2e5q_A PHD finger protein 19; 42.8 4.2 0.00014 24.6 -0.4 20 120-139 26-45 (63)
407 2eqj_A Metal-response element- 42.7 12 0.00041 23.0 1.7 20 120-139 32-51 (66)
408 4hcz_A PHD finger protein 1; p 38.9 15 0.00053 21.8 1.7 20 120-139 22-41 (58)
409 2w7a_A LINE-1 ORF1P; RNA-bindi 34.6 80 0.0027 21.0 4.9 68 95-162 3-98 (100)
410 3cam_A Cold-shock domain famil 32.7 17 0.00058 22.2 1.2 20 119-138 3-22 (67)
411 1c9o_A CSPB, cold-shock protei 32.4 17 0.0006 22.0 1.2 20 119-138 3-22 (66)
412 3a0j_A Cold shock protein; OB- 30.6 19 0.00066 22.4 1.2 20 119-138 3-22 (73)
413 1cqm_A Ribosomal protein S6; a 30.0 1.2E+02 0.004 19.9 5.2 61 97-161 6-88 (101)
414 2od0_A Hypothetical protein VP 29.9 36 0.0012 22.6 2.7 23 107-129 4-26 (105)
415 1g6p_A Cold shock protein TMCS 29.9 20 0.0007 21.7 1.2 19 120-138 3-21 (66)
416 4e8u_A Putative uncharacterize 29.8 97 0.0033 22.8 5.1 50 97-146 14-80 (172)
417 2k5n_A Putative cold-shock pro 29.0 26 0.00088 21.9 1.6 20 119-138 4-23 (74)
418 3lpe_A Putative transcription 27.5 1.3E+02 0.0043 19.4 5.6 31 122-152 40-73 (92)
419 3uzu_A Ribosomal RNA small sub 27.1 28 0.00094 27.7 1.9 32 97-128 116-147 (279)
420 1h95_A CSD, Y-box binding prot 27.0 24 0.00083 22.3 1.2 20 119-138 10-29 (79)
421 2kcm_A Cold shock domain famil 26.9 30 0.001 21.6 1.7 19 120-138 3-21 (74)
422 2yko_A LINE-1 ORF1P; RNA-bindi 26.4 1.5E+02 0.0052 22.9 5.9 71 95-165 52-150 (233)
423 3zzp_A TS9, ribosomal protein 25.5 1E+02 0.0034 19.3 4.0 64 42-119 5-68 (77)
424 3pq1_A Poly(A) RNA polymerase; 25.1 15 0.00052 31.8 -0.0 31 20-51 54-98 (464)
425 3aqq_A Calcium-regulated heat 23.7 34 0.0012 24.6 1.6 20 119-138 64-83 (147)
426 3ulj_A LIN28B, DNA-binding pro 23.2 31 0.0011 22.5 1.2 17 120-136 11-27 (90)
427 2xk0_A Polycomb protein PCL; t 22.2 44 0.0015 20.5 1.7 18 120-139 34-51 (69)
428 2okq_A Hypothetical protein YB 21.7 2.2E+02 0.0075 20.1 5.5 35 113-147 51-108 (141)
429 2e7g_A Putative ribosome-bindi 21.5 2E+02 0.0068 19.8 5.3 32 119-150 43-79 (129)
430 3i2z_B RNA chaperone, negative 21.5 44 0.0015 20.5 1.7 21 118-138 6-26 (71)
431 2lss_A Cold shock-like protein 26.5 20 0.0007 22.0 0.0 20 119-138 6-25 (70)
432 1qyr_A KSGA, high level kasuga 21.0 86 0.0029 24.3 3.7 29 97-125 92-120 (252)
433 2j5a_A 30S ribosomal protein S 20.6 1.1E+02 0.0038 20.5 3.7 49 96-146 11-82 (110)
434 2yty_A Cold shock domain-conta 20.4 42 0.0014 21.7 1.4 18 119-138 20-37 (88)
435 4bby_A Alkyldihydroxyacetoneph 20.2 1E+02 0.0035 27.8 4.4 49 102-150 350-409 (658)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.3e-29 Score=201.57 Aligned_cols=142 Identities=19% Similarity=0.322 Sum_probs=121.6
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
.++|||+|||++++|++|+++|++|| +||+|.. ...|.+|.+.+... .+.++.+++.
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~-~~~A~~Ai~~~~~~---~~~g~~i~~~ 90 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ-PADAERALDTMNFD---VIKGKPVRIM 90 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCC-HHHHHHHHHHhhhh---hcCCcccccc
Confidence 35799999999999999999999998 7888974 55666665554333 8899999999
Q ss_pred cCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcE
Q psy1188 80 WADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQT 153 (230)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~ 153 (230)
++....... .....+|||+|||+++|+++|+++|+.||.|..|+|+ +|||||+|.+.++|.+|++.|||..
T Consensus 91 ~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 91 WSQRDPSLR---KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp ECCCCTHHH---HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred ccccccccc---ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 986543321 1234689999999999999999999999999999987 5799999999999999999999999
Q ss_pred ecCcEeEEEEeCCC
Q psy1188 154 VAGSTLEVSLAKPP 167 (230)
Q Consensus 154 i~g~~l~V~~a~~~ 167 (230)
|+|++|+|.+++++
T Consensus 168 ~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 168 LNDRKVFVGRFKSR 181 (213)
T ss_dssp ETTEECEEEECCCH
T ss_pred ECCEEEEEEEcCCC
Confidence 99999999999964
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.5e-28 Score=182.78 Aligned_cols=140 Identities=19% Similarity=0.289 Sum_probs=121.9
Q ss_pred ceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+... .+.++.+.+.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~~~---~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQ-SHDANIALQTLNGK---QIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCC-HHHHHHHHHHcCCC---ccCCCeeEEEEc
Confidence 5799999999999999999999998 8889974 55666666554433 889999999999
Q ss_pred CCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcE
Q psy1188 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQT 153 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~ 153 (230)
.+..... ..+..+|||+|||.++|+++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||..
T Consensus 77 ~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 77 FQSQQSS---SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCCCCC---CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCCC---CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 7665432 2356789999999999999999999999999999987 4599999999999999999999999
Q ss_pred ecCcEeEEEEeCC
Q psy1188 154 VAGSTLEVSLAKP 166 (230)
Q Consensus 154 i~g~~l~V~~a~~ 166 (230)
++|++|+|.||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999973
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=8.7e-28 Score=187.88 Aligned_cols=148 Identities=20% Similarity=0.299 Sum_probs=118.3
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
...++|||+|||+++++++|+++|+.|| +||+|.. .+.|.+|... + ...+.|+.|.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~--~--~~~~~g~~l~ 85 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAMNA--R--PHKVDGRVVE 85 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHT--C--SCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCC-HHHHHHHHhc--C--CCEECCEEee
Confidence 4567899999999999999999999998 7899974 5556555554 2 3589999999
Q ss_pred eecCCCCCCCC-ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHH
Q psy1188 78 VDWADPQEEPD-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNE 148 (230)
Q Consensus 78 v~~a~~~~~~~-~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~ 148 (230)
|.++.+..... .....+.++|||+|||+++|+++|+++|+.||.|..|.++ +|||||+|.+.++|.+|++.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 99987654432 2223355789999999999999999999999999999987 45999999999999999976
Q ss_pred hCCcEecCcEeEEEEeCCCCch
Q psy1188 149 LNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 149 lng~~i~g~~l~V~~a~~~~~~ 170 (230)
++..|+|++|.|.++.++.+.
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp -SCCEETTEECEEEECC-----
T ss_pred -CCcEECCEEEEEEecCChhHh
Confidence 899999999999999987554
No 4
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=4.3e-27 Score=180.94 Aligned_cols=142 Identities=16% Similarity=0.227 Sum_probs=120.8
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.+ ++ +..+.|+.|.|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~--l~--g~~~~g~~l~v~ 86 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFES-AEDLEKALE--LT--GLKVFGNEIKLE 86 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESS-HHHHHHHHH--GG--GEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECC-HHHHHHHHh--cC--CCEeCCeEEEEe
Confidence 467899999999999999999999886 8999975 555555554 23 348899999999
Q ss_pred cCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEE---ecCEEEEEecCHHHHHHHHHHhCCcEecC
Q psy1188 80 WADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR---IKDYAFVHFEDRQEAITAMNELNGQTVAG 156 (230)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i---~rg~aFV~F~~~e~A~~Ai~~lng~~i~g 156 (230)
|+.+..... ..+..+|||+|||+++|+++|+++|++||.|..+.. .+|||||+|.+.++|.+|++.|||..|.|
T Consensus 87 ~~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 87 KPKGRDSKK---VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp CCCCSSCST---TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred cCCCccccc---cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 997754432 235679999999999999999999999999988711 16899999999999999999999999999
Q ss_pred cEeEEEEeCCC
Q psy1188 157 STLEVSLAKPP 167 (230)
Q Consensus 157 ~~l~V~~a~~~ 167 (230)
++|+|+||+++
T Consensus 164 ~~i~v~~a~~k 174 (175)
T 1fje_B 164 RSVSLYYTGEK 174 (175)
T ss_dssp EEEEEEECSSC
T ss_pred eEEEEEecCCC
Confidence 99999999976
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.94 E-value=7.7e-27 Score=178.05 Aligned_cols=137 Identities=22% Similarity=0.345 Sum_probs=119.6
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
.++|||+|||+++++++|+++|++|| +||+|.. .+.|..|.+.+.. ..+.++.|.|.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~a~~~l~~---~~~~g~~l~v~ 78 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTS-EMDSQRAIKVLNG---ITVRNKRLKVS 78 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESS-HHHHHHHHHHHTT---CEETTEECEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECC-HHHHHHHHHhcCC---CEeCCcEEEEE
Confidence 46899999999999999999999998 8899974 5566666655433 38899999999
Q ss_pred cCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCC
Q psy1188 80 WADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNG 151 (230)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng 151 (230)
|+.+.... .+..+|||+|||.++|+++|+++|++||.|..+.+++ |||||+|.+.++|.+|++.|||
T Consensus 79 ~~~~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 79 YARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp ECCCCSST-----TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ecCCCccc-----CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 99876542 2457899999999999999999999999999999873 6999999999999999999999
Q ss_pred cEecC--cEeEEEEe
Q psy1188 152 QTVAG--STLEVSLA 164 (230)
Q Consensus 152 ~~i~g--~~l~V~~a 164 (230)
..+.| ++|+|.||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99988 99999986
No 6
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=1e-26 Score=182.02 Aligned_cols=146 Identities=18% Similarity=0.279 Sum_probs=122.7
Q ss_pred cceeEeecCccccccccccccccCC----c--------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCc
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDY----T--------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGC 74 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~----g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~ 74 (230)
.++|||+|||+++++++|+++|++| | +||+|.+ .+.|.+|.. + ++ ..+.|+
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~-~~~A~~Al~-l-~g--~~~~g~ 78 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRS-VDETTQAMA-F-DG--IIFQGQ 78 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESC-SHHHHHHGG-G-TT--EEETTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCC-HHHHHHHHH-h-cC--CEEcCc
Confidence 5789999999999999999999988 2 8999975 455555553 2 33 489999
Q ss_pred eeeeecCCCCCCCC---------------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCE
Q psy1188 75 DIIVDWADPQEEPD---------------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDY 131 (230)
Q Consensus 75 ~i~v~~a~~~~~~~---------------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~ 131 (230)
.|.|.++.+..... .....+.++|||+|||+++|+++|+++|++||.|..|.+. +||
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 99999987653211 1112456899999999999999999999999999999987 459
Q ss_pred EEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 132 AFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 132 aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
|||+|.+.++|.+|++.|||..|+|++|+|.|++++..
T Consensus 159 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 159 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999998754
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=3.2e-27 Score=187.37 Aligned_cols=145 Identities=19% Similarity=0.336 Sum_probs=121.8
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
.++|||+|||+++++++|+++|+.|| +||+|.+ .+.|.+|...+.. ..+.++.|.|.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~~---~~~~g~~l~v~ 103 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEV-PEAAQLALEQMNS---VMLGGRNIKVG 103 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESS-HHHHHHHHHHHSS---CCCC-CCCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCC-HHHHHHHHHHccC---CeeCCeeEEEe
Confidence 46899999999999999999999998 8899974 5566666665433 37899999999
Q ss_pred cCCCCCCCCc------cCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHH
Q psy1188 80 WADPQEEPDT------ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITA 145 (230)
Q Consensus 80 ~a~~~~~~~~------~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~A 145 (230)
++........ .......+|||+|||.++|+++|+++|+.||.|..|+++ +|||||+|.+.++|.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 183 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA 183 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH
Confidence 8865542211 112355789999999999999999999999999999987 45999999999999999
Q ss_pred HHHhCCcEecCcEeEEEEeCCC
Q psy1188 146 MNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 146 i~~lng~~i~g~~l~V~~a~~~ 167 (230)
++.|||..|+|++|+|.|++++
T Consensus 184 ~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 184 VSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHccCCEeCCcEEEEEEecCC
Confidence 9999999999999999999965
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=1.1e-26 Score=177.98 Aligned_cols=139 Identities=18% Similarity=0.293 Sum_probs=119.1
Q ss_pred eccceeEeecCccccccccccccccCC----c--------------------ceEEecchHHHHHHhhhhhcCCCeeeee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDY----T--------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSR 72 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~----g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~ 72 (230)
.+.++|||+|||+++++++|+++|++| | +||+|.. .+.|.+|. .+ ++ ..+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~-~~~A~~A~-~~-~~--~~~~ 76 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRS-VDETTQAM-AF-DG--IIFQ 76 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESS-HHHHHHHG-GG-TT--CEET
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCC-HHHHHHHH-Hh-CC--cEec
Confidence 356889999999999999999999998 3 8899975 55555555 33 33 3889
Q ss_pred CceeeeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHH
Q psy1188 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAIT 144 (230)
Q Consensus 73 ~~~i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~ 144 (230)
|+.+.|.++.+.... ....+|||+|||.++|+++|+++|++||.|..+.+. +|||||+|.+.++|.+
T Consensus 77 g~~i~v~~~~~~~~~-----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPL-----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp TEECEEECCSSCCCC-----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred CceeeecCCcccCCC-----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 999999998655432 235689999999999999999999999999999987 3599999999999999
Q ss_pred HHHHhCCcEecCcEeEEEEeC
Q psy1188 145 AMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 145 Ai~~lng~~i~g~~l~V~~a~ 165 (230)
|++.|||..++|++|+|+||.
T Consensus 152 A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 152 AIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHTTCEETTEECEEEECC
T ss_pred HHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999973
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=1.9e-26 Score=175.44 Aligned_cols=136 Identities=24% Similarity=0.347 Sum_probs=118.0
Q ss_pred ceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
++|||+|||+++++++|+++|+.|| +||+|.. .+.|..|.+.+.. ..+.++.+.|.|
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~-~~~A~~a~~~l~~---~~~~g~~l~v~~ 78 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID-PKDAEKAINTLNG---LRLQTKTIKVSY 78 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHHHTT---CEETTEECEEEE
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECC-HHHHHHHHHHcCC---CccCCceEEEEe
Confidence 6789999999999999999999998 7899974 5566666665443 388999999999
Q ss_pred CCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCc
Q psy1188 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQ 152 (230)
Q Consensus 81 a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~ 152 (230)
+.+.... ....+|||+|||.++|+++|+++|++||.|..+++. +|||||+|.+.++|.+|++.|||.
T Consensus 79 ~~~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 79 ARPSSAS-----IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCCCCGG-----GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCCccc-----CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 9765432 245689999999999999999999999999999987 469999999999999999999999
Q ss_pred EecCc--EeEEEEe
Q psy1188 153 TVAGS--TLEVSLA 164 (230)
Q Consensus 153 ~i~g~--~l~V~~a 164 (230)
.+.|+ +|+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 99996 5898886
No 10
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=2.8e-26 Score=184.31 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=123.0
Q ss_pred ccceeEeecCcc-ccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 18 NVRKFTMAESSR-EAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 18 n~~~~~v~~l~~-~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
.-++|||+|||+ ++++++|+++|+.|| +||+|.. .+.|.+|.+.+.+. .+.|+.|.|.|+.
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~-~~~A~~Ai~~l~g~---~~~g~~l~v~~a~ 108 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD-GNQAQLAMSHLNGH---KLHGKPIRITLSK 108 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESC-HHHHHHHHHHHTTC---BCSSSBCEEECCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECC-HHHHHHHHHHhCCC---eECCeEEEEEEec
Confidence 346789999999 999999999999998 8999974 56666666654443 7899999999987
Q ss_pred CCCCCCc------------------------------cCCCCccEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEe---
Q psy1188 83 PQEEPDT------------------------------ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRI--- 128 (230)
Q Consensus 83 ~~~~~~~------------------------------~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G-~i~~~~i~--- 128 (230)
+...... ....+..+|||+|||.++|+++|+++|++|| .|..|+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 188 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 188 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC
Confidence 5421110 1123468999999999999999999999999 99999994
Q ss_pred cCEEEEEecCHHHHHHHHHHhCCcEec-CcEeEEEEeCCC
Q psy1188 129 KDYAFVHFEDRQEAITAMNELNGQTVA-GSTLEVSLAKPP 167 (230)
Q Consensus 129 rg~aFV~F~~~e~A~~Ai~~lng~~i~-g~~l~V~~a~~~ 167 (230)
+|||||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 689999999999999999999999999 999999999964
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=4.8e-26 Score=188.04 Aligned_cols=143 Identities=15% Similarity=0.236 Sum_probs=120.4
Q ss_pred cceeEeecCcccccccccc----ccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 19 VRKFTMAESSREAEEKPSS----ERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~----~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
.++|||+|||+++++++|+ ++|..|| +||+|.. .+.|.+|.+.+.. ..+.|+.|+|
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g---~~~~g~~l~v 84 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKE-VSSATNALRSMQG---FPFYDKPMRI 84 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECC-HHHHHHHHHHhcC---CeeCCcEEEE
Confidence 5678999999999999976 8999998 8899974 5566666655433 4889999999
Q ss_pred ecCCCCCCC-----------------------------------------------------------------------
Q psy1188 79 DWADPQEEP----------------------------------------------------------------------- 87 (230)
Q Consensus 79 ~~a~~~~~~----------------------------------------------------------------------- 87 (230)
.|+......
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998664420
Q ss_pred -----------------------------------CccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---c
Q psy1188 88 -----------------------------------DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---K 129 (230)
Q Consensus 88 -----------------------------------~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---r 129 (230)
......++++|||+|||.++|+++|+++|++||.|.+|+++ +
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 00112356789999999999999999999999999999998 3
Q ss_pred CEEEEEecCHHHHHHHHHHhCCcEec-CcEeEEEEeC
Q psy1188 130 DYAFVHFEDRQEAITAMNELNGQTVA-GSTLEVSLAK 165 (230)
Q Consensus 130 g~aFV~F~~~e~A~~Ai~~lng~~i~-g~~l~V~~a~ 165 (230)
|||||+|.+.++|.+|++.|||..|. |++|+|+||+
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 79999999999999999999999999 9999999997
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=3.3e-26 Score=189.24 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=124.9
Q ss_pred ceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
.+|||+|||+++++++|+++|+.|| +||+|.. ...|.+|...+.+. .+.|+.|.|.|
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~~~---~~~g~~i~v~~ 171 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMK-KDSAARAKSDLLGK---PLGPRTLYVHW 171 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEEE
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECC-HHHHHHHHHHhCCC---EeCCcEEEEEE
Confidence 5689999999999999999999998 7888874 55666666554443 88999999999
Q ss_pred CCCCCCCCccCCCCccEEEEecCCCCC-CHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCc
Q psy1188 81 ADPQEEPDTETMSKVKVLYVRNLTQYC-TEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQ 152 (230)
Q Consensus 81 a~~~~~~~~~~~~~~~~lfV~nL~~~~-te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~ 152 (230)
+.+...... ..+..+|||+|||+++ |+++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|||.
T Consensus 172 a~~~~~~~~--~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 172 TDAGQLTPA--LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp CCGGGCCTT--TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCcc--cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 987654322 2356789999999995 999999999999999999987 459999999999999999999999
Q ss_pred EecCcEeEEEEeCCCCch
Q psy1188 153 TVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 153 ~i~g~~l~V~~a~~~~~~ 170 (230)
.|+|++|+|.|++++..+
T Consensus 250 ~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 250 SLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp EETTEECEEEECCSSSCH
T ss_pred ccCCeEEEEEEecCCCcc
Confidence 999999999999988765
No 13
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=2e-26 Score=180.80 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=122.6
Q ss_pred cceeEeecCcc-ccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 19 VRKFTMAESSR-EAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 19 ~~~~~v~~l~~-~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
.++|||+|||+ ++++++|+++|+.|| +||+|.. .+.|..|...+... .+.|+.|.|.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~-~~~a~~A~~~l~~~---~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMAD-GNQAQLAMSHLNGH---KLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTT-THHHHHHHHHHTTC---CCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECC-HHHHHHHHHHhCCC---eecCeEEEEEEecC
Confidence 36789999999 999999999999998 8999974 55666666654443 78999999999875
Q ss_pred CCCCCc------------------------------cCCCCccEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEe---c
Q psy1188 84 QEEPDT------------------------------ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRI---K 129 (230)
Q Consensus 84 ~~~~~~------------------------------~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G-~i~~~~i~---r 129 (230)
...... ....++.+|||+|||.++|+++|+++|+.|| .|..+++. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~ 158 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR 158 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTS
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCC
Confidence 421110 1123478999999999999999999999999 99999995 6
Q ss_pred CEEEEEecCHHHHHHHHHHhCCcEec-CcEeEEEEeCCC
Q psy1188 130 DYAFVHFEDRQEAITAMNELNGQTVA-GSTLEVSLAKPP 167 (230)
Q Consensus 130 g~aFV~F~~~e~A~~Ai~~lng~~i~-g~~l~V~~a~~~ 167 (230)
|||||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 89999999999999999999999999 999999999964
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=3.4e-26 Score=180.91 Aligned_cols=141 Identities=13% Similarity=0.090 Sum_probs=116.8
Q ss_pred ceeEeecCc-cccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 20 RKFTMAESS-REAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 20 ~~~~v~~l~-~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
++|||+||| +.+++++|+++|.+|| +||+|.. ...|..|.+.+... .+.|+.|.|.|++..
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~-~~~A~~Ai~~lng~---~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMAD-GYAVDRAITHLNNN---FMFGQKMNVCVSKQP 80 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESS-HHHHHHHHHHHTTC---EETTEECEEEECSCS
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECC-HHHHHHHHHHhCCC---EECCceEEEEEccCC
Confidence 568999999 8999999999999999 8999974 66666666665443 899999999998643
Q ss_pred CCCC--------------------------------ccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCe--EEEEEec-
Q psy1188 85 EEPD--------------------------------TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRV--ERVKRIK- 129 (230)
Q Consensus 85 ~~~~--------------------------------~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i--~~~~i~r- 129 (230)
.... .....++++|||+|||+++|+++|+++|++||.| .++++.+
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 81 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred ccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 2100 0011346789999999999999999999999999 8898873
Q ss_pred -----CEEEEEecCHHHHHHHHHHhCCcEecCc----EeEEEEe
Q psy1188 130 -----DYAFVHFEDRQEAITAMNELNGQTVAGS----TLEVSLA 164 (230)
Q Consensus 130 -----g~aFV~F~~~e~A~~Ai~~lng~~i~g~----~l~V~~a 164 (230)
|||||+|.+.++|.+||..|||..|.|+ ++.|+||
T Consensus 161 ~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 161 KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 6999999999999999999999999886 7777775
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=4.3e-27 Score=179.41 Aligned_cols=138 Identities=15% Similarity=0.226 Sum_probs=117.9
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|... + ..++|+.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~---~--~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEK-PSSVDEVVKT---Q--HILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESS-THHHHHHHHS---C--CEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEcc-HHHHHHHHhc---c--cccCCeEccc
Confidence 357899999999999999999999998 8889975 4444444442 2 3889999999
Q ss_pred ecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhC
Q psy1188 79 DWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 79 ~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~ln 150 (230)
.++.+... ..+..+|||+|||+++|+++|+++|++||.|..+.+. +|||||+|.+.++|.+|++ +|
T Consensus 76 ~~~~~~~~-----~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~ 149 (167)
T 2cjk_A 76 KRAIPRDE-----QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK 149 (167)
T ss_dssp EECCCHHH-----HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS
T ss_pred ccccchhh-----ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC
Confidence 99865432 1245689999999999999999999999999999987 3599999999999999997 89
Q ss_pred CcEecCcEeEEEEeCCC
Q psy1188 151 GQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 151 g~~i~g~~l~V~~a~~~ 167 (230)
+..++|++|+|.||+|+
T Consensus 150 ~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECSSSSCEEEEECCCC
T ss_pred CEEeCCeEEEEeecCCC
Confidence 99999999999999986
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=4.1e-26 Score=175.00 Aligned_cols=143 Identities=21% Similarity=0.328 Sum_probs=116.5
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCcee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDI 76 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i 76 (230)
+.++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+.+..-..-.++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT-RKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESS-HHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECC-HHHHHHHHHHhcCcEEccCCccce
Confidence 457899999999999999999999997 6888864 566666666654442111226777
Q ss_pred eeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHh
Q psy1188 77 IVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNEL 149 (230)
Q Consensus 77 ~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~l 149 (230)
.+.++.+.... .....+|||+|||+++|+++|+++|++||.|..+.++ +|||||+|.+.++|.+|++.|
T Consensus 81 ~~~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 81 QMKPADSEKNN----AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp EEEECGGGCCS----CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred EEccccccccc----cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence 78877654432 2246789999999999999999999999999999987 459999999999999999999
Q ss_pred CCcEec---CcEeEEEEeC
Q psy1188 150 NGQTVA---GSTLEVSLAK 165 (230)
Q Consensus 150 ng~~i~---g~~l~V~~a~ 165 (230)
||..+. |++|+|.||.
T Consensus 157 ~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 157 HQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TTSCCCTTCSSCCEEEECC
T ss_pred cCCcccCCCCCCeEEEecC
Confidence 999776 4999999984
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=1.5e-25 Score=185.97 Aligned_cols=153 Identities=20% Similarity=0.279 Sum_probs=127.4
Q ss_pred cccEEEEeccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeee
Q psy1188 10 QKPIVIFVNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLL 70 (230)
Q Consensus 10 ~~~~~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~ 70 (230)
..-.+...+.++|||+|||+++++++|.++|..|| +||+|.. ...|.+|...+... .
T Consensus 108 ~~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~---~ 183 (292)
T 2ghp_A 108 NEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTS-KEDARYCVEKLNGL---K 183 (292)
T ss_dssp EECEEEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSS-HHHHHHHHHHHTTC---E
T ss_pred cEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECC-HHHHHHHHHHhCCC---E
Confidence 33445566788999999999999999999999998 8999974 55666666654433 8
Q ss_pred eeCceeeeecCCCCCCCCc--cCCCCccEEEEecCCCC-CCHHHHHHHhhcCCCeEEEEEe---------cCEEEEEecC
Q psy1188 71 SRGCDIIVDWADPQEEPDT--ETMSKVKVLYVRNLTQY-CTEEKLKEAFEQYGRVERVKRI---------KDYAFVHFED 138 (230)
Q Consensus 71 ~~~~~i~v~~a~~~~~~~~--~~~~~~~~lfV~nL~~~-~te~~L~~~F~~~G~i~~~~i~---------rg~aFV~F~~ 138 (230)
+.|+.|.|.|+.+...... ....+..+|||+|||++ +|+++|+++|+.||.|..|+++ +|||||+|.+
T Consensus 184 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp ETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred eCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 8999999999987655432 23446689999999999 9999999999999999999986 3599999999
Q ss_pred HHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 139 RQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 139 ~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
.++|.+|+ .|||..|+|++|+|.||+++
T Consensus 264 ~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 264 KDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999 99999999999999999975
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=3.1e-25 Score=181.62 Aligned_cols=138 Identities=16% Similarity=0.232 Sum_probs=118.6
Q ss_pred EeccceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 16 FVNVRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 16 ~~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
..+.++|||+|||+++|+++|+++|+.|| +||+|.+ ...|..|...+... .+.|+.|.|.|+.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~-~~~A~~A~~~l~g~---~i~g~~l~v~~a~ 94 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES-RTLAEIAKAELDGT---ILKSRPLRIRFAT 94 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSS-HHHHHHHHHHHTTC---EETTEECEEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECC-HHHHHHHHHHcCCc---EECCceeEeeecc
Confidence 34567899999999999999999999998 8999974 55666665544333 7899999999986
Q ss_pred CCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCC-cEe
Q psy1188 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNG-QTV 154 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng-~~i 154 (230)
+ ..+|||+|||+++|+++|+++|+.||.|..|.++ +|||||+|.+.++|.+|++.||+ ..+
T Consensus 95 ~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 95 H-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp C-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred c-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 4 3579999999999999999999999999999987 57999999999999999999954 455
Q ss_pred c---CcEeEEEEeCCCC
Q psy1188 155 A---GSTLEVSLAKPPS 168 (230)
Q Consensus 155 ~---g~~l~V~~a~~~~ 168 (230)
. +++|.|.++.+..
T Consensus 164 ~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SSSSCCBCEEEECCCEE
T ss_pred ecCCCceEEEeeccccC
Confidence 4 8999999998754
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=3.2e-24 Score=177.24 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=118.8
Q ss_pred ccceeEeecCccccccccccccccCCc------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~ 85 (230)
+.++|||+|||+++++++|+++|+.|| +||+|.+ .+.|.+|...+... .+.|+.+.|.|+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~~~---~~~g~~i~v~~~~--- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLN-GEQAEAAINAFHQS---RLRERELSVQLQP--- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEEECC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEEecCCCEEEEEeCC-HHHHHHHHHHcCCC---eeCCeEEEEEecC---
Confidence 457899999999999999999999998 8999974 55666666554443 7899999999864
Q ss_pred CCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCc
Q psy1188 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGS 157 (230)
Q Consensus 86 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~ 157 (230)
...+|||+|||+++|+++|+++|+.||.|..+.++ +|||||+|.+.++|.+|++.|||..++|+
T Consensus 94 --------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 94 --------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp --------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred --------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 23589999999999999999999999999999987 45999999999999999999999999999
Q ss_pred EeEEEEeCCC
Q psy1188 158 TLEVSLAKPP 167 (230)
Q Consensus 158 ~l~V~~a~~~ 167 (230)
+|+|.++.+.
T Consensus 166 ~i~v~~a~~~ 175 (284)
T 3smz_A 166 TLYVHWTDAG 175 (284)
T ss_dssp ECEEEECCGG
T ss_pred EEEEEECCCC
Confidence 9999999864
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.91 E-value=3.8e-24 Score=177.51 Aligned_cols=136 Identities=13% Similarity=0.197 Sum_probs=117.1
Q ss_pred eccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
...++|||+|||+++++++|+++|+.|| +||+|.. .+.|.+|... ++ ..+.|+.|.|.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~~~--~~--~~~~g~~i~v~ 113 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAITK--TH--KVVGQNEIIVS 113 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHHTT--TT--CEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECC-HHHHHHHHHh--CC--cEeCCcEEEEE
Confidence 4567899999999999999999999998 7899974 5555555543 33 48999999999
Q ss_pred cCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCC
Q psy1188 80 WADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRI-------KDYAFVHFEDRQEAITAMNELNG 151 (230)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G-~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng 151 (230)
++ ...+|||+|||+++|+++|+++|+.|| .|..|.++ +|||||+|.+.++|.+|++.|||
T Consensus 114 ~~------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 114 HL------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp EC------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred EC------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 86 356899999999999999999999999 99999985 57999999999999999999999
Q ss_pred cEecCcEeEEEEeCCCCc
Q psy1188 152 QTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 152 ~~i~g~~l~V~~a~~~~~ 169 (230)
..|.|++|.|.++.+...
T Consensus 182 ~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp CEETTEECEEEECCCC--
T ss_pred CEeCCcEEEEEECCCCcc
Confidence 999999999999997654
No 21
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=141.66 Aligned_cols=73 Identities=36% Similarity=0.539 Sum_probs=69.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
..++|||+|||+++|+++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.|||..|+|++|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45689999999999999999999999999999987 3599999999999999999999999999999999998
Q ss_pred C
Q psy1188 166 P 166 (230)
Q Consensus 166 ~ 166 (230)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 22
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.87 E-value=3.1e-21 Score=135.86 Aligned_cols=78 Identities=54% Similarity=0.980 Sum_probs=73.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCch
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.++++||||+|.+.++|++|++.||+..|.|++|+|.|++++..+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999976544
No 23
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.2e-21 Score=134.82 Aligned_cols=82 Identities=54% Similarity=0.885 Sum_probs=75.7
Q ss_pred CCccCCCCccEEEEecCCCCCCHHHHHHHhhcC--CCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 87 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.......+.++|||+|||+++|+++|+++|++| |.|..|.+.+|||||+|.+.++|++|++.|||..|.|++|+|.|+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 7 GDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 334445567899999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy1188 165 KPPS 168 (230)
Q Consensus 165 ~~~~ 168 (230)
+++.
T Consensus 87 ~~~~ 90 (99)
T 2cpd_A 87 KPVD 90 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9764
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=9e-22 Score=147.94 Aligned_cols=120 Identities=27% Similarity=0.336 Sum_probs=97.6
Q ss_pred ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC-----------CCCccCCCCccEEEEecCCCCCCHHHHH
Q psy1188 45 KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE-----------EPDTETMSKVKVLYVRNLTQYCTEEKLK 113 (230)
Q Consensus 45 ~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~-----------~~~~~~~~~~~~lfV~nL~~~~te~~L~ 113 (230)
.+++|. +...|+++.+.+.++. .++| .+.+.++.... ........+.++|||+|||+++|+++|+
T Consensus 16 ~~ve~~-~~~~A~~a~~~~~ng~--~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 91 (150)
T 2i2y_A 16 TTTEAV-DAATAEKVFKQYANDN--GVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELE 91 (150)
T ss_dssp EEEECS-SHHHHTTTHHHHHHHH--TCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHH
T ss_pred ceeeec-CHHHHHHHHHHHhcCC--CCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 477886 4666666666653332 6778 88888876521 1122334567899999999999999999
Q ss_pred HHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 114 EAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 114 ~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
++|++||.|.+|+++ +|||||+|.+.++|.+|++.|||..|.|++|+|+|++++.
T Consensus 92 ~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 92 RAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999998 6799999999999999999999999999999999999763
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=135.76 Aligned_cols=76 Identities=28% Similarity=0.355 Sum_probs=70.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcE--ecCcEeEEEEeCCC
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQT--VAGSTLEVSLAKPP 167 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~--i~g~~l~V~~a~~~ 167 (230)
..++++|||+|||+++|+++|+++|++||.|.++.++ ||||||+|.+.++|.+|++.||+.. |.|++|+|.||+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 3467899999999999999999999999999999998 7899999999999999999999874 78999999999965
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.6e-21 Score=140.17 Aligned_cols=76 Identities=25% Similarity=0.493 Sum_probs=71.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
..+|||+|||+++|+++|+++|++||.|.+|+|+ ||||||+|.+.++|++||+.|||..|+|++|+|.+++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 4579999999999999999999999999999988 5799999999999999999999999999999999999876
Q ss_pred ch
Q psy1188 169 DK 170 (230)
Q Consensus 169 ~~ 170 (230)
.+
T Consensus 85 ~~ 86 (115)
T 4f25_A 85 ER 86 (115)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 27
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=133.03 Aligned_cols=76 Identities=33% Similarity=0.592 Sum_probs=72.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.+.++||||+|.+.++|++|++.||+..|.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999764
No 28
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=132.67 Aligned_cols=77 Identities=35% Similarity=0.578 Sum_probs=73.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
.+.++|||+|||.++|+++|+++|++||.|..|.+.++||||+|.+.++|++|++.||+..|+|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999997643
No 29
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-21 Score=137.73 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=71.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCC--cEecCcEeEEEEeCCCCc
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNG--QTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng--~~i~g~~l~V~~a~~~~~ 169 (230)
+..+|||+|||+++|+++|+++|++||+|.+|+++ ||||||+|.+.++|++|++.|++ ..|.|++|+|.||+++..
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 94 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence 56789999999999999999999999999999999 68999999999999999998874 799999999999997654
Q ss_pred h
Q psy1188 170 K 170 (230)
Q Consensus 170 ~ 170 (230)
+
T Consensus 95 ~ 95 (105)
T 1sjq_A 95 K 95 (105)
T ss_dssp C
T ss_pred C
Confidence 4
No 30
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=133.02 Aligned_cols=76 Identities=36% Similarity=0.633 Sum_probs=72.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
+.++|||+|||+++|+++|+++|++||.|..|.+.++||||+|.+.++|++|++.|||..|.|++|+|.+++++..
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999997643
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=3.4e-21 Score=137.35 Aligned_cols=74 Identities=24% Similarity=0.313 Sum_probs=69.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||+++|+++|+++|++||.|.+|+|+ +|||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 56789999999999999999999999999999987 4699999999999999999999999999999999997
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 32
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.85 E-value=4.2e-21 Score=136.79 Aligned_cols=95 Identities=26% Similarity=0.469 Sum_probs=81.4
Q ss_pred eCceeeeecCCCCCCCCccCCCCccEEEEecCCCC-CCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhC
Q psy1188 72 RGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY-CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 72 ~~~~i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~-~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~ln 150 (230)
.|..+.+..+.+...... ....++|||+|||++ +|+++|+++|++||.|..|.+.++||||+|.+.++|++|++.||
T Consensus 6 ~g~~~~~~~s~~~~~~~~--~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~ 83 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDP--KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGEN 83 (110)
T ss_dssp CSCCCCCCCCCSCCSCCC--TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHT
T ss_pred CCcccccccCCCCCCCCC--CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcC
Confidence 456666666654433322 234579999999999 99999999999999999999999999999999999999999999
Q ss_pred CcEecCcEeEEEEeCCCC
Q psy1188 151 GQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 151 g~~i~g~~l~V~~a~~~~ 168 (230)
+..|+|++|+|.+++++.
T Consensus 84 g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 84 GRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCEETTEECCEEESCCCC
T ss_pred CCEECCeEEEEEECCCCC
Confidence 999999999999998543
No 33
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.85 E-value=6.6e-21 Score=132.81 Aligned_cols=76 Identities=18% Similarity=0.373 Sum_probs=72.4
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 93 SKVKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 93 ~~~~~lfV~nL~~-~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
.+.++|||+|||+ ++++++|+++|++||.|..|++.+|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 4678999999998 999999999999999999999999999999999999999999999999999999999998753
No 34
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.4e-21 Score=135.10 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=69.7
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEec--CEEEEEecCHHHHHHHHHHhCCc--EecCcEeEEEEeCCC
Q psy1188 93 SKVKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRIK--DYAFVHFEDRQEAITAMNELNGQ--TVAGSTLEVSLAKPP 167 (230)
Q Consensus 93 ~~~~~lfV~nL~~-~~te~~L~~~F~~~G~i~~~~i~r--g~aFV~F~~~e~A~~Ai~~lng~--~i~g~~l~V~~a~~~ 167 (230)
.++++|||+|||+ ++|+++|+++|++||.|.+|.+++ +||||+|.+.++|.+|++.||+. .|.|++|+|.||+..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 3678999999999 999999999999999999999985 79999999999999999999864 699999999999964
No 35
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=2.3e-20 Score=141.27 Aligned_cols=123 Identities=24% Similarity=0.341 Sum_probs=92.1
Q ss_pred ceEEecchHHHHHHhhhhhc-----CCCeeeeeCceeeeecCCCCC-CCCccCCCCccEEEEecCCCCCCHHHHHHHhhc
Q psy1188 45 KLLEYGLDKRIAGKLDDIFK-----TGKHLLSRGCDIIVDWADPQE-EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQ 118 (230)
Q Consensus 45 ~fv~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~i~v~~a~~~~-~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~ 118 (230)
+||+|.. ...|+++...+. ++ ...+.+............ ...........+|||+|||+++|+++|+++|+.
T Consensus 16 ~fV~f~~-~~~A~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~ 93 (158)
T 2kn4_A 16 TTTEAVD-AATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEK 93 (158)
T ss_dssp EEEECSS-HHHHHHHHHHHHHHHTCCC-EEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHH
T ss_pred hHHHHHH-HHhHHHHHHhhcccCCCCC-cccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 6999975 445554443322 22 344455444433332221 122223345689999999999999999999999
Q ss_pred CCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 119 YGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 119 ~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
||.|..|.++ +|||||+|.+.++|++|++.|||..|.|++|+|.+++++..
T Consensus 94 ~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 94 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999987 46999999999999999999999999999999999997643
No 36
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.85 E-value=5e-21 Score=136.07 Aligned_cols=79 Identities=32% Similarity=0.550 Sum_probs=73.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCch
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
..+.++|||+|||.++|+++|+++|++||.|..|.+.+|||||+|.+.++|++|++.|||..|+|++|+|.|++++..+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 3466899999999999999999999999999999999999999999999999999999999999999999999987544
No 37
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=131.56 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=71.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhC--CcEecCcEeEEEEeCCCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELN--GQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~ln--g~~i~g~~l~V~~a~~~~ 168 (230)
.++++|||+|||+++|+++|+++|++||.|..|.++ ||||||+|.+.++|++|++.|+ +..|.|++|+|.|++++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 467899999999999999999999999999999988 5799999999999999999874 678999999999999765
Q ss_pred ch
Q psy1188 169 DK 170 (230)
Q Consensus 169 ~~ 170 (230)
.+
T Consensus 93 ~~ 94 (101)
T 2cq1_A 93 LK 94 (101)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 38
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.3e-21 Score=132.02 Aligned_cols=76 Identities=30% Similarity=0.360 Sum_probs=72.1
Q ss_pred CccEEEEecCCCCCCHHHHH----HHhhcCCCeEEEEEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLK----EAFEQYGRVERVKRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~----~~F~~~G~i~~~~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
+.++|||+|||+++++++|+ ++|++||.|.+|+++ ++||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 56789999999999999999 999999999999999 789999999999999999999999999999999999
Q ss_pred CCCCc
Q psy1188 165 KPPSD 169 (230)
Q Consensus 165 ~~~~~ 169 (230)
+++..
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 97644
No 39
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=4.6e-21 Score=129.17 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=68.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+..|||+||++.+|+++|+++|.+||+|.++++. ||||||+|.+.++|.+|++.||+..+.|++|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4579999999999999999999999999999987 8999999999999999999999999999999999994
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.3e-20 Score=127.24 Aligned_cols=73 Identities=26% Similarity=0.476 Sum_probs=69.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
.+|||+|||+++|+++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..++|++|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 579999999999999999999999999999988 569999999999999999999999999999999999976
Q ss_pred C
Q psy1188 168 S 168 (230)
Q Consensus 168 ~ 168 (230)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 41
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=127.97 Aligned_cols=76 Identities=26% Similarity=0.513 Sum_probs=71.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEE---------ecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR---------IKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i---------~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
..++|||+|||.++|+++|+++|++||.|..+.+ .+|||||+|.+.++|++|++.|||..++|++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3568999999999999999999999999999997 4789999999999999999999999999999999999
Q ss_pred CCCCc
Q psy1188 165 KPPSD 169 (230)
Q Consensus 165 ~~~~~ 169 (230)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97643
No 42
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-20 Score=130.30 Aligned_cols=77 Identities=32% Similarity=0.479 Sum_probs=72.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
.+.++|||+|||+++|+++|+++|++||.|..|+++ ++||||+|.+.++|++|++.||+..|+|++|+|.++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 456899999999999999999999999999999998 67999999999999999999999999999999999997
Q ss_pred CCc
Q psy1188 167 PSD 169 (230)
Q Consensus 167 ~~~ 169 (230)
+..
T Consensus 93 ~~~ 95 (103)
T 2cq3_A 93 RVM 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 43
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.3e-21 Score=132.98 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=72.7
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCch
Q psy1188 93 SKVKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 93 ~~~~~lfV~nL~~-~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
.+.++|||+|||+ ++|+++|+++|++||.|..|.+.+|||||+|.+.++|++|++.|||..+.|++|+|.+++++...
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence 3577999999998 99999999999999999999999999999999999999999999999999999999999976443
No 44
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=133.10 Aligned_cols=77 Identities=26% Similarity=0.311 Sum_probs=70.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCc--EecCcEeEEEEeCCC
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQ--TVAGSTLEVSLAKPP 167 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~--~i~g~~l~V~~a~~~ 167 (230)
..++++|||+|||+++++++|+++|++||.|..|.++ |+||||+|.+.++|.+|++.|++. .|.|++|+|.|++++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 3467899999999999999999999999999999988 689999999999999999998765 599999999999965
Q ss_pred C
Q psy1188 168 S 168 (230)
Q Consensus 168 ~ 168 (230)
.
T Consensus 92 ~ 92 (104)
T 1wex_A 92 R 92 (104)
T ss_dssp S
T ss_pred c
Confidence 4
No 45
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-21 Score=134.40 Aligned_cols=75 Identities=21% Similarity=0.434 Sum_probs=68.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEe--------cCEEEEEecCHHHHHHHHHHhC-CcEecCcEeEEEEeC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRI--------KDYAFVHFEDRQEAITAMNELN-GQTVAGSTLEVSLAK 165 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G-~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~ln-g~~i~g~~l~V~~a~ 165 (230)
++|||+|||+++|+++|+++|++|| .|.+|+++ ||||||+|.+.++|++|++.|+ +..++|++|+|+||+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 89999886 5799999999999999999885 458999999999999
Q ss_pred CCCch
Q psy1188 166 PPSDK 170 (230)
Q Consensus 166 ~~~~~ 170 (230)
++...
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 46
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=136.03 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=71.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCC--cEecCcEeEEEEeCCCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNG--QTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng--~~i~g~~l~V~~a~~~~ 168 (230)
.++++|||+|||+++|+++|+++|++||.|.+|.++ ||||||+|.+.++|++|++.|++ ..|.|++|+|.||+++.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 457899999999999999999999999999999998 68999999999999999999985 58999999999999765
Q ss_pred ch
Q psy1188 169 DK 170 (230)
Q Consensus 169 ~~ 170 (230)
.+
T Consensus 109 ~~ 110 (119)
T 2ad9_A 109 LK 110 (119)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 47
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=132.12 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=71.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec-CEEEEEecCHHHHHHHHHHhCCcEecC-----cEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK-DYAFVHFEDRQEAITAMNELNGQTVAG-----STLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r-g~aFV~F~~~e~A~~Ai~~lng~~i~g-----~~l~V~~a~~~ 167 (230)
..++|||+|||+++|+++|+++|++||.|..|.+++ +||||+|.+.++|++||+.||+..|.| ++|+|.+++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence 467899999999999999999999999999999998 899999999999999999999999999 99999999975
Q ss_pred C
Q psy1188 168 S 168 (230)
Q Consensus 168 ~ 168 (230)
.
T Consensus 94 ~ 94 (108)
T 1x4c_A 94 S 94 (108)
T ss_dssp S
T ss_pred C
Confidence 4
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.4e-20 Score=129.73 Aligned_cols=77 Identities=22% Similarity=0.464 Sum_probs=72.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec-------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK-------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r-------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.+++ +||||+|.+.++|++|++.|||..|.|++|+|.+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3567899999999999999999999999999999883 799999999999999999999999999999999999
Q ss_pred CCCc
Q psy1188 166 PPSD 169 (230)
Q Consensus 166 ~~~~ 169 (230)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8754
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=127.49 Aligned_cols=74 Identities=24% Similarity=0.461 Sum_probs=68.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||.++|+++|+++|++||.|.+|.++ +|||||+|.+.++|++|++.|||..++|++|+|.|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56789999999999999999999999999999987 3599999999999999999999999999999999999
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.4e-20 Score=129.88 Aligned_cols=78 Identities=32% Similarity=0.562 Sum_probs=72.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.+++ +||||+|.+.++|++|++.||+..|.|++|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 3567999999999999999999999999999999984 7999999999999999999999999999999999997
Q ss_pred CCch
Q psy1188 167 PSDK 170 (230)
Q Consensus 167 ~~~~ 170 (230)
+..+
T Consensus 93 ~~~~ 96 (103)
T 2cqi_A 93 PSSQ 96 (103)
T ss_dssp TTCC
T ss_pred Cccc
Confidence 6543
No 51
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=1.2e-21 Score=157.15 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=68.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCC--CeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G--~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..++|||+|||+++|+++|+++|++|| .|.+|+|+ ||||||+|.+.++|++||+.||+..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 99999987 45999999999999999999999999999999999
Q ss_pred eCCC
Q psy1188 164 AKPP 167 (230)
Q Consensus 164 a~~~ 167 (230)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9854
No 52
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3e-20 Score=129.35 Aligned_cols=75 Identities=20% Similarity=0.438 Sum_probs=70.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEec--CcEeEEEEeCCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVA--GSTLEVSLAKPPS 168 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~--g~~l~V~~a~~~~ 168 (230)
+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.||+..|. |++|+|.|++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 45789999999999999999999999999999998 569999999999999999999999999 9999999999764
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=131.20 Aligned_cols=78 Identities=36% Similarity=0.607 Sum_probs=72.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|||..|.|++|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 356789999999999999999999999999999998 56999999999999999999999999999999999997
Q ss_pred CCch
Q psy1188 167 PSDK 170 (230)
Q Consensus 167 ~~~~ 170 (230)
+..+
T Consensus 93 ~~~~ 96 (103)
T 2d9p_A 93 KEER 96 (103)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6543
No 54
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=3.3e-20 Score=140.24 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=71.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||.++|+++|+++|++||.|..|.++ ++||||+|.+.++|++||+.||+..|.|++|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999996 469999999999999999999999999999999999
Q ss_pred CCCCc
Q psy1188 165 KPPSD 169 (230)
Q Consensus 165 ~~~~~ 169 (230)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 97543
No 55
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=130.17 Aligned_cols=77 Identities=31% Similarity=0.471 Sum_probs=72.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
..+.++|||+|||+++|+++|+++|++||.|..|.+.+ +||||+|.+.++|++|++.|||..|.|++|+|.|++++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 34667999999999999999999999999999999984 899999999999999999999999999999999999754
No 56
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=3.6e-20 Score=125.63 Aligned_cols=72 Identities=32% Similarity=0.569 Sum_probs=68.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..++|++|+|+||+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 56789999999999999999999999999999984 6799999999999999999999999999999999986
No 57
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=4.7e-20 Score=128.08 Aligned_cols=78 Identities=24% Similarity=0.405 Sum_probs=72.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
++++|||+|||.++++++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.|||..++|++|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35689999999999999999999999999999987 5799999999999999999999999999999999999
Q ss_pred CCCchh
Q psy1188 166 PPSDKK 171 (230)
Q Consensus 166 ~~~~~~ 171 (230)
++....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 876553
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=129.18 Aligned_cols=76 Identities=32% Similarity=0.483 Sum_probs=71.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++.|||..|.|++|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 56799999999999999999999999999999986 4799999999999999999999999999999999999
Q ss_pred CCCc
Q psy1188 166 PPSD 169 (230)
Q Consensus 166 ~~~~ 169 (230)
++..
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 7644
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.4e-20 Score=130.75 Aligned_cols=76 Identities=25% Similarity=0.430 Sum_probs=71.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.||+..|.|++|+|+|++++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 356799999999999999999999999999999987 569999999999999999999999999999999999975
Q ss_pred C
Q psy1188 168 S 168 (230)
Q Consensus 168 ~ 168 (230)
.
T Consensus 100 ~ 100 (109)
T 1x4a_A 100 R 100 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 60
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.5e-20 Score=132.67 Aligned_cols=76 Identities=33% Similarity=0.503 Sum_probs=71.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
..+.++|||+|||.++|+++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..|+|++|+|++++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3466899999999999999999999999999999998 6799999999999999999999999999999999999
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
++
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 61
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=128.01 Aligned_cols=75 Identities=31% Similarity=0.521 Sum_probs=70.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
++++|||+|||.++|+++|+++|++||.|..|.+.+ +||||+|.+.++|++|++.|||..|.|++|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 567899999999999999999999999999999873 599999999999999999999999999999999999
Q ss_pred CCC
Q psy1188 166 PPS 168 (230)
Q Consensus 166 ~~~ 168 (230)
++.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 753
No 62
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=5e-20 Score=130.00 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=72.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecC---cEeEEE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAG---STLEVS 162 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g---~~l~V~ 162 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|||..+.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 356899999999999999999999999999999998 4699999999999999999999999988 999999
Q ss_pred EeCCCCch
Q psy1188 163 LAKPPSDK 170 (230)
Q Consensus 163 ~a~~~~~~ 170 (230)
|++++..+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99987654
No 63
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=8.2e-20 Score=131.03 Aligned_cols=79 Identities=27% Similarity=0.473 Sum_probs=72.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..+.++|||+|||.++|+++|+++|+.||.|..|++++ |||||+|.+.++|++|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999883 5999999999999999999999999999999999
Q ss_pred eCCCCch
Q psy1188 164 AKPPSDK 170 (230)
Q Consensus 164 a~~~~~~ 170 (230)
++++...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9976443
No 64
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.1e-20 Score=124.52 Aligned_cols=72 Identities=31% Similarity=0.514 Sum_probs=68.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHh-CCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNEL-NGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~l-ng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|.+|++.| |+..+.|++|+|+||+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 56789999999999999999999999999999998 489999999999999999999 9999999999999985
No 65
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=134.60 Aligned_cols=76 Identities=32% Similarity=0.535 Sum_probs=71.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
...++|||+|||.++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.|||..|.|++|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999987 569999999999999999999999999999999999
Q ss_pred CCCC
Q psy1188 165 KPPS 168 (230)
Q Consensus 165 ~~~~ 168 (230)
+++.
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9764
No 66
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.2e-20 Score=126.44 Aligned_cols=75 Identities=32% Similarity=0.478 Sum_probs=70.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..+.++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|||..|.|++|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456889999999999999999999999999999987 45999999999999999999999999999999999
Q ss_pred eCC
Q psy1188 164 AKP 166 (230)
Q Consensus 164 a~~ 166 (230)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 984
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=4.5e-20 Score=131.35 Aligned_cols=78 Identities=26% Similarity=0.496 Sum_probs=72.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..+.++|||+|||.++|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|||..|+|++|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999987 47999999999999999999999999999999999
Q ss_pred eCCCCc
Q psy1188 164 AKPPSD 169 (230)
Q Consensus 164 a~~~~~ 169 (230)
++++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 997654
No 68
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=130.15 Aligned_cols=73 Identities=22% Similarity=0.448 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCC--eEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCc----EecCcEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRI--------KDYAFVHFEDRQEAITAMNELNGQ----TVAGSTL 159 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~--i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~----~i~g~~l 159 (230)
...+|||+|||+++|+++|+++|++||. |.+|+++ ||||||+|.+.++|++|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4568999999999999999999999995 5678876 569999999999999999999997 5999999
Q ss_pred EEEEeCC
Q psy1188 160 EVSLAKP 166 (230)
Q Consensus 160 ~V~~a~~ 166 (230)
+|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999984
No 69
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9e-20 Score=126.04 Aligned_cols=73 Identities=29% Similarity=0.476 Sum_probs=68.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++|++.||+..|.|++|+|+||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 356789999999999999999999999999999987 469999999999999999999999999999999998
Q ss_pred C
Q psy1188 165 K 165 (230)
Q Consensus 165 ~ 165 (230)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 6
No 70
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=128.03 Aligned_cols=76 Identities=32% Similarity=0.598 Sum_probs=70.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||.++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++ ||+..|.|++|+|.+++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 56789999999999999999999999999999986 5799999999999999998 99999999999999999
Q ss_pred CCCch
Q psy1188 166 PPSDK 170 (230)
Q Consensus 166 ~~~~~ 170 (230)
++..+
T Consensus 88 ~~~~~ 92 (99)
T 2dgs_A 88 PRDSK 92 (99)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
No 71
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=5.9e-20 Score=130.47 Aligned_cols=77 Identities=32% Similarity=0.548 Sum_probs=72.0
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..+.++|||+|||.++|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|||..|.|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999987 46999999999999999999999999999999999
Q ss_pred eCCCC
Q psy1188 164 AKPPS 168 (230)
Q Consensus 164 a~~~~ 168 (230)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 99764
No 72
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=3.5e-20 Score=141.47 Aligned_cols=80 Identities=26% Similarity=0.508 Sum_probs=71.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..+.++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|++||+.|||..|.|++|+|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999987 46999999999999999999999999999999999
Q ss_pred eCCCCchh
Q psy1188 164 AKPPSDKK 171 (230)
Q Consensus 164 a~~~~~~~ 171 (230)
+.++..+.
T Consensus 149 a~~~~~~~ 156 (165)
T 1rk8_A 149 CFVKGPKR 156 (165)
T ss_dssp SEECC---
T ss_pred ecCCCCCC
Confidence 99876553
No 73
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.5e-20 Score=129.75 Aligned_cols=77 Identities=25% Similarity=0.320 Sum_probs=71.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 356799999999999999999999999999999987 369999999999999999999999999999999999
Q ss_pred CCCCc
Q psy1188 165 KPPSD 169 (230)
Q Consensus 165 ~~~~~ 169 (230)
+++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 97644
No 74
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.6e-20 Score=129.28 Aligned_cols=77 Identities=26% Similarity=0.429 Sum_probs=71.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEE-EEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-KRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~-~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
+.++|||+|||+++|+++|+++|++||.|..+ +++ ++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56789999999999999999999999999999 887 469999999999999999999999999999999999
Q ss_pred CCCCch
Q psy1188 165 KPPSDK 170 (230)
Q Consensus 165 ~~~~~~ 170 (230)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 976543
No 75
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-20 Score=133.41 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=70.7
Q ss_pred CCCccEEEEecCCCC-CCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCC--cEecCcEeEEEEeCC
Q psy1188 92 MSKVKVLYVRNLTQY-CTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNG--QTVAGSTLEVSLAKP 166 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~-~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng--~~i~g~~l~V~~a~~ 166 (230)
..++++|||+|||++ +|+++|+++|++||.|.+|.++ ||||||+|.+.++|++|++.||+ ..|.|++|+|.||+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 346789999999998 9999999999999999999998 58999999999999999998865 569999999999996
Q ss_pred CCc
Q psy1188 167 PSD 169 (230)
Q Consensus 167 ~~~ 169 (230)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
No 76
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.8e-20 Score=130.83 Aligned_cols=77 Identities=29% Similarity=0.499 Sum_probs=71.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..+.++|||+|||.++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++.|||..|.|++|+|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3466899999999999999999999999999999987 46999999999999999999999999999999999
Q ss_pred eCCCC
Q psy1188 164 AKPPS 168 (230)
Q Consensus 164 a~~~~ 168 (230)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 77
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.8e-20 Score=130.43 Aligned_cols=74 Identities=22% Similarity=0.448 Sum_probs=70.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
..++|||+|||.++|+++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..++|++|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45789999999999999999999999999999997 789999999999999999999999999999999999864
No 78
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=2.4e-20 Score=132.85 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=69.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCC-CeEEEEEe----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYG-RVERVKRI----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G-~i~~~~i~----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
...+|||+|||+++|+++|+++|++|| .|..+.+. +|||||+|.+.++|++||+.|||..|.|++|+|++++.+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 356899999999999999999999999 99999986 789999999999999999999999999999999999854
No 79
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=5e-20 Score=132.18 Aligned_cols=77 Identities=25% Similarity=0.431 Sum_probs=71.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|++||.|..|+++ ++||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 356789999999999999999999999999999987 359999999999999999999999999999999999
Q ss_pred CCCCc
Q psy1188 165 KPPSD 169 (230)
Q Consensus 165 ~~~~~ 169 (230)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 97644
No 80
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=128.30 Aligned_cols=75 Identities=29% Similarity=0.520 Sum_probs=70.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-----------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-----------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~ 162 (230)
+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45789999999999999999999999999999887 3599999999999999999999999999999999
Q ss_pred EeCCCC
Q psy1188 163 LAKPPS 168 (230)
Q Consensus 163 ~a~~~~ 168 (230)
+++++.
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 999754
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.8e-20 Score=129.71 Aligned_cols=78 Identities=28% Similarity=0.491 Sum_probs=72.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhC------CcEecCcE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELN------GQTVAGST 158 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~ln------g~~i~g~~ 158 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++.|| +..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456789999999999999999999999999999987 5799999999999999999999 99999999
Q ss_pred eEEEEeCCCCch
Q psy1188 159 LEVSLAKPPSDK 170 (230)
Q Consensus 159 l~V~~a~~~~~~ 170 (230)
|+|.|++++...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999987543
No 82
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.3e-20 Score=129.65 Aligned_cols=78 Identities=32% Similarity=0.551 Sum_probs=72.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 356789999999999999999999999999999985 569999999999999999999999999999999999
Q ss_pred CCCCch
Q psy1188 165 KPPSDK 170 (230)
Q Consensus 165 ~~~~~~ 170 (230)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 976543
No 83
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.5e-20 Score=128.02 Aligned_cols=76 Identities=30% Similarity=0.452 Sum_probs=69.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
...++|||+|||+++|+++|+++|++||.|. +.++ +|||||+|.+.++|++|++.|||..|.|++|+|.+++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3467999999999999999999999999996 6665 7899999999999999999999999999999999999864
Q ss_pred c
Q psy1188 169 D 169 (230)
Q Consensus 169 ~ 169 (230)
.
T Consensus 96 ~ 96 (97)
T 2e5j_A 96 D 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 84
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=8.9e-20 Score=126.80 Aligned_cols=77 Identities=23% Similarity=0.436 Sum_probs=72.9
Q ss_pred CccEEEEecCCCCCCHHHHH----HHhhcCCCeEEEEEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLK----EAFEQYGRVERVKRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~----~~F~~~G~i~~~~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
++++|||+|||.++++++|+ ++|++||.|..|.+. +|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56799999999999999999 999999999999987 689999999999999999999999999999999999
Q ss_pred CCCCch
Q psy1188 165 KPPSDK 170 (230)
Q Consensus 165 ~~~~~~ 170 (230)
+++...
T Consensus 87 ~~~~~~ 92 (97)
T 1nu4_A 87 KTDSDI 92 (97)
T ss_dssp SSCCTH
T ss_pred cCCCcc
Confidence 987655
No 85
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=130.24 Aligned_cols=77 Identities=23% Similarity=0.500 Sum_probs=72.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
...++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||..|.|++|+|.|++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 356789999999999999999999999999999998 68999999999999999999999999999999999997654
No 86
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=135.34 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=72.1
Q ss_pred CCccEEEEecCCCCCCHHHHH----HHhhcCCCeEEEEEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLK----EAFEQYGRVERVKRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~----~~F~~~G~i~~~~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
.+.++|||+|||+++++++|+ ++|++||.|.+|.+. ||||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 356789999999999999876 699999999999886 58999999999999999999999999999999999
Q ss_pred eCCCCchh
Q psy1188 164 AKPPSDKK 171 (230)
Q Consensus 164 a~~~~~~~ 171 (230)
|+++....
T Consensus 107 a~~~~~~~ 114 (127)
T 2a3j_A 107 SETPQSQV 114 (127)
T ss_dssp CCCCCHHH
T ss_pred ccCcchhc
Confidence 99876553
No 87
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=127.14 Aligned_cols=78 Identities=28% Similarity=0.489 Sum_probs=72.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||.++|+++|+++|++||.|..|.+++ |||||+|.+.++|++|++.|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 4568999999999999999999999999999999873 49999999999999999999999999999999999
Q ss_pred CCCCch
Q psy1188 165 KPPSDK 170 (230)
Q Consensus 165 ~~~~~~ 170 (230)
+++..+
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 976543
No 88
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=127.64 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=69.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEe-cCEEEEEecCHHHHHHHHHHhCC-cEecCcEeEEEEeCCCCc
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGR-VERVKRI-KDYAFVHFEDRQEAITAMNELNG-QTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~-i~~~~i~-rg~aFV~F~~~e~A~~Ai~~lng-~~i~g~~l~V~~a~~~~~ 169 (230)
+.++|||+|||+++|+++|+++|++||. |..+.+. ++||||+|.+.++|++|++.||| ..|+|++|+|.|++++..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 4578999999999999999999999999 6655554 89999999999999999999999 999999999999997643
No 89
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=129.09 Aligned_cols=77 Identities=34% Similarity=0.532 Sum_probs=71.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999987 469999999999999999999999999999999999
Q ss_pred CCCCc
Q psy1188 165 KPPSD 169 (230)
Q Consensus 165 ~~~~~ 169 (230)
++...
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 96543
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=4.4e-20 Score=134.56 Aligned_cols=80 Identities=28% Similarity=0.474 Sum_probs=73.5
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEE
Q psy1188 91 TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162 (230)
Q Consensus 91 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~ 162 (230)
...+.++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34467899999999999999999999999999999987 6799999999999999999999999999999999
Q ss_pred EeCCCCch
Q psy1188 163 LAKPPSDK 170 (230)
Q Consensus 163 ~a~~~~~~ 170 (230)
|++++..+
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99976544
No 91
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=7.7e-20 Score=131.18 Aligned_cols=77 Identities=27% Similarity=0.425 Sum_probs=71.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
+.++|||+|||+++|+++|+++|+.||.|..|.++ +|||||+|.+.++|.+|++.|||..+.|++|+|.|++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 46789999999999999999999999999999997 5799999999999999999999999999999999999654
Q ss_pred ch
Q psy1188 169 DK 170 (230)
Q Consensus 169 ~~ 170 (230)
..
T Consensus 87 ~~ 88 (115)
T 3lqv_A 87 AF 88 (115)
T ss_dssp HT
T ss_pred hh
Confidence 33
No 92
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=129.57 Aligned_cols=76 Identities=32% Similarity=0.561 Sum_probs=71.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.||+..|.|++|+|.+++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 56789999999999999999999999999999987 4599999999999999999999999999999999999
Q ss_pred CCCc
Q psy1188 166 PPSD 169 (230)
Q Consensus 166 ~~~~ 169 (230)
++..
T Consensus 91 ~~~~ 94 (102)
T 1x5s_A 91 KSSD 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 93
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5e-19 Score=127.14 Aligned_cols=75 Identities=28% Similarity=0.418 Sum_probs=69.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..+.++|||+|||+++|+++|+++|++||.|..|++++ +||||+|.+.++|++|++.||+ .|.|++|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34668999999999999999999999999999999973 5999999999999999999998 89999999999
Q ss_pred eCCC
Q psy1188 164 AKPP 167 (230)
Q Consensus 164 a~~~ 167 (230)
+++.
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9854
No 94
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=129.17 Aligned_cols=75 Identities=32% Similarity=0.560 Sum_probs=70.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec-------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK-------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r-------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
+.++|||+|||.++|+++|+++|++||.|..|.+.+ |||||+|.+.++|++|++.|||..|.|++|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 457899999999999999999999999999999984 7999999999999999999999999999999999996
Q ss_pred CC
Q psy1188 167 PS 168 (230)
Q Consensus 167 ~~ 168 (230)
+.
T Consensus 86 ~~ 87 (116)
T 2fy1_A 86 PS 87 (116)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 95
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-20 Score=130.66 Aligned_cols=77 Identities=32% Similarity=0.604 Sum_probs=72.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|++|++.|||..|.|++|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999987 5799999999999999999999999999999999999
Q ss_pred CCCch
Q psy1188 166 PPSDK 170 (230)
Q Consensus 166 ~~~~~ 170 (230)
++..+
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 87554
No 96
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=8.4e-20 Score=125.68 Aligned_cols=77 Identities=29% Similarity=0.378 Sum_probs=71.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
.+.++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.||+..|.|++|+|.++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 356789999999999999999999999999999987 47999999999999999999999999999999999997
Q ss_pred CCc
Q psy1188 167 PSD 169 (230)
Q Consensus 167 ~~~ 169 (230)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 97
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=126.48 Aligned_cols=76 Identities=28% Similarity=0.456 Sum_probs=70.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
.+.++|||+|||+++|+++|+++|+.|| |..|.++ +|||||+|.+.++|++|| .||+..|.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 9999987 469999999999999999 9999999999999999
Q ss_pred eCCCCch
Q psy1188 164 AKPPSDK 170 (230)
Q Consensus 164 a~~~~~~ 170 (230)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9986543
No 98
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=127.35 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=72.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---------cCEEEEEecCHHHHHHHHHHh-CCcEecCcEeEEE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---------KDYAFVHFEDRQEAITAMNEL-NGQTVAGSTLEVS 162 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---------rg~aFV~F~~~e~A~~Ai~~l-ng~~i~g~~l~V~ 162 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.| |+..|.|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 456789999999999999999999999999999986 459999999999999999999 9999999999999
Q ss_pred EeCCCCch
Q psy1188 163 LAKPPSDK 170 (230)
Q Consensus 163 ~a~~~~~~ 170 (230)
|++++...
T Consensus 93 ~a~~~~~~ 100 (107)
T 2cph_A 93 WADSEVTV 100 (107)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99976543
No 99
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=125.35 Aligned_cols=74 Identities=30% Similarity=0.402 Sum_probs=69.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.+.++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++|++.||+..|.|++|+|.+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 356799999999999999999999999999999987 4699999999999999999999999999999999987
Q ss_pred C
Q psy1188 166 P 166 (230)
Q Consensus 166 ~ 166 (230)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 100
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=126.34 Aligned_cols=73 Identities=27% Similarity=0.453 Sum_probs=68.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEE--------EEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER--------VKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAG 156 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~--------~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g 156 (230)
.+..+|||+|||.++|+++|+++|++||.|.. ++++ +|||||+|.+.++|++|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45679999999999999999999999999999 8887 4599999999999999999999999999
Q ss_pred cEeEEEEeC
Q psy1188 157 STLEVSLAK 165 (230)
Q Consensus 157 ~~l~V~~a~ 165 (230)
++|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999985
No 101
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.2e-20 Score=130.37 Aligned_cols=74 Identities=23% Similarity=0.236 Sum_probs=69.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
..++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|||..|.|++|+|.|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 35689999999999999999999999999999986 689999999999999999999999999999999999854
No 102
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=2.4e-19 Score=126.86 Aligned_cols=73 Identities=26% Similarity=0.444 Sum_probs=69.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 467899999999999999999999999999999988 5699999999999999999999999999999999986
No 103
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.5e-20 Score=129.17 Aligned_cols=74 Identities=26% Similarity=0.364 Sum_probs=63.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCC--CeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G--~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.+|||+|||+++|+++|+++|++|| .|.+++++ +|||||+|.+.++|++|++.|||..|+|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3699999999999999999999999 99999987 4599999999999999999999999999999999999
Q ss_pred CCCc
Q psy1188 166 PPSD 169 (230)
Q Consensus 166 ~~~~ 169 (230)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 104
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.9e-19 Score=129.68 Aligned_cols=74 Identities=30% Similarity=0.436 Sum_probs=69.0
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..+.++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|++|++.|||..|+|++|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456899999999999999999999999999999987 46999999999999999999999999999999999
Q ss_pred eC
Q psy1188 164 AK 165 (230)
Q Consensus 164 a~ 165 (230)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 105
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=1.4e-19 Score=127.85 Aligned_cols=77 Identities=23% Similarity=0.438 Sum_probs=71.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEe---cCcEeEE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTV---AGSTLEV 161 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i---~g~~l~V 161 (230)
.+.++|||+|||.++|+++|+++|++||.|..|+++ +|||||+|.+.++|++|++.||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 356789999999999999999999999999999987 46999999999999999999999988 8999999
Q ss_pred EEeCCCCc
Q psy1188 162 SLAKPPSD 169 (230)
Q Consensus 162 ~~a~~~~~ 169 (230)
.+++++..
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99997643
No 106
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4.4e-19 Score=124.74 Aligned_cols=75 Identities=19% Similarity=0.388 Sum_probs=69.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|++|| |..|+++ +|||||+|.+.++|++|+ .||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3568999999999999999999999997 9999987 459999999999999999 99999999999999999
Q ss_pred CCCCc
Q psy1188 165 KPPSD 169 (230)
Q Consensus 165 ~~~~~ 169 (230)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97644
No 107
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=122.61 Aligned_cols=75 Identities=31% Similarity=0.422 Sum_probs=69.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
.+.++|||+|| ++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||..|.|++|+|.|++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 35679999996 89999999999999999999988 78999999999999999999999999999999999997643
No 108
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=128.14 Aligned_cols=77 Identities=32% Similarity=0.445 Sum_probs=70.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeE--------EEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--------RVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAG 156 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~--------~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g 156 (230)
.+.++|||+|||+++|+++|+++|++||.|. .|+++ +|||||+|.+.++|++|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3567999999999999999999999999998 58876 4699999999999999999999999999
Q ss_pred cEeEEEEeCCCCc
Q psy1188 157 STLEVSLAKPPSD 169 (230)
Q Consensus 157 ~~l~V~~a~~~~~ 169 (230)
++|+|.+++++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999997644
No 109
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=137.21 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCC--CeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYG--RVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G--~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..++|||+|||+++|+++|+++|+.|| .|.+|+++ +|||||+|.+.++|++||+.|||..|+|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 99999987 46999999999999999999999999999999999
Q ss_pred eCCC
Q psy1188 164 AKPP 167 (230)
Q Consensus 164 a~~~ 167 (230)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9854
No 110
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=1.3e-19 Score=132.73 Aligned_cols=76 Identities=30% Similarity=0.492 Sum_probs=71.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|++||+.|||..|.|++|+|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456789999999999999999999999999999987 469999999999999999999999999999999999
Q ss_pred CCCC
Q psy1188 165 KPPS 168 (230)
Q Consensus 165 ~~~~ 168 (230)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 9764
No 111
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-18 Score=124.36 Aligned_cols=74 Identities=28% Similarity=0.368 Sum_probs=69.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec-------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK-------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r-------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
+.++|||+|||+++|+++|+++|++||.|..|.+++ +||||+|.+.++|++|++.||+..|.|++|+|.+++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 567899999999999999999999999999999884 5999999999999999999999999999999999986
Q ss_pred C
Q psy1188 167 P 167 (230)
Q Consensus 167 ~ 167 (230)
.
T Consensus 94 ~ 94 (114)
T 2do0_A 94 A 94 (114)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=6.7e-20 Score=128.38 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=69.5
Q ss_pred CccEEEEecCCC------CCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecC-cE
Q psy1188 94 KVKVLYVRNLTQ------YCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAG-ST 158 (230)
Q Consensus 94 ~~~~lfV~nL~~------~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g-~~ 158 (230)
..++|||+|||. ++++++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356899999999 99999999999999999999986 5799999999999999999999999999 99
Q ss_pred eEEEEeCCC
Q psy1188 159 LEVSLAKPP 167 (230)
Q Consensus 159 l~V~~a~~~ 167 (230)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999853
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=2.8e-20 Score=137.40 Aligned_cols=117 Identities=26% Similarity=0.398 Sum_probs=74.4
Q ss_pred cceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeE
Q psy1188 44 TKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE 123 (230)
Q Consensus 44 g~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~ 123 (230)
.+|.+|+ +...+..|...+..+ ...++. ...+..+.. ...+.++|||+|||+++|+++|+++|++||.|.
T Consensus 6 ~~~~~~~-~~~~~~~a~~~~~g~---~~~g~~-~~~~~~~~~-----~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 6 HHHHHSS-GLVPRGSHMASMTGG---QQMGRG-SMSYGRPPP-----DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ----------------------------------CCSCCSCS-----SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccc-CCCchhhhhhhccCC---CCCCCC-CCCcCCCCC-----CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 4677785 555666666655444 222221 122333221 223467899999999999999999999999999
Q ss_pred EEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCch
Q psy1188 124 RVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 124 ~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
.|.++ +|||||+|.+.++|++|++.|||..|.|++|+|.|+++....
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 99987 459999999999999999999999999999999999976443
No 114
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=125.86 Aligned_cols=75 Identities=28% Similarity=0.500 Sum_probs=70.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeE-EEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcE----eE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVE-RVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGST----LE 160 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~-~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~----l~ 160 (230)
+.++|||+|||+++|+++|+++|++||.|. .|+++ +|||||+|.+.++|++|++.|||..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 567899999999999999999999999999 99987 369999999999999999999999999999 99
Q ss_pred EEEeCCCC
Q psy1188 161 VSLAKPPS 168 (230)
Q Consensus 161 V~~a~~~~ 168 (230)
|.||++..
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99999753
No 115
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=128.50 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=69.9
Q ss_pred CCccEEEE--ecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEe-----cCcEeEEEE
Q psy1188 93 SKVKVLYV--RNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTV-----AGSTLEVSL 163 (230)
Q Consensus 93 ~~~~~lfV--~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i-----~g~~l~V~~ 163 (230)
.++++||| +||++++|+++|+++|++||.|..|.++ ||||||+|.+.++|++|++.|||..| .|++|.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 35678999 7799999999999999999999999988 67999999999999999999999998 789999999
Q ss_pred eCCCC
Q psy1188 164 AKPPS 168 (230)
Q Consensus 164 a~~~~ 168 (230)
++...
T Consensus 103 a~~~p 107 (114)
T 2cq2_A 103 VEKVQ 107 (114)
T ss_dssp ESCCC
T ss_pred cccCc
Confidence 98543
No 116
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=3.4e-19 Score=121.83 Aligned_cols=72 Identities=26% Similarity=0.497 Sum_probs=68.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
.++|||+|||+++|+++|+++|++||.|..+.++ +|||||+|.+.++|++|+ .|||..+.|++|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4689999999999999999999999999999987 459999999999999999 9999999999999999986
Q ss_pred C
Q psy1188 167 P 167 (230)
Q Consensus 167 ~ 167 (230)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 117
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=124.96 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=68.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
..++|||+|||+++|+++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 46789999999999999999999999999766554 5799999999999999999999999999999999998
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
.+
T Consensus 94 ~~ 95 (98)
T 2cqp_A 94 GP 95 (98)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 118
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-19 Score=126.97 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=67.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
+.++|||+|||+++|+++|+++|++||.|.+|+++ ||||||+|.+.++|.+|+. +|+..|+|++|+|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 45789999999999999999999999999999997 5799999999999999998 899999999999999874
No 119
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=9.8e-19 Score=126.68 Aligned_cols=76 Identities=30% Similarity=0.353 Sum_probs=68.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--CE-EEEEecCHHHHHHHHHHhCCcEecC--cEeEEEEeCCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--DY-AFVHFEDRQEAITAMNELNGQTVAG--STLEVSLAKPPS 168 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--g~-aFV~F~~~e~A~~Ai~~lng~~i~g--~~l~V~~a~~~~ 168 (230)
....|||+||++.+|+++|+++|++||.|.+|.+.+ || |||+|.+.++|.+|+++|||..|.| ++|+|.+|+++.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 344578999999999999999999999999999873 76 9999999999999999999999987 699999999875
Q ss_pred c
Q psy1188 169 D 169 (230)
Q Consensus 169 ~ 169 (230)
-
T Consensus 104 l 104 (124)
T 2e5i_A 104 L 104 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 120
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=2.9e-19 Score=127.07 Aligned_cols=77 Identities=22% Similarity=0.387 Sum_probs=68.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||.++|+++|+++|+.||.|..|+++ +|||||+|.+.++|++|++.+ +..|+|++|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 356789999999999999999999999999999987 469999999999999999886 59999999999999
Q ss_pred CCCCch
Q psy1188 165 KPPSDK 170 (230)
Q Consensus 165 ~~~~~~ 170 (230)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987554
No 121
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=125.82 Aligned_cols=75 Identities=20% Similarity=0.341 Sum_probs=69.9
Q ss_pred CccEEEEecCCCCC------CHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcEecCc-EeE
Q psy1188 94 KVKVLYVRNLTQYC------TEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQTVAGS-TLE 160 (230)
Q Consensus 94 ~~~~lfV~nL~~~~------te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~-~l~ 160 (230)
..++|||+|||+++ |+++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|||..|.|+ +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 45789999999999 789999999999999999987 58999999999999999999999999998 999
Q ss_pred EEEeCCCC
Q psy1188 161 VSLAKPPS 168 (230)
Q Consensus 161 V~~a~~~~ 168 (230)
|.++.+..
T Consensus 94 V~~a~~~~ 101 (105)
T 2nlw_A 94 VNLFTDFD 101 (105)
T ss_dssp EECSCCCC
T ss_pred EEEcchHh
Confidence 99998653
No 122
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=121.67 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=67.5
Q ss_pred CccE-EEEecCCCCCCHHH----HHHHhhcC-CCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 94 KVKV-LYVRNLTQYCTEEK----LKEAFEQY-GRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~-lfV~nL~~~~te~~----L~~~F~~~-G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
++.+ |||+|||+++++++ |+++|++| |+|..| ..|+|||.|.+.++|++|++.|||..+.||+|+|.||+.+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 4556 99999999999988 55899999 599888 4599999999999999999999999999999999999987
Q ss_pred Cch
Q psy1188 168 SDK 170 (230)
Q Consensus 168 ~~~ 170 (230)
++.
T Consensus 85 sd~ 87 (96)
T 2diu_A 85 REL 87 (96)
T ss_dssp CCC
T ss_pred cce
Confidence 654
No 123
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=126.92 Aligned_cols=77 Identities=29% Similarity=0.433 Sum_probs=71.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhc-CCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcE-ecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQ-YGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQT-VAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~-i~g~~l~V~~a 164 (230)
+..+|||+|||+++|+++|+++|++ ||.|..|.++ +|||||+|.+.++|.+|++.||+.. |.|++|+|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 5678999999999999999999999 9999999986 5699999999999999999999999 99999999999
Q ss_pred CCCCch
Q psy1188 165 KPPSDK 170 (230)
Q Consensus 165 ~~~~~~ 170 (230)
+++..+
T Consensus 88 ~~~~~~ 93 (104)
T 2dhg_A 88 IPKASR 93 (104)
T ss_dssp CCCCSC
T ss_pred cCCCcC
Confidence 976543
No 124
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=6e-19 Score=128.44 Aligned_cols=76 Identities=26% Similarity=0.384 Sum_probs=69.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---cCE-EEEEecCHHHHHHHHHHhCCcEecC--cEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---KDY-AFVHFEDRQEAITAMNELNGQTVAG--STLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---rg~-aFV~F~~~e~A~~Ai~~lng~~i~g--~~l~V~~a~~~ 167 (230)
+.-.|||+||++.+|+++|+++|++||.|.+|.+. ++| |||+|.+.++|++|+++|||..|.| ++|+|+||+++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 44578899999999999999999999999999887 457 9999999999999999999999988 89999999976
Q ss_pred Cc
Q psy1188 168 SD 169 (230)
Q Consensus 168 ~~ 169 (230)
.-
T Consensus 107 ~l 108 (130)
T 3zzy_A 107 SL 108 (130)
T ss_dssp SC
T ss_pred ce
Confidence 43
No 125
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=128.13 Aligned_cols=75 Identities=24% Similarity=0.424 Sum_probs=70.1
Q ss_pred CccEEEEecCCCCCCHHHHH---HHhhcCCCeEEEEEec-----------CEEEEEecCHHHHHHHHHHhCCcEecCcEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLK---EAFEQYGRVERVKRIK-----------DYAFVHFEDRQEAITAMNELNGQTVAGSTL 159 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~---~~F~~~G~i~~~~i~r-----------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l 159 (230)
..++|||+|||+++++++|+ ++|++||+|..|.+.+ |||||+|.+.++|++|++.|||..|.|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 45689999999999999999 9999999999999882 599999999999999999999999999999
Q ss_pred EEEEeCCCC
Q psy1188 160 EVSLAKPPS 168 (230)
Q Consensus 160 ~V~~a~~~~ 168 (230)
+|.||+++.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999999763
No 126
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=126.98 Aligned_cols=73 Identities=33% Similarity=0.511 Sum_probs=69.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||..+.|++|+|.+++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 379999999999999999999999999999996 6799999999999999999999999999999999999754
No 127
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-19 Score=123.39 Aligned_cols=76 Identities=30% Similarity=0.481 Sum_probs=67.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEE----ecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR----IKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i----~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
.+.++|||+|||+++|+++|+++|++||.|.-+.. .++||||+|.+.++|++|++.||+..|.|++|+|.|++++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 35689999999999999999999999999843322 26799999999999999999999999999999999999753
No 128
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=126.60 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=70.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCC-eEEEEEe---------cCEEEEEecCHHHHHHHHHHhC--CcEecCcEeEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGR-VERVKRI---------KDYAFVHFEDRQEAITAMNELN--GQTVAGSTLEV 161 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~-i~~~~i~---------rg~aFV~F~~~e~A~~Ai~~ln--g~~i~g~~l~V 161 (230)
+.++|||+|||+++|+++|+++|++||. |..|.++ +|||||+|.+.++|++|++.|| +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4678999999999999999999999998 9999987 5799999999999999999996 58999999999
Q ss_pred EEeCCCCc
Q psy1188 162 SLAKPPSD 169 (230)
Q Consensus 162 ~~a~~~~~ 169 (230)
.|++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99997654
No 129
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=125.60 Aligned_cols=76 Identities=26% Similarity=0.427 Sum_probs=70.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.+++ |||||+|.+.++|++||+. |+..|.|++|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 4567999999999999999999999999999999884 5999999999999999988 999999999999999
Q ss_pred CCCCc
Q psy1188 165 KPPSD 169 (230)
Q Consensus 165 ~~~~~ 169 (230)
+++..
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 97654
No 130
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=133.16 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=69.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEE--------EEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLE 160 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~--------~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~ 160 (230)
+.++|||+|||+++|+++|+++|+.||.|..| .+. +|||||+|.+.++|.+|++.|||..|.|++|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 56789999999999999999999999998763 333 67999999999999999999999999999999
Q ss_pred EEEeCCCCchh
Q psy1188 161 VSLAKPPSDKK 171 (230)
Q Consensus 161 V~~a~~~~~~~ 171 (230)
|.+|++...+.
T Consensus 124 V~~a~~~~~~~ 134 (143)
T 3egn_A 124 VQFARSARPKQ 134 (143)
T ss_dssp EEECCCSCC--
T ss_pred EEECCCCCCcc
Confidence 99999876554
No 131
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-19 Score=129.42 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
..++|||+|||.++|+++|+++|+.||.|..|.++ +|||||+|.+.++|++|+ .|||..|.|++|+|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 45789999999999999999999999999999987 579999999999999999 999999999999999998
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
++
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 132
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=124.75 Aligned_cols=76 Identities=20% Similarity=0.416 Sum_probs=70.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEe--------cCc
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTV--------AGS 157 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i--------~g~ 157 (230)
.+.++|||+|||+++|+++|+++|+.||.|..|+++ +|||||+|.+.++|++|++.|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 356789999999999999999999999999999987 45999999999999999999999999 688
Q ss_pred EeEEEEeCCCC
Q psy1188 158 TLEVSLAKPPS 168 (230)
Q Consensus 158 ~l~V~~a~~~~ 168 (230)
+|.|.|++|+.
T Consensus 103 ~l~v~~a~p~~ 113 (114)
T 1x5o_A 103 PLLCKFSGPSS 113 (114)
T ss_dssp CBEEEECCCSC
T ss_pred ceeEEccCCCC
Confidence 89999999763
No 133
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.1e-18 Score=118.83 Aligned_cols=70 Identities=17% Similarity=0.384 Sum_probs=65.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
+.++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++ +++..|+|++|+|++|
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 56789999999999999999999999999999987 4599999999999999995 5889999999999986
No 134
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=1.6e-18 Score=126.03 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=71.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
..+.++|||+|||.++++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..|+|++|+|++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 3466899999999999999999999999999999986 579999999999999999999999999999999999
Q ss_pred CCCC
Q psy1188 165 KPPS 168 (230)
Q Consensus 165 ~~~~ 168 (230)
.+..
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9653
No 135
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=6.9e-19 Score=120.23 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
..++|||+|||+++|+++|+++|++| .|..+++. +|||||+|.+.++|++|++.|||..+.|++|+|.++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 35689999999999999999999999 99999886 789999999999999999999999999999999999754
No 136
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=3.3e-19 Score=128.00 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=66.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec-CEEEEEecCHHHHHHHHHHhCCcEecCcE-----eEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK-DYAFVHFEDRQEAITAMNELNGQTVAGST-----LEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r-g~aFV~F~~~e~A~~Ai~~lng~~i~g~~-----l~V~~a~~ 166 (230)
...+|||+|||+++|+++|+++|++||+|..|.+++ +||||+|.+.++|++||+.|||..|+|++ |+|..+.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 356899999999999999999999999999999998 89999999999999999999999999998 77777765
No 137
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=119.40 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=68.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
...+|||+|||+++|+++|+++|+.| .|..|+++ +|||||+|.+.++|++|++ ||+..|+|++|+|.++++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 45789999999999999999999999 99999987 4599999999999999999 999999999999999997
Q ss_pred CC
Q psy1188 167 PS 168 (230)
Q Consensus 167 ~~ 168 (230)
+.
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 138
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=2.4e-19 Score=124.11 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||+++|+++|+++|++||.|..+.++ ++||||+|.+.++|++|++.||+..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45789999999999999999999999999876665 4799999999999999999999999999999999986
Q ss_pred C
Q psy1188 166 P 166 (230)
Q Consensus 166 ~ 166 (230)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 139
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=126.03 Aligned_cols=74 Identities=26% Similarity=0.431 Sum_probs=67.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
...++|||+|||.++|+++|+++|+.|| |.+|+++ +|||||+|.+.++|++|+ .|||..|+|++|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4568999999999999999999999999 9999986 469999999999999999 9999999999999999
Q ss_pred eCCCC
Q psy1188 164 AKPPS 168 (230)
Q Consensus 164 a~~~~ 168 (230)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 99764
No 140
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.1e-19 Score=126.42 Aligned_cols=78 Identities=26% Similarity=0.459 Sum_probs=70.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCe----EEEEEe----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRV----ERVKRI----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i----~~~~i~----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|+.||.| ..+++. +|||||+|.+.++|++|++.|||..|.|++|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 356899999999999999999999999998 566655 689999999999999999999999999999999999
Q ss_pred CCCCch
Q psy1188 165 KPPSDK 170 (230)
Q Consensus 165 ~~~~~~ 170 (230)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 976543
No 141
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=1.8e-18 Score=124.75 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=66.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCC---eEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGR---VERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~---i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..++|||+|||+++|+++|+++|+.||. |..|+++ +|||||+|.+.++|++||+ ||+..|+|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4678999999999999999999999999 8888887 5699999999999999998 999999999999999
Q ss_pred eC
Q psy1188 164 AK 165 (230)
Q Consensus 164 a~ 165 (230)
+.
T Consensus 95 a~ 96 (118)
T 2db1_A 95 SH 96 (118)
T ss_dssp EC
T ss_pred CC
Confidence 97
No 142
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=121.93 Aligned_cols=77 Identities=30% Similarity=0.511 Sum_probs=67.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-----cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
.+.++|||+|||+++|+++|+++|+.|+.|.-+... ++||||+|.+.++|++|++.||+..|.|++|+|.|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 456789999999999999999999998755444332 479999999999999999999999999999999999976
Q ss_pred Cc
Q psy1188 168 SD 169 (230)
Q Consensus 168 ~~ 169 (230)
..
T Consensus 93 ~~ 94 (102)
T 2fc8_A 93 GE 94 (102)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 143
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=8.4e-19 Score=121.63 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=69.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEE---EecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK---RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~---i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
.+.++|||+|||+++|+++|+++|++||.|..+. ..+|||||+|.+.++|.+|++.|||..|.|++|+|.+++++..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 3568999999999999999999999999988772 2267999999999999999999999999999999999997653
No 144
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-19 Score=122.73 Aligned_cols=72 Identities=28% Similarity=0.420 Sum_probs=67.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|++|++.|||..|.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 56789999999999999999999999999999987 4699999999999999999999999999999988765
No 145
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.3e-19 Score=126.59 Aligned_cols=75 Identities=24% Similarity=0.447 Sum_probs=69.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||+++|+++|+++|+.||.|..|.++ +|||||+|.+.++|++||+. |+..|+|++|+|.+++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 45799999999999999999999999999999988 35999999999999999988 9999999999999999
Q ss_pred CCCc
Q psy1188 166 PPSD 169 (230)
Q Consensus 166 ~~~~ 169 (230)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 146
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=8.9e-19 Score=132.18 Aligned_cols=75 Identities=27% Similarity=0.356 Sum_probs=69.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe----cCEEEEEecCHHHHHHHHHHhCCcEecC--cEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----KDYAFVHFEDRQEAITAMNELNGQTVAG--STLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~----rg~aFV~F~~~e~A~~Ai~~lng~~i~g--~~l~V~~a~~~ 167 (230)
...+|||+||++++|+++|+++|++||+|.+|.+. ++||||+|.+.++|++|++.|||..|.| ++|+|+|++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 45679999999999999999999999999999987 4599999999999999999999999965 99999999986
Q ss_pred C
Q psy1188 168 S 168 (230)
Q Consensus 168 ~ 168 (230)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 147
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-18 Score=120.07 Aligned_cols=75 Identities=27% Similarity=0.404 Sum_probs=68.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.+++ |||||+|.+.++|++|++ +++.|+|++|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 3567899999999999999999999999999999873 599999999999999997 478999999999999
Q ss_pred CCCCc
Q psy1188 165 KPPSD 169 (230)
Q Consensus 165 ~~~~~ 169 (230)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 97643
No 148
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=122.33 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=67.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCe-EEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRV-ERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i-~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|+.||.| ..|+++ +|||||+|.+.++|++||+. |+..|+|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356789999999999999999999999999 788886 67999999999999999977 999999999999999
Q ss_pred CC
Q psy1188 165 KP 166 (230)
Q Consensus 165 ~~ 166 (230)
.+
T Consensus 92 ~~ 93 (114)
T 2cpy_A 92 TL 93 (114)
T ss_dssp CH
T ss_pred CH
Confidence 84
No 149
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=1.8e-18 Score=118.49 Aligned_cols=73 Identities=33% Similarity=0.490 Sum_probs=61.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcE--ecCcEeEEEEeCCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQT--VAGSTLEVSLAKPPS 168 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~--i~g~~l~V~~a~~~~ 168 (230)
+..+|||+|||+++|+++|+++|++||.|.+|+++ ||||||+|.+.++|++ |++.. +.|++|.|.+|.++.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 56789999999999999999999999999999998 6899999999999983 46664 569999999999875
Q ss_pred ch
Q psy1188 169 DK 170 (230)
Q Consensus 169 ~~ 170 (230)
.+
T Consensus 86 ~~ 87 (89)
T 3d2w_A 86 NK 87 (89)
T ss_dssp --
T ss_pred cC
Confidence 43
No 150
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=3.1e-19 Score=118.16 Aligned_cols=67 Identities=24% Similarity=0.427 Sum_probs=63.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
+|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++ ||+..|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999987 4699999999999999996 9999999999999986
No 151
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=131.41 Aligned_cols=75 Identities=25% Similarity=0.424 Sum_probs=69.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEE--EEEe--------cCEEEEEecCHHHHHHHHHHhCCc----EecCcE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVER--VKRI--------KDYAFVHFEDRQEAITAMNELNGQ----TVAGST 158 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~--~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~----~i~g~~ 158 (230)
...++|||+|||+++|+++|+++|++||.|.. |+++ ||||||+|.+. +|.+|++.|||. .|.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45679999999999999999999999999976 8876 57999999999 999999999999 999999
Q ss_pred eEEEEeCCCC
Q psy1188 159 LEVSLAKPPS 168 (230)
Q Consensus 159 l~V~~a~~~~ 168 (230)
|+|++++++.
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999999754
No 152
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.6e-18 Score=125.86 Aligned_cols=74 Identities=23% Similarity=0.457 Sum_probs=69.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||.++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|+ .|||..|+|++|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45789999999999999999999999999999987 469999999999999999 899999999999999999
Q ss_pred CCC
Q psy1188 166 PPS 168 (230)
Q Consensus 166 ~~~ 168 (230)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 153
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=4e-19 Score=119.51 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=62.9
Q ss_pred cEEEEecCCCCC------CHHHHHHHhhcCCCeEEEEEe------cCEEEEEecCHHHHHHHHHHhCCcEecCc-EeEEE
Q psy1188 96 KVLYVRNLTQYC------TEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNGQTVAGS-TLEVS 162 (230)
Q Consensus 96 ~~lfV~nL~~~~------te~~L~~~F~~~G~i~~~~i~------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~-~l~V~ 162 (230)
++|||+|||.++ |+++|+++|++||.|.+|.+. +|||||+|.+.++|++|++.|||..|.|+ +|+|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 579999999999 789999999999999999987 58999999999999999999999999999 88873
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=118.84 Aligned_cols=75 Identities=25% Similarity=0.344 Sum_probs=69.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEE-Eec----CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-RIK----DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~-i~r----g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
..++|||+|||+++|+++|+++|++||.|..|+ +++ +.|||+|.+.++|.+|++.|||..|+|++|+|.++.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 457899999999999999999999999999995 663 359999999999999999999999999999999999873
No 155
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=126.74 Aligned_cols=73 Identities=30% Similarity=0.550 Sum_probs=68.0
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
..+.++|||+|||+++|+++|+++|++||.|..++++ +|||||+|.+.++|++|++.|||..|.|++|+|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3467899999999999999999999999999999986 56999999999999999999999999999999998
Q ss_pred e
Q psy1188 164 A 164 (230)
Q Consensus 164 a 164 (230)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 156
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2.1e-19 Score=123.26 Aligned_cols=72 Identities=35% Similarity=0.587 Sum_probs=65.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
++|||+|||.++++++|+++|++||.|..|.+. +|||||+|.+.+ |.+|++.|||..++|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999987 469999999999 99999999999999999999999975
Q ss_pred C
Q psy1188 168 S 168 (230)
Q Consensus 168 ~ 168 (230)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 157
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=119.87 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=67.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEE-EEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVER-VKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~-~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
...+|||+|||+++|+++|+++|+.||.|.. |.++ +|||||+|.+.++|++||+. |+..|+|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECC
Confidence 5678999999999999999999999999987 7775 67999999999999999987 9999999999999998
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
++
T Consensus 93 ~~ 94 (104)
T 1wg5_A 93 RA 94 (104)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 158
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=5e-19 Score=123.98 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=67.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+..+|||+|||+++|+++|+++|++||.|.. .++ +|||||+|.+.++|++|++ |||..|.|++|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5679999999999999999999999998766 222 6899999999999999998 99999999999999999
Q ss_pred CCCch
Q psy1188 166 PPSDK 170 (230)
Q Consensus 166 ~~~~~ 170 (230)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76543
No 159
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=4.3e-18 Score=134.29 Aligned_cols=74 Identities=28% Similarity=0.400 Sum_probs=69.9
Q ss_pred CccEEEEecCC-CCCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 94 KVKVLYVRNLT-QYCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 94 ~~~~lfV~nL~-~~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
++.+|||+||| +++|+++|+++|++||.|.+|+++ +|||||+|.+.++|++||+.|||..+.|++|+|.+++.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 45789999999 899999999999999999999998 589999999999999999999999999999999999854
No 160
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-19 Score=128.14 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=66.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
....+|||+|||+++|+++|+++|+.||.|..+.++ +|||||+|.+.++|++||+ ||+..|+|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 355799999999999999999999999999773333 6799999999999999998 9999999999999999
Q ss_pred CC
Q psy1188 165 KP 166 (230)
Q Consensus 165 ~~ 166 (230)
.+
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 84
No 161
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=118.08 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC---EEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD---YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg---~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
..++|||+|||+++|+++|+++|++||.|.+|.+.+. ||||+|.+.++|++|++ |||..|+|++|+|.++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 4568999999999999999999999999999833321 99999999999999999 99999999999999988653
No 162
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-19 Score=117.04 Aligned_cols=67 Identities=22% Similarity=0.447 Sum_probs=64.0
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
+|||+|||+++|+++|+++|++||.|..+.++ +|||||+|.+.++|++|++.++ ..++|++|+|++|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 69999999999999999999999999999987 4699999999999999999999 9999999999987
No 163
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=3.2e-18 Score=123.89 Aligned_cols=76 Identities=30% Similarity=0.408 Sum_probs=70.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCch
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
.+.++|||+|| ++|+++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..|.|++|+|.|++++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 45689999996 79999999999999999999998 789999999999999999999999999999999999976543
No 164
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=122.62 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=67.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCC---eEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGR---VERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~---i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
...+|||+|||+++|+++|+++|+.||. |..|+++ +|||||+|.+.++|++||+ ||+..|+|+.|+|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYE 88 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEE
Confidence 5678999999999999999999999998 8899887 5699999999999999998 999999999999999
Q ss_pred eCC
Q psy1188 164 AKP 166 (230)
Q Consensus 164 a~~ 166 (230)
+.+
T Consensus 89 a~~ 91 (107)
T 2lmi_A 89 INN 91 (107)
T ss_dssp CCH
T ss_pred CCH
Confidence 984
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=7e-18 Score=114.71 Aligned_cols=69 Identities=30% Similarity=0.475 Sum_probs=65.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcC----C-------CeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQY----G-------RVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLE 160 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~----G-------~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~ 160 (230)
+.++|||+|||+++|+++|+++|++| | .|.++.+. +|||||+|.+.++|++|+ .|||..+.|++|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 56789999999999999999999999 8 99999988 789999999999999999 9999999999999
Q ss_pred EEE
Q psy1188 161 VSL 163 (230)
Q Consensus 161 V~~ 163 (230)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 166
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=120.24 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=65.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
...+|||+|||+++|+++|+++|+.||.+ .|+++ +|||||+|.+.++|++|| .+|+..|+|+.|+|.++.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCC
Confidence 45789999999999999999999999954 88887 569999999999999999 5799999999999999985
Q ss_pred C
Q psy1188 167 P 167 (230)
Q Consensus 167 ~ 167 (230)
.
T Consensus 92 ~ 92 (102)
T 1wez_A 92 A 92 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=5.1e-18 Score=125.14 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=66.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCC---eEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGR---VERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~---i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
...+|||+|||+++|+++|+++|+.||. |..|+++ +|||||+|.+.++|++||+ ||+..|+|++|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4578999999999999999999999999 7888887 5699999999999999998 999999999999999
Q ss_pred eC
Q psy1188 164 AK 165 (230)
Q Consensus 164 a~ 165 (230)
+.
T Consensus 122 a~ 123 (136)
T 2hgl_A 122 SH 123 (136)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 168
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=2.1e-17 Score=144.19 Aligned_cols=77 Identities=26% Similarity=0.551 Sum_probs=71.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|.++|++||.|..|.|+ +|||||+|.+.++|.+||+.|||..|.|++|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 356789999999999999999999999999999986 579999999999999999999999999999999999
Q ss_pred CCCCc
Q psy1188 165 KPPSD 169 (230)
Q Consensus 165 ~~~~~ 169 (230)
+++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 97543
No 169
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-19 Score=129.92 Aligned_cols=75 Identities=25% Similarity=0.428 Sum_probs=69.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEE--------EEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCc
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVER--------VKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGS 157 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~--------~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~ 157 (230)
+.++|||+|||.++|+++|+++|++||.|.. |+++ +|||||+|.+.++|++|++.|||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 5678999999999999999999999999988 7766 46999999999999999999999999999
Q ss_pred EeEEEEeCCCC
Q psy1188 158 TLEVSLAKPPS 168 (230)
Q Consensus 158 ~l~V~~a~~~~ 168 (230)
+|+|.+++++.
T Consensus 86 ~l~V~~a~~~~ 96 (116)
T 2lcw_A 86 PIKVSFATRRA 96 (116)
Confidence 99999999653
No 170
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=118.51 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=65.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
...+|||+|||+++|+++|+++|+.| .|..|.|+ +|||||+|.+.++|++|| .||+..|+||.|+|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34789999999999999999999999 89999987 679999999999999999 799999999999999886
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=8.5e-17 Score=132.44 Aligned_cols=77 Identities=25% Similarity=0.449 Sum_probs=71.4
Q ss_pred CCccEEEEecCCCCCCHHHHH----HHhhcCCCeEEEEEec-----CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEE
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLK----EAFEQYGRVERVKRIK-----DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~----~~F~~~G~i~~~~i~r-----g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~ 163 (230)
.+.++|||+|||+++|+++|+ ++|+.||.|.+|++.+ |||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 357799999999999999977 8999999999999874 8999999999999999999999999999999999
Q ss_pred eCCCCc
Q psy1188 164 AKPPSD 169 (230)
Q Consensus 164 a~~~~~ 169 (230)
++....
T Consensus 87 a~~~~~ 92 (282)
T 3pgw_A 87 AKTDSD 92 (282)
T ss_pred eccCcc
Confidence 987654
No 172
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.3e-18 Score=116.21 Aligned_cols=74 Identities=32% Similarity=0.443 Sum_probs=64.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCc
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~ 169 (230)
+.++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|++|+.. ...+.|++|+|.+++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 46789999999999999999999999999999998 68999999999999765321 3356999999999997644
No 173
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.73 E-value=9.9e-18 Score=134.37 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=75.7
Q ss_pred eeeCceeeeecCCCCCCCCccCCCCccEEEEecCCCCC---------CHHHHHHHhhcCCCeEEEEEe--cCEEEEEecC
Q psy1188 70 LSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYC---------TEEKLKEAFEQYGRVERVKRI--KDYAFVHFED 138 (230)
Q Consensus 70 ~~~~~~i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~---------te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~ 138 (230)
.+.|+.....+....... .......++|||+||+.++ ++++|+++|++||+|.+|+|+ ||||||+|.+
T Consensus 110 D~fGr~k~~~~~d~~~g~-gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~ 188 (240)
T 3u1l_A 110 DCFGREKFADYREDMGGI-GSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKY 188 (240)
T ss_dssp CTTSSBCGGGTC----------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESS
T ss_pred ccccchhcccchhcccCc-CccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCC
Confidence 444655444443322211 1123457899999999998 799999999999999999998 7999999999
Q ss_pred HHHHHHHHHHhCCcEe------------cCcEeEEEEeCCCC
Q psy1188 139 RQEAITAMNELNGQTV------------AGSTLEVSLAKPPS 168 (230)
Q Consensus 139 ~e~A~~Ai~~lng~~i------------~g~~l~V~~a~~~~ 168 (230)
.++|+.|+++|+|..| .|+.|.|.||++..
T Consensus 189 ~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 189 QANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred HHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 9999999999999999 89999999999653
No 174
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=1.9e-18 Score=114.29 Aligned_cols=67 Identities=25% Similarity=0.479 Sum_probs=62.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
+|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++. ++..+.|++|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 49999999999999999999999999999986 56999999999999999975 999999999999986
No 175
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.7e-17 Score=127.89 Aligned_cols=76 Identities=25% Similarity=0.417 Sum_probs=71.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.+.++|||+|||+++|+++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..|.|++|+|.||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 456899999999999999999999999999999997 4799999999999999999999999999999999998
Q ss_pred CCC
Q psy1188 166 PPS 168 (230)
Q Consensus 166 ~~~ 168 (230)
+..
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 643
No 176
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=3.2e-17 Score=129.93 Aligned_cols=76 Identities=24% Similarity=0.407 Sum_probs=70.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||+++|+++|+++|++||+|.+|+++ +|||||+|.+.++|.+|++.+|+..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56789999999999999999999999999999987 3599999999999999999999999999999999998
Q ss_pred CCCc
Q psy1188 166 PPSD 169 (230)
Q Consensus 166 ~~~~ 169 (230)
....
T Consensus 94 ~~~~ 97 (213)
T 4f02_A 94 RDPS 97 (213)
T ss_dssp CCTH
T ss_pred cccc
Confidence 7654
No 177
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=3.8e-17 Score=124.03 Aligned_cols=76 Identities=32% Similarity=0.462 Sum_probs=70.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||+++|+++|+++|+.||.|.+|.++ +|||||+|.+.++|.+|++.|||..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45789999999999999999999999999999986 3699999999999999999999999999999999999
Q ss_pred CCCc
Q psy1188 166 PPSD 169 (230)
Q Consensus 166 ~~~~ 169 (230)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7653
No 178
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=5.5e-17 Score=122.82 Aligned_cols=75 Identities=35% Similarity=0.552 Sum_probs=70.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEec--------CEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~r--------g~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
.++|||+|||+++|+++|+++|+.||.|.++.+++ |||||+|.+.++|.+|++.|||..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 46899999999999999999999999999999873 6999999999999999999999999999999999997
Q ss_pred CCc
Q psy1188 167 PSD 169 (230)
Q Consensus 167 ~~~ 169 (230)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 179
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=9.5e-18 Score=117.62 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=68.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
..++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++ ++..++|++|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 45789999999999999999999999999999987 4799999999999999997 99999999999999996
Q ss_pred CCc
Q psy1188 167 PSD 169 (230)
Q Consensus 167 ~~~ 169 (230)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 643
No 180
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=121.16 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=64.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCe----EEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRV----ERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i----~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~ 162 (230)
...+|||+|||+++|+++|+++|++||.| ..|.++ +|||||+|.+.++|++||+. |+..|+||.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 45689999999999999999999999975 577776 57999999999999999976 9999999999999
Q ss_pred EeC
Q psy1188 163 LAK 165 (230)
Q Consensus 163 ~a~ 165 (230)
.+.
T Consensus 101 ~a~ 103 (123)
T 2dha_A 101 RST 103 (123)
T ss_dssp EEC
T ss_pred ECC
Confidence 986
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=1.1e-16 Score=125.12 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=78.4
Q ss_pred CeeeeeCceeeeecCCCCCCCCc----cCCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEE
Q psy1188 67 KHLLSRGCDIIVDWADPQEEPDT----ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVH 135 (230)
Q Consensus 67 ~~~~~~~~~i~v~~a~~~~~~~~----~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~ 135 (230)
..+.+.+....+........+.. ......++|||+|||+++|+++|+++|++||.|..|+++ +|||||+
T Consensus 77 ~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVe 156 (193)
T 2voo_A 77 ELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVV 156 (193)
T ss_dssp CCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEE
T ss_pred ceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEE
Confidence 45667666666655532222111 011235789999999999999999999999999999987 5799999
Q ss_pred ecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCCch
Q psy1188 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170 (230)
Q Consensus 136 F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~~~ 170 (230)
|.+.++|++|++.++ ..++|++|+|.+++.-..+
T Consensus 157 F~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~~~ 190 (193)
T 2voo_A 157 FDSIESAKKFVETPG-QKYKETDLLILFKDDYFAK 190 (193)
T ss_dssp ESSHHHHHHHHHCTT-CEETTEECEEEETTTC---
T ss_pred ECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHHHH
Confidence 999999999997654 5999999999999865443
No 182
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=5.8e-18 Score=125.26 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=67.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~ 166 (230)
..++|||+|||+++|+++|+++|++|| |..|.|+ +|||||+|.+.++|++|| .+|+..|+|+.|+|.++.+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 456899999999999999999999999 6789887 579999999999999999 8899999999999999986
Q ss_pred CC
Q psy1188 167 PS 168 (230)
Q Consensus 167 ~~ 168 (230)
+.
T Consensus 123 ~~ 124 (139)
T 2hgn_A 123 TG 124 (139)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 183
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.2e-17 Score=121.72 Aligned_cols=73 Identities=32% Similarity=0.550 Sum_probs=69.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
++|||+|||+++|+++|+++|++||.|.+|.++ +|||||+|.+.++|.+|++.|||..+.|++|+|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 479999999999999999999999999999997 4699999999999999999999999999999999998654
No 184
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=6.6e-17 Score=117.45 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=64.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeE--EEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~--~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
...+|||+|||+++|+++|+++|+.| .|. .|+|+ +|||||+|.+.++|++||+. ++..|+||+|+|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEEC
Confidence 45789999999999999999999999 676 88887 67999999999999999975 789999999999998
Q ss_pred C
Q psy1188 165 K 165 (230)
Q Consensus 165 ~ 165 (230)
.
T Consensus 119 ~ 119 (126)
T 2hgm_A 119 S 119 (126)
T ss_dssp C
T ss_pred C
Confidence 6
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=1.2e-16 Score=128.00 Aligned_cols=76 Identities=36% Similarity=0.521 Sum_probs=71.9
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 93 SKVKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 93 ~~~~~lfV~nL~~-~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
.+.++|||+|||+ ++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.|||..|.|++|+|.++++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 4568999999999 99999999999999999999999 6899999999999999999999999999999999999663
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.1e-16 Score=110.30 Aligned_cols=77 Identities=19% Similarity=0.354 Sum_probs=68.1
Q ss_pred CCccEEEEecCCCCCC-----------HHHHHHHhhcCCCeEEEEEe----cCEEEEEecCHHHHHHHHHHhCCcEecCc
Q psy1188 93 SKVKVLYVRNLTQYCT-----------EEKLKEAFEQYGRVERVKRI----KDYAFVHFEDRQEAITAMNELNGQTVAGS 157 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~t-----------e~~L~~~F~~~G~i~~~~i~----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~ 157 (230)
.++++|+|.||....+ +++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|||..|+|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3578999999943332 58999999999999999776 78999999999999999999999999999
Q ss_pred EeEEEEeCCCCc
Q psy1188 158 TLEVSLAKPPSD 169 (230)
Q Consensus 158 ~l~V~~a~~~~~ 169 (230)
+|+|.++.++..
T Consensus 93 ~l~v~~a~~~~~ 104 (112)
T 2dit_A 93 QITAQAWDGTTD 104 (112)
T ss_dssp ECEEEECCSCCC
T ss_pred EEEEEEeCCCCC
Confidence 999999997643
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=3.6e-16 Score=127.61 Aligned_cols=77 Identities=31% Similarity=0.446 Sum_probs=71.9
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 91 TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 91 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
...+.++|||+|||+++|+++|+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.++.+.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 34566899999999999999999999999999999998 789999999999999999999999999999999999863
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=3.1e-16 Score=121.99 Aligned_cols=75 Identities=25% Similarity=0.448 Sum_probs=68.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
.+.++|||+|||+++|+++|+++|+.||.|.+|.++ +|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 356899999999999999999999999999999987 45999999999999999966 999999999999999
Q ss_pred CCCC
Q psy1188 165 KPPS 168 (230)
Q Consensus 165 ~~~~ 168 (230)
.+..
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 8654
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=6.5e-16 Score=108.85 Aligned_cols=74 Identities=28% Similarity=0.415 Sum_probs=65.9
Q ss_pred CCccEEEEecCCC-----CCCHHHHHHHhhcCCCeEEEEEe---------cCEEEEEecCHHHHHHHHHHhCCcEecCcE
Q psy1188 93 SKVKVLYVRNLTQ-----YCTEEKLKEAFEQYGRVERVKRI---------KDYAFVHFEDRQEAITAMNELNGQTVAGST 158 (230)
Q Consensus 93 ~~~~~lfV~nL~~-----~~te~~L~~~F~~~G~i~~~~i~---------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~ 158 (230)
.++++|+|.||.. +-++++|++.|++||.|.+|.|+ +|||||+|.+.++|.+|++.|||..+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3577899999952 33789999999999999999987 469999999999999999999999999999
Q ss_pred eEEEEeCC
Q psy1188 159 LEVSLAKP 166 (230)
Q Consensus 159 l~V~~a~~ 166 (230)
|+|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999984
No 190
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=6e-16 Score=122.16 Aligned_cols=77 Identities=21% Similarity=0.412 Sum_probs=70.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||.++|+++|+++|+.||.|..|+++ +|||||+|.+.++|.+|++.||+..|.|++|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45789999999999999999999999999999985 5799999999999999999999999999999999998
Q ss_pred CCCch
Q psy1188 166 PPSDK 170 (230)
Q Consensus 166 ~~~~~ 170 (230)
.....
T Consensus 107 ~~~~~ 111 (216)
T 2qfj_A 107 NIGQA 111 (216)
T ss_dssp CCGGG
T ss_pred Ccccc
Confidence 76544
No 191
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.8e-16 Score=112.18 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=64.5
Q ss_pred cEEEEecC----CCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecC----H-HH---HHHHHH--HhCCcE
Q psy1188 96 KVLYVRNL----TQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFED----R-QE---AITAMN--ELNGQT 153 (230)
Q Consensus 96 ~~lfV~nL----~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~----~-e~---A~~Ai~--~lng~~ 153 (230)
..|||+|| |+.+++++|+++|+.||+|.+|.++ +|||||+|.+ . ++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 9999999999999999999999988 6799999996 3 32 899988 789999
Q ss_pred ecCcEeEEEEeCCCC
Q psy1188 154 VAGSTLEVSLAKPPS 168 (230)
Q Consensus 154 i~g~~l~V~~a~~~~ 168 (230)
|+|++|+|.+-+...
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999988543
No 192
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=113.26 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=62.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-----------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-----------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-----------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~ 162 (230)
..++|||+|||+++|+++|+++|++||.|. +.++ +|||||+|.+.++|++||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 6654 5799999999999999999984 4788888887
Q ss_pred EeCCCC
Q psy1188 163 LAKPPS 168 (230)
Q Consensus 163 ~a~~~~ 168 (230)
.+.+..
T Consensus 84 ~~~~~~ 89 (114)
T 2dnl_A 84 SSPTIK 89 (114)
T ss_dssp CCSSSC
T ss_pred cCCCcC
Confidence 666443
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=1.6e-16 Score=124.09 Aligned_cols=74 Identities=36% Similarity=0.535 Sum_probs=70.4
Q ss_pred ccEEEEecCCC-CCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 95 VKVLYVRNLTQ-YCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 95 ~~~lfV~nL~~-~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
.++|||+|||+ ++|+++|+++|++||.|..|+++ +|||||+|.+.++|.+|++.|||..+.|++|+|.++++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 46899999999 99999999999999999999998 6899999999999999999999999999999999999764
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=1.5e-15 Score=115.57 Aligned_cols=74 Identities=28% Similarity=0.431 Sum_probs=68.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcC----C-------CeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQY----G-------RVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLE 160 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~----G-------~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~ 160 (230)
+.++|||+|||+++|+++|+++|++| | .|.++.+. +|||||+|.+.++|.+|+ .|||..+.|++|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46789999999999999999999999 7 78888877 789999999999999999 9999999999999
Q ss_pred EEEeCCCC
Q psy1188 161 VSLAKPPS 168 (230)
Q Consensus 161 V~~a~~~~ 168 (230)
|.++.+..
T Consensus 82 v~~~~~~~ 89 (172)
T 2g4b_A 82 IRRPHDYQ 89 (172)
T ss_dssp EECCSSCC
T ss_pred ecCCcccC
Confidence 99988653
No 195
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.5e-15 Score=115.78 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=67.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe----------cCEEEEEecCHHHHHHHHHHhCCcEec---CcEeE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----------KDYAFVHFEDRQEAITAMNELNGQTVA---GSTLE 160 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~----------rg~aFV~F~~~e~A~~Ai~~lng~~i~---g~~l~ 160 (230)
+.++|||+|||+++|+++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.||+..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45789999999999999999999999999999876 469999999999999999999998775 67899
Q ss_pred EEEeCCCC
Q psy1188 161 VSLAKPPS 168 (230)
Q Consensus 161 V~~a~~~~ 168 (230)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 99887544
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=2.4e-15 Score=117.05 Aligned_cols=74 Identities=28% Similarity=0.424 Sum_probs=67.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcC----C-------CeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecCcEeE
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQY----G-------RVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAGSTLE 160 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~----G-------~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~ 160 (230)
..++|||+|||+++|+++|+++|+.| | .|..+.+. +|||||+|.+.++|++|+ .|||..|.|++|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 35789999999999999999999999 5 77777776 789999999999999999 8999999999999
Q ss_pred EEEeCCCC
Q psy1188 161 VSLAKPPS 168 (230)
Q Consensus 161 V~~a~~~~ 168 (230)
|.++.+..
T Consensus 82 v~~~~~~~ 89 (198)
T 2yh0_A 82 IRRPHDYQ 89 (198)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99998653
No 197
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.9e-15 Score=114.49 Aligned_cols=72 Identities=22% Similarity=0.440 Sum_probs=66.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+.++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 45789999999999999999999999999999987 36999999999999999974 679999999999998
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 64
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=6.5e-16 Score=118.18 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=66.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHhhcCCCeEEE-----EE--ecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KR--IKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 93 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~-----~i--~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.+.++|||+|||+++|+++|+++|+.||.+..+ .. .+|||||+|.+.++|.+|+ +|||..|.|++|+|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 356799999999999999999999999865442 21 2689999999999999999 599999999999999999
Q ss_pred CCCc
Q psy1188 166 PPSD 169 (230)
Q Consensus 166 ~~~~ 169 (230)
++..
T Consensus 90 ~~~~ 93 (175)
T 1fje_B 90 GRDS 93 (175)
T ss_dssp CSSC
T ss_pred Cccc
Confidence 7644
No 199
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.59 E-value=4.1e-15 Score=125.18 Aligned_cols=74 Identities=27% Similarity=0.397 Sum_probs=66.0
Q ss_pred CCCccEEEEec--CCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEec---Cc--EeEEE
Q psy1188 92 MSKVKVLYVRN--LTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVA---GS--TLEVS 162 (230)
Q Consensus 92 ~~~~~~lfV~n--L~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~---g~--~l~V~ 162 (230)
..++.+|||+| |+.++|+++|+++|++||+|.+|.+. ||||||+|.+.++|++|+++|||..+- |+ +|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 34678999999 57899999999999999999999885 789999999999999999999999873 45 78888
Q ss_pred EeC
Q psy1188 163 LAK 165 (230)
Q Consensus 163 ~a~ 165 (230)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 885
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=7.1e-15 Score=103.52 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=65.1
Q ss_pred CccEEEEecC--CCCCC--------HHHHHHHhhcCCCeEEEEEe----------cCEEEEEecCHHHHHHHHHHhCCcE
Q psy1188 94 KVKVLYVRNL--TQYCT--------EEKLKEAFEQYGRVERVKRI----------KDYAFVHFEDRQEAITAMNELNGQT 153 (230)
Q Consensus 94 ~~~~lfV~nL--~~~~t--------e~~L~~~F~~~G~i~~~~i~----------rg~aFV~F~~~e~A~~Ai~~lng~~ 153 (230)
+++.|.|.|+ |.++. +++|++.|++||.|.+|.|+ +|||||+|.+.++|.+|+++|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5778999998 44443 36999999999999999987 4799999999999999999999999
Q ss_pred ecCcEeEEEEeCC
Q psy1188 154 VAGSTLEVSLAKP 166 (230)
Q Consensus 154 i~g~~l~V~~a~~ 166 (230)
++||+|+|.++.+
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999873
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=2.1e-14 Score=103.09 Aligned_cols=73 Identities=26% Similarity=0.373 Sum_probs=64.4
Q ss_pred CccEEEEecC--CCCC---CHHHHHHHhhcCCCeEEEEEec------------CEEEEEecCHHHHHHHHHHhCCcEecC
Q psy1188 94 KVKVLYVRNL--TQYC---TEEKLKEAFEQYGRVERVKRIK------------DYAFVHFEDRQEAITAMNELNGQTVAG 156 (230)
Q Consensus 94 ~~~~lfV~nL--~~~~---te~~L~~~F~~~G~i~~~~i~r------------g~aFV~F~~~e~A~~Ai~~lng~~i~g 156 (230)
++++|+|.|+ |.++ -+++|++.|++||.|.+|.|++ ||+||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5678999998 3222 3689999999999999999872 699999999999999999999999999
Q ss_pred cEeEEEEeCC
Q psy1188 157 STLEVSLAKP 166 (230)
Q Consensus 157 ~~l~V~~a~~ 166 (230)
|+|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999873
No 202
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.8e-15 Score=106.48 Aligned_cols=65 Identities=23% Similarity=0.450 Sum_probs=59.5
Q ss_pred EecCCCCCCHHHHHHHh------------hcCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeE
Q psy1188 100 VRNLTQYCTEEKLKEAF------------EQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLE 160 (230)
Q Consensus 100 V~nL~~~~te~~L~~~F------------~~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~ 160 (230)
+.||+.++++++|+++| ++||.|.+|.|+ +|||||+|.+.++|.+|++.|||..+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 67888888888888777 999999999998 57999999999999999999999999999999
Q ss_pred EEEe
Q psy1188 161 VSLA 164 (230)
Q Consensus 161 V~~a 164 (230)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=101.15 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHhhcCCCeEEEEEe---cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 104 TQYCTEEKLKEAFEQYGRVERVKRI---KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 104 ~~~~te~~L~~~F~~~G~i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
+.++|+++|+++|++||.|..|.++ +|||||+|.+.++|++|++.+++ +.|++|+|.|++++.
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 3579999999999999999999996 78999999999999999988554 689999999999764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.48 E-value=1.8e-13 Score=97.51 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=63.3
Q ss_pred CccEEEEecC--CCCC--------CHHHHHHHhhcCCCeEEEEEe----cCEEEEEecCHHHHHHHHHHhCCcEecCcEe
Q psy1188 94 KVKVLYVRNL--TQYC--------TEEKLKEAFEQYGRVERVKRI----KDYAFVHFEDRQEAITAMNELNGQTVAGSTL 159 (230)
Q Consensus 94 ~~~~lfV~nL--~~~~--------te~~L~~~F~~~G~i~~~~i~----rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l 159 (230)
+++.|.+.|+ +.+. -++||++.|++||.|.+|.|. +||+||+|.+.++|.+|++.|||..++||+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 5678999998 2221 136889999999999999987 5899999999999999999999999999999
Q ss_pred EEEEeC
Q psy1188 160 EVSLAK 165 (230)
Q Consensus 160 ~V~~a~ 165 (230)
+|.|+.
T Consensus 86 ~v~~~~ 91 (114)
T 3s6e_A 86 TAAYVP 91 (114)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999997
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.3e-13 Score=97.39 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=70.1
Q ss_pred CCCccEEEEecCCCC-CCHHHHHHHhhcCCCeEEEEEecC--EEEEEecC-HHHHHHHHHHhC--CcEecCcEeEEEEeC
Q psy1188 92 MSKVKVLYVRNLTQY-CTEEKLKEAFEQYGRVERVKRIKD--YAFVHFED-RQEAITAMNELN--GQTVAGSTLEVSLAK 165 (230)
Q Consensus 92 ~~~~~~lfV~nL~~~-~te~~L~~~F~~~G~i~~~~i~rg--~aFV~F~~-~e~A~~Ai~~ln--g~~i~g~~l~V~~a~ 165 (230)
..+...|||+||+.+ +++++|+++|+.||+|.+|.+.+| .|||.|.+ .++|..|+++|| +..|.|..++++...
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 346788999999999 999999999999999999999976 99999999 899999999995 669999999998887
Q ss_pred CCCch
Q psy1188 166 PPSDK 170 (230)
Q Consensus 166 ~~~~~ 170 (230)
...++
T Consensus 95 GeeE~ 99 (121)
T 1owx_A 95 GEVEK 99 (121)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 44333
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.1e-13 Score=91.85 Aligned_cols=73 Identities=21% Similarity=0.414 Sum_probs=63.8
Q ss_pred CccEEEEecCC----CCCCH----HHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 94 KVKVLYVRNLT----QYCTE----EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 94 ~~~~lfV~nL~----~~~te----~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
+..||+|.-++ .++-. .+|.+.|++||.|..+++..+.+||+|.+.++|.+||+ |||..+.||.|+|.++.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 45578888776 23333 67899999999999999999999999999999999997 99999999999999998
Q ss_pred CC
Q psy1188 166 PP 167 (230)
Q Consensus 166 ~~ 167 (230)
|.
T Consensus 85 ~d 86 (91)
T 2dnr_A 85 PS 86 (91)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 207
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.44 E-value=4.7e-14 Score=100.89 Aligned_cols=89 Identities=9% Similarity=0.168 Sum_probs=52.7
Q ss_pred cceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
..+|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.+.+... .++|+.|.|.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~-~~~A~~Ai~~l~~~---~~~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFET-QEAAERAIEKMNGM---LLNDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESC-HHHHHHHHHHHTTC---EETTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECC-HHHHHHHHHHcCCC---EECCEEEEEEEC
Confidence 46799999999999999999999999 7999974 55666666555443 899999999999
Q ss_pred CCCCCCCc---cCCCCccEEEEecCCCCCCHHH
Q psy1188 82 DPQEEPDT---ETMSKVKVLYVRNLTQYCTEEK 111 (230)
Q Consensus 82 ~~~~~~~~---~~~~~~~~lfV~nL~~~~te~~ 111 (230)
.+...... .......+|||+|||+++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 87654321 1223446799999999999864
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.5e-11 Score=83.17 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=62.5
Q ss_pred CccEEEEecCCCC-----C-CH---HHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEe
Q psy1188 94 KVKVLYVRNLTQY-----C-TE---EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164 (230)
Q Consensus 94 ~~~~lfV~nL~~~-----~-te---~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a 164 (230)
+..||+|.-++.+ + ++ .+|.+.|++||+|..+++..+-+||+|.+.++|.+||+ |||..+.||.|+|.+.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 4568999888643 2 22 56889999999999999999999999999999999997 9999999999999976
Q ss_pred CC
Q psy1188 165 KP 166 (230)
Q Consensus 165 ~~ 166 (230)
.+
T Consensus 93 ~~ 94 (95)
T 1ufw_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 209
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=4.2e-11 Score=83.21 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=62.0
Q ss_pred ceeEeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~ 85 (230)
++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+... .+.|+.|.|.|+.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFED-PRDAEDAVRGLDGK---VICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSS-HHHHHHHHHHHHHS---CSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECC-HHHHHHHHHHHCCC---eECCcEEEEEEccCCC
Confidence 4789999999999999999999987 7899974 55666666655444 7899999999998765
Q ss_pred CCCcc-----CCCCccEEEEecCC
Q psy1188 86 EPDTE-----TMSKVKVLYVRNLT 104 (230)
Q Consensus 86 ~~~~~-----~~~~~~~lfV~nL~ 104 (230)
..... ......+||||||+
T Consensus 77 ~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CcccCCCCCccccCCCceecCCCC
Confidence 43211 11225689999996
No 210
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.04 E-value=2.2e-11 Score=86.68 Aligned_cols=86 Identities=15% Similarity=0.061 Sum_probs=70.2
Q ss_pred cceeEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
.++|||+|||+++++++|+++|+.|| +||+|.+ ...|.+|...+... .+.|+.|.|.|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED-IFDAKNAVDHLSGF---NVSNRYLVVLYYN 83 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESS-HHHHHHHHHHHTTC---BSSSCBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECC-HHHHHHHHHHcCCC---EECCeEEEEEEec
Confidence 46789999999999999999999998 8999974 55666666655333 7899999999997
Q ss_pred CCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcCCC
Q psy1188 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGR 121 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~ 121 (230)
+.... .+++...++++|.++|++||-
T Consensus 84 ~~~~~-------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF-------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT-------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh-------------hhhhHhHhHHHHHHHHHHhCC
Confidence 54322 578888999999999999984
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.97 E-value=1.1e-09 Score=86.92 Aligned_cols=59 Identities=27% Similarity=0.332 Sum_probs=55.0
Q ss_pred CCHHHHHHHhhcCCCeEEEEEe------------cCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 107 CTEEKLKEAFEQYGRVERVKRI------------KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 107 ~te~~L~~~F~~~G~i~~~~i~------------rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
-.+++|++.|++||.|.++.|. +|++||+|.+.++|.+|++.|||..++||+|.|.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568999999999999999986 4699999999999999999999999999999999987
No 212
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.97 E-value=2.9e-10 Score=78.86 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=50.6
Q ss_pred ceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
++|||+|||+++|+++|+++|++|| +||+|.+ .+.|.+|.+.+... .+.|+.|+|+|
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~-~~~A~~Ai~~lng~---~~~gr~l~V~~ 95 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT-AKDAERAINTLNGL---RLQSKTIKVSY 95 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECC-HHHHHHHHHHhCCC---EECCEEEEEEE
Confidence 6799999999999999999999998 7899974 55666666655333 89999999999
Q ss_pred CCC
Q psy1188 81 ADP 83 (230)
Q Consensus 81 a~~ 83 (230)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 213
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2.5e-10 Score=79.81 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=55.2
Q ss_pred ccceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
...+|||+|||++++|++|+++|++|| +||+|+. .+.|.+|.+.+... +..+.|++|+|.|+.++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~-~~~A~~Ai~~l~~~-~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNT-EEAANTMVNYYTSV-TPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHTTS-CCEETTEECCBCCCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECC-HHHHHHHHHHhccC-CceECCEEEEEEEcCCC
Confidence 346789999999999999999999999 8999974 56666666654332 35899999999999876
Q ss_pred CCCC
Q psy1188 85 EEPD 88 (230)
Q Consensus 85 ~~~~ 88 (230)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 5543
No 214
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.95 E-value=6.8e-10 Score=76.37 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=53.8
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCC-CeeeeeCce
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTG-KHLLSRGCD 75 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 75 (230)
...+|||+|||+++|+++|+++|++|| +||+|.+ .+.|.+|.+.+.+. ..+.++|++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~-~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSS-AMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSS-SHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECC-HHHHHHHHHHhcCCCCCceECCEE
Confidence 567899999999999999999999998 7999974 55666666665543 346799999
Q ss_pred eeeecCCC
Q psy1188 76 IIVDWADP 83 (230)
Q Consensus 76 i~v~~a~~ 83 (230)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999965
No 215
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=6.5e-10 Score=77.44 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=53.2
Q ss_pred cceeEeecCcc-ccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 19 VRKFTMAESSR-EAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 19 ~~~~~v~~l~~-~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
.++|||+|||+ ++++++|+++|++|| +||+|+. .+.|.+|.+.+... ...+.|++|.|.|+...
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~-~~~A~~Ai~~l~~~-~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMAT-TEDAQAAVDYYTTT-PALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESS-HHHHHHHHHHHHHS-CCEETTEECEEEEECCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECC-HHHHHHHHHHHcCC-CceECCcEEEEEECCCC
Confidence 45689999999 999999999999999 8999975 55666666654432 45799999999999865
Q ss_pred CC
Q psy1188 85 EE 86 (230)
Q Consensus 85 ~~ 86 (230)
..
T Consensus 93 ~~ 94 (102)
T 1x4d_A 93 KR 94 (102)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 216
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.2e-09 Score=75.90 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=53.0
Q ss_pred ceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCC
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEE 86 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~ 86 (230)
++|||+|||+++++++|+++|++|| +||+|+. .+.|.+|.+.+.. +...+.|++|.|.|+.++..
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~-~~~A~~Ai~~l~~-~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELAT-EEAAITMVNYYSA-VTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHHH-SCCEETTEECEEEECSCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECC-HHHHHHHHHHhcc-CCceECCcEEEEEEcCcccC
Confidence 5689999999999999999999999 8999975 5556655555432 24589999999999987654
Q ss_pred C
Q psy1188 87 P 87 (230)
Q Consensus 87 ~ 87 (230)
.
T Consensus 94 ~ 94 (101)
T 2cq1_A 94 K 94 (101)
T ss_dssp C
T ss_pred c
Confidence 4
No 217
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.91 E-value=7.4e-10 Score=76.66 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=53.0
Q ss_pred ceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~ 85 (230)
+.|||+|||.++++++|+++|++|| +||+|+. .+.|.+|.+.+... .+.+.|++|.|.|++++.
T Consensus 22 ~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~-~~~A~~Av~~ln~~-~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 22 PVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFED-VLGACNAVNYAADN-QIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHHHS-CEEETTEEEEEEECSCSC
T ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECC-HHHHHHHHHHhcCC-CceeCCcEEEEEeccccc
Confidence 4579999999999999999999999 9999974 56666666665543 667899999999997654
No 218
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.89 E-value=6.2e-10 Score=75.89 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=53.3
Q ss_pred ceeEeecCccccccccccccccCCc--------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT--------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
+.|||+|||+++||++|+++|++|| +||+|.+ .+.|.+|.+.+.+ .+.+.|++|.|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~-~~~A~~Ai~~~~~--~~~~~gr~i~V~ 78 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH-LQDATRWMEANQH--SLNILGQKVSMH 78 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSS-HHHHHHHHHTTTT--EEEETTEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecC-HHHHHHHHHhcCC--CeEECCEEEEEE
Confidence 4689999999999999999999987 8999975 5566666554322 568999999999
Q ss_pred cCCCCCCCC
Q psy1188 80 WADPQEEPD 88 (230)
Q Consensus 80 ~a~~~~~~~ 88 (230)
|+.++....
T Consensus 79 ~a~~~~~~~ 87 (91)
T 2lxi_A 79 YSDPKPKIN 87 (91)
T ss_dssp CCCSCCCCS
T ss_pred EcCCCCCCC
Confidence 998876543
No 219
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=1.2e-09 Score=76.40 Aligned_cols=66 Identities=9% Similarity=0.057 Sum_probs=53.2
Q ss_pred ceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCC
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEE 86 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~ 86 (230)
++|||+|||+++++++|+++|++|| +||+|+. .+.|.+|.+.+.. +.+.+.|++|.|.|+.++..
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~-~~~A~~Ai~~l~~-~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN-IDSAKECVTFAAD-VPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp SEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHHH-SCCBSSSSBCEEEECSSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECC-HHHHHHHHHHhcc-CCceECCEEEEEEEccCccc
Confidence 5689999999999999999999999 8999974 5566666655433 24579999999999987654
Q ss_pred C
Q psy1188 87 P 87 (230)
Q Consensus 87 ~ 87 (230)
.
T Consensus 94 ~ 94 (104)
T 1wex_A 94 T 94 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 220
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=9.2e-10 Score=78.75 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=53.6
Q ss_pred cceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~ 85 (230)
.++|||+|||++++|++|+++|++|| +||+|+. .+.|.+|.+.+.. .+..+.|++|+|.|+.++.
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~-~e~A~~Ai~~l~~-~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNT-EEAANTMVNYYTS-VTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSC-HHHHHHHHHHHHH-HCCCBTTBCCEEEECSSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECC-HHHHHHHHHHhcc-CCceECCeEEEEEEccCCC
Confidence 35689999999999999999999999 8999975 5566666655432 1357899999999998765
Q ss_pred CC
Q psy1188 86 EP 87 (230)
Q Consensus 86 ~~ 87 (230)
..
T Consensus 109 ~~ 110 (119)
T 2ad9_A 109 LK 110 (119)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 221
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=1.3e-09 Score=77.17 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=52.9
Q ss_pred cceeEeecCccc-cccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 19 VRKFTMAESSRE-AEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 19 ~~~~~v~~l~~~-~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
.++|||+|||++ +++++|+++|++|| +||+|+. .+.|.+|.+.+... ...+.|+.|+|.|+...
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~-~~~A~~Ai~~l~~~-~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMET-REDAMAMVDHCLKK-ALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSS-HHHHHHHHHHHHHS-CCCSSSSCCEEEEECSC
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECC-HHHHHHHHHHhccC-CceECCEEEEEEECccc
Confidence 456899999998 99999999999999 8999974 55666666654332 45789999999999765
Q ss_pred CC
Q psy1188 85 EE 86 (230)
Q Consensus 85 ~~ 86 (230)
..
T Consensus 103 ~~ 104 (112)
T 1x4f_A 103 KK 104 (112)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 222
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=8e-09 Score=69.96 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=54.2
Q ss_pred ccceeEeecCccccccccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEE 86 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~ 86 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+... .+.++.|.|.|+.+...
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIED-KTAAEDAIRNLHHY---KLHGVNINVEASKNKSK 82 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESS-HHHHHHHHHHHTTC---BCSSCBCEEECSSCCCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECC-HHHHHHHHHHhcCC---ccCCcEEEEEECCCCCC
Confidence 457899999999999999999999998 8899974 55666666555443 78999999999987665
Q ss_pred C
Q psy1188 87 P 87 (230)
Q Consensus 87 ~ 87 (230)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 223
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=7e-09 Score=70.66 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=54.0
Q ss_pred ccceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+.. ...+.|+.|.|.|+.+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~-~~~A~~A~~~l~g--~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPD-QNWAIRAIETLSG--KVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSC-HHHHHHHHHHHTT--TCEETTEECEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECC-HHHHHHHHHHccC--CeeECCEEEEEEEccCc
Confidence 457899999999999999999999998 7899974 5566666665444 14899999999999876
Q ss_pred CCC
Q psy1188 85 EEP 87 (230)
Q Consensus 85 ~~~ 87 (230)
...
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 224
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=1.1e-08 Score=69.63 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=53.6
Q ss_pred ccceeEeecCccccccccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEE 86 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~ 86 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+.. ..+.++.|.|.|+.+...
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~-~~~a~~A~~~l~g---~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER-AEDAVEAIRGLDN---TEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESC-HHHHHHHHHHHTT---EEETTEEEEEEESSCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECC-HHHHHHHHHHhCC---CeeCCcEEEEEEccCCCC
Confidence 457889999999999999999999998 8999974 5566666655433 488999999999987654
Q ss_pred C
Q psy1188 87 P 87 (230)
Q Consensus 87 ~ 87 (230)
.
T Consensus 85 ~ 85 (92)
T 2dgt_A 85 T 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 225
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.5e-08 Score=70.32 Aligned_cols=67 Identities=7% Similarity=0.101 Sum_probs=54.4
Q ss_pred ccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|...+... .+.++.|.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~v~~ 89 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFEN-SADADRAREKLHGT---VVEGRKIEVNN 89 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESC-HHHHHHHHHHHTTC---EETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECC-HHHHHHHHHHhCCC---EECCEEEEEEE
Confidence 457899999999999999999999998 7889974 55666666655443 79999999999
Q ss_pred CCCCCCCC
Q psy1188 81 ADPQEEPD 88 (230)
Q Consensus 81 a~~~~~~~ 88 (230)
+.+.....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 98776543
No 226
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.1e-08 Score=71.77 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=54.0
Q ss_pred ccceeEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+... .+.++.|.|.|+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~V~~a 96 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFED-PRDAEDAVYGRDGY---DYDGYRLRVEFP 96 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESC-HHHHHHHHHHHTTC---EETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECC-HHHHHHHHHHcCCC---EECCeEEEEEEc
Confidence 457899999999999999999999998 7899974 55666666555443 889999999999
Q ss_pred CCCCCC
Q psy1188 82 DPQEEP 87 (230)
Q Consensus 82 ~~~~~~ 87 (230)
.+....
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 227
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.8e-08 Score=69.94 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=54.0
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
...++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|...+.. ..+.++.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~g---~~~~g~~l~ 88 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR-REDAARAIAGVSG---FGYDHLILN 88 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESS-HHHHHHHHHHTTT---CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECC-HHHHHHHHHHcCC---CeeCCcEEE
Confidence 3457789999999999999999999998 7899974 5566666665433 379999999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|.|+.+....
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999876543
No 228
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.71 E-value=1.2e-08 Score=67.87 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=51.1
Q ss_pred ceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
.+|||+|||.++++++|+++|++|| +||+|.+ .+.|.+|...+... .++|+.|.|.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~g~---~~~g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS-QDDAQNAMDSMQGQ---DLNGRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESC-HHHHHHHHHHHTTC---EETTEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECC-HHHHHHHHHHhcCC---eeCCcEEEEEe
Confidence 4789999999999999999999998 7899974 55666666655433 78999999999
Q ss_pred CCCCC
Q psy1188 81 ADPQE 85 (230)
Q Consensus 81 a~~~~ 85 (230)
+.++.
T Consensus 78 a~~~~ 82 (83)
T 3md1_A 78 AAKLE 82 (83)
T ss_dssp CCCCC
T ss_pred cCcCC
Confidence 98754
No 229
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.71 E-value=8.9e-09 Score=71.57 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=53.8
Q ss_pred ccceeEeecCccccccccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEE 86 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~ 86 (230)
+.++|||+|||+++++++|+++|.+|| +||+|.+ .+.|.+|.+.+.. ..+.++.|.|.|+.+...
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~-~~~a~~A~~~l~g---~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDE-RDGAVKAMEEMNG---KDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESS-HHHHHHHHHHHTT---EEETTEEEEEEECCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCC-HHHHHHHHHHHCC---CccCCCEEEEEEcCCCcc
Confidence 457899999999999999999999998 8999974 5566666665433 389999999999987655
Q ss_pred C
Q psy1188 87 P 87 (230)
Q Consensus 87 ~ 87 (230)
.
T Consensus 86 ~ 86 (103)
T 2dgu_A 86 K 86 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 230
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=1.7e-08 Score=70.10 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=54.7
Q ss_pred eccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
...++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|...+... .+.++.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~V~ 88 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSS-PEEATKAVTEMNGR---IVATKPLYVA 88 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESS-HHHHHHHHHHHTTC---BSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECC-HHHHHHHHHHhCCC---EeCCcEEEEE
Confidence 3567899999999999999999999998 7889974 55666666655444 7899999999
Q ss_pred cCCCCCCC
Q psy1188 80 WADPQEEP 87 (230)
Q Consensus 80 ~a~~~~~~ 87 (230)
|+.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99877654
No 231
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=9.9e-09 Score=69.48 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=53.4
Q ss_pred ccceeEeecCccccccccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEE 86 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~ 86 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+... .+.++.|.|.|+.+...
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEK-EADAKAAIAQLNGK---EVKGKRINVELSTKGQK 83 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESC-HHHHHHHHHHHTTC---EETTEECEEEESCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECC-HHHHHHHHHHhCCC---EECCcEEEEEECCCCCC
Confidence 457899999999999999999999998 8999974 55666666655443 89999999999987654
No 232
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.70 E-value=1.5e-08 Score=71.86 Aligned_cols=66 Identities=6% Similarity=-0.049 Sum_probs=54.3
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|..|| +||+|.. .+.|.+|.+.+... .+.++.|+|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~V 99 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN-PVSAQAAIQSMNGF---QIGMKRLKV 99 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSS-HHHHHHHHHHHTTC---EETTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECC-HHHHHHHHHHcCCC---EECCEEEEE
Confidence 457899999999999999999999998 7899974 55666666655443 899999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999877654
No 233
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.69 E-value=8.4e-09 Score=69.23 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=50.2
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
+.++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+.+. .+.|+.|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~v 80 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN-KWDAENAIQQMGGQ---WLGGRQIRT 80 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHHHTTC---EETTEECEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHcCCC---EECCeEEEE
Confidence 456789999999999999999999998 7899974 55666666655443 899999999
Q ss_pred ecCCCC
Q psy1188 79 DWADPQ 84 (230)
Q Consensus 79 ~~a~~~ 84 (230)
.|+.++
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 998764
No 234
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=2.7e-08 Score=68.79 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=53.6
Q ss_pred ccceeEeecCccccccccccccccCCc---------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|...+. ...+.++.|.|.|+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~---g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFAS-FEDAKEALNSCN---KREIEGRAIRLELQG 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSS-HHHHHHHHHHTS---SEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECC-HHHHHHHHHHhC---CCEeCCeEEEEEEcC
Confidence 467899999999999999999999987 8999974 555666655443 358999999999998
Q ss_pred CCCCC
Q psy1188 83 PQEEP 87 (230)
Q Consensus 83 ~~~~~ 87 (230)
+....
T Consensus 90 ~~~~~ 94 (101)
T 2fc9_A 90 PRGSP 94 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77544
No 235
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.68 E-value=1.2e-08 Score=70.29 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=54.1
Q ss_pred eccceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
.+.++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+... .+.|+.|.|.|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~-~~~a~~a~~~l~g~---~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLET-RTLAEIAKVELDNM---PLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSS-SHHHHHHHHHHTTC---CBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECC-HHHHHHHHHHhCCC---EeCCceEEEEEcCC
Confidence 4567899999999999999999999998 8999974 55666666555443 78999999999987
Q ss_pred CCC
Q psy1188 84 QEE 86 (230)
Q Consensus 84 ~~~ 86 (230)
...
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 236
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.8e-08 Score=68.72 Aligned_cols=66 Identities=6% Similarity=0.003 Sum_probs=53.8
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+.. ..+.|+.|+|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g---~~~~g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD-SECARRALEQLNG---FELAGRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESC-HHHHHHHHHHHTT---CCSSSSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECC-HHHHHHHHHHhCC---CeeCCcEEEE
Confidence 457899999999999999999999997 8899974 5566666665444 3889999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.++...
T Consensus 80 ~~a~~~~~~ 88 (95)
T 2dnz_A 80 GHVTERLDG 88 (95)
T ss_dssp EESSCCCCC
T ss_pred EEcccccCC
Confidence 999876554
No 237
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.68 E-value=6.6e-09 Score=69.77 Aligned_cols=59 Identities=8% Similarity=0.042 Sum_probs=49.7
Q ss_pred cceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
..-|+|+||++.+||++|+++|.+|| +||+|.+ .+.|++|.+.+.+ ..+.|++|+|++|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~-~~eA~~Ai~~Ln~---~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTT-REEANKAQMALNN---CVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHTT---EEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECC-HHHHHHHHHHhcC---CEECCcEEEEEEC
Confidence 34579999999999999999999999 8999974 6566666666554 4999999999987
No 238
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=2.8e-08 Score=68.45 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=53.1
Q ss_pred ccceeEeecCccccccccccccccCC--c-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDY--T-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~--g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
..++|||+|||+++++++|+++|.+| | +||+|.+ ...|.+|...+. ...+.++.|.|.|+.+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~-~~~A~~A~~~l~---g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSN-REDAVEAMKALN---GKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESS-HHHHHHHHHHHS---SEEETTEEEEEECCCCC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCC-HHHHHHHHHHhC---CCEeCCcEEEEEECCCC
Confidence 45789999999999999999999999 5 8999974 556666665443 34889999999999876
Q ss_pred CC
Q psy1188 85 EE 86 (230)
Q Consensus 85 ~~ 86 (230)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 239
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.67 E-value=1.4e-08 Score=71.58 Aligned_cols=62 Identities=13% Similarity=0.028 Sum_probs=51.3
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
.++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+... .+.|+.|.|.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~-~~~A~~Ai~~lng~---~~~gr~i~V~ 81 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTS-TRGAKETVKNLHLT---SVMGNIIHAQ 81 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECC-HHHHHHHHHHhCCC---EECCeEEEEE
Confidence 56799999999999999999999999 7999974 55666666655443 8999999999
Q ss_pred cCCCC
Q psy1188 80 WADPQ 84 (230)
Q Consensus 80 ~a~~~ 84 (230)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 98643
No 240
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=1.7e-08 Score=70.10 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=53.2
Q ss_pred ccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+. ...+.++.|.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~-~~~a~~A~~~l~---g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYE-HRDAAAALAAMN---GRKILGKEVKVNW 89 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESS-HHHHHHHHHHHT---TEEETTEEEEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECC-HHHHHHHHHHhC---CCCcCCCeEEEEE
Confidence 457899999999999999999999997 7899974 555666655443 3488999999999
Q ss_pred CCCCCCC
Q psy1188 81 ADPQEEP 87 (230)
Q Consensus 81 a~~~~~~ 87 (230)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876543
No 241
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=2.4e-08 Score=68.73 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=53.2
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|...+. ...+.++.|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~---g~~~~g~~l~V 82 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF-PEHAVKAYAEVD---GQVFQGRMLHV 82 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESS-HHHHHHHHHHTT---TEESSSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECC-HHHHHHHHHHhC---CCEECCcEEEE
Confidence 457899999999999999999999998 8899974 555555554433 34889999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999887654
No 242
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=2.3e-08 Score=68.88 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=52.9
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|.+|| +||+|.+ .+.|.+|.+ + ++ ..+.|+.|.|
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~-~-~~--~~~~g~~l~V 83 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQAVN-M-HF--HDIMGKKVEV 83 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESS-HHHHHHHHH-H-CC--CBSSSCBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECC-HHHHHHHHH-h-CC--CEECCeEEEE
Confidence 457899999999999999999999998 8899974 556666665 3 33 4889999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999876554
No 243
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=9.9e-09 Score=71.01 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=50.8
Q ss_pred cceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
.++|||+|||+++++++|+++|++|| +||+|.+ ...|..|...+... .+.|+.|+|.|++++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~-~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDT-HEQAAVCIVALANF---PFQGRNLRTGWGKER 101 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSS-HHHHHHHHHHHTTC---EETTEECCCCBCCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECC-HHHHHHHHHHhCCC---eECCeEEEEEeccCC
Confidence 46799999999999999999999998 8999975 55566665554433 889999999999753
No 244
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=2.3e-08 Score=69.25 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=53.8
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.+.+. ...+.++.|.|
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~---g~~~~g~~l~V 86 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL-AEDAAAAIDNMN---ESELFGRTIRV 86 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSS-HHHHHHHHHHHT---TEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECC-HHHHHHHHHHhC---CCEECCcEEEE
Confidence 457899999999999999999999998 8899974 556666665543 34899999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999877654
No 245
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.66 E-value=1.5e-08 Score=69.62 Aligned_cols=64 Identities=8% Similarity=0.020 Sum_probs=52.3
Q ss_pred cceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeee--CceeeeecCCC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSR--GCDIIVDWADP 83 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~--~~~i~v~~a~~ 83 (230)
.++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+... .+. ++.|.|.|+.+
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYES-LDAAQAACAKMRGF---PLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESS-HHHHHHHHHHHTTC---BCSSSSCBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECC-HHHHHHHHHHHCCC---EeCCCCcEEEEEECCC
Confidence 46789999999999999999999998 8899974 56666666655443 777 99999999987
Q ss_pred CCC
Q psy1188 84 QEE 86 (230)
Q Consensus 84 ~~~ 86 (230)
+..
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 246
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.66 E-value=1.7e-08 Score=69.76 Aligned_cols=77 Identities=10% Similarity=-0.069 Sum_probs=49.4
Q ss_pred eeeecccccEEEEeccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhc
Q psy1188 4 QASIKNQKPIVIFVNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFK 64 (230)
Q Consensus 4 ~~~~~~~~~~~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~ 64 (230)
..+.....+.......++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|. .+
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~Ai-~l- 80 (100)
T 2j76_E 4 SHHHHHHRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSAL-SL- 80 (100)
T ss_dssp ----------------CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECC-HHHHHHHH-HT-
T ss_pred ccCCCCCCCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECC-HHHHHHHH-hc-
Confidence 33444455556667789999999999999999999999985 7888874 55555555 33
Q ss_pred CCCeeeeeCceeeeecCCCCC
Q psy1188 65 TGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 65 ~~~~~~~~~~~i~v~~a~~~~ 85 (230)
++ ..+.|+.|.|.++.+..
T Consensus 81 ~g--~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 81 NE--ESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp TT--CCBTTBCCCCEECCCSC
T ss_pred CC--CEECCeEEEEEeccCCC
Confidence 33 37899999999997654
No 247
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.66 E-value=2.6e-08 Score=70.52 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=53.7
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
+.++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.+.+.. ..+.|+.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g---~~~~g~~l~V 89 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN-KWDAENAIQQMGG---QWLGGRQIRT 89 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHHTTT---CEETTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC-HHHHHHHHHHhCC---CEECCEEEEE
Confidence 457899999999999999999999998 7899974 5566666665443 3899999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876544
No 248
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=2.3e-08 Score=69.02 Aligned_cols=65 Identities=11% Similarity=0.021 Sum_probs=52.7
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+.. ..+.|+.|.|.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g---~~~~g~~l~v~ 91 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYEN-ESQASQAVMKMDG---MTIKENIIKVA 91 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESS-HHHHHHHHHHHTT---EESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECC-HHHHHHHHHHhCC---CEECCEEEEEE
Confidence 457899999999999999999999998 7889974 5566666555433 48999999999
Q ss_pred cCCCCCC
Q psy1188 80 WADPQEE 86 (230)
Q Consensus 80 ~a~~~~~ 86 (230)
|+.+...
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987653
No 249
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=2.3e-08 Score=69.19 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=54.5
Q ss_pred eccceeEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
...++|||+|||+++++++|+++|+.|+ +||+|.. .+.|.+|.+.+... .+.++.|.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNS-EEDAKAAKEAMEDG---EIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSS-HHHHHHHHHHHTTC---EETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECC-HHHHHHHHHHhCCC---eECCeEEEEEE
Confidence 3557899999999999999999999886 8999974 66666666655443 89999999999
Q ss_pred CCCCCCC
Q psy1188 81 ADPQEEP 87 (230)
Q Consensus 81 a~~~~~~ 87 (230)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9876653
No 250
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.8e-07 Score=64.54 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=64.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcC-----CCeEEEEEecC--EEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQY-----GRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~-----G~i~~~~i~rg--~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
.++|-+-|||..+++..++.+.+.+ |.|..+.+..+ =|+|+|.|...|-+|.-+|+|.+|.|++|+|.-..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence 4578899999999999999999999 99999999854 79999999999999999999999999999998444
No 251
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.65 E-value=1.7e-08 Score=67.77 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=52.2
Q ss_pred ccceeEeecCccccccccccccccCCc--------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT--------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|...+.+. .+.|+.|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFEN-PDEAEKALKHMDGG---QIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESS-HHHHHHHHHHHTTC---EETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEec-HHHHHHHHHHcCCC---eECCeEEE
Confidence 357899999999999999999999998 7888874 55666666655443 89999999
Q ss_pred eecCCCCC
Q psy1188 78 VDWADPQE 85 (230)
Q Consensus 78 v~~a~~~~ 85 (230)
|.++.+..
T Consensus 79 v~~a~~~~ 86 (88)
T 4a8x_A 79 ATAVLAPW 86 (88)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99987643
No 252
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.65 E-value=3.7e-08 Score=69.04 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=52.4
Q ss_pred ccceeEeecCccccccccccccccCCc------------ceEEecchHHHHHHhhhhhcCCCeeeeeC-----ceeeeec
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRG-----CDIIVDW 80 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~i~v~~ 80 (230)
...+|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.+.+. ...+.+ +.|.|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~-~~~a~~Ai~~l~---g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVR-KEDMTYAVRKLD---NTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESS-HHHHHHHHHHSS---SEEEECTTSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECC-HHHHHHHHHHHC---cCCccCCcCcceEEEEEe
Confidence 356899999999999999999999997 8889974 555555555443 348888 9999999
Q ss_pred CCCCCCC
Q psy1188 81 ADPQEEP 87 (230)
Q Consensus 81 a~~~~~~ 87 (230)
+.+....
T Consensus 90 a~~~~~~ 96 (108)
T 1x4c_A 90 DGPRSPS 96 (108)
T ss_dssp SSCCSCC
T ss_pred CCCCCCC
Confidence 9876543
No 253
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=2e-08 Score=70.54 Aligned_cols=66 Identities=5% Similarity=0.036 Sum_probs=54.0
Q ss_pred ccceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. ...|.+|...+... .+.|+.|.|.|+.+.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFST-HESAAHAIVSVNGT---TIEGHVVKCYWGKES 99 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECC-HHHHHHHHHHcCCC---EECCcEEEEEecCCC
Confidence 356899999999999999999999998 8899974 55666666655333 899999999999876
Q ss_pred CCC
Q psy1188 85 EEP 87 (230)
Q Consensus 85 ~~~ 87 (230)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 254
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.64 E-value=1.8e-08 Score=67.23 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=50.0
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|..|.+.+... .+.|+.|+|
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~v 81 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL-AEDAAAAIDNMNES---ELFGRTIRV 81 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESS-HHHHHHHHHHHTTC---EETTEECEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECC-HHHHHHHHHHhCCC---EECCcEEEE
Confidence 456789999999999999999999998 7899974 55666666555433 889999999
Q ss_pred ecCC
Q psy1188 79 DWAD 82 (230)
Q Consensus 79 ~~a~ 82 (230)
.|++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9974
No 255
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=1.7e-08 Score=70.08 Aligned_cols=66 Identities=9% Similarity=0.087 Sum_probs=53.4
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+... .+.|+.|.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~V 87 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHD-RRDAQDAEAAMDGA---ELDGRELRV 87 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESS-SSHHHHHHHHHSSC---CBTTBCCEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECC-HHHHHHHHHHcCCC---EECCcEEEE
Confidence 457899999999999999999999998 7899974 55566666654443 799999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876543
No 256
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=1.8e-08 Score=70.13 Aligned_cols=67 Identities=13% Similarity=-0.007 Sum_probs=54.1
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
...++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+.. ..+.++.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g---~~~~g~~l~ 88 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS-EEDADYAIKIMDM---IKLYGKPIR 88 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESS-HHHHHHHHHHSSS---CBCSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECC-HHHHHHHHHHhCC---CeECCeEEE
Confidence 3567899999999999999999999997 8899974 5566666665443 379999999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|.|+.+....
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999876543
No 257
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.63 E-value=2.6e-08 Score=68.00 Aligned_cols=62 Identities=3% Similarity=-0.090 Sum_probs=49.7
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
...+|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+... .+.++.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~l~g~---~~~gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES-RDEATAAVIDLNDR---PIGSRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESS-HHHHHHHHHHHTTC---EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECC-HHHHHHHHHHhCCC---eECCcEEEE
Confidence 357899999999999999999999998 8999974 55666666554433 899999999
Q ss_pred ecCCC
Q psy1188 79 DWADP 83 (230)
Q Consensus 79 ~~a~~ 83 (230)
.++.+
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98753
No 258
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=1.5e-08 Score=71.08 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=55.2
Q ss_pred cceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
.++|||+|||+++++++|+++|.+|| +||+|. +.+.|..|.+.+.++ ...+.|+.|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~-~~~~A~~A~~~l~~g-~~~~~g~~l~ 85 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYE-SHRAAAMARRKLMPG-RIQLWGHQIA 85 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEES-SHHHHHHHHTTTTTC-CSCBTTBCCE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEec-CHHHHHHHHHHhhCC-CceecCCeEE
Confidence 46789999999999999999999885 688886 455666666665433 3589999999
Q ss_pred eecCCCCCCCCcc
Q psy1188 78 VDWADPQEEPDTE 90 (230)
Q Consensus 78 v~~a~~~~~~~~~ 90 (230)
|.|+.+....+..
T Consensus 86 V~~a~~~~~~~~~ 98 (109)
T 2dis_A 86 VDWAEPEIDVDED 98 (109)
T ss_dssp EEESCSSCSTTTC
T ss_pred EEEcCCCCCcCHH
Confidence 9999887665443
No 259
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.4e-08 Score=69.83 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=52.4
Q ss_pred ccceeEeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. ...|.+|.+.+... .+.|+.|.|.|+.+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPD-SAAAQQAVSCLQGL---RLGTDTLRVALARQ 93 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSS-HHHHHHHHHHHTTC---CSSSSCCEEEECCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECC-HHHHHHHHHHhCCC---EECCcEEEEEEcCC
Confidence 356899999999999999999999997 8899974 55666666555443 88999999999977
Q ss_pred CC
Q psy1188 84 QE 85 (230)
Q Consensus 84 ~~ 85 (230)
..
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 260
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.62 E-value=3.5e-08 Score=69.54 Aligned_cols=67 Identities=9% Similarity=0.008 Sum_probs=53.4
Q ss_pred EeccceeEeecCcccccccccc---ccccCCc----------------------ceEEecchHHHHHHhhhhhcCCCeee
Q psy1188 16 FVNVRKFTMAESSREAEEKPSS---ERTPDYT----------------------KLLEYGLDKRIAGKLDDIFKTGKHLL 70 (230)
Q Consensus 16 ~~n~~~~~v~~l~~~~~e~~l~---~~f~~~g----------------------~fv~~~~~~~~a~~~~~~~~~~~~~~ 70 (230)
....++|||+|||+++++++|. ++|.+|| +||+|.. .+.|.+|.+.+.. ..
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~-~~~A~~Ai~~lng---~~ 87 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIR-SEDALRAIQCVNN---VV 87 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESS-HHHHHHHHHHHTT---EE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECc-HHHHHHHHHHhCC---CE
Confidence 3456789999999999999999 9999997 7888874 5556666555433 38
Q ss_pred eeCceeeeecCCCCCC
Q psy1188 71 SRGCDIIVDWADPQEE 86 (230)
Q Consensus 71 ~~~~~i~v~~a~~~~~ 86 (230)
++|+.|+|.|+.++..
T Consensus 88 ~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 88 VDGRTLKASLGTTKYC 103 (111)
T ss_dssp ETTEEEEEESCCCCSC
T ss_pred ECCEEEEEEecccccc
Confidence 9999999999987653
No 261
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.62 E-value=2.6e-08 Score=70.89 Aligned_cols=66 Identities=15% Similarity=0.035 Sum_probs=53.5
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
+.++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+.+ ..+.|+.|.|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~-~~~A~~Ai~~l~g---~~~~g~~l~V~ 81 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFEN-PADAKNAAKDMNG---KSLHGKAIKVE 81 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSS-HHHHHHHHHHCSS---CBCSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECC-HHHHHHHHHHhCC---CEECCEEEEEE
Confidence 467899999999999999999999998 7899974 5566666655433 37899999999
Q ss_pred cCCCCCCC
Q psy1188 80 WADPQEEP 87 (230)
Q Consensus 80 ~a~~~~~~ 87 (230)
|+.+....
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876543
No 262
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.62 E-value=1.7e-08 Score=68.43 Aligned_cols=66 Identities=9% Similarity=0.063 Sum_probs=53.5
Q ss_pred ccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
..++|||+|||+++++++|+++|.+|| +||+|.+ .+.|.+|.+.+... .+.++.|.|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~-~~~a~~a~~~l~g~---~~~g~~l~v~~ 82 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFES-PEVAERACRMMNGM---KLSGREIDVRI 82 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESS-HHHHHHHHHHHTTC---CBTTBCCCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECC-HHHHHHHHHHhCCC---EECCcEEEEEE
Confidence 356789999999999999999999998 7889974 55666666655444 78999999999
Q ss_pred CCCCCCC
Q psy1188 81 ADPQEEP 87 (230)
Q Consensus 81 a~~~~~~ 87 (230)
+.+...+
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9876543
No 263
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.62 E-value=2.2e-08 Score=68.58 Aligned_cols=63 Identities=5% Similarity=-0.015 Sum_probs=52.0
Q ss_pred ceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
++|||+|||.++++++|+++|++|| +||+|.+ .+.|.+|.+.+.+. .+.|+.|.|.|
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~g~---~~~g~~l~V~~ 78 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRD-LESSASAVRNLNGY---QLGSRFLKCGY 78 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEEE
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECC-HHHHHHHHHHhCCC---eECCeEEEEEE
Confidence 5789999999999999999999998 8899974 55666666555443 89999999999
Q ss_pred CCCCCC
Q psy1188 81 ADPQEE 86 (230)
Q Consensus 81 a~~~~~ 86 (230)
+.+...
T Consensus 79 a~~~~~ 84 (96)
T 2x1f_A 79 SSNSDI 84 (96)
T ss_dssp CSCSSG
T ss_pred cCCCCC
Confidence 987654
No 264
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.62 E-value=2.4e-08 Score=68.73 Aligned_cols=66 Identities=5% Similarity=0.021 Sum_probs=52.8
Q ss_pred EEeccceeEeecCcc-ccccccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 15 IFVNVRKFTMAESSR-EAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 15 ~~~n~~~~~v~~l~~-~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
.....++|||+|||+ ++++++|+++|++|| +||+|.. .+.|.+|...+.+. .+.|+.|.|.|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~-~~~A~~Ai~~l~g~---~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDN-PQSVRDAIEXESQE---MNFGKKLILEVSS 93 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESS-HHHHHHHHHHHTTS---EETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECC-HHHHHHHHHHcCCC---EECCEEEEEEecC
Confidence 344567889999998 999999999999998 8899974 55666666654443 8899999999987
Q ss_pred CC
Q psy1188 83 PQ 84 (230)
Q Consensus 83 ~~ 84 (230)
+.
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 265
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.62 E-value=3.8e-08 Score=69.12 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=54.3
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcC---CCeeeeeCce
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKT---GKHLLSRGCD 75 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~---~~~~~~~~~~ 75 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|...+.. .....+.|+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMT-QEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESS-HHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECC-HHHHHHHHHHhccccccCCcEEcCEE
Confidence 356789999999999999999999998 8899974 5566666665431 1145899999
Q ss_pred eeeecCCCCCCC
Q psy1188 76 IIVDWADPQEEP 87 (230)
Q Consensus 76 i~v~~a~~~~~~ 87 (230)
|.|.|+.+....
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999876554
No 266
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.62 E-value=2.2e-08 Score=70.30 Aligned_cols=65 Identities=8% Similarity=-0.014 Sum_probs=53.0
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
...++|||+|||+.+++++|+++|++|| +||+|.. .+.|..|.+.+... .+.|+.|.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~-~~~A~~Ai~~l~g~---~i~g~~l~ 99 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD-SECAKKALEQLNGF---ELAGRPMK 99 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESC-HHHHHHHHHHHTTC---CSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC-HHHHHHHHHHcCCC---EECCEEEE
Confidence 3567899999999999999999999998 8899974 55666666655443 89999999
Q ss_pred eecCCCCC
Q psy1188 78 VDWADPQE 85 (230)
Q Consensus 78 v~~a~~~~ 85 (230)
|.++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99997654
No 267
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.62 E-value=2.7e-08 Score=69.92 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=53.5
Q ss_pred eccceeEeecCccccccccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~ 85 (230)
...++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+.+. .+.|+.|.|.|+.+..
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~-~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEE-AESAAKAIEEVHGK---SFANQPLEVVYSKLPA 104 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSS-HHHHHHHHHHHTTC---EETTEECEEESCSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECC-HHHHHHHHHHcCCC---EECCeEEEEEEecCCC
Confidence 4567899999999999999999999998 8999974 55666666655444 7899999999997754
No 268
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=2.3e-08 Score=68.60 Aligned_cols=66 Identities=12% Similarity=0.016 Sum_probs=52.9
Q ss_pred ccceeEeecCcccccccccc----ccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 18 NVRKFTMAESSREAEEKPSS----ERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~----~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
+..+|||+|||+++++++|+ ++|++|| +||+|.. .+.|.+|.+.+. ...+.|+.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~-~~~A~~Ai~~l~---g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMEN-LQDAIGAVNSLH---RYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESS-HHHHHHHHHHHT---TEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECC-HHHHHHHHHHhC---CCEECCeEEE
Confidence 45689999999999999999 9999988 7899974 555665655543 3489999999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|.|+.+...+
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999776543
No 269
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=3.5e-08 Score=67.31 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=52.1
Q ss_pred ccceeEeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.. + ++ ..+.|+.|.|.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~-~~~a~~ai~-l-~g--~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGD-VGAREAVLS-Q-SQ--HSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESS-HHHHHHHHT-C-SC--CEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECC-HHHHHHHHh-c-CC--eEECCEEEEEEECCc
Confidence 346899999999999999999999997 7889974 556666665 3 33 489999999999876
Q ss_pred CCCC
Q psy1188 84 QEEP 87 (230)
Q Consensus 84 ~~~~ 87 (230)
....
T Consensus 82 ~~~~ 85 (94)
T 2e5g_A 82 KEFQ 85 (94)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5543
No 270
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=5.2e-08 Score=65.55 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=51.6
Q ss_pred ccceeEeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.++ .+..+.+.++.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~-~~~a~~~-----~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFAD-DQIAQSL-----CGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSC-HHHHHHT-----TTCEEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECC-HHHHHHH-----hcCCceeCCEEEEEEecCC
Confidence 357899999999999999999999998 8999975 4455443 3336788999999999987
Q ss_pred CCCC
Q psy1188 84 QEEP 87 (230)
Q Consensus 84 ~~~~ 87 (230)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6554
No 271
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=1.8e-08 Score=67.25 Aligned_cols=62 Identities=10% Similarity=0.208 Sum_probs=50.9
Q ss_pred ccceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+.++ ..+.|+.|.|.|++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~-~~~A~~a~~~l~~~--~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFAT-RQAAEVAAEKSFNK--LIVNGRRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESS-HHHHHHHHHTTTTT--CEETTEECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECC-HHHHHHHHHHhcCC--eeECCCEEEEEecC
Confidence 457889999999999999999999998 8999974 66666666655344 38899999999974
No 272
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.61 E-value=3.4e-08 Score=67.84 Aligned_cols=63 Identities=3% Similarity=-0.101 Sum_probs=50.9
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
...+|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.+.+... .+.++.|+|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~l~g~---~~~g~~l~V 89 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES-RDEATAAVIDLNDR---PIGSRKVKL 89 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESC-HHHHHHHHHHTTTC---EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECC-HHHHHHHHHHhCCC---eeCCeEEEE
Confidence 356789999999999999999999998 8999975 55566666554333 899999999
Q ss_pred ecCCCC
Q psy1188 79 DWADPQ 84 (230)
Q Consensus 79 ~~a~~~ 84 (230)
.++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998643
No 273
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=2.3e-08 Score=68.11 Aligned_cols=61 Identities=10% Similarity=-0.057 Sum_probs=49.9
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+. ...+.++.|.|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~---g~~~~g~~l~v 90 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD-KDSAQNCTRAIN---NKQLFGRVIKA 90 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESC-HHHHHHHHHHTT---TEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC-HHHHHHHHHHcC---CCeeCCcEEEE
Confidence 457899999999999999999999998 7899974 556666665543 34899999999
Q ss_pred ecCC
Q psy1188 79 DWAD 82 (230)
Q Consensus 79 ~~a~ 82 (230)
.|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 274
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=2.4e-08 Score=70.17 Aligned_cols=63 Identities=8% Similarity=0.116 Sum_probs=51.9
Q ss_pred ccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
..++|||+|||.++++++|+++|++|| +||+|.. .+.|.+|...+.+. .+.|+.|.|.|
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~-~~~A~~Ai~~l~g~---~~~g~~l~V~~ 103 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFEN-SADADRAREKLHGT---VVEGRKIEVNN 103 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCC-SHHHHHHHHHHTTC---EETTEECEEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECC-HHHHHHHHHHcCCC---EECCEEEEEEE
Confidence 567899999999999999999999998 7899975 55566666654443 79999999999
Q ss_pred CCCC
Q psy1188 81 ADPQ 84 (230)
Q Consensus 81 a~~~ 84 (230)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 275
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.60 E-value=6e-08 Score=67.26 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=52.6
Q ss_pred eccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
...++|||+|||+++++++|+++|++|+ +||+|.. .+.|.+|. .+ ++ ..+.++.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~-~l-~g--~~~~g~~l~V 87 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEAL-TY-DG--ALLGDRSLRV 87 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESS-HHHHHHHG-GG-TT--CEETTEECEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECC-HHHHHHHH-hh-CC--CeECCeEEEE
Confidence 3467899999999999999999999985 8999975 55555555 33 33 4899999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876543
No 276
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.60 E-value=1.4e-08 Score=71.72 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=51.1
Q ss_pred cceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
.++|||+|||+++++++|+++|++|| +||+|.. ...|..|.+.+... .+.++.|.|.|+...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~-~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLE-PLEARKAFRHLAYS---KFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESC-HHHHHHHHHHHTTC---BSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCC-HHHHHHHHHHhCCC---EECCeEEEEEECCCC
Confidence 45789999999999999999999999 8999974 55666666655443 789999999998653
No 277
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=3.5e-08 Score=67.43 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=52.5
Q ss_pred ccceeEeecCccccccccccccccCCc--------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT--------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+.. ..+.|+.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g---~~~~g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS-FDASDAAIEAMNG---QYLCNRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSS-HHHHHHHHHTTTT---CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECC-HHHHHHHHHHcCC---CEECCEEEE
Confidence 356889999999999999999999987 6888864 5556666655433 378999999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|.|+.+....
T Consensus 80 v~~a~~~~~~ 89 (96)
T 1x5t_A 80 VSYAFKKDSK 89 (96)
T ss_dssp EEESCCCCCC
T ss_pred EEEecccCCC
Confidence 9999876644
No 278
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.60 E-value=3.6e-08 Score=71.41 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=53.4
Q ss_pred eccceeEeecCccccccccccccccCCc---------------ceEEecchHHHHHHhhhhhcCCCeeeeeC--ceeeee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT---------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRG--CDIIVD 79 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~--~~i~v~ 79 (230)
.++-+|||+||++.+|+++|+++|++|| +||+|.. ...|..|.+.+... .+.+ +.|+|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~-~~~A~~Ai~~LnG~---~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD-PVSAQHAKLSLDGQ---NIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESC-HHHHHHHHHHHTTC---EEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECC-HHHHHHHHHHcCCC---eecCCCcEEEEE
Confidence 3445569999999999999999999999 8899974 56666666665444 6776 999999
Q ss_pred cCCCCCCC
Q psy1188 80 WADPQEEP 87 (230)
Q Consensus 80 ~a~~~~~~ 87 (230)
|+++....
T Consensus 102 ~ak~~~l~ 109 (130)
T 3zzy_A 102 FSKLTSLN 109 (130)
T ss_dssp ECSCSSCC
T ss_pred ecCCCcee
Confidence 99887544
No 279
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.59 E-value=4.4e-08 Score=67.23 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=52.6
Q ss_pred ccceeEeecCccccccccccccccCCc----------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCce
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT----------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCD 75 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g----------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 75 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|...+... .+.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKK-PEQAQKALKQLQGH---TVDGHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESS-HHHHHHHHHHSTTC---EETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECC-HHHHHHHHHHhCCC---eeCCeE
Confidence 346799999999999999999999987 6788864 55666666654333 899999
Q ss_pred eeeecCCCCCCC
Q psy1188 76 IIVDWADPQEEP 87 (230)
Q Consensus 76 i~v~~a~~~~~~ 87 (230)
|.|.|+.+....
T Consensus 80 l~V~~a~~~~~~ 91 (98)
T 2cpf_A 80 LEVRISERATKP 91 (98)
T ss_dssp CEEECSSCSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999876554
No 280
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=1.5e-08 Score=70.12 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=53.7
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+... .+.++.|.|
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~v 86 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN-IDDAKDAMMAMNGK---SVDGRQIRV 86 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSS-HHHHHHHHHHHTTC---CTTSCCCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC-HHHHHHHHHHhCCC---EECCeEEEE
Confidence 457899999999999999999999987 8999974 56666666555444 789999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999776543
No 281
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=1.9e-08 Score=70.18 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=51.3
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
.++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+.+. .+.|+.|.|.
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~V~ 98 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYET-YKEAQAAMEGLNGQ---DLMGQPISVD 98 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESC-HHHHHHHHHHHTTC---BSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECC-HHHHHHHHHHhcCC---EECCcEEEEE
Confidence 45689999999999999999999998 8899974 55666666655443 8899999999
Q ss_pred cCCCCC
Q psy1188 80 WADPQE 85 (230)
Q Consensus 80 ~a~~~~ 85 (230)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997654
No 282
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.59 E-value=4.2e-08 Score=68.22 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=53.0
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeC---cee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRG---CDI 76 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~---~~i 76 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+... .+.+ +.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~g~---~~~gg~~~~l 89 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSS-HTEAQAAIHALHGS---QTMPGASSSL 89 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESS-HHHHHHHHHHHSSC---CCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCC-HHHHHHHHHHHcCC---ccCCCCCccE
Confidence 467899999999999999999999998 8899974 55666666655443 6776 999
Q ss_pred eeecCCCCCCC
Q psy1188 77 IVDWADPQEEP 87 (230)
Q Consensus 77 ~v~~a~~~~~~ 87 (230)
.|.|+.+....
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876543
No 283
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.58 E-value=1.2e-08 Score=69.09 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=46.7
Q ss_pred ceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
.+|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+... .++|+.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~-~~~a~~Ai~~l~g~---~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGS-EASSKKLMDLLPKR---ELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-C-HHHHHHHHHHGGGS---CSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECC-HHHHHHHHHHcCCC---eeCCEEEEE
Confidence 3689999999999999999999998 7888864 56666666655444 899999999
Q ss_pred ecCCCCCC
Q psy1188 79 DWADPQEE 86 (230)
Q Consensus 79 ~~a~~~~~ 86 (230)
.++.+...
T Consensus 78 ~~~~~~~~ 85 (90)
T 3p5t_L 78 TPSNKLEH 85 (90)
T ss_dssp CCC-----
T ss_pred EECCCCcc
Confidence 99987654
No 284
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=2e-08 Score=68.91 Aligned_cols=66 Identities=6% Similarity=0.115 Sum_probs=52.9
Q ss_pred ccceeEeecCcc-ccccccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC
Q psy1188 18 NVRKFTMAESSR-EAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 18 n~~~~~v~~l~~-~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~ 85 (230)
..++|||+|||+ ++++++|+++|++|| +||+|.. .+.|..|...+... .+.|+.|.|.|+.+..
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDN-PQSVRDAIECESQE---MNFGKKLILEVSSSNA 84 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESC-HHHHHHHHHHHTCS---SCBTTTBCEEEEECCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECC-HHHHHHHHHHcCCC---eeCCcEEEEEEcCcCC
Confidence 456789999998 999999999999998 8999974 55666666654443 7889999999997665
Q ss_pred CC
Q psy1188 86 EP 87 (230)
Q Consensus 86 ~~ 87 (230)
.+
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 285
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.57 E-value=3.4e-08 Score=69.40 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=51.5
Q ss_pred ceeEeecCccc-cccccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCC
Q psy1188 20 RKFTMAESSRE-AEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEE 86 (230)
Q Consensus 20 ~~~~v~~l~~~-~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~ 86 (230)
++|||+|||++ +++++|+++|++|| +||+|.. .+.|.+|.+.+... .+.|+.|.|.|+.+...
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSN-ERHARAAVLGENGR---VLAGQTLDINMAGEPKP 102 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSS-SHHHHHHHHHHTTC---EETTEECCEEESCCCCS
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECC-HHHHHHHHHHcCCC---EECCeEEEEEECCCCCC
Confidence 68999999999 99999999999998 8999975 55666666554443 88999999999975443
No 286
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.56 E-value=4e-08 Score=67.02 Aligned_cols=62 Identities=10% Similarity=-0.070 Sum_probs=50.6
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+... .+.++.|.|.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~V~ 90 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKH-PESVSYAIALLNGI---RLYGRPINVS 90 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS-THHHHHHHHHHTTC---EETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECC-HHHHHHHHHHhCCC---EECCCEEEEE
Confidence 457899999999999999999999997 7889974 55666666654443 7999999999
Q ss_pred cCCC
Q psy1188 80 WADP 83 (230)
Q Consensus 80 ~a~~ 83 (230)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 287
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.56 E-value=6.5e-08 Score=66.11 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=52.4
Q ss_pred ccceeEeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|...+ +...+.|+.|.|.|+.+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l---~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKS-EADAEKNLEEK---QGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESS-HHHHHHHHHHT---TEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECC-HHHHHHHHHHh---CCCEECCeEEEEEEcCC
Confidence 457899999999999999999999986 8999975 55555555543 34589999999999976
Q ss_pred CCC
Q psy1188 84 QEE 86 (230)
Q Consensus 84 ~~~ 86 (230)
...
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 288
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.56 E-value=4.4e-08 Score=65.89 Aligned_cols=62 Identities=15% Similarity=0.064 Sum_probs=50.2
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
+.++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|. .+ ++ ..+.|+.|.|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~a~-~~-~g--~~~~g~~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD-KESVRTSL-AL-DE--SLFRGRQIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESS-THHHHHHG-GG-TT--CEETTEECEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECC-HHHHHHHH-hc-CC--CEECCcEEEE
Confidence 357899999999999999999999998 8899975 55555555 33 33 3799999999
Q ss_pred ecCCCC
Q psy1188 79 DWADPQ 84 (230)
Q Consensus 79 ~~a~~~ 84 (230)
.++++.
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 999764
No 289
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=4.7e-08 Score=69.34 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=53.8
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
.+.++|||+|||+++++++|+++|.+|| +||+|.. ...|.+|... + ...++|+.|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~--~--~~~~~g~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS-MAEVDAAMAA--R--PHSIDGRVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSS-HHHHHHHHTS--C--SEEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCC-HHHHHHHHHh--C--CcEECCEEEE
Confidence 3457899999999999999999999997 8899974 5556655555 3 4589999999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|.|+.+....
T Consensus 100 V~~a~~~~~~ 109 (116)
T 1x4b_A 100 PKRAVAREES 109 (116)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCccC
Confidence 9999877654
No 290
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.55 E-value=5.4e-08 Score=65.83 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=47.7
Q ss_pred eccceeEeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
....++||+|||+++++++|+++|++|| +||+|.. .+.|.++ ++..+.+.++.+.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~-~~~A~~~-----~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFAD-DKVAQSL-----CGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESC-HHHHHHH-----TTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECC-HHHHHHH-----cCCCcccCCEEEEEEEcC
Confidence 3457789999999999999999999998 8899975 4444432 334677889999999998
Q ss_pred CCC
Q psy1188 83 PQE 85 (230)
Q Consensus 83 ~~~ 85 (230)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 291
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.55 E-value=1.5e-08 Score=68.49 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=47.8
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
.++|||+|||+++++++|+++|++|| +||+|.+ .+ |.+|...+.+. .+.|+.|.|+
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~-a~~a~~~l~g~---~~~g~~l~V~ 75 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ES-VSEAIAKLDNT---DFMGRTIRVT 75 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECT-TH-HHHHHHTSCSS---CCSSSSCSEE
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECC-HH-HHHHHHHhCCC---EECCeEEEEE
Confidence 36899999999999999999999997 8999975 44 55555554333 7899999999
Q ss_pred cCCCCCC
Q psy1188 80 WADPQEE 86 (230)
Q Consensus 80 ~a~~~~~ 86 (230)
++.+...
T Consensus 76 ~a~~~~~ 82 (90)
T 2ki2_A 76 EANPKKS 82 (90)
T ss_dssp EC-----
T ss_pred EcCCCCC
Confidence 9977654
No 292
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.54 E-value=6.5e-08 Score=67.44 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=54.1
Q ss_pred ccceeEeecCccccccccccccccCCc--------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT--------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
..++|||+|||+++++++|+++|.+|| +||+|. +.+.|.+|...+.++ ..+.|+.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~-~~~~a~~A~~~l~~~--~~~~g~~l~ 90 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFI-TKQDAKKAFNALCHS--THLYGRRLV 90 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEES-SHHHHHHHHHHHHTC--CBSSSCBCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEEC-CHHHHHHHHHHhccC--CeECCCEEE
Confidence 457889999999999999999999997 688886 466677777766333 278899999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|.|+.+....
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999876554
No 293
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=4.8e-08 Score=66.56 Aligned_cols=62 Identities=13% Similarity=-0.013 Sum_probs=50.6
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|...+. ...+.++.|.|
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~---g~~~~g~~l~v 89 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN-VDDAKEAKERAN---GMELDGRRIRV 89 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESS-HHHHHHHHHHHT---TEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECC-HHHHHHHHHHhC---CCEECCEEEEE
Confidence 456789999999999999999999998 7899974 556666666543 34899999999
Q ss_pred ecCCC
Q psy1188 79 DWADP 83 (230)
Q Consensus 79 ~~a~~ 83 (230)
.|+++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 294
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=8.5e-08 Score=67.69 Aligned_cols=63 Identities=11% Similarity=-0.075 Sum_probs=51.1
Q ss_pred cceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
.++|||+|||+++++++|+++|.+|| +||+|.+ .+.|.+|...+... .+.++.|.|.|
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~v~~ 90 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ-SIEAVQAISMFNGQ---LLFDRPMHVKM 90 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECC-HHHHHHHHHHhCCC---EeCCCEEEEEE
Confidence 46789999999999999999999998 7888874 55666666655443 88999999999
Q ss_pred CCCCC
Q psy1188 81 ADPQE 85 (230)
Q Consensus 81 a~~~~ 85 (230)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87543
No 295
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=6e-08 Score=68.78 Aligned_cols=65 Identities=9% Similarity=0.034 Sum_probs=52.1
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+ ++ .+.++.|.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~Ai~~~-~~---~~~g~~l~V 90 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD-RAAAERACKDP-NP---IIDGRKANV 90 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESS-HHHHHHHHTCS-SC---EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECC-HHHHHHHHHhC-CC---cCCCEEEEE
Confidence 467899999999999999999999997 7899974 55555555543 23 799999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+...+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999765544
No 296
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.54 E-value=3.7e-08 Score=69.17 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=51.6
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ ...|.+|...+... .+.|+.|.|
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~Ai~~l~g~---~~~g~~l~V 100 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET-HKQALAAKEALNGA---EIMGQTIQV 100 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESS-HHHHHHHHHHHTTC---EETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECC-HHHHHHHHHHcCCC---EECCcEEEE
Confidence 345689999999999999999999998 7899974 55666666654433 889999999
Q ss_pred ecCCCCC
Q psy1188 79 DWADPQE 85 (230)
Q Consensus 79 ~~a~~~~ 85 (230)
.|+.+..
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9997654
No 297
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=3.3e-08 Score=68.80 Aligned_cols=66 Identities=9% Similarity=0.063 Sum_probs=53.7
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
...++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|... + ...+.++.|.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~a~~~--~--~~~~~g~~l~ 88 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLAS--R--PHTLDGRNID 88 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESS-TTHHHHHHHH--C--SEEETTEEEB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECC-HHHHHHHHHh--C--CCeECCEEEE
Confidence 3567899999999999999999999998 7899974 5555555555 3 4589999999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|.|+.+....
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876654
No 298
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.54 E-value=2.3e-08 Score=75.23 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=51.7
Q ss_pred ccceeEeecCccccccccccccccCCc---------------ceEEecchHHHHHHhhhhhcCCCeeeee--Cceeeeec
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------KLLEYGLDKRIAGKLDDIFKTGKHLLSR--GCDIIVDW 80 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~--~~~i~v~~ 80 (230)
++.+|||+||++.+++++|+++|++|| +||+|.+ .+.|.+|.+.+... .+. ++.|+|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d-~~~A~~Ai~~LnG~---~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD-PVSAQHAKLSLDGQ---NIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESC-HHHHHHHHHHSTTB---CSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECC-HHHHHHHHHHhCCC---EecCCCcEEEEEE
Confidence 345679999999999999999999999 8999974 55666666654433 664 49999999
Q ss_pred CCCCCCC
Q psy1188 81 ADPQEEP 87 (230)
Q Consensus 81 a~~~~~~ 87 (230)
+++....
T Consensus 121 Ak~~~l~ 127 (164)
T 1sjr_A 121 SKLTSLN 127 (164)
T ss_dssp CSSSSCC
T ss_pred ecCCccc
Confidence 9887543
No 299
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.54 E-value=5.8e-08 Score=66.46 Aligned_cols=63 Identities=3% Similarity=-0.040 Sum_probs=51.6
Q ss_pred cceeEeecCcccccccccc----ccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 19 VRKFTMAESSREAEEKPSS----ERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~----~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
.++|||+|||+++++++|+ ++|++|| +||+|.+ .+.|..|...+.+. .+.|+.|.|
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~g~~l~v 83 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKE-VSSATNALRSMQGF---PFYDKPMRI 83 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESS-HHHHHHHHHHHTTC---EETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCC-HHHHHHHHHHhCCC---EECCcEEEE
Confidence 4678999999999999999 9999998 8899974 55666666655443 789999999
Q ss_pred ecCCCCC
Q psy1188 79 DWADPQE 85 (230)
Q Consensus 79 ~~a~~~~ 85 (230)
.|+.+..
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998754
No 300
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=9.3e-08 Score=66.40 Aligned_cols=66 Identities=12% Similarity=-0.056 Sum_probs=52.4
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
...++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|. .+ ++ ..+.++.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~A~-~l-~g--~~~~g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSAL-SL-NE--ESLGNKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESS-HHHHHHHH-GG-GT--CEETTEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECC-HHHHHHHH-hc-CC--CEeCCcEEE
Confidence 3457899999999999999999999985 7889974 55555555 43 33 389999999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|.++.+....
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876554
No 301
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.53 E-value=3e-08 Score=68.50 Aligned_cols=64 Identities=9% Similarity=0.075 Sum_probs=51.8
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..++|||+|||+++++++|+++|.+|| +||+|.+ .+.|.+|.+ + ++ ..+.|+.|.|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~-~~~a~~A~~-l-~g--~~~~g~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFES-AEDLEKALE-L-TG--LKVFGNEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESS-HHHHHHHHH-G-GG--CCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECC-HHHHHHHHh-c-CC--cEECCcEEEEE
Confidence 457899999999999999999999987 8999975 555655555 3 33 37889999999
Q ss_pred cCCCCCC
Q psy1188 80 WADPQEE 86 (230)
Q Consensus 80 ~a~~~~~ 86 (230)
|+.+...
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987653
No 302
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=4.3e-08 Score=69.36 Aligned_cols=65 Identities=9% Similarity=0.126 Sum_probs=52.5
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
.++|||+|||+++++++|+++|.+|| +||+|.+ .+.|.+|.+.+... .+.|+.|.|.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~l~g~---~~~g~~l~v~ 100 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPN-KEIAWQALHLVNGY---KLYGKILVIE 100 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSS-HHHHHHHHHHSTTC---BCSSCBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECC-HHHHHHHHHHhCCC---EeCCcEEEEE
Confidence 46789999999999999999999987 7899974 55666666654443 7899999999
Q ss_pred cCCCCCCC
Q psy1188 80 WADPQEEP 87 (230)
Q Consensus 80 ~a~~~~~~ 87 (230)
|+.+....
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99876554
No 303
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.53 E-value=5.1e-08 Score=67.94 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=52.8
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeee---eCce
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLS---RGCD 75 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 75 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+... .+ .++.
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g~---~~~~~~g~~ 87 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCE-RESALKAQSALHEQ---KTLPGMNRP 87 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESS-HHHHHHHHHHHTTT---CCCTTCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECC-HHHHHHHHHHhcCC---cccCCCCce
Confidence 457789999999999999999999987 8999974 66666666665554 44 7899
Q ss_pred eeeecCCCCCC
Q psy1188 76 IIVDWADPQEE 86 (230)
Q Consensus 76 i~v~~a~~~~~ 86 (230)
|.|.|+.+...
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 304
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.53 E-value=5e-08 Score=65.44 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=48.3
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
...++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+. ++ ..++|+.|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~--~~--~~~~g~~i~ 83 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD-AASVEKVLDQ--KE--HRLDGRVID 83 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS-THHHHHHHHS--SC--EEETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECC-HHHHHHHHHh--CC--CEECCEEEE
Confidence 3567899999999999999999999998 8889974 5555555544 23 379999999
Q ss_pred eecC
Q psy1188 78 VDWA 81 (230)
Q Consensus 78 v~~a 81 (230)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 305
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=3.5e-08 Score=67.50 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=51.3
Q ss_pred ccceeEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. ...|.+|...+... .+.|+.|.|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~-~~~a~~Ai~~l~g~---~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSS-KDQARQALDKLNGF---QLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESS-HHHHHHHHHHHTTC---BCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECC-HHHHHHHHHHhCCC---EECCcEEEEEEc
Confidence 357799999999999999999999987 6778864 55566666554443 889999999999
Q ss_pred CCCC
Q psy1188 82 DPQE 85 (230)
Q Consensus 82 ~~~~ 85 (230)
.+..
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8764
No 306
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.52 E-value=4.7e-08 Score=71.47 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=53.9
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
...++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+... .+.|+.|.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~-~~~A~~Ai~~l~g~---~i~g~~l~ 120 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD-KRDAEDAMDAMDGA---VLDGRELR 120 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSC-HHHHHHHHTTTTTC---CSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHcCCC---EECCEEEE
Confidence 3456799999999999999999999998 8999974 55666666554433 79999999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|.|+.+...+
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876544
No 307
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.52 E-value=8.5e-08 Score=67.35 Aligned_cols=67 Identities=10% Similarity=-0.063 Sum_probs=51.3
Q ss_pred EEeccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCce
Q psy1188 15 IFVNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCD 75 (230)
Q Consensus 15 ~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 75 (230)
-..+.++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+ +..++|+.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~-~~~A~~Ai~~~----~~~l~g~~ 95 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLAQS----RHELDSKT 95 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESS-HHHHHHHHHSS----CEEETTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECC-HHHHHHHHHHC----CCcCCCEE
Confidence 345678899999999999999999999998 7999974 55555555552 26899999
Q ss_pred eeeecCCCCCC
Q psy1188 76 IIVDWADPQEE 86 (230)
Q Consensus 76 i~v~~a~~~~~ 86 (230)
|.|.++.+...
T Consensus 96 l~V~~a~~~~~ 106 (109)
T 2rs2_A 96 IDPKVAFPRRA 106 (109)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEccCCCC
Confidence 99999987653
No 308
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=3.4e-08 Score=68.54 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=52.3
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+.+.. ..+.|+.|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g---~~~~g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD-QETALSAMRNLNG---REFSGRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSC-HHHHHHHHHHSSS---BSCSSSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECC-HHHHHHHHHHhCC---CeeCCcEEEE
Confidence 357899999999999999999999998 7899974 5566666655433 3789999999
Q ss_pred ecCCCCCC
Q psy1188 79 DWADPQEE 86 (230)
Q Consensus 79 ~~a~~~~~ 86 (230)
.|+.+...
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99977543
No 309
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.52 E-value=4.3e-08 Score=69.20 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=49.9
Q ss_pred ccceeEeecCccccccccccccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
...+|||+|||+++++++|+++|++|| +||+|.. .+.|++|.+.+ + +..+.|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~-~e~A~~Ai~~l-n--g~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPS-EEILVEALERL-N--NIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESS-HHHHHHHHHHT-T--TEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECC-HHHHHHHHHHc-C--CCEECCeEEEEEEC
Confidence 346899999999999999999999888 7889974 55565555554 3 34899999999998
Q ss_pred CCC
Q psy1188 82 DPQ 84 (230)
Q Consensus 82 ~~~ 84 (230)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 643
No 310
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.51 E-value=8.1e-08 Score=69.08 Aligned_cols=64 Identities=9% Similarity=0.095 Sum_probs=50.4
Q ss_pred ceeEeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeC--ceeeeecCCC
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRG--CDIIVDWADP 83 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~--~~i~v~~a~~ 83 (230)
-.|||+||++.+++++|+++|++|| +||+|. +...|..|.+.+... .+.+ +.|+|.|+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~-~~~~A~~A~~~LnG~---~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFE-SVLCAQKAKAALNGA---DIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEES-SHHHHHHHHHHHTTC---CCBTTBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEEC-CHHHHHHHHHHhCCC---EecCCCeEEEEEEecC
Confidence 3458999999999999999999998 788886 455666666665444 6766 6999999987
Q ss_pred CCCC
Q psy1188 84 QEEP 87 (230)
Q Consensus 84 ~~~~ 87 (230)
....
T Consensus 102 ~~l~ 105 (124)
T 2e5i_A 102 TRLN 105 (124)
T ss_dssp SCCC
T ss_pred Ccce
Confidence 7543
No 311
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.51 E-value=4.6e-08 Score=69.55 Aligned_cols=61 Identities=5% Similarity=-0.028 Sum_probs=49.0
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|..+.+.+.. ..++|+.|+|
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~l~g---~~~~g~~l~V 114 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDN-PDSAQVAIKAMNG---FQVGTKRLKV 114 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEES-SHHHHHHHHHCCC---CEETTEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECC-HHHHHHHHHHcCC---CEECCEEEEE
Confidence 457789999999999999999999998 7889974 5556666555433 3899999999
Q ss_pred ecCC
Q psy1188 79 DWAD 82 (230)
Q Consensus 79 ~~a~ 82 (230)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9873
No 312
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.51 E-value=5.8e-08 Score=72.59 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=52.8
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+.. ..+.++.|.|
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~Ai~~l~g---~~~~g~~l~V 113 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYS-RADAENAMRYING---TRLDDRIIRT 113 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHHTTT---SEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHhCC---CEECCeEEEE
Confidence 457899999999999999999999998 7899974 5566666665443 3889999999
Q ss_pred ecCCCCCC
Q psy1188 79 DWADPQEE 86 (230)
Q Consensus 79 ~~a~~~~~ 86 (230)
.|+.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99976543
No 313
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=4.8e-08 Score=67.16 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=51.2
Q ss_pred ccceeEeecCccccccccccccccCCc--------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCce--
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT--------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCD-- 75 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 75 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+.. ..+.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g---~~~~g~~~~ 83 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFAD-LATAEKCLHKING---KPLPGATPA 83 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSC-HHHHHHHHHTTTT---SEESSCSSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCC-HHHHHHHHHHHcC---CccCCCCcc
Confidence 457899999999999999999999988 6778864 5556666554433 3889998
Q ss_pred --eeeecCCCCCC
Q psy1188 76 --IIVDWADPQEE 86 (230)
Q Consensus 76 --i~v~~a~~~~~ 86 (230)
|+|.|+.+...
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 99999987654
No 314
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.51 E-value=4.1e-08 Score=71.19 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=52.0
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|...+.. ..+.|+.|.|
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~-~~~A~~Ai~~lng---~~i~g~~l~V 120 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN-VDDAKEAKERANG---MELDGRRIRV 120 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESC-HHHHHHHHHHHTT---CCSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHhCC---CEECCEEEEE
Confidence 346789999999999999999999998 8899974 5566666665544 3889999999
Q ss_pred ecCCCCC
Q psy1188 79 DWADPQE 85 (230)
Q Consensus 79 ~~a~~~~ 85 (230)
.|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 315
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.50 E-value=4.2e-08 Score=70.62 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=52.6
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
.++|||+|||+++++++|.++|++|| +||+|.+ ...|.+|...+... .+.|+.|.|.
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~v~ 97 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYET-YKEAQAAMEGLNGQ---DLMGQPISVD 97 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESS-HHHHHHHHHHHTTC---BSSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHhCCC---eeCCeEEEEE
Confidence 45789999999999999999999998 8899974 56666666655443 7899999999
Q ss_pred cCCCCCCC
Q psy1188 80 WADPQEEP 87 (230)
Q Consensus 80 ~a~~~~~~ 87 (230)
|+.+....
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99765443
No 316
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.49 E-value=3.3e-08 Score=64.37 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=46.0
Q ss_pred eeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 21 KFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
++||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+. + +..++|+.|.|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~a~~~--~--~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCEI--H--FHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSC-HHHHHHHHSS--S--CCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECC-HHHHHHHHHC--C--CCEECCEEEEEEeC
Confidence 589999999999999999999997 8899975 5556666552 3 34889999999885
No 317
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.49 E-value=6.6e-08 Score=67.45 Aligned_cols=61 Identities=10% Similarity=0.016 Sum_probs=50.3
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.+.+... .+.|+.|.|.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~V~ 103 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFER-KADALKAMKQYNGV---PLDGRPMNIQ 103 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECC-HHHHHHHHHHhCCC---EeCCcEEEEE
Confidence 457789999999999999999999998 7889974 56666666655443 8899999999
Q ss_pred cCC
Q psy1188 80 WAD 82 (230)
Q Consensus 80 ~a~ 82 (230)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 318
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.49 E-value=7.2e-08 Score=70.56 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=53.1
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|+.|| +||+|.+ .+.|.+|.+.+. ...+.|+.|+|
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~---g~~~~g~~l~v 116 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQS-GSSAQQAIAGLN---GFNILNKRLKV 116 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESS-HHHHHHHHHHTT---TEECSSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC-HHHHHHHHHHhC---CCEECCeEEEE
Confidence 457899999999999999999999998 7899974 555665555443 34899999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 319
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.48 E-value=5.5e-08 Score=72.22 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=52.2
Q ss_pred ccceeEeecCccccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ ...|..|...+... .+.|+.|.|.|+.+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFED-PRDAADAVRELDGR---TLCGCRVRVELSNG 147 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESS-HHHHHHHHHHHSSS---CSSSSCCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECC-HHHHHHHHHHcCCC---EECCeEEEEEEcCC
Confidence 457899999999999999999999998 8899974 55666666654443 78999999999976
Q ss_pred CC
Q psy1188 84 QE 85 (230)
Q Consensus 84 ~~ 85 (230)
..
T Consensus 148 ~~ 149 (150)
T 2i2y_A 148 EK 149 (150)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 320
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=4.4e-08 Score=64.02 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=46.7
Q ss_pred ceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
+++||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+. ..++|+.+.|+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~a~~~~~----~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLAQSR----HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCC-TTHHHHHHHTTT----CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcC-HHHHHHHHHhCC----CccCCEEEEEEe
Confidence 4789999999999999999999998 7899975 445555555533 489999999998
Q ss_pred C
Q psy1188 81 A 81 (230)
Q Consensus 81 a 81 (230)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 6
No 321
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=1.8e-07 Score=65.86 Aligned_cols=66 Identities=9% Similarity=-0.000 Sum_probs=52.2
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------------ceEEecchHHHHHHhhhhhcCCCeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------------KLLEYGLDKRIAGKLDDIFKTGKHLL 70 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------------~fv~~~~~~~~a~~~~~~~~~~~~~~ 70 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|...+... .
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~g~---~ 89 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED-PPTAKAAVEWFDGK---D 89 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSS-HHHHHHHHHHHTTC---E
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECC-HHHHHHHHHHcCCC---c
Confidence 457899999999999999999999985 5777864 55666666654443 7
Q ss_pred eeCceeeeecCCCCCCC
Q psy1188 71 SRGCDIIVDWADPQEEP 87 (230)
Q Consensus 71 ~~~~~i~v~~a~~~~~~ 87 (230)
+.++.|.|.|+.+....
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 89999999999876543
No 322
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=1.8e-07 Score=64.72 Aligned_cols=64 Identities=6% Similarity=0.033 Sum_probs=51.5
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.. ++ ..++|+.|.|
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~---~~--~~~~g~~l~v 87 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTE-YETQVKVMS---QR--HMIDGRWCDC 87 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESS-HHHHHHHHH---SC--EEETTEEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECC-HHHHHHHHH---cC--CeeCCeEEEE
Confidence 457899999999999999999999997 8889975 444544444 23 4899999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999887654
No 323
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=8.9e-08 Score=66.49 Aligned_cols=64 Identities=8% Similarity=-0.144 Sum_probs=50.9
Q ss_pred ccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
...+|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|... ++ ..+.++.|.|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~-~~~a~~Al~~--~~--~~~~gr~i~V~~ 88 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFAT-HEDAVAAMAK--DK--ANMQHRYVELFL 88 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSS-SHHHHHHHTT--SS--CCSSSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECC-HHHHHHHHHh--CC--CeECCcEEEEEE
Confidence 456799999999999999999999997 8999975 4455555543 33 488999999998
Q ss_pred CCCCCC
Q psy1188 81 ADPQEE 86 (230)
Q Consensus 81 a~~~~~ 86 (230)
+.+...
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876543
No 324
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.45 E-value=5.7e-08 Score=70.55 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=51.8
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCC-CeeeeeCce
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTG-KHLLSRGCD 75 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 75 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. . .|.++...+... ..+.+.|+.
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~-~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLST-I-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCH-H-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECC-H-HHHHHHHHhcCCCCCccCCCEE
Confidence 346799999999999999999999997 8899974 4 555555544332 234789999
Q ss_pred eeeecCCCCCC
Q psy1188 76 IIVDWADPQEE 86 (230)
Q Consensus 76 i~v~~a~~~~~ 86 (230)
|.|+|+.+...
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987644
No 325
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=8.4e-08 Score=66.56 Aligned_cols=66 Identities=6% Similarity=0.007 Sum_probs=52.5
Q ss_pred ccceeEeecCccccccccccccccC-Cc------------------ceEEecchHHHHHHhhhhhcCCCeee-eeCceee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPD-YT------------------KLLEYGLDKRIAGKLDDIFKTGKHLL-SRGCDII 77 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~-~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~-~~~~~i~ 77 (230)
...+|||+|||+++++++|+++|.+ || +||+|.+ .+.|.+|.+.+... . +.|+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~~g~~l~ 83 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTD-ELEQKRALTECQGA---VGLGSKPVR 83 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESC-HHHHHHHHHHTTTC---CSSSSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECC-HHHHHHHHHHccCC---cccCCEeEE
Confidence 3467899999999999999999999 98 7889974 55666666554333 6 8999999
Q ss_pred eecCCCCCCC
Q psy1188 78 VDWADPQEEP 87 (230)
Q Consensus 78 v~~a~~~~~~ 87 (230)
|.|+.+....
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999776543
No 326
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.45 E-value=4.2e-08 Score=67.81 Aligned_cols=61 Identities=10% Similarity=-0.043 Sum_probs=49.7
Q ss_pred cceeEeecCcc------ccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeC
Q psy1188 19 VRKFTMAESSR------EAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRG 73 (230)
Q Consensus 19 ~~~~~v~~l~~------~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~ 73 (230)
-++|||+|||. ++++++|+++|++|| +||+|.. ...|.+|.+.+... .+.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~-~~~A~~Ai~~lng~---~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGS-MNDAKKIIKSFHGK---RLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESS-HHHHHHHHHHHTTC---BSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECC-HHHHHHHHHHhCCc---ccCC
Confidence 35689999999 999999999999999 8999974 55666666654433 8888
Q ss_pred -ceeeeecCCC
Q psy1188 74 -CDIIVDWADP 83 (230)
Q Consensus 74 -~~i~v~~a~~ 83 (230)
+.|.|.++.+
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999865
No 327
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=1.8e-07 Score=66.02 Aligned_cols=64 Identities=5% Similarity=0.081 Sum_probs=49.9
Q ss_pred eccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeee-------
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLS------- 71 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~------- 71 (230)
...++|||+|||+++++++|+++|.+|| +||+|.. ...|.+|...+... .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~~~~~~~ 98 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMES-TEKCEAVIGHFNGK---FIKTPPGVS 98 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESC-HHHHHHHHHHHBTC---CCCCCTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECC-HHHHHHHHHHhCCC---EEcCCcccc
Confidence 3567899999999999999999999997 8899974 55566665554433 44
Q ss_pred -eCceeeeecCCCC
Q psy1188 72 -RGCDIIVDWADPQ 84 (230)
Q Consensus 72 -~~~~i~v~~a~~~ 84 (230)
.++++.|.|+++.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999998754
No 328
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=1.8e-07 Score=63.28 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=50.6
Q ss_pred ccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
...+|||+|||+++++++|+++|++|. +||+|.. .+.|.+|.. + + ...+.|+.|.|.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~-~-~--g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALK-C-N--REYMGGRYIEVFR 83 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHH-S-C--SEEETTEEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHH-h-C--CceeCCcEEEEEE
Confidence 457899999999999999999999873 8999974 555555555 2 3 3589999999999
Q ss_pred CCCCC
Q psy1188 81 ADPQE 85 (230)
Q Consensus 81 a~~~~ 85 (230)
+.+..
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97764
No 329
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.43 E-value=1.7e-07 Score=62.99 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=50.6
Q ss_pred ccceeEeecCccccccccccccccCC------------cceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDY------------TKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~------------g~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~ 85 (230)
+.+++||+|||+++++++|+++|++| -+||+|.. .+.|.+|.+.+. ...+.|+.|+|.|+....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~~~~g~afV~f~~-~~~a~~Ai~~l~---g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLN-GEQAQNAIQMFH---QYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEEGGGTEEEECCSC-HHHHHHHHHHHT---TEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCeEEEEEeCCCcEEEEEECC-HHHHHHHHHHhC---CCeECCcEEEEEEcCCCc
Confidence 35679999999999999999999987 28899974 556666655543 348999999999986543
No 330
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=2.2e-07 Score=63.04 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=50.1
Q ss_pred eEeecCcccccccc----ccccccCCc----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCC
Q psy1188 22 FTMAESSREAEEKP----SSERTPDYT----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEP 87 (230)
Q Consensus 22 ~~v~~l~~~~~e~~----l~~~f~~~g----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~ 87 (230)
+||+|||+.+++++ |.++|.+|| +||.|. +.+.|..|.+.+..- .+.|++++|.+|....+.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~-~~esA~~A~~~l~G~---~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFI-NQDSAERAQKRMENE---DVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEES-SHHHHHHHHHHHTTC---CSSSSCCEEESSCCSCCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEEC-CHHHHHHHHHHhcCC---ccCCceEEEEecCCCcce
Confidence 68999999999888 558999995 899997 466666666655444 899999999999877654
No 331
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=5.5e-08 Score=64.91 Aligned_cols=61 Identities=7% Similarity=-0.009 Sum_probs=48.2
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|..|.+.+.+. .+.++.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~g~---~~~g~~~~~ 79 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS-PSAAQKAVTALKAS---GVQAQMAKQ 79 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESC-HHHHHHHHHHHHHH---TCCEESCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECC-HHHHHHHHHHhcCC---eEeeEEEee
Confidence 356889999999999999999999998 7889974 55566666554433 788888888
Q ss_pred ecCC
Q psy1188 79 DWAD 82 (230)
Q Consensus 79 ~~a~ 82 (230)
.|+.
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7764
No 332
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=6.2e-08 Score=67.47 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=48.8
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|... + ...+.|+.|.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~-~e~a~~Ai~~--~--~~~~~gr~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS-IESAKKFVET--P--GQKYKETDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESS-HHHHHHHHTS--S--CCCCTTTTCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECC-HHHHHHHHHc--C--CCEECCEEEEEE
Confidence 457899999999999999999999998 8899974 5555555552 3 348999999999
Q ss_pred cCC
Q psy1188 80 WAD 82 (230)
Q Consensus 80 ~a~ 82 (230)
|+.
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 864
No 333
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.42 E-value=1.3e-07 Score=67.82 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=50.4
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|. .+ ++ ..+.|+.|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~-~l-~g--~~~~g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE-RNSVDAAV-AM-DE--TVFRGRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESS-HHHHHHHH-TT-TT--CEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECC-HHHHHHHH-hc-CC--CeECCeEEEE
Confidence 357899999999999999999999998 7889975 45555555 32 33 4899999999
Q ss_pred ecCCCCC
Q psy1188 79 DWADPQE 85 (230)
Q Consensus 79 ~~a~~~~ 85 (230)
.|+.+..
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9997644
No 334
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.41 E-value=7.9e-08 Score=69.51 Aligned_cols=63 Identities=6% Similarity=0.151 Sum_probs=49.6
Q ss_pred cceeEeecCcccccccccc----ccccCCc----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 19 VRKFTMAESSREAEEKPSS----ERTPDYT----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~----~~f~~~g----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
.++|||+|||+.+++++|+ ++|++|| +||+|.. .+.|..|...+.+. .+.|+.|+|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~-~~~A~~Ai~~lng~---~l~gr~l~V 104 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFAT-QESAQAFVEAFQGY---PFQGNPLVI 104 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESS-HHHHHHHHHHSTTC---CCTTSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECC-HHHHHHHHHHHCCC---EeCCCEEEE
Confidence 3578999999999998866 6899998 8899974 55666666554333 889999999
Q ss_pred ecCCCCC
Q psy1188 79 DWADPQE 85 (230)
Q Consensus 79 ~~a~~~~ 85 (230)
.|+.+..
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9997654
No 335
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=1.5e-07 Score=65.47 Aligned_cols=63 Identities=10% Similarity=-0.071 Sum_probs=50.4
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
+..+|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|... ++ ..+.++.|.|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~-~~~a~~A~~~--~~--~~~~gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFAS-QEIAEKALKK--HK--ERIGHRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESS-HHHHHHHHTT--TT--CCSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECC-HHHHHHHHHh--Cc--chhCCcEEEE
Confidence 457889999999999999999999998 7888864 5555555555 33 3889999999
Q ss_pred ecCCCCC
Q psy1188 79 DWADPQE 85 (230)
Q Consensus 79 ~~a~~~~ 85 (230)
.++.+..
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9986654
No 336
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=1.1e-07 Score=68.39 Aligned_cols=62 Identities=11% Similarity=-0.174 Sum_probs=50.2
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
....+|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.. + ++ ..+.++.|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~-~~~a~~Al~-~-~g--~~~~gr~i~ 97 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN-EADYKAALC-R-HK--QYMGNRFIQ 97 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSS-SHHHHHHHT-S-CS--BCSTTSCBE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECC-HHHHHHHHH-h-CC--CeECCcEEE
Confidence 4557899999999999999999999998 8999975 555555555 2 33 489999999
Q ss_pred eecCCC
Q psy1188 78 VDWADP 83 (230)
Q Consensus 78 v~~a~~ 83 (230)
|.++.+
T Consensus 98 V~~a~~ 103 (124)
T 1wel_A 98 VHPITK 103 (124)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998854
No 337
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.40 E-value=2.5e-07 Score=66.38 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=52.6
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..++|||+|||+++++++|+++|+.|| +||+|.+ .+.|.+|.+.+.. ..+.|+.|.|.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~g---~~~~g~~l~V~ 109 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFER-RADALKAMKQYKG---VPLDGRPMDIQ 109 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESS-HHHHHHHHHHHTT---EESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECC-HHHHHHHHHHcCC---CEECCcEEEEE
Confidence 346789999999999999999999997 7899974 5556666554433 48899999999
Q ss_pred cCCCCCCC
Q psy1188 80 WADPQEEP 87 (230)
Q Consensus 80 ~a~~~~~~ 87 (230)
|+.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99776543
No 338
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.40 E-value=1.5e-07 Score=70.37 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=52.8
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
...+|||+|||+++++++|+++|++|| +||+|.+ .+.|..|...+. +..+.|+.|.|
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~~l~---g~~~~g~~l~v 144 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD-KRDAEDAMDAMD---GAVLDGRELRV 144 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESB-HHHHHHHHHHST---TEESSSSEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECC-HHHHHHHHHHhC---CCEECCeEEEE
Confidence 457889999999999999999999998 7899975 555555555433 34899999999
Q ss_pred ecCCCCCCC
Q psy1188 79 DWADPQEEP 87 (230)
Q Consensus 79 ~~a~~~~~~ 87 (230)
.|+.+....
T Consensus 145 ~~a~~~~~~ 153 (158)
T 2kn4_A 145 QMARYGRPP 153 (158)
T ss_dssp EEECCSSCC
T ss_pred EECCCCCCC
Confidence 999876543
No 339
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=1.5e-07 Score=66.52 Aligned_cols=63 Identities=8% Similarity=-0.020 Sum_probs=50.9
Q ss_pred eccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDII 77 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 77 (230)
.+.++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|... + ...+.++.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~-~~~a~~Al~~--~--~~~~~gr~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN-EDDARKSERL--H--RKKLNGREAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSS-HHHHHHHGGG--C--SEEETTEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECC-HHHHHHHHHh--C--CCccCCeEEE
Confidence 3457789999999999999999999987 7888874 5566666554 3 4589999999
Q ss_pred eecCCCC
Q psy1188 78 VDWADPQ 84 (230)
Q Consensus 78 v~~a~~~ 84 (230)
|.++.+.
T Consensus 88 v~~a~~~ 94 (114)
T 2cpy_A 88 VHVVTLE 94 (114)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 340
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.40 E-value=8.7e-08 Score=71.80 Aligned_cols=63 Identities=11% Similarity=-0.025 Sum_probs=50.2
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCcee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDI 76 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i 76 (230)
..++|||+|||+++++++|+++|..|| +||+|.+ .+.|.+|...+... .+.|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~-~~~A~~Ai~~lng~---~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVAS-ENSVHKLLELLPGK---VLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESC-HHHHHHHHHHSTTC---EETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHcCCC---EECCeEe
Confidence 456899999999999999999999998 7888864 55666666654333 8999999
Q ss_pred eeecCCCC
Q psy1188 77 IVDWADPQ 84 (230)
Q Consensus 77 ~v~~a~~~ 84 (230)
.|.++.+.
T Consensus 130 ~V~~a~~~ 137 (156)
T 3n9u_C 130 DVRPATRQ 137 (156)
T ss_dssp EEEECCHH
T ss_pred EEEEcCCC
Confidence 99998653
No 341
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=1.2e-07 Score=66.92 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=49.2
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||+++++++|+++|.+|| +||+|.. ...|.+|. .+ + ...+.|+.|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~-~l-~--g~~~~g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAI-GL-T--GQRLLGVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHH-HH-T--TEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCc-HHHHHHHH-Hc-C--CCEeCCeEEEE
Confidence 346899999999999999999999997 8899975 44555555 33 3 34889999999
Q ss_pred ecCCCC
Q psy1188 79 DWADPQ 84 (230)
Q Consensus 79 ~~a~~~ 84 (230)
.|+.+.
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 998643
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.38 E-value=2e-07 Score=66.14 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=47.0
Q ss_pred cceeEeecCccccccccccccccCCc------------ceEEecchHHHHHHhhhhhcCCCeeeeeCce-----eeeecC
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCD-----IIVDWA 81 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----i~v~~a 81 (230)
..+|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.+.+... .+.|+. ++|..+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~-~~~a~~Ai~~l~g~---~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVR-KEDMTYAVRKLDNT---KFRSHEGETAYIRVKVD 91 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESS-HHHHHHHHHHHTTC---BCCCTTSCCCBCEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECC-HHHHHHHHHHhCCC---EECCcEeeeEEEEeccC
Confidence 46899999999999999999999997 7899974 55666666655443 788887 666666
Q ss_pred CCC
Q psy1188 82 DPQ 84 (230)
Q Consensus 82 ~~~ 84 (230)
.+.
T Consensus 92 ~~~ 94 (115)
T 3beg_B 92 GPR 94 (115)
T ss_dssp C--
T ss_pred CCC
Confidence 554
No 343
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.37 E-value=2.3e-07 Score=67.79 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=48.2
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
..++|||+|||.++++++|+++|++|| +||+|.+ .+.|.+|.+.+ +...+.|+.|+|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l---~g~~~~g~~l~v 137 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL-AEDAAAAIDNM---NESELFGRTIRV 137 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESC-HHHHHHHHHHS---TEEEETTEEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECC-HHHHHHHHHHh---CCCEECCEEEEE
Confidence 467889999999999999999999998 7899975 55555555543 345899999999
Q ss_pred ecC
Q psy1188 79 DWA 81 (230)
Q Consensus 79 ~~a 81 (230)
.||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 885
No 344
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.35 E-value=1.8e-07 Score=70.63 Aligned_cols=64 Identities=23% Similarity=0.260 Sum_probs=51.5
Q ss_pred cceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..+|||+|||+.+++++|.++|.+|| +||+|.. ...|.+|...+... .+.|+.|.|.
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~g~---~~~g~~l~V~ 147 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET-HKQALAAKEALNGA---EIMGQTIQVD 147 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECC-HHHHHHHHHHhCCC---EECCEEEEEE
Confidence 34689999999999999999999998 7889974 55666666655443 8899999999
Q ss_pred cCCCCCC
Q psy1188 80 WADPQEE 86 (230)
Q Consensus 80 ~a~~~~~ 86 (230)
|+.+...
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9976544
No 345
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.35 E-value=2.3e-07 Score=64.57 Aligned_cols=64 Identities=8% Similarity=-0.076 Sum_probs=49.3
Q ss_pred ccceeEeecCcccc------ccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCc
Q psy1188 18 NVRKFTMAESSREA------EEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGC 74 (230)
Q Consensus 18 n~~~~~v~~l~~~~------~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~ 74 (230)
..++|||+|||+.+ ++++|+++|++|| +||+|.. ...|.+|...+ ++..+.|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~-~~~A~~Ai~~l---~g~~~~g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYAS-PAHAVDAVKNA---DGYKLDKQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECS-SSHHHHHHHHC---SSEECSTT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECC-HHHHHHHHHHh---CCcccCCC
Confidence 35679999999999 6799999999998 7889975 44455555443 33489998
Q ss_pred -eeeeecCCCCC
Q psy1188 75 -DIIVDWADPQE 85 (230)
Q Consensus 75 -~i~v~~a~~~~ 85 (230)
.|.|.|+....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999997543
No 346
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.35 E-value=6e-08 Score=63.07 Aligned_cols=56 Identities=11% Similarity=0.009 Sum_probs=45.3
Q ss_pred eeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecC
Q psy1188 21 KFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWA 81 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a 81 (230)
++||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+. + ...+.|+.+.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~Ai~~--~--~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE-EEPVKKIMEK--K--YHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSS-SHHHHHHHTT--S--SCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECC-HHHHHHHHHh--C--CCeECCEEEEEEEC
Confidence 589999999999999999999987 8899975 5555555554 2 34799999999875
No 347
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.34 E-value=3.5e-07 Score=65.14 Aligned_cols=61 Identities=8% Similarity=-0.173 Sum_probs=49.2
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCcee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDI 76 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i 76 (230)
+..+|||+|||+++++++|+++|+.|| +||+|.+ .+.|.+|..+ ++ ..+.++.|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~--~g--~~~~gr~i 90 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALKK--DR--ESMGHRYI 90 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGGG--TT--EEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc--CC--CeECCeEE
Confidence 456799999999999999999999985 6899975 5566666553 33 58999999
Q ss_pred eeecCCC
Q psy1188 77 IVDWADP 83 (230)
Q Consensus 77 ~v~~a~~ 83 (230)
.|.++..
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998754
No 348
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=6.9e-07 Score=61.10 Aligned_cols=64 Identities=8% Similarity=-0.002 Sum_probs=49.3
Q ss_pred ccceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
..++|||+|+ ++++++|+++|++|| +||+|.. .+.|.+|...+. ...+.++.|.|.|+.+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~-~~~a~~Ai~~l~---g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEK-MESADQAVAELN---GTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESS-HHHHHHHHHHTT---TEEETTEEEEEECCSSC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECC-HHHHHHHHHHhC---CCeECCeEEEEEECCCC
Confidence 3467888885 899999999999998 8899974 555555555433 34889999999999876
Q ss_pred CCC
Q psy1188 85 EEP 87 (230)
Q Consensus 85 ~~~ 87 (230)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 349
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.33 E-value=2.6e-07 Score=67.97 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=50.9
Q ss_pred cceeEeecCccccccccccccccCCc------------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCc
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT------------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGC 74 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g------------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~ 74 (230)
.++|||+|||+++++++|+++|.+|| +||+|.. ...|.+|...+.. ..+.|+
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~-~~~A~~Ai~~lng---~~~~g~ 120 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPN-EKAAAKALKEANG---YVLFGK 120 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSS-HHHHHHHHHHHTT---BEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCC-HHHHHHHHHHhCC---CEeCCc
Confidence 45789999999999999999999987 6788864 5566666665433 388999
Q ss_pred eeeeecCCCCCC
Q psy1188 75 DIIVDWADPQEE 86 (230)
Q Consensus 75 ~i~v~~a~~~~~ 86 (230)
.|.|.|+.+...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 350
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.32 E-value=3.2e-07 Score=63.02 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=47.3
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------------ceEEecchHHHHHHhhhhhcCCCeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------------KLLEYGLDKRIAGKLDDIFKTGKHLL 70 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------------~fv~~~~~~~~a~~~~~~~~~~~~~~ 70 (230)
...++||+|||+++++++|+++|++|| +||+|. +.+.|.+|.+.+.+. .
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~-~~~~a~~Ai~~l~g~---~ 87 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD-DPPSAKAAIDWFDGK---E 87 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBS-SHHHHHHHHHHHTTC---B
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEEC-CHHHHHHHHHHhCCC---E
Confidence 356789999999999999999999987 466665 355566666554443 8
Q ss_pred eeCceeeeecCC
Q psy1188 71 SRGCDIIVDWAD 82 (230)
Q Consensus 71 ~~~~~i~v~~a~ 82 (230)
+.|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 899999999873
No 351
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=2e-06 Score=59.07 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=62.6
Q ss_pred cEEEEecCCCCC-C----HHHHHHHhhcCCCeEEEEEecC--EEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCC
Q psy1188 96 KVLYVRNLTQYC-T----EEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPP 167 (230)
Q Consensus 96 ~~lfV~nL~~~~-t----e~~L~~~F~~~G~i~~~~i~rg--~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~ 167 (230)
.+|+|.||+.++ . .+.++++|..|+++.....++- =.-|.|.+.++|.+|...|++..++|++|+|-++.+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 479999998766 2 2567899999999988888765 3689999999999999999999999999999999954
No 352
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.30 E-value=2.2e-07 Score=68.18 Aligned_cols=65 Identities=9% Similarity=-0.121 Sum_probs=50.8
Q ss_pred eccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
....+|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|... ++ ..+.++.|.|.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~-~e~A~~Al~~--~g--~~l~gR~i~V~ 118 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFAT-HEEAVAAMSK--DR--ANMQHRYIELF 118 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSH-HHHHHHHTTC--CS--CSSSSCCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCC-HHHHHHHHhh--CC--CEECCEEEEEE
Confidence 3456889999999999999999999997 8999974 5555555532 33 48899999999
Q ss_pred cCCCCCC
Q psy1188 80 WADPQEE 86 (230)
Q Consensus 80 ~a~~~~~ 86 (230)
++.+...
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 8876543
No 353
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=3.5e-07 Score=64.67 Aligned_cols=61 Identities=5% Similarity=0.072 Sum_probs=46.7
Q ss_pred ceeEe--ecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeee-----eCceeeee
Q psy1188 20 RKFTM--AESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLS-----RGCDIIVD 79 (230)
Q Consensus 20 ~~~~v--~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~i~v~ 79 (230)
++||| +||++++++++|+++|++|| +||+|.. .+.|.+|.+.+. ++ .+ .++++.|.
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~-~~~A~~Ai~~ln-G~--~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRT-TEESKRAYVTLN-GK--EVVDDLGQKITLYLN 101 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESS-HHHHHHHHHHTT-TC--EEECTTSCEEECEEE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECC-HHHHHHHHHHhC-CC--EEccccCCCcEEEEE
Confidence 45899 77999999999999999999 8999974 556666666543 33 44 47788888
Q ss_pred cCCCC
Q psy1188 80 WADPQ 84 (230)
Q Consensus 80 ~a~~~ 84 (230)
++...
T Consensus 102 ~a~~~ 106 (114)
T 2cq2_A 102 FVEKV 106 (114)
T ss_dssp EESCC
T ss_pred ecccC
Confidence 87643
No 354
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.27 E-value=6.8e-07 Score=65.32 Aligned_cols=61 Identities=10% Similarity=-0.121 Sum_probs=48.4
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCcee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDI 76 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i 76 (230)
...+|||+|||+++|+++|+++|++|| +||+|.+ .+.|.+|.+. +...+.++.|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~-~e~a~~Al~~----~g~~l~gr~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGS-EDDVKMALKK----DRESMGHRYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSS-HHHHHHHHTT----TEEESSSSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc----CCCEECCEEE
Confidence 356789999999999999999999996 6888974 5555555552 3458999999
Q ss_pred eeecCCC
Q psy1188 77 IVDWADP 83 (230)
Q Consensus 77 ~v~~a~~ 83 (230)
.|.++.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998753
No 355
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.25 E-value=3.7e-07 Score=63.75 Aligned_cols=61 Identities=10% Similarity=-0.075 Sum_probs=48.5
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCcee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDI 76 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i 76 (230)
...+|||+|||+++++++|+++|..|| +||+|.. .+.|.+|... ++ ..++++.|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~--~~--~~~~gr~i 84 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEK--HR--MYMGQRYV 84 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTT--TT--CCSSSSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHh--Cc--ceeCCeEE
Confidence 456789999999999999999999965 7899975 5555555553 33 37899999
Q ss_pred eeecCCC
Q psy1188 77 IVDWADP 83 (230)
Q Consensus 77 ~v~~a~~ 83 (230)
.|.++.+
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998864
No 356
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=6.2e-07 Score=62.97 Aligned_cols=61 Identities=10% Similarity=-0.104 Sum_probs=48.2
Q ss_pred ccceeEeecCccccccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
...+|||+|||+++++++|+++|++|. +||+|.. .+.|.+|... ++ ..+.++.|.|..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~-~~~a~~Al~~--~~--~~~~gr~i~V~~ 89 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLS-PQDTFEALKR--NR--MLMIQRYVEVSP 89 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSS-HHHHHHHHHT--TT--EEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc--CC--CeECCeEEEEEE
Confidence 346899999999999999999999985 8999975 5555555532 33 489999999987
Q ss_pred CCC
Q psy1188 81 ADP 83 (230)
Q Consensus 81 a~~ 83 (230)
+.+
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 743
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.24 E-value=4.6e-07 Score=72.42 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=51.7
Q ss_pred eccceeEeecCcccc---------ccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeee---
Q psy1188 17 VNVRKFTMAESSREA---------EEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLS--- 71 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~---------~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~--- 71 (230)
...++|||+||+.++ +|++|+++|++|| +||+|. +...|+.|.+++.+. .+.+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~-~~~~Ae~A~~am~g~-~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFK-YQANAEFAKEAMSNQ-TLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEES-SHHHHHHHHHHHTTC-CCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeC-CHHHHHHHHHHhCCC-EEecccc
Confidence 356789999999998 7999999999999 899997 466777777766554 3322
Q ss_pred -------eCceeeeecCCCCCCC
Q psy1188 72 -------RGCDIIVDWADPQEEP 87 (230)
Q Consensus 72 -------~~~~i~v~~a~~~~~~ 87 (230)
.|+.|.|.||.....+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.23 E-value=3.8e-07 Score=65.49 Aligned_cols=64 Identities=9% Similarity=0.056 Sum_probs=47.5
Q ss_pred cceeEeecC----ccccccccccccccCCc-------------------ceEEecc----hHHHHHHhhhhhc--CCCee
Q psy1188 19 VRKFTMAES----SREAEEKPSSERTPDYT-------------------KLLEYGL----DKRIAGKLDDIFK--TGKHL 69 (230)
Q Consensus 19 ~~~~~v~~l----~~~~~e~~l~~~f~~~g-------------------~fv~~~~----~~~~a~~~~~~~~--~~~~~ 69 (230)
+.+|||+|| |+.+++.+|+++|+.|| +||+|.. ...++.+|.+++. ..++.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 468999999 99999999999999999 8888862 1233333444433 22456
Q ss_pred eeeCceeeeecCC
Q psy1188 70 LSRGCDIIVDWAD 82 (230)
Q Consensus 70 ~~~~~~i~v~~a~ 82 (230)
.++|+.|+|.+-+
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999998753
No 359
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.23 E-value=2.4e-07 Score=73.78 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=48.3
Q ss_pred eccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCce
Q psy1188 17 VNVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCD 75 (230)
Q Consensus 17 ~n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 75 (230)
+...+|||+||++++++++|+++|.+|| +||+|.+ ...|.+|.+.+.. ..|.++.
T Consensus 66 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~-~~~a~~Ai~~lng---~~~~Gr~ 141 (229)
T 3q2s_C 66 GKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGS-EASSKKLMDLLPK---RELHGQN 141 (229)
T ss_dssp ---CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESC-TTHHHHHHTTSTT---SCBTTBC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECC-HHHHHHHHHHcCC---CeECCEE
Confidence 3567799999999999999999999998 6888874 4455555554433 3889999
Q ss_pred eeeecCCC
Q psy1188 76 IIVDWADP 83 (230)
Q Consensus 76 i~v~~a~~ 83 (230)
|+|.|+.+
T Consensus 142 l~V~~a~~ 149 (229)
T 3q2s_C 142 PVVTPVNK 149 (229)
T ss_dssp CEEEECCH
T ss_pred eEEEECCC
Confidence 99999854
No 360
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.22 E-value=3.1e-07 Score=60.72 Aligned_cols=55 Identities=9% Similarity=-0.044 Sum_probs=42.4
Q ss_pred ceeEeecCcccc------ccccccccccCCc-----------------ceEEecchHHHHHHhhhhhcCCCeeeeeCc-e
Q psy1188 20 RKFTMAESSREA------EEKPSSERTPDYT-----------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGC-D 75 (230)
Q Consensus 20 ~~~~v~~l~~~~------~e~~l~~~f~~~g-----------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~-~ 75 (230)
++|||+|||+.+ ++++|+++|++|| +||+|.. ...|.+|.+.+.. ..+.|+ .
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~-~~~A~~Ai~~lng---~~~~g~~~ 77 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYAS-PAHAVDAVKNADG---YKLDKQHT 77 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESS-HHHHHHHHTTSSS---CCCSSSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECC-HHHHHHHHHHhcC---cccCCcee
Confidence 578999999999 6799999999998 7899974 5555555555433 378888 7
Q ss_pred eee
Q psy1188 76 IIV 78 (230)
Q Consensus 76 i~v 78 (230)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 766
No 361
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.21 E-value=2.4e-07 Score=63.96 Aligned_cols=63 Identities=8% Similarity=0.013 Sum_probs=48.9
Q ss_pred ccceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
..++|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.. + ...++|+.|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~Ai~---~--~~~~~g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYN-DVDVQKIVE---S--QINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS-CCCHHHHTT---C--CCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECC-HHHHHHHHh---C--CCeECCEEEEEE
Confidence 457899999999999999999999998 7888875 334444444 3 348999999999
Q ss_pred cCCCCCC
Q psy1188 80 WADPQEE 86 (230)
Q Consensus 80 ~a~~~~~ 86 (230)
++.+...
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9865543
No 362
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.21 E-value=5.1e-07 Score=78.56 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=51.7
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
...+|||+|||+.+++++|.++|.+|| +||+|.. ...|.+|...+.. ..|.|+.|.|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~-~e~A~~Ai~~lng---~~i~gr~i~V 176 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEH-ERDMHSAYKHADG---KKIDGRRVLV 176 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeecc-HHHHHHHHHHcCC---CEECCEEEEE
Confidence 346899999999999999999999998 8888864 5556666655433 3899999999
Q ss_pred ecCCCCC
Q psy1188 79 DWADPQE 85 (230)
Q Consensus 79 ~~a~~~~ 85 (230)
.|+.+..
T Consensus 177 ~~a~~~~ 183 (437)
T 3pgw_S 177 DVERGRT 183 (437)
T ss_pred EEeCCCC
Confidence 9997654
No 363
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.20 E-value=4.3e-07 Score=69.43 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=50.9
Q ss_pred cceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
..+|||+|||+++++++|+++|.+|| +||+|.. .+.|.+|.+.+.. ..+.|+.|.|.|
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~-~~~A~~Ai~~lng---~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFER-RADALKAMKQYKG---VPLDGRPMDIQL 163 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESC-HHHHHHHHHHSTT---CBCSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCC-HHHHHHHHHHhCC---CEECCEEEEEEE
Confidence 46889999999999999999999997 7999974 5566666655433 388999999999
Q ss_pred CCCCC
Q psy1188 81 ADPQE 85 (230)
Q Consensus 81 a~~~~ 85 (230)
+.+..
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 86543
No 364
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.50 E-value=1.9e-07 Score=66.13 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=48.2
Q ss_pred ccceeEeecCccccccccccccccCCcc---------------------------eEEecchHHHHHHhhhhhcCCCeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYTK---------------------------LLEYGLDKRIAGKLDDIFKTGKHLL 70 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g~---------------------------fv~~~~~~~~a~~~~~~~~~~~~~~ 70 (230)
..++|||+|||+++++++|+++|++||. ||+|. +.+.|.+|...+ +...
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~l---~g~~ 81 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD-DPPSAKAAIDWF---DGKE 81 (116)
Confidence 3467899999999999999999999974 44443 233344444433 3348
Q ss_pred eeCceeeeecCCCCCCC
Q psy1188 71 SRGCDIIVDWADPQEEP 87 (230)
Q Consensus 71 ~~~~~i~v~~a~~~~~~ 87 (230)
+.|+.|.|.|+.+....
T Consensus 82 ~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 82 FSGNPIKVSFATRRADF 98 (116)
Confidence 89999999999876543
No 365
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.18 E-value=7.7e-07 Score=59.39 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=46.0
Q ss_pred ccceeEeecCccccccccccccccCC----c--------------------ceEEecchHHHHHHhhhhhcCCCeeeeeC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDY----T--------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRG 73 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~----g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~ 73 (230)
..+++||+|||+++++++|+++|++| | +||+|.+ .+.|.+|. .+ ++ ..+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~-~~~a~~A~-~l-~g--~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRS-VDETTQAM-AF-DG--IIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESS-HHHHHHHG-GG-TT--CEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCC-HHHHHHHH-hc-CC--CEECC
Confidence 45789999999999999999999988 4 7899975 55565555 43 33 38999
Q ss_pred ceeeeec
Q psy1188 74 CDIIVDW 80 (230)
Q Consensus 74 ~~i~v~~ 80 (230)
+.|+|++
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9998874
No 366
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.4e-05 Score=53.50 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=64.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHhhcC-----CCeEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeCCCC
Q psy1188 94 KVKVLYVRNLTQYCTEEKLKEAFEQY-----GRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168 (230)
Q Consensus 94 ~~~~lfV~nL~~~~te~~L~~~F~~~-----G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 168 (230)
...+|.|.|||++++++.|.-+|+.- |.|..+....+-|+|+|.+.+.|++.++. ..+.|++.+|.|.-.-++.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~~ 85 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPRA 85 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCCC
Confidence 34689999999999999999999872 68999998889999999999999999843 5789999999998766554
Q ss_pred c
Q psy1188 169 D 169 (230)
Q Consensus 169 ~ 169 (230)
.
T Consensus 86 ~ 86 (104)
T 2dhx_A 86 P 86 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 367
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=6.4e-07 Score=64.32 Aligned_cols=60 Identities=10% Similarity=-0.131 Sum_probs=47.1
Q ss_pred ccceeEeecCccccccccccccccCCc----------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCce
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT----------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCD 75 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g----------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 75 (230)
+..+|||+|||+++++++|+++|++|| +||+|.+ .+.|.+|.+. ++ ..+.++.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~-~~~A~~Al~~--~~--~~l~gR~ 96 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFAC-EEYAQNALRK--HK--DLLGKRY 96 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSS-HHHHHHHHTT--TT--EESSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHh--CC--CeeCCeE
Confidence 457899999999999999999999984 7889975 5555555554 33 4788998
Q ss_pred eeeecCC
Q psy1188 76 IIVDWAD 82 (230)
Q Consensus 76 i~v~~a~ 82 (230)
|.|..+.
T Consensus 97 i~V~~a~ 103 (123)
T 2dha_A 97 IELFRST 103 (123)
T ss_dssp ECCEEEC
T ss_pred EEEEECC
Confidence 8887764
No 368
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.13 E-value=1.5e-06 Score=62.07 Aligned_cols=63 Identities=8% Similarity=0.013 Sum_probs=49.7
Q ss_pred ccceeEeecCccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCC
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQ 84 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~ 84 (230)
..++|||+|+ ++++++|+++|++|| +||+|.. .+.|.+|...+... .+.|+.|.|.|+.+.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~-~~~A~~Ai~~lng~---~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEK-MESADQAVAELNGT---QVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSS-HHHHHHHHHHHTTC---BCSSCBCEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECC-HHHHHHHHHHhCCC---EECCeEEEEEEeCCC
Confidence 3467899995 699999999999998 8999974 55666666555443 789999999999876
Q ss_pred CC
Q psy1188 85 EE 86 (230)
Q Consensus 85 ~~ 86 (230)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 369
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.09 E-value=8.1e-07 Score=64.02 Aligned_cols=61 Identities=8% Similarity=-0.097 Sum_probs=47.2
Q ss_pred ccceeEeecCccccccccccccccCCc-------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT-------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIV 78 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g-------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v 78 (230)
+..+|||+|||+++++++|+++|++|+ +||+|.+ .+.|.+|.+. ++ ..+.++.|.|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~-~e~A~~Al~~--~~--~~l~gR~I~V 115 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFAS-QELAEKALGK--HK--ERIGHRYIEV 115 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESS-TTHHHHHHTT--TT--CCBTTBCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECC-HHHHHHHHHH--CC--CEECCEEEEE
Confidence 346789999999999999999999984 7889975 4455555554 22 3889999999
Q ss_pred ecCCC
Q psy1188 79 DWADP 83 (230)
Q Consensus 79 ~~a~~ 83 (230)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87743
No 370
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.08 E-value=3.5e-05 Score=51.91 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=58.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC----------EEEEEecCHHHHHHHHHHhCCcEecCc-----EeE
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD----------YAFVHFEDRQEAITAMNELNGQTVAGS-----TLE 160 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg----------~aFV~F~~~e~A~~Ai~~lng~~i~g~-----~l~ 160 (230)
.+|.|++||+++||+++.+.++....+.....+.| -|||.|.+.+++..-.+.++|+.+-+. +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 36899999999999999999999988777766643 799999999999999999999977432 456
Q ss_pred EEEeC
Q psy1188 161 VSLAK 165 (230)
Q Consensus 161 V~~a~ 165 (230)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77665
No 371
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.03 E-value=2.3e-06 Score=66.21 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=49.0
Q ss_pred cceeEeecCccccccccccccccCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
.++|||+|||+++++++|+++|++|| +||+|.+ ...|.+|.... + ..+.|+.|.|.|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~-~e~A~~A~~~~-~---~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS-IESAKKFVETP-G---QKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESS-HHHHHHHHHCT-T---CEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECC-HHHHHHHHHhC-C---CeECCEEEEEEE
Confidence 36799999999999999999999998 8999975 55555555442 2 389999999999
Q ss_pred CCCC
Q psy1188 81 ADPQ 84 (230)
Q Consensus 81 a~~~ 84 (230)
+..-
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 7643
No 372
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=6.3e-06 Score=58.05 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=43.9
Q ss_pred ccceeEeecCccccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCcee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDI 76 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i 76 (230)
..++|||+|||+++++++|+++|++|| +||+|.. .+.|.+|.+.+ + .++|+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~-~~~a~~Ai~~~---~--~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQE-ESSVQALIDAC---L--EEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSS-HHHHHHHHHHS---E--EETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECC-HHHHHHHHHhh---h--hcCCcEE
Confidence 457899999999999999999999986 7899974 55565555553 1 4667766
Q ss_pred eeecC
Q psy1188 77 IVDWA 81 (230)
Q Consensus 77 ~v~~a 81 (230)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 66544
No 373
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.74 E-value=0.00017 Score=48.72 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=45.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-cCEEEEEecCHHHHHHHHHHhC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-KDYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-rg~aFV~F~~~e~A~~Ai~~ln 150 (230)
...++| +.|+++...||.++|+.||.|. |+.+ -.-|||.|.+.+.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 346777 9999999999999999999654 4444 5599999999999999998764
No 374
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.61 E-value=0.00013 Score=49.48 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=44.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe-cCEEEEEecCHHHHHHHHHHhC
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-KDYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~-rg~aFV~F~~~e~A~~Ai~~ln 150 (230)
..++| +.|+++...||.++|+.||.| .|+.+ -.-|||.|.+.+.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 45667 999999999999999999954 45544 4599999999999999998775
No 375
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=0.00012 Score=51.29 Aligned_cols=52 Identities=8% Similarity=-0.049 Sum_probs=39.2
Q ss_pred ccccccccccCCc---------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCC
Q psy1188 32 EEKPSSERTPDYT---------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEP 87 (230)
Q Consensus 32 ~e~~l~~~f~~~g---------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~ 87 (230)
++++|+++|++|| +||+|.. ...|.+|...+... .+.|+.|.|.|+.+....
T Consensus 39 ~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~-~~~A~~Ai~~lng~---~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 39 IREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRD-PEEADYCIQTLDGR---WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp HHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSC-HHHHHHHHHHSTTC---EETTEECEEEECCSCCCS
T ss_pred HHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECC-HHHHHHHHHHcCCC---EECCcEEEEEEeCCCCCc
Confidence 3678999999998 7889974 55666666554333 789999999999876543
No 376
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.49 E-value=0.00026 Score=47.95 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=54.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC----------EEEEEecCHHHHHHHHHHhCCcEecCc-----Ee
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD----------YAFVHFEDRQEAITAMNELNGQTVAGS-----TL 159 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg----------~aFV~F~~~e~A~~Ai~~lng~~i~g~-----~l 159 (230)
+-+|.|+.||+.+||+++.+.++..-++.....+.| -|||.|.+.++...-.+..+|..+-+. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 456999999999999998888877655443333322 689999999999999999999987442 56
Q ss_pred EEEEeC
Q psy1188 160 EVSLAK 165 (230)
Q Consensus 160 ~V~~a~ 165 (230)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 677764
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.45 E-value=7e-05 Score=53.25 Aligned_cols=58 Identities=7% Similarity=-0.000 Sum_probs=45.0
Q ss_pred eEeecCccc-cccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 22 FTMAESSRE-AEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 22 ~~v~~l~~~-~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
|+|+||+++ +++++|+++|++|| +||+|......|..+.+.+.++ .+.|.+..+.++.
T Consensus 21 l~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~-~~~i~g~~~~~ev 92 (121)
T 1owx_A 21 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNG-NLQLRNKEVTWEV 92 (121)
T ss_dssp EEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTS-CBCTTSSSEEEEE
T ss_pred EEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcC-CcEEeCcEEEEEE
Confidence 599999999 99999999999999 8889974245566666666555 6788887766654
No 378
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.40 E-value=0.0011 Score=46.66 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=56.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe--cCEEEEEecCHHHHHHHHHHhCCcEecC-cEeEEEEeC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELNGQTVAG-STLEVSLAK 165 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~--rg~aFV~F~~~e~A~~Ai~~lng~~i~g-~~l~V~~a~ 165 (230)
..-|.|-+.|+.. ...+...|++||+|.+.... ..+-.|.|.+..+|++||.. ||..|+| -.|-|....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 4568888999885 45667789999999998875 35999999999999999954 9999985 667777765
No 379
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.31 E-value=8.5e-05 Score=62.38 Aligned_cols=65 Identities=5% Similarity=0.042 Sum_probs=46.1
Q ss_pred Eeccc-eeEeec--CccccccccccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCee-eeeCc--ee
Q psy1188 16 FVNVR-KFTMAE--SSREAEEKPSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHL-LSRGC--DI 76 (230)
Q Consensus 16 ~~n~~-~~~v~~--l~~~~~e~~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~-~~~~~--~i 76 (230)
..+|+ +|||+| |+..++|++|+++|++|| +||+|.+ .+.|.+|.+.+... .+ ...|+ .+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~-~~~A~~Ai~~lnG~-~~~~~~g~~~~l 91 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRT-TEESKRAYVTLNGK-EVVDDLGQKITL 91 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESS-HHHHHHHHHHTTTC-EEECTTSCEEEC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECC-HHHHHHHHHHhCCC-ccccccCCceEE
Confidence 34554 569999 689999999999999999 7999975 55666666665443 33 12234 57
Q ss_pred eeecCC
Q psy1188 77 IVDWAD 82 (230)
Q Consensus 77 ~v~~a~ 82 (230)
.+.++.
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 777764
No 380
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.96 E-value=0.00069 Score=46.85 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=44.3
Q ss_pred cccEEEEeccceeEeecCccccccccccccccCCc--------------------ceEEecchHHHHHHhhhhhcCCCee
Q psy1188 10 QKPIVIFVNVRKFTMAESSREAEEKPSSERTPDYT--------------------KLLEYGLDKRIAGKLDDIFKTGKHL 69 (230)
Q Consensus 10 ~~~~~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g--------------------~fv~~~~~~~~a~~~~~~~~~~~~~ 69 (230)
...+|++.|+-. ..++. +-++++|++.|++|| +||+|.. .+.|.+|...+...
T Consensus 7 ~s~~l~l~Nm~~--~~~l~-dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~-~~~A~~Ai~~lnG~--- 79 (105)
T 2pe8_A 7 PTKVVLLRNMVG--AGEVD-EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFER-VESAIKAVVDLNGR--- 79 (105)
T ss_dssp CCSEEEEESSSC--SCCC----CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESS-HHHHHHHHHHHTTC---
T ss_pred CCCEEEEEcCCC--hHHhh-HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECC-HHHHHHHHHHHCCC---
Confidence 344556655542 11222 235788999999998 6888864 55666666665443
Q ss_pred eeeCceeeeecCCC
Q psy1188 70 LSRGCDIIVDWADP 83 (230)
Q Consensus 70 ~~~~~~i~v~~a~~ 83 (230)
.+.|+.|.+.++.+
T Consensus 80 ~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 80 YFGGRVVKACFYNL 93 (105)
T ss_dssp EETTEECEEEECCH
T ss_pred EECCcEEEEEEcCH
Confidence 88999999999864
No 381
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.91 E-value=0.00016 Score=50.00 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=41.1
Q ss_pred EeecCccccccccccccc------------cCCc------------------ceEEecchHHHHHHhhhhhcCCCeeeee
Q psy1188 23 TMAESSREAEEKPSSERT------------PDYT------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSR 72 (230)
Q Consensus 23 ~v~~l~~~~~e~~l~~~f------------~~~g------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~ 72 (230)
.+.+|++++++++|++.| ++|| +||+|.. ...|.+|...+... .+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~-~~~A~~A~~~lng~---~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRR-EEDAEKAVIDLNNR---WFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESC-HHHHHHHHHHHTTC---EET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECC-HHHHHHHHHHHCCC---EEC
Confidence 357888888888887777 8887 8899974 55666666655433 899
Q ss_pred CceeeeecC
Q psy1188 73 GCDIIVDWA 81 (230)
Q Consensus 73 ~~~i~v~~a 81 (230)
|+.|.|.|+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999986
No 382
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.90 E-value=0.00072 Score=46.35 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=39.0
Q ss_pred cccccccccccccCCc--------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCC
Q psy1188 29 REAEEKPSSERTPDYT--------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEE 86 (230)
Q Consensus 29 ~~~~e~~l~~~f~~~g--------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~ 86 (230)
.++++++|+++|++|| +||+|.. ...|..|.+. .. .+.+++|.|.|+.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~-~~~A~~Ai~~---~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFAT-VKAAELAVQN---EV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESC-HHHHHHHHHT---CC--BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECC-HHHHHHHHHh---cC--CCCCCeEEEEEccCCCC
Confidence 4678999999999998 8999975 5555555544 22 35799999999976643
No 383
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.77 E-value=0.002 Score=45.99 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=52.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEE-EEE---------------------ecCEEEEEecCHHHHHHHHHHhCCcEe
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVER-VKR---------------------IKDYAFVHFEDRQEAITAMNELNGQTV 154 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~-~~i---------------------~rg~aFV~F~~~e~A~~Ai~~lng~~i 154 (230)
-|.|=+.|++.+.. +.+.|++||.|.+ ... -..+-.|+|.+..+|.+||.. ||..|
T Consensus 9 ~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVF 86 (132)
T ss_dssp EEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEE
T ss_pred EEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEe
Confidence 46777888776655 5566999999976 211 134779999999999999954 99999
Q ss_pred cCcEeEEEEeC
Q psy1188 155 AGSTLEVSLAK 165 (230)
Q Consensus 155 ~g~~l~V~~a~ 165 (230)
+|..|-|....
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988888775
No 384
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.53 E-value=0.0013 Score=57.12 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=40.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecC---EEEEEecCHHHHHHHHHH
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD---YAFVHFEDRQEAITAMNE 148 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg---~aFV~F~~~e~A~~Ai~~ 148 (230)
.++|||. .|..+++.+|.++|++||+|.++..-+. |+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4689997 7999999999999999999999887743 999999999999977644
No 385
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.51 E-value=0.00077 Score=46.57 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=37.9
Q ss_pred cccccccccccccCCc---------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 29 REAEEKPSSERTPDYT---------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 29 ~~~~e~~l~~~f~~~g---------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
.+..+++|++.|++|| +||+|.. .+.|.+|.+.+... .+.|+.|.+.+++.
T Consensus 25 ~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~-~~~A~~Ai~~lnG~---~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 25 YEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTS-VFDCQKAMQGLTGR---KFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESS-HHHHHHHHHHHTTC---EETTEECEEEEECH
T ss_pred HHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECC-HHHHHHHHHHhCCC---EeCCCEEEEEEeCH
Confidence 3345578999999998 6888974 56666666665443 88999999998753
No 386
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.0052 Score=41.04 Aligned_cols=47 Identities=9% Similarity=0.039 Sum_probs=37.6
Q ss_pred ccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCC
Q psy1188 34 KPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQE 85 (230)
Q Consensus 34 ~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~ 85 (230)
.+|.+.|.+|| .||+|. +.++|.+|.. +++ ..+.|+.|+|+++.+.-
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~~fVtF~-d~~sAlaAi~--mnG--~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDKMWVTFL-EGSSALNVLS--LNG--KELLNRTITIALKSPSG 87 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSSEEEEES-SHHHHHHGGG--GTT--CEETTEEEEEEECCCSS
T ss_pred HHHHHHHHhCCCeEEEEEecCCEEEEEC-ChHHHHHHHh--cCC--eEeCCeEEEEEeCCCCc
Confidence 55889999999 899997 4777777776 355 38999999999987653
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.56 E-value=0.0087 Score=40.81 Aligned_cols=75 Identities=9% Similarity=0.040 Sum_probs=54.0
Q ss_pred ceeEeecCccccccccccccccC---Cc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 20 RKFTMAESSREAEEKPSSERTPD---YT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~---~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
.+|.|.|||.++.++.|.-+|+. -| ++|.|. +...++...+. ..+.+++..+.|....+
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~-d~~va~rVL~k----~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFR-EPADAERVLAQ----ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEES-SHHHHHHHHTC----SCCBSSSSBCEEEECCC
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEc-ChHHHHHHhcC----CcceecCeEEEEEcCCC
Confidence 45789999999998888888887 22 789996 45555443333 36688889888876443
Q ss_pred CCCCCccCCCCccEEEEecCCCCCC
Q psy1188 84 QEEPDTETMSKVKVLYVRNLTQYCT 108 (230)
Q Consensus 84 ~~~~~~~~~~~~~~lfV~nL~~~~t 108 (230)
.. ..+|++.+|++.++
T Consensus 84 ~~---------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 84 RA---------PARLLLQGLPPGTS 99 (104)
T ss_dssp CC---------CCCCCCCSCCCCCC
T ss_pred CC---------cceEeeecCCCCCC
Confidence 32 34688999998875
No 388
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=95.27 E-value=0.011 Score=41.56 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=43.1
Q ss_pred cccEEEEeccceeEeecCccccccccccccccCCc-----------------------ceEEecchHHHHHHhhhhhcCC
Q psy1188 10 QKPIVIFVNVRKFTMAESSREAEEKPSSERTPDYT-----------------------KLLEYGLDKRIAGKLDDIFKTG 66 (230)
Q Consensus 10 ~~~~~~~~n~~~~~v~~l~~~~~e~~l~~~f~~~g-----------------------~fv~~~~~~~~a~~~~~~~~~~ 66 (230)
...+|++.|+-. ..+|..+ .++||++.|++|| +||+|. +.+.|.+|.+.+...
T Consensus 19 ps~vl~L~Nm~~--~~el~dd-leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~-~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 19 ESTVMVLRNMVD--PKDIDDD-LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS-IASETHKAIQALNGR 94 (118)
T ss_dssp SCCEEEEESCSC--GGGCCTT-HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEES-SHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCC--HHHHHHH-HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEEC-CHHHHHHHHHHHCCC
Confidence 344555555522 1222222 3578899999998 477786 455666666665443
Q ss_pred CeeeeeCceeeeecCC
Q psy1188 67 KHLLSRGCDIIVDWAD 82 (230)
Q Consensus 67 ~~~~~~~~~i~v~~a~ 82 (230)
.+.|+.|.+.++.
T Consensus 95 ---~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 95 ---WFAGRKVVAEVYD 107 (118)
T ss_dssp ---EETTEECEEEEEC
T ss_pred ---EECCcEEEEEEcC
Confidence 8899999999874
No 389
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.17 E-value=0.008 Score=42.07 Aligned_cols=47 Identities=11% Similarity=-0.005 Sum_probs=36.1
Q ss_pred ccccccccccCCc---------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 32 EEKPSSERTPDYT---------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 32 ~e~~l~~~f~~~g---------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
-++||++.|++|| +||+|.. .+.|.+|.+.+. ++ .++|+.|.+.|+.
T Consensus 30 l~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~-~e~A~~Ai~~ln-G~--~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS-IAAAIAAVNALH-GR--WFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSS-HHHHHHHHHHHT-TC--EETTEECEEEEEC
T ss_pred HHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECC-HHHHHHHHHHhC-CC--EECCEEEEEEEEc
Confidence 3567889999998 7899974 556666666654 43 8999999999974
No 390
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.32 E-value=0.22 Score=43.84 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=46.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNG 151 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng 151 (230)
...++|+ +|..+...+|.++|+.||.|.-..+-...|||.|.+.+.|..++.+++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 4567776 9999999999999999997543334466999999999999999998863
No 391
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.90 E-value=0.028 Score=37.70 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=34.6
Q ss_pred ccccccccCCc-----------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCC
Q psy1188 34 KPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADP 83 (230)
Q Consensus 34 ~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~ 83 (230)
.+|.+.|.+|| .||+|. +.+.|.+|.. +++ ..+.|+.|+|++..+
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~~fVtF~-d~~sAl~AI~--ldG--~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQMLVTFA-DSHSALSVLD--VDG--MKVKGRAVKISGPSS 94 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTEEEEECS-CSHHHHHHHH--GGG--SEETTEEEEEECCCC
T ss_pred HHHHHHHHHCCCEEEEEEecCcEEEEEc-ChHHHHHHHh--cCC--eeeCCeEEEEeccCC
Confidence 45889999999 899997 4666766666 344 399999999987543
No 392
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.053 Score=37.38 Aligned_cols=58 Identities=12% Similarity=-0.008 Sum_probs=41.6
Q ss_pred ccceeEeecCccccccccccccccCC-----c-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeee
Q psy1188 18 NVRKFTMAESSREAEEKPSSERTPDY-----T-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVD 79 (230)
Q Consensus 18 n~~~~~v~~l~~~~~e~~l~~~f~~~-----g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~ 79 (230)
+++.+-+-+||..+++.-|+.+.+.| + ++|+|.+.. .|.++.-++ + +..+.|++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~-~AgKasLaL-~--G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSK-FAAKMLMIL-N--GSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHH-HHHHHHHHH-S--SEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccch-hhHHHHhhc-C--CeeecCeEEEec
Confidence 46777888999999888888888887 4 999998544 444333333 3 347888888775
No 393
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.81 E-value=0.31 Score=33.16 Aligned_cols=63 Identities=8% Similarity=0.049 Sum_probs=43.1
Q ss_pred cceeEeecCcccc-ccc----cccccccCCc-------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeec
Q psy1188 19 VRKFTMAESSREA-EEK----PSSERTPDYT-------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDW 80 (230)
Q Consensus 19 ~~~~~v~~l~~~~-~e~----~l~~~f~~~g-------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~ 80 (230)
|..+++.||+.++ ..+ .++++|..|+ -.|.|. ..++|.+|+..+..- .+.|+.+++.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~-~~~~A~~AR~~Lh~~---~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFS-NPLSAADARLRLHKT---EFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECS-STTHHHHHHHTSTTS---EETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeC-ChHHHHHHHHHhccc---eecCceeEEEe
Confidence 5678999998777 333 4477888888 334553 345566666655444 89999999999
Q ss_pred CCCCC
Q psy1188 81 ADPQE 85 (230)
Q Consensus 81 a~~~~ 85 (230)
+.+..
T Consensus 81 gq~~~ 85 (104)
T 1wey_A 81 AQTLH 85 (104)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97543
No 394
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=90.93 E-value=0.62 Score=29.46 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=46.3
Q ss_pred EEEEe-cCCCCCCHHHHHHHhhcCCC-----eEEEEEecCEEEEEecCHHHHHHHHHHhCCcEecCcEeEEEEeC
Q psy1188 97 VLYVR-NLTQYCTEEKLKEAFEQYGR-----VERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 97 ~lfV~-nL~~~~te~~L~~~F~~~G~-----i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~~i~g~~l~V~~a~ 165 (230)
++||. +=-..++..+|..++..-+. |-.+.+...|.||+-.. +.|..+++.|++..+.|++++|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 46663 12356666777777776543 56788888899999876 56888999999999999999998765
No 395
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=87.30 E-value=0.24 Score=38.27 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=34.8
Q ss_pred cccccccccccCCc-----------------------ceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCC
Q psy1188 31 AEEKPSSERTPDYT-----------------------KLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWAD 82 (230)
Q Consensus 31 ~~e~~l~~~f~~~g-----------------------~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~ 82 (230)
-.++++.+.|.+|| .||+|.. .+.|.+|...+... .+.|+.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~-~~~a~~a~~~l~gr---~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSI-ASETHKAIQALNGR---WFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESS-HHHHHHHHHHHTTC---BSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECC-HHHHHHHHHHhcCc---eECCeEEEEEEcC
Confidence 34567788888888 6778864 55666666665443 8999999999874
No 396
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=73.41 E-value=0.61 Score=33.96 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=21.9
Q ss_pred HHHHHHhhcCCCeEEEEEecCEEEEEec
Q psy1188 110 EKLKEAFEQYGRVERVKRIKDYAFVHFE 137 (230)
Q Consensus 110 ~~L~~~F~~~G~i~~~~i~rg~aFV~F~ 137 (230)
+|+.++|...|.|+.....||||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CcccccccceeEEEEEECCCCeeEEeeC
Confidence 5677888999999999999999999976
No 397
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=69.53 E-value=21 Score=23.38 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=57.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHhhcCCCeEEEEEecCEEEEEecCHHHHHHHHHHhCCc-------EecCcEeEEEEeCCC
Q psy1188 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQ-------TVAGSTLEVSLAKPP 167 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~rg~aFV~F~~~e~A~~Ai~~lng~-------~i~g~~l~V~~a~~~ 167 (230)
.+-|-|-|+|..+-..++.-.....|---.|..+.|-|.|.|.+.++..-|+..|-++ +|.|.-..|--..|.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvistipe 91 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVISTIPE 91 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEECCCCH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeeeecCCc
Confidence 4567788999999998888777888888889999999999999999999999876332 456665555544443
No 398
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=66.96 E-value=4.5 Score=26.69 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=22.6
Q ss_pred cceeEeecCccccccccccccccCCc
Q psy1188 19 VRKFTMAESSREAEEKPSSERTPDYT 44 (230)
Q Consensus 19 ~~~~~v~~l~~~~~e~~l~~~f~~~g 44 (230)
+.|+.|++||+..||+++.+.+..+.
T Consensus 1 ~~KvVIRrLPP~LteeeF~~~l~~~~ 26 (91)
T 1uw4_A 1 LSKVVIRRLPPTLTKEQLQEHLQPMP 26 (91)
T ss_dssp CCEEEEEEECTTCCHHHHHHHHCSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHhcCcc
Confidence 46899999999999999988888755
No 399
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=66.93 E-value=2.6 Score=28.31 Aligned_cols=42 Identities=2% Similarity=-0.090 Sum_probs=31.5
Q ss_pred eeEeecCccccccccccccccCCc-----------ceEEecchHHHHHHhhhhh
Q psy1188 21 KFTMAESSREAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDIF 63 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~~ 63 (230)
.+|+-..|.+..-.||..+|+.|| +|+-|.. ...|..+..++
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~-~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQ-PEQVQIAVNTS 69 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSC-HHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecC-HHHHHHHHHhc
Confidence 344449999999999999999998 8888864 55555555544
No 400
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=62.82 E-value=2.8 Score=28.17 Aligned_cols=41 Identities=2% Similarity=-0.070 Sum_probs=29.7
Q ss_pred eeEeecCccccccccccccccCCc-----------ceEEecchHHHHHHhhhh
Q psy1188 21 KFTMAESSREAEEKPSSERTPDYT-----------KLLEYGLDKRIAGKLDDI 62 (230)
Q Consensus 21 ~~~v~~l~~~~~e~~l~~~f~~~g-----------~fv~~~~~~~~a~~~~~~ 62 (230)
.+|.-+.|.+..-.||..+|+.|| +|+-|.. ...|..+..+
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~-~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQ-PEQVKIAVNT 58 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEE-ECHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecC-HHHHHHHHHh
Confidence 344449999999999999999998 7777754 3344444443
No 401
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.48 E-value=5.1 Score=24.58 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=16.5
Q ss_pred CCeEEEEEecCEEEEEecCH
Q psy1188 120 GRVERVKRIKDYAFVHFEDR 139 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F~~~ 139 (230)
|+|..|...+..+||.|.|.
T Consensus 28 GtV~kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDSAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEecCCcEEEEEEccC
Confidence 67777777788999999873
No 402
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=49.14 E-value=8.2 Score=24.37 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=17.3
Q ss_pred CCeEEEEEecCEEEEEecCH
Q psy1188 120 GRVERVKRIKDYAFVHFEDR 139 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F~~~ 139 (230)
|+|..|...++.++|.|.|.
T Consensus 45 GTI~kV~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEeccCCCEEEEEEcCC
Confidence 78888888899999999874
No 403
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=46.47 E-value=6 Score=26.43 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=21.9
Q ss_pred ceeEeecCccccccccccccccCCcc
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYTK 45 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g~ 45 (230)
-|+.|+.||+..||+++.+.+..+-.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~ 35 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA 35 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc
Confidence 47899999999999998888877544
No 404
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=43.25 E-value=68 Score=24.99 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=24.5
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeEEEEEe
Q psy1188 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 128 (230)
Q Consensus 98 lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~ 128 (230)
..|+|||++++...|..++.....+....++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 3799999999999999999876666554433
No 405
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=42.85 E-value=50 Score=26.12 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEE
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVK 126 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~ 126 (230)
.+.|+|||++++..-|.+++.. ..+....
T Consensus 112 ~~iv~NlPy~iss~il~~ll~~-~~~~~~~ 140 (271)
T 3fut_A 112 SLLVANLPYHIATPLVTRLLKT-GRFARLV 140 (271)
T ss_dssp EEEEEEECSSCCHHHHHHHHHH-CCEEEEE
T ss_pred cEEEecCcccccHHHHHHHhcC-CCCCEEE
Confidence 5789999999999999999987 6655443
No 406
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.83 E-value=4.2 Score=24.59 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=13.7
Q ss_pred CCeEEEEEecCEEEEEecCH
Q psy1188 120 GRVERVKRIKDYAFVHFEDR 139 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F~~~ 139 (230)
|+|..|...+..|||.|.|.
T Consensus 26 gtV~kV~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 26 GKIKRVSSSKQSCLVTFEDN 45 (63)
T ss_dssp EEECCCCSTTSEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEccC
Confidence 44555555577899999873
No 407
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=42.65 E-value=12 Score=22.95 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=16.1
Q ss_pred CCeEEEEEecCEEEEEecCH
Q psy1188 120 GRVERVKRIKDYAFVHFEDR 139 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F~~~ 139 (230)
|+|..|.-.++.++|.|.|-
T Consensus 32 gtI~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEccCCcEEEEEEccC
Confidence 56777777789999999873
No 408
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=38.91 E-value=15 Score=21.81 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=15.9
Q ss_pred CCeEEEEEecCEEEEEecCH
Q psy1188 120 GRVERVKRIKDYAFVHFEDR 139 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F~~~ 139 (230)
|+|..|...++.++|.|.|.
T Consensus 22 GtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEcCC
Confidence 67777777778999999874
No 409
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=34.59 E-value=80 Score=21.00 Aligned_cols=68 Identities=15% Similarity=0.339 Sum_probs=39.8
Q ss_pred ccEEEEecCCCCCCHHH--HHHHhhc-----C---C-----CeEEEEEe------c----CEEEEEec---CHHHHHHHH
Q psy1188 95 VKVLYVRNLTQYCTEEK--LKEAFEQ-----Y---G-----RVERVKRI------K----DYAFVHFE---DRQEAITAM 146 (230)
Q Consensus 95 ~~~lfV~nL~~~~te~~--L~~~F~~-----~---G-----~i~~~~i~------r----g~aFV~F~---~~e~A~~Ai 146 (230)
.++|.|-++|....+.. +..+|.. | + .|..+.-. + ..-.|.|. +.|...+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 35799999998743332 4455432 2 1 24444322 1 14445555 455556666
Q ss_pred HHhCCcEecCcEeEEE
Q psy1188 147 NELNGQTVAGSTLEVS 162 (230)
Q Consensus 147 ~~lng~~i~g~~l~V~ 162 (230)
......+..|.+|++.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 6656678899999885
No 410
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=32.71 E-value=17 Score=22.20 Aligned_cols=20 Identities=20% Similarity=0.425 Sum_probs=14.7
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|+....-||||||+=.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEECCCCeEEEecCC
Confidence 36666666669999998654
No 411
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=32.40 E-value=17 Score=22.02 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=14.7
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|+....-||||||+=.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEG 22 (66)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEEECCCCeEEEecCC
Confidence 36666666679999998654
No 412
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=30.61 E-value=19 Score=22.36 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=14.7
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|+....-||||||+=.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEEEEETTTTEEEEECTT
T ss_pred CEEEEEEECCCCEEEEecCC
Confidence 36666666679999998654
No 413
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=29.98 E-value=1.2e+02 Score=19.93 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=36.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhcC--------CCeEEEEEe-------------cC-EEEEEecCHHHHHHHHHHhCCcEe
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQY--------GRVERVKRI-------------KD-YAFVHFEDRQEAITAMNELNGQTV 154 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~--------G~i~~~~i~-------------rg-~aFV~F~~~e~A~~Ai~~lng~~i 154 (230)
.+|| |.++++++++.++.++| |.|..+... +| |.++.|....++.+-++. ...+
T Consensus 6 ~~~I--l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler--~lr~ 81 (101)
T 1cqm_A 6 VNIV--LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLAR--ELRI 81 (101)
T ss_dssp EEEE--ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHH--HHHT
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHH--HhcC
Confidence 4555 57778888777655544 456665533 23 899999887666555543 2244
Q ss_pred cCcEeEE
Q psy1188 155 AGSTLEV 161 (230)
Q Consensus 155 ~g~~l~V 161 (230)
+...|+-
T Consensus 82 ~~~VlR~ 88 (101)
T 1cqm_A 82 RDNVRRV 88 (101)
T ss_dssp STTEEEE
T ss_pred CcceEEE
Confidence 5544443
No 414
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=29.92 E-value=36 Score=22.56 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=18.5
Q ss_pred CCHHHHHHHhhcCCCeEEEEEec
Q psy1188 107 CTEEKLKEAFEQYGRVERVKRIK 129 (230)
Q Consensus 107 ~te~~L~~~F~~~G~i~~~~i~r 129 (230)
.+++.+++.|+..|.|..-+..-
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MFG 26 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMFG 26 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEETT
T ss_pred hHHHHHHHHHhccCCceEeeccC
Confidence 46788999999999998876553
No 415
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=29.91 E-value=20 Score=21.73 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=14.0
Q ss_pred CCeEEEEEecCEEEEEecC
Q psy1188 120 GRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F~~ 138 (230)
|.|+....-||||||+=.+
T Consensus 3 G~Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 5566666669999998664
No 416
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.82 E-value=97 Score=22.83 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=32.3
Q ss_pred EEEEecCCC-C--------CCHHHHHHHh--hcCCCeEEEEEe-----cCEEEEEecC-HHHHHHHH
Q psy1188 97 VLYVRNLTQ-Y--------CTEEKLKEAF--EQYGRVERVKRI-----KDYAFVHFED-RQEAITAM 146 (230)
Q Consensus 97 ~lfV~nL~~-~--------~te~~L~~~F--~~~G~i~~~~i~-----rg~aFV~F~~-~e~A~~Ai 146 (230)
++.|-|+|. . .+..+|++.| +.|.++....+. .|++.|.|.+ -.--..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 355667765 1 3457899977 999887644443 4589999995 33334443
No 417
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=28.99 E-value=26 Score=21.90 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=14.6
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|+....-||||||+=.+
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~d 23 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDEN 23 (74)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEECCCCeEEEecCC
Confidence 36666666669999998765
No 418
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.49 E-value=1.3e+02 Score=19.40 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=25.6
Q ss_pred eEEEEEe---cCEEEEEecCHHHHHHHHHHhCCc
Q psy1188 122 VERVKRI---KDYAFVHFEDRQEAITAMNELNGQ 152 (230)
Q Consensus 122 i~~~~i~---rg~aFV~F~~~e~A~~Ai~~lng~ 152 (230)
|.++.++ .||-||++...++...+++...|.
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 5666654 799999999999999998887775
No 419
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=27.15 E-value=28 Score=27.74 Aligned_cols=32 Identities=13% Similarity=-0.040 Sum_probs=25.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEEEEe
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 128 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~~i~ 128 (230)
...|+|||++++..-|.+++.....+..+.++
T Consensus 116 ~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 116 LRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred eEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 57899999999999999999865556554443
No 420
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.96 E-value=24 Score=22.29 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=14.3
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|+...--||||||+=.+
T Consensus 10 ~G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 10 LGTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEEETTTTEEEEEEGG
T ss_pred ceEEEEEECCCCcEEEecCC
Confidence 36666666669999998654
No 421
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=26.90 E-value=30 Score=21.62 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=14.2
Q ss_pred CCeEEEEEecCEEEEEecC
Q psy1188 120 GRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F~~ 138 (230)
|.|+....-||||||+=.+
T Consensus 3 G~Vkwfn~~KGfGFI~~~d 21 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDD 21 (74)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 5566666669999998765
No 422
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=26.38 E-value=1.5e+02 Score=22.91 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=41.7
Q ss_pred ccEEEEecCCCCCC--HHHHHHHhhc-----CCC--------eEEEEEe-------c---CEEEEEec---CHHHHHHHH
Q psy1188 95 VKVLYVRNLTQYCT--EEKLKEAFEQ-----YGR--------VERVKRI-------K---DYAFVHFE---DRQEAITAM 146 (230)
Q Consensus 95 ~~~lfV~nL~~~~t--e~~L~~~F~~-----~G~--------i~~~~i~-------r---g~aFV~F~---~~e~A~~Ai 146 (230)
.++|.|-++|.... +..+..+|.. |.. |..+.-. + ..-.|.|. +.|...+|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 45799999999876 4445555532 432 2333211 1 13445555 455555555
Q ss_pred HHhCCcEecCcEeEEEEeC
Q psy1188 147 NELNGQTVAGSTLEVSLAK 165 (230)
Q Consensus 147 ~~lng~~i~g~~l~V~~a~ 165 (230)
......+..|.+|++.-.-
T Consensus 132 R~k~~vtykG~pIrlsaDf 150 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTVDL 150 (233)
T ss_dssp HTTSCEEETTEEEEEEECC
T ss_pred HHhcccccCCCceEEeCCC
Confidence 5555678899998876443
No 423
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=25.51 E-value=1e+02 Score=19.29 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=36.2
Q ss_pred CCcceEEecchHHHHHHhhhhhcCCCeeeeeCceeeeecCCCCCCCCccCCCCccEEEEecCCCCCCHHHHHHHhhcC
Q psy1188 42 DYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY 119 (230)
Q Consensus 42 ~~g~fv~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~v~~a~~~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~ 119 (230)
.|..+++|..+..+...+.+.+.-. .-.+. .+.+..-.+. ..-++|| |.++++++++....++|
T Consensus 5 G~Yvl~~~~a~~~~i~Eler~~rin-e~VlR--~l~vr~d~~r---------~YE~m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 5 GYTTWYQVEMPEDRVNDLARELRIR-DNVRR--VMVVASTTPG---------RYEVNIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp TTEEEEEEECCHHHHHHHHHHHHTS-TTEEE--EEEEECSSTT---------EEEEEEE--ECTTCCHHHHHHHHHHH
T ss_pred EEEEEEEEEeCHhHHHHHHHHhCCC-HHHHH--HHHHhccCCC---------ceEEEEE--ECCCCCHHHHHHHHHHH
Confidence 4556778876555555666554222 11222 2223222111 2346888 78899999988887765
No 424
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=25.11 E-value=15 Score=31.77 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=23.0
Q ss_pred ceeEeecCccccccccccccccCCc--------------ceEEecc
Q psy1188 20 RKFTMAESSREAEEKPSSERTPDYT--------------KLLEYGL 51 (230)
Q Consensus 20 ~~~~v~~l~~~~~e~~l~~~f~~~g--------------~fv~~~~ 51 (230)
+.++|. .|.+.++.+|.++|.+|| +.|||..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~ 98 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQ 98 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC-
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCC
Confidence 556776 789999999999999999 7788864
No 425
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=23.67 E-value=34 Score=24.58 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=15.7
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|+....-||||||+-.+
T Consensus 64 ~GtVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 64 KGVCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEeCCCCeEEeccCC
Confidence 47777666679999999875
No 426
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=23.24 E-value=31 Score=22.50 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=11.3
Q ss_pred CCeEEEEEecCEEEEEe
Q psy1188 120 GRVERVKRIKDYAFVHF 136 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F 136 (230)
|.|+-....||||||+-
T Consensus 11 G~VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 11 GHCKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEEEEeeCCCCeEEeEe
Confidence 45554455589999963
No 427
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=22.17 E-value=44 Score=20.55 Aligned_cols=18 Identities=22% Similarity=0.676 Sum_probs=13.1
Q ss_pred CCeEEEEEecCEEEEEecCH
Q psy1188 120 GRVERVKRIKDYAFVHFEDR 139 (230)
Q Consensus 120 G~i~~~~i~rg~aFV~F~~~ 139 (230)
|+| |...+.-++|.|+|.
T Consensus 34 GtI--Vd~~~~~ClV~FeD~ 51 (69)
T 2xk0_A 34 GTI--IDQTSDQYLIRFDDQ 51 (69)
T ss_dssp EEE--EEECSSCEEEEETTC
T ss_pred EEE--EecCCceEEEEecCC
Confidence 455 455588899999874
No 428
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=21.65 E-value=2.2e+02 Score=20.13 Aligned_cols=35 Identities=11% Similarity=0.362 Sum_probs=26.1
Q ss_pred HHHhhcCCCeEEEEEe-----cC------------------EEEEEecCHHHHHHHHH
Q psy1188 113 KEAFEQYGRVERVKRI-----KD------------------YAFVHFEDRQEAITAMN 147 (230)
Q Consensus 113 ~~~F~~~G~i~~~~i~-----rg------------------~aFV~F~~~e~A~~Ai~ 147 (230)
.++|..||-+..+... .| |.+|+|.|.+...++..
T Consensus 51 ~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~ 108 (141)
T 2okq_A 51 APLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQ 108 (141)
T ss_dssp HHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHH
Confidence 3689999987666533 11 89999999888887764
No 429
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=21.48 E-value=2e+02 Score=19.78 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=19.3
Q ss_pred CCCeEEEEEecC--EE--EEE-ecCHHHHHHHHHHhC
Q psy1188 119 YGRVERVKRIKD--YA--FVH-FEDRQEAITAMNELN 150 (230)
Q Consensus 119 ~G~i~~~~i~rg--~a--FV~-F~~~e~A~~Ai~~ln 150 (230)
+=+|..|++..+ +| ||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHH
Confidence 457899999977 44 555 445554444444444
No 430
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=21.47 E-value=44 Score=20.52 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=15.7
Q ss_pred cCCCeEEEEEecCEEEEEecC
Q psy1188 118 QYGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 118 ~~G~i~~~~i~rg~aFV~F~~ 138 (230)
..|.|+.....||||||+=.+
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~ 26 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPED 26 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETT
T ss_pred ccEEEEEEECCCCcEEEecCC
Confidence 346777666679999998765
No 431
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=26.50 E-value=20 Score=22.03 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=15.2
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|+....-||||||+=.+
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~ 25 (70)
T 2lss_A 6 VGKVKWYNSTKNFGFIEQDN 25 (70)
Confidence 36777777779999998654
No 432
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.96 E-value=86 Score=24.33 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=22.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeEEE
Q psy1188 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERV 125 (230)
Q Consensus 97 ~lfV~nL~~~~te~~L~~~F~~~G~i~~~ 125 (230)
.+.|+|||+.++...|.+++.....+..+
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 57899999999999998888754444433
No 433
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=20.59 E-value=1.1e+02 Score=20.47 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=30.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC--------CCeEEEEEe-------------cC-EEEEEecC-HHHHHHHH
Q psy1188 96 KVLYVRNLTQYCTEEKLKEAFEQY--------GRVERVKRI-------------KD-YAFVHFED-RQEAITAM 146 (230)
Q Consensus 96 ~~lfV~nL~~~~te~~L~~~F~~~--------G~i~~~~i~-------------rg-~aFV~F~~-~e~A~~Ai 146 (230)
-.+|| |.++++++++.++..+| |.|..+... +| |.++.|.. ..++.+-+
T Consensus 11 E~~~I--l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~el 82 (110)
T 2j5a_A 11 ETVFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNEL 82 (110)
T ss_dssp EEEEE--ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHH
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHH
Confidence 45666 67788888876655444 346665533 12 89999987 55554444
No 434
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=20.35 E-value=42 Score=21.69 Aligned_cols=18 Identities=22% Similarity=0.589 Sum_probs=12.7
Q ss_pred CCCeEEEEEecCEEEEEecC
Q psy1188 119 YGRVERVKRIKDYAFVHFED 138 (230)
Q Consensus 119 ~G~i~~~~i~rg~aFV~F~~ 138 (230)
.|.|.... +|||||+-.+
T Consensus 20 ~G~Vk~f~--kGfGFI~~dd 37 (88)
T 2yty_A 20 LGYVATLK--DNFGFIETAN 37 (88)
T ss_dssp EEEEEEEC--SSEEEEECSS
T ss_pred eEEEEEEE--CCccEEecCC
Confidence 46666554 8999998654
No 435
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=20.15 E-value=1e+02 Score=27.77 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=36.3
Q ss_pred cCCCCCCHHHHHHHhh----cCCCeEEEEEe-------cCEEEEEecCHHHHHHHHHHhC
Q psy1188 102 NLTQYCTEEKLKEAFE----QYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150 (230)
Q Consensus 102 nL~~~~te~~L~~~F~----~~G~i~~~~i~-------rg~aFV~F~~~e~A~~Ai~~ln 150 (230)
..+.+.+--||..+|- .+|-|.++.+. +.++++.|.+.++|..++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 3455555567888883 56778887755 3478999999999999987764
Done!