Query psy11882
Match_columns 110
No_of_seqs 125 out of 1024
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:22:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 8.4E-29 1.8E-33 161.4 11.2 94 2-104 24-135 (136)
2 cd05382 SCP_GAPR-1_like SCP_GA 99.9 3.6E-27 7.7E-32 152.6 9.5 90 2-99 26-132 (132)
3 cd05384 SCP_PRY1_like SCP_PRY1 99.9 7.8E-27 1.7E-31 150.9 10.4 88 2-101 26-129 (129)
4 smart00198 SCP SCP / Tpx-1 / A 99.9 6.4E-25 1.4E-29 143.9 9.0 87 2-96 37-144 (144)
5 cd05385 SCP_GLIPR-1_like SCP_G 99.9 7.4E-25 1.6E-29 144.2 8.6 83 2-96 31-144 (144)
6 KOG3017|consensus 99.9 4.8E-25 1E-29 154.2 7.7 101 2-110 70-203 (225)
7 cd05383 SCP_CRISP SCP_CRISP: S 99.9 1.3E-24 2.9E-29 142.1 8.1 82 2-96 31-138 (138)
8 cd05559 SCP_HrTT-1 SCP_HrTT-1: 99.9 2.1E-23 4.5E-28 136.2 8.1 81 2-94 29-136 (136)
9 cd05380 SCP_euk SCP_euk: SCP-l 99.9 1.6E-22 3.4E-27 131.8 8.7 85 2-94 36-144 (144)
10 cd00168 SCP SCP: SCP-like extr 99.9 5E-22 1.1E-26 127.1 9.3 80 2-94 25-122 (122)
11 PF00188 CAP: Cysteine-rich se 99.6 4.4E-14 9.5E-19 87.3 9.1 83 2-93 21-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.1 4.2E-10 9.1E-15 72.6 8.8 81 2-93 28-125 (127)
13 cd05379 SCP_bacterial SCP_bact 99.1 1.3E-09 2.8E-14 68.6 7.9 81 2-93 24-121 (122)
14 COG2340 Uncharacterized protei 96.6 0.0074 1.6E-07 42.0 5.8 73 2-84 104-192 (207)
15 KOG0286|consensus 73.9 3.5 7.7E-05 30.7 2.7 34 67-100 79-112 (343)
16 PF07592 DDE_Tnp_ISAZ013: Rhod 43.3 41 0.00088 25.2 3.7 30 33-62 144-174 (311)
17 PF12197 lci: Bacillus cereus 35.5 22 0.00047 18.9 0.9 18 89-106 2-19 (45)
18 PF11216 DUF3012: Protein of u 30.1 43 0.00094 16.4 1.4 11 5-15 20-30 (32)
19 PF03290 Peptidase_C57: Vaccin 25.8 45 0.00098 25.8 1.6 19 86-104 252-270 (423)
20 PF11952 DUF3469: Protein of u 24.4 11 0.00023 22.8 -1.6 16 66-81 39-54 (87)
21 PF13983 YsaB: YsaB-like lipop 24.0 51 0.0011 19.2 1.2 14 87-100 59-72 (77)
22 PF08693 SKG6: Transmembrane a 22.2 81 0.0017 16.2 1.6 12 71-82 8-19 (40)
23 TIGR02608 delta_60_rpt delta-6 21.0 1.2E+02 0.0027 16.5 2.4 20 87-106 28-47 (55)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.96 E-value=8.4e-29 Score=161.38 Aligned_cols=94 Identities=36% Similarity=0.725 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh----------------hh
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR----------------HF 65 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~----------------hf 65 (110)
++|++.||.||++| +.+|.+.|+.. .+||||++......+ +.++|+.|++|.. ||
T Consensus 24 ~~La~~A~~~a~~~----~~~c~~~~~~~-~~GeNi~~~~~~~~~----~~~~v~~W~~e~~~y~~~~~~~~~~~~~~hf 94 (136)
T cd05381 24 DTLAAYAQRYANQR----RGDCALVHSNG-PYGENLFWGSGGNWS----AADAVASWVSEKKYYDYDSNTCAAGKMCGHY 94 (136)
T ss_pred HHHHHHHHHHHHHh----cCCCCcccCCC-CCCceEEEecCCCCC----HHHHHHHHHhccccCCCCCCCcCCCccchHH
Confidence 58999999999998 67778878764 499999976644445 7899999998865 99
Q ss_pred hhhhhcccceEEEEEEEeCC--CEEEEEEecCCCCCcCccc
Q psy11882 66 TQVVWKSSSKLGVGIARKNG--HILVVANYDPPGNYQGQYA 104 (110)
Q Consensus 66 tqmvW~~t~~vGCa~~~c~~--~~~vVC~Y~P~GN~~g~~~ 104 (110)
|||||++|++||||++.|.. +.+|||+|+|+||+.|+.+
T Consensus 95 tq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~ 135 (136)
T cd05381 95 TQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRP 135 (136)
T ss_pred HHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCC
Confidence 99999999999999999975 5899999999999999865
No 2
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=99.95 E-value=3.6e-27 Score=152.57 Aligned_cols=90 Identities=54% Similarity=0.924 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeC--CCCChHHHHHHHHHHHHhchh--------------hh
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSG--YKFTDEEAVKNAVKSWYDEIR--------------HF 65 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~--~~~~~~~~~~~~v~~W~~e~~--------------hf 65 (110)
++|++.||.||++| ...+.+.|+....+|||+++... ...+ +..+|+.|++|.. ||
T Consensus 26 ~~La~~A~~~a~~c----~~~~~~~h~~~~~~GeN~~~~~~~~~~~~----~~~~v~~W~~e~~~y~~~~~~~~~~~gh~ 97 (132)
T cd05382 26 KELAKEAQKWAEKL----ASSGKLQHSSPSGYGENLAYASGSGPDLT----GEEAVDSWYNEIKKYDFNKPGFSSKTGHF 97 (132)
T ss_pred HHHHHHHHHHHHHh----hhcCceeCCCCCCCCceeEEecCCCCCCC----HHHHHHHHHhccccCCCCCCCCCCCCCCe
Confidence 58999999999999 66666888876679999997664 2345 8999999998853 99
Q ss_pred hhhhhcccceEEEEEEEeC-CCEEEEEEecCCCCC
Q psy11882 66 TQVVWKSSSKLGVGIARKN-GHILVVANYDPPGNY 99 (110)
Q Consensus 66 tqmvW~~t~~vGCa~~~c~-~~~~vVC~Y~P~GN~ 99 (110)
|||||++|++||||++.|. ...++||+|+|+||+
T Consensus 98 tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 98 TQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV 132 (132)
T ss_pred EEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence 9999999999999999998 558999999999996
No 3
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=99.94 E-value=7.8e-27 Score=150.88 Aligned_cols=88 Identities=40% Similarity=0.721 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh--------------hhhh
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------HFTQ 67 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~--------------hftq 67 (110)
++|++.||.||++| ...+.+.|+.. .+|||++.... + +..+|+.|++|.. ||||
T Consensus 26 ~~La~~A~~~a~~c----~~~~~~~~~~~-~~geNi~~~~~---~----~~~~v~~W~~e~~~y~~~~~~~~~~~~h~tq 93 (129)
T cd05384 26 NTLAEYAQDYANSY----DCSGNLAHSGG-PYGENLAAGYP---S----GTSAVDAWYDEIEDYDYSNPGFSEATGHFTQ 93 (129)
T ss_pred HHHHHHHHHHHHHh----ccCCceecCCC-CCCcEEEEecC---C----HHHHHHHHHhhhhhCCCCCCCCCCcccchhh
Confidence 58999999999999 65566788765 68999986432 4 7899999999865 9999
Q ss_pred hhhcccceEEEEEEEeCC--CEEEEEEecCCCCCcC
Q psy11882 68 VVWKSSSKLGVGIARKNG--HILVVANYDPPGNYQG 101 (110)
Q Consensus 68 mvW~~t~~vGCa~~~c~~--~~~vVC~Y~P~GN~~g 101 (110)
|||++|++||||++.|.+ ..++||+|+|+||+.|
T Consensus 94 mvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 94 LVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred hhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 999999999999999986 5889999999999875
No 4
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=99.92 E-value=6.4e-25 Score=143.86 Aligned_cols=87 Identities=37% Similarity=0.637 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh-----------------h
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR-----------------H 64 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~-----------------h 64 (110)
++||+.||.||++| .+.|+....+|||+++......+....+..+|+.||+|.. |
T Consensus 37 ~~La~~A~~~a~~C--------~~~~~~~~~~GeNi~~~~~~~~~~~~~~~~av~~W~~e~~~y~~~~~~~~~~~~~~~h 108 (144)
T smart00198 37 CELASSAQNWANQC--------PFGHSTPRGYGENLAWWSSSTDLPITYASAAVQLWYDEFQDYGYSSNTCKDTNGKIGH 108 (144)
T ss_pred HHHHHHHHHHHHhC--------CCcCCCcCCcCcceEEecccCcccchhHHHHHHHHHHHHHHcCCCCCccccCccchhH
Confidence 58999999999999 7778876689999997664322344568999999998875 9
Q ss_pred hhhhhhcccceEEEEEEEeCCC----EEEEEEecCC
Q psy11882 65 FTQVVWKSSSKLGVGIARKNGH----ILVVANYDPP 96 (110)
Q Consensus 65 ftqmvW~~t~~vGCa~~~c~~~----~~vVC~Y~P~ 96 (110)
||||||++|++||||++.|.++ .++||+|+|+
T Consensus 109 ftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 109 YTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred HHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 9999999999999999999764 6999999995
No 5
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.92 E-value=7.4e-25 Score=144.22 Aligned_cols=83 Identities=48% Similarity=0.825 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCC-----------CCCccceEEEEeCCCCChHHHHHHHHHHHHhchh-------
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRP-----------NNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR------- 63 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~-----------~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~------- 63 (110)
++||+.||.||++| .+.|+. ...+||||++.....++ +.++|+.||+|..
T Consensus 31 ~~La~~Aq~~a~~C--------~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~~~----~~~av~~W~~e~~~y~~~~~ 98 (144)
T cd05385 31 AALAKTARAWAKKC--------KFKHNIYLGKRYKCHPKFTSVGENIWLGSIYIFS----PKNAVTSWYNEGKFYDFDTN 98 (144)
T ss_pred HHHHHHHHHHHhcC--------CCCCCchhhcccccccccCcccceeeecccCCCC----HHHHHHHHHHHHHhCCCCCC
Confidence 58999999999999 555443 24689999865533455 8899999999876
Q ss_pred -------hhhhhhhcccceEEEEEEEeCCC------EEEEEEecCC
Q psy11882 64 -------HFTQVVWKSSSKLGVGIARKNGH------ILVVANYDPP 96 (110)
Q Consensus 64 -------hftqmvW~~t~~vGCa~~~c~~~------~~vVC~Y~P~ 96 (110)
|||||||++|++||||++.|..+ .+|||+|+|+
T Consensus 99 ~~~~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 99 SCSRVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred CCCCcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 99999999999999999999642 6899999994
No 6
>KOG3017|consensus
Probab=99.92 E-value=4.8e-25 Score=154.18 Aligned_cols=101 Identities=33% Similarity=0.593 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCC-----CCCccceEEEEeCC--CCChHHHHHHHHHHHHhchh-----------
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRP-----NNKFGENIWMGSGY--KFTDEEAVKNAVKSWYDEIR----------- 63 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~-----~~~~Gen~~~~~~~--~~~~~~~~~~~v~~W~~e~~----------- 63 (110)
++||..||.||++| .+.|+. ...+||||++.+.. ..+.......+++.|+.|..
T Consensus 70 ~~La~~Aq~~a~~c--------~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~~a~~~w~~e~~~~~~~~~~~~~ 141 (225)
T KOG3017|consen 70 DELAALAQNWANTC--------PFGHDKCVHTSFGPYGENLAWGWSSNPPLSLDTSGALAVEAWESEFQEYDWSSNTCSS 141 (225)
T ss_pred HHHHHHHHHHHhhC--------CcccCccccccCCCCcccceeeccCCCCccccccHHHHHHHHHHHHHHccCcccccCc
Confidence 58999999999999 554553 45679999977753 12222347778888887765
Q ss_pred --------hhhhhhhcccceEEEEEEEeCCC------EEEEEEecCCCCCcC-cccccCCCC
Q psy11882 64 --------HFTQVVWKSSSKLGVGIARKNGH------ILVVANYDPPGNYQG-QYANNVRRS 110 (110)
Q Consensus 64 --------hftqmvW~~t~~vGCa~~~c~~~------~~vVC~Y~P~GN~~g-~~~~nV~~~ 110 (110)
|||||||++|++||||++.|... .++||+|+|+||..+ +..+...+|
T Consensus 142 ~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~~~y~~g~~ 203 (225)
T KOG3017|consen 142 ADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGEIPYKGGKP 203 (225)
T ss_pred ccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCCCcCCCCCc
Confidence 99999999999999999999743 699999999966554 566666543
No 7
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=99.91 E-value=1.3e-24 Score=142.10 Aligned_cols=82 Identities=34% Similarity=0.641 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCC-------CCccceEEEEeCCCCChHHHHHHHHHHHHhchh-----------
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPN-------NKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR----------- 63 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~-------~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~----------- 63 (110)
++||..||.||++| .+.|+.. ..+|||++.... ..+ ..++|+.||+|..
T Consensus 31 ~~La~~A~~~a~~C--------~~~~~~~~~~~~~~~~~GeNl~~~~~-~~~----~~~av~~W~~e~~~y~~~~~~~~~ 97 (138)
T cd05383 31 EEAAQNAKKWANTC--------NLTHSPPNGRTIGGITCGENIFMSSY-PRS----WSDVIQAWYDEYKDFKYGVGATPP 97 (138)
T ss_pred HHHHHHHHHHHhcC--------CCcCCchhhcccCCCCcceeeeccCC-CCC----HHHHHHHHHHHHHhCCCCCCCCCC
Confidence 58999999999999 5666642 358999986553 335 7889999998876
Q ss_pred -----hhhhhhhcccceEEEEEEEeCC---CEEEEEEecCC
Q psy11882 64 -----HFTQVVWKSSSKLGVGIARKNG---HILVVANYDPP 96 (110)
Q Consensus 64 -----hftqmvW~~t~~vGCa~~~c~~---~~~vVC~Y~P~ 96 (110)
|||||||++|++||||++.|.+ +.++||+|+|+
T Consensus 98 ~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 98 GAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred CCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 9999999999999999999975 47899999995
No 8
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.90 E-value=2.1e-23 Score=136.21 Aligned_cols=81 Identities=36% Similarity=0.665 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCCC---CccceEEEEeCCCCChHHHHHHHHHHHHhchh---------------
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------- 63 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~---~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~--------------- 63 (110)
++||+.||.||++| .+.|+... .+||||+...+...+ +.++|+.||+|..
T Consensus 29 ~~La~~A~~~a~~C--------~~~~~~~~~~~~~GeNl~~~~~~~~~----~~~~v~~W~~e~~~y~~~~~~~~~~~~~ 96 (136)
T cd05559 29 EELAALAEAYARKC--------IWDHNPDRGHLRVGENLFISTGPPFD----ATKAVEDWNNEKLDYNYNTNTCAPNKMC 96 (136)
T ss_pred HHHHHHHHHHHHhc--------cccCCCcccCCCceeeeeecCCCCCC----HHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 58999999999999 67776643 699999876644456 8999999999876
Q ss_pred -hhhhhhhcccceEEEEEEEeCC--------CEEEEEEec
Q psy11882 64 -HFTQVVWKSSSKLGVGIARKNG--------HILVVANYD 94 (110)
Q Consensus 64 -hftqmvW~~t~~vGCa~~~c~~--------~~~vVC~Y~ 94 (110)
|||||||++|++||||++.|.+ ..++||+|+
T Consensus 97 ~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 97 GHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred cchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 9999999999999999999953 378999995
No 9
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.88 E-value=1.6e-22 Score=131.76 Aligned_cols=85 Identities=39% Similarity=0.725 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCCC---CccceEEEEeCCCCChHHHHHHHHHHHHhchh---------------
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR--------------- 63 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~---~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~--------------- 63 (110)
++||+.||.||++| .+.|+... .+|||++.......+....+.++|+.||+|..
T Consensus 36 ~~La~~A~~~a~~C--------~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~ 107 (144)
T cd05380 36 DELAALAQNWAKTC--------VFEHSPCRNTGGVGQNLAAGSSTGSTVEELAEDAVNAWYNELKDYGFGSNPTNNFNSG 107 (144)
T ss_pred HHHHHHHHHHHhcC--------CCcCCcccCCCCCCcEEEEeccCCCCHHHHHHHHHHHHHHHHHHcCCCcCcccccccc
Confidence 58999999999999 77777653 78999997664333455669999999999972
Q ss_pred --hhhhhhhcccceEEEEEEEeC----CCEEEEEEec
Q psy11882 64 --HFTQVVWKSSSKLGVGIARKN----GHILVVANYD 94 (110)
Q Consensus 64 --hftqmvW~~t~~vGCa~~~c~----~~~~vVC~Y~ 94 (110)
|||||||++|++||||++.|. ...++||+|+
T Consensus 108 ~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 108 IGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred hhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 999999999999999999997 4599999995
No 10
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=99.88 E-value=5e-22 Score=127.06 Aligned_cols=80 Identities=43% Similarity=0.689 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCCC---CccceEEEEeCCCCChHHHHHHHHHHHHhch--------------hh
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSWYDEI--------------RH 64 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~---~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~--------------~h 64 (110)
++|++.||.||++| .+.|+... .+|||+++.... .+ +..+++.|++|. .|
T Consensus 25 ~~La~~A~~~a~~c--------~~~h~~~~~~~~~geNi~~~~~~-~~----~~~~v~~W~~e~~~y~~~~~~~~~~~~h 91 (122)
T cd00168 25 AELAKTAQNYANRC--------IFKHSGEDGRGFVGENLAAGSYD-MT----GPAAVQAWYNEIKNYNFGQPGFSSGTGH 91 (122)
T ss_pred HHHHHHHHHHHhhc--------cccCCCcccCCCCCceeEEecCC-CC----HHHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 58999999999999 77777643 689999976643 45 899999999993 39
Q ss_pred hhhhhhcccceEEEEEEEeC-CCEEEEEEec
Q psy11882 65 FTQVVWKSSSKLGVGIARKN-GHILVVANYD 94 (110)
Q Consensus 65 ftqmvW~~t~~vGCa~~~c~-~~~~vVC~Y~ 94 (110)
||||||++|++||||++.|+ ++.++||+|.
T Consensus 92 ~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~ 122 (122)
T cd00168 92 YTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG 122 (122)
T ss_pred hhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence 99999999999999999998 5689999994
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.56 E-value=4.4e-14 Score=87.35 Aligned_cols=83 Identities=30% Similarity=0.482 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCCCCccceEEEEeCCCCChHHHHHHHHHHHHhchh------------------
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIR------------------ 63 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~------------------ 63 (110)
++|++.|+.+|+.| ...+......|+++....... .........+..|+.+..
T Consensus 21 ~~L~~~A~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (124)
T PF00188_consen 21 PELAKAAQAHAKYC--------ANSNSLSHDSGENGSQSSRFG-SYSDAQVTAVENWYSESKNYNFQNQSIFNSWMNSPG 91 (124)
T ss_dssp HHHHHHHHHHHTTT--------CSSEETTEESEEEEEEESSTT-SHHHHHHHHHHHHHGGGGGEETTCSTEESSTTSTCH
T ss_pred HHHHHHHHHhhHHh--------hhhcccccccCCCCccccccc-cccchhhHHHHHHHhcccccccccchhhhccCCchh
Confidence 58999999999999 333333445688887665322 212222222888986654
Q ss_pred hhhhhhhcccceEEEEEEEeCCC---EEEEEEe
Q psy11882 64 HFTQVVWKSSSKLGVGIARKNGH---ILVVANY 93 (110)
Q Consensus 64 hftqmvW~~t~~vGCa~~~c~~~---~~vVC~Y 93 (110)
||+||+|.++++||||++.|.++ .++||+|
T Consensus 92 h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 92 HFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp HHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred hhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 99999999999999999999865 9999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.15 E-value=4.2e-10 Score=72.64 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCC----------------CCccceEEEEeCCCCChHHHHHHHHHHHHhchhhh
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPN----------------NKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHF 65 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~----------------~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~hf 65 (110)
++|++.|+.||+.+ +.++.+.|... ...||||.... .+ +..+++.|++...|+
T Consensus 28 ~~L~~~A~~hA~~m----a~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~---~~----~~~~v~~W~~S~gH~ 96 (127)
T TIGR02909 28 PELSKVARLKSEDM----RDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN---ST----VEAVHNAWMNSPGHR 96 (127)
T ss_pred HHHHHHHHHHHHHH----HhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC---CC----HHHHHHHHHcCHhHH
Confidence 57999999999999 76666777642 14589997533 24 788999999998899
Q ss_pred hhhhhcccceEEEEEEEeCCC-EEEEEEe
Q psy11882 66 TQVVWKSSSKLGVGIARKNGH-ILVVANY 93 (110)
Q Consensus 66 tqmvW~~t~~vGCa~~~c~~~-~~vVC~Y 93 (110)
++|+|++.+++|||+..+.++ .|.|=.|
T Consensus 97 ~nil~~~~~~~Gvg~~~~~~g~~y~~q~F 125 (127)
T TIGR02909 97 ANILNPNYTEIGVGYVEGGSGGIYWTQMF 125 (127)
T ss_pred HHHcCCCcCeEeEEEEeCCCCCeEEEEEe
Confidence 999999999999999987654 5554443
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.06 E-value=1.3e-09 Score=68.58 Aligned_cols=81 Identities=30% Similarity=0.432 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCCCC----------------ccceEEEEeCCCCChHHHHHHHHHHHHhchhhh
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNK----------------FGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHF 65 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~~~----------------~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~hf 65 (110)
++|++.|+.+|+.+ ..++.+.|..... +|||+..... + +.++++.|+++..|+
T Consensus 24 ~~l~~~A~~~a~~~----~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~---~----~~~~~~~w~~~~~H~ 92 (122)
T cd05379 24 PALAAAAQAHARDM----AANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS---T----AEAAVDGWMNSPGHR 92 (122)
T ss_pred hHHHHHHHHHHHHH----HhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC---C----HHHHHHHHhCCHhHH
Confidence 47899999999999 6555566665322 3888875442 4 899999999998899
Q ss_pred hhhhhcccceEEEEEEEeC-CCEEEEEEe
Q psy11882 66 TQVVWKSSSKLGVGIARKN-GHILVVANY 93 (110)
Q Consensus 66 tqmvW~~t~~vGCa~~~c~-~~~~vVC~Y 93 (110)
.+|+|.+.+++|||+.... +..+.|..|
T Consensus 93 ~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f 121 (122)
T cd05379 93 ANILNPDYTEVGVGVAYGGDGGYYWVQVF 121 (122)
T ss_pred HHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence 9999999999999999976 446666554
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=96.61 E-value=0.0074 Score=42.05 Aligned_cols=73 Identities=30% Similarity=0.459 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHchhhhcCCCccccCCC----------------CCccceEEEEeCCCCChHHHHHHHHHHHHhchhhh
Q psy11882 2 AKVAKVAQAWASKLIGSIARGGHLQHRPN----------------NKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRHF 65 (110)
Q Consensus 2 ~~La~~Aq~~A~~c~~~~~~~~~~~~~~~----------------~~~Gen~~~~~~~~~~~~~~~~~~v~~W~~e~~hf 65 (110)
++|++.|+.+|+.. +..+.+.|... ...||||+.....+ +..+++.|.+...|-
T Consensus 104 ~~L~~~A~~~a~~m----~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~~~------~~~~v~~Wl~S~gH~ 173 (207)
T COG2340 104 ATLAKAARNHARDM----AKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSNDP------PEAAVDGWLNSPGHR 173 (207)
T ss_pred HHHHHHHHHHHHHH----HHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCCCc------hHHHHHHhcCChhhh
Confidence 57999999999999 77777877763 13789987554221 379999999999999
Q ss_pred hhhhhcccceEEEEEEEeC
Q psy11882 66 TQVVWKSSSKLGVGIARKN 84 (110)
Q Consensus 66 tqmvW~~t~~vGCa~~~c~ 84 (110)
.+|+-.+-+.+|-|+..-.
T Consensus 174 ~nll~~~~~~~Gv~~~~~~ 192 (207)
T COG2340 174 KNLLNPAYTEIGVGVAYDA 192 (207)
T ss_pred hhccCcchhheeEEEEecC
Confidence 9999999999999988744
No 15
>KOG0286|consensus
Probab=73.86 E-value=3.5 Score=30.67 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=22.5
Q ss_pred hhhhcccceEEEEEEEeCCCEEEEEEecCCCCCc
Q psy11882 67 QVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQ 100 (110)
Q Consensus 67 qmvW~~t~~vGCa~~~c~~~~~vVC~Y~P~GN~~ 100 (110)
-+||+.-|.---..---...+++.|-|+|.||..
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFV 112 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEEEECCCCCeE
Confidence 4777766544332222234599999999999985
No 16
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=43.27 E-value=41 Score=25.21 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=19.0
Q ss_pred ccceEEEEe-CCCCChHHHHHHHHHHHHhch
Q psy11882 33 FGENIWMGS-GYKFTDEEAVKNAVKSWYDEI 62 (110)
Q Consensus 33 ~Gen~~~~~-~~~~~~~~~~~~~v~~W~~e~ 62 (110)
.+.|..+.. +...+-.+++.+.+..||.+.
T Consensus 144 ~~~n~g~v~vg~s~dTa~Fav~~i~~WW~~~ 174 (311)
T PF07592_consen 144 PAANEGWVSVGTSHDTADFAVDSIRRWWEEM 174 (311)
T ss_pred ccCCeEEEEEecCcccHHHHHHHHHHHHHHh
Confidence 344554332 333344677899999999876
No 17
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=35.46 E-value=22 Score=18.88 Aligned_cols=18 Identities=11% Similarity=0.425 Sum_probs=9.2
Q ss_pred EEEEecCCCCCcCccccc
Q psy11882 89 VVANYDPPGNYQGQYANN 106 (110)
Q Consensus 89 vVC~Y~P~GN~~g~~~~n 106 (110)
.-|.|+|.|.+.+.|.++
T Consensus 2 ~~~~~~~nGvFAN~F~~~ 19 (45)
T PF12197_consen 2 RKCMYSSNGVFANSFSDD 19 (45)
T ss_dssp -EEEEETT-----EEEET
T ss_pred cEEEEcCCCceEEEEEcC
Confidence 358999999988877653
No 18
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=30.14 E-value=43 Score=16.38 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=9.0
Q ss_pred HHHHHHHHHHc
Q psy11882 5 AKVAQAWASKL 15 (110)
Q Consensus 5 a~~Aq~~A~~c 15 (110)
+..|..+|++|
T Consensus 20 anea~~fAKhC 30 (32)
T PF11216_consen 20 ANEAADFAKHC 30 (32)
T ss_pred HhHHHHHHHhh
Confidence 46788899998
No 19
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].
Probab=25.83 E-value=45 Score=25.80 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.2
Q ss_pred CEEEEEEecCCCCCcCccc
Q psy11882 86 HILVVANYDPPGNYQGQYA 104 (110)
Q Consensus 86 ~~~vVC~Y~P~GN~~g~~~ 104 (110)
..-+||.|+.+||++.+|.
T Consensus 252 ~~~~v~FydSgG~~P~efh 270 (423)
T PF03290_consen 252 EKKIVYFYDSGGNIPEEFH 270 (423)
T ss_pred cccEEEEEcCCCCCHHHcC
Confidence 3678999999999998774
No 20
>PF11952 DUF3469: Protein of unknown function (DUF3469); InterPro: IPR021859 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 108 to 439 amino acids in length.
Probab=24.45 E-value=11 Score=22.78 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.5
Q ss_pred hhhhhcccceEEEEEE
Q psy11882 66 TQVVWKSSSKLGVGIA 81 (110)
Q Consensus 66 tqmvW~~t~~vGCa~~ 81 (110)
-.|||.+...+||.+.
T Consensus 39 Ls~v~~N~~fLGC~Yp 54 (87)
T PF11952_consen 39 LSQVWANMEFLGCRYP 54 (87)
T ss_pred HHHHHHhHHHHhcCCC
Confidence 4689999999999764
No 21
>PF13983 YsaB: YsaB-like lipoprotein
Probab=24.02 E-value=51 Score=19.16 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=11.3
Q ss_pred EEEEEEecCCCCCc
Q psy11882 87 ILVVANYDPPGNYQ 100 (110)
Q Consensus 87 ~~vVC~Y~P~GN~~ 100 (110)
.-+||.|+|.|-+.
T Consensus 59 E~FvCSFD~dGqFL 72 (77)
T PF13983_consen 59 EGFVCSFDADGQFL 72 (77)
T ss_pred cceEEeECCCCcEE
Confidence 56899999988664
No 22
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.19 E-value=81 Score=16.24 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=9.0
Q ss_pred cccceEEEEEEE
Q psy11882 71 KSSSKLGVGIAR 82 (110)
Q Consensus 71 ~~t~~vGCa~~~ 82 (110)
.++..||||+.-
T Consensus 8 ~~~vaIa~~VvV 19 (40)
T PF08693_consen 8 SNTVAIAVGVVV 19 (40)
T ss_pred CceEEEEEEEEe
Confidence 356789999875
No 23
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=21.03 E-value=1.2e+02 Score=16.49 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=16.2
Q ss_pred EEEEEEecCCCCCcCccccc
Q psy11882 87 ILVVANYDPPGNYQGQYANN 106 (110)
Q Consensus 87 ~~vVC~Y~P~GN~~g~~~~n 106 (110)
.+++.+|.|-|..-..|..+
T Consensus 28 ~~~l~Rln~DGsLDttFg~~ 47 (55)
T TIGR02608 28 DFVLARLNADGSLDTTFGTG 47 (55)
T ss_pred cEEEEEECCCCCccCCcCCC
Confidence 67899999999988777543
Done!