RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11882
(110 letters)
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding
protein, golgi apparatus, myristate; HET: I6P; 1.50A
{Homo sapiens} PDB: 1smb_A*
Length = 154
Score = 109 bits (274), Expect = 3e-32
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 29/128 (22%)
Query: 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNN---KFGENIWMGSGYKFTDEEAVKNAVKSW 58
+ + AQ ++ L A L+H P + + GEN+ S ++ K W
Sbjct: 33 KNLNREAQQYSEAL----ASTRILKHSPESSRGQCGENLAWASY-----DQTGKEVADRW 83
Query: 59 YDEIR--------------HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY--QG 101
Y EI+ HFT +VWK++ K+GVG A +G VVA Y P GN +G
Sbjct: 84 YSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEG 143
Query: 102 QYANNVRR 109
+ NV
Sbjct: 144 FFEENVLP 151
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense;
NMR {Solanum lycopersicum} SCOP: d.111.1.1
Length = 135
Score = 104 bits (261), Expect = 2e-30
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 29/118 (24%)
Query: 2 AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE 61
A +A AQ +A+ G +L H GEN+ G G + AV+ W E
Sbjct: 27 ANLASRAQNYANSRAG----DCNLIHSG---AGENLAKGGGDF-----TGRAAVQLWVSE 74
Query: 62 IR----------------HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQ 102
H+TQVVW++S +LG G AR NG + NYDP GN+ GQ
Sbjct: 75 RPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQ 132
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}
Length = 196
Score = 102 bits (256), Expect = 5e-29
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 25/120 (20%)
Query: 3 KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE- 61
+V K A A + + H Q GENI+M S +A + A K+W+ E
Sbjct: 58 EVEKTAMNNAKQCVF-----KHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGEL 112
Query: 62 -------------------IRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQ 102
+ H+TQ+VW+ + KLG + + VV Y P GN G+
Sbjct: 113 AEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGK 172
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system;
2.20A {Necator americanus}
Length = 424
Score = 101 bits (252), Expect = 6e-27
Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 28/123 (22%)
Query: 4 VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE-- 61
V A +K + H GENI+ S KF +A K A + W++E
Sbjct: 280 VEASAIRHGNKCVY-----QHSHGEDRPGLGENIYKTSVLKFDKNKAAKQASQLWWNELK 334
Query: 62 ---------------------IRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQ 100
I H+TQ+ W ++ KLG + N V Y P GNY
Sbjct: 335 EYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDFTFGVCQYGPGGNYM 394
Query: 101 GQY 103
G
Sbjct: 395 GHV 397
Score = 90.2 bits (223), Expect = 9e-23
Identities = 13/119 (10%), Positives = 28/119 (23%), Gaps = 26/119 (21%)
Query: 3 KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKF--TDEEAVKNAVKSWYD 60
+ + Q +N S ++ + W+
Sbjct: 77 AMEQQLQDAIQSCP--------SGFAGIQGVAQNTMSWSSSGGYPDPSVKIEPTLSGWWS 128
Query: 61 EIR----------------HFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQY 103
+ F+ +V+ ++KLG + V Y+ G Q
Sbjct: 129 GAKKNGVGPDNKYTGGGLFAFSNMVYSETTKLGCAYKVCGTKLAVSCIYNGVGYITNQP 187
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 94.6 bits (235), Expect = 1e-25
Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 3 KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
A+ A+ WA + + + + + GENI+M S V++WYDEI
Sbjct: 35 HAAQNAKRWADRCTFA-HSPPNTRTVGKLRCGENIFMSSQ-----PFPWSGVVQAWYDEI 88
Query: 63 R----------------HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQYAN 105
+ H+TQVVW S +G A+ + L V Y P GN +G A
Sbjct: 89 KNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSSKYLYVCQYCPAGNIRGSIAT 148
Query: 106 NVRR 109
+
Sbjct: 149 PYKS 152
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 93.4 bits (232), Expect = 3e-25
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 25/121 (20%)
Query: 3 KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
+ A A+ WA+ + +L+ + GE+I+M S + + W+DE
Sbjct: 44 EAASNAERWANTCSLN-HSPDNLRVLEGIQCGESIYMSSNAR-----TWTEIIHLWHDEY 97
Query: 63 R----------------HFTQVVWKSSSKLGVGIAR---KNGHILVVANYDPPGNYQGQY 103
+ H+TQ+VW + + G ++ V Y P GN+QG+
Sbjct: 98 KNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKT 157
Query: 104 A 104
A
Sbjct: 158 A 158
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein;
1.85A {Homo sapiens} PDB: 3q2r_A
Length = 205
Score = 91.9 bits (228), Expect = 9e-25
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 30/126 (23%)
Query: 3 KVAKVAQAWASKLI---GSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWY 59
+A++A+AWAS + + H H GENIW GS F+ V +A+ +WY
Sbjct: 48 ALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIFS----VSSAITNWY 103
Query: 60 DE--------------IRHFTQVVWKSSSKLGVGIAR---------KNGHILVVANYDPP 96
DE H+TQVVW S K+G + + + NY P
Sbjct: 104 DEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPG 163
Query: 97 GNYQGQ 102
GNY
Sbjct: 164 GNYPTW 169
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula
vulgaris} SCOP: d.111.1.1
Length = 209
Score = 90.3 bits (224), Expect = 4e-24
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 25/121 (20%)
Query: 3 KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE- 61
++A VAQ WA++ + + G+N+ + + VK W DE
Sbjct: 87 ELAYVAQVWANQCQYG---HDTCRDVAKYQVGQNVALTGSTA-AKYDDPVKLVKMWEDEV 142
Query: 62 ----------------IRHFTQVVWKSSSKLGVGIAR----KNGHILVVANYDPPGNYQG 101
H+TQ+VW ++ ++G G + K +V NY P GN++
Sbjct: 143 KDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKN 202
Query: 102 Q 102
+
Sbjct: 203 E 203
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted,
cross- reactivity; 3.05A {Solenopsis invicta}
Length = 218
Score = 90.4 bits (224), Expect = 4e-24
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 30/126 (23%)
Query: 4 VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE-- 61
+A +AQ WA++ ++ G+NI S ++ + WY+E
Sbjct: 85 LATIAQRWANQCTFE---HDACRNVERFAVGQNIAATSSSG-KNKSTPNEMILLWYNEVK 140
Query: 62 -------------------IRHFTQVVWKSSSKLGVGIAR-----KNGHILVVANYDPPG 97
+ H+TQ+VW ++K+G G +V NY P G
Sbjct: 141 DFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAG 200
Query: 98 NYQGQY 103
N G
Sbjct: 201 NVLGAP 206
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland,
protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB:
3u3n_C* 3u3u_C*
Length = 233
Score = 65.5 bits (159), Expect = 2e-14
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 28/124 (22%)
Query: 4 VAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTD-EEAVKNAVKSWYDE- 61
+A +A+ +G G+ + SG K +E + +AVK + +
Sbjct: 77 LAGLAKRHTKGCVGE--THACRNTERFWLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQK 134
Query: 62 -------------------IRHFTQVVWKSSSKLGVGIAR----KNGHILVVANYDPPGN 98
++ + + +G G+ L+ N+ N
Sbjct: 135 HNITREIIENYRENGPNGDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFS-SQN 193
Query: 99 YQGQ 102
+G+
Sbjct: 194 TRGR 197
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function;
2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A
Length = 206
Score = 59.7 bits (144), Expect = 2e-12
Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 17/105 (16%)
Query: 5 AKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEIRH 64
+ A+ + + G + G + A+K ++++ +
Sbjct: 57 EEEARKEIKLPG----------YADLHHRGVTRFSGDYEG-SAISALKEILETFSADKNS 105
Query: 65 FTQVVWKSSSKLGVGIARKNG------HILVVANYDPPGNYQGQY 103
QVV+ +++ G + + V YD +
Sbjct: 106 MRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKPKDGESF 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 2e-04
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 48/117 (41%)
Query: 5 AKVAQAWASKLIGSI----------ARGGHLQHR-PNNKFG-ENIWM-----GSGYKFTD 47
A + A + RG +Q P ++ G N M G
Sbjct: 1769 ALASLA------DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 48 EEAVKNAVKSWYDEIRHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYA 104
+EA++ V+ + ++ G ++ + NY+ QY
Sbjct: 1823 QEALQYVVER----------------------VGKRTGWLVEIVNYNVEN---QQYV 1854
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.44
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 13 SKLIGSIARGGHLQHRPNNKFGENI-WMGSGYKFTDEEAVKNAVKSWYDEIRHFTQ 67
+ + + ++ K I W+ + E ++ K Y ++T
Sbjct: 164 TWVALDVCL----SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain,
topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A
{Escherichia coli} PDB: 1x75_A* 3kua_A*
Length = 156
Score = 27.2 bits (61), Expect = 0.91
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 2 AKVAKVAQAWASKLIGS-IARGGHLQHRPNNKFGENIWMGSGYKFTDEEA 50
AK A VA W + + + R G RP E Y T+++A
Sbjct: 65 AKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQA 114
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group
transfer, pyrimidine biosynthesis, transferase; 2.40A
{Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A*
2bmu_A* 2bri_A*
Length = 244
Score = 25.8 bits (57), Expect = 3.7
Identities = 5/46 (10%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 59 YDEIRHFTQVVWKSSSKLGV------GIARKNGHILVVANYDPPGN 98
+E+ + + V I ++G +V + +
Sbjct: 183 PEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKD 228
>1kxg_A B lymphocyte stimulator; BAFF, TALL-1, thank, ZTNF4, cytokine,
TNF superfamily, jellyroll, beta-sandwich; HET: CIT;
2.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 1kd7_A 1otz_A
1oqe_A 1jh5_A 1oqd_A
Length = 152
Score = 25.3 bits (55), Expect = 4.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 64 HFTQVVWKSSSKLGVGIARKNGHILV 89
+T V W S K G + K ILV
Sbjct: 29 SYTFVPWLLSFKRGSALEEKENKILV 54
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein;
NMR {Schistocerca gregaria}
Length = 109
Score = 24.8 bits (54), Expect = 4.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 89 VVANYDPPGNYQGQYANNVRR 109
+ A YDP G Y +Y + +
Sbjct: 86 LKAKYDPDGTYSKKYEDREKE 106
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 24.7 bits (54), Expect = 6.3
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 43 YKFTDEEAVKNAVKSWYDEIRHF 65
+ + E + + +K W EI+ F
Sbjct: 86 FDISRPETLDSVLKKWKGEIQEF 108
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 24.7 bits (54), Expect = 6.5
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 43 YKFTDEEAVKNAVKSWYDEIRHF 65
+ + E + + +K W EI+ F
Sbjct: 107 FDISRPETLDSVLKKWKGEIQEF 129
>1u5x_A Tumor necrosis factor ligand superfamily member 1; TNFSF,
cytokine, jelly-roll, trimer, hormone-growth factor C;
1.80A {Mus musculus} SCOP: b.22.1.1 PDB: 1u5y_A 1u5z_A
3k48_A 1xu1_A 1xu2_A
Length = 140
Score = 24.5 bits (53), Expect = 6.8
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 64 HFTQVVWKSSSKLGVGIARKNGHILV 89
T+V+W+ + G G+ + + V
Sbjct: 22 DVTEVMWQPVLRRGRGLEAQGDIVRV 47
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 24.9 bits (54), Expect = 7.1
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 52 KNAVKSWYDEIRHF 65
+ WY E+RH
Sbjct: 243 HHVRAKWYPEVRHH 256
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR
{Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A
1n8u_A* 1n8v_A* 2jnt_A
Length = 112
Score = 24.4 bits (53), Expect = 7.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 89 VVANYDPPGNYQGQYANNVRRS 110
+ A YDP GN++ +Y + + +
Sbjct: 84 LTAKYDPTGNWRKKYEDRAKAA 105
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 24.3 bits (53), Expect = 8.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 43 YKFTDEEAVKNAVKSWYDEIRHF 65
+ T + N WY E+ HF
Sbjct: 113 FDVTSPNSFDNIFNRWYPEVNHF 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.408
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,799,754
Number of extensions: 95857
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 31
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)