RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11882
         (110 letters)



>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein
           (SteCRISP) {Chinese green tree viper (Trimeresurus
           stejnegeri) [TaxId: 39682]}
          Length = 164

 Score = 66.1 bits (160), Expect = 1e-15
 Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 25/127 (19%)

Query: 2   AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDE 61
            + A  A+ WA + I S       +     K GENI+M             + + +W+DE
Sbjct: 43  PEAADNAERWAYRCIES-HSSYESRVIEGIKCGENIYMSPYPM-----KWTDIIHAWHDE 96

Query: 62  ----------------IRHFTQVVWKSSSKLGVGIAR---KNGHILVVANYDPPGNYQGQ 102
                             H+TQ+VW  S ++G   A           V  Y P GN+ G+
Sbjct: 97  YKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGK 156

Query: 103 YANNVRR 109
            A     
Sbjct: 157 TATPYTS 163


>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket
           (Vespula vulgaris), Ves v 5 [TaxId: 7454]}
          Length = 209

 Score = 65.7 bits (159), Expect = 4e-15
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 25/122 (20%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
           ++A VAQ WA++           +     + G+N+ +        ++ VK  VK W DE+
Sbjct: 87  ELAYVAQVWANQ---CQYGHDTCRDVAKYQVGQNVALTGSTAAKYDDPVK-LVKMWEDEV 142

Query: 63  R-----------------HFTQVVWKSSSKLGVGIAR----KNGHILVVANYDPPGNYQG 101
           +                 H+TQ+VW ++ ++G G  +    K     +V NY P GN++ 
Sbjct: 143 KDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKN 202

Query: 102 QY 103
           + 
Sbjct: 203 EE 204


>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato
           (Lycopersicon esculentum), P14a [TaxId: 4081]}
          Length = 135

 Score = 57.6 bits (138), Expect = 2e-12
 Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 21/115 (18%)

Query: 2   AKVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVK----- 56
           A +A  AQ +A+      A   +L H    +   N+  G G  FT   AV+  V      
Sbjct: 27  ANLASRAQNYANSR----AGDCNLIHSGAGE---NLAKG-GGDFTGRAAVQLWVSERPSY 78

Query: 57  -------SWYDEIRHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQY 103
                      + RH+TQVVW++S +LG G AR  NG   +  NYDP GN+ GQ 
Sbjct: 79  NYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQR 133


>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 149

 Score = 56.0 bits (134), Expect = 7e-12
 Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 23/124 (18%)

Query: 3   KVAKVAQAWASKLIGSIARGGHLQHRPNNKFGENIWMGSGYKFTDEEAVKNAVKSWYDEI 62
            + + AQ ++  L  +     H       + GEN+   S  +       K     WY EI
Sbjct: 31  NLNREAQQYSEALAST-RILKHSPESSRGQCGENLAWASYDQT-----GKEVADRWYSEI 84

Query: 63  R--------------HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY--QGQYAN 105
           +              HFT +VWK++ K+GVG A   +G   VVA Y P GN   +G +  
Sbjct: 85  KNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEE 144

Query: 106 NVRR 109
           NV  
Sbjct: 145 NVLP 148


>d1r44a_ d.65.1.4 (A:) D-Ala-D-Ala dipeptidase VanX {Enterococcus
           faecium [TaxId: 1352]}
          Length = 202

 Score = 24.5 bits (53), Expect = 3.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 34  GENIWMGSGYKFTDEEAVKNAVKSWYDEIRH 64
           GE + MGS + F DE +   A     +E ++
Sbjct: 132 GELVPMGSRFDFMDERSHHAANGISCNEAQN 162


>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609
          {Pyrococcus furiosus [TaxId: 2261]}
          Length = 124

 Score = 23.4 bits (50), Expect = 6.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 44 KFTDEEAVKNAVKSWYDEIRHFTQ 67
            ++ EAV+   K+ Y E+  F++
Sbjct: 76 LISEREAVEIIKKNLYPEVLDFSK 99


>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase,
          regulatory (C-terminal) domain {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 78

 Score = 22.9 bits (49), Expect = 7.3
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 85 GHILVVANYDPPG 97
          G  L++   D PG
Sbjct: 3  GINLIIHYVDRPG 15


>d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate synthase,
           C-terminal domain {Synechocystis sp. [TaxId: 1143]}
          Length = 268

 Score = 23.4 bits (50), Expect = 9.0
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 43  YKFTDEEAVKNAVKSWYDEIRHFTQVV 69
            + T     K  + +W D +  F Q V
Sbjct: 230 VEHTGSPKGKAILANWSDYLGKFWQAV 256


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.408 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,547
Number of extensions: 18224
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 16
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)