RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1188
(230 letters)
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 83.1 bits (205), Expect = 2e-21
Identities = 41/82 (50%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITA 145
D +TMS VK+LYVRNL +EE +++ F RVK+I+DYAFVHF +R++A+ A
Sbjct: 1 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEA 60
Query: 146 MNELNGQTVAGSTLEVSLAKPP 167
M LNG+ + GS +EV+LAKP
Sbjct: 61 MKALNGKVLDGSPIEVTLAKPV 82
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 79.5 bits (196), Expect = 5e-20
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 87 PDTETMSKVKVLYVRNLTQY-CTEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITA 145
T+ S +++ NL + ++ F +YG++ K +AFV + + + A A
Sbjct: 7 GKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAA 66
Query: 146 MNELNGQTVAGSTLEVSLAKPPSDKKK 172
+ +G+ +AG L+++LA P +
Sbjct: 67 VAGEDGRMIAGQVLDINLAAEPKVNRS 93
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 78.9 bits (194), Expect = 1e-19
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERV-----KRIKDYAFVHFEDRQEAITAMNELN 150
++LY+RNL T E++ + F +YG + ++ + A+V +ED +A A + L+
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 67
Query: 151 GQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMMQMMQGRGGPGP 196
G V L V +K + + + ++++ G P
Sbjct: 68 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPP 113
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 71.5 bits (175), Expect = 4e-17
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK--RIKDYAFVHFEDRQEA 142
E+ ++ K +Y + T++ +++ F +G++ ++ K Y+FV F + A
Sbjct: 8 EDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESA 67
Query: 143 ITAMNELNGQTVAGSTLEVSLAKPPSD 169
A+ +NG T+ G ++ K D
Sbjct: 68 AHAIVSVNGTTIEGHVVKCYWGKESPD 94
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 70.1 bits (171), Expect = 1e-16
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVER-----------VKRIKDYAFVHFEDRQEAITAM 146
L+++NL TEE LK F + G ++ V + FV ++ ++A A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 147 NELNGQTVAGSTLEVSLAKPPS 168
+L G TV G LEV +++ +
Sbjct: 61 KQLQGHTVDGHKLEVRISERAT 82
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 70.0 bits (171), Expect = 1e-16
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMN 147
+T ++ L+V NL TEE++++ FE+YG+ V K + F+ E R A A
Sbjct: 3 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKV 62
Query: 148 ELNGQTVAGSTLEVSLAKPPS 168
EL+ + G L V A +
Sbjct: 63 ELDNMPLRGKQLRVRFACHSA 83
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 70.1 bits (171), Expect = 2e-16
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAMNEL 149
+ LYV NL++ TE + + F Q G + K I + Y FV F + ++A A+ +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG+ + G ++V+ A PS +K
Sbjct: 69 NGRKILGKEVKVNWATTPSSQK 90
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 68.9 bits (168), Expect = 3e-16
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA--------FVHFEDRQEAITAMNEL 149
L V L Q T+ +L F G + + ++DY FV F ++ A+ L
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
Query: 150 NGQTVAGSTLEVSLAKP 166
NG TV L+VS A+P
Sbjct: 65 NGITVRNKRLKVSYARP 81
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 68.4 bits (167), Expect = 5e-16
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDYA--------FVHFEDRQEAITAMNEL 149
LYV +L TE L E F G + ++ +D +V+F+ +A A++ +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 150 NGQTVAGSTLEVSLAK 165
N + G + + ++
Sbjct: 63 NFDVIKGKPVRIMWSQ 78
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 68.4 bits (167), Expect = 7e-16
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQE 141
+ + K LYV NL+ Y TEE++ E F + G ++++ D + FV + R +
Sbjct: 2 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD 61
Query: 142 AITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
A AM +NG + + + ++
Sbjct: 62 AENAMRYINGTRLDDRIIRTDWDAGFKEGRQ 92
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 67.7 bits (165), Expect = 1e-15
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNEL 149
LYV NL + T+++L F +YG + + + + AFV + R+EA A++ L
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 68
Query: 150 NGQTVAGST--LEVSLA 164
N G + L V LA
Sbjct: 69 NNVIPEGGSQPLSVRLA 85
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 66.1 bits (161), Expect = 3e-15
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-------YAFVHFEDRQEAITAMNELN 150
L V NL ++ ++E F ++G +++ D A VHFE + +A+ AM + N
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 151 GQTVAGSTLEVSLA 164
G + G + + L
Sbjct: 63 GVPLDGRPMNIQLV 76
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 66.6 bits (162), Expect = 3e-15
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 92 MSKVK-VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQEA 142
M+ K VLYV L + ++ L AF +G + ++ DY AFV FE ++A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 143 ITAMNELNGQTVAGSTLEVSLAKPPSDKKKKE 174
A++ +N + G T+ V+LAKP + KE
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKP---MRIKE 89
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 65.7 bits (160), Expect = 8e-15
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD---------YAFVH 135
+ P +T SK + VRN+ + +++E F +G ++ V+ K + FV
Sbjct: 1 QVPKKQTTSK---ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVD 57
Query: 136 FEDRQEAITAMNEL-NGQTVAGSTLEVSLAKPPSDKK 171
F +Q+A A N L + + G L + A +
Sbjct: 58 FITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 65.5 bits (159), Expect = 9e-15
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQE 141
++E+ S K L+V N+ + L++ F Q+G++ V+ I + + FV FE+ +
Sbjct: 4 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 63
Query: 142 AITAMNELNGQTVAGSTLEVSLAKP 166
A A +L+G V G +EV+ A
Sbjct: 64 ADRAREKLHGTVVEGRKIEVNNATA 88
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 65.2 bits (158), Expect = 9e-15
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD---------YAFVHFEDRQEAITAMNE 148
+++ NL E+ L + F +G + + +I YAF++F + A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 149 LNGQTVAGSTLEVSLAKPPSDK 170
+NGQ + + VS A K
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSK 82
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 63.9 bits (155), Expect = 4e-14
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD------YAFVHFEDRQEAITAM 146
S V ++++NL + + L + F +G + K + D Y FVHFE ++ A A+
Sbjct: 6 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI 65
Query: 147 NELNGQTVAGSTLEVSLAKPPSDK 170
++NG + + V K ++
Sbjct: 66 EKMNGMLLNDRKVFVGRFKSRKER 89
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 64.3 bits (156), Expect = 4e-14
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----KDYAFVHFEDRQEAITAMNE 148
S V + V NL T + L + F ++G V ++ + A + + D A A
Sbjct: 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 64
Query: 149 LNGQTV--AGSTLEVSLAKPPSDKKKKE 174
L+GQ + A TL + +K S K
Sbjct: 65 LDGQNIYNACCTLRIDFSKLTSLNVKYN 92
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 63.5 bits (154), Expect = 4e-14
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFV 134
P D + V NL++ E L+E F +G + R+ KD +AF+
Sbjct: 1 PNRRADDNA-----TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 55
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169
F R++A A+ ++G L V AKP ++
Sbjct: 56 SFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 90
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 63.5 bits (154), Expect = 4e-14
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 96 KVLYVRNLTQYCTEEKLKEA----FEQYG-----RVERVKRIKDYAFVHFEDRQEAITAM 146
+Y+ NL + +++LK++ F ++G V R +++ AFV F++ A A+
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 147 NELNGQTVAGSTLEVSLAKPPSDKKKK 173
+ G + + AK SD K
Sbjct: 64 RSMQGFPFYDKPMRIQYAKTDSDIIAK 90
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 63.1 bits (153), Expect = 6e-14
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
L++ L Y ++++KE +G ++ K YAF + D A+ L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 150 NGQTVAGSTLEVSLAKPPS 168
NG + L V A +
Sbjct: 64 NGMQLGDKKLLVQRASVGA 82
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 63.1 bits (153), Expect = 6e-14
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFV 134
P E + + +YV L + +E L E F Q G V + Y FV
Sbjct: 2 PISERNQDA-----TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 56
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
F ++A A+ ++ + G + V+ A
Sbjct: 57 EFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 88
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 62.8 bits (152), Expect = 7e-14
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITAMNEL 149
L V L Q T+E+ + F G +E + Y FV++ D ++A A+N L
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 150 NGQTVAGSTLEVSLAKP 166
NG + T++VS A+P
Sbjct: 65 NGLRLQTKTIKVSYARP 81
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 62.8 bits (152), Expect = 1e-13
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 85 EEPDT-ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYG---RVERVKRIKDYAFVHFEDRQ 140
E+P T + + + L +NL+ TE++LKE FE V + + K A++ F+
Sbjct: 5 EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEA 64
Query: 141 EAITAMNELNGQTVAGSTLEVSLAKP 166
+A + E G + G ++ +
Sbjct: 65 DAEKNLEEKQGAEIDGRSVSLYYTGE 90
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 62.0 bits (150), Expect = 2e-13
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
LYV L + T+++L++ F QYGR+ + + D F+ F+ R EA A+ L
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 150 NGQTVAGST--LEVSLA 164
NGQ +G+T + V A
Sbjct: 69 NGQKPSGATEPITVKFA 85
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 62.0 bits (150), Expect = 2e-13
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
L+VRNL+ +EE L++ F YG + + D +AFV F + A+ A E+
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 150 NGQTVAGSTLEVSLAKPPSDKKK 172
+GQ G L V + + +
Sbjct: 71 DGQVFQGRMLHVLPSTIKKEASQ 93
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 60.4 bits (146), Expect = 4e-13
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L+ T+E L+E F Q+G V+ ++D + FV F D+ +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQ 61
Query: 150 NGQTVAGSTLEVSLA 164
+ + T++ +A
Sbjct: 62 SRHELDSKTIDPKVA 76
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 60.8 bits (147), Expect = 5e-13
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY-----AFVHFEDRQEAITAMNELNGQ 152
+YV NL + +++ F +YG + + AFV FED ++A A+ +G
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 153 TVAGSTLEVSLAKPP 167
G L V +
Sbjct: 77 DYDGYRLRVEFPRSG 91
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 60.5 bits (146), Expect = 5e-13
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVE--RVKRIKDYAFVHFEDRQEAITAMNEL 149
M+K LY+ NL+ T + L++ F +V YAFV + D+ AI A+ L
Sbjct: 1 MNK---LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETL 57
Query: 150 NGQT-VAGSTLEVSLAKPPSDK 170
+G+ + G +EV + +
Sbjct: 58 SGKVELHGKIMEVDYSVSKKLR 79
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 60.1 bits (145), Expect = 8e-13
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQEAITAMN 147
L V L+ Y TE L+E F +YG + V + D AFV+FE+ +A A
Sbjct: 10 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
Query: 148 ELNGQTVAGSTLEV 161
NG + G + V
Sbjct: 70 RANGMELDGRRIRV 83
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 59.6 bits (144), Expect = 9e-13
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNEL 149
++V L+ EEK++E F +G VE ++ + + F+ F++ + M E
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM-EK 60
Query: 150 NGQTVAGSTLEVSLA 164
V S E+ +A
Sbjct: 61 KYHNVGLSKCEIKVA 75
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 59.6 bits (144), Expect = 1e-12
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 90 ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQE 141
+ K L V L TE+ LKE F +G V V+ KD + FV F + +
Sbjct: 3 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 62
Query: 142 AITAMNELNGQTVAGSTLEVSLAKPPSDK 170
+ M++ + + G + L +
Sbjct: 63 QVKVMSQRH--MIDGRWCDCKLPNSKQSQ 89
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 59.4 bits (143), Expect = 2e-12
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 22/101 (21%)
Query: 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD----------- 130
DP E+ D +YV+ L T + L + F+Q G V+ KR
Sbjct: 1 DPDEDSDNSA------IYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET 54
Query: 131 -----YAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
A V +ED A A+ +G+ GS L+VSLA+
Sbjct: 55 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 95
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 58.9 bits (142), Expect = 3e-12
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHFEDRQEAITAMNEL 149
L++ +L Q ++ L + F +G V K + FV +++ A A+ +
Sbjct: 21 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 80
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG + L+V L + +D K
Sbjct: 81 NGFQIGMKRLKVQLKRSKNDSK 102
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 59.0 bits (142), Expect = 4e-12
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 96 KVLYVRNL-TQYCTEEKLKEAFEQYGRVERVK---RIKDYAFVHFEDRQEAITAMNELNG 151
VL V NL + T + L F YG V+RVK K+ A V D +A AM+ LNG
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG 62
Query: 152 QTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
+ G + ++L+K + + +E +
Sbjct: 63 HKLHGKPIRITLSKHQNVQLPREGQEDQGLTK 94
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 58.2 bits (140), Expect = 4e-12
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD-YAFVHFEDRQEAITAMNELNG 151
S + V+NL Q +++ + + Y AFV + ++A A+ +
Sbjct: 3 SGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQ 62
Query: 152 QTVAGSTLEVSLAKPPS 168
+ G L V L +
Sbjct: 63 YSFRGKDLIVQLQPTDA 79
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 57.7 bits (139), Expect = 5e-12
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD---YAFVHFEDRQEAITAMNELNGQTV 154
++V T TE++L+E F QYG V V K +AFV F D Q A + +
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLII 65
Query: 155 AGSTLEVSLAKPPSDKKK 172
G ++ +S A+P +
Sbjct: 66 KGISVHISNAEPKHNSNS 83
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 57.5 bits (138), Expect = 7e-12
Identities = 13/77 (16%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK--------RIKDYAFVHFEDRQEAITAMNEL 149
L++ N T+ +++ + V + +A++ +++A + +L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 150 NGQTVAGSTLEVSLAKP 166
NG + G TL ++ P
Sbjct: 64 NGLKIEGYTLVTKVSNP 80
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 57.8 bits (139), Expect = 8e-12
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----------KDYAFVHFEDRQEAITAMN 147
L++ + + E++ E + + + +AFV +E + A A
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 148 ELNGQTV--AGSTLEVSLAKPPSDKKKKE 174
+L + G + V A+P D +
Sbjct: 64 KLMPGRIQLWGHQIAVDWAEPEIDVDEDV 92
Score = 40.1 bits (93), Expect = 2e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 66 GKHLLSRGCDIIVDWADPQEEPDTETMSKV 95
+ G I VDWA+P+ + D + M V
Sbjct: 67 PGRIQLWGHQIAVDWAEPEIDVDEDVMETV 96
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 57.4 bits (138), Expect = 8e-12
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--------KDYAFVHFEDRQEAITAMNEL 149
L+V L+ E+ L++ F +YG++ V + + + FV FE+ +A AM +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 150 NGQTVAGSTLEVSLAKPPSDKK 171
NG++V G + V A SD +
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 57.4 bits (138), Expect = 8e-12
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNE 148
+L+V ++ + E++++E F YG ++ + D YA V +E ++A+ A
Sbjct: 9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 68
Query: 149 LNGQTVAGSTLEVSLAKP 166
LNG + G T++V
Sbjct: 69 LNGAEIMGQTIQVDWCFV 86
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 57.7 bits (139), Expect = 9e-12
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 81 ADPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YA 132
+P + E + ++ L L++ F G+V V+ I D A
Sbjct: 5 REPVDNLSPEERDA-RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIA 63
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170
+V F + Q L GQ + G + V ++ ++
Sbjct: 64 YVEFCEIQSV-PLAIGLTGQRLLGVPIIVQASQAEKNR 100
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 56.6 bits (136), Expect = 1e-11
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNG 151
K LYV T L+ AF +G + + AFV +E + A A+ ELNG
Sbjct: 4 KGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNG 61
Query: 152 QTVAGSTLEVSLAKP 166
V L+V++A+
Sbjct: 62 TQVESVQLKVNIARK 76
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 55.8 bits (134), Expect = 3e-11
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNEL 149
+++ L+ T++ LK+ F ++G V D + FV F++ + M +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQ 60
Query: 150 NGQTVAGSTLEVSLA 164
+ G ++ A
Sbjct: 61 KEHKLNGKVIDPKRA 75
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 55.8 bits (134), Expect = 3e-11
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHF 136
+EP+ +++ L++ L+ T+E L+ FEQ+G + KR + + FV +
Sbjct: 1 KEPE-----QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 55
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLA 164
+E AM V G +E A
Sbjct: 56 ATVEEVDAAM-NARPHKVDGRVVEPKRA 82
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 56.1 bits (135), Expect = 3e-11
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 92 MSKVKVLYVRNL-----------TQYCTEEKLKEAFEQYGRVERVKRIKD----YAFVHF 136
M +V+ ++N+ E L+ ++G++ ++ A V F
Sbjct: 5 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSF 64
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169
D +EA + L+G+ G + +D
Sbjct: 65 RDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 97
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 55.9 bits (134), Expect = 4e-11
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 82 DPQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AF 133
DP + + ++V N+ TEE+LK+ F + G V + + D F
Sbjct: 1 DPAVDRSLRS------VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 54
Query: 134 VHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
++D++ A++AM LNG+ +G L V A +K++
Sbjct: 55 CEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 93
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 55.1 bits (132), Expect = 5e-11
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNE 148
++ V+N+ + +++ + F Y + +K A V FE R EA A+ +
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 70
Query: 149 LNGQTVAGSTLEVSLA 164
LN + + +++ L
Sbjct: 71 LNDRPIGSRKVKLVLG 86
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 55.6 bits (133), Expect = 6e-11
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKDYAFVHFEDRQEAITA 145
+S V++VR L + E L EA E++G + V K A V FE+ A
Sbjct: 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKEC 67
Query: 146 MNELNGQ--TVAGSTLEVSLAKPPSDKKKKEE 175
+ +AG + + +
Sbjct: 68 VTFAADVPVYIAGQQAFFNYSTSKRITRPGNS 99
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 55.5 bits (133), Expect = 6e-11
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKDYAFVHFEDRQEAITAMNELNGQT 153
L+V L + L F+++G + + + +A++ +E A A ++ G
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFP 77
Query: 154 VAGST--LEVSLAKP 166
+ G L V AK
Sbjct: 78 LGGPDRRLRVDFAKS 92
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 54.0 bits (129), Expect = 1e-10
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI----KDYAFVHFEDRQEAITAMNELNG 151
L++ N+ +EE LK F G V + + + A + +EA+ A+ +L+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 70
Query: 152 QTVA-GSTLEVSLAKPP 167
+ L VS +K
Sbjct: 71 HDLGENHHLRVSFSKST 87
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 54.7 bits (131), Expect = 1e-10
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKR--------IKDYAFV 134
P E E + + L++ L+ TEE L+ +EQ+G++ + + FV
Sbjct: 9 PLERKKREK-EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFV 67
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
F E AM ++ G +E A
Sbjct: 68 TFSSMAEVDAAM-AARPHSIDGRVVEPKRAVA 98
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 54.7 bits (131), Expect = 1e-10
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 82 DPQEEPDT--ETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYA 132
+PQ + S V + ++ EE E E+YG VE + +
Sbjct: 12 NPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNV 71
Query: 133 FVHFEDRQEAITAMNELNGQTVAGSTLEVSL 163
+V F ++A A+ +LN + G + L
Sbjct: 72 YVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 53.9 bits (129), Expect = 1e-10
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 96 KVLYVRNL-TQYCTEEKLKEAFEQYGRVERVKR--IKDYAFVHFEDRQEAITAMN--ELN 150
+V+++ + +L + E +G + + AF+ ++A A++
Sbjct: 9 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTT 68
Query: 151 GQTVAGSTLEVSLAKPPSDKK 171
V G + V L++ K
Sbjct: 69 PALVFGKPVRVHLSQKYKRIK 89
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 53.6 bits (128), Expect = 1e-10
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIK--------DYAFVHFEDRQEAITAMNEL 149
++V L+ T E +K FEQ+G+V+ + + FV FE E+
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EI 60
Query: 150 NGQTVAGSTLEVSLA 164
+ + +E A
Sbjct: 61 HFHEINNKMVECKKA 75
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 52.8 bits (126), Expect = 3e-10
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAM 146
VK ++V + + E L++ FEQYG++E ++ + D +AFV F+D +++ +
Sbjct: 2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH-DSVDKI 60
Query: 147 NELNGQTVAGSTLEVSLA 164
TV G EV A
Sbjct: 61 VIQKYHTVNGHNCEVRKA 78
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 53.3 bits (127), Expect = 4e-10
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 7/82 (8%)
Query: 98 LYVRNL-----TQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDRQEAITAMNELN 150
L ++ T K + F Y + + ++F + A A L+
Sbjct: 8 LIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLH 67
Query: 151 GQTVAGSTLEVSLAKPPSDKKK 172
G +++ A+
Sbjct: 68 KTEFLGKEMKLYFAQTLHIGSS 89
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 52.5 bits (125), Expect = 8e-10
Identities = 14/103 (13%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 95 VKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI--KDYAFVHFEDR-QEAITAMNELNG 151
+ + +L E L F +G ++ + + + F+++ +EA+ + N
Sbjct: 11 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANN 70
Query: 152 QTVAGSTLEVSLAKPPSDKKK--KEEILRNRERRMMQMMQGRG 192
+ EV+ + +K ++I+ +++ + + + +G
Sbjct: 71 GNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNK-WKSKG 112
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 52.0 bits (124), Expect = 9e-10
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--KRIKDYAFVHFEDRQEAITAMNELN 150
++ V+ L + +L E+ G V+ + K Y+F + +E+ A LN
Sbjct: 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLN 77
Query: 151 GQTV 154
G+ V
Sbjct: 78 GKEV 81
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 52.1 bits (124), Expect = 1e-09
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRV-ERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAG 156
+ V L + + LK+ + G V + V + +++ A+ +L+
Sbjct: 18 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRS 77
Query: 157 STLEVSLAKPPSDKKK 172
E S + ++
Sbjct: 78 HEGETSYIRVYPERSS 93
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 53.5 bits (127), Expect = 1e-09
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 92 MSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAI 143
VK ++V + + E L++ FEQYG++E ++ + D +AFV F+D
Sbjct: 94 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 153
Query: 144 TAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
+ TV G EV A +
Sbjct: 154 KIV-IQKYHTVNGHNCEVRKALSKQEMAS 181
Score = 44.6 bits (104), Expect = 2e-06
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 85 EEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFVHF 136
+EP+ +++ L++ L+ T+E L+ FEQ+G + KR + + FV +
Sbjct: 1 KEPE-----QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 55
Query: 137 EDRQEAITAMNELNGQ 152
+E AMN +
Sbjct: 56 ATVEEVDAAMNARPHK 71
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 52.2 bits (124), Expect = 2e-09
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFV 134
Q P+ + + L V + E +L++ FE+YG +E VK + D FV
Sbjct: 33 TQMNPEPDVLRN---LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFV 89
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDK 170
F+ A A+ LNG + L+V+LA +
Sbjct: 90 KFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.9 bits (121), Expect = 3e-09
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMN 147
KVLY++NL+ TE L F ++ + AF+ F +++ A A++
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 148 ELNGQTVAGSTLEVSLAKPPSDK 170
+NG + G L + K +
Sbjct: 79 LVNGYKLYGKILVIEFGKNKKQR 101
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.1 bits (119), Expect = 6e-09
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 17/98 (17%)
Query: 83 PQEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERV--------KRIKDYAFV 134
P+ P T ++ NL TEE +KE F +R+K + +
Sbjct: 11 PKSPPYT--------AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYA 62
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
FED ++A+ LN +++ + V +A DK
Sbjct: 63 EFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDKDS 99
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 49.4 bits (117), Expect = 8e-09
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMN 147
K +++RNL+ EE L E +Q+G ++ V+ + AF F ++ A +
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 68
Query: 148 ELN------GQTVAGSTLEVSLAKPPSD 169
+ G + G L+V LA +
Sbjct: 69 AASLEAEGGGLKLDGRQLKVDLAVTRDE 96
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 47.8 bits (113), Expect = 2e-08
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKDY--------AFVHFEDRQEAITAMNEL 149
LY+R L T++ L + + YG++ K I D FV F+ A A+ L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 150 NGQTVAGSTL 159
V
Sbjct: 61 KASGVQAQMA 70
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 48.2 bits (114), Expect = 2e-08
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 14/81 (17%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVK-------------RIKDYAFVHFEDRQEAIT 144
LYV N+ TEE + + F R+ + + K++AF+ F E
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 145 AMNELNGQTVAGSTLEVSLAK 165
AM +G G +L++
Sbjct: 64 AMA-FDGIIFQGQSLKIRRPH 83
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 48.2 bits (114), Expect = 3e-08
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 93 SKVKVLYVRNLTQYCTEEKLKEAFEQYGRV--------ERVKRIKDYAFVHFEDRQEAIT 144
+ ++V L + T+ L++ FE +G + + + + Y FV DR A
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
Query: 145 AMNELNGQTVAGSTLEVSLAKPPSDKKK 172
A + N + G V+LA + +
Sbjct: 68 ACKDPNP-IIDGRKANVNLAYLGAKPRS 94
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 47.6 bits (112), Expect = 3e-08
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVER-VKRIKDYAFVHFEDRQEAITAMNELNGQTVAG 156
+ +R L T +++ + Y V + K AFV + ++A A+N + +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRE 60
Query: 157 STLEVSLAKPPS 168
L V L +
Sbjct: 61 RELSVQLQPTDA 72
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 47.4 bits (112), Expect = 6e-08
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERV------KRIKDYAFVHFEDRQEAITAMNELN 150
+++R L TE + F + R+ A V F ++A+ AM +
Sbjct: 17 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKD 75
Query: 151 GQTVAGSTLEVSLAKPPSDKKK 172
+ +E+ L
Sbjct: 76 KANMQHRYVELFLNSTAGTSGS 97
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 46.7 bits (110), Expect = 7e-08
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 96 KVLYVRNLTQYCTEEK-LKEAFEQYGRVERVK---------RIKDYAFVHFEDRQEAITA 145
+ + +RNL+ +E L+E+FE +G +E++ AF+ FE++ A A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 146 MNELNGQTVAGSTLEVSLAKP 166
+ ++N + + VSLA
Sbjct: 65 L-QMNRSLLGNREISVSLADK 84
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 46.7 bits (110), Expect = 7e-08
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 97 VLYVRNLTQYCTEEKLKEAFE---QYGRVERVKRIKD-----------YAFVHFEDRQEA 142
+++V L+Q + ++ + E ++G++ +V A+V + ++A
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 143 ITAMNELNGQTVAGSTLEVS 162
+ A+ +N V G TL+ S
Sbjct: 70 LRAIQCVNNVVVDGRTLKAS 89
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 45.9 bits (108), Expect = 2e-07
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 84 QEEPDTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVK-------RIKDYAFVHF 136
Q+E D LY+ NL E++L+ + +G+V + + F
Sbjct: 13 QQEQDPTN------LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARM 66
Query: 137 EDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
E ++ + NG+ + + +P
Sbjct: 67 ESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 96
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 44.8 bits (105), Expect = 3e-07
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVE---RVKRIKDYAFVHFEDRQEAITAMNELNGQ 152
++L++ NL + E L F Q+ + V D AFV F ++ A L G
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGF 68
Query: 153 TV-AGSTLEVSLAK 165
+ ++++ AK
Sbjct: 69 KITPTHAMKITFAK 82
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 44.3 bits (104), Expect = 5e-07
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 94 KVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-------KDYAFVHFEDRQEAITAM 146
K + +Y++ T + +KE E G+V ++ K FV F+ + A +
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV 64
Query: 147 NELNGQTVAGSTLEVSLAK 165
E GQ + L +
Sbjct: 65 -ETPGQKYKETDLLILFKD 82
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 44.8 bits (105), Expect = 5e-07
Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 88 DTETMSKVKVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDR 139
+ + S ++ N+ T+ + + E E + A V F++
Sbjct: 1 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNE 60
Query: 140 QEAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
+A + L+ + + G V + + EI +N +
Sbjct: 61 DDARKSE-RLHRKKLNGREAFVHVVTL----EDMREIEKNPPAQ 99
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 44.9 bits (105), Expect = 5e-07
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQT 153
V+ +NL +++E F ++G + RV + A V F + EA A L
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSK 70
Query: 154 VAGSTLEVSLAKPPSDKKKKEEILRNRERR 183
L + A ++ E+
Sbjct: 71 FHHVPLYLEWAPIGVFGAAPQKKDSQHEQP 100
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 44.1 bits (103), Expect = 6e-07
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI-KDYAFVHFEDRQEAITAMNELNGQTVAG 156
+ V L + + LK+ + G V V F +++ A+ +L+
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 62
Query: 157 STLEVSLAKPPSDKKKKEEILRNR 180
E + + D + R+R
Sbjct: 63 HEGETAYIRVKVDGPRSPSYGRSR 86
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 44.2 bits (103), Expect = 7e-07
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVE-------RVKRIKDYAFVHFEDRQEAITAMNELN 150
L++ NL + +LK A + R + + +V FE ++ A+ L
Sbjct: 16 LFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT 74
Query: 151 GQTVAGSTLEVSLAKP 166
G V G+ +++ K
Sbjct: 75 GLKVFGNEIKLEKPKG 90
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 41.4 bits (96), Expect = 6e-06
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 96 KVLYVRNLTQYCTEEKLKEAFEQYGRV--ERVKRIKDYAFVHFEDRQEAITAMNE--LNG 151
+VL++R L TE ++ +G+V + + K+ AF+ + AIT +N
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVT 68
Query: 152 QTVAGSTLEVSLAKP 166
+ + + +
Sbjct: 69 PHLRNQPIYIQYSNH 83
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 41.0 bits (95), Expect = 6e-06
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 98 LYVRNLTQYCTEEKLKEAFEQYGRVERVKRI------KDYAFVHFEDRQEAITAMNELNG 151
+ V+NL + + K+ + F+ G + V +A + F A
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDG-ALAAITKTH 61
Query: 152 QTVAGSTLEVSLA 164
+ V + + VS
Sbjct: 62 KVVGQNEIIVSHL 74
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.6 bits (94), Expect = 2e-05
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 97 VLYVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--------YAFVHFEDRQEAITAMNE 148
+ +R L C++E++ + F V + AFV F ++ A A+
Sbjct: 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK- 75
Query: 149 LNGQTVAGSTLEVSLAKPPSDKK 171
+ + + +E+ + +
Sbjct: 76 KHKERIGHRYIEIFKSSRAEVRT 98
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.4 bits (94), Expect = 2e-05
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 20/91 (21%)
Query: 96 KVLYVRNL----------TQYCTEEKLKEAFEQYGRVERVKRIKD----------YAFVH 135
+VL + N+ E +++ +YG V+ ++ + FV
Sbjct: 5 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 64
Query: 136 FEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
F + AM L G+ A + P
Sbjct: 65 FTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 95
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 39.5 bits (92), Expect = 2e-05
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 99 YVRNLTQYCTEEKLKEAFEQYGRVERVKRIKD--YAFVHFEDRQEAITAMNELNGQTVAG 156
V Q L + F QYG + + + + ++ + +A A+ +G+
Sbjct: 8 TVFGFPQASASYILLQ-FAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFGE 65
Query: 157 STLEVSLAKPPSDK 170
S + KP DK
Sbjct: 66 SIMIG--VKPCIDK 77
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 38.3 bits (89), Expect = 7e-05
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 112 LKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKP 166
L + YG + V+ + V F D A++ ++ ++G V G +++S
Sbjct: 41 LMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPSS 94
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 34.2 bits (77), Expect = 0.002
Identities = 14/95 (14%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 83 PQEEPDTETMSKV---KVLYVRNLTQY-CTEEKLKEAFEQYGRVERVKRIKD----YAFV 134
P+ +PD + K +V+++ NL ++ + + E YG+++ ++ + +
Sbjct: 3 PEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEM 62
Query: 135 HFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSD 169
+ A+ G ++V L++
Sbjct: 63 ETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 97
>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens)
[TaxId: 9606]}
Length = 73
Score = 28.2 bits (63), Expect = 0.18
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 110 EKLKEAFEQYGRVERVK-----RIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLA 164
+ L+EAF ++G+V+ V+ + A V E+ Q+AI A+N L+ + + VSLA
Sbjct: 11 QLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 70
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 27.1 bits (60), Expect = 2.0
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 40 TPDYTKLLEYGLDKRIAGKLDDI 62
+ DY K+L G + I + +
Sbjct: 165 SVDYGKVLRVGFNGIINEAKEQL 187
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.9 bits (58), Expect = 2.2
Identities = 16/148 (10%), Positives = 42/148 (28%)
Query: 53 KRIAGKLDDIFKTGKHLLSRGCDIIVDWADPQEEPDTETMSKVKVLYVRNLTQYCTEEKL 112
+ L + GK + + + ++ + + + + +
Sbjct: 75 RSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSV 134
Query: 113 KEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPSDKKK 172
F+QY V+R + E + + V +
Sbjct: 135 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVIL 194
Query: 173 KEEILRNRERRMMQMMQGRGGPGPSGAH 200
+ + R RR +++++ RG G +
Sbjct: 195 RNVLEGERRRRTLEILKLRGTSHMKGEY 222
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
{Clostridium perfringens [TaxId: 1502]}
Length = 426
Score = 26.7 bits (59), Expect = 2.8
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 32/114 (28%)
Query: 110 EKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAMNELNGQTVAGSTLEVSLAKPPS- 168
E++ A E++G+V + + YA+ E +G G+ + A PS
Sbjct: 263 EEIDNAIEKHGKVYKEGFGEVYAY--------------ETDG---MGNYNFMDDANVPSL 305
Query: 169 -------DKKKKEEILRNRERRMM------QMMQGRGGPGPSGAHAPLLTGPPM 209
K ++E+ +N R+ + +G+ G H P +
Sbjct: 306 LSIPYLEYKGIEDEVYQN-TRKFILSKNNRFFFEGKAAKGIGSPHTPDQYIWHI 358
>g1sse.1 g.78.1.1 (A:,B:) YAP1 redox domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 121
Score = 25.7 bits (56), Expect = 2.9
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 130 DYAFVHFEDRQ--EAITAMNELNGQTVAGSTLEVSLAKPPSDKKKKEEILRNRERRMM 185
D+ F + D Q E + MN++ G S +D +++ ++E ++
Sbjct: 10 DFNFENQFDEQVSEFCSKMNQVCGTRNGSSLQNADKINNGNDNDNDNDVVPSKEGSLL 67
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo
sapiens) [TaxId: 9606]}
Length = 76
Score = 24.3 bits (53), Expect = 4.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 50 GLDKRIAGKLDDIFKTGK 67
G+ KR+A K+ +I ++G
Sbjct: 53 GIGKRMAEKIIEILESGH 70
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 24.6 bits (53), Expect = 5.0
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 104 TQYC---TEEKLKEAFEQYGRVERVKRIKDYAFVHFEDRQEAITAM 146
T Y TEE + + G V VK + F+ DR +
Sbjct: 4 THYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQIT 49
>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
[TaxId: 562]}
Length = 759
Score = 25.5 bits (56), Expect = 6.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 41 PDYTKLLEYGLDKRIAGKLDDI 62
DY ++ YG+D + KL
Sbjct: 179 GDYRRVALYGIDYLMKDKLAQF 200
>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA
reductase {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 24.7 bits (54), Expect = 6.9
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 110 EKLKEAFEQYGRVERVKRIK-----DYAFVHFEDRQEAITAMNELN 150
+KEAF+ R R++++ ++ F+ R MN ++
Sbjct: 30 AVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMIS 75
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 25.3 bits (55), Expect = 7.0
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 164 AKPPSDKKKKEEILRNRERRMMQMMQ 189
+ ++E++RN+ R + +M +
Sbjct: 370 GFDGATAAARKEVIRNKIRAIGKMAR 395
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 24.2 bits (52), Expect = 7.2
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 104 TQYCTEEKLKEAFEQ---YGRVERVKRIKDYAFVHFEDRQEAITAMNE 148
T+YC + +L +Q G V R + + F+ DR+ + +
Sbjct: 3 TEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFD 50
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 23.6 bits (51), Expect = 9.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 50 GLDKRIAGKLDDIFKTGK 67
G+ +IA K+D+ TGK
Sbjct: 55 GVGTKIAEKIDEFLATGK 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 852,771
Number of extensions: 40760
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 103
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.8 bits)