BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11882
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 22/97 (22%)
Query: 28 RPNNK--FGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------------HF 65
+PN + GENI+M S +A + A K+W+ E+ H+
Sbjct: 76 QPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHY 135
Query: 66 TQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQ 102
TQ+VW+ + KLG + + VV Y P GN G+
Sbjct: 136 TQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGK 172
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 25/102 (24%)
Query: 24 HLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-------------------- 63
H + RP GENI+ S KF +A K A + W++E++
Sbjct: 297 HGEDRPG--LGENIYKTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNM 354
Query: 64 ---HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQ 102
H+TQ+ W ++ KLG + N V Y P GNY G
Sbjct: 355 QIGHYTQMAWDTTYKLGCAVVFCNDFTFGVCQYGPGGNYMGH 396
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 61 EIRHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQ 102
+ RH+TQVVW++S +LG G AR NG + NYDP GN+ GQ
Sbjct: 90 KCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQ 132
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 29/103 (28%)
Query: 21 RGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFT 66
+ H H GENIW GS F+ V +A+ +WYDEI+ H+T
Sbjct: 69 KPPHKLHPNFTSLGENIWTGSVPIFS----VSSAITNWYDEIQDYDFKTRICKKVCGHYT 124
Query: 67 QVVWKSSSKLGVGI----------ARKNGHILVVANYDPPGNY 99
QVVW S K+G + A NG + NY P GNY
Sbjct: 125 QVVWADSYKVGCAVQFCPKVSGFDALSNGAHF-ICNYGPGGNY 166
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 25/103 (24%)
Query: 25 LQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFTQ 67
L+H P + + GEN+ S Y T +E WY EI+ HFT
Sbjct: 52 LKHSPESSRGQCGENLAWAS-YDQTGKEVADR----WYSEIKNYNFQQPGFTSGTGHFTA 106
Query: 68 VVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY--QGQYANNV 107
+VWK++ K+GVG A +G VVA Y P GN +G + NV
Sbjct: 107 MVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENV 149
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 25/103 (24%)
Query: 25 LQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFTQ 67
L+H P + + GEN+ S Y T +E WY EI+ HFT
Sbjct: 52 LKHSPESSRGQXGENLAWAS-YDQTGKEVADR----WYSEIKNYNFQQPGFTSGTGHFTA 106
Query: 68 VVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY--QGQYANNV 107
+VWK++ K+GVG A +G VVA Y P GN +G + NV
Sbjct: 107 MVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENV 149
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 29/104 (27%)
Query: 25 LQHRPNNK-------FGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-------------- 63
H P NK GENI+M S V++WYDEI+
Sbjct: 50 FAHSPPNKRTVGKLRCGENIFMSS-----QPFPWSGVVQAWYDEIKNFVYGIGAKPPGSV 104
Query: 64 --HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQYA 104
H+TQVVW S +G A+ + L V Y P GN +G A
Sbjct: 105 IGHYTQVVWYKSYLIGCASAKCSSSKYLYVCQYCPAGNIRGSIA 148
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 22/90 (24%)
Query: 32 KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR----------------HFTQVVWKSSSK 75
+ GENI+M S V++WYDEI+ H+TQVVW S
Sbjct: 63 RCGENIFMSS-----QPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHL 117
Query: 76 LGVGIAR-KNGHILVVANYDPPGNYQGQYA 104
+G A+ + L V Y P GN +G A
Sbjct: 118 IGCASAKCSSSKYLYVCQYCPAGNIRGSIA 147
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 31/111 (27%)
Query: 20 ARGGHLQHRPNN-------KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------- 63
A L H P+N + GE+I+M S + E + W+DE +
Sbjct: 53 ANTCSLNHSPDNLRVLEGIQCGESIYMSSNARTWTE-----IIHLWHDEYKNFVYGVGAS 107
Query: 64 -------HFTQVVWKSSSKLGVGIARKNGHI---LVVANYDPPGNYQGQYA 104
H+TQ+VW + + G ++ V Y P GN+QG+ A
Sbjct: 108 PPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTA 158
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 31/111 (27%)
Query: 20 ARGGHLQHRPNN-------KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------- 63
A L H P+N + GE+I+M S + E + W+DE +
Sbjct: 53 ANTCSLNHSPDNLRVLEGIQCGESIYMSSNARTWTE-----IIHLWHDEYKNFVYGVGAN 107
Query: 64 -------HFTQVVWKSSSKLGVGIARKNGHI---LVVANYDPPGNYQGQYA 104
H+TQ+VW + + G ++ V Y P GN+QG+ A
Sbjct: 108 PPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTA 158
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 26/93 (27%)
Query: 32 KFGENIWMGS-GYKFTDEEAVKNAVKSWYDEIR----------------HFTQVVWKSSS 74
K GENI+M K+TD + +W+DE + H+TQ+VW S
Sbjct: 72 KCGENIYMSPYPMKWTD------IIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSY 125
Query: 75 KLGVGIARKNG---HILVVANYDPPGNYQGQYA 104
++G A V Y P GN+ G+ A
Sbjct: 126 RIGCAAAYCPSSPYSYFFVCQYCPAGNFIGKTA 158
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 24/103 (23%)
Query: 23 GHLQHRPNNKF--GENIWMGSGYKFTDEEAVKNAVKSWYDEIR----------------- 63
GH R K+ G+N+ + ++ VK VK W DE++
Sbjct: 102 GHDTCRDVAKYQVGQNVALTGSTAAKYDDPVK-LVKMWEDEVKDYNPKKKFSGNDFLKTG 160
Query: 64 HFTQVVWKSSSKLGVG----IARKNGHILVVANYDPPGNYQGQ 102
H+TQ+VW ++ ++G G I K +V NY P GN++ +
Sbjct: 161 HYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNE 203
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 51 VKNAVKSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNVR 108
+ N+V+ + H+T V ++ + G G+A N HI VV +D + A N+R
Sbjct: 173 ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR 230
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 61 EIRHFTQVVWKSSSKLGVG-IARK-----NGHILVVANYDPPGNYQG 101
++ H+TQ+VW ++K+G G I K H L V NY P GN G
Sbjct: 159 KVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYL-VCNYGPAGNVLG 204
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 26/94 (27%)
Query: 32 KFGENIWMGS-GYKFTDEEAVKNAVKSWYDE----------------IRHFTQVVWKSSS 74
K GENI+M + K+TD + +W+ E I H+TQ+VW S
Sbjct: 72 KCGENIYMATYPAKWTD------IIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSY 125
Query: 75 KLGVGIA---RKNGHILVVANYDPPGNYQGQYAN 105
+ G A V Y P GN G+ A
Sbjct: 126 RAGCAAAYCPSSKYSYFYVCQYCPAGNIIGKTAT 159
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 203 QHFTHQFFKTSGKMGPGFTKALGH 226
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 179 QHFTHQFFKTSGKMGPGFTKALGH 202
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 203 QHFTHQFFKTSGKMGPGFTKALGH 226
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 179 QHFTHQFFKTSGKMGPGFTKALGH 202
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 183 QHFTHQFFKTSGKMGPGFTKALGH 206
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 171 QHFTHQFFKTSGKMGPGFTKALGH 194
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 172 QHFTHQFFKTSGKMGPGFTKALGH 195
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 172 QHFTHQFFKTSGKMGPGFTKALGH 195
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 172 QHFTHQFFKTSGKMGPGFTKALGH 195
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 171 QHFTHQFFKTSGKMGPGFTKALGH 194
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 RHFTQVVWKSSSKLGVGIARKNGH 86
+HFT +K+S K+G G + GH
Sbjct: 171 QHFTHQFFKTSGKMGPGFTKALGH 194
>pdb|2SSP|E Chain E, Leucine-272-Alanine Uracil-Dna Glycosylase Bound To Abasic
Site-Containing Dna
Length = 223
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 49 EAVKNAVKSWYDEIRH-FTQVVWKS-SSKLGVGIARKNGHILVVANYDPPGNYQGQY 103
E +AV SW ++ + ++W S + K G I RK H+L A+ P Y+G +
Sbjct: 142 EQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPASVYRGFF 198
>pdb|4SKN|E Chain E, A Nucleotide-flipping Mechanism From The Structure Of
Human Uracil-dna Glycosylase Bound To Dna
Length = 223
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 49 EAVKNAVKSWYDEIRH-FTQVVWKS-SSKLGVGIARKNGHILVVANYDPPGNYQGQY 103
E +AV SW ++ + ++W S + K G I RK H+L A+ P Y+G +
Sbjct: 142 EQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPRSVYRGFF 198
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase
D183gK302R MUTANT
Length = 223
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 49 EAVKNAVKSWYDEIRH-FTQVVWKS-SSKLGVGIARKNGHILVVANYDPPGNYQGQY 103
E +AV SW ++ + ++W S + K G I RK H+L A+ P Y+G +
Sbjct: 142 EQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFF 198
>pdb|1YUO|A Chain A, Optimisation Of The Surface Electrostatics As A Strategy
For Cold Adaptation Of Uracil-Dna N-Glycosylase
(Ung)from Atlantic Cod (Gadus Morhua)
Length = 223
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 49 EAVKNAVKSWYDEIRH-FTQVVWKS-SSKLGVGIARKNGHILVVANYDPPGNYQGQY 103
E +AV SW ++ + ++W S + K G I RK H+L A+ P Y+G +
Sbjct: 142 EQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFF 198
>pdb|1UGH|E Chain E, Crystal Structure Of Human Uracil-Dna Glycosylase In
Complex With A Protein Inhibitor: Protein Mimicry Of Dna
pdb|1SSP|E Chain E, Wild-Type Uracil-Dna Glycosylase Bound To
Uracil-Containing Dna
pdb|1EMH|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase Bound To
Uncleaved Substrate-Containing Dna
pdb|1EMJ|A Chain A, Uracil-Dna Glycosylase Bound To Dna Containing A 4'-Thio-
2'deoxyuridine Analog Product
pdb|1Q3F|A Chain A, Uracil Dna Glycosylase Bound To A Cationic 1-Aza-2'-
Deoxyribose-Contianing Dna
pdb|2HXM|A Chain A, Complex Of Ung2 And A Small Molecule Synthetic Inhibitor
pdb|1AKZ|A Chain A, Human Uracil-Dna Glycosylase
pdb|2OXM|A Chain A, Crystal Structure Of A Ung2MODIFIED DNA COMPLEX THAT
Represent A Stabilized Short-Lived Extrahelical State In
Ezymatic Dna Base Flipping
pdb|2OYT|A Chain A, Crystal Structure Of Ung2DNA(TM)
pdb|3FCF|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCI|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCK|B Chain B, Complex Of Ung2 And A Fragment-Based Design Inhibitor
pdb|3FCL|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCL|B Chain B, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
Length = 223
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 49 EAVKNAVKSWYDEIRH-FTQVVWKS-SSKLGVGIARKNGHILVVANYDPPGNYQGQY 103
E +AV SW ++ + ++W S + K G I RK H+L A+ P Y+G +
Sbjct: 142 EQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFF 198
>pdb|1DE4|C Chain C, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|F Chain F, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|I Chain I, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|3KAS|A Chain A, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 640
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 56 KSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNY 99
K W D+ HF ++ K S++ V I KNG ++ + + PG Y
Sbjct: 60 KVWRDQ--HFVKIQVKDSAQNSVIIVDKNGRLVYLV--ENPGGY 99
>pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|B Chain B, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|C Chain C, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|D Chain D, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|E Chain E, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|F Chain F, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|G Chain G, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|H Chain H, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1SUV|A Chain A, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|B Chain B, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|2NSU|A Chain A, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
pdb|2NSU|B Chain B, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
Length = 639
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 56 KSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNY 99
K W D+ HF ++ K S++ V I KNG ++ + + PG Y
Sbjct: 59 KVWRDQ--HFVKIQVKDSAQNSVIIVDKNGRLVYLV--ENPGGY 98
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 72 SSSKLGVGIARKNGHILVVANYDPPGNYQG 101
+ SK+ + A G LV+AN DP Y+G
Sbjct: 174 NGSKMWISSAEHAGLFLVMANVDPTIGYKG 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,499,837
Number of Sequences: 62578
Number of extensions: 129653
Number of successful extensions: 426
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 42
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)