BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11884
(644 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 59/67 (88%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQ 264
DYYQILG+ +N+S KEIKKAYY+LAKKYHPDTNK DP A +KF +++EAYEVLSD+ KR+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 265 EYDTWGA 271
+YD +G+
Sbjct: 68 QYDAYGS 74
>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj
Subfamily A Menber 3
Length = 104
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 58/97 (59%)
Query: 378 GSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT 437
GSS +++ F AA+G KE VN++D C +C G E GTK C YC GSG ET
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETIN 60
Query: 438 TGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRR 474
TGPF+M++TCR C G G I PC C G GQ Q++
Sbjct: 61 TGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKK 97
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 85.5 bits (210), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY+ILG+SK + +EI+KAY LA KYHPD N+ D A KF E+ EAYEVL+D K
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGD 312
R YD +G + + G D+ ++F +FGD
Sbjct: 62 RAAYDQYGHAAFEQGGMGGGGFGGGADF------------SDIFGDVFGD 99
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 85.5 bits (210), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY+ILG+SK + +EI+KAY LA KYHPD N+ D A KF E+ EAYEVL+D K
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGD 312
R YD +G + + G D+ ++F +FGD
Sbjct: 62 RAAYDQYGHAAFEQGGMGGGGFGGGADF------------SDIFGDVFGD 99
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY+ILG+SK + +EI+KAY LA KYHPD N+ D A KF E+ EAYEVL+D K
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 263 RQEYDTWG 270
R YD +G
Sbjct: 62 RAAYDQYG 69
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 206 YYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQE 265
YY ILG+ K++S ++IKKA+++LA KYHPD NK+ P+A KF E++EAYE LSD +R+E
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKE 67
Query: 266 YDTWGATS 273
YDT G ++
Sbjct: 68 YDTLGHSA 75
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
KDYYQ LG+++ +S +EIK+AY A +YHPD NK +P A +KF E++EAY+VLSD KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 264 QEYDTWG 270
+ +D +G
Sbjct: 62 EIFDRYG 68
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 389 FETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSG--YETTTTGPFIMK-- 444
E +G ++ +N +C +C G + G +CT C G G + T GP I +
Sbjct: 22 LEELYKGRTAKLALNKQILCKECEGRGGKKGAVK-KCTSCNGQGIKFVTRQMGPMIQRFQ 80
Query: 445 TTCRYCSGSGIYI--KFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ---- 498
T C C G+G I K C++C+G +R+ + + + G++DGQ I F DQ
Sbjct: 81 TECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDV 140
Query: 499 -----IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGT 553
+F+ + P + RD D+ E I + AI GG +E + GD L V I PG
Sbjct: 141 IPGDVVFIVSER-PHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGE 199
Query: 554 SSHTKIK--IPYKGLKNRNSSGYGHHFVHVKIEVP 586
++ I KG+ GYG+ + I+ P
Sbjct: 200 VIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDP 234
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
KDYY I+G+ K IK AY LA+KYHPD +K +P+A +F EV+EA+EVLSD+ +R
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRR 63
Query: 264 QEYD 267
EYD
Sbjct: 64 AEYD 67
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 28/272 (10%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+++Y +LG+SK +S++EI++A+ +LA K HPD N +PNA F +++ AYEVL D+ R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 264 QEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEE 323
++YD +G + + G S + +R++F D E+ FD V E
Sbjct: 81 KKYDKYGEKGLEDNQGGQYESWS----YYRYDFGIYDDDPEII--TLERREFDAAVNSGE 134
Query: 324 -FIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQE 382
+ N Y GSS L VD L+ IG ++ ++ + G S
Sbjct: 135 LWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLR----IGAVNCGDDRMLCRMKGVNSYPS 190
Query: 383 VILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFI 442
+ + R G V N + + + + VR T + S TG F+
Sbjct: 191 LFI-------FRSGMAAVKYN----GDRSKESLVAFAMQHVRSTVTELS------TGNFV 233
Query: 443 MKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRR 474
+ +G G I F + D + + R
Sbjct: 234 NAIETAFAAGVGWLITFCSKGEDCLTSQTRLR 265
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDD 260
+K YY +LG+ N++ +E+KKAY +LA KYHPD N PN +KF ++S+AYEVLSD
Sbjct: 3 VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKN---PNEGEKFKQISQAYEVLSDA 59
Query: 261 TKRQEYDTWG 270
KR+ YD G
Sbjct: 60 KKRELYDKGG 69
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 11/112 (9%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDD 260
++ KDYY ILG+ K IK AY LA+KYHPD +K + +A KF +++EA+EVL D+
Sbjct: 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDE 83
Query: 261 TKRQEYDT-WGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFG 311
+R EYD W ++ G R T + Y S D +++F +FG
Sbjct: 84 QRRAEYDQLWQHRND--PGFGRQRQTHEQSY-------SQQDFDDIFSSMFG 126
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 455 IYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF-----------PIGQDQIFVTF 503
I P N GM ++ +T+++ IP G+ DGQ IR P G +++
Sbjct: 162 ISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNG--DLWLVI 219
Query: 504 QVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPY 563
+ P + ++ ++ +A LG + V + +++ + + PG+ + +++I
Sbjct: 220 HIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLK-ESILLTVPPGSQAGQRLRIKG 278
Query: 564 KGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVE 604
KGL ++ + G F +KI +P P EK ++L ++ + E
Sbjct: 279 KGLVSKTHT--GDLFAVIKIVMPTKPDEKARELWQQLAAAE 317
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQ 264
D Y++LG+S+ +S +IKKAY +LA+++HPD NK DP A +F ++S+AYE+LS++ KR
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRT 76
Query: 265 EYDTWGA 271
YD +G+
Sbjct: 77 NYDHYGS 83
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 48/65 (73%)
Query: 207 YQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEY 266
Y +LG+ KN+++ +IKK+Y +LA KYHPD N +P A+ KF E++ A+ +L+D TKR Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 267 DTWGA 271
D +G+
Sbjct: 80 DKYGS 84
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 206 YYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN-ASKKFHEVSEAYEVLSDDTKRQ 264
YY+IL + +++SA +IKKAY A ++HPD N + A KKF EV+EAYEVLSD KR+
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 265 EYDTWGATSEQMSAAGASRS 284
YD +G + G SR+
Sbjct: 64 IYDRYGREGLTGTGTGPSRA 83
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 23/199 (11%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+++Y +LG+SK +S++EI++A+ +LA K HPD N +PNA F +++ AYEVL D+ R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 264 QEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEE 323
++YD +G + + G S + +R++F D E+ FD V E
Sbjct: 62 KKYDKYGEKGLEDNQGGQYESWS----YYRYDFGIYDDDPEII--TLERREFDAAVNSGE 115
Query: 324 -FIANKYGFGSS---------QEVILKIDKCLQQVPVDLQLQRTTC-IGGISITEEEFI- 371
+ N Y G S +E ++D L+ V+ R C + G++ FI
Sbjct: 116 LWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIF 175
Query: 372 -----ANKYGFGSSQEVIL 385
A KY S+E ++
Sbjct: 176 RSGMAAVKYNGDRSKESLV 194
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDD 260
+K YY +LG+ ++S E+KKAY ++A K+HPD N P+ +++F ++S+AYEVLSD+
Sbjct: 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDE 61
Query: 261 TKRQEYDTWG 270
KRQ YD G
Sbjct: 62 KKRQIYDQGG 71
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDP-NASKKFHEVSEAYEVLSDDTKR 263
+YY++LG+ ++S ++IKKAY +LA ++HPD N + A KKF VSEAYEVLSD KR
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 264 QEYDTWGATS 273
YD G S
Sbjct: 70 SLYDRAGCDS 79
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQ 264
DYY+ILG+S+ +S +++KKAY LA K+HPD N P A++ F + AY VLS+ KR+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRK 66
Query: 265 EYDTWGA 271
+YD +G+
Sbjct: 67 QYDQFGS 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTN-KTDPNASKKFHEVSEAYEVLSDDTKR 263
DYY++L + + +S++ IKKAY +LA K+HPD N + A ++F +V+EAYEVLSD KR
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 264 QEYDTWGA 271
YD +G+
Sbjct: 70 DIYDRYGS 77
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDD 260
+K Y +LG+S +++ +E+KK Y + A KYHPD D ++KF E+SEA+E+L+D
Sbjct: 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDP 61
Query: 261 TKRQEYDTWG 270
KR+ YD +G
Sbjct: 62 QKREIYDQYG 71
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 398 KEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI 457
KE+ + ++ C C G+ + GT+ C C GSG G F ++ TC +C G G I
Sbjct: 4 KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63
Query: 458 KFPCQNCDGMGQ 469
K PC C G G+
Sbjct: 64 KDPCNKCHGHGR 75
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
R Y +LG+ ++ +IK AYY YHPD N A+++F +S+AY VL T
Sbjct: 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATL 75
Query: 263 RQEYDTWGATSEQMSAAGASRST 285
R++YD + E + G+ S+
Sbjct: 76 RRKYDRGLLSDEDLRGPGSGPSS 98
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 197 SLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNAS------KKFHEV 250
++ + +KD+Y ILG +++ ++K+ Y +L YHPD TD A +KF E+
Sbjct: 3 AVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEI 62
Query: 251 SEAYEVLSDDTKRQEYD 267
+A+++L ++ ++EYD
Sbjct: 63 DQAWKILGNEETKREYD 79
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 198 LSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPD---TNKTDPNASKKFHEVSEAY 254
L +++DYY+ILG+ +N+ +EI KAY +LA ++HPD + A KKF +++ A
Sbjct: 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435
Query: 255 EVLSDDTKRQEYD 267
EVLSD R+++D
Sbjct: 436 EVLSDPEMRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 198 LSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPD---TNKTDPNASKKFHEVSEAY 254
L +++DYY+ILG+ +N+ +EI KAY +LA ++HPD + A KKF +++ A
Sbjct: 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435
Query: 255 EVLSDDTKRQEYD 267
EVLSD R+++D
Sbjct: 436 EVLSDPEXRKKFD 448
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 463 NCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ--------IFVTFQVIPSSRYHRD 514
N DG + + ++I + +G ++G I FP DQ I + P + + RD
Sbjct: 32 NPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRD 91
Query: 515 QSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGY 574
SD+ IS+ +A+ G T+NV + G T+ V + + K+P +GL
Sbjct: 92 GSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLP------- 144
Query: 575 GHHFVHVKIEVPRYPSEKQKDLVREFFSVEP 605
+P+ P EK+ DL+ EF + P
Sbjct: 145 ----------LPKTP-EKRGDLIIEFEVIFP 164
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 197 SLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNAS------KKFHEV 250
+L +KD+Y ILG +++ ++K+ Y +L YHPD D A +KF E+
Sbjct: 9 ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68
Query: 251 SEAYEVLSDDTKRQEYD 267
+A+++L ++ +++YD
Sbjct: 69 DQAWKILGNEETKKKYD 85
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+DYY +LG + SS ++I + A + HPD + +P A + F ++ +A E+L+++ R
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79
Query: 264 QEYDTW 269
YD W
Sbjct: 80 ARYDHW 85
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 463 NCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ--------IFVTFQVIPSSRYHRD 514
N DG + + ++I + +G ++G I FP DQ I + P + + RD
Sbjct: 34 NPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRD 93
Query: 515 QSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGY 574
SD+ IS+ +A+ G T+NV + G T+ V + + K+P +GL
Sbjct: 94 GSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGL-------- 145
Query: 575 GHHFVHVKIEVPRYPSEKQKDLVREFFSVEP 605
+P+ P EK+ DL+ EF + P
Sbjct: 146 ---------PLPKTP-EKRGDLIIEFEVIFP 166
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 463 NCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ--------IFVTFQVIPSSRYHRD 514
N DG + + ++I + +G ++G I FP DQ I + P + + RD
Sbjct: 41 NPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRD 100
Query: 515 QSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGY 574
SD+ IS+ +A+ G T+NV + G T+ V + + K+P +GL
Sbjct: 101 GSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGL-------- 152
Query: 575 GHHFVHVKIEVPRYPSEKQKDLVREFFSVEP 605
+P+ P EK+ DL+ EF + P
Sbjct: 153 ---------PLPKTP-EKRGDLIIEFEVIFP 173
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 207 YQILGISKNSSAKE-IKKAYYELAKKYHPDTNKTDPN---ASKKFHEVSEAYEVLSDDTK 262
Y +L +++ K+ + KAY LA+K+HPD K A ++F ++ AYE L DD
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 263 RQEYDTW 269
+ YD +
Sbjct: 78 KTNYDYY 84
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 511 YHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIK--IPYKGLKN 568
+ RD D+ E I + AI GG +E + GD L V I PG ++ I KG+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 569 RNSSGYGHHFVHVKIEVP 586
GYG+ + I+ P
Sbjct: 62 PKYGGYGNLIIKFTIKFP 79
>pdb|3I38|A Chain A, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|B Chain B, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|C Chain C, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|D Chain D, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|E Chain E, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|F Chain F, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|G Chain G, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|H Chain H, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|I Chain I, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|J Chain J, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|K Chain K, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|L Chain L, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 109
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 528 QAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPR 587
+A LG + V + +++ + + PG+ + +++I KGL ++ +G F +KI P
Sbjct: 24 EAALGAKVTVPTL-KESILLTVPPGSQAGQRLRIKGKGLVSKTHTG--DLFAVIKIVXPT 80
Query: 588 YPSEKQKDLVREFFSVEPNTNGNK 611
P EK ++L ++ + E + + K
Sbjct: 81 KPDEKARELWQQLAAAEASFDPRK 104
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
KD + +LG+ +S E+ KAY +LA HPD P + F V A L + K
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPD-KCVAPGSEDAFKAVVNARTALLKNIK 84
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 23/117 (19%)
Query: 43 APYVSKRFRNYGHFPKIQINVHANSQSYVFFYEESDGLTYSSIRQTAKELQRFRNYGQFR 102
A Y++K F P Q N+ + +EE++ + ++ + G
Sbjct: 389 AEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPF-----------KYNDLGALA 437
Query: 103 LFDTKIAISSCNVTKKCFYSIQTSPQGSVGSGLMKTLVLQKV--LTMILSLKAVIRV 157
++ AI++ K+ FY+ G GLM T L ++ L+MILS ++ ++V
Sbjct: 438 YLGSERAIATIRSGKRTFYT---------GGGLM-TFYLWRILYLSMILSARSRLKV 484
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 23/117 (19%)
Query: 43 APYVSKRFRNYGHFPKIQINVHANSQSYVFFYEESDGLTYSSIRQTAKELQRFRNYGQFR 102
A Y++K F P Q N+ + +EE++ + ++ + G
Sbjct: 358 AEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFEENNFKPF-----------KYNDLGALA 406
Query: 103 LFDTKIAISSCNVTKKCFYSIQTSPQGSVGSGLMKTLVLQKV--LTMILSLKAVIRV 157
++ AI++ K+ FY+ G GLM T L ++ L+MILS ++ ++V
Sbjct: 407 YLGSERAIATIRSGKRTFYT---------GGGLM-TFYLWRILYLSMILSARSRLKV 453
>pdb|1OF5|A Chain A, Crystal Structure Of Mex67-mtr2
Length = 221
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 491 RFPIGQDQIFVTFQVIPSSRYH-RDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEI 549
R IGQ+ I F+ +P +++H ++Q + ++ E+IS Q I G I + G + +T E+
Sbjct: 86 RLSIGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQ-INGFVITLHGFFEETGKPEL 144
Query: 550 Q 550
+
Sbjct: 145 E 145
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 205 DYYQILG--ISKNSSAKEIKKAYYELAKKYHPDTNKTDPN-----ASKKFHEVSEAYEVL 257
+Y+++ G I + + L K++HPD T A ++ ++++AY+ L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTL 64
Query: 258 SDDTKRQEY 266
D +R EY
Sbjct: 65 KDPLRRAEY 73
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 221 IKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEY 266
++K Y +L ++HPD + S++ +++AY L D +R +Y
Sbjct: 27 LRKEYRQLQAQHHPDMAQ---QGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 221 IKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEY 266
++K Y +L ++HPD + S++ +++AY L D +R +Y
Sbjct: 35 LRKEYRQLQAQHHPDMAQ---QGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|3FBS|A Chain A, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
pdb|3FBS|B Chain B, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
Length = 297
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 378 GSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQG 430
GS E I++ID G + + V D P+ G R G+ C YC G
Sbjct: 84 GSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHG 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,998,266
Number of Sequences: 62578
Number of extensions: 798935
Number of successful extensions: 1949
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 47
length of query: 644
length of database: 14,973,337
effective HSP length: 105
effective length of query: 539
effective length of database: 8,402,647
effective search space: 4529026733
effective search space used: 4529026733
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)