Your job contains 1 sequence.
>psy1188
MAIQASIKNQKPIVIFVNVRKFTMAESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLD
DIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG
RVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNR
ERRMMQMMQGRGGPGPSGAHAPLLTGPPMPRGSVPLQAALSSTRMGRGDY
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1188
(230 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 443 4.5e-54 2
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd... 330 1.4e-31 2
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 309 1.6e-30 2
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 309 3.2e-30 2
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 309 3.3e-30 2
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 309 3.7e-30 2
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ... 306 6.8e-30 2
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 327 1.6e-29 1
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 332 3.1e-29 1
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 298 3.4e-29 2
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r... 327 7.5e-29 1
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein... 327 7.7e-29 1
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc... 327 9.3e-29 1
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r... 327 9.3e-29 1
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein... 327 9.3e-29 1
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein... 327 9.3e-29 1
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r... 327 9.3e-29 1
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 308 1.7e-27 1
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 315 1.8e-27 1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 306 9.8e-27 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 306 9.8e-27 1
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 308 1.4e-26 1
UNIPROTKB|F1LM17 - symbol:F1LM17 "Uncharacterized protein... 280 2.8e-24 1
UNIPROTKB|F1NZU2 - symbol:SYNCRIP "Uncharacterized protei... 249 3.6e-24 2
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized... 275 1.6e-23 1
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"... 275 1.8e-23 1
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro... 275 1.8e-23 1
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"... 275 2.6e-23 1
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"... 275 2.6e-23 1
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro... 275 2.6e-23 1
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"... 275 2.6e-23 1
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"... 275 2.6e-23 1
ZFIN|ZDB-GENE-061013-298 - symbol:rbm46 "RNA binding moti... 274 2.8e-23 1
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ... 268 2.9e-23 1
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein... 273 4.2e-23 1
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 272 7.3e-23 1
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 271 9.4e-23 1
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 270 1.2e-22 1
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 269 1.6e-22 1
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 269 1.6e-22 1
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 268 1.7e-22 1
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"... 268 2.0e-22 1
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"... 268 2.0e-22 1
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 268 2.0e-22 1
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ... 266 2.6e-22 1
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"... 266 3.4e-22 1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 264 5.4e-22 1
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 264 5.4e-22 1
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 264 5.5e-22 1
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 264 5.5e-22 1
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 264 5.5e-22 1
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 264 5.5e-22 1
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 263 5.6e-22 1
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ... 263 7.0e-22 1
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 263 7.1e-22 1
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei... 229 1.7e-21 2
ZFIN|ZDB-GENE-030131-9612 - symbol:si:ch211-241e15.2 "si:... 259 2.0e-21 1
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"... 252 3.1e-21 1
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"... 252 5.5e-21 1
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 177 9.9e-13 1
ZFIN|ZDB-GENE-040426-2455 - symbol:rbm14b "RNA binding mo... 155 5.7e-10 1
TAIR|locus:2083248 - symbol:AT3G52660 species:3702 "Arabi... 150 6.8e-09 1
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 131 1.0e-08 1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 131 1.0e-08 1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 131 1.0e-08 1
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp... 128 2.4e-08 1
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp... 128 2.4e-08 1
UNIPROTKB|E9PB51 - symbol:RBM4 "RNA-binding protein 4" sp... 140 3.7e-08 1
ZFIN|ZDB-GENE-040426-1811 - symbol:zgc:77262 "zgc:77262" ... 142 5.5e-08 1
UNIPROTKB|E2RS43 - symbol:RBM14 "Uncharacterized protein"... 145 7.2e-08 1
UNIPROTKB|Q96PK6 - symbol:RBM14 "RNA-binding protein 14" ... 145 7.2e-08 1
MGI|MGI:1913954 - symbol:Rbm4b "RNA binding motif protein... 141 8.8e-08 1
RGD|1359343 - symbol:Rbm4b "RNA binding motif protein 4B"... 141 8.8e-08 1
UNIPROTKB|Q64LC9 - symbol:Rbm4b "RNA-binding protein 4B" ... 141 8.8e-08 1
UNIPROTKB|Q2KIV3 - symbol:RBM4B "Uncharacterized protein"... 141 8.9e-08 1
UNIPROTKB|E2RSD7 - symbol:RBM4B "Uncharacterized protein"... 141 8.9e-08 1
UNIPROTKB|Q9BQ04 - symbol:RBM4B "RNA-binding protein 4B" ... 141 8.9e-08 1
UNIPROTKB|Q06AT9 - symbol:RBM4B "RNA-binding protein 4B" ... 141 8.9e-08 1
UNIPROTKB|Q9BDY9 - symbol:RBM4 "RNA-binding protein 4" sp... 141 8.9e-08 1
UNIPROTKB|D4A1W5 - symbol:Rbm4 "Protein Rbm4" species:101... 141 9.0e-08 1
UNIPROTKB|E5RG67 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 123 9.4e-08 1
UNIPROTKB|E5RGV5 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 123 9.4e-08 1
UNIPROTKB|Q3MHX3 - symbol:RBM4 "RNA-binding protein 4" sp... 140 1.3e-07 1
UNIPROTKB|Q9BWF3 - symbol:RBM4 "RNA-binding protein 4" sp... 140 1.3e-07 1
UNIPROTKB|Q4R979 - symbol:RBM4 "RNA-binding protein 4" sp... 140 1.3e-07 1
UNIPROTKB|E2RS70 - symbol:RBM4 "Uncharacterized protein" ... 140 1.3e-07 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 121 1.6e-07 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 121 1.6e-07 1
ZFIN|ZDB-GENE-030131-3902 - symbol:rbm4.1 "RNA binding mo... 140 1.7e-07 1
UNIPROTKB|F1MI47 - symbol:RBM14 "RNA-binding protein 14" ... 142 1.9e-07 1
UNIPROTKB|Q5EA36 - symbol:RBM14 "RNA-binding protein 14" ... 142 1.9e-07 1
MGI|MGI:1929092 - symbol:Rbm14 "RNA binding motif protein... 142 1.9e-07 1
GENEDB_PFALCIPARUM|PFL1200c - symbol:PFL1200c "hypothetic... 120 2.1e-07 1
UNIPROTKB|Q8I5G8 - symbol:PFL1200c "Splicing factor 3b su... 120 2.1e-07 1
ZFIN|ZDB-GENE-030131-3019 - symbol:rbm4.2 "RNA binding mo... 135 6.6e-07 1
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 114 1.1e-06 1
UNIPROTKB|H7BY49 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 114 1.1e-06 1
UNIPROTKB|H9L1A3 - symbol:LOC100859076 "Uncharacterized p... 130 1.7e-06 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 121 3.8e-06 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 127 4.1e-06 1
WARNING: Descriptions of 296 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 443 (161.0 bits), Expect = 4.5e-54, Sum P(2) = 4.5e-54
Identities = 90/151 (59%), Positives = 106/151 (70%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA 132
GCDIIVDWADPQEEPD +TMSKVKVLYVRNLTQ +E+KLKE FEQYG+VERVK+IKDYA
Sbjct: 317 GCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKDYA 376
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR--NXXXXXXXXXXX 190
F+HFEDR A+ AM LNG+ + S +EVSLAKPPSDKKKKEEILR
Sbjct: 377 FIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKPPSDKKKKEEILRARERRMMQMMQARP 436
Query: 191 XXXXXXSGAHAPLLTGPPM-PRGSVPLQAAL 220
S H +++ PM P +PL+ +
Sbjct: 437 GIVGNLSPTHPSIMSLTPMRPGARMPLRTPI 467
Score = 143 (55.4 bits), Expect = 4.5e-54, Sum P(2) = 4.5e-54
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 28 SREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTGK 67
+++A+++ ERT DY KLLEYGLDK++AGKLD+I+KTGK
Sbjct: 13 NQKADDRGDGERTEDYPKLLEYGLDKKVAGKLDEIYKTGK 52
Score = 65 (27.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 129 KDYAFVHFEDRQEAITAMNELNGQTVA-GSTLEVSLAKP 166
+ YAFV F +R+ A+ A+ +L+ + G L+++++ P
Sbjct: 205 RGYAFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVP 243
Score = 39 (18.8 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 151 GQTVAGSTLEVSLAKPPSDKKK 172
G+ AG EV + P DKKK
Sbjct: 266 GKLTAG-LYEVIIYSSPDDKKK 286
>WB|WBGene00002000 [details] [associations]
symbol:hrp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
Length = 611
Score = 330 (121.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 59/111 (53%), Positives = 82/111 (73%)
Query: 64 KTGKHLLSR-GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRV 122
K +H + D+ VDWA+ QEEPD +TMSKVKVLY+RN+ + TEEKL E F++Y +
Sbjct: 344 KIAQHKIRPFNADVYVDWAEHQEEPDEDTMSKVKVLYIRNIKEAVTEEKLNELFKEYASL 403
Query: 123 ERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKK 173
+RVK++KDYAF+HF +R + + AM E NG+ + G+ +E SLAKPP +KKKK
Sbjct: 404 DRVKKVKDYAFIHFNERDDCLKAMEEWNGKELEGTVVEASLAKPPQEKKKK 454
Score = 45 (20.9 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 25 AESSREAEEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTG----KHLLSRGCDII 77
AE+ + E +E T +Y KL+ + +A + +I+++G + L R DII
Sbjct: 43 AENGKTEEPSKYAE-TENYKKLIGLKMKPALADVVCEIYESGLLGPEDLDDRAVDII 98
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 309 (113.8 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 54/101 (53%), Positives = 77/101 (76%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 420
Score = 55 (24.4 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 42 DYTKLLEYGLDKRIAGKLDDIFKTG 66
++ LL+ GL +++A KLD+I+ G
Sbjct: 26 NFQTLLDAGLPQKVAEKLDEIYVAG 50
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 309 (113.8 bits), Expect = 3.2e-30, Sum P(2) = 3.2e-30
Identities = 54/101 (53%), Positives = 77/101 (76%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 420
Score = 55 (24.4 bits), Expect = 3.2e-30, Sum P(2) = 3.2e-30
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 42 DYTKLLEYGLDKRIAGKLDDIFKTG 66
++ LL+ GL +++A KLD+I+ G
Sbjct: 26 NFQTLLDAGLPQKVAEKLDEIYVAG 50
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 309 (113.8 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 54/101 (53%), Positives = 77/101 (76%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 324 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 383
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 384 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 424
Score = 55 (24.4 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 42 DYTKLLEYGLDKRIAGKLDDIFKTG 66
++ LL+ GL +++A KLD+I+ G
Sbjct: 30 NFQTLLDAGLPQKVAEKLDEIYVAG 54
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 309 (113.8 bits), Expect = 3.7e-30, Sum P(2) = 3.7e-30
Identities = 54/101 (53%), Positives = 77/101 (76%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 335 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 394
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 395 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 435
Score = 55 (24.4 bits), Expect = 3.7e-30, Sum P(2) = 3.7e-30
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 42 DYTKLLEYGLDKRIAGKLDDIFKTG 66
++ LL+ GL +++A KLD+I+ G
Sbjct: 41 NFQTLLDAGLPQKVAEKLDEIYVAG 65
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 306 (112.8 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 53/101 (52%), Positives = 77/101 (76%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 380 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 420
Score = 55 (24.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 42 DYTKLLEYGLDKRIAGKLDDIFKTG 66
++ LL+ GL +++A KLD+I+ G
Sbjct: 26 NFQTLLDAGLPQKVAEKLDEIYVAG 50
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 67/128 (52%), Positives = 92/128 (71%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL
Sbjct: 134 LEYE-DHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 191
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AM+E+NG+ + G +E+ LAKP
Sbjct: 192 VTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 251
Query: 167 PSDKKKKE 174
P DKK+KE
Sbjct: 252 P-DKKRKE 258
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 332 (121.9 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 68/128 (53%), Positives = 92/128 (71%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL
Sbjct: 322 LEYE-DHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 379
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AMNE+NG+ + G +E+ LAKP
Sbjct: 380 VTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMNEMNGKEIEGEEIEIVLAKP 439
Query: 167 PSDKKKKE 174
P DKK+KE
Sbjct: 440 P-DKKRKE 446
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 298 (110.0 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 53/103 (51%), Positives = 77/103 (74%)
Query: 76 IIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVH 135
+ V+WADP E+PD E M+KVKVL+VRNL TEE L++ F Q+G++ERVK++KDYAF+H
Sbjct: 319 VTVEWADPIEDPDPEVMAKVKVLFVRNLASTVTEELLEKTFCQFGKLERVKKLKDYAFIH 378
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
FE+R A+ A+ EL+G+ + G +E+ AKPP K+K+ + R
Sbjct: 379 FEERDGAVKALAELHGKDLEGEPIEIVFAKPPDQKRKERKAQR 421
Score = 54 (24.1 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 32 EEKPSSERTPDYTKLLEYGLDKRIAGKLDDIFKTG 66
E + + + LL+ GL +++A KLD+I+ G
Sbjct: 17 ESSAAVTHSEHFQTLLDAGLPRKVAVKLDEIYIAG 51
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 327 (120.2 bits), Expect = 7.5e-29, P = 7.5e-29
Identities = 67/128 (52%), Positives = 92/128 (71%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL
Sbjct: 256 LEYE-DHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 313
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AM+E+NG+ + G +E+ LAKP
Sbjct: 314 VTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 373
Query: 167 PSDKKKKE 174
P DKK+KE
Sbjct: 374 P-DKKRKE 380
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 327 (120.2 bits), Expect = 7.7e-29, P = 7.7e-29
Identities = 67/128 (52%), Positives = 92/128 (71%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL
Sbjct: 294 LEYE-DHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 351
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AM+E+NG+ + G +E+ LAKP
Sbjct: 352 VTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 411
Query: 167 PSDKKKKE 174
P DKK+KE
Sbjct: 412 P-DKKRKE 418
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 327 (120.2 bits), Expect = 9.3e-29, P = 9.3e-29
Identities = 67/128 (52%), Positives = 92/128 (71%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL
Sbjct: 294 LEYE-DHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 351
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AM+E+NG+ + G +E+ LAKP
Sbjct: 352 VTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 411
Query: 167 PSDKKKKE 174
P DKK+KE
Sbjct: 412 P-DKKRKE 418
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 327 (120.2 bits), Expect = 9.3e-29, P = 9.3e-29
Identities = 67/128 (52%), Positives = 92/128 (71%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL
Sbjct: 294 LEYE-DHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 351
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AM+E+NG+ + G +E+ LAKP
Sbjct: 352 VTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 411
Query: 167 PSDKKKKE 174
P DKK+KE
Sbjct: 412 P-DKKRKE 418
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 327 (120.2 bits), Expect = 9.3e-29, P = 9.3e-29
Identities = 67/128 (52%), Positives = 92/128 (71%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL
Sbjct: 294 LEYE-DHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 351
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AM+E+NG+ + G +E+ LAKP
Sbjct: 352 VTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 411
Query: 167 PSDKKKKE 174
P DKK+KE
Sbjct: 412 P-DKKRKE 418
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 327 (120.2 bits), Expect = 9.3e-29, P = 9.3e-29
Identities = 67/128 (52%), Positives = 92/128 (71%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL
Sbjct: 294 LEYE-DHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 351
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AM+E+NG+ + G +E+ LAKP
Sbjct: 352 VTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 411
Query: 167 PSDKKKKE 174
P DKK+KE
Sbjct: 412 P-DKKRKE 418
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 327 (120.2 bits), Expect = 9.3e-29, P = 9.3e-29
Identities = 67/128 (52%), Positives = 92/128 (71%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL
Sbjct: 294 LEYE-DHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 351
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AM+E+NG+ + G +E+ LAKP
Sbjct: 352 VTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 411
Query: 167 PSDKKKKE 174
P DKK+KE
Sbjct: 412 P-DKKRKE 418
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 62/121 (51%), Positives = 86/121 (71%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP EEPD E M+KVKVL+VRNL
Sbjct: 263 LEYE-DHKSAAQARRRLMSGK-VKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 320
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F ++G++ERVK++KDYAFVHFEDR A+ AM+E+NG+ + G +E+ LAKP
Sbjct: 321 VTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 380
Query: 167 P 167
P
Sbjct: 381 P 381
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 315 (115.9 bits), Expect = 1.8e-27, P = 1.8e-27
Identities = 62/132 (46%), Positives = 90/132 (68%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP E+PD E M+KVKVL+VRNL
Sbjct: 290 LEYE-DHKTAAQARRRLMSGK-VKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANT 347
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L++AF Q+G++ERVK++KDYAF+HF++R A+ AM E+NG+ + G +E+ AKP
Sbjct: 348 VTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 407
Query: 167 PSDKKKKEEILR 178
P K+K+ + R
Sbjct: 408 PDQKRKERKAQR 419
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 306 (112.8 bits), Expect = 9.8e-27, P = 9.8e-27
Identities = 53/101 (52%), Positives = 77/101 (76%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 230 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 289
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 290 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 330
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 306 (112.8 bits), Expect = 9.8e-27, P = 9.8e-27
Identities = 53/101 (52%), Positives = 77/101 (76%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L+++F Q+G++ERVK++KDYAF+HF+
Sbjct: 230 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFD 289
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+R A+ AM E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 290 ERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 330
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 308 (113.5 bits), Expect = 1.4e-26, P = 1.4e-26
Identities = 63/132 (47%), Positives = 88/132 (66%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+WADP E+PD E M+KVKVL+VRNL
Sbjct: 355 LEYE-DHKTAAQARRRLMSGK-VKVWGNLVTVEWADPIEDPDPEVMAKVKVLFVRNLANS 412
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L++AF Q+G +ERVK++KDYAFVHF DR A+ A+ E+NG+ + G +E+ AKP
Sbjct: 413 VTEEILEKAFGQFGNLERVKKLKDYAFVHFNDRDGAVKALTEMNGKELEGEHIEIVFAKP 472
Query: 167 PSDKKKKEEILR 178
P K+K+ + R
Sbjct: 473 PDQKRKERKAQR 484
>UNIPROTKB|F1LM17 [details] [associations]
symbol:F1LM17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
Length = 440
Score = 280 (103.6 bits), Expect = 2.8e-24, P = 2.8e-24
Identities = 63/128 (49%), Positives = 88/128 (68%)
Query: 47 LEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQY 106
LEY D + A + +GK + G + V+ ADP EEPD E M+KVKVL+VRNL
Sbjct: 120 LEYE-DHKSAAQARLWLMSGKVVW--GNVVTVERADPVEEPDPEGMAKVKVLFVRNLATT 176
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
TEE L+++F Q+G +ERVK++ DYAFVHFEDR EA+ A++E+NG+ + G +E+ LA
Sbjct: 177 VTEEILEKSFSQFGELERVKKLTDYAFVHFEDR-EAVKAVDEMNGKEIEGEEIEIVLAML 235
Query: 167 PSDKKKKE 174
P D+K+KE
Sbjct: 236 P-DRKRKE 242
>UNIPROTKB|F1NZU2 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:AADN02002396 IPI:IPI00570859
Ensembl:ENSGALT00000025521 ArrayExpress:F1NZU2 Uniprot:F1NZU2
Length = 447
Score = 249 (92.7 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 45/94 (47%), Positives = 67/94 (71%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
+E E + VKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF++R A+
Sbjct: 212 KEAAQEAVKLVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVK 271
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
AM E+NG+ + G +E+ AKPP K+K+ + R
Sbjct: 272 AMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 305
Score = 52 (23.4 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 43 YTKLLEYGLDKRIAGKLDDIFKTG 66
+ LL+ GL ++A KLD+I+ G
Sbjct: 26 FQTLLDAGLPHKVAEKLDEIYVAG 49
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 275 (101.9 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 53/96 (55%), Positives = 74/96 (77%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP 308
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 275 (101.9 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 53/96 (55%), Positives = 74/96 (77%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP 308
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 275 (101.9 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 53/96 (55%), Positives = 74/96 (77%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP 308
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 275 (101.9 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 53/96 (55%), Positives = 74/96 (77%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGSVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP 308
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 275 (101.9 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 53/96 (55%), Positives = 74/96 (77%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP 308
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 275 (101.9 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 53/96 (55%), Positives = 74/96 (77%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP 308
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 275 (101.9 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 53/96 (55%), Positives = 74/96 (77%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP 308
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 275 (101.9 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 53/96 (55%), Positives = 74/96 (77%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKP 308
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 274 (101.5 bits), Expect = 2.8e-23, P = 2.8e-23
Identities = 55/104 (52%), Positives = 75/104 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P++E D ETM +V+VLYVRNL TEE L+ F Q G VERVK++ D
Sbjct: 197 GHTIQVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTD 256
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS-DKKKK 173
YAF+HF +R++A+TA+ +NG+ + GS +EV+LAKP S D K+
Sbjct: 257 YAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKPASKDGNKR 300
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 55/102 (53%), Positives = 74/102 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R++A+ AMN LNG + GS LEV+LAKP DK++
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPV-DKEQ 323
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 273 (101.2 bits), Expect = 4.2e-23, P = 4.2e-23
Identities = 53/96 (55%), Positives = 73/96 (76%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWADP++E D ETM +VKVLYVRNL TEE +K F ++ G VERVK+++D
Sbjct: 213 GHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKP 308
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 272 (100.8 bits), Expect = 7.3e-23, P = 7.3e-23
Identities = 54/96 (56%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TM+ VK+LYVRNL TEE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMATVKILYVRNLMLPTTEETIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++AI AMN LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSQREDAINAMNALNGKVIDGSPIEVTLAKP 303
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 271 (100.5 bits), Expect = 9.4e-23, P = 9.4e-23
Identities = 56/102 (54%), Positives = 74/102 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R++A+ AMN LNG + GS LEV+LAKP DK++
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPV-DKEQ 323
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 270 (100.1 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 56/102 (54%), Positives = 73/102 (71%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TEE +K +F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKRSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R++A+ AMN LNG + GS LEV+LAKP DK++
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPV-DKEQ 323
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 269 (99.8 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 55/102 (53%), Positives = 74/102 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 225 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 284
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R++A+ AMN LNG + GS LEV+LAKP DK++
Sbjct: 285 YAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKPV-DKEQ 325
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 269 (99.8 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 55/102 (53%), Positives = 74/102 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 225 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 284
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R++A+ AMN LNG + GS LEV+LAKP DK++
Sbjct: 285 YAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKPV-DKEQ 325
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 268 (99.4 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 55/102 (53%), Positives = 74/102 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 185 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 244
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R++A+ AMN LNG + GS LEV+LAKP DK++
Sbjct: 245 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPV-DKEQ 285
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 268 (99.4 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 55/102 (53%), Positives = 74/102 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R++A+ AMN LNG + GS LEV+LAKP DK++
Sbjct: 283 YAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKPV-DKEQ 323
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 268 (99.4 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 55/102 (53%), Positives = 74/102 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R++A+ AMN LNG + GS LEV+LAKP DK++
Sbjct: 283 YAFVHFASREDAVHAMNNLNGTELEGSCLEVTLAKPV-DKEQ 323
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 268 (99.4 bits), Expect = 2.0e-22, P = 2.0e-22
Identities = 55/102 (53%), Positives = 74/102 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K++F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R++A+ AMN LNG + GS LEV+LAKP DK++
Sbjct: 283 YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPV-DKEQ 323
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 266 (98.7 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 53/96 (55%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFE--QYGRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL TEE +++ F + G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTTEETIEKEFNNIKQGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFNKREDAVHAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 266 (98.7 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 56/102 (54%), Positives = 73/102 (71%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL TE+ +K+ F Q+ G VERVK+I+D
Sbjct: 223 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKVFGQFNPGCVERVKKIRD 282
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R++AI AMN LNG + GS LEV+LAKP DK++
Sbjct: 283 YAFVHFTTREDAIHAMNNLNGVELEGSCLEVTLAKPV-DKEQ 323
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 264 (98.0 bits), Expect = 5.4e-22, P = 5.4e-22
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 201 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 260
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 261 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 296
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 264 (98.0 bits), Expect = 5.4e-22, P = 5.4e-22
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 264 (98.0 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 264 (98.0 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 264 (98.0 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 264 (98.0 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 263 (97.6 bits), Expect = 5.6e-22, P = 5.6e-22
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 263 (97.6 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFSNREDAVEAMKALNGKMLDGSPIEVTLAKP 303
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 263 (97.6 bits), Expect = 7.1e-22, P = 7.1e-22
Identities = 52/96 (54%), Positives = 70/96 (72%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ E D +TMS VK+LYVRNL +EE +++ F G VERVK+I+D
Sbjct: 208 GHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 267
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM LNG+ + GS +EV+LAKP
Sbjct: 268 YAFVHFTNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 229 (85.7 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 40/66 (60%), Positives = 55/66 (83%)
Query: 78 VDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFE 137
V+WADP E+PD E M+KVKVL+VRNL TEE L++AF Q+G++ERVK++KDYAF+HF+
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFD 379
Query: 138 DRQEAI 143
+R A+
Sbjct: 380 ERDGAV 385
Score = 55 (24.4 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 42 DYTKLLEYGLDKRIAGKLDDIFKTG 66
++ LL+ GL +++A KLD+I+ G
Sbjct: 26 NFQTLLDAGLPQKVAEKLDEIYVAG 50
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 259 (96.2 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 53/102 (51%), Positives = 72/102 (70%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQY--GRVERVKRIKD 130
G I VDWA+P+ + D + M VK+LYVRNL +EE L++ F Q+ G VERVK+I+D
Sbjct: 234 GHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETSEEILRQTFGQFNPGCVERVKKIRD 293
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
YAFVHF R +A+ AM+ LNG + GS +EV+LAKP DK++
Sbjct: 294 YAFVHFASRDDAVVAMDNLNGTEIEGSRIEVTLAKPV-DKEQ 334
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 252 (93.8 bits), Expect = 3.1e-21, P = 3.1e-21
Identities = 49/96 (51%), Positives = 72/96 (75%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRIKD 130
G + VDWA P++E D ETM +VKVLYVRNL TE+ +K F ++ VERVK+++D
Sbjct: 142 GRAVQVDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTIKAEFNKFKPRVVERVKKLRD 201
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 202 YAFVHFYNREDAVAAMSIMNGKCIDGASIEVTLAKP 237
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 252 (93.8 bits), Expect = 5.5e-21, P = 5.5e-21
Identities = 49/96 (51%), Positives = 72/96 (75%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGR--VERVKRIKD 130
G + VDWA P++E D ETM +VKVLYVRNL TE+ +K F ++ VERVK+++D
Sbjct: 213 GRAVQVDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTIKAEFNKFKPRVVERVKKLRD 272
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
YAFVHF +R++A+ AM+ +NG+ + G+++EV+LAKP
Sbjct: 273 YAFVHFYNREDAVAAMSIMNGKCIDGASIEVTLAKP 308
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 177 (67.4 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 38/101 (37%), Positives = 62/101 (61%)
Query: 78 VDWADPQEEPD-TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KRIK-D 130
V WADP+ P+ + ++VK LYV+N+ + + E+LKE F+++G V ++ K K D
Sbjct: 273 VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD 332
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ FVH+ +R A+ A+ + V G LEV LAKP +++K
Sbjct: 333 FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 155 (59.6 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAIT 144
EE + KV +V NL+ CT E L+E F+ +G+V ++K YAFVH E++++A+
Sbjct: 73 EESRGRPLHSTKV-FVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQ 131
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKK 171
A+ L+G + G L V L+K K+
Sbjct: 132 AIEALHGTSFKGRPLSVELSKVQPSKQ 158
Score = 113 (44.8 bits), Expect = 0.00056, P = 0.00056
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V NL T+E+L FE YG+V ++ +AFVH + A A+ ELNG+ G
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREFKGR 68
Query: 158 TL--EVSLAKP 166
L E S +P
Sbjct: 69 NLVVEESRGRP 79
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 150 (57.9 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 34/111 (30%), Positives = 59/111 (53%)
Query: 78 VDWADPQEEPDTETM-SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRI 128
V WA+ + ++ S+VK LY++NL + T+E+LK FE +G++ +V K
Sbjct: 249 VSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKED 308
Query: 129 KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRN 179
Y FVH+ +R + A+ + G L+ +LAKP +D+K ++N
Sbjct: 309 SRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQN 359
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 131 (51.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 41/143 (28%), Positives = 66/143 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAG 156
VH E ++A+ A+ L+ G
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQG 138
Score = 128 (50.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 131 (51.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 41/143 (28%), Positives = 66/143 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAG 156
VH E ++A+ A+ L+ G
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQG 138
Score = 128 (50.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 131 (51.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 41/143 (28%), Positives = 66/143 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAG 156
VH E ++A+ A+ L+ G
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQG 138
Score = 128 (50.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 128 (50.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
Score = 128 (50.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 40/137 (29%), Positives = 65/137 (47%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELN 150
VH E ++A+ A+ L+
Sbjct: 116 VHMERAEDAVEAIRGLD 132
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 128 (50.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
Score = 128 (50.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 40/137 (29%), Positives = 65/137 (47%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELN 150
VH E ++A+ A+ L+
Sbjct: 116 VHMERAEDAVEAIRGLD 132
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 140 (54.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 142 (55.0 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 51/168 (30%), Positives = 82/168 (48%)
Query: 13 IVIFV-NVRKFTMAESSREAEEKPSSERTPDYTKLLEYG---LDKRIAGKLDDIFKTGKH 68
+ IFV NV T + R EK + D K YG +D+ A + + KH
Sbjct: 2 VKIFVGNVASATTEDELRALFEKYGAVSDCDILK--NYGFVHMDEEEAAQ-KAVSALHKH 58
Query: 69 LLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI 128
++ G I V++A T+ + K+ YV N+ + K+KE F+ +G+V +
Sbjct: 59 EVN-GSRITVEYAT------TKVRNATKI-YVGNVPEGVAAAKIKELFQPFGKVVECDIV 110
Query: 129 KDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP-PSDKKKKEE 175
K+YAFVH + EA+ A+ +LN V G + VSL++ PS + E+
Sbjct: 111 KNYAFVHMQRENEALDAIAKLNHSKVDGQKIFVSLSRSNPSRNGRGED 158
>UNIPROTKB|E2RS43 [details] [associations]
symbol:RBM14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016575 "histone deacetylation"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003676
GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
GeneTree:ENSGT00390000020883 CTD:10432 KO:K13189 OMA:SLTSYGA
EMBL:AAEX03011624 EMBL:AAEX03011625 RefSeq:XP_852283.2
ProteinModelPortal:E2RS43 Ensembl:ENSCAFT00000019697 GeneID:610639
KEGG:cfa:610639 NextBio:20896193 Uniprot:E2RS43
Length = 669
Score = 145 (56.1 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 38/109 (34%), Positives = 60/109 (55%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ P ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPR--P----LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>UNIPROTKB|Q96PK6 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IPI] [GO:0016592 "mediator complex"
evidence=NAS] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=NAS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0016575 "histone deacetylation" evidence=IPI] [GO:0009725
"response to hormone stimulus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=NAS]
[GO:0042921 "glucocorticoid receptor signaling pathway"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006310
"DNA recombination" evidence=NAS] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0005667
"transcription factor complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0042921 GO:GO:0000166 GO:GO:0006260 GO:GO:0006281
EMBL:CH471076 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0030674
GO:GO:0003723 GO:GO:0005667 GO:GO:0006310 GO:GO:0009725
GO:GO:0030529 GO:GO:0030520 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 EMBL:AP001157 GO:GO:0016592 GO:GO:0001104 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
EMBL:AF315632 EMBL:AF315633 EMBL:AF080561 EMBL:AK021768
EMBL:AK222830 EMBL:BC000488 EMBL:BE885635 EMBL:CR749306
IPI:IPI00013174 IPI:IPI00644837 IPI:IPI01009009
RefSeq:NP_001185765.1 RefSeq:NP_001185775.1 RefSeq:NP_006319.1
UniGene:Hs.533712 PDB:2DNP PDBsum:2DNP ProteinModelPortal:Q96PK6
SMR:Q96PK6 IntAct:Q96PK6 MINT:MINT-2798129 STRING:Q96PK6
PhosphoSite:Q96PK6 DMDM:73913750 PaxDb:Q96PK6 PRIDE:Q96PK6
DNASU:10432 Ensembl:ENST00000310137 Ensembl:ENST00000393979
Ensembl:ENST00000500635 GeneID:100526737 GeneID:10432
KEGG:hsa:10432 UCSC:uc001oit.3 UCSC:uc009yri.3 CTD:100526737
GeneCards:GC11P066384 HGNC:HGNC:14219 HPA:HPA006628 MIM:612409
neXtProt:NX_Q96PK6 PharmGKB:PA34263 InParanoid:Q96PK6 OMA:SLTSYGA
PhylomeDB:Q96PK6 ChiTaRS:RBM14 ChiTaRS:RBM14-RBM4
EvolutionaryTrace:Q96PK6 GenomeRNAi:10432 NextBio:39542
ArrayExpress:Q96PK6 Bgee:Q96PK6 Genevestigator:Q96PK6
GermOnline:ENSG00000173959 Uniprot:Q96PK6
Length = 669
Score = 145 (56.1 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 38/109 (34%), Positives = 60/109 (55%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG L I H L G ++V+ + P+ P ++ K+ +V N++ CT ++L+
Sbjct: 46 AGALRAIEALHGHELRPGRALVVEMSRPR--P----LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 141 (54.7 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 141 (54.7 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 141 (54.7 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 141 (54.7 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 141 (54.7 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 141 (54.7 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 141 (54.7 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 141 (54.7 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 141 (54.7 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
>UNIPROTKB|E5RG67 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974428
ProteinModelPortal:E5RG67 SMR:E5RG67 Ensembl:ENST00000477044
ArrayExpress:E5RG67 Bgee:E5RG67 Uniprot:E5RG67
Length = 161
Score = 123 (48.4 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 123 (48.4 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE+YG V +KDYAF
Sbjct: 63 VNINVEASKNKSKTSTK-------LHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Score = 128 (50.1 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 121 (47.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 121 (47.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 140 (54.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 43/154 (27%), Positives = 74/154 (48%)
Query: 13 IVIFV-NVRKFTMAESSREAEEKPSSERTPDYTKLLEY-GLDKRIAGKLDDIFKTGKHLL 70
+ IFV N+ T AE R + D K + +D + + D+ + H +
Sbjct: 2 VKIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSK--SEADEAIQNLHHYM 59
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
G + V+ + + +P T T L+V N++ CT ++L+ FE+YG V +KD
Sbjct: 60 LNGMAMNVEMS--KGKPKTSTK-----LHVGNISSSCTNQELRAKFEEYGPVVECDIVKD 112
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
YAFVH E ++A+ A++ L+ G + V L+
Sbjct: 113 YAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLS 146
Score = 116 (45.9 bits), Expect = 0.00016, P = 0.00016
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV 154
VK+ +V NL+ T E+++ F QYG++ +K++ FVH + + EA A+ L+ +
Sbjct: 2 VKI-FVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYML 60
Query: 155 AGSTL--EVSLAKPPSDKK 171
G + E+S KP + K
Sbjct: 61 NGMAMNVEMSKGKPKTSTK 79
>UNIPROTKB|F1MI47 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
GO:GO:0016575 GeneTree:ENSGT00390000020883 IPI:IPI00690613
UniGene:Bt.91172 OMA:SLTSYGA EMBL:DAAA02063594
Ensembl:ENSBTAT00000001619 Uniprot:F1MI47
Length = 669
Score = 142 (55.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 37/109 (33%), Positives = 60/109 (55%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ P ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPR--P----LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>UNIPROTKB|Q5EA36 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 EMBL:BT020733 IPI:IPI00690613
RefSeq:NP_001014901.1 UniGene:Bt.91172 ProteinModelPortal:Q5EA36
SMR:Q5EA36 STRING:Q5EA36 PRIDE:Q5EA36 GeneID:511512 KEGG:bta:511512
CTD:10432 HOGENOM:HOG000065673 HOVERGEN:HBG053180 InParanoid:Q5EA36
KO:K13189 OrthoDB:EOG45X7XS NextBio:20869968 Uniprot:Q5EA36
Length = 669
Score = 142 (55.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 37/109 (33%), Positives = 60/109 (55%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ P ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPR--P----LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>MGI|MGI:1929092 [details] [associations]
symbol:Rbm14 "RNA binding motif protein 14" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016575 "histone deacetylation" evidence=ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1929092 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 GeneTree:ENSGT00390000020883 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
OMA:SLTSYGA ChiTaRS:RBM14 EMBL:AK004928 EMBL:AK088201 EMBL:AK167503
EMBL:BC010294 IPI:IPI00404707 IPI:IPI00649362 RefSeq:NP_063922.2
UniGene:Mm.276338 UniGene:Mm.441002 ProteinModelPortal:Q8C2Q3
SMR:Q8C2Q3 DIP:DIP-58946N IntAct:Q8C2Q3 STRING:Q8C2Q3
PhosphoSite:Q8C2Q3 PaxDb:Q8C2Q3 PRIDE:Q8C2Q3
Ensembl:ENSMUST00000006625 GeneID:56275 KEGG:mmu:56275
UCSC:uc008gay.1 UCSC:uc008gaz.1 InParanoid:Q8C2Q3 NextBio:312164
Bgee:Q8C2Q3 CleanEx:MM_RBM14 Genevestigator:Q8C2Q3
GermOnline:ENSMUSG00000006456 Uniprot:Q8C2Q3
Length = 669
Score = 142 (55.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 37/109 (33%), Positives = 60/109 (55%)
Query: 56 AGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEA 115
AG + I H L G ++V+ + P+ P ++ K+ +V N++ CT ++L+
Sbjct: 46 AGAVRAIEALHGHELRPGRALVVEMSRPR--P----LNTWKI-FVGNVSAACTSQELRSL 98
Query: 116 FEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
FE+ GRV +KDYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 99 FERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>GENEDB_PFALCIPARUM|PFL1200c [details] [associations]
symbol:PFL1200c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 120 (47.3 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 32/91 (35%), Positives = 52/91 (57%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR-----IKDYAFVHFEDRQEAITAMNELN 150
++LYVRNL + ++L + F +YG V ++++ K +FV ++D +A A++ L+
Sbjct: 14 RILYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNALDHLS 73
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKE--EILRN 179
G VAG L V P +KKKE E L+N
Sbjct: 74 GFNVAGRYLVVLYYDPVKAQKKKEIQEKLKN 104
>UNIPROTKB|Q8I5G8 [details] [associations]
symbol:PFL1200c "Splicing factor 3b subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 120 (47.3 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 32/91 (35%), Positives = 52/91 (57%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR-----IKDYAFVHFEDRQEAITAMNELN 150
++LYVRNL + ++L + F +YG V ++++ K +FV ++D +A A++ L+
Sbjct: 14 RILYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNALDHLS 73
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKE--EILRN 179
G VAG L V P +KKKE E L+N
Sbjct: 74 GFNVAGRYLVVLYYDPVKAQKKKEIQEKLKN 104
>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
symbol:rbm4.2 "RNA binding motif protein 4.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
Length = 385
Score = 135 (52.6 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+V N++ CT ++L+ FE+YG V +KDYAFVH E +A+ A++ L T G
Sbjct: 80 LHVSNISSGCTNQELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLENTTFQGK 139
Query: 158 TLEVSLA 164
++V L+
Sbjct: 140 LIKVQLS 146
Score = 111 (44.1 bits), Expect = 0.00055, P = 0.00055
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV 154
VK+ ++ NL+ T + L+ F ++G V+ +K+Y FVH + ++EA A+ +L+ +
Sbjct: 2 VKI-FIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYEL 60
Query: 155 AGSTLEVSLAK 165
G + V L+K
Sbjct: 61 KGQAINVELSK 71
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
+ LYV NL++ TE + + F Q G + K I + Y FV F + ++A A+ +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKK 91
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 99 YVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNELNGQ 152
YV NL++ TE + + F Q G + K I D Y FV F + + A A+ +NG+
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGR 61
Query: 153 TVAGSTLEVSLAKPPSDKKK 172
+ G ++V+ A PS +KK
Sbjct: 62 KIMGKEVKVNWATTPSSQKK 81
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 130 (50.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 43/151 (28%), Positives = 68/151 (45%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
I V+ + + + T+ L+V N++ CT +L+ FE+YG V +KDYAF
Sbjct: 63 VCINVEASKNKSKASTK-------LHVGNISPTCTNLELRAKFEEYGPVIECDIVKDYAF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
VH E ++A+ A+ L+ G + V L+
Sbjct: 116 VHMERAEDAVEAIRGLDNTEFQGKRMRVQLS 146
Score = 128 (50.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 CINVEASKNKSKASTK 79
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 121 (47.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YA 132
+ P + +TE SK ++ V L Q T+E+LK F G +E K ++D Y
Sbjct: 26 SSPVDSGNTED-SKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 127 (49.8 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 33/103 (32%), Positives = 59/103 (57%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVH 135
P+ + + E + K LYV+NL++ TE+ L+E FE YGR+ K + D + FV
Sbjct: 190 PRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVA 249
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
+E+ Q A+ A+ L+G+ + G + +A+ S ++++EI R
Sbjct: 250 YENPQSALAAVIGLHGKQL-GDNKFLYVARALSKAERQQEINR 291
>UNIPROTKB|F1RUT1 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
Length = 356
Score = 128 (50.1 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKTSTK 79
>FB|FBgn0033378 [details] [associations]
symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
dorsal/ventral axis specification" evidence=IMP] [GO:0007314
"oocyte anterior/posterior axis specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
nucleus migration involved in oocyte dorsal/ventral axis
specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007317 "regulation of pole plasm oskar mRNA localization"
evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
[GO:0046595 "establishment of pole plasm mRNA localization"
evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IMP]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
Length = 165
Score = 116 (45.9 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 29/104 (27%), Positives = 53/104 (50%)
Query: 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KRI---KDYAF 133
D + EP + + +L+V ++ + E++++E F YG ++ + +R K YA
Sbjct: 59 DDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYAL 118
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVS--LAKPPSDKKKKEE 175
V +E ++A+ A LNG + G T++V K P KK E+
Sbjct: 119 VEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEK 162
>UNIPROTKB|F1RUT8 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 GeneTree:ENSGT00390000020883 OMA:VYYNDAY
Ensembl:ENSSSCT00000014136 Uniprot:F1RUT8
Length = 359
Score = 128 (50.1 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + TE++++ FEQYG+V IK+Y FVH ED+ A A+ L+ + G
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGV 63
Query: 158 TLEVSLAKPPSDKKKK 173
+ V +K S K
Sbjct: 64 NINVEASKNKSKASTK 79
Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 42/151 (27%), Positives = 66/151 (43%)
Query: 21 KFTMAESSREAEEKPSSERTPDYTKLLEYGLDKR-----IAGKL--DDIFKTGKHLLSRG 73
K + REA E+ Y K+LE + K I K +D + H G
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAF 133
+I V+ + + + T+ L+V N++ CT ++L+ FE YG + R KDY F
Sbjct: 63 VNINVEASKNKSKASTK-------LHVGNISPTCTNQELRAKFEAYGGLLRCFLKKDYIF 115
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+H E Q A + L+G G + V L+
Sbjct: 116 IHLEREQPACLRVPGLDGTQAQGKRMHVQLS 146
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 131 (51.2 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 39/143 (27%), Positives = 65/143 (45%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHF 136
++ + + ++KV +YV+N+ TEE+L++ F Q G + K + K + FV F
Sbjct: 292 EKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCF 351
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNXXXXXXXXXXXXXXXXX 196
+EAI A+ +GQ G L V++A+ D+K + ++
Sbjct: 352 STPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQV--QFGNRVEARKSSSSASVN 409
Query: 197 SGAHAPLL---TGPPMPRGSVPL 216
G +APL T P M S PL
Sbjct: 410 PGTYAPLYYTNTHPGMVYQSYPL 432
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 123 (48.4 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
Score = 107 (42.7 bits), Expect = 0.00046, P = 0.00046
Identities = 34/122 (27%), Positives = 60/122 (49%)
Query: 73 GCDIIVDWAD-PQ-EEPDTETMSKVKV--------LYVRNLTQYCTEEKLKEAFEQYGRV 122
G ++ V+WA P ++ DT + + V ++V +L+ T E +K AF +GR+
Sbjct: 73 GKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRI 132
Query: 123 ERVKRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKK 172
+ +KD Y FV F ++ +A A+ ++ GQ + G + + A KPP+ K
Sbjct: 133 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 192
Query: 173 KE 174
E
Sbjct: 193 YE 194
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 128 (50.1 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 31/103 (30%), Positives = 57/103 (55%)
Query: 82 DPQEEPDTETMS-KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYA 132
D +++ D+E+ K K L++ L+ Y +E+ L+ AFE +G + VK R K YA
Sbjct: 267 DSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 326
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEE 175
F+ + + A TA+ E+NG+ + G + V +AK ++ + +
Sbjct: 327 FLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKPFRQNRSQ 369
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 128 (50.1 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 74 CDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--- 130
C ++ + P E +TE SK ++ V L Q T+E+LK F G +E K ++D
Sbjct: 46 CPNTINCSSPVESNNTED-SKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 103
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
Y FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 104 EGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 147
>TAIR|locus:2177033 [details] [associations]
symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
Length = 124
Score = 108 (43.1 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KRIKDYAFVHFEDRQEAITAMNELN 150
+VLYVRNL T E++ + F +YG + ++ K K AFV +ED +A A++ L+
Sbjct: 19 RVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLS 78
Query: 151 GQTVAGSTLEV------SLAKPPSDKKKKEEILR 178
G VA L V ++K KK ++EI +
Sbjct: 79 GFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITK 112
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 123 (48.4 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGALLDGRELRVQMARYGRPP 96
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 127 (49.8 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
+ G + I + + P + +TE SK ++ V L Q T+E+LK F G +E K ++D
Sbjct: 44 AHGSNAINNCSSPIDSGNTED-SKTNLI-VNYLPQSMTQEELKSLFGSIGEIESCKLVRD 101
Query: 131 --------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
Y FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 102 KITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 147
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 107 (42.7 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
+Y+ L+ E+ ++ F YGR+ + Y FV FED ++A A+ ELNG+ + G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGE 63
Query: 158 TLEVSLAKPP 167
+ V A+ P
Sbjct: 64 RVIVEHARGP 73
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 107 (42.7 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 102 NLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNELNGQT 153
N+ TEE+LK+ F + G V + + D Y F ++D++ A++AM LNG+
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 154 VAGSTLEVSLAKPPSDKKKKEEI 176
+G L V A + +K KEE+
Sbjct: 63 FSGRALRVDNA---ASEKNKEEL 82
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 107 (42.7 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L+V+ ++ TEE L +AF QYG+V +V I D +A+V F ++EA A+ EL
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 150 NGQTVAGSTLEVSLAK-----PPSDK 170
N Q V G + + K PP K
Sbjct: 83 NAQLVDGRVVILDTTKAAKHNPPDTK 108
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 121 (47.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 129 (50.5 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA-------FVHFEDRQEAITAMNELN 150
LYV+NL T+EKL+E F ++G + K ++D + FV F EA +NE+N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK 173
G+ V G L V+LA+ +++ K
Sbjct: 390 GKMVGGKPLYVALAQRKEERRAK 412
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 121 (47.7 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 121 (47.7 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 121 (47.7 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 121 (47.7 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 121 (47.7 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 121 (47.7 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 121 (47.7 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 121 (47.7 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD E M+ +KV NLT + + L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVEGMTSLKV---DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 123 (48.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKK 85
Score = 118 (46.6 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 32/112 (28%), Positives = 55/112 (49%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-- 130
G ++ V+WA +T + V +V +L+ T E +K AF +GR+ + +KD
Sbjct: 69 GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 127
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
Y FV F ++ +A A+ ++ GQ + G + + A KPP+ K E
Sbjct: 128 TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 179
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 45/150 (30%), Positives = 74/150 (49%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S ER D K ++ K + GK + + K + R ++ + Q + D T +V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-ERQTELKRTFE--QMKQDRITRYQV 293
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LYV+NL +E+L++AF +G + K R K + FV F +EA A+ E+
Sbjct: 294 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKKEEILRN 179
NG+ VA L V+LA+ K++++ L N
Sbjct: 354 NGRIVATKPLYVALAQR---KEERQAYLTN 380
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/106 (30%), Positives = 55/106 (51%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYA 132
AD +E S ++ ++V N+ TEEKLKE F + G V +K + K +
Sbjct: 2 ADKAQEQSIMDKS-MRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFG 60
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILR 178
F ++D++ A++AM LNG + G TL V A + + +++L+
Sbjct: 61 FCEYKDQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQ 106
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 123 (48.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
Score = 118 (46.6 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 32/112 (28%), Positives = 55/112 (49%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-- 130
G ++ V+WA +T + V +V +L+ T E +K AF +GR+ + +KD
Sbjct: 73 GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 131
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
Y FV F ++ +A A+ ++ GQ + G + + A KPP+ K E
Sbjct: 132 TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 40/142 (28%), Positives = 69/142 (48%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K I+GK+ + + K + R ++ + ++E + V
Sbjct: 139 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQG-V 196
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 197 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 255
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 256 NGRIVGSKPLYVALAQRKEERK 277
Score = 115 (45.5 bits), Expect = 0.00032, P = 0.00032
Identities = 31/109 (28%), Positives = 59/109 (54%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E LKE F Q+G+ VK ++D + F
Sbjct: 78 RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 137
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ ++G + V A+ ++ K+K E L+
Sbjct: 138 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 186
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 120 (47.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFED 138
PD + M+ +KV NLT + E L+ FE+YGRV V K + +AFV F D
Sbjct: 8 PDVDGMTSLKV---DNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAK---PP 167
+++A AM+ ++G + G L V +A+ PP
Sbjct: 65 KRDAEDAMDAMDGAILDGRELRVQMARYGRPP 96
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 37/115 (32%), Positives = 63/115 (54%)
Query: 69 LLSRGCDIIVDWA-DP-QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK 126
LL R ++ V+WA +P Q++ +T V +V +L+ +KL+EAF+ +G V K
Sbjct: 109 LLDR--EMKVNWAVEPGQQQSKIDTTRHFHV-FVGDLSSEVDNQKLREAFQPFGDVSDAK 165
Query: 127 RIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA-KPPSDKKK 172
I+D Y FV + R+EA A+ ++NGQ + T+ + A + P D++K
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK 220
Score = 110 (43.8 bits), Expect = 0.00079, P = 0.00079
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKDYAFVHFEDRQEAITAMNELNGQTVA 155
+YV N+ TE+++++ F +GR+ V+ +++ YAFV F+++ A A+ ++N Q V
Sbjct: 243 VYVGNIASL-TEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVG 301
Query: 156 GSTLEVSLAK 165
G + S K
Sbjct: 302 GQLVRCSWGK 311
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 40/142 (28%), Positives = 69/142 (48%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K I+GK+ + + K + R ++ + ++E + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQG-V 294
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 295 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 354 NGRIVGSKPLYVALAQRKEERK 375
Score = 115 (45.5 bits), Expect = 0.00038, P = 0.00038
Identities = 31/109 (28%), Positives = 59/109 (54%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E LKE F Q+G+ VK ++D + F
Sbjct: 176 RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ ++G + V A+ ++ K+K E L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 40/142 (28%), Positives = 69/142 (48%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K I+GK+ + + K + R ++ + ++E + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQG-V 294
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 295 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 354 NGRIVGSKPLYVALAQRKEERK 375
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 31/109 (28%), Positives = 59/109 (54%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E LKE F Q+G+ VK ++D + F
Sbjct: 176 RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 235
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ ++G + V A+ ++ K+K E L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEAITAMNELNGQTV 154
+YV NL + +L+ AF YG + V + +AFV FED ++A A+ EL+G+T+
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 155 AGSTLEVSLA 164
G + V L+
Sbjct: 72 CGCRVRVELS 81
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 126 (49.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 40/142 (28%), Positives = 69/142 (48%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K I+GK+ + + K + R ++ + ++E + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQG-V 294
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 295 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 354 NGRIVGSKPLYVALAQRKEERK 375
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 31/109 (28%), Positives = 59/109 (54%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E LKE F Q+G+ VK ++D + F
Sbjct: 176 RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ ++G + V A+ ++ K+K E L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 126 (49.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 40/142 (28%), Positives = 69/142 (48%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K I+GK+ + + K + R ++ + ++E + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQG-V 294
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 295 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 354 NGRIVGSKPLYVALAQRKEERK 375
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 31/109 (28%), Positives = 59/109 (54%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E LKE F Q+G+ VK ++D + F
Sbjct: 176 RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ ++G + V A+ ++ K+K E L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 123 (48.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
Score = 118 (46.6 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 32/112 (28%), Positives = 55/112 (49%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-- 130
G ++ V+WA +T + V +V +L+ T E +K AF +GR+ + +KD
Sbjct: 73 GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 131
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
Y FV F ++ +A A+ ++ GQ + G + + A KPP+ K E
Sbjct: 132 TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 85 EEPDTETMSKVKV--LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVH 135
E+ E M K + LYV+NL + ++ LK+ FE YG + K R K + FV
Sbjct: 304 EQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVC 363
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
FE +EA +A+ E+N + V L V++A+ D++
Sbjct: 364 FEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRR 399
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L+V L+ E+ L++ F +YG++ V +KD + FV FE+ +A AM +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 150 NGQTVAGSTLEVSLAKPPSDKKKK 173
NG++V G + V A SD + +
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 123 (48.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
+Y++NL + +EKLKE F +G + R K + K + V F +EA A+NE+NG
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNEMNG 363
Query: 152 QTVAGSTLEVSLAK 165
+ V TL V+L +
Sbjct: 364 RVVGSKTLHVTLGQ 377
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 123 (48.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKK 85
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 123 (48.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 123 (48.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 123 (48.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 126 (49.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 40/142 (28%), Positives = 69/142 (48%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K I+GK+ + + K + R ++ + ++E + V
Sbjct: 277 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQG-V 334
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 335 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 393
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 394 NGRIVGSKPLYVALAQRKEERK 415
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 31/109 (28%), Positives = 59/109 (54%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E LKE F Q+G+ VK ++D + F
Sbjct: 216 RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGF 275
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ ++G + V A+ ++ K+K E L+
Sbjct: 276 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 324
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 122 (48.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A +A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAASALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
Score = 118 (46.6 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 32/112 (28%), Positives = 55/112 (49%)
Query: 73 GCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-- 130
G ++ V+WA +T + V +V +L+ T E +K AF +GR+ + +KD
Sbjct: 73 GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 131
Query: 131 ------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
Y FV F ++ +A A+ ++ GQ + G + + A KPP+ K E
Sbjct: 132 TGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 125 (49.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K I GK+ + + K + R ++ + ++E + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQG-V 294
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 295 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 354 NGRIVGSKPLYVALAQRKEERK 375
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 31/109 (28%), Positives = 58/109 (53%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E LKE F Q+G+ VK ++D + F
Sbjct: 176 RKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGF 235
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ + G + V A+ ++ K+K E L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLK 284
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 108 (43.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 34/97 (35%), Positives = 48/97 (49%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDR 139
D E S K LYV NL E +KE F ++G V V+ +KD + FV
Sbjct: 56 DEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAAS 115
Query: 140 QEAITAMNELNGQTVAGSTLEVSLAKPP-SDKKKKEE 175
Q A TA++ LN + TL+V +A P SD++ E+
Sbjct: 116 Q-AQTAIDALNEKEYMQRTLKVRIANDPKSDEEMAEQ 151
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 108 (43.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 34/97 (35%), Positives = 48/97 (49%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDR 139
D E S K LYV NL E +KE F ++G V V+ +KD + FV
Sbjct: 56 DEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAAS 115
Query: 140 QEAITAMNELNGQTVAGSTLEVSLAKPP-SDKKKKEE 175
Q A TA++ LN + TL+V +A P SD++ E+
Sbjct: 116 Q-AQTAIDALNEKEYMQRTLKVRIANDPKSDEEMAEQ 151
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 121 (47.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YA 132
+ P + +TE SK ++ V L Q T+E+LK F G +E K ++D Y
Sbjct: 26 SSPVDSGNTED-SKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>FB|FBgn0011640 [details] [associations]
symbol:lark "lark" species:7227 "Drosophila melanogaster"
[GO:0009790 "embryo development" evidence=IMP] [GO:0008062
"eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
[GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
"cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
Uniprot:Q94901
Length = 352
Score = 121 (47.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 15 IFV-NVRKFTMAESSREAEEKPSSERTPDYTKLLEYG---LDKRIAGKLDDIFKTGKHLL 70
+F+ N+ + T A R EK + D K YG ++ G+ D I + L
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVK--NYGFVHMETEQQGR-DAIQNLNGYTL 65
Query: 71 SRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD 130
+ I V+ A + P+T T +K+ +V NLT +++E F++YG V +++
Sbjct: 66 NEFA-IKVEAAKSRRAPNTPT-TKI---FVGNLTDKTRAPEVRELFQKYGTVVECDIVRN 120
Query: 131 YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
Y FVH + + A+ ELNG+ V G L+V ++
Sbjct: 121 YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154
Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L++ NL + +L+ FE+YG V +K+Y FVH E Q+ A+ LNG T+
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEF 68
Query: 158 TLEVSLAK 165
++V AK
Sbjct: 69 AIKVEAAK 76
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 121 (47.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YA 132
+ P + +TE SK ++ V L Q T+E+LK F G +E K ++D Y
Sbjct: 26 SSPVDSGNTED-SKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 121 (47.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YA 132
+ P + +TE SK ++ V L Q T+E+LK F G +E K ++D Y
Sbjct: 26 SSPVDSGNTED-SKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 118 (46.6 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 23 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 82
Query: 152 QTVAGSTLEVSLAKPPSDKK 171
+ V L V+LA+ ++K
Sbjct: 83 RIVGSKPLYVALAQRKEERK 102
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 116 (45.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFV 134
P +P + ++ ++V N+ TEE+LK+ F + G V + + D Y F
Sbjct: 5 PVRDPAVDR--SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFC 62
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
++D++ A++AM LNG+ +G L V A + +K KEE+
Sbjct: 63 EYQDQETALSAMRNLNGREFSGRALRVDNA---ASEKNKEEL 101
Score = 46 (21.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 206 GP-PMPRGSVPLQAALSSTRMG 226
GP PM RG VP+Q ++ + G
Sbjct: 288 GPVPMERGQVPMQDPRAAMQRG 309
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 101 (40.6 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 26/92 (28%), Positives = 51/92 (55%)
Query: 91 TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 142
TMS+ K+ YV +L+ T ++L+ F QYG +E K I D +AF+ + + A
Sbjct: 14 TMSQNKI-YVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAA 72
Query: 143 ITAMNELNGQTVAGSTLEVSLAKPPSDKKKKE 174
A+++ NG + G + V++A+ + ++++
Sbjct: 73 QEAVSKANGIDLQGRKIRVNIARENTGDRRRD 104
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 101 (40.6 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 26/92 (28%), Positives = 51/92 (55%)
Query: 91 TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEA 142
TMS+ K+ YV +L+ T ++L+ F QYG +E K I D +AF+ + + A
Sbjct: 14 TMSQNKI-YVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAA 72
Query: 143 ITAMNELNGQTVAGSTLEVSLAKPPSDKKKKE 174
A+++ NG + G + V++A+ + ++++
Sbjct: 73 QEAVSKANGIDLQGRKIRVNIARENTGDRRRD 104
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 115 (45.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 31/109 (28%), Positives = 59/109 (54%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E LKE F Q+G+ VK ++D + F
Sbjct: 89 RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGF 148
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ ++G + V A+ ++ K+K E L+
Sbjct: 149 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 197
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 121 (47.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 121 (47.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YA 132
+ P + +TE SK ++ V L Q T+E+LK F G +E K ++D Y
Sbjct: 54 SSPVDSGNTED-SKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 111
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 112 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 147
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 121 (47.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YA 132
+ P + +TE SK ++ V L Q T+E+LK F G +E K ++D Y
Sbjct: 55 SSPVDSGNTED-SKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 112
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 113 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 148
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 121 (47.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YA 132
+ P + +TE SK ++ V L Q T+E+LK F G +E K ++D Y
Sbjct: 55 SSPVDSGNTED-SKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 112
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 113 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 148
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 121 (47.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFV 134
P E P+ SK ++ V L Q T+E+LK F G +E K ++D Y FV
Sbjct: 56 PVEMPNGSEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 114
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
++ + ++A A+N LNG + T++VS A+P S
Sbjct: 115 NYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSS 148
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 121 (47.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
K LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKK 89
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 100 (40.3 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L+V L+ Y T++ L++ F +G+++ + I+D + F+ F+ +A A+ L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 150 NGQTVAGSTLEVSLAK 165
+G+ V G + V +AK
Sbjct: 69 DGKIVDGRLIFVEVAK 84
>UNIPROTKB|I3LMT3 [details] [associations]
symbol:RBM14 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
GO:GO:0016575 GeneTree:ENSGT00390000020883 OMA:SLTSYGA
Ensembl:ENSSSCT00000026592 Uniprot:I3LMT3
Length = 520
Score = 122 (48.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 107 CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
CT ++L+ FE+ GRV + DYAFVH E +A A+ +LNG+ V G + V L+
Sbjct: 4 CTSQELRSLFERRGRVIECDFLSDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 61
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 124 (48.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KRI---KDYAFVH 135
++E + + +S+ K L++RNLT C E+ LK F +G++E+V K+ K +A++
Sbjct: 311 EQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYID 370
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
F D +A+ A EL+ + G L V AK S
Sbjct: 371 FHDADDAVRAYLELDAKPFQGRLLHVLPAKARS 403
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 119 (46.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
+ LYV NL++ TE + + F Q G + K I D Y FV F + + A A+ +
Sbjct: 9 RTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAAALAAM 68
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 69 NGRKILGKDMKVNWASTPSSQKK 91
Score = 110 (43.8 bits), Expect = 0.00059, P = 0.00059
Identities = 30/119 (25%), Positives = 60/119 (50%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G D+ V+WA +T + V +V +L+ + + ++ AF +G++
Sbjct: 70 GRKIL--GKDMKVNWASTPSSQKKDTSNHFHV-FVGDLSPEISTDDVRAAFAPFGKISDA 126
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y F+ F ++ +A +A+ ++NGQ + G + + A KP + K E
Sbjct: 127 RVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNE 185
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 112 (44.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 30/94 (31%), Positives = 52/94 (55%)
Query: 87 PDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRV-------ERV-KRIKDYAFVHFED 138
P + + K K LYV L+ TE+ L++ FEQ+G + ++V R K +AF+ +E
Sbjct: 69 PSSSSGPKTK-LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYET 127
Query: 139 RQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
+EA+ A+ ++G+ + G + V AK SD +
Sbjct: 128 EEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSR 161
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 124 (48.7 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAF 133
D +EE D + L++RN+ CTEE LKE F ++G + V K+ K +AF
Sbjct: 388 DDEEEEDVAESGR---LFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAF 444
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170
V + + A++A+ +L+G T G L V ++ +K
Sbjct: 445 VTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEK 481
>UNIPROTKB|Q3ZCE8 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
Length = 174
Score = 111 (44.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KR---IKDYAFVHF 136
+EP + + +L+V + + TEE + + F +YG ++ + +R +K Y V +
Sbjct: 62 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY 121
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVS---LAKPPSDKKK 172
E +EA AM LNGQ + G + V + PP K++
Sbjct: 122 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRR 160
>UNIPROTKB|F6XAE9 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
Uniprot:F6XAE9
Length = 174
Score = 111 (44.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KR---IKDYAFVHF 136
+EP + + +L+V + + TEE + + F +YG ++ + +R +K Y V +
Sbjct: 62 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY 121
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVS---LAKPPSDKKK 172
E +EA AM LNGQ + G + V + PP K++
Sbjct: 122 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRR 160
>UNIPROTKB|Q9Y5S9 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
Ensembl:ENST00000369307 Ensembl:ENST00000578414
Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
Length = 174
Score = 111 (44.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KR---IKDYAFVHF 136
+EP + + +L+V + + TEE + + F +YG ++ + +R +K Y V +
Sbjct: 62 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY 121
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVS---LAKPPSDKKK 172
E +EA AM LNGQ + G + V + PP K++
Sbjct: 122 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRR 160
>RGD|1310099 [details] [associations]
symbol:Rbm8a "RNA binding motif protein 8A" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
Length = 174
Score = 111 (44.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KR---IKDYAFVHF 136
+EP + + +L+V + + TEE + + F +YG ++ + +R +K Y V +
Sbjct: 62 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY 121
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVS---LAKPPSDKKK 172
E +EA AM LNGQ + G + V + PP K++
Sbjct: 122 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRR 160
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 99 (39.9 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L++ L E+ L+ F +YGR+ V +KD +AFV FE +A A ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 150 NGQTVAGSTLEVSLAKPPS 168
NG+++ G ++V A PS
Sbjct: 70 NGKSLDGKAIKVEQATKPS 88
>UNIPROTKB|E2QV85 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
Uniprot:E2QV85
Length = 177
Score = 111 (44.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KR---IKDYAFVHF 136
+EP + + +L+V + + TEE + + F +YG ++ + +R +K Y V +
Sbjct: 65 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY 124
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVS---LAKPPSDKKK 172
E +EA AM LNGQ + G + V + PP K++
Sbjct: 125 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRR 163
>UNIPROTKB|I3LI59 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
Length = 177
Score = 111 (44.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KR---IKDYAFVHF 136
+EP + + +L+V + + TEE + + F +YG ++ + +R +K Y V +
Sbjct: 65 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEY 124
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVS---LAKPPSDKKK 172
E +EA AM LNGQ + G + V + PP K++
Sbjct: 125 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRR 163
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 114 (45.2 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
+Y++NL + +EKLKE F +G + R K + K + V F +EA A++E+NG
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNG 199
Query: 152 QTVAGSTLEVSLAK 165
+ V L V+L +
Sbjct: 200 RIVGSKPLHVTLGQ 213
Score = 106 (42.4 bits), Expect = 0.00066, P = 0.00066
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
++V+N+ +EKLKE F +YG E VK I+D + FV +E + A A+ +L+
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 96
Query: 151 GQTVAGSTLEVSLAK 165
G+++ G L V A+
Sbjct: 97 GKSIDGKVLYVGRAQ 111
>TAIR|locus:2146564 [details] [associations]
symbol:AT5G28390 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530379 RefSeq:NP_198191.2 UniGene:At.49421
ProteinModelPortal:F4K739 SMR:F4K739 EnsemblPlants:AT5G28390.1
GeneID:832924 KEGG:ath:AT5G28390 PhylomeDB:F4K739 Uniprot:F4K739
Length = 180
Score = 111 (44.1 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 78 VDWADPQE--EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KR 127
V WA+ + E D+ S+VK LY++NL + T+E+LK FE +G++ +V K
Sbjct: 15 VSWAESRSGGEGDSSA-SQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKE 73
Query: 128 IKDYAFVHFEDRQEAITAM 146
Y FVH+ +R + A+
Sbjct: 74 DSRYGFVHYAERTSVMRAL 92
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 119 (46.9 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 100 VRNLTQYCTEEKLKEAFEQYGRVERVK--RIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
V NL Q TEE+LK+AF Q G V VK K Y +V F+ R A A+ + GQ +
Sbjct: 241 VANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQ 300
Query: 158 TLEVSLAKPP 167
+ +S +K P
Sbjct: 301 AVRISWSKNP 310
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 109 (43.4 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L+V L TEE L++ F +YG+V V +KD + FV FE+ ++A AM +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 150 NGQTVAGSTLEVSLA-KPPSDKK 171
NG++V G + V A K +D++
Sbjct: 68 NGKSVDGRQIRVDQAGKSSNDRR 90
>UNIPROTKB|G4MTV6 [details] [associations]
symbol:MGG_01579 "Pre-mRNA branch site protein p14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
Length = 115
Score = 98 (39.6 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR-----IKDYAFVHFEDRQEAITAMNELN 150
+ L+V+NL+ T E+L + F ++G + +V++ K AFV +ED +A A ++LN
Sbjct: 13 RALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIASNTKGTAFVVYEDVMDAKQACDKLN 72
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEI 176
G L V +P + KE++
Sbjct: 73 GFNFQNRYLVVLYHQPEKMARSKEDL 98
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 121 (47.7 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K I GK+ + + K + R ++ + ++E + V
Sbjct: 237 SFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKV-ERQAELKRRFEQLKQERISRYQG-V 294
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 295 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 354 NGRIVGSKPLYVALAQRKEERK 375
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 119 (46.9 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFE 137
EPD +T L V L Q ++++++ F +G VE K I+D Y FV++
Sbjct: 105 EPDPKTN-----LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYV 159
Query: 138 DRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
+++A A+N LNG + T++VS+A+P S+ K
Sbjct: 160 KQEDAEKAINALNGLRLQNKTIKVSIARPSSESIK 194
>FB|FBgn0260944 [details] [associations]
symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
melanogaster" [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
Length = 144
Score = 103 (41.3 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERV---KRIKDYAFVHFEDRQEAITAMNELNGQTV 154
+YV NL ++ +++ AF +YG + V + +AFV FEDR++A A L+G
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRC 72
Query: 155 AGSTLEVSLAKPPS-DKKKKE 174
G+ + V ++ S D+++ E
Sbjct: 73 CGTRIRVEMSSGRSRDRRRGE 93
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 121 (47.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAMNELN 150
LY++NL +EKLKE F +YG V K + + + FV + + +EA+ A++E+N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 151 GQTVAGSTLEVSLAKPPSDKK 171
G+ + L ++LA+ D++
Sbjct: 394 GKMIGRKPLYIALAQRKEDRR 414
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 117 (46.2 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L V L Q T+++L+ F G VE K I+D Y FV++ + ++A A+N L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG + T++VS+A+P S+ K
Sbjct: 82 NGLRLQSKTIKVSVARPSSESIK 104
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 115 (45.5 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S ER D K ++ K + GK + + K + R ++ + Q + D T +
Sbjct: 70 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-ERQTELKRKFE--QMKQDRITRYQG 126
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+
Sbjct: 127 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEM 186
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ VA L V+LA+ +++
Sbjct: 187 NGRIVATKPLYVALAQRKEERQ 208
>ZFIN|ZDB-GENE-040426-1938 [details] [associations]
symbol:rbm4.3 "RNA binding motif protein 4.3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1938
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 EMBL:AL928799 EMBL:BC067153 IPI:IPI00493442
RefSeq:NP_998482.1 UniGene:Dr.5277 SMR:Q6NXC1 STRING:Q6NXC1
Ensembl:ENSDART00000037817 Ensembl:ENSDART00000135207 GeneID:406277
KEGG:dre:406277 CTD:406277 InParanoid:Q6NXC1 OMA:RPYDAER
OrthoDB:EOG4J9N12 NextBio:20817910 Uniprot:Q6NXC1
Length = 341
Score = 117 (46.2 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTV 154
VK+ ++ NL Q ++LK F QYG V IK++AFVH +DR+ A A+ L+ +
Sbjct: 2 VKI-FIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKL 60
Query: 155 AGSTLEVSLAK 165
G+ + V ++
Sbjct: 61 HGTPINVEASR 71
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 115 (45.5 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAM 146
++ ++V N+ TEE+LK+ F + G V + + D Y F ++D++ A++AM
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 147 NELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
LNG+ +G L V A + +K KEE+
Sbjct: 75 RNLNGREFSGRALRVDNA---ASEKNKEEL 101
Score = 44 (20.5 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 207 PPMPRGSVP 215
PPMPRG +P
Sbjct: 323 PPMPRGPMP 331
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 115 (45.5 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAM 146
++ ++V N+ TEE+LK+ F + G V + + D Y F ++D++ A++AM
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 147 NELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
LNG+ +G L V A + +K KEE+
Sbjct: 75 RNLNGREFSGRALRVDNA---ASEKNKEEL 101
Score = 44 (20.5 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 207 PPMPRGSVP 215
PPMPRG +P
Sbjct: 323 PPMPRGPMP 331
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 120 (47.3 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 39/142 (27%), Positives = 68/142 (47%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K ++GK + + K + R ++ + ++E + V
Sbjct: 166 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQG-V 223
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 224 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 282
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 283 NGRIVGSKPLYVALAQRKEERK 304
Score = 112 (44.5 bits), Expect = 0.00080, P = 0.00080
Identities = 30/109 (27%), Positives = 60/109 (55%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E L+E F Q+G+ VK ++D + F
Sbjct: 105 RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGF 164
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ ++G ++ V A+ ++ K+K E L+
Sbjct: 165 VSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 213
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 118 (46.6 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 51 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 110
Query: 152 QTVAGSTLEVSLAKPPSDKK 171
+ V L V+LA+ ++K
Sbjct: 111 RIVGSKPLYVALAQRKEERK 130
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 24/92 (26%), Positives = 49/92 (53%)
Query: 89 TETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQ 140
T+ ++K VLYV ++ T + L+ AF +G + V +++K + F+ FE +
Sbjct: 8 TKGVNKKNVLYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPE 67
Query: 141 EAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
+A A++ ++ + G ++ S+AKP + K
Sbjct: 68 DAADALDNMHESEIFGRVIKCSIAKPIKNLNK 99
>UNIPROTKB|E1BW94 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
EMBL:AADN02018477 IPI:IPI00572573 RefSeq:XP_419986.1
UniGene:Gga.2001 ProteinModelPortal:E1BW94 SMR:E1BW94 PRIDE:E1BW94
Ensembl:ENSGALT00000026618 GeneID:421976 KEGG:gga:421976
NextBio:20824670 Uniprot:E1BW94
Length = 125
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITAMNELN 150
++LY+RNL T E++ + F +YG + +++ + A+V +ED +A A + L+
Sbjct: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 78
Query: 151 GQTVAGSTLEV-----SLAKPPSDKKKKEEILR 178
G V L V + A D KKKEE L+
Sbjct: 79 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLK 111
>UNIPROTKB|Q2KIQ7 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0005689 KO:K12833 OMA:YQSTKAF
GeneTree:ENSGT00390000005908 CTD:51639 HOVERGEN:HBG039634
OrthoDB:EOG4X0MTT EMBL:DAAA02031677 EMBL:BC112548 IPI:IPI00698072
RefSeq:NP_001039482.1 UniGene:Bt.45988 SMR:Q2KIQ7 STRING:Q2KIQ7
Ensembl:ENSBTAT00000004418 GeneID:508876 KEGG:bta:508876
InParanoid:Q2KIQ7 NextBio:20868714 Uniprot:Q2KIQ7
Length = 125
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITAMNELN 150
++LY+RNL T E++ + F +YG + +++ + A+V +ED +A A + L+
Sbjct: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 78
Query: 151 GQTVAGSTLEV-----SLAKPPSDKKKKEEILR 178
G V L V + A D KKKEE L+
Sbjct: 79 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLK 111
>UNIPROTKB|E2RRA3 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
EMBL:AAEX03010780 RefSeq:XP_532889.1 ProteinModelPortal:E2RRA3
SMR:E2RRA3 PRIDE:E2RRA3 Ensembl:ENSCAFT00000006355 GeneID:475682
KEGG:cfa:475682 NextBio:20851470 Uniprot:E2RRA3
Length = 125
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITAMNELN 150
++LY+RNL T E++ + F +YG + +++ + A+V +ED +A A + L+
Sbjct: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 78
Query: 151 GQTVAGSTLEV-----SLAKPPSDKKKKEEILR 178
G V L V + A D KKKEE L+
Sbjct: 79 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLK 111
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 27/105 (25%), Positives = 51/105 (48%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 31 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 87
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVS 162
+ +KD Y FV F ++ +A A+ + GQ + G + +
Sbjct: 88 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 132
>UNIPROTKB|Q9Y3B4 [details] [associations]
symbol:SF3B14 "Pre-mRNA branch site protein p14"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0005689 KO:K12833 OMA:YQSTKAF
EMBL:AF401310 EMBL:AF151868 EMBL:AF161523 EMBL:AF184213
EMBL:BC015463 IPI:IPI00032827 RefSeq:NP_057131.1 UniGene:Hs.177861
PDB:2F9D PDB:2F9J PDB:2FHO PDB:3LQV PDBsum:2F9D PDBsum:2F9J
PDBsum:2FHO PDBsum:3LQV ProteinModelPortal:Q9Y3B4 SMR:Q9Y3B4
IntAct:Q9Y3B4 MINT:MINT-3085643 STRING:Q9Y3B4 PhosphoSite:Q9Y3B4
DMDM:12585536 PaxDb:Q9Y3B4 PeptideAtlas:Q9Y3B4 PRIDE:Q9Y3B4
DNASU:51639 GeneID:51639 KEGG:hsa:51639 UCSC:uc002rev.3 CTD:51639
GeneCards:GC02M024290 HPA:HPA034829 HPA:HPA034830 MIM:607835
neXtProt:NX_Q9Y3B4 HOVERGEN:HBG039634 InParanoid:Q9Y3B4
OrthoDB:EOG4X0MTT PhylomeDB:Q9Y3B4 EvolutionaryTrace:Q9Y3B4
GenomeRNAi:51639 NextBio:55577 ArrayExpress:Q9Y3B4 Bgee:Q9Y3B4
Genevestigator:Q9Y3B4 GermOnline:ENSG00000115128 Uniprot:Q9Y3B4
Length = 125
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITAMNELN 150
++LY+RNL T E++ + F +YG + +++ + A+V +ED +A A + L+
Sbjct: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 78
Query: 151 GQTVAGSTLEV-----SLAKPPSDKKKKEEILR 178
G V L V + A D KKKEE L+
Sbjct: 79 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLK 111
>UNIPROTKB|F2Z5F1 [details] [associations]
symbol:LOC100521960 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 EMBL:CU928810
RefSeq:XP_003125412.1 ProteinModelPortal:F2Z5F1 SMR:F2Z5F1
PRIDE:F2Z5F1 Ensembl:ENSSSCT00000009397 GeneID:100521960
KEGG:ssc:100521960 Uniprot:F2Z5F1
Length = 125
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITAMNELN 150
++LY+RNL T E++ + F +YG + +++ + A+V +ED +A A + L+
Sbjct: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 78
Query: 151 GQTVAGSTLEV-----SLAKPPSDKKKKEEILR 178
G V L V + A D KKKEE L+
Sbjct: 79 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLK 111
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L++ L E+ L+ F +YGR+ V +KD +AFV FE +A A ++
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V ST + KP S K+
Sbjct: 72 NGKGVPSSTRFLQQFKPRSTKR 93
>MGI|MGI:1913305 [details] [associations]
symbol:0610009D07Rik "RIKEN cDNA 0610009D07 gene"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1913305
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908
HOVERGEN:HBG039634 OrthoDB:EOG4X0MTT EMBL:AK002375 EMBL:AK003683
EMBL:AK151648 EMBL:BC019535 IPI:IPI00117687 RefSeq:NP_079599.1
UniGene:Mm.102627 ProteinModelPortal:P59708 SMR:P59708
STRING:P59708 PhosphoSite:P59708 PaxDb:P59708 PRIDE:P59708
Ensembl:ENSMUST00000046207 GeneID:66055 KEGG:mmu:66055
UCSC:uc007myi.1 InParanoid:P59708 NextBio:320494 Bgee:P59708
CleanEx:MM_0610009D07RIK Genevestigator:P59708
GermOnline:ENSMUSG00000037361 Uniprot:P59708
Length = 125
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITAMNELN 150
++LY+RNL T E++ + F +YG + +++ + A+V +ED +A A + L+
Sbjct: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 78
Query: 151 GQTVAGSTLEV-----SLAKPPSDKKKKEEILR 178
G V L V + A D KKKEE L+
Sbjct: 79 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLK 111
>ZFIN|ZDB-GENE-040625-36 [details] [associations]
symbol:sf3b14 "splicing factor 3B" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232 KO:K12833
OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
HOVERGEN:HBG039634 OrthoDB:EOG4X0MTT EMBL:BX510920 EMBL:BC071385
IPI:IPI00495681 RefSeq:NP_001002067.1 UniGene:Dr.3658 SMR:Q6IQM0
STRING:Q6IQM0 Ensembl:ENSDART00000017485 GeneID:415157
KEGG:dre:415157 InParanoid:Q6IQM0 NextBio:20818830 Uniprot:Q6IQM0
Length = 125
Score = 97 (39.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITAMNELN 150
++LY+RNL T E++ + F +YG + +++ + A+V +ED +A A + L+
Sbjct: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 78
Query: 151 GQTVAGSTLEV-----SLAKPPSDKKKKEEILR 178
G V L V + A D KKKEE L+
Sbjct: 79 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLK 111
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 39/142 (27%), Positives = 68/142 (47%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K ++GK + + K + R ++ + ++E + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQG-V 294
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 295 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 354 NGRIVGSKPLYVALAQRKEERK 375
Score = 112 (44.5 bits), Expect = 0.00088, P = 0.00087
Identities = 30/109 (27%), Positives = 60/109 (55%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E L+E F Q+G+ VK ++D + F
Sbjct: 176 RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGF 235
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ ++G ++ V A+ ++ K+K E L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 284
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 87 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y FV F ++ +A A+ + GQ + G + + A KPP+ K +E
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 87 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y FV F ++ +A A+ + GQ + G + + A KPP+ K +E
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 70 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y FV F ++ +A A+ + GQ + G + + A KPP+ K +E
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185
Score = 114 (45.2 bits), Expect = 0.00023, P = 0.00023
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
+ LYV NL++ TE + + F Q G + K I + Y FV F + ++A A+ +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKK 91
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 40/142 (28%), Positives = 68/142 (47%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S ER D K ++ K + GK + + K + R ++ + Q + D T +
Sbjct: 106 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-ERQTELKRKFE--QMKQDRITRYQG 162
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+
Sbjct: 163 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEM 222
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ VA L V+LA+ +++
Sbjct: 223 NGRIVATKPLYVALAQRKEERQ 244
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 109 (43.4 bits), Expect = 0.00011, P = 0.00011
Identities = 28/99 (28%), Positives = 51/99 (51%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KR---IKDYAFVHF 136
+EP + + +L+V + + TEE + + F ++G ++ + +R +K YA V +
Sbjct: 62 DEPGPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEY 121
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVS---LAKPPSDKKK 172
E +EA AM LNGQ + G + V + PP K++
Sbjct: 122 ETYKEAQAAMEGLNGQELMGQPISVDWCFVRGPPKSKRR 160
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 70 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y FV F ++ +A A+ + GQ + G + + A KPP+ K +E
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185
Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
+ LYV NL++ TE + + F Q G + K I + Y FV F + ++A A+ +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG+ + G ++V+ A PS +KK
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKK 91
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 39/142 (27%), Positives = 68/142 (47%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S E+ D K +E K ++GK + + K + R ++ + ++E + V
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKV-ERQAELKRKFEQLKQERISRYQG-V 294
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+
Sbjct: 295 N-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ V L V+LA+ ++K
Sbjct: 354 NGRIVGSKPLYVALAQRKEERK 375
Score = 112 (44.5 bits), Expect = 0.00093, P = 0.00093
Identities = 30/109 (27%), Positives = 60/109 (55%)
Query: 84 QEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAF 133
++E + E +K K +Y++N + +E L+E F Q+G+ VK ++D + F
Sbjct: 176 RKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGF 235
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK----KKKEEILR 178
V +E ++A A+ E+NG+ ++G ++ V A+ ++ K+K E L+
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 284
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 86 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 142
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y FV F ++ +A A+ + GQ + G + + A KPP+ K +E
Sbjct: 143 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 201
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 87 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y FV F ++ +A A+ + GQ + G + + A KPP+ K +E
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 87 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y FV F ++ +A A+ + GQ + G + + A KPP+ K +E
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 87 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y FV F ++ +A A+ + GQ + G + + A KPP+ K +E
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 87 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y FV F ++ +A A+ + GQ + G + + A KPP+ K +E
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV 125
G+ +L G ++ V+WA +T + V +V +L+ T E +K AF +G++
Sbjct: 87 GRKIL--GKEVKVNWATTPSSQKKDTSNHFHV-FVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 126 KRIKD--------YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA--KPPSDKKKKE 174
+ +KD Y FV F ++ +A A+ + GQ + G + + A KPP+ K +E
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 202
>UNIPROTKB|G3V251 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V251 SMR:G3V251 Ensembl:ENST00000554891
ArrayExpress:G3V251 Bgee:G3V251 Uniprot:G3V251
Length = 126
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 89 TETMSKVKVLYVRNLTQYCTEEKLKEA-FEQYGRVERVKRIKDYAFVHFEDRQEAITAMN 147
T+ S +++ NL ++ EA F +YG++ K +AFV + + + A A+
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVA 68
Query: 148 ELNGQTVAGSTLEVSLAKPPSDKKKKEEILRN 179
+G+ +AG L+++LA P + K + R+
Sbjct: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAGVKRS 100
>UNIPROTKB|G3V3K6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V3K6 SMR:G3V3K6 Ensembl:ENST00000556226
ArrayExpress:G3V3K6 Bgee:G3V3K6 Uniprot:G3V3K6
Length = 121
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 89 TETMSKVKVLYVRNLTQYCTEEKLKEA-FEQYGRVERVKRIKDYAFVHFEDRQEAITAMN 147
T+ S +++ NL ++ EA F +YG++ K +AFV + + + A A+
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVA 68
Query: 148 ELNGQTVAGSTLEVSLAKPPSDKKKKEEILRN 179
+G+ +AG L+++LA P + K + R+
Sbjct: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAGVKRS 100
>UNIPROTKB|G3V5X6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V5X6 SMR:G3V5X6 Ensembl:ENST00000555176
ArrayExpress:G3V5X6 Bgee:G3V5X6 Uniprot:G3V5X6
Length = 117
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 89 TETMSKVKVLYVRNLTQYCTEEKLKEA-FEQYGRVERVKRIKDYAFVHFEDRQEAITAMN 147
T+ S +++ NL ++ EA F +YG++ K +AFV + + + A A+
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVA 68
Query: 148 ELNGQTVAGSTLEVSLAKPPSDKKKKEEILRN 179
+G+ +AG L+++LA P + K + R+
Sbjct: 69 GEDGRMIAGQVLDINLAAEPKVNRGKAGVKRS 100
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHF 136
QE T +K +YV+NL + T++ LK AF +YG++ +KD + FV+F
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
E+ +A A+ LNG V A+ S+++
Sbjct: 263 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSERE 297
Score = 113 (44.8 bits), Expect = 0.00066, P = 0.00066
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
LYV+NL ++EKLKE F +G V K ++D FV F +EA AM++L+
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379
Query: 151 GQTVAGSTLEVSLAKPPSDKK 171
G+ + L V++A+ D++
Sbjct: 380 GKMIESKPLYVAIAQRKEDRR 400
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
+Y++NL + +EKLKE F +G + R K + K + V F ++A A++E+NG
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEDATKAVDEMNG 363
Query: 152 QTVAGSTLEVSLAK 165
+TV L V+L +
Sbjct: 364 RTVGSKPLHVTLGQ 377
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L V L Q T+++L+ F G VE K I+D Y FV++ + ++A A+N L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
NG + T++VS A+P S+ K
Sbjct: 82 NGLRLQSKTIKVSFARPSSETIK 104
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 114 (45.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAM 146
++ ++V N+ TEE+LK+ F + G V + + D Y F ++D++ A++AM
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 147 NELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
LNG+ +G L V A + +K KEE+
Sbjct: 75 RNLNGREFSGRALRVDNA---ASEKNKEEL 101
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 205 TGP-PMPRGSVPLQAALSSTRMG 226
+GP M RG VP+Q ++ + G
Sbjct: 270 SGPVSMERGQVPMQDPRAAMQRG 292
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA-------FVHFEDRQEAITAMNELN 150
LYV+NL + T++KL+E F +G + K ++D + FV F +EA A+ E+N
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK 173
G+ + L V+LA+ D+K +
Sbjct: 389 GKMIVTKPLYVALAQRKEDRKAR 411
>UNIPROTKB|I3LIU9 [details] [associations]
symbol:LOC100621482 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
Ensembl:ENSSSCT00000027593 OMA:GYGKMCK Uniprot:I3LIU9
Length = 148
Score = 103 (41.3 bits), Expect = 0.00016, P = 0.00016
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 86 EPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITA 145
E + + K LYV NL+ Y TEE++ E F + G ++++ + FV + R +A A
Sbjct: 30 EEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMACGFCFVEYYSRADAENA 89
Query: 146 MNELNG 151
M +NG
Sbjct: 90 MRYING 95
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L V N+++ E++L++ FE++GRV RV KD +AF+ F DR++A+ A N++
Sbjct: 225 LRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNKM 284
Query: 150 NGQTVAGSTLEVSLAK 165
+G L V AK
Sbjct: 285 DGWGFKHLILRVEFAK 300
>SGD|S000002840 [details] [associations]
symbol:NPL3 "RNA-binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006406 "mRNA export from nucleus" evidence=IGI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA;IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006415 "translational termination" evidence=IGI;IMP]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:2000805 "negative regulation of termination of
RNA polymerase II transcription, poly(A)-coupled" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IDA] [GO:0031370 "eukaryotic initiation
factor 4G binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000002840 EMBL:U33007 GO:GO:0005634 GO:GO:0005737
GO:GO:0005730 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006938 GO:GO:0030529 GO:GO:0006406 GO:GO:0000398
GO:GO:0006364 GO:GO:0032968 eggNOG:COG0724 GO:GO:0008143
EMBL:X70951 GO:GO:0006415 GeneTree:ENSGT00570000079107
GO:GO:0031370 RefSeq:NP_010725.3 GeneID:852047 KEGG:sce:YDR437W
KO:K03861 EMBL:X66019 EMBL:M86731 PIR:JN0866 RefSeq:NP_010720.3
PDB:2JVO PDB:2JVR PDB:2OSQ PDB:2OSR PDBsum:2JVO PDBsum:2JVR
PDBsum:2OSQ PDBsum:2OSR ProteinModelPortal:Q01560 SMR:Q01560
DIP:DIP-6464N IntAct:Q01560 MINT:MINT-600838 STRING:Q01560
PaxDb:Q01560 PeptideAtlas:Q01560 EnsemblFungi:YDR432W GeneID:852042
KEGG:sce:YDR432W CYGD:YDR432w OMA:ANQPLEV OrthoDB:EOG4BP4N7
EvolutionaryTrace:Q01560 NextBio:970290 Genevestigator:Q01560
GermOnline:YDR432W GO:GO:2000805 Uniprot:Q01560
Length = 414
Score = 116 (45.9 bits), Expect = 0.00016, P = 0.00016
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGS 157
L+VR E +L E F +G ++ VK + +AFV FE+ + A A+ E++G++ A
Sbjct: 127 LFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQ 186
Query: 158 TLEVSLAKPPSDK 170
LEV +K P+ +
Sbjct: 187 PLEVVYSKLPAKR 199
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+YV L + ++E LK F YG ++ + +K YA++ + ++++A+ A+++L
Sbjct: 6 IYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAIDDL 65
Query: 150 NGQTVAGSTLEV 161
N Q G+ LE+
Sbjct: 66 NDQPFEGNHLEL 77
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L+V L+ E+ L++ F +YG++ V +KD + FV FE+ +A AM +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 150 NGQTVAGSTLEVSLAKPPS 168
NG++V G + V PS
Sbjct: 68 NGKSVDGRQIRVDQPLRPS 86
>UNIPROTKB|Q5QPM2 [details] [associations]
symbol:RALY "RNA-binding protein Raly" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL031668
UniGene:Hs.136947 HGNC:HGNC:15921 ChiTaRS:RALY EMBL:AL034549
IPI:IPI00640938 SMR:Q5QPM2 MINT:MINT-1399328 STRING:Q5QPM2
Ensembl:ENST00000413297 Uniprot:Q5QPM2
Length = 89
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 98 LYVRNL-TQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAG 156
+++ NL T + ++ F +YGRV K YAFV + + + A A+ NG+ +AG
Sbjct: 23 VFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAG 82
Query: 157 STLEVSL 163
TL++++
Sbjct: 83 QTLDINM 89
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
+YV NL + E L + F ++G +E VK R K YAFV + ++A+ A+ +
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKAL-DA 104
Query: 150 NGQTVAGSTLEVSLAK 165
+G+ + G +L V +AK
Sbjct: 105 HGKDLQGRSLVVRIAK 120
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
+YV NL + E L + F ++G +E VK R K YAFV + ++A+ A+ +
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKAL-DA 104
Query: 150 NGQTVAGSTLEVSLAK 165
+G+ + G +L V +AK
Sbjct: 105 HGKDLQGRSLVVRIAK 120
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 25/83 (30%), Positives = 50/83 (60%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
+YV+NL E+ L++ F Q+G+ + VK ++D + F++FE +EA A++ +N
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMN 252
Query: 151 GQTVAGSTLEVSLAKPPSDKKKK 173
G+ V+G L V A+ ++++ +
Sbjct: 253 GKEVSGQLLYVGRAQKRAERQNE 275
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
LYV+NL +++LKE F YG + K + K + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRN 179
+ V L V+LA+ K++++ IL N
Sbjct: 356 RIVGTKPLYVALAQR---KEERKAILTN 380
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNELNG 151
LYV+NL +EKL++ F YG + K + D + FV F +EA A+ E+NG
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRN 179
+ V+ L V+LA+ K++++ IL N
Sbjct: 356 RIVSTKPLYVALAQR---KEERKAILTN 380
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 40/142 (28%), Positives = 69/142 (48%)
Query: 36 SSERTPDYTKLLEYGLDKRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
S ER D + ++ K + GKL + + K + R ++ + Q + D T +
Sbjct: 237 SFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKV-ERQTELKRKFE--QMKQDRMTRYQG 293
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNEL 149
LYV+NL +E+L++ F +G + K R K + FV F +EA A+ E+
Sbjct: 294 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ VA L V+LA+ +++
Sbjct: 354 NGRIVATKPLYVALAQRKEERQ 375
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LY++NL +EKL++ F +G + K R K + FV F +EA A+ E+NG
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNG 356
Query: 152 QTVAGSTLEVSLAKPPSDKK 171
+ V L V+LA+ ++K
Sbjct: 357 RIVGSKPLYVALAQRKEERK 376
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 115 (45.5 bits), Expect = 0.00018, P = 0.00018
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVK 126
L +GC + V +++ + E SK +Y++N +E+LK+ F +YG+ VK
Sbjct: 161 LLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVK 220
Query: 127 -------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ K + FV F+ + A A+ E+NG+ + G + V A+ +++
Sbjct: 221 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 111 (44.1 bits), Expect = 0.00052, P = 0.00052
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LY++NL +EKL+ F +G + RVK + K + + F ++A AM E+NG
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNG 354
Query: 152 QTVAGSTLEVSLAK 165
+ + L ++LA+
Sbjct: 355 RILGSKPLSIALAQ 368
>UNIPROTKB|Q5QPM1 [details] [associations]
symbol:RALY "RNA-binding protein Raly" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000231958
HOVERGEN:HBG002302 EMBL:AL031668 UniGene:Hs.136947 HGNC:HGNC:15921
ChiTaRS:RALY EMBL:AL034549 IPI:IPI00641351 SMR:Q5QPM1 STRING:Q5QPM1
Ensembl:ENST00000448364 Uniprot:Q5QPM1
Length = 181
Score = 108 (43.1 bits), Expect = 0.00018, P = 0.00018
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 98 LYVRNL-TQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAG 156
+++ NL T + ++ F +YGRV K YAFV + + + A A+ NG+ +AG
Sbjct: 23 VFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAG 82
Query: 157 STLEVSLA-KPPSDKKK 172
TL++++A +P D+ K
Sbjct: 83 QTLDINMAGEPKPDRPK 99
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L V L Q T+E+L+ F G +E K I+D Y FV++ ++A A+N L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 150 NGQTVAGSTLEVSLAKPPSD 169
NG + T++VS A+P S+
Sbjct: 82 NGLRLQSKTIKVSYARPSSE 101
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAF 133
D + PD ++ +K+ NL+ T L+ FE+YG + V ++ K + F
Sbjct: 8 DRRAAPDINGLTSLKI---DNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGF 64
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAK--PPSDKK 171
V F +R++A A++ +G+ V G L V+LAK PSD++
Sbjct: 65 VRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDER 104
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAF 133
D + PD ++ +K+ NL+ T L+ FE+YG + V ++ K + F
Sbjct: 8 DRRAAPDINGLTSLKI---DNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGF 64
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAK--PPSDKK 171
V F +R++A A++ +G+ V G L V+LAK PSD++
Sbjct: 65 VRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDER 104
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 94 (38.1 bits), Expect = 0.00021, P = 0.00021
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L++ L + T++ L+E F +YG +E +KD + FV F EA AM +
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63
Query: 150 NGQTVAGSTLEVSLA 164
N Q G + V A
Sbjct: 64 NNQEFDGRIIRVDKA 78
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 114 (45.2 bits), Expect = 0.00022, P = 0.00022
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YA 132
+ P + +TE SK ++ L Q T+E+LK F G +E K ++D Y
Sbjct: 26 SSPVDSGNTED-SKTNLID-NYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 114 (45.2 bits), Expect = 0.00022, P = 0.00022
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YA 132
+ P + +TE SK ++ L Q T+E+LK F G +E K ++D Y
Sbjct: 26 SSPVDSGNTED-SKTNLID-NYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS 168
FV++ D ++A A+N LNG + T++VS A+P S
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 113 (44.8 bits), Expect = 0.00022, P = 0.00022
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVER--VKRIKD--YAFVHFEDRQEAITAMNELNGQT 153
LY+ L+ T++ L + F +YG + R VK+ YAFV +++R++A A+ LNG T
Sbjct: 3 LYIGRLSVETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGTT 62
Query: 154 VAGSTLEVSLAK 165
+ S + V AK
Sbjct: 63 LLNSKISVEWAK 74
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 115 (45.5 bits), Expect = 0.00022, P = 0.00022
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 70 LSRGCDIIVDWADPQEEPDTETMSKVKV---LYVRNLTQYCTEEKLKEAFEQYGRVERVK 126
L +GC + V +++ + E SK +Y++N +E+LK+ F +YG+ VK
Sbjct: 219 LLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVK 278
Query: 127 -------RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKK 171
+ K + FV F+ + A A+ E+NG+ + G + V A+ +++
Sbjct: 279 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQ 330
Score = 111 (44.1 bits), Expect = 0.00066, P = 0.00066
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK------RIKDYAFVHFEDRQEAITAMNELNG 151
LY++NL +EKL+ F +G + RVK + K + + F ++A AM E+NG
Sbjct: 353 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNG 412
Query: 152 QTVAGSTLEVSLAK 165
+ + L ++LA+
Sbjct: 413 RILGSKPLSIALAQ 426
>UNIPROTKB|E1BT73 [details] [associations]
symbol:RALY "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000006718 EMBL:AADN02019478 EMBL:AADN02019479
EMBL:AADN02019480 IPI:IPI00577610 ProteinModelPortal:E1BT73
Ensembl:ENSGALT00000003194 Uniprot:E1BT73
Length = 179
Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 98 LYVRNL-TQYCTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAG 156
+++ NL T + ++ F +YGRV K YAFV + + + A A+ NG+ +AG
Sbjct: 23 VFIGNLNTAVVKKSDVETIFSKYGRVVGCSVHKGYAFVQYSNERHARAAVLGENGRVLAG 82
Query: 157 STLEVSLAKPPSDKKKK 173
TL++++A P + K
Sbjct: 83 QTLDINMAGEPKPNRPK 99
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 115 (45.5 bits), Expect = 0.00023, P = 0.00023
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAM 146
++ ++V N+ TEE+LK+ F + G V + + D Y F ++D++ A++AM
Sbjct: 19 LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 78
Query: 147 NELNGQTVAGSTLEVSLAKPPSDKKKKEEI 176
LNG+ +G L V A + +K KEE+
Sbjct: 79 RNLNGREFSGRALRVDNA---ASEKNKEEL 105
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 101 (40.6 bits), Expect = 0.00023, P = 0.00023
Identities = 23/87 (26%), Positives = 51/87 (58%)
Query: 91 TMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAI 143
++ K K L++ L CT+E+L+E + +G V+ ++ + K A+V +E+ +A
Sbjct: 36 SLEKHK-LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQAS 94
Query: 144 TAMNELNGQTVAGSTLEVSLAKPPSDK 170
A+ +++G T+ + ++V+++ PP K
Sbjct: 95 QAVMKMDGMTIKENIIKVAISNPPQRK 121
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 115 (45.5 bits), Expect = 0.00024, P = 0.00024
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQTVA 155
+YV N++Q T+ L++ F YG + V+ K YAFV +E ++ A A+ E+NG+ +A
Sbjct: 329 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEMA 388
Query: 156 GSTLEVS 162
G+ + S
Sbjct: 389 GNQVRCS 395
WARNING: HSPs involving 146 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 230 213 0.00084 112 3 11 23 0.42 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 396
No. of states in DFA: 594 (63 KB)
Total size of DFA: 157 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.74u 0.09s 21.83t Elapsed: 00:00:04
Total cpu time: 21.77u 0.09s 21.86t Elapsed: 00:00:04
Start: Thu Aug 15 12:39:11 2013 End: Thu Aug 15 12:39:15 2013
WARNINGS ISSUED: 2