Query psy11884
Match_columns 644
No_of_seqs 396 out of 2946
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 21:24:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 3.2E-85 6.9E-90 693.0 36.8 358 202-636 2-370 (371)
2 PRK14288 chaperone protein Dna 100.0 1.8E-74 4E-79 622.4 39.2 335 204-603 3-345 (369)
3 PRK14296 chaperone protein Dna 100.0 3.1E-74 6.8E-79 620.9 38.6 342 203-604 3-362 (372)
4 PRK14286 chaperone protein Dna 100.0 1.6E-73 3.4E-78 615.7 38.7 347 203-604 3-358 (372)
5 PRK14298 chaperone protein Dna 100.0 1.2E-72 2.6E-77 609.6 38.0 361 203-637 4-377 (377)
6 PRK14284 chaperone protein Dna 100.0 1.4E-72 3E-77 612.2 38.0 373 205-639 2-390 (391)
7 PRK14276 chaperone protein Dna 100.0 2.6E-72 5.7E-77 607.9 39.3 363 203-636 3-378 (380)
8 PRK14277 chaperone protein Dna 100.0 4.4E-72 9.5E-77 607.3 39.9 349 203-604 4-366 (386)
9 PRK14297 chaperone protein Dna 100.0 5.2E-72 1.1E-76 605.7 40.4 365 203-636 3-380 (380)
10 PRK14287 chaperone protein Dna 100.0 4.7E-72 1E-76 604.0 39.2 354 203-636 3-369 (371)
11 PRK14280 chaperone protein Dna 100.0 4.8E-72 1E-76 605.1 39.2 359 203-636 3-374 (376)
12 PRK14278 chaperone protein Dna 100.0 4.9E-72 1.1E-76 605.2 38.9 361 204-636 3-376 (378)
13 PRK14285 chaperone protein Dna 100.0 5.8E-72 1.3E-76 602.1 38.2 347 204-608 3-358 (365)
14 PRK14279 chaperone protein Dna 100.0 8.2E-72 1.8E-76 605.8 38.1 361 203-604 8-379 (392)
15 PRK14301 chaperone protein Dna 100.0 1.5E-71 3.2E-76 600.6 37.4 340 203-604 3-351 (373)
16 PTZ00037 DnaJ_C chaperone prot 100.0 1.2E-71 2.6E-76 607.5 36.1 323 201-603 25-366 (421)
17 PRK14295 chaperone protein Dna 100.0 7.4E-71 1.6E-75 597.8 39.2 351 203-603 8-372 (389)
18 PRK14294 chaperone protein Dna 100.0 9E-71 2E-75 593.4 37.7 341 202-604 2-351 (366)
19 PRK14282 chaperone protein Dna 100.0 1.3E-70 2.7E-75 592.9 38.2 346 203-604 3-364 (369)
20 PRK10767 chaperone protein Dna 100.0 1.7E-70 3.7E-75 592.4 38.3 336 203-603 3-348 (371)
21 PRK14281 chaperone protein Dna 100.0 2.3E-70 5E-75 595.6 39.1 378 204-636 3-397 (397)
22 PRK14291 chaperone protein Dna 100.0 1.6E-69 3.6E-74 586.5 38.2 359 204-611 3-378 (382)
23 PRK14300 chaperone protein Dna 100.0 2.7E-69 5.8E-74 583.0 39.0 341 204-603 3-352 (372)
24 PRK14283 chaperone protein Dna 100.0 8.5E-68 1.8E-72 572.5 37.7 341 202-603 3-356 (378)
25 PRK14292 chaperone protein Dna 100.0 1.7E-67 3.6E-72 569.2 39.4 357 204-637 2-370 (371)
26 PRK14290 chaperone protein Dna 100.0 1.8E-67 3.9E-72 567.6 38.2 343 204-604 3-357 (365)
27 TIGR02349 DnaJ_bact chaperone 100.0 1.2E-67 2.7E-72 567.0 36.7 340 205-603 1-353 (354)
28 PRK14289 chaperone protein Dna 100.0 2.1E-67 4.6E-72 571.0 38.1 366 203-635 4-385 (386)
29 PRK14293 chaperone protein Dna 100.0 2.6E-66 5.7E-71 560.2 36.9 339 204-604 3-355 (374)
30 KOG0712|consensus 100.0 9.6E-63 2.1E-67 515.4 25.4 318 203-601 3-337 (337)
31 PRK14299 chaperone protein Dna 100.0 4.8E-53 1E-57 442.9 31.2 279 203-603 3-286 (291)
32 PRK10266 curved DNA-binding pr 100.0 2.1E-50 4.6E-55 425.7 32.1 282 203-603 3-293 (306)
33 KOG0715|consensus 100.0 9.8E-38 2.1E-42 325.9 15.5 244 204-528 43-288 (288)
34 KOG0713|consensus 100.0 3.1E-38 6.6E-43 327.5 8.7 304 202-591 14-328 (336)
35 TIGR03835 termin_org_DnaJ term 100.0 2E-34 4.4E-39 323.0 28.5 149 380-585 658-813 (871)
36 KOG0714|consensus 99.8 4.5E-19 9.7E-24 182.3 18.7 290 203-568 2-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.8 3.3E-19 7.1E-24 153.1 7.7 80 517-596 1-81 (81)
38 KOG0716|consensus 99.7 1.6E-17 3.5E-22 168.6 4.9 74 202-275 29-102 (279)
39 KOG0691|consensus 99.6 1.3E-16 2.8E-21 166.7 6.1 90 203-312 4-93 (296)
40 PTZ00341 Ring-infected erythro 99.6 2.9E-16 6.4E-21 181.1 7.4 72 202-274 571-642 (1136)
41 PF00226 DnaJ: DnaJ domain; I 99.6 3.8E-16 8.2E-21 127.5 4.4 63 205-267 1-64 (64)
42 KOG0718|consensus 99.6 7.8E-16 1.7E-20 165.3 6.8 74 202-275 7-83 (546)
43 PRK09430 djlA Dna-J like membr 99.6 1.2E-15 2.5E-20 158.7 6.8 125 120-260 132-263 (267)
44 KOG0717|consensus 99.6 1.6E-15 3.5E-20 162.9 5.3 73 202-274 6-79 (508)
45 PHA03102 Small T antigen; Revi 99.5 6.7E-15 1.4E-19 140.5 6.5 86 203-313 4-91 (153)
46 KOG0624|consensus 99.5 9.1E-15 2E-19 152.8 7.3 74 202-276 392-468 (504)
47 KOG0719|consensus 99.5 6.3E-15 1.4E-19 146.7 4.5 72 202-273 12-85 (264)
48 smart00271 DnaJ DnaJ molecular 99.5 2E-14 4.3E-19 115.5 6.5 59 204-262 1-60 (60)
49 cd06257 DnaJ DnaJ domain or J- 99.5 6E-14 1.3E-18 110.6 6.4 55 205-259 1-55 (55)
50 COG2214 CbpA DnaJ-class molecu 99.4 7.8E-14 1.7E-18 136.9 5.8 69 202-270 4-73 (237)
51 KOG0721|consensus 99.4 8.2E-14 1.8E-18 137.7 5.5 70 202-271 97-166 (230)
52 PRK14287 chaperone protein Dna 99.3 1.9E-12 4.2E-17 140.7 7.9 116 420-595 136-263 (371)
53 KOG0550|consensus 99.3 1.2E-12 2.5E-17 140.0 5.7 68 201-268 370-438 (486)
54 COG0484 DnaJ DnaJ-class molecu 99.3 1.7E-12 3.6E-17 139.3 6.5 118 420-597 140-267 (371)
55 PRK14289 chaperone protein Dna 99.3 4.1E-12 9E-17 138.8 9.4 121 420-600 152-284 (386)
56 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.3 4.4E-12 9.6E-17 105.0 6.0 61 408-468 1-66 (66)
57 PRK14293 chaperone protein Dna 99.3 7.7E-12 1.7E-16 136.2 8.6 140 399-600 122-273 (374)
58 PRK14285 chaperone protein Dna 99.3 5.8E-12 1.3E-16 136.7 7.4 143 394-598 118-270 (365)
59 PRK14279 chaperone protein Dna 99.3 1.2E-11 2.6E-16 135.5 9.1 118 419-596 170-295 (392)
60 PRK14301 chaperone protein Dna 99.2 1E-11 2.3E-16 135.1 7.8 141 394-596 116-266 (373)
61 PRK05014 hscB co-chaperone Hsc 99.2 1E-11 2.3E-16 121.3 6.2 64 205-268 2-72 (171)
62 PRK14286 chaperone protein Dna 99.2 1.8E-11 3.9E-16 133.3 7.7 138 394-593 122-269 (372)
63 PRK14297 chaperone protein Dna 99.2 1.6E-11 3.5E-16 134.0 7.3 113 420-592 146-270 (380)
64 KOG0722|consensus 99.2 7E-12 1.5E-16 126.3 3.5 67 203-270 32-98 (329)
65 PRK14280 chaperone protein Dna 99.2 2.3E-11 5E-16 132.6 7.7 114 420-593 141-266 (376)
66 KOG0720|consensus 99.2 8.7E-12 1.9E-16 134.6 4.2 66 202-268 233-298 (490)
67 PRK14276 chaperone protein Dna 99.2 2.6E-11 5.7E-16 132.3 7.9 116 420-595 144-271 (380)
68 PRK14298 chaperone protein Dna 99.2 2.8E-11 6.1E-16 131.9 7.3 114 420-593 139-264 (377)
69 PRK01356 hscB co-chaperone Hsc 99.2 2.1E-11 4.5E-16 118.6 5.5 65 204-268 2-71 (166)
70 PRK14296 chaperone protein Dna 99.2 8.3E-11 1.8E-15 128.1 10.8 112 420-591 147-270 (372)
71 PRK14282 chaperone protein Dna 99.2 3.8E-11 8.3E-16 130.5 7.6 114 420-593 150-275 (369)
72 PRK00294 hscB co-chaperone Hsc 99.2 3.3E-11 7.2E-16 117.8 6.2 67 202-268 2-75 (173)
73 PRK14292 chaperone protein Dna 99.2 5.2E-11 1.1E-15 129.6 8.2 120 420-600 137-268 (371)
74 PTZ00100 DnaJ chaperone protei 99.2 3.5E-11 7.5E-16 109.8 5.7 54 201-258 62-115 (116)
75 TIGR02349 DnaJ_bact chaperone 99.2 3.8E-11 8.3E-16 129.8 7.0 115 420-594 141-267 (354)
76 PRK14295 chaperone protein Dna 99.2 3.9E-11 8.5E-16 131.3 7.1 114 420-593 164-285 (389)
77 PRK03578 hscB co-chaperone Hsc 99.2 4.5E-11 9.8E-16 117.3 6.6 66 203-268 5-77 (176)
78 PRK14278 chaperone protein Dna 99.2 4.9E-11 1.1E-15 130.1 7.6 114 420-593 137-262 (378)
79 PRK14277 chaperone protein Dna 99.2 4.7E-11 1E-15 130.6 7.3 113 420-592 153-277 (386)
80 PRK10767 chaperone protein Dna 99.1 6.4E-11 1.4E-15 128.9 8.0 111 420-590 140-258 (371)
81 PRK14283 chaperone protein Dna 99.1 5.1E-11 1.1E-15 130.0 6.9 131 400-592 126-268 (378)
82 PRK14284 chaperone protein Dna 99.1 6.2E-11 1.3E-15 129.9 7.6 137 394-592 130-276 (391)
83 PRK14294 chaperone protein Dna 99.1 8.6E-11 1.9E-15 127.7 8.1 138 394-593 116-263 (366)
84 PRK14300 chaperone protein Dna 99.1 1.4E-10 3.1E-15 126.2 7.6 137 394-592 117-263 (372)
85 PRK14288 chaperone protein Dna 99.1 1.2E-10 2.6E-15 126.7 6.9 111 421-593 139-257 (369)
86 PRK14281 chaperone protein Dna 99.1 1.1E-10 2.4E-15 128.0 6.2 113 420-593 161-285 (397)
87 PRK14291 chaperone protein Dna 99.0 3.3E-10 7.1E-15 123.8 8.0 113 420-593 154-274 (382)
88 PTZ00037 DnaJ_C chaperone prot 99.0 4.4E-10 9.6E-15 124.0 6.9 114 420-593 148-273 (421)
89 PHA02624 large T antigen; Prov 99.0 3.8E-10 8.2E-15 127.5 5.2 60 203-266 10-71 (647)
90 PRK14290 chaperone protein Dna 98.9 3.3E-09 7.1E-14 115.4 9.7 110 420-592 147-268 (365)
91 COG5407 SEC63 Preprotein trans 98.9 8.3E-10 1.8E-14 118.8 2.7 69 203-271 97-170 (610)
92 KOG1150|consensus 98.8 8.8E-09 1.9E-13 100.9 6.9 62 203-264 52-114 (250)
93 PRK14299 chaperone protein Dna 98.8 2E-08 4.4E-13 106.0 9.5 75 511-592 125-199 (291)
94 PLN03165 chaperone protein dna 98.6 6.4E-08 1.4E-12 88.0 6.4 59 405-472 41-100 (111)
95 PRK10266 curved DNA-binding pr 98.6 1.3E-07 2.9E-12 100.5 9.5 79 513-591 115-206 (306)
96 PRK01773 hscB co-chaperone Hsc 98.6 5.3E-08 1.2E-12 95.4 5.9 65 204-268 2-73 (173)
97 TIGR00714 hscB Fe-S protein as 98.6 6.6E-08 1.4E-12 93.4 5.1 53 216-268 3-60 (157)
98 COG5269 ZUO1 Ribosome-associat 98.3 3.2E-07 7E-12 93.7 3.6 71 200-270 39-114 (379)
99 KOG0568|consensus 98.1 1.3E-06 2.7E-11 87.6 2.4 56 202-258 45-101 (342)
100 TIGR02642 phage_xxxx uncharact 98.1 3.2E-06 6.9E-11 83.6 4.8 49 444-493 99-149 (186)
101 KOG1789|consensus 97.9 9.2E-06 2E-10 94.9 5.3 55 201-258 1278-1336(2235)
102 COG1076 DjlA DnaJ-domain-conta 97.7 2.7E-05 5.9E-10 76.4 4.4 104 118-257 63-173 (174)
103 TIGR03835 termin_org_DnaJ term 97.7 6.4E-05 1.4E-09 87.0 6.4 70 204-274 2-71 (871)
104 KOG0723|consensus 97.6 5.9E-05 1.3E-09 67.6 4.5 59 199-261 51-109 (112)
105 COG1107 Archaea-specific RecJ- 97.5 4.8E-05 1E-09 85.2 3.3 67 406-473 3-83 (715)
106 PF01556 CTDII: DnaJ C termina 97.3 0.00055 1.2E-08 58.8 5.9 33 474-506 27-69 (81)
107 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.1 0.00045 9.7E-09 57.3 3.5 42 425-471 1-54 (66)
108 KOG0712|consensus 97.1 0.00064 1.4E-08 73.0 5.5 49 543-592 202-250 (337)
109 KOG0715|consensus 96.2 0.0063 1.4E-07 64.6 5.4 108 421-596 163-278 (288)
110 KOG2813|consensus 96.0 0.0031 6.8E-08 66.4 1.6 21 406-432 188-208 (406)
111 PLN03165 chaperone protein dna 95.9 0.0062 1.4E-07 55.7 3.3 39 420-469 39-86 (111)
112 KOG2813|consensus 95.9 0.0068 1.5E-07 64.0 3.8 26 446-474 247-272 (406)
113 COG1107 Archaea-specific RecJ- 95.8 0.0083 1.8E-07 67.8 4.4 58 405-469 18-106 (715)
114 KOG3192|consensus 94.9 0.021 4.6E-07 54.9 3.2 65 203-267 7-78 (168)
115 KOG0431|consensus 93.6 0.057 1.2E-06 60.9 3.6 51 207-257 391-448 (453)
116 TIGR02642 phage_xxxx uncharact 90.8 0.14 2.9E-06 51.2 2.0 29 405-434 99-127 (186)
117 COG1076 DjlA DnaJ-domain-conta 90.1 0.22 4.7E-06 49.1 2.7 51 218-268 17-72 (174)
118 PF03656 Pam16: Pam16; InterP 89.5 0.42 9.2E-06 44.9 4.0 57 201-261 55-111 (127)
119 KOG2824|consensus 86.8 0.74 1.6E-05 48.3 4.2 64 389-465 217-280 (281)
120 PRK14714 DNA polymerase II lar 81.2 2.2 4.8E-05 53.1 5.5 76 387-477 642-728 (1337)
121 TIGR00310 ZPR1_znf ZPR1 zinc f 77.4 15 0.00032 37.1 9.1 26 533-563 74-100 (192)
122 smart00709 Zpr1 Duplicated dom 76.7 16 0.00034 35.8 8.9 26 533-563 75-100 (160)
123 PF11833 DUF3353: Protein of u 76.5 3.8 8.2E-05 41.3 4.7 40 213-260 1-40 (194)
124 TIGR00630 uvra excinuclease AB 72.3 2.5 5.4E-05 51.9 2.7 27 446-472 738-773 (924)
125 PF13446 RPT: A repeated domai 72.3 4.8 0.0001 32.7 3.5 29 202-230 3-31 (62)
126 PRK04023 DNA polymerase II lar 70.6 4.6 0.0001 49.3 4.3 71 387-474 608-679 (1121)
127 KOG2824|consensus 69.5 4.8 0.00011 42.4 3.7 37 423-470 230-274 (281)
128 cd03031 GRX_GRX_like Glutaredo 66.5 5.8 0.00013 38.2 3.3 23 406-434 100-122 (147)
129 PRK00349 uvrA excinuclease ABC 64.5 5.3 0.00012 49.2 3.3 20 459-480 762-781 (943)
130 TIGR00630 uvra excinuclease AB 63.9 3.3 7.1E-05 50.9 1.3 34 423-456 737-771 (924)
131 TIGR00340 zpr1_rel ZPR1-relate 63.1 22 0.00048 34.9 6.7 25 533-562 72-97 (163)
132 KOG0724|consensus 61.9 6 0.00013 42.7 2.8 56 215-270 3-62 (335)
133 cd03031 GRX_GRX_like Glutaredo 60.1 11 0.00025 36.2 4.1 37 423-470 100-145 (147)
134 PLN03071 GTP-binding nuclear p 59.9 17 0.00038 36.6 5.6 75 65-139 84-166 (219)
135 PRK00635 excinuclease ABC subu 55.2 6.9 0.00015 51.2 2.1 27 446-472 1609-1644(1809)
136 cd07311 terB_like_1 tellurium 54.7 5.9 0.00013 38.3 1.1 46 118-169 89-134 (150)
137 smart00176 RAN Ran (Ras-relate 52.9 34 0.00074 34.2 6.3 69 66-141 67-150 (200)
138 PRK03564 formate dehydrogenase 52.1 14 0.0003 40.0 3.4 21 446-466 214-234 (309)
139 PF03367 zf-ZPR1: ZPR1 zinc-fi 51.2 23 0.0005 34.6 4.6 12 423-434 2-13 (161)
140 COG1198 PriA Primosomal protei 48.0 13 0.00029 44.5 2.8 61 394-467 419-484 (730)
141 COG0178 UvrA Excinuclease ATPa 46.8 15 0.00033 44.3 3.0 33 445-479 731-772 (935)
142 PF14687 DUF4460: Domain of un 46.1 32 0.00069 31.7 4.4 47 214-260 4-54 (112)
143 PF03833 PolC_DP2: DNA polymer 41.8 8.6 0.00019 46.3 0.0 50 405-470 655-704 (900)
144 cd00877 Ran Ran (Ras-related n 40.3 67 0.0014 30.4 5.9 76 66-141 72-155 (166)
145 COG0178 UvrA Excinuclease ATPa 39.0 16 0.00035 44.1 1.6 19 141-159 309-327 (935)
146 PRK00635 excinuclease ABC subu 38.8 12 0.00025 49.2 0.5 32 424-455 1609-1641(1809)
147 PF07191 zinc-ribbons_6: zinc- 38.4 31 0.00068 29.3 2.8 50 407-466 3-58 (70)
148 PF09538 FYDLN_acid: Protein o 38.4 18 0.00038 33.2 1.5 25 404-428 8-32 (108)
149 PF13453 zf-TFIIB: Transcripti 37.7 38 0.00082 25.2 2.9 26 425-452 2-27 (41)
150 TIGR01562 FdhE formate dehydro 35.9 34 0.00073 37.0 3.4 51 408-466 187-260 (305)
151 PRK05580 primosome assembly pr 34.4 42 0.00092 40.0 4.2 61 394-467 365-430 (679)
152 PRK14873 primosome assembly pr 34.3 28 0.00062 41.5 2.7 59 394-467 368-431 (665)
153 PRK00564 hypA hydrogenase nick 33.7 45 0.00098 30.8 3.4 39 394-432 59-98 (117)
154 PRK14559 putative protein seri 33.0 25 0.00053 41.8 1.9 49 406-467 2-50 (645)
155 COG5552 Uncharacterized conser 32.6 1.3E+02 0.0029 25.8 5.7 33 204-236 3-35 (88)
156 TIGR00100 hypA hydrogenase nic 31.4 57 0.0012 30.0 3.7 20 394-413 58-78 (115)
157 TIGR02300 FYDLN_acid conserved 31.2 27 0.00059 32.9 1.5 27 404-430 8-34 (129)
158 PF13719 zinc_ribbon_5: zinc-r 31.2 37 0.0008 24.9 1.9 7 444-450 25-31 (37)
159 PF04246 RseC_MucC: Positive r 30.2 88 0.0019 29.2 4.8 23 472-494 40-62 (135)
160 TIGR00595 priA primosomal prot 29.8 34 0.00074 39.3 2.3 62 394-468 197-263 (505)
161 PF05099 TerB: Tellurite resis 29.5 29 0.00063 32.0 1.4 40 121-166 100-139 (140)
162 PRK12380 hydrogenase nickel in 29.3 62 0.0013 29.7 3.5 21 394-414 58-79 (113)
163 cd04120 Rab12 Rab12 subfamily. 28.7 1.6E+02 0.0035 29.4 6.7 69 66-140 72-158 (202)
164 cd01875 RhoG RhoG subfamily. 27.5 1.3E+02 0.0028 29.3 5.8 75 66-140 74-172 (191)
165 PF07092 DUF1356: Protein of u 27.3 31 0.00066 35.9 1.2 11 574-584 201-211 (238)
166 COG2214 CbpA DnaJ-class molecu 27.1 1.4E+02 0.0031 28.6 5.9 74 517-592 150-223 (237)
167 PRK03564 formate dehydrogenase 26.7 73 0.0016 34.5 4.0 55 404-466 186-260 (309)
168 cd01874 Cdc42 Cdc42 subfamily. 26.4 93 0.002 29.9 4.4 68 65-139 71-169 (175)
169 PRK03681 hypA hydrogenase nick 26.2 75 0.0016 29.2 3.5 39 394-432 58-97 (114)
170 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 25.5 1.5E+02 0.0033 28.9 5.8 70 65-141 75-176 (182)
171 PF08455 SNF2_assoc: Bacterial 25.0 2.8E+02 0.0062 30.3 8.4 91 43-164 236-329 (377)
172 PF01155 HypA: Hydrogenase exp 24.8 60 0.0013 29.7 2.6 38 394-432 58-96 (113)
173 PF12791 RsgI_N: Anti-sigma fa 24.8 1.3E+02 0.0028 23.7 4.2 36 531-566 4-39 (56)
174 cd01867 Rab8_Rab10_Rab13_like 24.8 1.9E+02 0.0042 27.0 6.2 76 66-141 75-161 (167)
175 PF14353 CpXC: CpXC protein 24.5 58 0.0013 30.1 2.5 11 423-433 2-12 (128)
176 cd04126 Rab20 Rab20 subfamily. 24.2 2.5E+02 0.0055 28.5 7.3 30 65-94 66-95 (220)
177 PF09723 Zn-ribbon_8: Zinc rib 23.8 62 0.0014 24.3 2.1 8 445-452 27-34 (42)
178 PF09862 DUF2089: Protein of u 23.3 58 0.0013 30.2 2.2 19 447-465 1-19 (113)
179 cd04125 RabA_like RabA-like su 23.3 2.6E+02 0.0056 26.8 6.9 73 65-137 71-154 (188)
180 PF12991 DUF3875: Domain of un 23.0 86 0.0019 25.3 2.7 25 573-597 26-52 (54)
181 cd04121 Rab40 Rab40 subfamily. 22.5 2.3E+02 0.005 27.9 6.4 65 66-137 78-159 (189)
182 PF03367 zf-ZPR1: ZPR1 zinc-fi 22.4 92 0.002 30.4 3.5 24 533-561 76-100 (161)
183 PF07282 OrfB_Zn_ribbon: Putat 22.0 70 0.0015 26.2 2.2 18 439-456 23-40 (69)
184 cd04144 Ras2 Ras2 subfamily. 21.8 2.4E+02 0.0051 27.3 6.3 68 66-136 70-154 (190)
185 PF07092 DUF1356: Protein of u 21.4 43 0.00092 34.9 1.0 12 422-433 38-49 (238)
186 cd01873 RhoBTB RhoBTB subfamil 21.3 1.9E+02 0.0041 28.6 5.6 74 65-139 86-190 (195)
187 PRK00349 uvrA excinuclease ABC 21.1 52 0.0011 40.9 1.8 35 422-456 738-773 (943)
188 COG1198 PriA Primosomal protei 21.0 57 0.0012 39.3 2.0 40 405-453 444-484 (730)
189 KOG4231|consensus 20.4 41 0.0009 38.6 0.7 15 43-60 552-566 (763)
190 PF03589 Antiterm: Antitermina 20.4 41 0.00089 30.1 0.5 11 423-433 6-16 (95)
191 cd04133 Rop_like Rop subfamily 20.2 1.9E+02 0.0041 28.1 5.2 69 65-140 71-168 (176)
192 TIGR00595 priA primosomal prot 20.2 64 0.0014 37.1 2.2 41 405-454 222-263 (505)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-85 Score=692.97 Aligned_cols=358 Identities=37% Similarity=0.638 Sum_probs=314.6
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCC
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGA 281 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~ 281 (644)
+.+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||||||||+||++||+||.++.+.+++++
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg 81 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG 81 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999998886332211
Q ss_pred CCCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccC
Q psy11884 282 SRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIG 361 (644)
Q Consensus 282 ~~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~g 361 (644)
. ++.+| .+ |+.|||++|||+++++ ...
T Consensus 82 ~---g~~~f------gg--~~~DIF~~~FgGg~~~-------------~~~----------------------------- 108 (371)
T COG0484 82 F---GFGGF------GG--DFGDIFEDFFGGGGGG-------------RRR----------------------------- 108 (371)
T ss_pred C---CcCCC------CC--CHHHHHHHhhcCCCcc-------------cCC-----------------------------
Confidence 1 11111 11 7899999999743211 000
Q ss_pred CccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeee--c
Q psy11884 362 GISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTT--G 439 (644)
Q Consensus 362 g~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~--G 439 (644)
.+...+|.|+.+.|+|||||||.|++++|.+++...|+.|+|+|+++++...+|+.|+|+|.+.+.. |
T Consensus 109 ----------~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g 178 (371)
T COG0484 109 ----------PNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTG 178 (371)
T ss_pred ----------CCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeee
Confidence 0012468899999999999999999999999999999999999999999999999999999876555 8
Q ss_pred CceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCC
Q psy11884 440 PFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSR 510 (644)
Q Consensus 440 ~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~ 510 (644)
.+.++++|+.|+|+|++|+++|+.|+|.|++.+.++++|+||||+.+|++|+++++| |||||.|.|++|+.
T Consensus 179 ~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~ 258 (371)
T COG0484 179 FFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPI 258 (371)
T ss_pred EEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCC
Confidence 788999999999999999999999999999999999999999999999999999743 79999999999999
Q ss_pred ccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCC
Q psy11884 511 YHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPS 590 (644)
Q Consensus 511 F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls 590 (644)
|+|+|+||+++++|++.+|++|+++.|+||||+ ++|+||+|+++|++++|+|+|||..++..+|||||+|+|++|++|+
T Consensus 259 F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls 337 (371)
T COG0484 259 FERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLS 337 (371)
T ss_pred eEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCC
Confidence 999999999999999999999999999999999 7999999999999999999999997777889999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHHH
Q psy11884 591 EKQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFIK 636 (644)
Q Consensus 591 ~~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (644)
.+|++||++|+....+ ... +...||++||+|.+
T Consensus 338 ~~q~~lL~~~~~~~~~--~~~-----------~~~~~~~k~k~~f~ 370 (371)
T COG0484 338 DEQKELLEEFAKSLGE--GPE-----------QSPGFFDKLKNFFK 370 (371)
T ss_pred HHHHHHHHHHHHhhcc--ccc-----------cChhhhHHhHhhcc
Confidence 9999999999975411 111 11189999988854
No 2
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-74 Score=622.36 Aligned_cols=335 Identities=29% Similarity=0.515 Sum_probs=292.3
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASR 283 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~ 283 (644)
.|||+||||+++||.+|||+|||+||++||||+|+.+++|+++|++|++||+||+||.+|+.||+||++++..+ + +
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~--~-~- 78 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQA--G-A- 78 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccC--C-C-
Confidence 69999999999999999999999999999999998778899999999999999999999999999998765421 0 0
Q ss_pred CCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCCc
Q psy11884 284 STTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGI 363 (644)
Q Consensus 284 ~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg~ 363 (644)
+ ..+|... | .+++++|..+||.++.. +. +
T Consensus 79 ~--~~~~~~~--f---~~~~~~F~~~fg~g~~~---------------~~---------------~-------------- 107 (369)
T PRK14288 79 S--QSDFSDF--F---EDLGSFFEDAFGFGARG---------------SK---------------R-------------- 107 (369)
T ss_pred C--ccccccc--h---hhHHHHHHhhcCCCCcc---------------cC---------------c--------------
Confidence 0 0112100 0 13455666666521100 00 0
Q ss_pred cchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCcee
Q psy11884 364 SITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIM 443 (644)
Q Consensus 364 ~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~ 443 (644)
....++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+ ...+|+.|+|+|+++...|.+++
T Consensus 108 ---------~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~g~~~~ 177 (369)
T PRK14288 108 ---------QKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK-ALETCKQCNGQGQVFMRQGFMSF 177 (369)
T ss_pred ---------CCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC-CCcCCCCCCCCcEEEEEeceEEE
Confidence 00124778999999999999999999999999999999999999876 67899999999998877788888
Q ss_pred eeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC--------ceEEEEEEeecCCCccccC
Q psy11884 444 KTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ--------DQIFVTFQVIPSSRYHRDQ 515 (644)
Q Consensus 444 ~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g--------gDL~v~i~vkph~~F~R~G 515 (644)
+++|+.|.|+|+++..+|+.|+|.|++.+.++++|.||||+.+|++|+|++.| |||+|+|++++|+.|+|+|
T Consensus 178 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G 257 (369)
T PRK14288 178 AQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREG 257 (369)
T ss_pred EEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeC
Confidence 88999999999999999999999999999999999999999999999999753 6999999999999999999
Q ss_pred CCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHH
Q psy11884 516 SDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKD 595 (644)
Q Consensus 516 ~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q~~ 595 (644)
+||+++++|+|.|||+|+++.|+||||+.+.|+||+++++|++++|+|+|||..+...+|||||+|+|.+|+.|+++|++
T Consensus 258 ~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~ 337 (369)
T PRK14288 258 CDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQE 337 (369)
T ss_pred CEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 99999999999999999999999999998899999999999999999999998665568999999999999999999999
Q ss_pred HHHHHhhh
Q psy11884 596 LVREFFSV 603 (644)
Q Consensus 596 lL~~l~~~ 603 (644)
+|++|+..
T Consensus 338 ~l~~~~~~ 345 (369)
T PRK14288 338 LLEKLHAS 345 (369)
T ss_pred HHHHHHhh
Confidence 99999974
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.1e-74 Score=620.91 Aligned_cols=342 Identities=31% Similarity=0.553 Sum_probs=290.7
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
.+|||++|||+++|+.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||+||+.||+||++++..+. +.+
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~-~~~ 80 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSS-GFS 80 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCC-CcC
Confidence 4799999999999999999999999999999999974 78999999999999999999999999999987654210 100
Q ss_pred CCCCccccccccC---CCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccc
Q psy11884 283 RSTTAEDYMHRWN---FKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTC 359 (644)
Q Consensus 283 ~~~~~~~f~~~~~---~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~ 359 (644)
+ +..+|...|. ..+..+++|+|+.|||+++ . ..
T Consensus 81 ~--~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~-~---------------~~-------------------------- 116 (372)
T PRK14296 81 S--NFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNK-S---------------DY-------------------------- 116 (372)
T ss_pred c--CCCccccccccccccccccchhhhhhhcCCCc-c---------------CC--------------------------
Confidence 0 0011110000 0011245677888876311 0 00
Q ss_pred cCCccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEe--e
Q psy11884 360 IGGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETT--T 437 (644)
Q Consensus 360 ~gg~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~--~ 437 (644)
....++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+....+|+.|+|+|+++. +
T Consensus 117 -------------~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~ 183 (372)
T PRK14296 117 -------------QRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKN 183 (372)
T ss_pred -------------CCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEe
Confidence 0012478999999999999999999999999999999999999999888999999999997643 4
Q ss_pred ecCce--eeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEee
Q psy11884 438 TGPFI--MKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVI 506 (644)
Q Consensus 438 ~G~~~--~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vk 506 (644)
+||++ ++++|+.|+|+|++++++|+.|+|.|++.+.++++|.||||+++|++|+|++.| |||+|+|+++
T Consensus 184 ~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~ 263 (372)
T PRK14296 184 MGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLK 263 (372)
T ss_pred ccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEe
Confidence 68864 456999999999999999999999999999999999999999999999999742 6999999999
Q ss_pred cCCCcccc-CCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCC-CCCCCccEEEEEEEE
Q psy11884 507 PSSRYHRD-QSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNR-NSSGYGHHFVHVKIE 584 (644)
Q Consensus 507 ph~~F~R~-G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~-~~~~rGDL~V~f~V~ 584 (644)
||+.|+|+ |+||+++++|+|.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||.. ++..+|||||+|+|.
T Consensus 264 ~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~ 342 (372)
T PRK14296 264 ESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIV 342 (372)
T ss_pred CCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEE
Confidence 99999995 89999999999999999999999999998 7999999999999999999999954 344689999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhC
Q psy11884 585 VPRYPSEKQKDLVREFFSVE 604 (644)
Q Consensus 585 fP~~Ls~~q~~lL~~l~~~~ 604 (644)
||+.|+++|+++|++|+...
T Consensus 343 ~P~~Ls~~q~~~l~~l~~~~ 362 (372)
T PRK14296 343 VPKNLSKKEKELIEQIYEQT 362 (372)
T ss_pred CCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999754
No 4
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-73 Score=615.68 Aligned_cols=347 Identities=33% Similarity=0.584 Sum_probs=300.9
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+||++++..+..+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~- 81 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGF- 81 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCC-
Confidence 4699999999999999999999999999999999987788999999999999999999999999999987764321110
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGG 362 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg 362 (644)
+. .+|. .+. ....+++|+|++|||+++.+ . ..+. +
T Consensus 82 -~~--~~~~-~~~-~~~~~~~d~f~~ffgg~~~~-----------~-~~~~---------------------~------- 116 (372)
T PRK14286 82 -GQ--GAYT-DFS-DIFGDFGDIFGDFFGGGRGG-----------G-SGGG---------------------R------- 116 (372)
T ss_pred -CC--CCcc-ccc-ccccchhhHHHHhhCCCccC-----------C-Cccc---------------------c-------
Confidence 00 0111 010 00135779999999852100 0 0000 0
Q ss_pred ccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCce
Q psy11884 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFI 442 (644)
Q Consensus 363 ~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~ 442 (644)
.....++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+....+|+.|+|+|+++...|+++
T Consensus 117 ---------~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~ 187 (372)
T PRK14286 117 ---------RSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFS 187 (372)
T ss_pred ---------cCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEE
Confidence 00013578999999999999999999999999999999999999998888899999999999887788888
Q ss_pred eeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCCccc
Q psy11884 443 MKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSRYHR 513 (644)
Q Consensus 443 ~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~F~R 513 (644)
++++|+.|+|+|++++++|+.|+|.|++.+.++++|.||||+.+|++|+|+++| |||+|+|+++||+.|+|
T Consensus 188 ~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R 267 (372)
T PRK14286 188 VATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFER 267 (372)
T ss_pred EEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEE
Confidence 889999999999999999999999999999999999999999999999999742 79999999999999999
Q ss_pred cCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 514 DQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 514 ~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
+|+||+++++|+|.+||+|+++.|+||||+.|.|+||+++++|++++|+|+|||..+...+|||||+|+|.||+.|+++|
T Consensus 268 ~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~q 347 (372)
T PRK14286 268 QGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQ 347 (372)
T ss_pred ecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHH
Confidence 99999999999999999999999999999988999999999999999999999986655789999999999999999999
Q ss_pred HHHHHHHhhhC
Q psy11884 594 KDLVREFFSVE 604 (644)
Q Consensus 594 ~~lL~~l~~~~ 604 (644)
+++|++|+..+
T Consensus 348 k~~l~~l~~~~ 358 (372)
T PRK14286 348 RELIEEFARES 358 (372)
T ss_pred HHHHHHHHHhc
Confidence 99999999764
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-72 Score=609.55 Aligned_cols=361 Identities=35% Similarity=0.617 Sum_probs=303.7
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
.+|||+||||+++|+.+|||+|||+||++||||+|+. +.|+++|++|++||++|+||.+|+.||+||+++.+.+. +..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~-~~~ 81 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQY-SAE 81 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccccccc-Ccc
Confidence 4699999999999999999999999999999999974 78899999999999999999999999999987654221 000
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGG 362 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg 362 (644)
..|.. ..+ .++.|+|++|||+++ . ...
T Consensus 82 -----~~~~~-~~~---~~~~d~f~~~Fgg~~-~--------------~~~----------------------------- 108 (377)
T PRK14298 82 -----DIFRG-ADF---GGFGDIFEMFFGGGG-R--------------RGR----------------------------- 108 (377)
T ss_pred -----ccccc-CCc---CcchhhhHhhhcCCC-c--------------cCC-----------------------------
Confidence 00100 001 245688999997421 0 000
Q ss_pred ccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeee----
Q psy11884 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTT---- 438 (644)
Q Consensus 363 ~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~---- 438 (644)
....+|.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+....+|+.|+|+|+++...
T Consensus 109 ----------~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~ 178 (377)
T PRK14298 109 ----------MGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPL 178 (377)
T ss_pred ----------CCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCc
Confidence 001247899999999999999999999999999999999999999999899999999999765432
Q ss_pred cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCC
Q psy11884 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSS 509 (644)
Q Consensus 439 G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~ 509 (644)
|.++++++|+.|+|+|++++.+|+.|+|.|++.+.++++|.||||+++|++|+|++.| |||+|+|+++||+
T Consensus 179 g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~ 258 (377)
T PRK14298 179 GQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHD 258 (377)
T ss_pred eeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCC
Confidence 3455678999999999999999999999999999999999999999999999999743 6999999999999
Q ss_pred CccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCC
Q psy11884 510 RYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYP 589 (644)
Q Consensus 510 ~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~L 589 (644)
.|+|+|+||+++++|+|.+||+|+++.|+||||+ +.|+||+|+++|++++|+|+|||..++..+|||||+|+|.+|+.|
T Consensus 259 ~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~l 337 (377)
T PRK14298 259 YFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKL 337 (377)
T ss_pred CeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCC
Confidence 9999999999999999999999999999999998 699999999999999999999998665568999999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHHHH
Q psy11884 590 SEKQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFIKS 637 (644)
Q Consensus 590 s~~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (644)
+++++++|+++++.+.... .. + -+.+-..||.++++|++|
T Consensus 338 s~~~~~ll~~l~~~~~~~~--~~----~--~~~~~~~~~~~~~~~~~~ 377 (377)
T PRK14298 338 TQEQKELLREFDELSNGKN--PS----K--AGKKKKGIFDKVKDAFES 377 (377)
T ss_pred CHHHHHHHHHHHhhccccc--cc----c--cCcccccHHHHHHHHhcC
Confidence 9999999999996532110 00 0 111124788999988864
No 6
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-72 Score=612.15 Aligned_cols=373 Identities=34% Similarity=0.575 Sum_probs=307.4
Q ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCCC
Q psy11884 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASRS 284 (644)
Q Consensus 205 d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~~ 284 (644)
|||+||||+++||.+|||+|||+||++||||+|++++.|+++|++|++||++|+|+.+|+.||+||+++...+..+.+ +
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~-~ 80 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFG-G 80 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcC-C
Confidence 899999999999999999999999999999999887889999999999999999999999999999876532210000 0
Q ss_pred CCcccccc---cc--CCCCC-CChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhccccc
Q psy11884 285 TTAEDYMH---RW--NFKSS-VDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTT 358 (644)
Q Consensus 285 ~~~~~f~~---~~--~~~~~-~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~ 358 (644)
.+..++.. .+ .|... .+.+|+|+.|||+.+. .|++.. .+
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~--------------~~~~~~------------~~--------- 125 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGE--------------AFGMRG------------GP--------- 125 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccc--------------cccccc------------cC---------
Confidence 00000000 00 00000 0123566666653110 011000 00
Q ss_pred ccCCccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeee
Q psy11884 359 CIGGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTT 438 (644)
Q Consensus 359 ~~gg~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~ 438 (644)
....++.|+++.|.|||||+|+|+++++++++.+.|+.|+|+|+.++....+|+.|+|+|+++...
T Consensus 126 --------------~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~ 191 (391)
T PRK14284 126 --------------AGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR 191 (391)
T ss_pred --------------CCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe
Confidence 001357899999999999999999999999999999999999999988899999999999988778
Q ss_pred cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCC
Q psy11884 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSS 509 (644)
Q Consensus 439 G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~ 509 (644)
|+++++++|+.|+|+|++++++|+.|.|.|++.+.++++|.||||+++|++|+|+|+| |||+|+|+++||+
T Consensus 192 G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~ 271 (391)
T PRK14284 192 GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHP 271 (391)
T ss_pred ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCC
Confidence 9888889999999999999999999999999999999999999999999999999742 6999999999999
Q ss_pred CccccCCCeEEEEecCHhHhhcCCEEEEEeee-CcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCC
Q psy11884 510 RYHRDQSDIHTEESISISQAILGGTINVEGIY-GDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRY 588 (644)
Q Consensus 510 ~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLd-G~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~ 588 (644)
.|+|+|+||+++++|+|.+|++|++++|+|+| |..|.|+||+|+++|++++|+|+|||..++..+|||||+|+|.+|+.
T Consensus 272 ~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~ 351 (391)
T PRK14284 272 VFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQN 351 (391)
T ss_pred CceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCC
Confidence 99999999999999999999999999999999 66789999999999999999999999876557899999999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHHHHHh
Q psy11884 589 PSEKQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFIKSFL 639 (644)
Q Consensus 589 Ls~~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (644)
|+++|+++|++|++.+... . +.+...||++|++|++.|.
T Consensus 352 l~~~q~~ll~~l~~~~~~~------~------~~~~~~~~~~~~~~~~~~~ 390 (391)
T PRK14284 352 LSEEQKELLRQFAATEKAE------N------FPKKRSFLDKIKGFFSDFA 390 (391)
T ss_pred CCHHHHHHHHHHHhhcccc------c------CcccccHHHHHHHHHhhcc
Confidence 9999999999999653211 0 1111378999999988773
No 7
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-72 Score=607.91 Aligned_cols=363 Identities=37% Similarity=0.606 Sum_probs=303.8
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
.+|||++|||+++||.+|||+|||+||++||||+|++ +.|+++|++|++||++|+||.+|+.||+||++++..+..+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~ 81 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGA 81 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCC
Confidence 4699999999999999999999999999999999985 788999999999999999999999999999877643211100
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGG 362 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg 362 (644)
.+..+|... .+..+++|+|++|||+++.. .. |
T Consensus 82 --~~~~~~~~~---~~~~~~~d~f~~~fgg~~~~---------------~~---------------~------------- 113 (380)
T PRK14276 82 --GGFGGFDGS---GGFGGFEDIFSSFFGGGGAR---------------RN---------------P------------- 113 (380)
T ss_pred --CCCCCcccc---ccccchhhHHHHHhCccccc---------------cC---------------c-------------
Confidence 001111100 01135678999999742100 00 0
Q ss_pred ccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEee--e--
Q psy11884 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT--T-- 438 (644)
Q Consensus 363 ~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~--~-- 438 (644)
....++.|+++.|.|||||+|+|+++++++++.+.|+.|+|+|...+....+|+.|+|+|++... +
T Consensus 114 ----------~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~ 183 (380)
T PRK14276 114 ----------NAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPL 183 (380)
T ss_pred ----------CCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCC
Confidence 00124789999999999999999999999999999999999999988888999999999976543 2
Q ss_pred cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCC
Q psy11884 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSS 509 (644)
Q Consensus 439 G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~ 509 (644)
|++.++++|+.|+|+|++++.+|+.|+|.|++.+.++++|.||||+++|++|+|++.| |||+|+|+|+||+
T Consensus 184 G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~ 263 (380)
T PRK14276 184 GMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSK 263 (380)
T ss_pred ceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECc
Confidence 5566778999999999999999999999999999999999999999999999999743 6999999999999
Q ss_pred CccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCC
Q psy11884 510 RYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYP 589 (644)
Q Consensus 510 ~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~L 589 (644)
.|+|+|+||+++++|+|.+||+|+++.|+|+||+ +.|+||+|+++|++++|+|+|||..+...+|||||+|+|.||+.|
T Consensus 264 ~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l 342 (380)
T PRK14276 264 KFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKL 342 (380)
T ss_pred ceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCC
Confidence 9999999999999999999999999999999998 699999999999999999999998665568999999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHHH
Q psy11884 590 SEKQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFIK 636 (644)
Q Consensus 590 s~~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (644)
+++|+++|++|+..+.... .+ .+...|+++|++|++
T Consensus 343 ~~~q~~~l~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~ 378 (380)
T PRK14276 343 NDAQKEALKAFAKASGEKD-----VN------PKKKGFFDKVKDAFE 378 (380)
T ss_pred CHHHHHHHHHHHhhccccc-----cC------cccccHHHHHHHHhc
Confidence 9999999999996421100 00 011378888887765
No 8
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.4e-72 Score=607.30 Aligned_cols=349 Identities=36% Similarity=0.644 Sum_probs=294.8
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||.||+++.+.+..+.+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG 83 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence 46999999999999999999999999999999999877889999999999999999999999999999877643211111
Q ss_pred CCCCcccccc-ccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccC
Q psy11884 283 RSTTAEDYMH-RWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIG 361 (644)
Q Consensus 283 ~~~~~~~f~~-~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~g 361 (644)
+ .+..++.. .+.+. ..++.|+|++||++. |+ ......
T Consensus 84 ~-~~~~g~~~~~~~~~-~~~~~d~f~~~F~~~-fg----------g~~~~~----------------------------- 121 (386)
T PRK14277 84 G-FGQGGFGGGGFDFD-FGGFGDIFEDIFGDF-FG----------TGRRRA----------------------------- 121 (386)
T ss_pred C-cCCCCccccCcccc-ccchhHHHHHhhccc-cc----------CCCcCC-----------------------------
Confidence 0 00011110 01111 124568898888741 11 000000
Q ss_pred CccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEe--ee-
Q psy11884 362 GISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETT--TT- 438 (644)
Q Consensus 362 g~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~--~~- 438 (644)
.....++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+....+|+.|+|+|+++. ++
T Consensus 122 ----------~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~ 191 (386)
T PRK14277 122 ----------ETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTP 191 (386)
T ss_pred ----------CCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEecc
Confidence 00012578999999999999999999999999999999999999998888999999999997643 23
Q ss_pred -cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecC
Q psy11884 439 -GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPS 508 (644)
Q Consensus 439 -G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph 508 (644)
|.+++.++|+.|+|+|++++++|+.|+|.|++.+.++++|.||||+++|++|+|+++| |||+|+|+++||
T Consensus 192 ~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h 271 (386)
T PRK14277 192 FGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPH 271 (386)
T ss_pred CceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecC
Confidence 4556678999999999999999999999999999999999999999999999999742 699999999999
Q ss_pred CCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCC
Q psy11884 509 SRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRY 588 (644)
Q Consensus 509 ~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~ 588 (644)
+.|+|+|+||+++++|++.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..+...+|||||+|+|.||+.
T Consensus 272 ~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~ 350 (386)
T PRK14277 272 PLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKK 350 (386)
T ss_pred CCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCC
Confidence 99999999999999999999999999999999998 69999999999999999999999866557899999999999999
Q ss_pred CCHHHHHHHHHHhhhC
Q psy11884 589 PSEKQKDLVREFFSVE 604 (644)
Q Consensus 589 Ls~~q~~lL~~l~~~~ 604 (644)
|+++|+++|++|++.+
T Consensus 351 Ls~~qk~~l~~l~~~~ 366 (386)
T PRK14277 351 LTEKQKELLREFEKLS 366 (386)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999999643
No 9
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.2e-72 Score=605.74 Aligned_cols=365 Identities=33% Similarity=0.590 Sum_probs=306.4
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||+++++.+. +.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~-~~~ 81 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAG-GFG 81 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccC-CCC
Confidence 3699999999999999999999999999999999987788999999999999999999999999999987664211 100
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGG 362 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg 362 (644)
.. +|. .+.+....+++|+|++|||++ ++ +.+...
T Consensus 82 -~~---~~~-~~~~~~~~~~~d~f~~~fgg~-~g-----------~~~~~~----------------------------- 115 (380)
T PRK14297 82 -SG---GFG-GFDFSDMGGFGDIFDSFFGGG-FG-----------SSSRRR----------------------------- 115 (380)
T ss_pred -CC---CCC-CcCcccccchhHHHHHHhccC-cc-----------cccccc-----------------------------
Confidence 00 111 111111125779999999842 11 000000
Q ss_pred ccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEee--e--
Q psy11884 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT--T-- 438 (644)
Q Consensus 363 ~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~--~-- 438 (644)
....+|.|+++.|.|||||+|+|++++|.+++.+.|+.|+|+|..++....+|+.|+|+|+++.. +
T Consensus 116 ----------~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~ 185 (380)
T PRK14297 116 ----------NGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPL 185 (380)
T ss_pred ----------CCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCC
Confidence 00125789999999999999999999999999999999999999998889999999999976532 2
Q ss_pred cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecC---------CceEEEEEEeecCC
Q psy11884 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIG---------QDQIFVTFQVIPSS 509 (644)
Q Consensus 439 G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~---------ggDL~v~i~vkph~ 509 (644)
|.+.++.+|+.|+|+|.++..+|..|+|.|++.+.++++|.||||+.+|++|++++. .|||+|+|++++|+
T Consensus 186 G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~ 265 (380)
T PRK14297 186 GSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHK 265 (380)
T ss_pred ceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCC
Confidence 445678899999999999999999999999999999999999999999999999974 26999999999999
Q ss_pred CccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCC
Q psy11884 510 RYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYP 589 (644)
Q Consensus 510 ~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~L 589 (644)
.|+|+|+||+++++|+|.+||+|+++.|+|+||+ +.|+||+|+++|++++|+|+|||..++..+|||||+|+|.||+.|
T Consensus 266 ~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l 344 (380)
T PRK14297 266 TFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKL 344 (380)
T ss_pred CEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCC
Confidence 9999999999999999999999999999999997 699999999999999999999997665578999999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHHH
Q psy11884 590 SEKQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFIK 636 (644)
Q Consensus 590 s~~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (644)
+++|+++|++|+..+... .+ ..+ + ..||+++++|.|
T Consensus 345 s~~q~~~l~~~~~~~~~~----~~--~~~---~--~~~~~~~~~~~~ 380 (380)
T PRK14297 345 NSKQKEALTMFMEASGET----VD--GKE---K--KTIFEKIKKGFK 380 (380)
T ss_pred CHHHHHHHHHHHHhcCcc----cC--ccc---c--chHHHHHHHhhC
Confidence 999999999999764211 10 011 1 389999998764
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.7e-72 Score=604.05 Aligned_cols=354 Identities=34% Similarity=0.646 Sum_probs=302.0
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
..|||++|||+++||.+|||+|||+||++||||+|+. ++|+++|++|++||++|+||.+|+.||+||+++...+. ++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~-~~- 79 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF-GG- 79 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc-CC-
Confidence 4699999999999999999999999999999999974 78999999999999999999999999999987664221 10
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGG 362 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg 362 (644)
.++.+| .+++|+|+.|||+++ . ... |
T Consensus 80 --~~~~~f---------~~~~d~f~~~fgg~~-~--------------~~~---------------~------------- 105 (371)
T PRK14287 80 --GGAGDF---------GGFSDIFDMFFGGGG-G--------------RRN---------------P------------- 105 (371)
T ss_pred --CCCccc---------cchHHHHHhhhcccc-C--------------CCC---------------C-------------
Confidence 011111 135689999998421 0 000 0
Q ss_pred ccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEee--e--
Q psy11884 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT--T-- 438 (644)
Q Consensus 363 ~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~--~-- 438 (644)
....+|.|+++.|.|||||+|+|++++|.+++.+.|+.|+|+|...+....+|+.|+|+|++.+. +
T Consensus 106 ----------~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~ 175 (371)
T PRK14287 106 ----------NAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPF 175 (371)
T ss_pred ----------CCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCC
Confidence 00124789999999999999999999999999999999999999988888999999999976543 3
Q ss_pred cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCC
Q psy11884 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSS 509 (644)
Q Consensus 439 G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~ 509 (644)
|+++++++|+.|.|+|++++++|..|.|.|.+.+.++++|.||||+++|++|+|+++| |||+|+|+++||+
T Consensus 176 G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~ 255 (371)
T PRK14287 176 GRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHE 255 (371)
T ss_pred ceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCC
Confidence 4456678999999999999999999999999999999999999999999999999742 6999999999999
Q ss_pred CccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCC
Q psy11884 510 RYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYP 589 (644)
Q Consensus 510 ~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~L 589 (644)
.|+|+|+||++++.|+|.+|++|+++.|+|+||+ +.|+||+|+++|++++|+|+|||..+...+|||||+|+|.+|+.|
T Consensus 256 ~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l 334 (371)
T PRK14287 256 FFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNL 334 (371)
T ss_pred CEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCC
Confidence 9999999999999999999999999999999998 699999999999999999999998665568999999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHHH
Q psy11884 590 SEKQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFIK 636 (644)
Q Consensus 590 s~~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (644)
+++|+++|++|+..+... .+ .+...||+++++|++
T Consensus 335 ~~~q~~ll~~l~~~~~~~------~~------~~~~~~~~~~~~~~~ 369 (371)
T PRK14287 335 TEKEKELMREFAGMSGGR------PD------EQNDGFFAKVKRAFK 369 (371)
T ss_pred CHHHHHHHHHHHhhhccc------cC------cccccHHHHHHHHhc
Confidence 999999999999653211 01 111378888887765
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.8e-72 Score=605.08 Aligned_cols=359 Identities=35% Similarity=0.636 Sum_probs=302.4
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
.+|||++|||+++|+.+|||+|||+||++||||+|+. +.|+++|++|++||++|+||.+|+.||+||++++..+..+ +
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~-~ 80 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGG-G 80 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCC-C
Confidence 4699999999999999999999999999999999975 7799999999999999999999999999998766432111 0
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGG 362 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg 362 (644)
+.++.+|. +..+++|+|+.|||+++.. ...
T Consensus 81 -~~~~~~~~------~~~~~~d~f~~~fgg~~~~--------------~~~----------------------------- 110 (376)
T PRK14280 81 -GFGGGDFG------GGFGFEDIFSSFFGGGGRR--------------RDP----------------------------- 110 (376)
T ss_pred -CCCCCCcc------ccccchhhHHHHhCCcccc--------------Ccc-----------------------------
Confidence 00001111 1124678999999742100 000
Q ss_pred ccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEee--e--
Q psy11884 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT--T-- 438 (644)
Q Consensus 363 ~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~--~-- 438 (644)
....+|.|+++.|.|||||+|+|++++|++++.+.|+.|+|+|...+....+|+.|+|+|++... +
T Consensus 111 ----------~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~ 180 (376)
T PRK14280 111 ----------NAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPF 180 (376)
T ss_pred ----------cccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCC
Confidence 00125789999999999999999999999999999999999999988888999999999976432 2
Q ss_pred cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCC
Q psy11884 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSS 509 (644)
Q Consensus 439 G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~ 509 (644)
|+++++++|+.|+|+|++++++|+.|+|.|++.+.++++|.||||+++|++|+|++.| |||+|+|+++||+
T Consensus 181 g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~ 260 (376)
T PRK14280 181 GRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHE 260 (376)
T ss_pred ceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCC
Confidence 4456778999999999999999999999999999999999999999999999999742 6999999999999
Q ss_pred CccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCC
Q psy11884 510 RYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYP 589 (644)
Q Consensus 510 ~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~L 589 (644)
.|+|+|+||+++++|+|.+||+|+++.|+||||+ +.|+||+++++|++++|+|+|||..++..+|||||+|+|.+|+.|
T Consensus 261 ~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~L 339 (376)
T PRK14280 261 FFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKL 339 (376)
T ss_pred CeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCC
Confidence 9999999999999999999999999999999997 699999999999999999999998655578999999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHHH
Q psy11884 590 SEKQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFIK 636 (644)
Q Consensus 590 s~~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (644)
|++|+++|++|++.+... +++ +-..||+++++|++
T Consensus 340 s~~q~~~l~~l~~~~~~~------~~~------~~~~~~~~~~~~~~ 374 (376)
T PRK14280 340 TDRQKELLREFAELSGEE------IDE------QPSSFFDKAKRAFK 374 (376)
T ss_pred CHHHHHHHHHHHhhcccc------cCc------ccccHHHHHHHHhc
Confidence 999999999999643211 110 11378888887765
No 12
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.9e-72 Score=605.20 Aligned_cols=361 Identities=32% Similarity=0.560 Sum_probs=301.5
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASR 283 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~ 283 (644)
+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||.+|+.||+||++....+ +.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~--~~-- 77 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG--GG-- 77 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCcccccc--CC--
Confidence 69999999999999999999999999999999998 47899999999999999999999999999997532111 00
Q ss_pred CCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCCc
Q psy11884 284 STTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGI 363 (644)
Q Consensus 284 ~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg~ 363 (644)
+ .+|.. .| .+++|+|++|||+++.. .+. +
T Consensus 78 ~---~g~~~--~f---~~~~d~f~~ffgg~g~~--------------~~~---------------~-------------- 106 (378)
T PRK14278 78 G---GGFGG--GF---GGLGDVFEAFFGGGAAS--------------RGP---------------R-------------- 106 (378)
T ss_pred C---CCCCc--Cc---CchhHHHHHHhCCCCCC--------------CCC---------------c--------------
Confidence 0 01110 11 24678999999842100 000 0
Q ss_pred cchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEee----ec
Q psy11884 364 SITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT----TG 439 (644)
Q Consensus 364 ~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~----~G 439 (644)
....++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+....+|+.|+|+|++... .|
T Consensus 107 ---------~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g 177 (378)
T PRK14278 107 ---------GRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLG 177 (378)
T ss_pred ---------cCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccce
Confidence 00124789999999999999999999999999999999999999999889999999999976433 24
Q ss_pred CceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCC
Q psy11884 440 PFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSR 510 (644)
Q Consensus 440 ~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~ 510 (644)
.++++++|+.|+|+|++++++|+.|+|.|++.+.++++|.||||+++|++|+|++.| |||+|+|+++||+.
T Consensus 178 ~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~ 257 (378)
T PRK14278 178 QVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDV 257 (378)
T ss_pred eEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCC
Confidence 556678999999999999999999999999999999999999999999999999742 69999999999999
Q ss_pred ccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCC
Q psy11884 511 YHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPS 590 (644)
Q Consensus 511 F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls 590 (644)
|+|+|+||+++++|+|.+|++|+++.|+|||+..+.|+||+++++|++++|+|+|||..+...+|||||+|+|.||+.||
T Consensus 258 F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls 337 (378)
T PRK14278 258 FVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLD 337 (378)
T ss_pred EEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCC
Confidence 99999999999999999999999999999977788999999999999999999999986555689999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHHH
Q psy11884 591 EKQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFIK 636 (644)
Q Consensus 591 ~~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (644)
++|+++|++|+..+.....+ .+...+-..|++++++|+.
T Consensus 338 ~~qk~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 376 (378)
T PRK14278 338 HEDIELLRELKALRGREVAE-------VRSTHAQGGLFSRLRETFT 376 (378)
T ss_pred HHHHHHHHHHHhhcCccccc-------cccCcccccHHHHHHHHhc
Confidence 99999999999643111101 0011111478888887764
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.8e-72 Score=602.15 Aligned_cols=347 Identities=30% Similarity=0.542 Sum_probs=300.3
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASR 283 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~ 283 (644)
+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||+.+...++ +.+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~-~~~- 80 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGG-GFE- 80 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCC-Ccc-
Confidence 699999999999999999999999999999999987788999999999999999999999999999987654221 100
Q ss_pred CCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCCc
Q psy11884 284 STTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGI 363 (644)
Q Consensus 284 ~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg~ 363 (644)
+. ..+|. .+. ....+++|+|+.|||++. + +...
T Consensus 81 ~~-~~g~~-~~~-~~~~~~~d~f~~~fgg~~-~-------------~~~~------------------------------ 113 (365)
T PRK14285 81 GF-SGGFS-GFS-DIFEDFGDIFDSFFTGNR-G-------------QDKN------------------------------ 113 (365)
T ss_pred cc-CCCcc-ccc-cccccHHHHHHHhhcCCc-C-------------CCCC------------------------------
Confidence 00 00111 000 001357789999997420 0 0000
Q ss_pred cchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCcee
Q psy11884 364 SITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIM 443 (644)
Q Consensus 364 ~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~ 443 (644)
....+|.|+++.|.|||||+|+|+++++++++.+.|+.|+|+|...+....+|+.|+|+|+++...|++++
T Consensus 114 ---------~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~ 184 (365)
T PRK14285 114 ---------RKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRV 184 (365)
T ss_pred ---------cCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEE
Confidence 00125789999999999999999999999999999999999999998889999999999988777777778
Q ss_pred eeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCCcccc
Q psy11884 444 KTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSRYHRD 514 (644)
Q Consensus 444 ~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~F~R~ 514 (644)
+++|+.|+|+|++++++|+.|+|.|++.+.++++|.||||+++|++|+|++.| |||+|+|++++|+.|+|+
T Consensus 185 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~ 264 (365)
T PRK14285 185 TTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRN 264 (365)
T ss_pred eeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEe
Confidence 89999999999999999999999999999999999999999999999999642 799999999999999999
Q ss_pred CCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHHH
Q psy11884 515 QSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQK 594 (644)
Q Consensus 515 G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q~ 594 (644)
|+||+++++|+|.+||+|+++.|+||||+.|.|+||+|+++|++++|+|+|||..+...+|||||+|+|.+|+.|+++|+
T Consensus 265 G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~ 344 (365)
T PRK14285 265 GKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAI 344 (365)
T ss_pred ccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHH
Confidence 99999999999999999999999999999899999999999999999999999866556899999999999999999999
Q ss_pred HHHHHHhhhCCCCC
Q psy11884 595 DLVREFFSVEPNTN 608 (644)
Q Consensus 595 ~lL~~l~~~~~~~~ 608 (644)
++|++|+......+
T Consensus 345 ~~l~~l~~~~~~~~ 358 (365)
T PRK14285 345 KLLENLSKELKDID 358 (365)
T ss_pred HHHHHHHHHhcccc
Confidence 99999997654433
No 14
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.2e-72 Score=605.84 Aligned_cols=361 Identities=31% Similarity=0.532 Sum_probs=291.2
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
.+|||+||||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||++|+||+||+.||+||+++...+..+..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~ 87 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR 87 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence 47999999999999999999999999999999999877889999999999999999999999999999753321110000
Q ss_pred --CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhccccccc
Q psy11884 283 --RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCI 360 (644)
Q Consensus 283 --~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~ 360 (644)
++.+..+|... .+....|++++|...++.++..|. .+++. -|++.
T Consensus 88 ~~~~~~~~g~~~~-~~~~~~d~~~~f~~~~~~~~~~f~----d~f~~--~fg~~-------------------------- 134 (392)
T PRK14279 88 FDGGGGFGGFGTG-GDGAEFNLNDLFDAAGRGGGGGIG----DLFGG--LFNRG-------------------------- 134 (392)
T ss_pred ccCCCCCCCcccc-ccccCcChhhhhcccccccccchh----hhhhh--hhcCC--------------------------
Confidence 00000111000 000112333333222111100000 00000 00000
Q ss_pred CCccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecC
Q psy11884 361 GGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGP 440 (644)
Q Consensus 361 gg~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~ 440 (644)
++.. ......++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|+..+....+|+.|+|+|+++...|+
T Consensus 135 ~~~~------~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~ 208 (392)
T PRK14279 135 GGSA------RPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGA 208 (392)
T ss_pred Cccc------ccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecc
Confidence 0000 0001135789999999999999999999999999999999999999998889999999999998888888
Q ss_pred ceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCCc
Q psy11884 441 FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSRY 511 (644)
Q Consensus 441 ~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~F 511 (644)
+.++++|+.|+|+|++++.+|..|+|.|++.+.++++|.||||+.+|++|+|++.| |||+|+|+++||+.|
T Consensus 209 ~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F 288 (392)
T PRK14279 209 FGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVF 288 (392)
T ss_pred eEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcc
Confidence 88899999999999999999999999999999999999999999999999999742 699999999999999
Q ss_pred cccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCH
Q psy11884 512 HRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSE 591 (644)
Q Consensus 512 ~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~ 591 (644)
+|+|+||+++++|+|.+|++|+++.|+|+||+ +.|+||+|+++|++++|+|+|||.. ...+|||||+|+|.||+.|++
T Consensus 289 ~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~-i~v~Ip~g~~~g~~iri~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~ 366 (392)
T PRK14279 289 GRDGDDLTVTVPVSFTELALGSTLSVPTLDGP-VGVKVPAGTADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVPPNLDG 366 (392)
T ss_pred eeecCcEEEEEEccHHHHcCCceEEEEcCCce-EEEEECCCCCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCH
Confidence 99999999999999999999999999999998 6999999999999999999999974 346899999999999999999
Q ss_pred HHHHHHHHHhhhC
Q psy11884 592 KQKDLVREFFSVE 604 (644)
Q Consensus 592 ~q~~lL~~l~~~~ 604 (644)
+|+++|++|+..+
T Consensus 367 ~q~~~l~~~~~~~ 379 (392)
T PRK14279 367 AAAEALEAYAEAE 379 (392)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999753
No 15
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-71 Score=600.56 Aligned_cols=340 Identities=32% Similarity=0.564 Sum_probs=296.1
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
.+|||++|||+++||.+|||+|||+||++||||+++++++|+++|++|++||++|+||.+|+.||+||+++++.++ .+
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~--~~ 80 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG--GF 80 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC--CC
Confidence 4699999999999999999999999999999999987788999999999999999999999999999987654210 00
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGG 362 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg 362 (644)
.+|..... ...+++|+|+.|||.++.. . ...
T Consensus 81 -----~g~~~~~~--~~~~f~d~f~~~fg~g~~~-----------~-~~~------------------------------ 111 (373)
T PRK14301 81 -----GGFSSAED--IFSHFSDIFGDLFGFSGGG-----------S-RRG------------------------------ 111 (373)
T ss_pred -----CCcccccc--cccchHHHHHHHhhccCcc-----------c-ccC------------------------------
Confidence 01110000 0013457788877621100 0 000
Q ss_pred ccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCce
Q psy11884 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFI 442 (644)
Q Consensus 363 ~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~ 442 (644)
....+|.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+....+|+.|+|+|++...+|+++
T Consensus 112 ----------~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~ 181 (373)
T PRK14301 112 ----------PRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQ 181 (373)
T ss_pred ----------CCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEE
Confidence 0012578999999999999999999999999999999999999998888899999999999887888888
Q ss_pred eeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCCccc
Q psy11884 443 MKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSRYHR 513 (644)
Q Consensus 443 ~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~F~R 513 (644)
++++|+.|+|+|++++++|+.|+|.|++.+.++++|.||||+++|++|+|++.| |||+|+|.+++|+.|+|
T Consensus 182 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r 261 (373)
T PRK14301 182 IAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQR 261 (373)
T ss_pred EEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCcee
Confidence 889999999999999999999999999999999999999999999999999742 69999999999999999
Q ss_pred cCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 514 DQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 514 ~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
+|+||+++++|+|.+||+|+++.|+|+||+ +.|+||+|+++|++++|+|+|||..+...+|||||+|+|.+|+.|+++|
T Consensus 262 ~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q 340 (373)
T PRK14301 262 QGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQ 340 (373)
T ss_pred ecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence 999999999999999999999999999998 7999999999999999999999987655689999999999999999999
Q ss_pred HHHHHHHhhhC
Q psy11884 594 KDLVREFFSVE 604 (644)
Q Consensus 594 ~~lL~~l~~~~ 604 (644)
+++|++|+..+
T Consensus 341 ~~~l~~l~~~~ 351 (373)
T PRK14301 341 EELLREFEALE 351 (373)
T ss_pred HHHHHHHHhhc
Confidence 99999999754
No 16
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1.2e-71 Score=607.49 Aligned_cols=323 Identities=29% Similarity=0.531 Sum_probs=285.1
Q ss_pred CCccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccC
Q psy11884 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAG 280 (644)
Q Consensus 201 ~~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g 280 (644)
+..+|||+||||+++||.+|||+|||+||++||||+|++ .++|++|++||++|+||.+|+.||.||.++...+
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~--- 97 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGG--- 97 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccC---
Confidence 346799999999999999999999999999999999853 4899999999999999999999999998655311
Q ss_pred CCCCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhccccccc
Q psy11884 281 ASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCI 360 (644)
Q Consensus 281 ~~~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~ 360 (644)
. . ..|+.|+|+.|||+++.. .
T Consensus 98 -~--~-------------~~d~~d~f~~~Fggg~~~---------------~---------------------------- 118 (421)
T PTZ00037 98 -E--Q-------------PADASDLFDLIFGGGRKP---------------G---------------------------- 118 (421)
T ss_pred -C--C-------------CcchhhhHHHhhcccccc---------------c----------------------------
Confidence 0 0 125678999999742100 0
Q ss_pred CCccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEE--eee
Q psy11884 361 GGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYET--TTT 438 (644)
Q Consensus 361 gg~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~--~~~ 438 (644)
...+|.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+ ...+|+.|+|+|+++ .++
T Consensus 119 -------------~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~ 184 (421)
T PTZ00037 119 -------------GKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKD-AFVDCKLCNGQGIRVQIRQM 184 (421)
T ss_pred -------------cccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCC-CCccCCCCCCCCeEEEEEee
Confidence 0024789999999999999999999999999999999999998655 578999999999754 345
Q ss_pred cCce--eeeecCCCCceeEEEe--eccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC--------ceEEEEEEee
Q psy11884 439 GPFI--MKTTCRYCSGSGIYIK--FPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ--------DQIFVTFQVI 506 (644)
Q Consensus 439 G~~~--~~~~C~~C~G~G~~i~--~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g--------gDL~v~i~vk 506 (644)
|++. ++++|+.|+|+|+++. ++|+.|+|.|++.+.++++|.||||+.+|++|+|+|+| |||+|+|.++
T Consensus 185 g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ 264 (421)
T PTZ00037 185 GSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEK 264 (421)
T ss_pred cceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEec
Confidence 7753 5679999999999986 89999999999999999999999999999999999854 6999999999
Q ss_pred cCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCC--CCCCcEEEEcCCCcCCCCC-CCCccEEEEEEE
Q psy11884 507 PSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPG--TSSHTKIKIPYKGLKNRNS-SGYGHHFVHVKI 583 (644)
Q Consensus 507 ph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG--~~~g~~irI~GeG~P~~~~-~~rGDL~V~f~V 583 (644)
||+.|+|+|+||+++++|+|.+||+|+++.|+||||+.|.|+|||| +++|++++|+|+|||..+. ..+|||||+|+|
T Consensus 265 ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V 344 (421)
T PTZ00037 265 PHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEV 344 (421)
T ss_pred CCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEE
Confidence 9999999999999999999999999999999999999889999998 8999999999999997543 468999999999
Q ss_pred ECC--CCCCHHHHHHHHHHhhh
Q psy11884 584 EVP--RYPSEKQKDLVREFFSV 603 (644)
Q Consensus 584 ~fP--~~Ls~~q~~lL~~l~~~ 603 (644)
.|| +.||++|+++|++|+..
T Consensus 345 ~~P~~~~Ls~~qk~ll~~l~~~ 366 (421)
T PTZ00037 345 IFPVDRKFTNEEKEILKSLFPQ 366 (421)
T ss_pred EcCCCCCCCHHHHHHHHHhccC
Confidence 999 99999999999999964
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.4e-71 Score=597.83 Aligned_cols=351 Identities=30% Similarity=0.557 Sum_probs=290.9
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccc----cCCccccccc
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDT----WGATSEQMSA 278 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~----~G~~~~~~~~ 278 (644)
.+|||+||||+++||.+|||+|||+||++||||+|+.+++|+++|++|++||++|+||.+|+.||+ ||++++..+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~ 87 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP 87 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence 469999999999999999999999999999999998777899999999999999999999999999 9987654210
Q ss_pred cCCCCCCCccccccccCCCCCCChHHHHHhhhCCCCCC-cchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccc
Q psy11884 279 AGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFD-FKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRT 357 (644)
Q Consensus 279 ~g~~~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~-~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~ 357 (644)
+.+ +. .+| . .|++++|..+++.++++ +...-..+++ ..|++
T Consensus 88 -~~~-~~--~~~----~----~~~~~~f~~~~~~~~~~~~~~~f~d~f~--~~fg~------------------------ 129 (389)
T PRK14295 88 -GGG-GG--GGF----N----FDLGDLFGGGAQGGGGAGGGGGLGDVFG--GLFNR------------------------ 129 (389)
T ss_pred -CCC-CC--CCC----C----cccccccccccccccccccccchhhhhc--ccccC------------------------
Confidence 000 00 011 0 13334443322111100 0000000000 00000
Q ss_pred cccCCccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEee
Q psy11884 358 TCIGGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT 437 (644)
Q Consensus 358 ~~~gg~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~ 437 (644)
+ . ......++.|+++.|.|||||+|+|++++|.+++.+.|+.|+|+|...+....+|+.|+|+|+++..
T Consensus 130 ----~-~------~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 198 (389)
T PRK14295 130 ----G-G------RRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRN 198 (389)
T ss_pred ----C-C------CCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEE
Confidence 0 0 0001135789999999999999999999999999999999999999999888999999999988777
Q ss_pred ecCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecC
Q psy11884 438 TGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPS 508 (644)
Q Consensus 438 ~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph 508 (644)
.|+++++++|+.|+|+|++++++|..|.|.|++.+.++++|.||||+++|++|+|++.| |||+|+|.++||
T Consensus 199 ~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h 278 (389)
T PRK14295 199 SGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPH 278 (389)
T ss_pred ecceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecC
Confidence 78888889999999999999999999999999999999999999999999999999742 699999999999
Q ss_pred CCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCC
Q psy11884 509 SRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRY 588 (644)
Q Consensus 509 ~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~ 588 (644)
+.|+|+|+||+++++|+|.+|++|++++|+|+||+.|.|+||+|+++|++++|+|+|||.. ...+|||||+|+|.||+.
T Consensus 279 ~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri~G~G~p~~-~~~~GDL~i~~~v~~P~~ 357 (389)
T PRK14295 279 PVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVRK-DGTRGDLLVTVEVAVPKD 357 (389)
T ss_pred CCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEECCCCcCCC-CCCCCCEEEEEEEECCCC
Confidence 9999999999999999999999999999999999888999999999999999999999974 346899999999999999
Q ss_pred CCHHHHHHHHHHhhh
Q psy11884 589 PSEKQKDLVREFFSV 603 (644)
Q Consensus 589 Ls~~q~~lL~~l~~~ 603 (644)
|+++|+++|++|+..
T Consensus 358 Ls~~qk~~l~~l~~~ 372 (389)
T PRK14295 358 LSGKAREALEAFREA 372 (389)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999999864
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9e-71 Score=593.40 Aligned_cols=341 Identities=35% Similarity=0.620 Sum_probs=297.1
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCC
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGA 281 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~ 281 (644)
..+|||++|||+++||.+|||+|||+||++||||+++++++|+++|++|++||++|+||.+|+.||+||++++..+..
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~-- 79 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGF-- 79 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCC--
Confidence 357999999999999999999999999999999999877889999999999999999999999999999876642110
Q ss_pred CCCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccC
Q psy11884 282 SRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIG 361 (644)
Q Consensus 282 ~~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~g 361 (644)
+ +..+|... | .++.|+|++|||.++.. . +...
T Consensus 80 ~---~~~~~~~~--~---~~~~d~f~~~fg~g~~~-----------~-~~~~---------------------------- 111 (366)
T PRK14294 80 S---GFSGFDDI--F---SSFGDIFEDFFGFGGGR-----------R-GRSR---------------------------- 111 (366)
T ss_pred C---CcCccccc--h---hhhhhhHHHhhccCCCc-----------C-Cccc----------------------------
Confidence 0 00111100 1 24568899998721100 0 0000
Q ss_pred CccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCc
Q psy11884 362 GISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPF 441 (644)
Q Consensus 362 g~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~ 441 (644)
....++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+....+|+.|+|+|+++...|++
T Consensus 112 -----------~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~ 180 (366)
T PRK14294 112 -----------TAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFF 180 (366)
T ss_pred -----------CCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeE
Confidence 001257899999999999999999999999999999999999999888889999999999988788888
Q ss_pred eeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCCcc
Q psy11884 442 IMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSRYH 512 (644)
Q Consensus 442 ~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~F~ 512 (644)
+++++|+.|+|+|+.+..+|+.|+|.|++.+.++++|.||||+++|++|+|++.| |||+|+|.++||+.|+
T Consensus 181 ~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~ 260 (366)
T PRK14294 181 SIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFE 260 (366)
T ss_pred EEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcce
Confidence 8889999999999999999999999999999999999999999999999999743 6999999999999999
Q ss_pred ccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHH
Q psy11884 513 RDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEK 592 (644)
Q Consensus 513 R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~ 592 (644)
|+|+||++++.|+|.+||+|+++.|+||||+ +.|+||+|+++|++++|+|+|||..+...+|||||+|+|.+|+.|+++
T Consensus 261 R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~ 339 (366)
T PRK14294 261 RDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKK 339 (366)
T ss_pred ecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHH
Confidence 9999999999999999999999999999997 499999999999999999999998665568999999999999999999
Q ss_pred HHHHHHHHhhhC
Q psy11884 593 QKDLVREFFSVE 604 (644)
Q Consensus 593 q~~lL~~l~~~~ 604 (644)
|+++|++|+..+
T Consensus 340 q~~ll~~~~~~~ 351 (366)
T PRK14294 340 QEELLTEFARLE 351 (366)
T ss_pred HHHHHHHHHHhc
Confidence 999999999753
No 19
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-70 Score=592.86 Aligned_cols=346 Identities=32% Similarity=0.585 Sum_probs=292.3
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTD-PNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGA 281 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~-~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~ 281 (644)
.+|||++|||+++||.+|||+|||+||++||||+|+.+ ++|+++|++|++||++|+||.+|+.||+||.++.+.+..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 47999999999999999999999999999999999764 67899999999999999999999999999987654221110
Q ss_pred CCCCCcccc-cccc-CCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccc
Q psy11884 282 SRSTTAEDY-MHRW-NFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTC 359 (644)
Q Consensus 282 ~~~~~~~~f-~~~~-~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~ 359 (644)
+ +. .+| ...+ .|. .....|+|+.|||+++.. ... +
T Consensus 83 ~-~~--g~~~~~~~~~~~-~~~~~d~f~~~fgg~~~~-------------~~~----------------~---------- 119 (369)
T PRK14282 83 E-SG--GGFFEDIFKDFE-NIFNRDIFDIFFGERRTQ-------------EEQ----------------R---------- 119 (369)
T ss_pred C-CC--Cccccccccccc-ccccchhhhHhhcccCCc-------------ccc----------------c----------
Confidence 0 00 011 1000 010 001136788888741100 000 0
Q ss_pred cCCccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEe--e
Q psy11884 360 IGGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETT--T 437 (644)
Q Consensus 360 ~gg~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~--~ 437 (644)
....+|.|+++.|.|||||+|+|+++++++++.+.|+.|+|+|+..+....+|+.|+|+|++.. +
T Consensus 120 -------------~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~ 186 (369)
T PRK14282 120 -------------EYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERR 186 (369)
T ss_pred -------------CCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEE
Confidence 0012578999999999999999999999999999999999999998888899999999997643 2
Q ss_pred e--cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEee
Q psy11884 438 T--GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVI 506 (644)
Q Consensus 438 ~--G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vk 506 (644)
+ |+++++++|+.|+|+|++++++|+.|+|.|++.+.++++|.||||+.+|++|+|+|+| |||+|+|+++
T Consensus 187 ~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~ 266 (369)
T PRK14282 187 SFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVR 266 (369)
T ss_pred ccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEe
Confidence 3 5566788999999999999999999999999999999999999999999999999742 6999999999
Q ss_pred cCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECC
Q psy11884 507 PSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVP 586 (644)
Q Consensus 507 ph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP 586 (644)
||+.|+|+|+||+++++|+|.+|++|+++.|+|+||+.|+|+||+|+++|++++|+|+|||..+...+|||||+|+|.+|
T Consensus 267 ~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P 346 (369)
T PRK14282 267 PDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIP 346 (369)
T ss_pred cCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECC
Confidence 99999999999999999999999999999999999998899999999999999999999997544568999999999999
Q ss_pred CCCCHHHHHHHHHHhhhC
Q psy11884 587 RYPSEKQKDLVREFFSVE 604 (644)
Q Consensus 587 ~~Ls~~q~~lL~~l~~~~ 604 (644)
+.|+++++++|++|+..+
T Consensus 347 ~~l~~~~~~ll~~l~~~~ 364 (369)
T PRK14282 347 KRLSREERKLLKELAKKR 364 (369)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999999653
No 20
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-70 Score=592.38 Aligned_cols=336 Identities=35% Similarity=0.620 Sum_probs=293.1
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
..|||++|||+++||.+|||+|||+||++||||+|++++.|+++|++|++||++|+|+.+|+.||+||+++...+.. +
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~--~ 80 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGG--G 80 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCC--C
Confidence 46999999999999999999999999999999999877889999999999999999999999999999876542210 0
Q ss_pred CCCCccccccccCCCCCCC-hHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccC
Q psy11884 283 RSTTAEDYMHRWNFKSSVD-PEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIG 361 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d-~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~g 361 (644)
.+..++ . .| .| ++++|+.|||+++ + ...
T Consensus 81 --~~~~~~-~--~~---~~~f~~~f~~~fgg~~-~--------------~~~---------------------------- 109 (371)
T PRK10767 81 --GGFGGG-G--GF---GDIFGDIFGDIFGGGR-G--------------GGR---------------------------- 109 (371)
T ss_pred --CCCCCc-c--cc---ccchhhhhhhhccCCc-c--------------ccC----------------------------
Confidence 000000 0 01 12 4466766665310 0 000
Q ss_pred CccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCc
Q psy11884 362 GISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPF 441 (644)
Q Consensus 362 g~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~ 441 (644)
....++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+.....|+.|+|+|+++...|++
T Consensus 110 -----------~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~ 178 (371)
T PRK10767 110 -----------QRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFF 178 (371)
T ss_pred -----------CCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceE
Confidence 001257899999999999999999999999999999999999999888889999999999887777888
Q ss_pred eeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCCcc
Q psy11884 442 IMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSRYH 512 (644)
Q Consensus 442 ~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~F~ 512 (644)
+++++|+.|+|+|++++++|+.|+|.|++.+.+.++|.||||+.+|++|+|++.| |||+|+|+++||+.|+
T Consensus 179 ~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~ 258 (371)
T PRK10767 179 TVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFE 258 (371)
T ss_pred EEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEE
Confidence 8888999999999999999999999999999999999999999999999999742 6999999999999999
Q ss_pred ccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHH
Q psy11884 513 RDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEK 592 (644)
Q Consensus 513 R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~ 592 (644)
|+|+||++++.|++.+||+|+++.|+||||. +.|+||+|+++|++++|+|+|||..++..+|||||+|+|.+|+.|+++
T Consensus 259 R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~-i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~ 337 (371)
T PRK10767 259 RDGNDLYCEVPISFTTAALGGEIEVPTLDGR-VKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKR 337 (371)
T ss_pred EecCCEEEEEEeCHHHHhCCCeEEEecCCCc-EEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHH
Confidence 9999999999999999999999999999994 799999999999999999999998665578999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy11884 593 QKDLVREFFSV 603 (644)
Q Consensus 593 q~~lL~~l~~~ 603 (644)
|+++|+++++.
T Consensus 338 ~~~ll~~l~~~ 348 (371)
T PRK10767 338 QKELLEEFEES 348 (371)
T ss_pred HHHHHHHHHhh
Confidence 99999999964
No 21
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-70 Score=595.63 Aligned_cols=378 Identities=31% Similarity=0.543 Sum_probs=300.8
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASR 283 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~ 283 (644)
.|||++|||+++|+.+|||+|||+||++||||+++++++|+++|++|++||++|+|+.+|+.||+||++++...... .+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~-~~ 81 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAAS-GG 81 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhcccccc-CC
Confidence 69999999999999999999999999999999998778899999999999999999999999999998766421100 00
Q ss_pred CCCccccccccCCCCCCChHHHH---HhhhCCCC-CCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccc
Q psy11884 284 STTAEDYMHRWNFKSSVDPEELF---RKIFGDTG-FDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTC 359 (644)
Q Consensus 284 ~~~~~~f~~~~~~~~~~d~~dlF---~~fFG~~~-f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~ 359 (644)
+ .+|.. +..+++|+| ++|||+++ +.. ++..+|.. .
T Consensus 82 ~---~~~~~-----~~~~~~d~f~~f~~~Fgg~~~~~~--------~~~~~~~~-------------------------~ 120 (397)
T PRK14281 82 G---PGYGG-----GGGDFNDIFSAFNDMFGGGARRGG--------GSPFGFED-------------------------V 120 (397)
T ss_pred C---CCCCc-----CCCCHHHHHHHHHHHhCCCccccc--------cccccccc-------------------------c
Confidence 0 01110 012345555 57887521 110 00000100 0
Q ss_pred cCCccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEee--
Q psy11884 360 IGGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT-- 437 (644)
Q Consensus 360 ~gg~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~-- 437 (644)
.++. .. ........++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+ ...+|+.|+|+|+++..
T Consensus 121 ~~g~--~~-~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~ 196 (397)
T PRK14281 121 FGGG--GR-RRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASK 196 (397)
T ss_pred cCCC--cc-cccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEe
Confidence 0000 00 000000125789999999999999999999999999999999999999887 57899999999976542
Q ss_pred --ecCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecC---------CceEEEEEEee
Q psy11884 438 --TGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIG---------QDQIFVTFQVI 506 (644)
Q Consensus 438 --~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~---------ggDL~v~i~vk 506 (644)
.|.++++++|+.|+|+|++++++|+.|+|.|++.+.++++|.||||+++|++|+|++. .|||+|+|+++
T Consensus 197 ~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~ 276 (397)
T PRK14281 197 TMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEK 276 (397)
T ss_pred cccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEc
Confidence 2555677899999999999999999999999999999999999999999999999964 26999999999
Q ss_pred cCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECC
Q psy11884 507 PSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVP 586 (644)
Q Consensus 507 ph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP 586 (644)
||+.|+|+|+||+++++|+|.+||+|+++.|+||||+ +.|+||+|+++|++++|+|+|||..+...+|||||+|+|.||
T Consensus 277 ~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P 355 (397)
T PRK14281 277 PHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVP 355 (397)
T ss_pred CCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcC
Confidence 9999999999999999999999999999999999997 699999999999999999999998665578999999999999
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHHH
Q psy11884 587 RYPSEKQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFIK 636 (644)
Q Consensus 587 ~~Ls~~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (644)
+.||++|+++|++|+..+...+.. . . +.+-..||+++|+|++
T Consensus 356 ~~Ls~~qk~~l~~l~~~~~~~~~~-~-~------~~~~~~~~~~~~~~~~ 397 (397)
T PRK14281 356 KEVSHQDKELLKELKKSSHISPNA-H-N------DKEEKSFFEKAKDIFS 397 (397)
T ss_pred CCCCHHHHHHHHHHHhhccccccc-c-c------CcccccHHHHHHHhhC
Confidence 999999999999999643211110 0 0 1111378898888753
No 22
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-69 Score=586.47 Aligned_cols=359 Identities=34% Similarity=0.614 Sum_probs=299.2
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASR 283 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~ 283 (644)
+|||++|||+++|+.+|||+|||+||++||||+|+. +.|+++|++|++||++|+||.+|+.||+||.++...+..+.+
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~- 80 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ- 80 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc-
Confidence 699999999999999999999999999999999985 788999999999999999999999999999876542211100
Q ss_pred CCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCCc
Q psy11884 284 STTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGI 363 (644)
Q Consensus 284 ~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg~ 363 (644)
+..+|.. + ...+++|+|++||+..+|+ ..|++.. . +.. .+
T Consensus 81 --~~~~~~~---~-~~~~~~d~f~~~f~~fg~~------------~~fg~~~----------~--~~~---~~------- 120 (382)
T PRK14291 81 --GQEGFSD---F-GGGNIEDILEDVFDIFGFG------------DIFGRRR----------A--TRE---RR------- 120 (382)
T ss_pred --ccccccc---c-cCCCHHHHHHHHHHhcccc------------ccccccc----------c--ccc---cc-------
Confidence 0011210 1 1236778999886531111 0011000 0 000 00
Q ss_pred cchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCcee
Q psy11884 364 SITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIM 443 (644)
Q Consensus 364 ~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~ 443 (644)
.......++.|+++.|.|||||+|+|+++++++++.+.|+.|+|+|...+....+|+.|+|+|+++...|.+.+
T Consensus 121 ------~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~ 194 (382)
T PRK14291 121 ------KTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRI 194 (382)
T ss_pred ------cccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEE
Confidence 00001135789999999999999999999999999999999999999999889999999999988777677778
Q ss_pred eeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCCcccc
Q psy11884 444 KTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSRYHRD 514 (644)
Q Consensus 444 ~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~F~R~ 514 (644)
+++|+.|+|+|. ++++|+.|+|.|++.+.++++|.||||+.+|++|+|+|+| |||+|+|+++||+.|+|+
T Consensus 195 ~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~ 273 (382)
T PRK14291 195 SQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERR 273 (382)
T ss_pred EecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeee
Confidence 889999999994 7899999999999999999999999999999999999743 699999999999999999
Q ss_pred CCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCC--CCC--
Q psy11884 515 QSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPR--YPS-- 590 (644)
Q Consensus 515 G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~--~Ls-- 590 (644)
|+||++++.|+|.+|++|+++.|+|+||+.++|+||+|+++|++++|+|+|||..+...+|||||+|+|.||+ .|+
T Consensus 274 G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls~~ 353 (382)
T PRK14291 274 GDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLSKL 353 (382)
T ss_pred cCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcCcc
Confidence 9999999999999999999999999999988999999999999999999999987655789999999999998 599
Q ss_pred ----HHHHHHHHHHhhhCCCCCCCC
Q psy11884 591 ----EKQKDLVREFFSVEPNTNGNK 611 (644)
Q Consensus 591 ----~~q~~lL~~l~~~~~~~~~~~ 611 (644)
++|+++|++|.+..+..++.+
T Consensus 354 ~~~~~~~~~~~~~l~~~~~~~~~~~ 378 (382)
T PRK14291 354 MGDGKKAKKLLKELDKLLPEPERIV 378 (382)
T ss_pred ccCCHHHHHHHHHHHhhcCCccccc
Confidence 999999999997765444443
No 23
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-69 Score=582.97 Aligned_cols=341 Identities=33% Similarity=0.617 Sum_probs=293.7
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASR 283 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~ 283 (644)
.|||++|||+++||.+|||+|||+||++||||+++. +.++++|++|++||++|+|+.+|+.||+||+++++.+...++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~- 80 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGG- 80 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCC-
Confidence 699999999999999999999999999999999874 678999999999999999999999999999876642210000
Q ss_pred CCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCCc
Q psy11884 284 STTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGI 363 (644)
Q Consensus 284 ~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg~ 363 (644)
..+..+| . .+++++|++||++. |+ +++... |.
T Consensus 81 ~g~~~~~------~--~~~~~~f~~~f~~~-~g----------g~~~~~----------------~~------------- 112 (372)
T PRK14300 81 GGNHGGF------H--PDINDIFGDFFSDF-MG----------GSRRSR----------------PT------------- 112 (372)
T ss_pred CCCCCcc------c--cchhhhHHHHHHhh-cC----------CCCCCC----------------CC-------------
Confidence 0000111 1 13456777777631 11 000000 00
Q ss_pred cchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCcee
Q psy11884 364 SITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIM 443 (644)
Q Consensus 364 ~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~ 443 (644)
....++.|+++.|.|||||+|+|+++++.+.+.+.|+.|+|+|...+....+|+.|+|+|++....|++++
T Consensus 113 ---------~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~ 183 (372)
T PRK14300 113 ---------SSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTI 183 (372)
T ss_pred ---------cCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEE
Confidence 00024779999999999999999999999999999999999999998889999999999998877888888
Q ss_pred eeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCCcccc
Q psy11884 444 KTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSRYHRD 514 (644)
Q Consensus 444 ~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~F~R~ 514 (644)
+.+|+.|+|+|++++++|+.|+|.|++.+.++++|.||||+++|++|++++.| |||+|+|+++||+.|+|+
T Consensus 184 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~ 263 (372)
T PRK14300 184 EQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVD 263 (372)
T ss_pred EEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEe
Confidence 89999999999999999999999999999999999999999999999999742 699999999999999999
Q ss_pred CCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHHH
Q psy11884 515 QSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQK 594 (644)
Q Consensus 515 G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q~ 594 (644)
|+||++++.|++.+|++|+++.|+|+||+.|.|+||+|+++|++++|+|+|||..+...+|||||+|+|.||+.||++|+
T Consensus 264 G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk 343 (372)
T PRK14300 264 GANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQR 343 (372)
T ss_pred cCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
Confidence 99999999999999999999999999998899999999999999999999999865557899999999999999999999
Q ss_pred HHHHHHhhh
Q psy11884 595 DLVREFFSV 603 (644)
Q Consensus 595 ~lL~~l~~~ 603 (644)
++|++|++.
T Consensus 344 ~~l~~l~~~ 352 (372)
T PRK14300 344 ELLEEFKKE 352 (372)
T ss_pred HHHHHHHhh
Confidence 999999963
No 24
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.5e-68 Score=572.53 Aligned_cols=341 Identities=36% Similarity=0.652 Sum_probs=284.3
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCC
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGA 281 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~ 281 (644)
..+|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++|+|+.+|+.||+||+++++.. ..
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~-~~- 79 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGF-SQ- 79 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccc-cc-
Confidence 35799999999999999999999999999999999985 7899999999999999999999999999998765311 00
Q ss_pred CCCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccC
Q psy11884 282 SRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIG 361 (644)
Q Consensus 282 ~~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~g 361 (644)
. ..|. ..+++++|..|+++ |. .++. ..+|++
T Consensus 80 ---~--~~~~-------~~~~~~~~~~~~~~--~~------~~f~-~~~fgg---------------------------- 110 (378)
T PRK14283 80 ---E--DIFN-------NINFEDIFQGFGFG--IG------NIFD-MFGFGG---------------------------- 110 (378)
T ss_pred ---c--cccc-------ccCccccccccccc--hh------hhcc-ccccCC----------------------------
Confidence 0 0000 00112222222110 00 0000 000110
Q ss_pred CccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEee--e-
Q psy11884 362 GISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT--T- 438 (644)
Q Consensus 362 g~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~--~- 438 (644)
+ ......++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+.....|+.|+|+|++... +
T Consensus 111 ~--------~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~ 182 (378)
T PRK14283 111 G--------SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTI 182 (378)
T ss_pred C--------CCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEecc
Confidence 0 0000125789999999999999999999999999999999999999988889999999999986543 2
Q ss_pred -cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecC
Q psy11884 439 -GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPS 508 (644)
Q Consensus 439 -G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph 508 (644)
|++.++.+|+.|.|+|+.++++|..|+|+|.+.+.++++|.||||+++|++|+|++.| |||+|+|+|++|
T Consensus 183 ~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~ 262 (378)
T PRK14283 183 LGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPH 262 (378)
T ss_pred CceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcC
Confidence 5566778999999999999999999999999999999999999999999999999743 699999999999
Q ss_pred CCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCC
Q psy11884 509 SRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRY 588 (644)
Q Consensus 509 ~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~ 588 (644)
+.|+|+|+||+++++|+|.+|++|+++.|+|+|| .|.|.||+|+++|++++|+|+|||..+...+|||||+|+|.||+.
T Consensus 263 ~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~ 341 (378)
T PRK14283 263 KIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKK 341 (378)
T ss_pred CCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCC
Confidence 9999999999999999999999999999999999 579999999999999999999999765557899999999999999
Q ss_pred CCHHHHHHHHHHhhh
Q psy11884 589 PSEKQKDLVREFFSV 603 (644)
Q Consensus 589 Ls~~q~~lL~~l~~~ 603 (644)
|+++|+++|++|++.
T Consensus 342 l~~~q~~ll~~~~~~ 356 (378)
T PRK14283 342 LSPKQKELLREFASI 356 (378)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999999854
No 25
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-67 Score=569.17 Aligned_cols=357 Identities=31% Similarity=0.587 Sum_probs=301.3
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASR 283 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~ 283 (644)
.|||++|||+++||.+|||+|||+||++||||+++ +++|+++|++|++||++|+||.+|+.||+||+++.. + ..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~-~---~~~ 76 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGA-G---MPG 76 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccc-c---ccC
Confidence 48999999999999999999999999999999997 478999999999999999999999999999986531 1 000
Q ss_pred CCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCCc
Q psy11884 284 STTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGI 363 (644)
Q Consensus 284 ~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg~ 363 (644)
+ ..|.. + ..|++|+|++|||+++++ . ..+.
T Consensus 77 ~---~~~~~-~----~~d~~d~f~~~fg~~~~~-----------~-~~~~------------------------------ 106 (371)
T PRK14292 77 G---DPFGG-M----GFDPMDIFEQLFGGAGFG-----------G-GRGR------------------------------ 106 (371)
T ss_pred C---cccCc-c----CCChHHHHHHhhCCCCcC-----------C-CCCc------------------------------
Confidence 0 01110 0 136789999999853211 0 0000
Q ss_pred cchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCc-cccCCCCCCcceEEeee----
Q psy11884 364 SITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTK-SVRCTYCQGSGYETTTT---- 438 (644)
Q Consensus 364 ~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~-~~~C~~C~G~G~~~~~~---- 438 (644)
....++.++++.+.|||||+|+|+++++++++.+.|+.|+|+|...+.. ..+|+.|+|+|+++...
T Consensus 107 ---------~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~ 177 (371)
T PRK14292 107 ---------RGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIF 177 (371)
T ss_pred ---------ccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccC
Confidence 0012478899999999999999999999999999999999999877643 78999999999765332
Q ss_pred cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC-------ceEEEEEEeecCCCc
Q psy11884 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ-------DQIFVTFQVIPSSRY 511 (644)
Q Consensus 439 G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g-------gDL~v~i~vkph~~F 511 (644)
|++.++++|+.|+|.|..+..+|+.|.|+|++.+.++++|.||||+.+|++|+|+|.| |||+|+|++++|+.|
T Consensus 178 g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f 257 (371)
T PRK14292 178 GVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPEL 257 (371)
T ss_pred ceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCcc
Confidence 6666778999999999999999999999999999999999999999999999999753 699999999999999
Q ss_pred cccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCH
Q psy11884 512 HRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSE 591 (644)
Q Consensus 512 ~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~ 591 (644)
+|+|+||+++++|++.+|++|+++.|+||||+. .|+||+|+++|++++|+|+|||..++..+|||||+|+|.+|+.|++
T Consensus 258 ~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~ 336 (371)
T PRK14292 258 RREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSP 336 (371)
T ss_pred ccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCH
Confidence 999999999999999999999999999999986 8999999999999999999999866556899999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHHHH
Q psy11884 592 KQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFIKS 637 (644)
Q Consensus 592 ~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (644)
+|+++|++|+..+... + +..-..||.++++|+++
T Consensus 337 ~q~~ll~~~~~~~~~~------~------~~~~~~~~~~~~~~~~~ 370 (371)
T PRK14292 337 EAREALEAYARAVGDE------V------PEPHEGLFDKVGKLFRR 370 (371)
T ss_pred HHHHHHHHHHhhcccc------c------CcccccHHHHHHHHhcC
Confidence 9999999999643111 0 11113788888888764
No 26
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-67 Score=567.63 Aligned_cols=343 Identities=34% Similarity=0.601 Sum_probs=290.9
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDP-NASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~-~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
.|||+||||+++||.+|||+|||+||++||||++++++ +|+++|++|++||++|+|+.+|+.||.||+.++..+ +
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~--~-- 78 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAG--G-- 78 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccC--C--
Confidence 59999999999999999999999999999999998664 799999999999999999999999999998765311 0
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGG 362 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg 362 (644)
++.+..+| ....|++|+|+.|||+. +. ...+++. . .+
T Consensus 79 ~~~~~~~~------~~~~~~~d~f~~~fg~~-~~-----------~~~~~~~-----------~-~~------------- 115 (365)
T PRK14290 79 SNFNWDNF------THFSDINDIFNQIFGGN-FG-----------SDFFSGF-----------G-NQ------------- 115 (365)
T ss_pred CCcccccc------ccccchhHHHHHHhcCc-cc-----------ccccccc-----------c-cc-------------
Confidence 00000111 11136789999999852 11 0001100 0 00
Q ss_pred ccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeee--cC
Q psy11884 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTT--GP 440 (644)
Q Consensus 363 ~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~--G~ 440 (644)
.....++.|+++.|.|||||+|+|+++++.+.+.+.|+.|+|+|...+ ...+|+.|+|+|+++... |+
T Consensus 116 ---------~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~-~~~~C~~C~G~G~~~~~~~~g~ 185 (365)
T PRK14290 116 ---------QSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLITCPTCHGTGQQRIVRGQGF 185 (365)
T ss_pred ---------cCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCC-CCccCCCCCCcCEEEEEeccCe
Confidence 000123679999999999999999999999999999999999998876 578999999999876544 44
Q ss_pred cee--eeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC-------ceEEEEEEeecCCCc
Q psy11884 441 FIM--KTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ-------DQIFVTFQVIPSSRY 511 (644)
Q Consensus 441 ~~~--~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g-------gDL~v~i~vkph~~F 511 (644)
+.+ +++|+.|.|.|++++++|+.|+|.|++.+.++++|.||||+.+|++|+|+|+| |||+|+|++++|+.|
T Consensus 186 ~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F 265 (365)
T PRK14290 186 FRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNI 265 (365)
T ss_pred EEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCE
Confidence 433 57999999999999999999999999999999999999999999999999853 699999999999999
Q ss_pred cccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCH
Q psy11884 512 HRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSE 591 (644)
Q Consensus 512 ~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~ 591 (644)
+|+|+||+++++|+|.+|++|+++.|+|++|. +.|+||+|+++|++++|+|+|||..+...+|||||+|+|.+|+.|++
T Consensus 266 ~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~ 344 (365)
T PRK14290 266 QRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTS 344 (365)
T ss_pred EEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCH
Confidence 99999999999999999999999999999986 79999999999999999999999866556899999999999999999
Q ss_pred HHHHHHHHHhhhC
Q psy11884 592 KQKDLVREFFSVE 604 (644)
Q Consensus 592 ~q~~lL~~l~~~~ 604 (644)
+|+++|++|+...
T Consensus 345 ~~~~ll~~~~~~~ 357 (365)
T PRK14290 345 KQKELIREFFDIK 357 (365)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999654
No 27
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.2e-67 Score=566.97 Aligned_cols=340 Identities=37% Similarity=0.630 Sum_probs=291.1
Q ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCCC
Q psy11884 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASRS 284 (644)
Q Consensus 205 d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~~ 284 (644)
|||++|||+++|+.+|||+|||+||++||||+++ +++|+++|++|++||++|+|+.+|+.||.||.++.+.+..+. +
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~--~ 77 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGG--G 77 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCC--C
Confidence 7999999999999999999999999999999997 477899999999999999999999999999987664221100 0
Q ss_pred CCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCCcc
Q psy11884 285 TTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGIS 364 (644)
Q Consensus 285 ~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg~~ 364 (644)
.+|. .+...+..+++++|++|||++ ++ . +... +
T Consensus 78 ---~~~~-~~~~~~~~~~~~~f~~~fg~~-~g-----------~-~~~~---------------~--------------- 110 (354)
T TIGR02349 78 ---GGFN-GFDIGFFGDFGDIFGDFFGGG-GG-----------S-GRRR---------------R--------------- 110 (354)
T ss_pred ---CCcC-CccccCcCchhhhHHHHhccC-cc-----------c-Cccc---------------c---------------
Confidence 0111 111001135678999999842 11 0 0000 0
Q ss_pred chhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEee--ecC--
Q psy11884 365 ITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT--TGP-- 440 (644)
Q Consensus 365 ~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~--~G~-- 440 (644)
....++.|+++.|.|||||+|+|+++++.+++.+.|+.|+|+|...+....+|+.|+|+|+++.. +||
T Consensus 111 --------~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~ 182 (354)
T TIGR02349 111 --------SGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGF 182 (354)
T ss_pred --------CCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCc
Confidence 00135789999999999999999999999999999999999999988888999999999976543 343
Q ss_pred ceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCCc
Q psy11884 441 FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSRY 511 (644)
Q Consensus 441 ~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~F 511 (644)
++++++|+.|.|+|+.++.+|+.|.|.|++.+.++++|.||||+++|++|+|+++| |||+|+|++++|+.|
T Consensus 183 ~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f 262 (354)
T TIGR02349 183 FQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIF 262 (354)
T ss_pred eEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcce
Confidence 45677999999999999999999999999999999999999999999999999753 699999999999999
Q ss_pred cccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCH
Q psy11884 512 HRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSE 591 (644)
Q Consensus 512 ~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~ 591 (644)
+|+|+||+++++|+|.+||+|+++.|+|+|| .+.|.||+++++|++++|+|+|||..+...+|||||+|+|.+|+.|++
T Consensus 263 ~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~ 341 (354)
T TIGR02349 263 ERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSK 341 (354)
T ss_pred EEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCH
Confidence 9999999999999999999999999999999 579999999999999999999999866557899999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy11884 592 KQKDLVREFFSV 603 (644)
Q Consensus 592 ~q~~lL~~l~~~ 603 (644)
+|+++|+++++.
T Consensus 342 ~~~~~l~~~~~~ 353 (354)
T TIGR02349 342 EQKELLEELAEA 353 (354)
T ss_pred HHHHHHHHHHhh
Confidence 999999999853
No 28
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-67 Score=571.00 Aligned_cols=366 Identities=30% Similarity=0.537 Sum_probs=299.5
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||.||+++.+.+. +.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~-~~- 81 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAA-GG- 81 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCC-CC-
Confidence 4799999999999999999999999999999999988788999999999999999999999999999987653210 00
Q ss_pred CCCCccccccccCCCCCCChHHHHHhh---hCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccc
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKI---FGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTC 359 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~f---FG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~ 359 (644)
.+|.. ...+++++|+.| |++. ++ . .+....++.
T Consensus 82 -----~~~~~-----~~~~~~~~f~~f~~~fg~~-~g-g------~~~~~~~~~-------------------------- 117 (386)
T PRK14289 82 -----GGFSG-----EGMSMEDIFSMFGDIFGGH-GG-G------FGGFGGFGG-------------------------- 117 (386)
T ss_pred -----CCCCC-----CCcChhhhhHHhhhhhccc-cc-C------ccccccccc--------------------------
Confidence 01100 012345555443 5421 00 0 000000000
Q ss_pred cCCccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeee-
Q psy11884 360 IGGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTT- 438 (644)
Q Consensus 360 ~gg~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~- 438 (644)
+ .......++.|+++.|.|||||+|+|+++++++++.+.|+.|+|+|...+.....|+.|+|+|+++...
T Consensus 118 --~-------~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~ 188 (386)
T PRK14289 118 --G-------GSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQN 188 (386)
T ss_pred --c-------cccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEe
Confidence 0 000011257899999999999999999999999999999999999999888899999999999875433
Q ss_pred ---cCceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEee
Q psy11884 439 ---GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVI 506 (644)
Q Consensus 439 ---G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vk 506 (644)
|+++++.+|+.|+|+|++++.+|+.|.|+|++.+.++++|.||||+++|++|++++.| |||+|+|+++
T Consensus 189 ~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~ 268 (386)
T PRK14289 189 TILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEE 268 (386)
T ss_pred cccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEe
Confidence 5666788999999999999999999999999999999999999999999999999742 6999999999
Q ss_pred cCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECC
Q psy11884 507 PSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVP 586 (644)
Q Consensus 507 ph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP 586 (644)
+|+.|+|+|+||++++.|+|.+|++|+++.|+|+||+ +.|.||+|+++|++++|+|+|||..+...+|||||+|+|.||
T Consensus 269 ~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P 347 (386)
T PRK14289 269 PHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIP 347 (386)
T ss_pred cCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeC
Confidence 9999999999999999999999999999999999997 699999999999999999999997665578999999999999
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCCCCCCCCccccCccchhhhhHHHHHHH
Q psy11884 587 RYPSEKQKDLVREFFSVEPNTNGNKDDSNQALSGYRDIFLFFSRLIDFI 635 (644)
Q Consensus 587 ~~Ls~~q~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (644)
+.|+++|+++|++|+...... +..+ -+ ..||++++.|+
T Consensus 348 ~~l~~~q~~~l~~l~~~~~~~------~~~~---~~--~~~~~~~~~~~ 385 (386)
T PRK14289 348 ETLSKEEKQTLEKMENSDNFK------PTTS---IK--EKIFKKFKSFF 385 (386)
T ss_pred CCCCHHHHHHHHHHHhhcCCC------CCcc---hh--hhHHHHHHHhh
Confidence 999999999999999753211 1101 11 26778888775
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-66 Score=560.21 Aligned_cols=339 Identities=33% Similarity=0.623 Sum_probs=289.4
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASR 283 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~ 283 (644)
.|||+||||+++||.+|||+|||+||++||||+++. +.|+++|++|++||++|+||.+|+.||.||++++..+ .+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~-~~--- 77 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGA-AG--- 77 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccC-CC---
Confidence 599999999999999999999999999999999974 6789999999999999999999999999998655311 00
Q ss_pred CCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCCc
Q psy11884 284 STTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGI 363 (644)
Q Consensus 284 ~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg~ 363 (644)
..++. . ..++.|+|++|||+.+.. + +.+.+ + +
T Consensus 78 ---~~~~~---~---~~~~~d~f~~~fg~~~~~-----------~-~~~~~--------------~------~------- 109 (374)
T PRK14293 78 ---FPDMG---D---MGGFADIFETFFSGFGGA-----------G-GQGGR--------------R------R------- 109 (374)
T ss_pred ---cCCcc---c---ccchHHHHHHHhcccCCC-----------C-CCCcc--------------c------c-------
Confidence 00000 0 113568899999741000 0 00000 0 0
Q ss_pred cchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEee--e--c
Q psy11884 364 SITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT--T--G 439 (644)
Q Consensus 364 ~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~--~--G 439 (644)
.....++.++++.|.|||||+|+|+++++++++.+.|+.|+|+|...+....+|+.|+|+|++... + |
T Consensus 110 --------~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g 181 (374)
T PRK14293 110 --------RRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFG 181 (374)
T ss_pred --------ccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcc
Confidence 000124778999999999999999999999999999999999999988888999999999976543 3 4
Q ss_pred CceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecC---------CceEEEEEEeecCCC
Q psy11884 440 PFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIG---------QDQIFVTFQVIPSSR 510 (644)
Q Consensus 440 ~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~---------ggDL~v~i~vkph~~ 510 (644)
+++++.+|+.|.|.|+.++++|+.|.|.|++.+.++++|.||||+++|++|+|++. .|||+|+|++++|+.
T Consensus 182 ~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~ 261 (374)
T PRK14293 182 SFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPE 261 (374)
T ss_pred eEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCc
Confidence 56677899999999999999999999999999999999999999999999999974 269999999999999
Q ss_pred ccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCC-CCCccEEEEEEEECCCCC
Q psy11884 511 YHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNS-SGYGHHFVHVKIEVPRYP 589 (644)
Q Consensus 511 F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~-~~rGDL~V~f~V~fP~~L 589 (644)
|+|+|+||+++++|++.+|++|+++.|+|+||+ +.|+||+++++|++++|+|+|||..+. ..+|||||+|+|.||+.|
T Consensus 262 f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l 340 (374)
T PRK14293 262 FRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRI 340 (374)
T ss_pred cChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCC
Confidence 999999999999999999999999999999997 699999999999999999999997544 358999999999999999
Q ss_pred CHHHHHHHHHHhhhC
Q psy11884 590 SEKQKDLVREFFSVE 604 (644)
Q Consensus 590 s~~q~~lL~~l~~~~ 604 (644)
+++|+++|++|++.+
T Consensus 341 ~~~~~~l~~~l~~~~ 355 (374)
T PRK14293 341 SDEERELLEKLAKIK 355 (374)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999999764
No 30
>KOG0712|consensus
Probab=100.00 E-value=9.6e-63 Score=515.42 Aligned_cols=318 Identities=31% Similarity=0.524 Sum_probs=281.6
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
...+|+||||+++||.+|||+|||+||++||||||+. |.++|++|++||+|||||+||++||+||+++++.++++++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g 79 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG 79 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC
Confidence 4679999999999999999999999999999999975 7899999999999999999999999999998865432211
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGG 362 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg 362 (644)
+ . . |++||+.++.+ +.
T Consensus 80 -------~------~---~----f~~~F~~g~~~-------------~~------------------------------- 95 (337)
T KOG0712|consen 80 -------F------G---G----FSQFFGFGGNG-------------GR------------------------------- 95 (337)
T ss_pred -------C------c---c----HHHhccCCCcC-------------cc-------------------------------
Confidence 1 0 1 78888832211 00
Q ss_pred ccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceE--EeeecC
Q psy11884 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYE--TTTTGP 440 (644)
Q Consensus 363 ~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~--~~~~G~ 440 (644)
...+|.|+++.|+|||||+|+|.++++.++++.+|+.|+|.|..+++. ..|+.|.|+|+. +.++||
T Consensus 96 -----------~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~-~~C~~C~GsGv~~~~~~~gP 163 (337)
T KOG0712|consen 96 -----------GRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSA-PKCTTCRGSGVQTRTRQMGP 163 (337)
T ss_pred -----------ccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCC-CCCCCCCCCCceeEEEeccc
Confidence 012378999999999999999999999999999999999999988754 489999999975 457888
Q ss_pred c---eeeeecCCCCceeEEE--eeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC--------ceEEEEEEeec
Q psy11884 441 F---IMKTTCRYCSGSGIYI--KFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ--------DQIFVTFQVIP 507 (644)
Q Consensus 441 ~---~~~~~C~~C~G~G~~i--~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g--------gDL~v~i~vkp 507 (644)
. .++.+|..|+|+|..+ ++.|+.|.|++++.+.+.++|.|+||++++++|.+.+++ +|+++.|..++
T Consensus 164 g~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i~~k~ 243 (337)
T KOG0712|consen 164 GMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLIDQKE 243 (337)
T ss_pred cccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEecccc
Confidence 3 2567999999999984 689999999999999999999999999999999999864 78999999999
Q ss_pred CCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCC--CCCCcEEEEcCCCcCCCCCCCCccEEEEEEEEC
Q psy11884 508 SSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPG--TSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEV 585 (644)
Q Consensus 508 h~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG--~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~f 585 (644)
|+.|.|.|+||++..+|++.||+||+.+.+.|+||+.|.|.++|| +.+|++++|+|+|||+.+.. +|||||+|+|+|
T Consensus 244 h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~f 322 (337)
T KOG0712|consen 244 HPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKF 322 (337)
T ss_pred cccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC-CCcEEEEEEEEc
Confidence 999999999999999999999999999999999999999999998 68999999999999997654 999999999999
Q ss_pred CCCCCHHHHHHHHHHh
Q psy11884 586 PRYPSEKQKDLVREFF 601 (644)
Q Consensus 586 P~~Ls~~q~~lL~~l~ 601 (644)
|+ +++++..+|++++
T Consensus 323 p~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 323 PK-LSPSQLKMLEDLL 337 (337)
T ss_pred CC-CChHHHHHHHhhC
Confidence 99 9999999998864
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.8e-53 Score=442.87 Aligned_cols=279 Identities=34% Similarity=0.628 Sum_probs=227.0
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||+||.++...+..+..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~ 81 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPP 81 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCC
Confidence 469999999999999999999999999999999997 4789999999999999999999999999999875432211110
Q ss_pred -CCCCccccccccCCCCCCChHHHHHhhhCCCC-CCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhccccccc
Q psy11884 283 -RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTG-FDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCI 360 (644)
Q Consensus 283 -~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~-f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~ 360 (644)
++.+..+|. .+. ..+++|+|++|||+.+ ++ +++. .+.
T Consensus 82 ~~~~~~~~~~-~~~---~~~~~d~f~~~fgg~~~~~-------------~~g~----------~~~-------------- 120 (291)
T PRK14299 82 PGPPGGGDFS-GFN---VGDFSDFFQQLFGGRGGFG-------------GFGD----------LFG-------------- 120 (291)
T ss_pred CCCCCCCCcc-ccC---cCCHHHHHHHHhCCCCCCC-------------Cccc----------ccc--------------
Confidence 000111111 011 1367899999998421 11 0110 000
Q ss_pred CCccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecC
Q psy11884 361 GGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGP 440 (644)
Q Consensus 361 gg~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~ 440 (644)
.+. ....+|.|+++.+.|||+|+|.|+++++++.
T Consensus 121 --------~~~-~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~------------------------------------- 154 (291)
T PRK14299 121 --------SVG-RRARKGRDLEAELPLTLEEAYRGGEKVVEVA------------------------------------- 154 (291)
T ss_pred --------ccc-CCCCCCCCEEEEEEecHHHHhCCCeEEEeeC-------------------------------------
Confidence 000 0013578999999999999999999988652
Q ss_pred ceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---ceEEEEEEeecCCCccccCCC
Q psy11884 441 FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---DQIFVTFQVIPSSRYHRDQSD 517 (644)
Q Consensus 441 ~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---gDL~v~i~vkph~~F~R~G~D 517 (644)
.++++|.||||+++|++|++++.| |||+|+|++++|+.|+|+|+|
T Consensus 155 --------------------------------g~~~~V~Ip~G~~~G~~ir~~g~G~~~GDL~v~i~v~~h~~f~R~G~D 202 (291)
T PRK14299 155 --------------------------------GERLSVRIPPGVREGQVIRLAGKGRQGGDLYLVVRLLPHPVFRLEGDD 202 (291)
T ss_pred --------------------------------CEEEEEecCCCcCCCcEEEECCCCCCCCCEEEEEEEcCCCCeEEECCE
Confidence 136789999999999999999876 799999999999999999999
Q ss_pred eEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHH
Q psy11884 518 IHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLV 597 (644)
Q Consensus 518 L~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q~~lL 597 (644)
|+++++|++.+|++|+++.|+|+||+ +.|+||+++++|++++|+|+|||.. .+.+|||||+|+|.+|+.|+++|+++|
T Consensus 203 L~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~~~~g~~~rl~g~G~p~~-~~~~GDL~v~~~V~~P~~l~~~~~~~l 280 (291)
T PRK14299 203 LYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPRTQAGRKLRLKGKGWPRG-PAGRGDQYAEVRITIPTRPTPEEERLY 280 (291)
T ss_pred EEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCCcCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999999997 6999999999999999999999964 346899999999999999999999999
Q ss_pred HHHhhh
Q psy11884 598 REFFSV 603 (644)
Q Consensus 598 ~~l~~~ 603 (644)
++|++.
T Consensus 281 ~~l~~~ 286 (291)
T PRK14299 281 KQLAEL 286 (291)
T ss_pred HHHHhh
Confidence 999865
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=2.1e-50 Score=425.70 Aligned_cols=282 Identities=27% Similarity=0.459 Sum_probs=227.1
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
.+|||++|||+++||.+|||+|||+||++||||+++. +.|+++|++|++||++|+|+.+|+.||.||......+. +..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~-~~~ 80 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQF-NRQ 80 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccc-ccc
Confidence 4699999999999999999999999999999999874 68999999999999999999999999999854211110 000
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGG 362 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg 362 (644)
.+.+. + ..+ ...|++++|+.|||.++ . ... + +
T Consensus 81 ~~~~~-~----~~~-~~~~~~~~f~~~~g~~~-~--------------~~~---------------~------~------ 112 (306)
T PRK10266 81 FQHGD-G----QSF-NAEDFDDIFSSIFGQHA-R--------------QSR---------------Q------R------ 112 (306)
T ss_pred cccCC-C----CCC-CCCCHHHHHHHHhCCCC-C--------------CCC---------------C------C------
Confidence 00000 0 001 12367899999987411 0 000 0 0
Q ss_pred ccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCce
Q psy11884 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFI 442 (644)
Q Consensus 363 ~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~ 442 (644)
...+|.|+.+.+.|||+|+|.|+.+++.+++.+ | .|.|+..
T Consensus 113 -----------~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~-----------------~g~G~~~------- 153 (306)
T PRK10266 113 -----------PAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y-----------------NAFGMIE------- 153 (306)
T ss_pred -----------CCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c-----------------cCCCeEE-------
Confidence 012477899999999999999999999987532 1 1222110
Q ss_pred eeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC---------ceEEEEEEeecCCCccc
Q psy11884 443 MKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ---------DQIFVTFQVIPSSRYHR 513 (644)
Q Consensus 443 ~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g---------gDL~v~i~vkph~~F~R 513 (644)
...+++++|.||||+++|++|++++.| |||+|+|+++||+.|+|
T Consensus 154 ---------------------------~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r 206 (306)
T PRK10266 154 ---------------------------QEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDI 206 (306)
T ss_pred ---------------------------EeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEE
Confidence 012368999999999999999999742 69999999999999999
Q ss_pred cCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 514 DQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 514 ~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
+|+||+++++|++.+|++|+++.|+|++|+ +.|+||+++++|++++|+|+|||..+ .+|||||+|+|.+|+.|+++|
T Consensus 207 ~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g~~~g~~~ri~g~G~p~~~--~~GdL~v~~~v~~P~~l~~~q 283 (306)
T PRK10266 207 VGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPGSQAGQRLRVKGKGLVSKK--QTGDLYAVLKIVMPPKPDEKT 283 (306)
T ss_pred eCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCCcCCCCEEEECCCCCCCCC--CCCCEEEEEEEECCCCCCHHH
Confidence 999999999999999999999999999998 69999999999999999999999753 589999999999999999999
Q ss_pred HHHHHHHhhh
Q psy11884 594 KDLVREFFSV 603 (644)
Q Consensus 594 ~~lL~~l~~~ 603 (644)
+++|++|+..
T Consensus 284 ~~l~~~l~~~ 293 (306)
T PRK10266 284 AALWQQLADA 293 (306)
T ss_pred HHHHHHHHhh
Confidence 9999999975
No 33
>KOG0715|consensus
Probab=100.00 E-value=9.8e-38 Score=325.93 Aligned_cols=244 Identities=40% Similarity=0.729 Sum_probs=212.5
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASR 283 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~~ 283 (644)
.|||+||||+++|+..|||+||++||++||||.|.. +.|+++|++|.+|||+|+|+++|+.||.+|..+. +.
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~-----~~-- 114 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH-----GE-- 114 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc-----cc--
Confidence 399999999999999999999999999999999987 5899999999999999999999999999986541 00
Q ss_pred CCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccCCc
Q psy11884 284 STTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGI 363 (644)
Q Consensus 284 ~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~gg~ 363 (644)
...+|.++|..+|+...+.
T Consensus 115 --------------~~g~~~~~~~~~~~~~~~~----------------------------------------------- 133 (288)
T KOG0715|consen 115 --------------FGGNPFDVFLEFFGGKMNK----------------------------------------------- 133 (288)
T ss_pred --------------ccCCccchHHHhhcccccc-----------------------------------------------
Confidence 0125667787777641000
Q ss_pred cchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcce-EEeeecCce
Q psy11884 364 SITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGY-ETTTTGPFI 442 (644)
Q Consensus 364 ~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~-~~~~~G~~~ 442 (644)
...+.++++.+.++|++|..|+.+.+.+.....|.+|.|.|.+++.+...|+.|.|.|. ......++.
T Consensus 134 -----------~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 202 (288)
T KOG0715|consen 134 -----------RVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFI 202 (288)
T ss_pred -----------cccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCcccccccccCCcc
Confidence 01234556678899999999999999999999999999999999999999999999994 344566666
Q ss_pred eeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCCc-eEEEEEEeecCCCccccCCCeEEE
Q psy11884 443 MKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQD-QIFVTFQVIPSSRYHRDQSDIHTE 521 (644)
Q Consensus 443 ~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~gg-DL~v~i~vkph~~F~R~G~DL~~~ 521 (644)
.. +|..|.|.|.+..+.|..|.|.|.+...+.+.|.||+|+.++.+|++.+.+. +|+|.+.|.+++.|+|+|.|++++
T Consensus 203 ~~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~~l~v~~~v~~~~~~~r~~~~i~~~ 281 (288)
T KOG0715|consen 203 LY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGNDDLFVRLIVAKSPSFRREGKDILYD 281 (288)
T ss_pred ee-ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcceEEEEEEeccCcccccccCccccc
Confidence 66 9999999999999999999999999999999999999999999999999876 999999999999999999999999
Q ss_pred EecCHhH
Q psy11884 522 ESISISQ 528 (644)
Q Consensus 522 ~~Isl~e 528 (644)
+.|++.+
T Consensus 282 ~~i~~~~ 288 (288)
T KOG0715|consen 282 AIISFTQ 288 (288)
T ss_pred ccccccC
Confidence 9998753
No 34
>KOG0713|consensus
Probab=100.00 E-value=3.1e-38 Score=327.53 Aligned_cols=304 Identities=28% Similarity=0.464 Sum_probs=232.9
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCC
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGA 281 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~ 281 (644)
..+|||++|||+++|+..|||+|||+||+++|||||+++|.|.++|++|+.||+|||||++|+.||.+|++++.......
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~ 93 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDG 93 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998886321111
Q ss_pred CCCCCccccccccCCCCCCChHHHHHhhhCCCCCCcchhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccccC
Q psy11884 282 SRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIG 361 (644)
Q Consensus 282 ~~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~f~~~~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~~g 361 (644)
.++. .-.++|+.||+.-++. +++ .+.+
T Consensus 94 ~~g~---------------~~~~~f~~~f~dfg~~--------------~~g--------------~~~~---------- 120 (336)
T KOG0713|consen 94 EGGG---------------GGNDIFSAFFGDFGVT--------------VGG--------------NPLE---------- 120 (336)
T ss_pred ccCC---------------cccchHHHhhcccccc--------------cCC--------------Cccc----------
Confidence 1000 0035688888863222 110 0000
Q ss_pred CccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCc
Q psy11884 362 GISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPF 441 (644)
Q Consensus 362 g~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~ 441 (644)
...+.|.++...+..++++.|.|...+...+..+.|.. .|+ ....|+.
T Consensus 121 -----------e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g~------~~~~~~~-------------- 168 (336)
T KOG0713|consen 121 -----------EALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PGT------RKCNCRL-------------- 168 (336)
T ss_pred -----------CCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-Ccc------cccCChh--------------
Confidence 00245778888899999999999865555554443322 211 1111211
Q ss_pred eeeeecCCCCceeEEE-eeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecC--------CceEEEEEEeecCCCcc
Q psy11884 442 IMKTTCRYCSGSGIYI-KFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIG--------QDQIFVTFQVIPSSRYH 512 (644)
Q Consensus 442 ~~~~~C~~C~G~G~~i-~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~--------ggDL~v~i~vkph~~F~ 512 (644)
....|..|.|....+ ...|..|.+.+...++..+++.+..|+.+|....+... .||+++.+..-+|+.|.
T Consensus 169 -~~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~ 247 (336)
T KOG0713|consen 169 -EMFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFE 247 (336)
T ss_pred -hheeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEeccccee
Confidence 011222233333322 35688888888889999999999999999998887753 37999999999999999
Q ss_pred ccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCC-CCCCCCccEEEEEEEECCC-CCC
Q psy11884 513 RDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKN-RNSSGYGHHFVHVKIEVPR-YPS 590 (644)
Q Consensus 513 R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~-~~~~~rGDL~V~f~V~fP~-~Ls 590 (644)
|+++||++++.+++.+++.|+...+.++|+..+.+....++.|+..++..++|||. .+....|+++++|.+.+|. .++
T Consensus 248 ~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~ 327 (336)
T KOG0713|consen 248 RKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLS 327 (336)
T ss_pred cCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccchhhhccchhcceeEEecccCcccccc
Confidence 99999999999999999999999999999988888888889999999999999996 3455789999999999995 455
Q ss_pred H
Q psy11884 591 E 591 (644)
Q Consensus 591 ~ 591 (644)
.
T Consensus 328 ~ 328 (336)
T KOG0713|consen 328 D 328 (336)
T ss_pred h
Confidence 5
No 35
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=2e-34 Score=322.96 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=131.2
Q ss_pred ceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEee
Q psy11884 380 SQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKF 459 (644)
Q Consensus 380 d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~ 459 (644)
+++..|.|||+++|+|++++|++.|.+.| |.
T Consensus 658 dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~--------------------------------------------- 688 (871)
T TIGR03835 658 NLVYEEEVPQILFFNNQIKEIKYTRHTVD----GN--------------------------------------------- 688 (871)
T ss_pred ceEEecccCHHHHhCCCeEEEEEEEeecc----CC---------------------------------------------
Confidence 35678899999999999999999876543 11
Q ss_pred ccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC-------ceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcC
Q psy11884 460 PCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ-------DQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILG 532 (644)
Q Consensus 460 ~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g-------gDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG 532 (644)
|...+.+.++++|.||||+++|++|+|+|.| |||+|+|+++||+.|+|+|+||++++.|+|.+||+|
T Consensus 689 ------G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLG 762 (871)
T TIGR03835 689 ------TESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGCGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNG 762 (871)
T ss_pred ------CcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCCCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcC
Confidence 1123445679999999999999999999743 699999999999999999999999999999999999
Q ss_pred CEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEEC
Q psy11884 533 GTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEV 585 (644)
Q Consensus 533 ~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~f 585 (644)
+++.|+||||+ +.|+||+|+++|++++|+|+|||..+ +.+|||||+|.|.-
T Consensus 763 gtIeIpTLDGr-VkLkIPpgTqpGqvLRIkGKGMP~~~-~~RGDLyV~f~V~~ 813 (871)
T TIGR03835 763 GIIDVFGPNKL-FNVRIPGGIKVNDQVIFKDLGLTKTK-YDKGSLIVHLYYSS 813 (871)
T ss_pred CEEEeeCCCCC-EEEeeCCCCCCCcEEEECCCCCCCCC-CCCCCEEEEEEEee
Confidence 99999999997 79999999999999999999999643 46899999999974
No 36
>KOG0714|consensus
Probab=99.82 E-value=4.5e-19 Score=182.33 Aligned_cols=290 Identities=29% Similarity=0.407 Sum_probs=186.0
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTD-PNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGA 281 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~-~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~ 281 (644)
..|+|++|+|.++|+.+||++|||+||+++|||+++.. ..|+++|++|++||++|+|+.+|..||.+|+++.... +.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~--~~ 79 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGG--GS 79 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccC--CC
Confidence 46999999999999999999999999999999998764 2466689999999999999999999999998555431 11
Q ss_pred CCCCCccccccccCCCCCCChHHHHHhhhCCCC-CCcc-hhhHHHhhccCCCCCchhhhhhhhhccccCcchhhcccccc
Q psy11884 282 SRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTG-FDFK-VTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTC 359 (644)
Q Consensus 282 ~~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~~-f~~~-~~~~~~~~~~~~f~~s~~~~~~~~k~~~~~p~~~~~qr~~~ 359 (644)
..+ .+..........++.+.|..|||... +... ....+. ...++. +.........+....+ ...+...
T Consensus 80 ~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~ 149 (306)
T KOG0714|consen 80 FSS----SFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDK---NAAPGE--EAFKSEGKAFQSLYGP-KRKQYDS 149 (306)
T ss_pred CCC----CCCCCcceeccCchhhhHHHHhCCCCCCccccccCCcc---ccccCc--cccccccccccccCCC-ccccccc
Confidence 000 00000000112467888999998422 1100 000000 000000 0000000000000000 0000000
Q ss_pred cCCccchhhhhhhccCCCCCceEEEEecCHHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeec
Q psy11884 360 IGGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTG 439 (644)
Q Consensus 360 ~gg~~~~~~~~~~~~~~~g~d~ev~L~vTLeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G 439 (644)
. ... ........+...+.+++++.+.|+.+...+.+...=
T Consensus 150 ~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 189 (306)
T KOG0714|consen 150 S------GSD---RSARQSPPVEHPLRVSLEDLYKGESKKMKISRQSFT------------------------------- 189 (306)
T ss_pred c------ccc---ccccCCCCccCCcceeHHHhccccceeeeccccccc-------------------------------
Confidence 0 000 000111223444555899999998888877643210
Q ss_pred CceeeeecCCCCceeEEEeeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEecCC--------ceEEEEEEeecCCCc
Q psy11884 440 PFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ--------DQIFVTFQVIPSSRY 511 (644)
Q Consensus 440 ~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~g--------gDL~v~i~vkph~~F 511 (644)
.... ........+.+.+.+++..|+.+.....+ -++++.+..++|+.|
T Consensus 190 --------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~ 245 (306)
T KOG0714|consen 190 --------------------SNGR----EGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLF 245 (306)
T ss_pred --------------------CCcc----cccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccc
Confidence 0000 01234567889999999999999998654 356777788999999
Q ss_pred cccCCCeEEE--EecCHhHhhcCCEEEEEeeeCcEEEEEeC-CCCCCCcEEEEcCCCcCC
Q psy11884 512 HRDQSDIHTE--ESISISQAILGGTINVEGIYGDTLSVEIQ-PGTSSHTKIKIPYKGLKN 568 (644)
Q Consensus 512 ~R~G~DL~~~--~~Isl~eALlG~~~~I~tLdG~~l~V~Ip-pG~~~g~~irI~GeG~P~ 568 (644)
.+.+.||... ..|++.+|++|....++++++..+.+.+. .-+.++...+++++|+|.
T Consensus 246 ~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 246 SRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred cCCCccceecccceeehhhhhcCcceeeecccCccccCcccccccCCCceeeecCCCCCC
Confidence 9999999999 99999999999999999999988777776 667889999999999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.78 E-value=3.3e-19 Score=153.07 Aligned_cols=80 Identities=33% Similarity=0.574 Sum_probs=69.4
Q ss_pred CeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCC-CCccEEEEEEEECCCCCCHHHHH
Q psy11884 517 DIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSS-GYGHHFVHVKIEVPRYPSEKQKD 595 (644)
Q Consensus 517 DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~-~rGDL~V~f~V~fP~~Ls~~q~~ 595 (644)
||+++++|++++|++|+++.|+|+||+.+.|+||+++++|++++|+|+|||..... .+|||||+|+|.+|++||++|++
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 89999999999999999999999999889999999999999999999999986554 79999999999999999999998
Q ss_pred H
Q psy11884 596 L 596 (644)
Q Consensus 596 l 596 (644)
|
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 6
No 38
>KOG0716|consensus
Probab=99.68 E-value=1.6e-17 Score=168.61 Aligned_cols=74 Identities=49% Similarity=0.829 Sum_probs=70.3
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCcccc
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQ 275 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~ 275 (644)
...|+|+|||++++|+.++||||||+||+++|||+++++|++.++|++||+||++|+||.+|..||.||+.++.
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999987664
No 39
>KOG0691|consensus
Probab=99.64 E-value=1.3e-16 Score=166.74 Aligned_cols=90 Identities=48% Similarity=0.789 Sum_probs=79.3
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccCCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g~~ 282 (644)
..|||++|||+.+|+..||++|||+.|++||||||++||.|.++|+.|.+||+||+|+.+|..||.+|.......
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----- 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----- 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence 469999999999999999999999999999999999999999999999999999999999999999986544211
Q ss_pred CCCCccccccccCCCCCCChHHHHHhhhCC
Q psy11884 283 RSTTAEDYMHRWNFKSSVDPEELFRKIFGD 312 (644)
Q Consensus 283 ~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~ 312 (644)
. ..|+.+.|.+.|++
T Consensus 79 ------~---------~~d~~~~~r~~f~~ 93 (296)
T KOG0691|consen 79 ------G---------REDQADGFRKKFGS 93 (296)
T ss_pred ------h---------hhhHHHHHHHHhhh
Confidence 1 13677888888885
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.63 E-value=2.9e-16 Score=181.10 Aligned_cols=72 Identities=32% Similarity=0.642 Sum_probs=67.6
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccc
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSE 274 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~ 274 (644)
...+||++|||+++||..+||+|||+||++||||+++++ .|.++|++|++||++|+||.+|+.||.||..+.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl 642 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence 468999999999999999999999999999999999874 788999999999999999999999999998654
No 41
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.61 E-value=3.8e-16 Score=127.48 Aligned_cols=63 Identities=51% Similarity=0.893 Sum_probs=59.8
Q ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHhhhhhhhhcCccccccccc
Q psy11884 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDP-NASKKFHEVSEAYEVLSDDTKRQEYD 267 (644)
Q Consensus 205 d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~-~a~e~f~~I~~AYevLsd~~kR~~YD 267 (644)
|||+||||+++++.++||++|+++++++|||++..+. .+.+.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987754 58999999999999999999999998
No 42
>KOG0718|consensus
Probab=99.60 E-value=7.8e-16 Score=165.31 Aligned_cols=74 Identities=38% Similarity=0.697 Sum_probs=68.8
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHhhhhhhhhcCcccccccccccCCcccc
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTD---PNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQ 275 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~---~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~ 275 (644)
...|||.+|+|+++||.+|||+|||++++.|||||..+. ..|++.|+.|.+|||||+||.+|++||.||+++++
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 456999999999999999999999999999999997642 35999999999999999999999999999999987
No 43
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.59 E-value=1.2e-15 Score=158.74 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=98.3
Q ss_pred eeeeeeccCCCCCccchhhhccHHHHHHHHHHHHHhCCChhhHhhhHhhhhhhccccccCCCchhhhccccccccCCccc
Q psy11884 120 FYSIQTSPQGSVGSGLMKTLVLQKVLTMILSLKAVIRVPPRLFSSFKYGALQLNRFHLVNPQPLIYLRHSAHFHTSPSLS 199 (644)
Q Consensus 120 ~~~~~~s~~~~~~~~~~~~~l~~~e~~~L~~vaai~~i~~~~~~~l~~~~~~~~R~~~~~~~~~~~~~~~~~~~~s~~~~ 199 (644)
|++++...+.+||. +++.|..+|++|+.+|++++..|.++..+.....+|+..... ...+.+ ..
T Consensus 132 lL~~l~~vA~ADG~------l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~--------~~~~~~--~~ 195 (267)
T PRK09430 132 FLEIQIQAAFADGS------LHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGG--------GGYQQA--QR 195 (267)
T ss_pred HHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccc--------cccccc--cC
Confidence 55778888888888 999999999999999999999999999777665555321000 000000 01
Q ss_pred CCCccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hHHHHHHHhhhhhhhhcCcc
Q psy11884 200 NLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKT--D-----PNASKKFHEVSEAYEVLSDD 260 (644)
Q Consensus 200 ~~~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~--~-----~~a~e~f~~I~~AYevLsd~ 260 (644)
.+...|+|++|||++++|.+|||+|||+|+++||||++.+ . +.|+++|++|++||++|+..
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 1345799999999999999999999999999999999643 1 35899999999999999864
No 44
>KOG0717|consensus
Probab=99.57 E-value=1.6e-15 Score=162.89 Aligned_cols=73 Identities=40% Similarity=0.706 Sum_probs=67.2
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHhhhhhhhhcCcccccccccccCCccc
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTD-PNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSE 274 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~-~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~ 274 (644)
+.+.||+||||.++|++.|||++||+||++||||+|+.. .+|+++|+.|++||+|||||..|+-||.+.+.-+
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 567899999999999999999999999999999998765 6799999999999999999999999999766444
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.54 E-value=6.7e-15 Score=140.50 Aligned_cols=86 Identities=21% Similarity=0.373 Sum_probs=72.9
Q ss_pred ccChhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccccccccC
Q psy11884 203 RKDYYQILGISKNS--SAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAG 280 (644)
Q Consensus 203 ~~d~Y~vLGv~~~a--s~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~~~~g 280 (644)
.+.+|++|||+++| |.+|||+|||++|+++|||++++ .++|++|++||++|+|+.+|..||.+|.+.....
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~--- 76 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE--- 76 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcccccc---
Confidence 35799999999999 99999999999999999999754 4799999999999999999999999996544211
Q ss_pred CCCCCCccccccccCCCCCCChHHHHHhhhCCC
Q psy11884 281 ASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDT 313 (644)
Q Consensus 281 ~~~~~~~~~f~~~~~~~~~~d~~dlF~~fFG~~ 313 (644)
...|.++|..+||+.
T Consensus 77 ------------------~~~~~~~f~~~fg~~ 91 (153)
T PHA03102 77 ------------------EDVPSGYVGATFGDR 91 (153)
T ss_pred ------------------cccHHHHhhhhcCCc
Confidence 013778888888864
No 46
>KOG0624|consensus
Probab=99.53 E-value=9.1e-15 Score=152.79 Aligned_cols=74 Identities=45% Similarity=0.779 Sum_probs=67.1
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHhhhhhhhhcCcccccccccccCCccccc
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDP---NASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQM 276 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~---~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~~~ 276 (644)
..+|||+||||.++|+..||.||||+||.+||||--.+.. .|+++|..|.+|-+||+||++|++||. |++.++.
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence 5789999999999999999999999999999999866432 499999999999999999999999998 7777754
No 47
>KOG0719|consensus
Probab=99.52 E-value=6.3e-15 Score=146.66 Aligned_cols=72 Identities=42% Similarity=0.799 Sum_probs=65.5
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHhhhhhhhhcCcccccccccccCCcc
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNK--TDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATS 273 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~--~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~ 273 (644)
..+|+|+||||.++|++.+|++|||+||+++|||+++ .+.+|+++|+.|+.||.||+|+++|+.||..|.-.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 3459999999999999999999999999999999984 34579999999999999999999999999988533
No 48
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.52 E-value=2e-14 Score=115.50 Aligned_cols=59 Identities=58% Similarity=0.928 Sum_probs=54.7
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHhhhhhhhhcCcccc
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKT-DPNASKKFHEVSEAYEVLSDDTK 262 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~-~~~a~e~f~~I~~AYevLsd~~k 262 (644)
.|||++|||+++++.++||+||++|++++|||++++ .+.+.+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 389999999999999999999999999999999875 47789999999999999999853
No 49
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.48 E-value=6e-14 Score=110.62 Aligned_cols=55 Identities=64% Similarity=1.046 Sum_probs=51.8
Q ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCc
Q psy11884 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSD 259 (644)
Q Consensus 205 d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd 259 (644)
|||++|||+++++.++||++||+|++++|||++.+.+.+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999987646789999999999999986
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.8e-14 Score=136.88 Aligned_cols=69 Identities=58% Similarity=0.946 Sum_probs=65.3
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-HHHHHHhhhhhhhhcCcccccccccccC
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN-ASKKFHEVSEAYEVLSDDTKRQEYDTWG 270 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~-a~e~f~~I~~AYevLsd~~kR~~YD~~G 270 (644)
...++|+||||+++|+..||++|||++|+++|||+++.++. +.++|+.|++||++|+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45799999999999999999999999999999999998775 9999999999999999999999999974
No 51
>KOG0721|consensus
Probab=99.44 E-value=8.2e-14 Score=137.72 Aligned_cols=70 Identities=37% Similarity=0.725 Sum_probs=64.4
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCC
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGA 271 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~ 271 (644)
..-|||+||||+++||+.|||+|||+|++++||||++...+.++.|..|++||+.|+|+..|..|..||.
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 4569999999999999999999999999999999987534568889999999999999999999999985
No 52
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=1.9e-12 Score=140.73 Aligned_cols=116 Identities=24% Similarity=0.477 Sum_probs=92.1
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|.. +.....+|+.|+|+|.+. ..+|+.|.|.|.+
T Consensus 136 ~r~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~----------------- 193 (371)
T PRK14287 136 PREETCGTCHGSGAK-----PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI----------------- 193 (371)
T ss_pred eeeccCCCCCCcccC-----CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc-----------------
Confidence 456799999999964 122346799999999764 3579999999965
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
|.-.++.|++...|. +.+.|+|.||+|+.+|++++|+|+|+|
T Consensus 194 ------------------------------------~~~~C~~C~G~g~v~--~~~~l~V~Ip~G~~~G~~i~~~G~G~~ 235 (371)
T PRK14287 194 ------------------------------------IKQKCATCGGKGKVR--KRKKINVKVPAGIDHGQQLRVSGQGEA 235 (371)
T ss_pred ------------------------------------ccccCCCCCCeeEEe--eeEEEEEEECCcCCCCCEEEEccCCcC
Confidence 223477888888886 457899999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQKD 595 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q~~ 595 (644)
..+....|||||+|+|.-++.+..+..+
T Consensus 236 ~~~~~~~GDL~v~i~v~~h~~F~R~G~D 263 (371)
T PRK14287 236 GVNGGPPGDLYVVFNVKPHEFFERDGDD 263 (371)
T ss_pred CCCCCCCccEEEEEEEecCCCEEEecCC
Confidence 7655578999999999988776654433
No 53
>KOG0550|consensus
Probab=99.32 E-value=1.2e-12 Score=140.01 Aligned_cols=68 Identities=56% Similarity=0.825 Sum_probs=64.7
Q ss_pred CCccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHhhhhhhhhcCcccccccccc
Q psy11884 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTD-PNASKKFHEVSEAYEVLSDDTKRQEYDT 268 (644)
Q Consensus 201 ~~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~-~~a~e~f~~I~~AYevLsd~~kR~~YD~ 268 (644)
.+.+|||+|||+..+++..|||+|||++|+.||||++.+. .+++.+|+++-+||.+|+||.+|..||.
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 3578999999999999999999999999999999999877 6899999999999999999999999997
No 54
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.7e-12 Score=139.27 Aligned_cols=118 Identities=29% Similarity=0.489 Sum_probs=89.5
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE----------eeccccCCCCceeEEEEEEEEeeCCCCCCCCE
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI----------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQT 489 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~ 489 (644)
.+..+|+.|+|+|.. |.....+|++|+|+|.+. ...|+.|+|+|.+.+
T Consensus 140 ~~~~~C~~C~GsGak-----~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~----------------- 197 (371)
T COG0484 140 TRSVTCSTCHGSGAK-----PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK----------------- 197 (371)
T ss_pred ceeeECCcCCCCCCC-----CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC-----------------
Confidence 457899999999975 344567999999999754 357999999996621
Q ss_pred EEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCC
Q psy11884 490 IRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNR 569 (644)
Q Consensus 490 I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~ 569 (644)
-...-|.+.-.|. ..+.|+|+||+|+..|++|+++|+|-...
T Consensus 198 ------------------------------------~pC~~C~G~G~v~--~~~~i~V~IPaGv~~g~~ir~~g~G~~g~ 239 (371)
T COG0484 198 ------------------------------------DPCGKCKGKGRVK--KKKSISVNIPAGVDDGDRIRLSGEGEAGP 239 (371)
T ss_pred ------------------------------------CCCCCCCCCCeEe--eeeEEEEECCCCCccCCEEEEecCcccCC
Confidence 1222244443332 23578999999999999999999999988
Q ss_pred CCCCCccEEEEEEEECCCCCCHHHHHHH
Q psy11884 570 NSSGYGHHFVHVKIEVPRYPSEKQKDLV 597 (644)
Q Consensus 570 ~~~~rGDL~V~f~V~fP~~Ls~~q~~lL 597 (644)
++...|||||+|.|.-.+.+..+..+|+
T Consensus 240 ~Ggp~GDLyv~i~v~~h~~F~R~g~dL~ 267 (371)
T COG0484 240 NGGPAGDLYVFVHVKPHPIFERDGDDLY 267 (371)
T ss_pred CCCCCccEEEEEEeecCCCeEECCCceE
Confidence 7777999999999998876555444443
No 55
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=4.1e-12 Score=138.83 Aligned_cols=121 Identities=26% Similarity=0.440 Sum_probs=93.3
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+.+.|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|.|.|.+.+
T Consensus 152 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--------------- 211 (386)
T PRK14289 152 KKYVPCSHCHGTGAEG-----NNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK--------------- 211 (386)
T ss_pred EeecccCCCCCCCCCC-----CCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC---------------
Confidence 4568999999999641 12246799999999875 347999999996521
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-..--|++...+..- +.++|.||+|+++|++++|+|+|+|
T Consensus 212 --------------------------------------~~C~~C~G~g~v~~~--~~~~V~Ip~G~~~G~~i~l~g~G~~ 251 (386)
T PRK14289 212 --------------------------------------KKCKKCGGEGIVYGE--EVITVKIPAGVAEGMQLSMNGKGNA 251 (386)
T ss_pred --------------------------------------cCCCCCCCCcEEeee--EEEEEEeCCCCCCCCEEEEeccccC
Confidence 122335555555433 5689999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q~~lL~~l 600 (644)
...+..+|||||+|+|..|+.+..+..+|+..+
T Consensus 252 ~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~ 284 (386)
T PRK14289 252 GKHGGVNGDLLVVIEEEPHPELIRDENDLIYNL 284 (386)
T ss_pred CCCCCCCccEEEEEEEecCCcccccccceeEEe
Confidence 755556899999999999999998887776543
No 56
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.29 E-value=4.4e-12 Score=104.98 Aligned_cols=61 Identities=48% Similarity=1.005 Sum_probs=47.6
Q ss_pred CCCCCcccccCCCccccCCCCCCcceEEeee----cCceeeeecCCCCceeEEE-eeccccCCCCc
Q psy11884 408 CPKCRGTRCELGTKSVRCTYCQGSGYETTTT----GPFIMKTTCRYCSGSGIYI-KFPCQNCDGMG 468 (644)
Q Consensus 408 C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~i-~~~C~~C~G~G 468 (644)
|+.|+|+|++++....+|+.|+|+|+++... +.+.++++|+.|+|+|++| +++|+.|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 8999999999999999999999999875533 4456788999999999999 99999999976
No 57
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=7.7e-12 Score=136.19 Aligned_cols=140 Identities=19% Similarity=0.295 Sum_probs=98.1
Q ss_pred EEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCC
Q psy11884 399 EVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDG 466 (644)
Q Consensus 399 ~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G 466 (644)
++.+.....+.-|.-+ ..-.+...|+.|+|+|... .....+|+.|+|+|.+. ..+|..|.|
T Consensus 122 ~l~vsLee~~~G~~k~--i~~~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 194 (374)
T PRK14293 122 DLKLDFREAIFGGEKE--IRIPHLETCETCRGSGAKP-----GTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNG 194 (374)
T ss_pred EEEeeHHHHhCCceEE--EEeeccccCCCCCCcCCCC-----CCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCc
Confidence 3344444444443322 1234567999999999631 12246899999999754 247999999
Q ss_pred CceeEEEEEEEEeeCCCCCCCCEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEE
Q psy11884 467 MGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLS 546 (644)
Q Consensus 467 ~G~v~e~~~l~V~IPpGv~dG~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~ 546 (644)
.|.+.+ -...-|.+...|.. ...++
T Consensus 195 ~G~~~~-----------------------------------------------------~~C~~C~G~g~v~~--~~~~~ 219 (374)
T PRK14293 195 TGQVIE-----------------------------------------------------DPCDACGGQGVKQV--TKKLK 219 (374)
T ss_pred ceeEec-----------------------------------------------------cCCCCCCCCccccc--ceEEE
Confidence 996521 11222444444432 24579
Q ss_pred EEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q psy11884 547 VEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600 (644)
Q Consensus 547 V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q~~lL~~l 600 (644)
|.||||+++|++++|+|+|++......+|||||+|+|..|+.++.++.+|+.++
T Consensus 220 V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~ 273 (374)
T PRK14293 220 INIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEI 273 (374)
T ss_pred EEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEe
Confidence 999999999999999999998755556899999999999999999988776544
No 58
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=5.8e-12 Score=136.72 Aligned_cols=143 Identities=22% Similarity=0.395 Sum_probs=99.1
Q ss_pred cCceEE--EEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eecccc
Q psy11884 394 RGGYKE--VDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQN 463 (644)
Q Consensus 394 ~G~~k~--i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~ 463 (644)
+|.... +.++....+.-|.-+ -.-.+...|+.|+|+|.. +.....+|+.|+|+|.++ ..+|+.
T Consensus 118 ~g~di~~~l~vtlee~~~G~~~~--i~~~r~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~ 190 (365)
T PRK14285 118 KGQDLTYQIEISLEDAYLGYKNN--INITRNMLCESCLGKKSE-----KGTSPSICNMCNGSGRVMQGGGFFRVTTTCPK 190 (365)
T ss_pred CCCCEEEEEEEEHHHhhCCeEEE--EEeeecccCCCCCCcccC-----CCCCCccCCCccCceeEEecCceeEEeeecCC
Confidence 455444 444444444433321 123457799999999963 122345799999999764 468999
Q ss_pred CCCCceeEEEEEEEEeeCCCCCCCCEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCc
Q psy11884 464 CDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGD 543 (644)
Q Consensus 464 C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~ 543 (644)
|.|.|.+.. -...-|.+...+. ..+
T Consensus 191 C~G~G~~~~-----------------------------------------------------~~C~~C~G~g~v~--~~~ 215 (365)
T PRK14285 191 CYGNGKIIS-----------------------------------------------------NPCKSCKGKGSLK--KKE 215 (365)
T ss_pred CCCcccccC-----------------------------------------------------CCCCCCCCCCEEe--ccE
Confidence 999996521 1122244444443 235
Q ss_pred EEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHH
Q psy11884 544 TLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVR 598 (644)
Q Consensus 544 ~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q~~lL~ 598 (644)
.++|+||||+++|++++++|+|.+..+....|||||+|+|..|+.++.+..+|+.
T Consensus 216 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~ 270 (365)
T PRK14285 216 TIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYA 270 (365)
T ss_pred EEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEE
Confidence 7899999999999999999999987765567999999999999988876655543
No 59
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=1.2e-11 Score=135.47 Aligned_cols=118 Identities=27% Similarity=0.459 Sum_probs=88.4
Q ss_pred CCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eeccccCCCCceeEEEEEEEEeeCCCCCCCCEE
Q psy11884 419 GTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTI 490 (644)
Q Consensus 419 g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I 490 (644)
-.+...|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|+|+|.+..
T Consensus 170 ~~~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------------ 226 (392)
T PRK14279 170 LTSPAPCTTCHGSGARP-----GTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------------ 226 (392)
T ss_pred eeccccCCCCccccccC-----CCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------------
Confidence 34578999999999641 12346899999999875 468999999996521
Q ss_pred EEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCC
Q psy11884 491 RFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRN 570 (644)
Q Consensus 491 ~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~ 570 (644)
-...-|.+...|... +.++|.||||+++|++|+++|+|.+..+
T Consensus 227 -----------------------------------~~C~~C~G~g~v~~~--~~~~V~Ip~G~~~G~~i~~~g~G~~~~~ 269 (392)
T PRK14279 227 -----------------------------------DPCEECKGTGVTTRT--RTINVRIPPGVEDGQRIRLAGQGEAGLR 269 (392)
T ss_pred -----------------------------------CcCCCCCCCeEEEEe--eeeEEEeCCCCCCCcEEEEeCCccCCCC
Confidence 122334555555432 4689999999999999999999998776
Q ss_pred CCCCccEEEEEEEECCCCCCHHHHHH
Q psy11884 571 SSGYGHHFVHVKIEVPRYPSEKQKDL 596 (644)
Q Consensus 571 ~~~rGDL~V~f~V~fP~~Ls~~q~~l 596 (644)
....|||||+|+|.-++.+..+..+|
T Consensus 270 ~~~~GDL~i~i~v~~h~~F~R~G~DL 295 (392)
T PRK14279 270 GAPSGDLYVTVHVRPDKVFGRDGDDL 295 (392)
T ss_pred CCCCCCEEEEEEEecCCcceeecCcE
Confidence 65679999999999877766544333
No 60
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=1e-11 Score=135.09 Aligned_cols=141 Identities=25% Similarity=0.356 Sum_probs=97.8
Q ss_pred cCceEEE--EeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eecccc
Q psy11884 394 RGGYKEV--DVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQN 463 (644)
Q Consensus 394 ~G~~k~i--~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~ 463 (644)
+|....+ .++....+.-|.-+ -.-.+.+.|+.|+|+|... .....+|+.|+|+|.+. ..+|+.
T Consensus 116 ~g~di~~~l~vtLee~~~G~~k~--i~~~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~ 188 (373)
T PRK14301 116 AGSDLRYNLTVSFRQAAKGDEVT--LRIPKNVTCDDCGGSGAAP-----GTSPETCRHCGGSGQVRQSQGFFQIAVPCPV 188 (373)
T ss_pred CCCCEEEEEeccHHHHhCCceEE--EEeeecccCCCCCCcccCC-----CCCCcccCCccCeeEEEEEeeeEEEEEeCCC
Confidence 4554443 34444454444322 1234567999999999631 12245899999999864 468999
Q ss_pred CCCCceeEEEEEEEEeeCCCCCCCCEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCc
Q psy11884 464 CDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGD 543 (644)
Q Consensus 464 C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~ 543 (644)
|.|.|.+.. -...-|.+...+.. .+
T Consensus 189 C~G~G~~~~-----------------------------------------------------~~C~~C~G~g~v~~--~~ 213 (373)
T PRK14301 189 CRGEGRVIT-----------------------------------------------------HPCPKCKGSGIVQQ--TR 213 (373)
T ss_pred CCceeeecC-----------------------------------------------------CCCCCCCCCceecc--ce
Confidence 999996521 12233444444432 25
Q ss_pred EEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHH
Q psy11884 544 TLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDL 596 (644)
Q Consensus 544 ~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q~~l 596 (644)
.++|.||+|+++|++++|+|+|++..++...|||||+|.|..|+.+..+..+|
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL 266 (373)
T PRK14301 214 ELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDL 266 (373)
T ss_pred EEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcE
Confidence 68999999999999999999999876555689999999999999877655443
No 61
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.23 E-value=1e-11 Score=121.27 Aligned_cols=64 Identities=27% Similarity=0.539 Sum_probs=57.4
Q ss_pred ChhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHhhhhhhhhcCcccccccccc
Q psy11884 205 DYYQILGISKN--SSAKEIKKAYYELAKKYHPDTNKTDP-----NASKKFHEVSEAYEVLSDDTKRQEYDT 268 (644)
Q Consensus 205 d~Y~vLGv~~~--as~~eIKkaYRkLa~~~HPDk~~~~~-----~a~e~f~~I~~AYevLsd~~kR~~YD~ 268 (644)
|||++|||++. ++..+|+++||+|++++|||+....+ .|.+.|+.||+||++|+||.+|+.|+.
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 89999999995 68899999999999999999965432 267899999999999999999999984
No 62
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=1.8e-11 Score=133.26 Aligned_cols=138 Identities=25% Similarity=0.358 Sum_probs=95.6
Q ss_pred cCceEE--EEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eecccc
Q psy11884 394 RGGYKE--VDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQN 463 (644)
Q Consensus 394 ~G~~k~--i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~ 463 (644)
+|.... +.++....+.-|.-+ ..-.+.+.|+.|+|+|... .....+|+.|+|+|.+. ..+|+.
T Consensus 122 ~g~di~~~l~vtLee~~~G~~k~--i~~~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~ 194 (372)
T PRK14286 122 RGSDLRYNLEVSLEDAALGREYK--IEIPRLESCVDCNGSGASK-----GSSPTTCPDCGGSGQIRRTQGFFSVATTCPT 194 (372)
T ss_pred CCCCeeEEEEEEHHHHhCCeeEE--EEeeccccCCCCcCCCcCC-----CCCCccCCCCcCeEEEEEEeceEEEEEeCCC
Confidence 454444 444444554443322 1234578999999999631 12235899999999764 468999
Q ss_pred CCCCceeEEEEEEEEeeCCCCCCCCEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCc
Q psy11884 464 CDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGD 543 (644)
Q Consensus 464 C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~ 543 (644)
|.|.|.+.. -...-|.+...+.. .+
T Consensus 195 C~G~G~~~~-----------------------------------------------------~~C~~C~G~g~~~~--~~ 219 (372)
T PRK14286 195 CRGKGTVIS-----------------------------------------------------NPCKTCGGQGLQEK--RR 219 (372)
T ss_pred CCceeeEec-----------------------------------------------------ccCCCCCCCcEEec--ce
Confidence 999996521 12333555555443 25
Q ss_pred EEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 544 TLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 544 ~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
.++|.||||+.+|++++|+|+|++..+...+|||||+|+|.-.+.+..+.
T Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G 269 (372)
T PRK14286 220 TINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQG 269 (372)
T ss_pred EEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEec
Confidence 68999999999999999999999987665689999999999777655443
No 63
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=1.6e-11 Score=133.99 Aligned_cols=113 Identities=22% Similarity=0.459 Sum_probs=84.6
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|.. +.....+|+.|+|+|.+. ..+|+.|.|.|.+..
T Consensus 146 ~r~~~C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--------------- 205 (380)
T PRK14297 146 TRNENCETCNGTGAK-----PGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE--------------- 205 (380)
T ss_pred eeeccCCCccccccc-----CCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC---------------
Confidence 456799999999974 223356899999999763 468999999996521
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-.+.-|.+...++ ..+.++|.||||+.+|++|+++|+|++
T Consensus 206 --------------------------------------~~C~~C~G~g~v~--~~~~i~V~Ip~G~~~G~~I~l~g~G~~ 245 (380)
T PRK14297 206 --------------------------------------DPCNKCHGKGKVR--KNRKIKVNVPAGVDTGNVIPLRGQGEH 245 (380)
T ss_pred --------------------------------------CCCCCCCCCeEEE--eEeEEEEEeCCCCCCCcEEEEecCccC
Confidence 0122233333333 235689999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEK 592 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~ 592 (644)
.......|||||+|+|..++.+..+
T Consensus 246 ~~~~~~~GDL~v~v~v~~h~~f~R~ 270 (380)
T PRK14297 246 GKNGGPTGDLYINIRVAPHKTFKRK 270 (380)
T ss_pred CCCCCCCccEEEEEEEcCCCCEEEe
Confidence 6555568999999999999876533
No 64
>KOG0722|consensus
Probab=99.20 E-value=7e-12 Score=126.25 Aligned_cols=67 Identities=37% Similarity=0.731 Sum_probs=62.8
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWG 270 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G 270 (644)
..|.|+||||+++++..||.+|||+||++||||++.+ +++.+.|..|..||++|.|.+.|..||-+-
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 4799999999999999999999999999999999986 777899999999999999999999999643
No 65
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=2.3e-11 Score=132.59 Aligned_cols=114 Identities=25% Similarity=0.470 Sum_probs=85.2
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|.|.|.+..
T Consensus 141 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--------------- 200 (376)
T PRK14280 141 PKEETCDTCHGSGAKP-----GTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK--------------- 200 (376)
T ss_pred eeeccCCCCCCcccCC-----CCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec---------------
Confidence 4567999999999631 12346799999999753 357999999996521
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-..--|.+...+.. .+.++|.||+|+.+|++++|+|+|++
T Consensus 201 --------------------------------------~~C~~C~G~g~v~~--~~~i~V~Ip~G~~~G~~i~l~G~G~~ 240 (376)
T PRK14280 201 --------------------------------------EKCPTCHGKGKVRK--RKKINVKIPAGVDNGQQIRVSGEGEP 240 (376)
T ss_pred --------------------------------------CCCCCCCCceEEEE--EEEEEEEeCCCCcCCcEEEEcccccC
Confidence 11223444544432 35789999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
..+....|||||+|+|.-.+.+..+.
T Consensus 241 ~~~~~~~GDL~v~i~v~~h~~F~R~G 266 (376)
T PRK14280 241 GVNGGPAGDLYVVFRVRPHEFFERDG 266 (376)
T ss_pred CCCCCCCcCEEEEEEEecCCCeEEec
Confidence 76656789999999999877655433
No 66
>KOG0720|consensus
Probab=99.20 E-value=8.7e-12 Score=134.63 Aligned_cols=66 Identities=38% Similarity=0.619 Sum_probs=63.6
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccc
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDT 268 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~ 268 (644)
+.+|+|.+|||++++++++|||.||++|...|||||. .|.|+|.|+.|+.||++|+|+.+|..||.
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~ 298 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDL 298 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 4789999999999999999999999999999999998 58999999999999999999999999996
No 67
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=2.6e-11 Score=132.28 Aligned_cols=116 Identities=26% Similarity=0.488 Sum_probs=86.4
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|.|.|.+.+
T Consensus 144 ~~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--------------- 203 (380)
T PRK14276 144 NREATCHTCNGSGAKP-----GTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK--------------- 203 (380)
T ss_pred eccccCCCCcCcccCC-----CCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc---------------
Confidence 4567999999999631 22346899999999764 357999999996621
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-...-|.+...+. ..+.++|.||+|+.+|++++|+|+|++
T Consensus 204 --------------------------------------~~C~~C~G~g~~~--~~~~l~V~Ip~G~~~G~~i~l~G~G~~ 243 (380)
T PRK14276 204 --------------------------------------EPCQTCHGTGHEK--QAHTVSVKIPAGVETGQQIRLQGQGEA 243 (380)
T ss_pred --------------------------------------CCCCCCCCceEEE--EEEEEEEEeCCCccCCcEEEEeccccC
Confidence 1122344444443 235689999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQKD 595 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q~~ 595 (644)
..+....|||||+|+|.-++.+..+..+
T Consensus 244 ~~~~~~~GDL~v~i~v~~h~~F~R~G~D 271 (380)
T PRK14276 244 GFNGGPYGDLYVVFRVEPSKKFERDGST 271 (380)
T ss_pred CCCCCCCcCEEEEEEEEECcceeeecce
Confidence 8665568999999999988776654433
No 68
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=2.8e-11 Score=131.90 Aligned_cols=114 Identities=22% Similarity=0.462 Sum_probs=84.6
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|.|.+..
T Consensus 139 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--------------- 198 (377)
T PRK14298 139 PRAERCSTCSGTGAKP-----GTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE--------------- 198 (377)
T ss_pred EeeccCCCCCCCcccC-----CCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC---------------
Confidence 4567999999999641 22346799999999764 357999999996521
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-..--|.+...+.. .+.++|.||||+.+|++|+++|+|++
T Consensus 199 --------------------------------------~~C~~C~G~g~v~~--~~~l~V~IppG~~~G~~i~~~g~G~~ 238 (377)
T PRK14298 199 --------------------------------------SPCPVCSGTGKVRK--TRKITVNVPAGADSGLRLKLSGEGEA 238 (377)
T ss_pred --------------------------------------CCCCCCCCccEEEE--EEEEEecCCCCCCCCCEEEEecccCC
Confidence 11223455555542 35789999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
.......|||||+|.|.-.+.+..+.
T Consensus 239 ~~~~~~~GDL~i~i~v~~h~~F~R~G 264 (377)
T PRK14298 239 GSPGAPSGDLYIVLHVKEHDYFERVG 264 (377)
T ss_pred CCCCCCCcCEEEEEEEecCCCeEEEc
Confidence 65555689999999999766655433
No 69
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.18 E-value=2.1e-11 Score=118.59 Aligned_cols=65 Identities=35% Similarity=0.611 Sum_probs=57.1
Q ss_pred cChhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHhhhhhhhhcCcccccccccc
Q psy11884 204 KDYYQILGISKN--SSAKEIKKAYYELAKKYHPDTNKTDPN---ASKKFHEVSEAYEVLSDDTKRQEYDT 268 (644)
Q Consensus 204 ~d~Y~vLGv~~~--as~~eIKkaYRkLa~~~HPDk~~~~~~---a~e~f~~I~~AYevLsd~~kR~~YD~ 268 (644)
.|||++|||++. ++..+|+++||+|++++|||+.....+ +.+.+..||+||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 489999999996 789999999999999999999864322 44568899999999999999999985
No 70
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=8.3e-11 Score=128.05 Aligned_cols=112 Identities=22% Similarity=0.377 Sum_probs=83.4
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|.|.+..
T Consensus 147 ~~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~--------------- 206 (372)
T PRK14296 147 DLLTNCSKCFGSGAES-----NSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK--------------- 206 (372)
T ss_pred eeeeccCCCCCCccCC-----CCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec---------------
Confidence 4567999999999641 12246799999999865 248999999996621
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-..--|.+...+.. .+.++|+||+|+++|++|+|+|+|.+
T Consensus 207 --------------------------------------~~C~~C~G~g~v~~--~~~~~V~Ip~G~~~G~~i~~~g~G~~ 246 (372)
T PRK14296 207 --------------------------------------NKCKNCKGKGKYLE--RKKIEVNIPKGIRPNQQIKLSQKGHA 246 (372)
T ss_pred --------------------------------------ccccCCCCceEEEE--EEEEEEEECCCCCCCCEEEEeccccC
Confidence 01222334443332 25689999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEECCCCCCH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSE 591 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~ 591 (644)
...+...|||||+|+|.-.+.+..
T Consensus 247 ~~~~~~~GDL~v~v~v~~h~~F~R 270 (372)
T PRK14296 247 SLNNGVNGDLIIDIYLKESKVFEI 270 (372)
T ss_pred CCCCCCCccEEEEEEEeCCCCEEE
Confidence 755556899999999998776665
No 71
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=3.8e-11 Score=130.54 Aligned_cols=114 Identities=23% Similarity=0.357 Sum_probs=85.1
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|.|.+..
T Consensus 150 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--------------- 209 (369)
T PRK14282 150 DRYETCPHCGGTGVEP-----GSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG--------------- 209 (369)
T ss_pred eecccCCCCCccCCCC-----CCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC---------------
Confidence 4567999999999631 12346899999999865 347999999996521
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-...-|.+...+.. .++|+|.||||+.+|++|+++|+|.+
T Consensus 210 --------------------------------------~~C~~C~G~g~v~~--~~~l~V~Ip~G~~~G~~i~~~g~G~~ 249 (369)
T PRK14282 210 --------------------------------------EYCHECGGSGRIRR--RVRTTVKIPAGVEDGTVLRITGGGNA 249 (369)
T ss_pred --------------------------------------CCCCCCCCceeEEE--EEEEEEEeCCCCCCCCEEEEecccCC
Confidence 12333455555543 25689999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
.......|||||+|.|.-++.+..+.
T Consensus 250 ~~~~~~~GDl~i~i~v~~h~~F~r~G 275 (369)
T PRK14282 250 GYYGGPYGDLYVIVRVRPDPRFKRSG 275 (369)
T ss_pred CCCCCCCCCEEEEEEEecCCcEEEec
Confidence 66555689999999999877655433
No 72
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=3.3e-11 Score=117.84 Aligned_cols=67 Identities=22% Similarity=0.408 Sum_probs=59.8
Q ss_pred CccChhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHhhhhhhhhcCcccccccccc
Q psy11884 202 KRKDYYQILGISKN--SSAKEIKKAYYELAKKYHPDTNKTDPN-----ASKKFHEVSEAYEVLSDDTKRQEYDT 268 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~--as~~eIKkaYRkLa~~~HPDk~~~~~~-----a~e~f~~I~~AYevLsd~~kR~~YD~ 268 (644)
...|||++|||++. .+..+|+++||+|++++|||+..+.+. +.+.+..||+||++|+||.+|+.|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 45799999999997 668999999999999999999765432 67789999999999999999999995
No 73
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=5.2e-11 Score=129.60 Aligned_cols=120 Identities=25% Similarity=0.440 Sum_probs=88.2
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|... ......+|+.|+|+|.+. ..+|..|.|.|...+
T Consensus 137 ~r~~~C~~C~G~G~~~----~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--------------- 197 (371)
T PRK14292 137 DRLTECEHCHGSRTEP----GGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT--------------- 197 (371)
T ss_pred EeeecCCCCcccccCC----CCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC---------------
Confidence 3467899999999631 111246799999999765 247999999986411
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
...--|.+...+ .+.+.++|.||+|+.+|++++++|+|.+
T Consensus 198 --------------------------------------~~C~~C~G~g~v--~~~~~~~V~Ip~G~~~G~~i~~~G~G~~ 237 (371)
T PRK14292 198 --------------------------------------DPCTVCRGRGRT--LKAETVKVKLPRGIDEGYRIRVAGMGNE 237 (371)
T ss_pred --------------------------------------CCCCCCCCceEE--eecceEEEEECCCCCCCcEEEEecCcCC
Confidence 112223333333 2456789999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHHHHHHHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q~~lL~~l 600 (644)
..+. .|||||+|+|..|+.++.+..+|+..+
T Consensus 238 ~~~~--~GDL~v~i~v~~h~~f~r~g~dL~~~~ 268 (371)
T PRK14292 238 GPGG--NGDLYVHIEMEPHPELRREQEHLIYEA 268 (371)
T ss_pred CCCC--CCCEEEEEEEecCCccccchhceeEEe
Confidence 6543 399999999999999998887776544
No 74
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.16 E-value=3.5e-11 Score=109.80 Aligned_cols=54 Identities=30% Similarity=0.463 Sum_probs=48.5
Q ss_pred CCccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcC
Q psy11884 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLS 258 (644)
Q Consensus 201 ~~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLs 258 (644)
+...++|++|||++++|.+|||++||+|++++|||++++ .+.|++|++||++|.
T Consensus 62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 345799999999999999999999999999999998643 478899999999985
No 75
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.16 E-value=3.8e-11 Score=129.84 Aligned_cols=115 Identities=22% Similarity=0.447 Sum_probs=85.5
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|.|.+..
T Consensus 141 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--------------- 200 (354)
T TIGR02349 141 PRKESCETCHGTGAKP-----GTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK--------------- 200 (354)
T ss_pred ecCCcCCCCCCCCCCC-----CCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC---------------
Confidence 4567999999999631 12246899999999765 247999999996521
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-.+.-|.+...+.. .+.++|.||+|+.+|++++++|+|++
T Consensus 201 --------------------------------------~~C~~C~G~g~v~~--~~~l~V~Ip~G~~~G~~i~~~g~G~~ 240 (354)
T TIGR02349 201 --------------------------------------EPCSTCKGKGRVKE--RKTITVKIPAGVDTGQRLRVSGKGNA 240 (354)
T ss_pred --------------------------------------CCCCCCCCCcEecc--cceEEEEECCCCCCCCEEEEecCccC
Confidence 01223444444432 35689999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQK 594 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q~ 594 (644)
...+...|||||+|+|..++.+..+..
T Consensus 241 ~~~~~~~GDl~v~i~v~~h~~f~r~g~ 267 (354)
T TIGR02349 241 GENGGPNGDLYVVIRVKPHKIFERDGN 267 (354)
T ss_pred CCCCCCCCCEEEEEEEecCcceEEecC
Confidence 655556899999999999887665443
No 76
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=3.9e-11 Score=131.31 Aligned_cols=114 Identities=24% Similarity=0.426 Sum_probs=84.7
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eeccccCCCCceeEEEEEEEEeeCCCCCCCCEEE
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIR 491 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~ 491 (644)
.+...|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|+|.+.+
T Consensus 164 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------------- 219 (389)
T PRK14295 164 TSQAPCPACSGTGAKN-----GTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------------- 219 (389)
T ss_pred eccccCCCCcccccCC-----CCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec-------------------
Confidence 4567999999999641 22346899999999854 468999999996521
Q ss_pred EecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCC
Q psy11884 492 FPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNS 571 (644)
Q Consensus 492 ~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~ 571 (644)
-...-|.+...+.. .+.++|.||+|+++|++++|+|+|++..++
T Consensus 220 ----------------------------------~~C~~C~G~g~~~~--~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~ 263 (389)
T PRK14295 220 ----------------------------------DPCLVCKGSGRAKS--SRTMQVRIPAGVSDGQRIRLRGKGAPGERG 263 (389)
T ss_pred ----------------------------------cCCCCCCCCceEee--eeEEEEEeCCCCCCCCEEEEcccccCCCCC
Confidence 11222444444432 356899999999999999999999987655
Q ss_pred CCCccEEEEEEEECCCCCCHHH
Q psy11884 572 SGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 572 ~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
...|||||+|.|.-.+.+..+.
T Consensus 264 ~~~GDL~v~i~v~~h~~F~R~G 285 (389)
T PRK14295 264 GPAGDLYVVVHVDPHPVFGRSG 285 (389)
T ss_pred CCCccEEEEEEEecCCCEEEec
Confidence 5689999999999776655444
No 77
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.15 E-value=4.5e-11 Score=117.27 Aligned_cols=66 Identities=24% Similarity=0.416 Sum_probs=57.8
Q ss_pred ccChhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHhhhhhhhhcCcccccccccc
Q psy11884 203 RKDYYQILGISKN--SSAKEIKKAYYELAKKYHPDTNKTDPN-----ASKKFHEVSEAYEVLSDDTKRQEYDT 268 (644)
Q Consensus 203 ~~d~Y~vLGv~~~--as~~eIKkaYRkLa~~~HPDk~~~~~~-----a~e~f~~I~~AYevLsd~~kR~~YD~ 268 (644)
..|||++|||++. ++..+|+++||+|++++|||+....+. +.+.++.||+||++|+||.+|+.|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3699999999995 689999999999999999999865544 34456899999999999999999994
No 78
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=4.9e-11 Score=130.08 Aligned_cols=114 Identities=23% Similarity=0.397 Sum_probs=84.7
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|+|.|.+..
T Consensus 137 ~~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--------------- 196 (378)
T PRK14278 137 DTAVLCDRCHGKGTAG-----DSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP--------------- 196 (378)
T ss_pred EeeccCCCCcCccCCC-----CCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC---------------
Confidence 4567999999999631 22346899999999754 357999999996521
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-..--|.+...+.. .+.++|.||||+.+|++|+++|+|.+
T Consensus 197 --------------------------------------~~C~~C~G~g~v~~--~~~~~V~Ip~G~~~G~~i~~~g~G~~ 236 (378)
T PRK14278 197 --------------------------------------DPCHECAGDGRVRA--RREITVKIPAGVGDGMRIRLAAQGEV 236 (378)
T ss_pred --------------------------------------CCCCCCCCceeEec--ceEEEEEECCCCCCCcEEEEccCcCC
Confidence 11223444444432 35789999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
..+....|||||+|+|.-.+.+..+.
T Consensus 237 ~~~~~~~GDL~v~i~~~~h~~F~R~G 262 (378)
T PRK14278 237 GPGGGPAGDLYVEVHEQPHDVFVRDG 262 (378)
T ss_pred CCCCCCCCCEEEEEEECcCCCEEEcC
Confidence 76655679999999999776655433
No 79
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=4.7e-11 Score=130.61 Aligned_cols=113 Identities=22% Similarity=0.391 Sum_probs=83.5
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+.+.|+.|+|+|... .....+|+.|+|.|.++ ..+|+.|.|.|.+..
T Consensus 153 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~--------------- 212 (386)
T PRK14277 153 ERFEKCDVCKGSGAKP-----GSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT--------------- 212 (386)
T ss_pred EeeccCCCCCCCCcCC-----CCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc---------------
Confidence 4577999999999631 12246899999999764 247999999996521
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-..--|.+...|. ..+.++|.||+|+++|++++|+|+|+|
T Consensus 213 --------------------------------------~~C~~C~G~g~v~--~~~~l~V~Ip~G~~~G~~i~~~g~G~~ 252 (386)
T PRK14277 213 --------------------------------------DPCNKCGGTGRIR--RRRKIKVNIPAGIDDGQMITLRGEGEP 252 (386)
T ss_pred --------------------------------------CCCCCCCCCcEEe--eeeEEEEecCCCccCCcEEEEcccccc
Confidence 1122344444443 235689999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEK 592 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~ 592 (644)
...+...|||||+|+|.-++.+..+
T Consensus 253 ~~~~~~~GDL~v~i~v~~h~~F~R~ 277 (386)
T PRK14277 253 GIKGGPNGDLYIVIKVKPHPLFKRE 277 (386)
T ss_pred CCCCCCCccEEEEEEEecCCCeEEe
Confidence 6555568999999999977665543
No 80
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=6.4e-11 Score=128.89 Aligned_cols=111 Identities=26% Similarity=0.444 Sum_probs=83.3
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eeccccCCCCceeEEEEEEEEeeCCCCCCCCEEE
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIR 491 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~ 491 (644)
.+...|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|.|.+..
T Consensus 140 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------------- 195 (371)
T PRK10767 140 PTLVTCDTCHGSGAKP-----GTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------------- 195 (371)
T ss_pred eecccCCCCCCcccCC-----CCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC-------------------
Confidence 4577999999999641 12235799999999864 468999999996521
Q ss_pred EecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCC
Q psy11884 492 FPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNS 571 (644)
Q Consensus 492 ~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~ 571 (644)
-...-|.+...+.. .+.++|.||||+++|++++++|+|++..+.
T Consensus 196 ----------------------------------~~C~~C~G~g~v~~--~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 239 (371)
T PRK10767 196 ----------------------------------DPCKKCHGQGRVEK--EKTLSVKIPAGVDTGDRIRLSGEGEAGERG 239 (371)
T ss_pred ----------------------------------CCCCCCCCCceEee--eeeEEEecCCCCCCCcEEEEecCccCCCCC
Confidence 12333555555532 356899999999999999999999996555
Q ss_pred CCCccEEEEEEEECCCCCC
Q psy11884 572 SGYGHHFVHVKIEVPRYPS 590 (644)
Q Consensus 572 ~~rGDL~V~f~V~fP~~Ls 590 (644)
...|||||+|+|.-.+.+.
T Consensus 240 ~~~GDL~v~i~v~~h~~F~ 258 (371)
T PRK10767 240 GPAGDLYVQIHVKEHPIFE 258 (371)
T ss_pred CCCcCEEEEEEEeeCCCEE
Confidence 5789999999998766544
No 81
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=5.1e-11 Score=129.99 Aligned_cols=131 Identities=20% Similarity=0.362 Sum_probs=91.3
Q ss_pred EEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCC
Q psy11884 400 VDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGM 467 (644)
Q Consensus 400 i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~ 467 (644)
+.++......-|.-+- .-.+...|+.|+|+|... .....+|+.|+|+|.+. ..+|+.|.|.
T Consensus 126 l~vsLed~~~G~~~~i--~~~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 198 (378)
T PRK14283 126 VEITLEEAASGVEKDI--KVRHTKKCPVCNGSRAEP-----GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGE 198 (378)
T ss_pred eeeeHHHHhCCcceEE--EeeeeccCCCCCccccCC-----CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcc
Confidence 3344444544443221 124567999999999531 22345799999999864 3579999999
Q ss_pred ceeEEEEEEEEeeCCCCCCCCEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEE
Q psy11884 468 GQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSV 547 (644)
Q Consensus 468 G~v~e~~~l~V~IPpGv~dG~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V 547 (644)
|...+ -...-|.+...+.. .+.++|
T Consensus 199 G~~~~-----------------------------------------------------~~C~~C~G~g~v~~--~~~l~V 223 (378)
T PRK14283 199 GKIVE-----------------------------------------------------KPCSNCHGKGVVRE--TKTISV 223 (378)
T ss_pred ceecC-----------------------------------------------------CCCCCCCCceeecc--ceeEEE
Confidence 96521 11223444444432 356899
Q ss_pred EeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHH
Q psy11884 548 EIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEK 592 (644)
Q Consensus 548 ~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~ 592 (644)
.||||+++|++++++|+|+|......+|||||+|+|..|+.+..+
T Consensus 224 ~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~ 268 (378)
T PRK14283 224 KIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRRE 268 (378)
T ss_pred EECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEe
Confidence 999999999999999999997655678999999999998875543
No 82
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=6.2e-11 Score=129.85 Aligned_cols=137 Identities=22% Similarity=0.374 Sum_probs=94.0
Q ss_pred cCceEEE--EeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eecccc
Q psy11884 394 RGGYKEV--DVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQN 463 (644)
Q Consensus 394 ~G~~k~i--~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~ 463 (644)
+|....+ .++......-|.-+- .-.+...|+.|+|+|... .....+|+.|+|+|.++ ..+|+.
T Consensus 130 ~g~d~~~~l~vslee~~~G~~~~i--~~~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~ 202 (391)
T PRK14284 130 QGASKKVHITLSFEEAAKGVEKEL--LVSGYKSCDACSGSGANS-----SQGIKVCDRCKGSGQVVQSRGFFSMASTCPE 202 (391)
T ss_pred CCCCeEEEEEEEHHHHhCCeeEEE--EEeeeccCCCCcccccCC-----CCCCeecCccCCeeEEEEEeceEEEEEECCC
Confidence 3444344 444444444443221 123567999999999631 22346899999999864 468999
Q ss_pred CCCCceeEEEEEEEEeeCCCCCCCCEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCc
Q psy11884 464 CDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGD 543 (644)
Q Consensus 464 C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~ 543 (644)
|.|.|.+.. -..--|.+...|. ..+
T Consensus 203 C~G~G~~~~-----------------------------------------------------~~C~~C~G~g~v~--~~~ 227 (391)
T PRK14284 203 CGGEGRVIT-----------------------------------------------------DPCSVCRGQGRIK--DKR 227 (391)
T ss_pred CCCCCcccC-----------------------------------------------------CcCCCCCCcceec--ceE
Confidence 999996521 0122344444443 235
Q ss_pred EEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHH
Q psy11884 544 TLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEK 592 (644)
Q Consensus 544 ~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~ 592 (644)
.|+|.||||+.+|++|+++|+|-...++...|||||+|+|.-++.+..+
T Consensus 228 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~ 276 (391)
T PRK14284 228 SVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERR 276 (391)
T ss_pred EEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceee
Confidence 7899999999999999999999987665568999999999987765543
No 83
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=8.6e-11 Score=127.69 Aligned_cols=138 Identities=22% Similarity=0.365 Sum_probs=93.8
Q ss_pred cCceEE--EEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eecccc
Q psy11884 394 RGGYKE--VDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQN 463 (644)
Q Consensus 394 ~G~~k~--i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~ 463 (644)
+|.... +.++....+.-|.-+- .-.+...|+.|+|+|... .....+|+.|+|.|.++ ..+|+.
T Consensus 116 ~g~d~~~~l~lslee~~~G~~~~i--~~~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~ 188 (366)
T PRK14294 116 AGADLRYDLTLPFLEAAFGTEKEI--RIQKLETCEECHGSGCEP-----GTSPTTCPQCGGSGQVTQSQGFFSIRTTCPR 188 (366)
T ss_pred CCCCceEEEEeeHHHhcCCeEEEE--EeeecccCCCCCCccccC-----CCCcccCCCcCCeEEEEEEeeeEEEEeeCCC
Confidence 454433 4444444544433221 224567999999999631 12246899999999865 468999
Q ss_pred CCCCceeEEEEEEEEeeCCCCCCCCEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCc
Q psy11884 464 CDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGD 543 (644)
Q Consensus 464 C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~ 543 (644)
|.|.|.+.. -...-|.+...+.. .+
T Consensus 189 C~G~G~~~~-----------------------------------------------------~~C~~C~G~g~v~~--~~ 213 (366)
T PRK14294 189 CRGMGKVIV-----------------------------------------------------SPCKTCHGQGRVRV--SK 213 (366)
T ss_pred CCCcCeecC-----------------------------------------------------cCCCCCCCceEeec--ce
Confidence 999996521 12223444444432 25
Q ss_pred EEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 544 TLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 544 ~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
.++|.||||+++|++|+++|+|.+...+...|||||+|+|.-.+.+..+.
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G 263 (366)
T PRK14294 214 TVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDG 263 (366)
T ss_pred eEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecC
Confidence 68999999999999999999999876555689999999999655555443
No 84
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.4e-10 Score=126.20 Aligned_cols=137 Identities=26% Similarity=0.360 Sum_probs=93.4
Q ss_pred cCceEEEE--eeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eecccc
Q psy11884 394 RGGYKEVD--VNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQN 463 (644)
Q Consensus 394 ~G~~k~i~--v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~ 463 (644)
+|....+. ++....+.-|.-+ ..-.+.+.|+.|+|+|... .....+|+.|+|+|.++ ..+|+.
T Consensus 117 ~g~di~~~l~~sLee~~~G~~k~--i~~~r~~~C~~C~G~g~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~ 189 (372)
T PRK14300 117 RGSDLKYNLTINLEEAFHGIEKN--ISFSSEVKCDTCHGSGSEK-----GETVTTCDACSGVGATRMQQGFFTIEQACHK 189 (372)
T ss_pred CCCCeeEEEEEEHHHHhCCceEE--EEeeeccccCCCCCcccCC-----CCCCccCCCccCeEEEEEeeceEEEEEeCCC
Confidence 45443333 4444455444322 1234568999999999631 12246899999999864 468999
Q ss_pred CCCCceeEEEEEEEEeeCCCCCCCCEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCc
Q psy11884 464 CDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGD 543 (644)
Q Consensus 464 C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~ 543 (644)
|.|.|.+.. -..--|.+...+.. .+
T Consensus 190 C~G~G~~~~-----------------------------------------------------~~C~~C~G~g~v~~--~~ 214 (372)
T PRK14300 190 CQGNGQIIK-----------------------------------------------------NPCKKCHGMGRYHK--QR 214 (372)
T ss_pred CCccceEeC-----------------------------------------------------CCCCCCCCceEEEe--eE
Confidence 999996521 11223444444432 35
Q ss_pred EEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHH
Q psy11884 544 TLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEK 592 (644)
Q Consensus 544 ~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~ 592 (644)
.++|.||+|+++|++|+++|+|.+...+...|||||+|.|.-.+.+..+
T Consensus 215 ~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~ 263 (372)
T PRK14300 215 NLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVD 263 (372)
T ss_pred EEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEe
Confidence 6899999999999999999999986555568999999999876665533
No 85
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.2e-10 Score=126.70 Aligned_cols=111 Identities=18% Similarity=0.398 Sum_probs=83.4
Q ss_pred ccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEE
Q psy11884 421 KSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF 492 (644)
Q Consensus 421 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~ 492 (644)
+...|+.|+|+|... + ...+|+.|+|+|.+. ..+|+.|.|.|.+..
T Consensus 139 r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------- 192 (369)
T PRK14288 139 YQSVCESCDGTGAKD---K---ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK-------------------- 192 (369)
T ss_pred eeccCCCCCCcccCC---C---CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc--------------------
Confidence 466999999999642 1 246799999999764 468999999996521
Q ss_pred ecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCC
Q psy11884 493 PIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSS 572 (644)
Q Consensus 493 ~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~ 572 (644)
-..--|.+...|..- +.|+|.||+|+++|++|+++|+|.+..+ .
T Consensus 193 ---------------------------------~~C~~C~G~g~v~~~--~~l~V~IP~G~~~G~~i~l~g~G~~~~~-~ 236 (369)
T PRK14288 193 ---------------------------------TPCQACKGKTYILKD--EEIDAIIPEGIDDQNRMVLKNKGNEYEK-G 236 (369)
T ss_pred ---------------------------------ccCccCCCcceEEEE--EEEEEecCCCCCCCCEEEEccCccCCCC-C
Confidence 112224444444332 4689999999999999999999998654 4
Q ss_pred CCccEEEEEEEECCCCCCHHH
Q psy11884 573 GYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 573 ~rGDL~V~f~V~fP~~Ls~~q 593 (644)
..|||||+|.|.-++.+..+.
T Consensus 237 ~~GDL~v~i~v~~h~~f~R~G 257 (369)
T PRK14288 237 KRGDLYLEARVKEDEHFKREG 257 (369)
T ss_pred CCCCEEEEEEEEECCCcEEeC
Confidence 689999999999988766544
No 86
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=1.1e-10 Score=128.05 Aligned_cols=113 Identities=23% Similarity=0.377 Sum_probs=84.0
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|... + ...+|+.|+|.|.+. ..+|+.|.|.|.+..
T Consensus 161 ~r~~~C~~C~G~G~~~---~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--------------- 219 (397)
T PRK14281 161 KKQVPCKECNGTGSKT---G---ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK--------------- 219 (397)
T ss_pred EeeecCCCCCCcccCC---C---CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC---------------
Confidence 4567999999999642 1 246899999999764 347999999996521
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-..--|.+...+.. .++++|+||+|+++|++|+++|+|.+
T Consensus 220 --------------------------------------~~C~~C~G~g~v~~--~~~~~V~Ip~G~~~G~~i~~~g~G~~ 259 (397)
T PRK14281 220 --------------------------------------DRCPACYGEGIKQG--EVTVKVTVPAGVQDGNYLTLRGQGNA 259 (397)
T ss_pred --------------------------------------CCCCCCCCCccEec--ceEEEEecCCCCCCCCEEEEeccccc
Confidence 01222444444432 24689999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
..++...|||||+|++.-++.+..+.
T Consensus 260 ~~~~~~~GDL~i~i~~~~h~~F~R~G 285 (397)
T PRK14281 260 GPRGGAPGDLIVVIEEKPHELFVRNG 285 (397)
T ss_pred CCCCCCCCcEEEEEEEcCCCCeEEec
Confidence 76555689999999988777655444
No 87
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=3.3e-10 Score=123.82 Aligned_cols=113 Identities=27% Similarity=0.474 Sum_probs=83.2
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eeccccCCCCceeEEEEEEEEeeCCCCCCCCEEE
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIR 491 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~ 491 (644)
.+...|+.|+|+|... .....+|+.|+|+|.++ ..+|+.|.|.|.+..
T Consensus 154 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------------- 209 (382)
T PRK14291 154 PRYVPCEACGGTGYDP-----GSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLRE------------------- 209 (382)
T ss_pred eeeccCCCCccccCCC-----CCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEcc-------------------
Confidence 4577999999999631 22346799999999864 468999999994310
Q ss_pred EecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCC
Q psy11884 492 FPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNS 571 (644)
Q Consensus 492 ~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~ 571 (644)
...-|.+...+.. .++|+|.||||+.+|++|+++|+|-....+
T Consensus 210 -----------------------------------~C~~C~G~g~v~~--~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g 252 (382)
T PRK14291 210 -----------------------------------PCSKCNGRGLVIK--KETIKVRIPPGVDNGSKLRVPGKGHAGRFG 252 (382)
T ss_pred -----------------------------------CCCCCCCCceEEe--eeEEEEEeCCCCCCCCEEEEecCcCCCCCC
Confidence 1222344444432 256899999999999999999999876545
Q ss_pred CCCccEEEEEEEECCCCCCHHH
Q psy11884 572 SGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 572 ~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
...|||||+|++.-.+.+..+.
T Consensus 253 ~~~GDL~v~i~~~~h~~F~r~G 274 (382)
T PRK14291 253 GPPGDLYIIVKVKPHPLFERRG 274 (382)
T ss_pred CCCccEEEEEEEccCCCeeeec
Confidence 5689999999999777666543
No 88
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.00 E-value=4.4e-10 Score=124.02 Aligned_cols=114 Identities=23% Similarity=0.362 Sum_probs=83.5
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+...|+.|+|+|... ....+|+.|+|+|..+ ..+|+.|+|.|.+...
T Consensus 148 ~r~~~C~~C~G~G~~~------~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~-------------- 207 (421)
T PTZ00037 148 NKDVICANCEGHGGPK------DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE-------------- 207 (421)
T ss_pred eccccccccCCCCCCC------CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc--------------
Confidence 4577999999999521 1346899999999642 4589999999965210
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
.-...-|.+...+.. .+.|+|.||+|+.+|++|+++|+|-.
T Consensus 208 -------------------------------------~~~C~~C~G~g~v~~--~~~l~V~Ip~G~~dG~~I~~~G~Gd~ 248 (421)
T PTZ00037 208 -------------------------------------SKKCKNCSGKGVKKT--RKILEVNIDKGVPNQHKITFHGEADE 248 (421)
T ss_pred -------------------------------------cccCCcCCCcceeee--eeEEEEeeCCCCCCCcEEEEecccCC
Confidence 012233555555543 25689999999999999999999987
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEKQ 593 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~q 593 (644)
..+ ...|||||+|.+.-.+.+..+.
T Consensus 249 ~~~-~~pGDLiv~I~~~ph~~F~R~G 273 (421)
T PTZ00037 249 KPN-EIPGNVVFILNEKPHDTFKREG 273 (421)
T ss_pred CCC-CCCCcEEEEEEecCCCCcEEeC
Confidence 654 4689999999998776655433
No 89
>PHA02624 large T antigen; Provisional
Probab=98.98 E-value=3.8e-10 Score=127.51 Aligned_cols=60 Identities=25% Similarity=0.505 Sum_probs=56.2
Q ss_pred ccChhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccc
Q psy11884 203 RKDYYQILGISKNS--SAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEY 266 (644)
Q Consensus 203 ~~d~Y~vLGv~~~a--s~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~Y 266 (644)
.+++|++|||+++| +.++||+|||+||+++|||++++ +++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 99999999999999999999743 58999999999999999999988
No 90
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=3.3e-09 Score=115.38 Aligned_cols=110 Identities=23% Similarity=0.425 Sum_probs=80.6
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeEEEEEEEEeeCCCCCCC
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG 487 (644)
.+.+.|+.|+|+|... + ...+|+.|+|.|.+. ..+|+.|.|.|.+.+
T Consensus 147 ~r~~~C~~C~G~g~~~---~---~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~--------------- 205 (365)
T PRK14290 147 RRNAMCPDCSGTGAKN---G---KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE--------------- 205 (365)
T ss_pred eecccCCCCccccCCC---C---CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc---------------
Confidence 4567999999999632 1 245899999999753 368999999996521
Q ss_pred CEEEEecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcC
Q psy11884 488 QTIRFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567 (644)
Q Consensus 488 ~~I~~~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P 567 (644)
-..--|.+...+... +.|+|.||||+.+|++|+++|+|-.
T Consensus 206 --------------------------------------~~C~~C~G~g~v~~~--~~~~V~Ip~G~~~G~~i~~~g~G~~ 245 (365)
T PRK14290 206 --------------------------------------EKCPRCNGTGTVVVN--EDISVKIPKGATDNLRLRVKGKGQS 245 (365)
T ss_pred --------------------------------------CCCCCCCCceeEEEe--eEEEEEECCCCCCCcEEEEccccCC
Confidence 011224444444332 4689999999999999999999964
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHH
Q psy11884 568 NRNSSGYGHHFVHVKIEVPRYPSEK 592 (644)
Q Consensus 568 ~~~~~~rGDL~V~f~V~fP~~Ls~~ 592 (644)
.+...|||||+|+|.-.+.+..+
T Consensus 246 --~~~~~GDL~v~v~v~~h~~F~R~ 268 (365)
T PRK14290 246 --YGGRTGDLYVVLRVNNDPNIQRI 268 (365)
T ss_pred --CCCCCCCEEEEEEEcCCCCEEEe
Confidence 34468999999999987765533
No 91
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.87 E-value=8.3e-10 Score=118.81 Aligned_cols=69 Identities=35% Similarity=0.698 Sum_probs=63.6
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----ChHHHHHHHhhhhhhhhcCcccccccccccCC
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKT-----DPNASKKFHEVSEAYEVLSDDTKRQEYDTWGA 271 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~-----~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~ 271 (644)
.-|||||||++.+++..+||++||+|+.++||||.+. ..+.++++++|++||+.|+|...|+.|-.||.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 4599999999999999999999999999999999654 24689999999999999999999999999985
No 92
>KOG1150|consensus
Probab=98.80 E-value=8.8e-09 Score=100.93 Aligned_cols=62 Identities=34% Similarity=0.567 Sum_probs=57.4
Q ss_pred ccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHhhhhhhhhcCcccccc
Q psy11884 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTD-PNASKKFHEVSEAYEVLSDDTKRQ 264 (644)
Q Consensus 203 ~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~-~~a~e~f~~I~~AYevLsd~~kR~ 264 (644)
.-|+|+||.|.|+.+.++||+.||+|+...|||+|+++ +.|...|.-+..||..|-|+..|.
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rk 114 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRK 114 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 45899999999999999999999999999999999988 669999999999999999987543
No 93
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=2e-08 Score=106.03 Aligned_cols=75 Identities=25% Similarity=0.387 Sum_probs=67.4
Q ss_pred ccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCC
Q psy11884 511 YHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPS 590 (644)
Q Consensus 511 F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls 590 (644)
+.|.|+||++++.|+|.||++|+++.| +++|+.++|+||||+.+|++++++|+|++. |||||+|+|.-++.+.
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~ 197 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFR 197 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeE
Confidence 357899999999999999999999998 788988999999999999999999999863 9999999999877655
Q ss_pred HH
Q psy11884 591 EK 592 (644)
Q Consensus 591 ~~ 592 (644)
.+
T Consensus 198 R~ 199 (291)
T PRK14299 198 LE 199 (291)
T ss_pred EE
Confidence 43
No 94
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.62 E-value=6.4e-08 Score=87.98 Aligned_cols=59 Identities=32% Similarity=0.700 Sum_probs=49.1
Q ss_pred eecCCCCCcccccCCCccccCCCCCCcceEEeeecC-ceeeeecCCCCceeEEEeeccccCCCCceeEE
Q psy11884 405 IDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGP-FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQ 472 (644)
Q Consensus 405 ~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~-~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~e 472 (644)
.+.|..|+|+|. .+|+.|+|+|....+.++ +..+++|+.|+|+|+. +|+.|+|+|.+.+
T Consensus 41 ~v~C~~C~GsG~------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 41 TQPCFPCSGTGA------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCCCC------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 568999999997 289999999987665555 4567899999999975 4999999998754
No 95
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.60 E-value=1.3e-07 Score=100.54 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=65.3
Q ss_pred ccCCCeEEEEecCHhHhhcCCEEEE----Eeee--C-------cEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEE
Q psy11884 513 RDQSDIHTEESISISQAILGGTINV----EGIY--G-------DTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFV 579 (644)
Q Consensus 513 R~G~DL~~~~~Isl~eALlG~~~~I----~tLd--G-------~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V 579 (644)
+.|.||++.+.|+|.|++.|+..+| ++++ | +.++|+||+|+++|++++++|+|+|..++..+|||||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v 194 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWL 194 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEE
Confidence 4689999999999999999996555 4343 3 4689999999999999999999999766667899999
Q ss_pred EEEEECCCCCCH
Q psy11884 580 HVKIEVPRYPSE 591 (644)
Q Consensus 580 ~f~V~fP~~Ls~ 591 (644)
+|+|.-.+.+..
T Consensus 195 ~i~v~ph~~f~r 206 (306)
T PRK10266 195 VIHIAPHPLFDI 206 (306)
T ss_pred EEEEcCCCCeEE
Confidence 999994444443
No 96
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.60 E-value=5.3e-08 Score=95.43 Aligned_cols=65 Identities=23% Similarity=0.346 Sum_probs=57.2
Q ss_pred cChhhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHhhhhhhhhcCcccccccccc
Q psy11884 204 KDYYQILGISKN--SSAKEIKKAYYELAKKYHPDTNKTDP-----NASKKFHEVSEAYEVLSDDTKRQEYDT 268 (644)
Q Consensus 204 ~d~Y~vLGv~~~--as~~eIKkaYRkLa~~~HPDk~~~~~-----~a~e~f~~I~~AYevLsd~~kR~~YD~ 268 (644)
.|||++||+++. .+..+++++||+|.+++|||+..... .|.+.-..||+||.+|+||-+|+.|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 589999999995 89999999999999999999965542 256678899999999999999999964
No 97
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.56 E-value=6.6e-08 Score=93.43 Aligned_cols=53 Identities=26% Similarity=0.464 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCC-----hHHHHHHHhhhhhhhhcCcccccccccc
Q psy11884 216 SSAKEIKKAYYELAKKYHPDTNKTD-----PNASKKFHEVSEAYEVLSDDTKRQEYDT 268 (644)
Q Consensus 216 as~~eIKkaYRkLa~~~HPDk~~~~-----~~a~e~f~~I~~AYevLsd~~kR~~YD~ 268 (644)
.+..+|+++||+|++++|||+.... ..+.+.++.||+||++|+||.+|+.|+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 4778999999999999999985432 2377899999999999999999999995
No 98
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.2e-07 Score=93.69 Aligned_cols=71 Identities=35% Similarity=0.520 Sum_probs=61.5
Q ss_pred CCCccChhhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCChHHHHHHHhhhhhhhhcCcccccccccccC
Q psy11884 200 NLKRKDYYQILGISK---NSSAKEIKKAYYELAKKYHPDTN--KTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWG 270 (644)
Q Consensus 200 ~~~~~d~Y~vLGv~~---~as~~eIKkaYRkLa~~~HPDk~--~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G 270 (644)
.|+..|.|.+|||+. -+++.+|.+|.++-+.+||||+. +++-...+.|+.|+.||++|+|+.+|.+||..-
T Consensus 39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 346789999999986 78899999999999999999985 223446789999999999999999999999754
No 99
>KOG0568|consensus
Probab=98.11 E-value=1.3e-06 Score=87.61 Aligned_cols=56 Identities=32% Similarity=0.670 Sum_probs=49.8
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhh-hcC
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYE-VLS 258 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYe-vLs 258 (644)
....+|.+|||..+|+.+|++.||.+||+++|||.... ....++|.+|.+||. ||+
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999998765 345689999999998 775
No 100
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.09 E-value=3.2e-06 Score=83.61 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=45.1
Q ss_pred eeecCCCCceeEEEe--eccccCCCCceeEEEEEEEEeeCCCCCCCCEEEEe
Q psy11884 444 KTTCRYCSGSGIYIK--FPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFP 493 (644)
Q Consensus 444 ~~~C~~C~G~G~~i~--~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~~ 493 (644)
+.+|+.|+|+|++++ .+|+.|+|.|++..++.+.+.+ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 568999999999997 7899999999999999999999 999999999875
No 101
>KOG1789|consensus
Probab=97.93 E-value=9.2e-06 Score=94.93 Aligned_cols=55 Identities=38% Similarity=0.704 Sum_probs=47.2
Q ss_pred CCccChhhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcC
Q psy11884 201 LKRKDYYQILGISKN----SSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLS 258 (644)
Q Consensus 201 ~~~~d~Y~vLGv~~~----as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLs 258 (644)
+...+.|+||.|+-+ -..+.||++|++||.+|||||| |+..++|.++|+|||.|.
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHH
Confidence 446689999999652 2447899999999999999999 566899999999999998
No 102
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=2.7e-05 Score=76.45 Aligned_cols=104 Identities=22% Similarity=0.247 Sum_probs=81.9
Q ss_pred ceeeeeeeccCCCCCccchhhhccHHHHHHHHHHHHHhCCChhhHhhhHhhhhhhccccccCCCchhhhccccccccCCc
Q psy11884 118 KCFYSIQTSPQGSVGSGLMKTLVLQKVLTMILSLKAVIRVPPRLFSSFKYGALQLNRFHLVNPQPLIYLRHSAHFHTSPS 197 (644)
Q Consensus 118 ~~~~~~~~s~~~~~~~~~~~~~l~~~e~~~L~~vaai~~i~~~~~~~l~~~~~~~~R~~~~~~~~~~~~~~~~~~~~s~~ 197 (644)
--|+.-|...+..+|. .++.|+..+..++.++++++..++.... +...
T Consensus 63 ~~l~ra~~~lal~~g~------~~~~e~~~l~~~~~l~~~~~~~~e~~~~------~~~~-------------------- 110 (174)
T COG1076 63 DPLLRAEYLLALADGL------DHAKERQTLRDIAFLLEQSELREELEEA------REQL-------------------- 110 (174)
T ss_pred HHHHHHHHHHHhcccc------cchhHHHHHHHHHHHHHhhHHHHHHHHH------HHcc--------------------
Confidence 3455555555555665 8999999999999999998888776662 2210
Q ss_pred ccCCCccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hHHHHHHHhhhhhhhhc
Q psy11884 198 LSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKT--D-----PNASKKFHEVSEAYEVL 257 (644)
Q Consensus 198 ~~~~~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~--~-----~~a~e~f~~I~~AYevL 257 (644)
...++|++|++...++..+|+++||++..++|||+..+ . ..+.+++++|++||+.+
T Consensus 111 ----~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 111 ----DREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred ----cchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 12589999999999999999999999999999998432 2 24899999999999854
No 103
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.66 E-value=6.4e-05 Score=87.04 Aligned_cols=70 Identities=50% Similarity=0.910 Sum_probs=66.0
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcccccccccccCCccc
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSE 274 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G~~~~ 274 (644)
+|||++|||+++|+.++||+|||+||+++|||++++ +.+.++|++|++||++|+||.+|+.||.||..+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 599999999999999999999999999999999876 7888999999999999999999999999987554
No 104
>KOG0723|consensus
Probab=97.64 E-value=5.9e-05 Score=67.56 Aligned_cols=59 Identities=24% Similarity=0.417 Sum_probs=49.8
Q ss_pred cCCCccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCccc
Q psy11884 199 SNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDT 261 (644)
Q Consensus 199 ~~~~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~ 261 (644)
+.|..+..-.||||+++++.+.||+|+|+.....|||+..+ |-. -.+||||+++|....
T Consensus 51 ~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-PYl---AsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 51 PKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-PYL---ASKINEAKDLLEGTS 109 (112)
T ss_pred cccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-HHH---HHHHHHHHHHHhccc
Confidence 34567789999999999999999999999999999999876 532 257999999997543
No 105
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.55 E-value=4.8e-05 Score=85.20 Aligned_cols=67 Identities=25% Similarity=0.666 Sum_probs=49.2
Q ss_pred ecCCCCCcccccCCCccccCCCCCCcceEE-eee---c--------Cce-eeeecCCCCceeEEE-eeccccCCCCceeE
Q psy11884 406 DICPKCRGTRCELGTKSVRCTYCQGSGYET-TTT---G--------PFI-MKTTCRYCSGSGIYI-KFPCQNCDGMGQNI 471 (644)
Q Consensus 406 ~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~-~~~---G--------~~~-~~~~C~~C~G~G~~i-~~~C~~C~G~G~v~ 471 (644)
..|+.|+|+|...- ....|+.|+|+|..- ... + .+. ...+|+.|.|+|++. ...|+.|.|+|.+.
T Consensus 3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 46999999997653 456899999999641 110 1 112 256999999999975 58999999999875
Q ss_pred EE
Q psy11884 472 QR 473 (644)
Q Consensus 472 e~ 473 (644)
.-
T Consensus 82 ~c 83 (715)
T COG1107 82 TC 83 (715)
T ss_pred ee
Confidence 53
No 106
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=97.28 E-value=0.00055 Score=58.81 Aligned_cols=33 Identities=33% Similarity=0.591 Sum_probs=25.6
Q ss_pred EEEEEeeCCCCCCCCEEEEecCC----------ceEEEEEEee
Q psy11884 474 RTVSIPIPQGIEDGQTIRFPIGQ----------DQIFVTFQVI 506 (644)
Q Consensus 474 ~~l~V~IPpGv~dG~~I~~~g~g----------gDL~v~i~vk 506 (644)
+.++|.||+|+++|+.++++|.| |||+|+++|.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~ 69 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVE 69 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEE
Confidence 46788899999999999999643 6899998876
No 107
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.11 E-value=0.00045 Score=57.27 Aligned_cols=42 Identities=38% Similarity=0.852 Sum_probs=29.9
Q ss_pred CCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eeccccCCCCceeE
Q psy11884 425 CTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQNCDGMGQNI 471 (644)
Q Consensus 425 C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~C~G~G~v~ 471 (644)
|+.|+|+|.. +.....+|+.|+|+|.++ ..+|+.|+|.|.+.
T Consensus 1 C~~C~G~G~~-----~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAK-----PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB------STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccC-----CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 8899999964 334467999999999975 35799999999773
No 108
>KOG0712|consensus
Probab=97.10 E-value=0.00064 Score=72.95 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=37.6
Q ss_pred cEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHH
Q psy11884 543 DTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEK 592 (644)
Q Consensus 543 ~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~ 592 (644)
+.+.|.|++|...++.+...|++-..... ..||+++.+.-.=...+...
T Consensus 202 kil~v~V~~g~~~~~ki~f~geadea~g~-~pgD~vl~i~~k~h~~F~Rr 250 (337)
T KOG0712|consen 202 KILEVHVEPGMPHGQKITFKGEADEAPGT-KPGDVVLLIDQKEHPGFDRR 250 (337)
T ss_pred heeeccccCCCcccceeeeeeeeeecCCC-cCccEEEEecccccccceec
Confidence 45899999999999999999999655433 47999999987764444433
No 109
>KOG0715|consensus
Probab=96.22 E-value=0.0063 Score=64.59 Aligned_cols=108 Identities=24% Similarity=0.444 Sum_probs=75.0
Q ss_pred ccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------eeccccCCCCceeEEEEEEEEeeCCCCCCCCEEEE
Q psy11884 421 KSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------KFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF 492 (644)
Q Consensus 421 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~e~~~l~V~IPpGv~dG~~I~~ 492 (644)
....|..|.|.|.+ +......|..|.|+|... ..+|..|.|.|.+..
T Consensus 163 ~~~~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~-------------------- 217 (288)
T KOG0715|consen 163 VLSDCETCFGSGAE-----EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR-------------------- 217 (288)
T ss_pred eecccccccCcCcc-----cccccccchhhhCcccccccccCCcceeecccccccceecc--------------------
Confidence 46689999999943 455677899999999322 236999999886532
Q ss_pred ecCCceEEEEEEeecCCCccccCCCeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCC
Q psy11884 493 PIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSS 572 (644)
Q Consensus 493 ~g~ggDL~v~i~vkph~~F~R~G~DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~ 572 (644)
+-..+..|-. .|..- +.+.|.+|+|+.++.++++++.|-.
T Consensus 218 --------------------------------~~c~~~~g~~-~v~~~--k~i~i~~~~g~~~~~~l~~~~~~~~----- 257 (288)
T KOG0715|consen 218 --------------------------------DNCQACSGAG-QVRRA--KDIMIVLPAGVRSADTLRFAGHGND----- 257 (288)
T ss_pred --------------------------------chHHHhhcch-hhhhh--eeEEeecCcccccccEEEEecCCcc-----
Confidence 1123333433 33222 4579999999999999999998743
Q ss_pred CCccEEEEEEEECCCCCCHHHHHH
Q psy11884 573 GYGHHFVHVKIEVPRYPSEKQKDL 596 (644)
Q Consensus 573 ~rGDL~V~f~V~fP~~Ls~~q~~l 596 (644)
||+|.+.|.--..+..+..++
T Consensus 258 ---~l~v~~~v~~~~~~~r~~~~i 278 (288)
T KOG0715|consen 258 ---DLFVRLIVAKSPSFRREGKDI 278 (288)
T ss_pred ---eEEEEEEeccCcccccccCcc
Confidence 999999998766666443333
No 110
>KOG2813|consensus
Probab=95.96 E-value=0.0031 Score=66.43 Aligned_cols=21 Identities=38% Similarity=0.953 Sum_probs=12.9
Q ss_pred ecCCCCCcccccCCCccccCCCCCCcc
Q psy11884 406 DICPKCRGTRCELGTKSVRCTYCQGSG 432 (644)
Q Consensus 406 ~~C~~C~GtG~~~g~~~~~C~~C~G~G 432 (644)
..|..|.|.|. ..|+.|+|.|
T Consensus 188 ~~ch~c~gRG~------~vc~gc~g~G 208 (406)
T KOG2813|consen 188 TFCHACLGRGA------MVCHGCSGSG 208 (406)
T ss_pred hhhhcccCCCc------eeccCcCCCC
Confidence 35666666662 4566666666
No 111
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=95.94 E-value=0.0062 Score=55.72 Aligned_cols=39 Identities=41% Similarity=0.940 Sum_probs=31.1
Q ss_pred CccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE---------eeccccCCCCce
Q psy11884 420 TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI---------KFPCQNCDGMGQ 469 (644)
Q Consensus 420 ~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i---------~~~C~~C~G~G~ 469 (644)
.....|..|+|+|. .+|+.|+|+|.+. ..+|+.|+|.|.
T Consensus 39 ~~~v~C~~C~GsG~-----------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk 86 (111)
T PLN03165 39 ENTQPCFPCSGTGA-----------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS 86 (111)
T ss_pred ccCCCCCCCCCCCC-----------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce
Confidence 34678999999996 2799999998764 347999999984
No 112
>KOG2813|consensus
Probab=95.92 E-value=0.0068 Score=63.99 Aligned_cols=26 Identities=38% Similarity=0.993 Sum_probs=16.4
Q ss_pred ecCCCCceeEEEeeccccCCCCceeEEEE
Q psy11884 446 TCRYCSGSGIYIKFPCQNCDGMGQNIQRR 474 (644)
Q Consensus 446 ~C~~C~G~G~~i~~~C~~C~G~G~v~e~~ 474 (644)
.|+.|.|.| +.+|.+|.|.|.+..-.
T Consensus 247 ~C~tC~grG---~k~C~TC~gtgsll~~t 272 (406)
T KOG2813|consen 247 ECHTCKGRG---KKPCTTCSGTGSLLNYT 272 (406)
T ss_pred cCCcccCCC---CcccccccCccceeeeE
Confidence 466666666 34788888877664433
No 113
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.0083 Score=67.83 Aligned_cols=58 Identities=29% Similarity=0.671 Sum_probs=38.1
Q ss_pred eecCCCCCcccccCCC------------------ccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEe--------
Q psy11884 405 IDICPKCRGTRCELGT------------------KSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIK-------- 458 (644)
Q Consensus 405 ~~~C~~C~GtG~~~g~------------------~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~-------- 458 (644)
...|+.|+|+|....- .-..|+.|+|+|.+. ..-+|+.|+|+|++..
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~-------v~~~c~~c~G~gkv~~c~~cG~~~ 90 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT-------VYDTCPECGGTGKVLTCDICGDII 90 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE-------EEeecccCCCceeEEeecccccee
Confidence 3468888888843211 134788888888653 2347888888888752
Q ss_pred e-----ccccCCCCce
Q psy11884 459 F-----PCQNCDGMGQ 469 (644)
Q Consensus 459 ~-----~C~~C~G~G~ 469 (644)
. .|+.|.-++.
T Consensus 91 ~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 91 VPWEEGLCPECRRKPK 106 (715)
T ss_pred cCcccccChhHhhCCc
Confidence 1 2788876554
No 114
>KOG3192|consensus
Probab=94.93 E-value=0.021 Score=54.86 Aligned_cols=65 Identities=29% Similarity=0.560 Sum_probs=52.3
Q ss_pred ccChhhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC----C-hHHHHHHHhhhhhhhhcCccccccccc
Q psy11884 203 RKDYYQILGISK--NSSAKEIKKAYYELAKKYHPDTNKT----D-PNASKKFHEVSEAYEVLSDDTKRQEYD 267 (644)
Q Consensus 203 ~~d~Y~vLGv~~--~as~~eIKkaYRkLa~~~HPDk~~~----~-~~a~e~f~~I~~AYevLsd~~kR~~YD 267 (644)
..+||.++|... ...+.-++.-|--..++.|||+... + ..|.+.-+++|+||..|.||-.|+.|=
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 468999997644 4456666668999999999998321 1 247888999999999999999999996
No 115
>KOG0431|consensus
Probab=93.58 E-value=0.057 Score=60.85 Aligned_cols=51 Identities=27% Similarity=0.407 Sum_probs=39.7
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-------HHHHHHHhhhhhhhhc
Q psy11884 207 YQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDP-------NASKKFHEVSEAYEVL 257 (644)
Q Consensus 207 Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~-------~a~e~f~~I~~AYevL 257 (644)
++-..+..=.+.++|||+|||..+..||||.+..+ -|++.|..+++||+.-
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 34456666679999999999999999999976542 2677777888887754
No 116
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=90.81 E-value=0.14 Score=51.18 Aligned_cols=29 Identities=34% Similarity=0.695 Sum_probs=17.0
Q ss_pred eecCCCCCcccccCCCccccCCCCCCcceE
Q psy11884 405 IDICPKCRGTRCELGTKSVRCTYCQGSGYE 434 (644)
Q Consensus 405 ~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~ 434 (644)
...|+.|+|+|..... ...|+.|+|+|.+
T Consensus 99 ~~~C~~C~G~G~~i~~-~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRR-QRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEecC-CCCCCCCCCccEE
Confidence 5567777777753321 1456777666643
No 117
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=0.22 Score=49.06 Aligned_cols=51 Identities=35% Similarity=0.496 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHhhhhhhhhcCcccccccccc
Q psy11884 218 AKEIKKAYYELAKKYHPDTNKTDP-----NASKKFHEVSEAYEVLSDDTKRQEYDT 268 (644)
Q Consensus 218 ~~eIKkaYRkLa~~~HPDk~~~~~-----~a~e~f~~I~~AYevLsd~~kR~~YD~ 268 (644)
.+.++..|+.+.+.+|||+....+ .+.+.+..++.||.+|.||-+|..|=.
T Consensus 17 ~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 17 LDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred HhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 455789999999999999965432 256789999999999999999999864
No 118
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=89.49 E-value=0.42 Score=44.90 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=39.2
Q ss_pred CCccChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCccc
Q psy11884 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDT 261 (644)
Q Consensus 201 ~~~~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~~ 261 (644)
+.......||||++..+.++|.+.|.+|-...+|+++++ .-- =.+|..|.+.|..+-
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS-fYL---QSKV~rAKErl~~El 111 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS-FYL---QSKVFRAKERLEQEL 111 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS--HHH---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC-HHH---HHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999998764 221 245777888776443
No 119
>KOG2824|consensus
Probab=86.81 E-value=0.74 Score=48.34 Aligned_cols=64 Identities=22% Similarity=0.456 Sum_probs=43.0
Q ss_pred HHHHhcCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEeeccccCC
Q psy11884 389 FETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCD 465 (644)
Q Consensus 389 LeEa~~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~ 465 (644)
|.+++.|.. -.-.-.|..|.|.+. ..|..|+|+=.+....+....-.+|..|+-.|-+ +|+.|.
T Consensus 217 L~~lL~~~p----~~~~~~C~~CGg~rF------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv---rCp~Cs 280 (281)
T KOG2824|consen 217 LGKLLKGIP----CEGGGVCESCGGARF------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV---RCPVCS 280 (281)
T ss_pred HHHHHhcCC----CCCCCcCCCcCCcce------EecCCCCCceeeeeeccCCCcEEECcccCCCCce---eCCccC
Confidence 555666544 112257888887664 5799999988765544455556789999888854 688774
No 120
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=81.24 E-value=2.2 Score=53.05 Aligned_cols=76 Identities=30% Similarity=0.484 Sum_probs=45.9
Q ss_pred cCHHHHh--------cCceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCcee---E
Q psy11884 387 IDFETAA--------RGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSG---I 455 (644)
Q Consensus 387 vTLeEa~--------~G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G---~ 455 (644)
-++.+|+ .+...++.+. ...|+.|..... ...|+.|+..=. ....|+.|+..= .
T Consensus 642 R~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te---------~vy~CPsCGaev~~de 706 (1337)
T PRK14714 642 RDVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTE---------PVYVCPDCGAEVPPDE 706 (1337)
T ss_pred ccHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCC---------CceeCccCCCccCCCc
Confidence 3566776 4555555554 568999986532 238999977621 123799998731 0
Q ss_pred EEeeccccCCCCceeEEEEEEE
Q psy11884 456 YIKFPCQNCDGMGQNIQRRTVS 477 (644)
Q Consensus 456 ~i~~~C~~C~G~G~v~e~~~l~ 477 (644)
.....|+.|...-.-...+.+.
T Consensus 707 s~a~~CP~CGtplv~~~~~~i~ 728 (1337)
T PRK14714 707 SGRVECPRCDVELTPYQRRTIN 728 (1337)
T ss_pred cccccCCCCCCcccccceEEec
Confidence 0133799998765444444443
No 121
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=77.38 E-value=15 Score=37.10 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=18.9
Q ss_pred CEEEEEeeeCcEEEEEeCCC-CCCCcEEEEcC
Q psy11884 533 GTINVEGIYGDTLSVEIQPG-TSSHTKIKIPY 563 (644)
Q Consensus 533 ~~~~I~tLdG~~l~V~IppG-~~~g~~irI~G 563 (644)
+++.||- |.+.|||| ++.|..-.|.|
T Consensus 74 ati~IPE-----l~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 74 ATIRIPE-----LGLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred cEEEccc-----eEEEECCCccCCceEEeeHh
Confidence 4666764 48899999 68887777843
No 122
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=76.71 E-value=16 Score=35.80 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=18.8
Q ss_pred CEEEEEeeeCcEEEEEeCCCCCCCcEEEEcC
Q psy11884 533 GTINVEGIYGDTLSVEIQPGTSSHTKIKIPY 563 (644)
Q Consensus 533 ~~~~I~tLdG~~l~V~IppG~~~g~~irI~G 563 (644)
+++.||- |.+.||||.+.|..-.|.|
T Consensus 75 a~i~IPE-----l~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 75 ATISIPE-----LDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred cEEEeee-----eeEEecCCCCCcEEEehHH
Confidence 4677764 4889999987777766744
No 123
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=76.49 E-value=3.8 Score=41.30 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHhhhhhhhhcCcc
Q psy11884 213 SKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDD 260 (644)
Q Consensus 213 ~~~as~~eIKkaYRkLa~~~HPDk~~~~~~a~e~f~~I~~AYevLsd~ 260 (644)
+++|+.+||++|+.++..+|-- | ++.-.+|..|||.|.=.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~g-----d---~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAG-----D---EKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC-----C---HHHHHHHHHHHHHHHHH
Confidence 5799999999999999999832 3 34556799999976533
No 124
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.29 E-value=2.5 Score=51.91 Aligned_cols=27 Identities=33% Similarity=0.856 Sum_probs=17.3
Q ss_pred ecCCCCceeEEE---------eeccccCCCCceeEE
Q psy11884 446 TCRYCSGSGIYI---------KFPCQNCDGMGQNIQ 472 (644)
Q Consensus 446 ~C~~C~G~G~~i---------~~~C~~C~G~G~v~e 472 (644)
.|+.|.|.|.+. ..+|+.|+|+.+..+
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred CCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 466666666553 457888888776644
No 125
>PF13446 RPT: A repeated domain in UCH-protein
Probab=72.28 E-value=4.8 Score=32.65 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=26.1
Q ss_pred CccChhhhcCCCCCCCHHHHHHHHHHHHH
Q psy11884 202 KRKDYYQILGISKNSSAKEIKKAYYELAK 230 (644)
Q Consensus 202 ~~~d~Y~vLGv~~~as~~eIKkaYRkLa~ 230 (644)
...+.|+.|||+++.+++.|-.+|+....
T Consensus 3 ~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 3 DVEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred CHHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 34579999999999999999999998877
No 126
>PRK04023 DNA polymerase II large subunit; Validated
Probab=70.56 E-value=4.6 Score=49.27 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=45.8
Q ss_pred cCHHHHhc-CceEEEEeeeeecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEeeccccCC
Q psy11884 387 IDFETAAR-GGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCD 465 (644)
Q Consensus 387 vTLeEa~~-G~~k~i~v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~ 465 (644)
-++.+|+. +.+.++.+. ...|+.|.-.. ....|+.|+..- .....|+.|+-... ...|+.|.
T Consensus 608 R~i~~A~~~~g~~eVEVg-~RfCpsCG~~t-----~~frCP~CG~~T---------e~i~fCP~CG~~~~--~y~CPKCG 670 (1121)
T PRK04023 608 RDINKAAKYKGTIEVEIG-RRKCPSCGKET-----FYRRCPFCGTHT---------EPVYRCPRCGIEVE--EDECEKCG 670 (1121)
T ss_pred ccHHHHHhcCCceeeccc-CccCCCCCCcC-----CcccCCCCCCCC---------CcceeCccccCcCC--CCcCCCCC
Confidence 35678887 666666665 35799997653 346899997751 11246999954432 36799998
Q ss_pred CCceeEEEE
Q psy11884 466 GMGQNIQRR 474 (644)
Q Consensus 466 G~G~v~e~~ 474 (644)
-.-.....+
T Consensus 671 ~El~~~s~~ 679 (1121)
T PRK04023 671 REPTPYSKR 679 (1121)
T ss_pred CCCCccceE
Confidence 765443333
No 127
>KOG2824|consensus
Probab=69.52 E-value=4.8 Score=42.43 Aligned_cols=37 Identities=27% Similarity=0.658 Sum_probs=30.4
Q ss_pred ccCCCCCCcceEEeeecCceeeeecCCCCceeEEEe--------eccccCCCCcee
Q psy11884 423 VRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIK--------FPCQNCDGMGQN 470 (644)
Q Consensus 423 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v 470 (644)
..|..|.|.++. +|..|+|.=++.. .+|..|+-.|.+
T Consensus 230 ~~C~~CGg~rFl-----------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 230 GVCESCGGARFL-----------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV 274 (281)
T ss_pred CcCCCcCCcceE-----------ecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence 479999998864 6999999988775 579999988866
No 128
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=66.49 E-value=5.8 Score=38.22 Aligned_cols=23 Identities=39% Similarity=0.876 Sum_probs=15.1
Q ss_pred ecCCCCCcccccCCCccccCCCCCCcceE
Q psy11884 406 DICPKCRGTRCELGTKSVRCTYCQGSGYE 434 (644)
Q Consensus 406 ~~C~~C~GtG~~~g~~~~~C~~C~G~G~~ 434 (644)
..|..|.|.+ -+.|..|+|+=..
T Consensus 100 ~~C~~Cgg~r------fv~C~~C~Gs~k~ 122 (147)
T cd03031 100 GVCEGCGGAR------FVPCSECNGSCKV 122 (147)
T ss_pred CCCCCCCCcC------eEECCCCCCcceE
Confidence 3577777655 3567777777644
No 129
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=64.51 E-value=5.3 Score=49.25 Aligned_cols=20 Identities=30% Similarity=0.697 Sum_probs=12.6
Q ss_pred eccccCCCCceeEEEEEEEEee
Q psy11884 459 FPCQNCDGMGQNIQRRTVSIPI 480 (644)
Q Consensus 459 ~~C~~C~G~G~v~e~~~l~V~I 480 (644)
.+|+.|+|..+..+ .++|.+
T Consensus 762 ~~C~~C~G~R~~~e--~l~v~~ 781 (943)
T PRK00349 762 VPCDVCKGKRYNRE--TLEVKY 781 (943)
T ss_pred ccCccccCcccccc--ceEEEE
Confidence 47888888776654 344444
No 130
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.91 E-value=3.3 Score=50.93 Aligned_cols=34 Identities=26% Similarity=0.523 Sum_probs=21.8
Q ss_pred ccCCCCCCcceEEeeecCce-eeeecCCCCceeEE
Q psy11884 423 VRCTYCQGSGYETTTTGPFI-MKTTCRYCSGSGIY 456 (644)
Q Consensus 423 ~~C~~C~G~G~~~~~~G~~~-~~~~C~~C~G~G~~ 456 (644)
-.|+.|.|.|.+.+.++.+. ...+|+.|+|+...
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeC
Confidence 45777888887655544332 34578888887764
No 131
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=63.10 E-value=22 Score=34.89 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=17.4
Q ss_pred CEEEEEeeeCcEEEEEeCCCC-CCCcEEEEc
Q psy11884 533 GTINVEGIYGDTLSVEIQPGT-SSHTKIKIP 562 (644)
Q Consensus 533 ~~~~I~tLdG~~l~V~IppG~-~~g~~irI~ 562 (644)
+++.||. |.+.||||. +.|..-.|.
T Consensus 72 a~i~IPE-----l~lei~pg~~~~G~iTTVE 97 (163)
T TIGR00340 72 ATIRIPE-----LGIKIEPGPASQGYISNIE 97 (163)
T ss_pred cEEEccc-----eeEEecCCCcCCceEEehH
Confidence 4667764 478999997 677666674
No 132
>KOG0724|consensus
Probab=61.91 E-value=6 Score=42.68 Aligned_cols=56 Identities=30% Similarity=0.552 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHhhhhhhhhcCcccccccccccC
Q psy11884 215 NSSAKEIKKAYYELAKKYHPDTNKT----DPNASKKFHEVSEAYEVLSDDTKRQEYDTWG 270 (644)
Q Consensus 215 ~as~~eIKkaYRkLa~~~HPDk~~~----~~~a~e~f~~I~~AYevLsd~~kR~~YD~~G 270 (644)
-++..+|+.+|+..+..+||++-.. .-..++.+++|.+||++|.+..+|..+|.+-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 3577889999999999999998631 1245778999999999999977767777643
No 133
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=60.13 E-value=11 Score=36.19 Aligned_cols=37 Identities=27% Similarity=0.672 Sum_probs=30.0
Q ss_pred ccCCCCCCcceEEeeecCceeeeecCCCCceeEEEe---------eccccCCCCcee
Q psy11884 423 VRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIK---------FPCQNCDGMGQN 470 (644)
Q Consensus 423 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~---------~~C~~C~G~G~v 470 (644)
..|..|.|.+.+ +|..|+|.=+++. .+|+.|+-.|.+
T Consensus 100 ~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARFV-----------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCeE-----------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 469999999864 6999999988752 379999988865
No 134
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=59.91 E-value=17 Score=36.56 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=46.8
Q ss_pred ecceeEEEEEEcCCCcchHHHHHhHHHHHhhhccceeeeecceEEEeeccCC--------cceeeeeeeccCCCCCccch
Q psy11884 65 ANSQSYVFFYEESDGLTYSSIRQTAKELQRFRNYGQFRLFDTKIAISSCNVT--------KKCFYSIQTSPQGSVGSGLM 136 (644)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~~ 136 (644)
.+.+.+|+.|.-++..++-.+++..+++++..+.--+-|.-+|+=+....+. ++.+.+|||||+++.|+...
T Consensus 84 ~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHH
Confidence 4567789999999999998888887887765432122222222222111111 23467899999999997544
Q ss_pred hhh
Q psy11884 137 KTL 139 (644)
Q Consensus 137 ~~~ 139 (644)
+..
T Consensus 164 f~~ 166 (219)
T PLN03071 164 FLY 166 (219)
T ss_pred HHH
Confidence 433
No 135
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=55.17 E-value=6.9 Score=51.23 Aligned_cols=27 Identities=33% Similarity=0.701 Sum_probs=18.1
Q ss_pred ecCCCCceeEEE---------eeccccCCCCceeEE
Q psy11884 446 TCRYCSGSGIYI---------KFPCQNCDGMGQNIQ 472 (644)
Q Consensus 446 ~C~~C~G~G~~i---------~~~C~~C~G~G~v~e 472 (644)
.|+.|.|.|.+. ..+|+.|+|+.+..+
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e 1644 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPL 1644 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCCCHH
Confidence 577777777653 346888888877644
No 136
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=54.72 E-value=5.9 Score=38.30 Aligned_cols=46 Identities=2% Similarity=-0.022 Sum_probs=38.1
Q ss_pred ceeeeeeeccCCCCCccchhhhccHHHHHHHHHHHHHhCCChhhHhhhHhhh
Q psy11884 118 KCFYSIQTSPQGSVGSGLMKTLVLQKVLTMILSLKAVIRVPPRLFSSFKYGA 169 (644)
Q Consensus 118 ~~~~~~~~s~~~~~~~~~~~~~l~~~e~~~L~~vaai~~i~~~~~~~l~~~~ 169 (644)
++++..++..+.++|. +++.|..+|++|+..||+++..+..+..++
T Consensus 89 ~~ll~~~l~vA~ADG~------l~~~E~~lL~~iA~~LGis~~~~~~l~~~~ 134 (150)
T cd07311 89 RALLYDAIQVCAADGE------LSPGEVAAVRKAASLLGISEDEVQKLEEIY 134 (150)
T ss_pred HHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444447777778887 999999999999999999999999887543
No 137
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=52.85 E-value=34 Score=34.19 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=47.7
Q ss_pred cceeEEEEEEcCCCcchHHHHHhHHHHHhhhccceeeeecceEEEeecc-------CC--------cceeeeeeeccCCC
Q psy11884 66 NSQSYVFFYEESDGLTYSSIRQTAKELQRFRNYGQFRLFDTKIAISSCN-------VT--------KKCFYSIQTSPQGS 130 (644)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~~~~~~~~~s~~~~ 130 (644)
++..+++.|.-++.-+|.+++.-..++++..+ +..|+|-.+- |. ++.+.+|||||..+
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-------~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~ 139 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-------NIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSN 139 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-------CCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCC
Confidence 55678999999999999999888888877542 2333333221 11 12467899999999
Q ss_pred CCccchhhhcc
Q psy11884 131 VGSGLMKTLVL 141 (644)
Q Consensus 131 ~~~~~~~~~l~ 141 (644)
.|+.+++..+.
T Consensus 140 ~~v~~~F~~l~ 150 (200)
T smart00176 140 YNFEKPFLWLA 150 (200)
T ss_pred CCHHHHHHHHH
Confidence 99865555553
No 138
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=52.08 E-value=14 Score=39.98 Aligned_cols=21 Identities=24% Similarity=0.801 Sum_probs=12.2
Q ss_pred ecCCCCceeEEEeeccccCCC
Q psy11884 446 TCRYCSGSGIYIKFPCQNCDG 466 (644)
Q Consensus 446 ~C~~C~G~G~~i~~~C~~C~G 466 (644)
.|..|+-.=...+..|+.|..
T Consensus 214 ~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 214 HCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred EcCCCCCcccccCccCCCCCC
Confidence 466665555555566666653
No 139
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=51.16 E-value=23 Score=34.64 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=7.9
Q ss_pred ccCCCCCCcceE
Q psy11884 423 VRCTYCQGSGYE 434 (644)
Q Consensus 423 ~~C~~C~G~G~~ 434 (644)
..|+.|+..|..
T Consensus 2 s~Cp~C~~~~~~ 13 (161)
T PF03367_consen 2 SLCPNCGENGTT 13 (161)
T ss_dssp EE-TTTSSCCEE
T ss_pred CcCCCCCCCcEE
Confidence 368888888843
No 140
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=47.96 E-value=13 Score=44.50 Aligned_cols=61 Identities=21% Similarity=0.419 Sum_probs=41.0
Q ss_pred cCceEEEEeee-----eecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEeeccccCCCC
Q psy11884 394 RGGYKEVDVNV-----IDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGM 467 (644)
Q Consensus 394 ~G~~k~i~v~~-----~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 467 (644)
.|...-+-++| ...|..|.- ...|+.|...=... + ....-.|-.|+=. ..+...|+.|.+.
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg~--------v~~Cp~Cd~~lt~H-~---~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCGY--------IAECPNCDSPLTLH-K---ATGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred cCCeEEEEEccCCccceeecccCCC--------cccCCCCCcceEEe-c---CCCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 45555555664 468999963 46899998762111 1 1134579999877 5667899999876
No 141
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=46.79 E-value=15 Score=44.31 Aligned_cols=33 Identities=30% Similarity=0.759 Sum_probs=23.4
Q ss_pred eecCCCCceeEEE---------eeccccCCCCceeEEEEEEEEe
Q psy11884 445 TTCRYCSGSGIYI---------KFPCQNCDGMGQNIQRRTVSIP 479 (644)
Q Consensus 445 ~~C~~C~G~G~~i---------~~~C~~C~G~G~v~e~~~l~V~ 479 (644)
-.|..|.|.|.+. -.+|..|+|+.+..+ +++|.
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~E--tLev~ 772 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRE--TLEVK 772 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccccc--eEEEE
Confidence 4788888888764 257999999887644 45543
No 142
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=46.12 E-value=32 Score=31.71 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHhhhhhhhhcCcc
Q psy11884 214 KNSSAKEIKKAYYELAKKYHPDTNKTDPN----ASKKFHEVSEAYEVLSDD 260 (644)
Q Consensus 214 ~~as~~eIKkaYRkLa~~~HPDk~~~~~~----a~e~f~~I~~AYevLsd~ 260 (644)
+..+..+++.|.|.+-++.|||.-...|+ .++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34567889999999999999997554443 456677777777766543
No 143
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=41.77 E-value=8.6 Score=46.30 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=0.0
Q ss_pred eecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEeeccccCCCCcee
Q psy11884 405 IDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQN 470 (644)
Q Consensus 405 ~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v 470 (644)
...|+.|.-.. ....|+.|+..=. ....|+.|+-. .....|+.|......
T Consensus 655 ~r~Cp~Cg~~t-----~~~~Cp~CG~~T~---------~~~~Cp~C~~~--~~~~~C~~C~~~~~~ 704 (900)
T PF03833_consen 655 RRRCPKCGKET-----FYNRCPECGSHTE---------PVYVCPDCGIE--VEEDECPKCGRETTS 704 (900)
T ss_dssp ------------------------------------------------------------------
T ss_pred cccCcccCCcc-----hhhcCcccCCccc---------cceeccccccc--cCccccccccccCcc
Confidence 45799997543 3568999965421 12469999663 234689999876543
No 144
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=40.31 E-value=67 Score=30.41 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=48.1
Q ss_pred cceeEEEEEEcCCCcchHHHHHhHHHHHhhhccceeeeecceEEEeeccC--------CcceeeeeeeccCCCCCccchh
Q psy11884 66 NSQSYVFFYEESDGLTYSSIRQTAKELQRFRNYGQFRLFDTKIAISSCNV--------TKKCFYSIQTSPQGSVGSGLMK 137 (644)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~~~~~~~ 137 (644)
...-+++.|.-++..++..++...+++++..+-=..-+.-+|+=+....+ -.++..+||+||+.+.|..+++
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 151 (166)
T cd00877 72 GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPF 151 (166)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHH
Confidence 46678999999999999888888888877654111111122221221111 0234568999999999986655
Q ss_pred hhcc
Q psy11884 138 TLVL 141 (644)
Q Consensus 138 ~~l~ 141 (644)
..+.
T Consensus 152 ~~l~ 155 (166)
T cd00877 152 LWLA 155 (166)
T ss_pred HHHH
Confidence 5554
No 145
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=38.98 E-value=16 Score=44.12 Aligned_cols=19 Identities=16% Similarity=0.030 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHHhCCCh
Q psy11884 141 LQKVLTMILSLKAVIRVPP 159 (644)
Q Consensus 141 ~~~e~~~L~~vaai~~i~~ 159 (644)
..-+..++..++..++++-
T Consensus 309 ~~~~~~~l~~l~~~~~~d~ 327 (935)
T COG0178 309 NSYYLQMLQALAEHYGFDL 327 (935)
T ss_pred CchHHHHHHHHHHHcCCCc
Confidence 4456667777777776654
No 146
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=38.84 E-value=12 Score=49.22 Aligned_cols=32 Identities=34% Similarity=0.710 Sum_probs=18.2
Q ss_pred cCCCCCCcceEEeeecCce-eeeecCCCCceeE
Q psy11884 424 RCTYCQGSGYETTTTGPFI-MKTTCRYCSGSGI 455 (644)
Q Consensus 424 ~C~~C~G~G~~~~~~G~~~-~~~~C~~C~G~G~ 455 (644)
.|+.|+|.|.+.+.+..+- ...+|+.|+|+..
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCC
Confidence 4667777776544443221 3456777777665
No 147
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=38.44 E-value=31 Score=29.27 Aligned_cols=50 Identities=28% Similarity=0.676 Sum_probs=25.7
Q ss_pred cCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEe------eccccCCC
Q psy11884 407 ICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIK------FPCQNCDG 466 (644)
Q Consensus 407 ~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------~~C~~C~G 466 (644)
.||.|+..=...+ ..-.|..|... +.....||.|+-.=.+.+ -.|.+|+|
T Consensus 3 ~CP~C~~~L~~~~-~~~~C~~C~~~---------~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~g 58 (70)
T PF07191_consen 3 TCPKCQQELEWQG-GHYHCEACQKD---------YKKEAFCPDCGQPLEVLKACGAVDYFCNHCHG 58 (70)
T ss_dssp B-SSS-SBEEEET-TEEEETTT--E---------EEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-
T ss_pred cCCCCCCccEEeC-CEEECcccccc---------ceecccCCCcccHHHHHHHhcccceeeccCCc
Confidence 5888876632222 45678888653 345667888887776653 46888876
No 148
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=38.44 E-value=18 Score=33.21 Aligned_cols=25 Identities=24% Similarity=0.717 Sum_probs=14.7
Q ss_pred eeecCCCCCcccccCCCccccCCCC
Q psy11884 404 VIDICPKCRGTRCELGTKSVRCTYC 428 (644)
Q Consensus 404 ~~~~C~~C~GtG~~~g~~~~~C~~C 428 (644)
.+++|+.|.-.-...+..+.+||.|
T Consensus 8 tKR~Cp~CG~kFYDLnk~PivCP~C 32 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNKDPIVCPKC 32 (108)
T ss_pred CcccCCCCcchhccCCCCCccCCCC
Confidence 3456777765555555555556666
No 149
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=37.65 E-value=38 Score=25.25 Aligned_cols=26 Identities=27% Similarity=0.676 Sum_probs=11.4
Q ss_pred CCCCCCcceEEeeecCceeeeecCCCCc
Q psy11884 425 CTYCQGSGYETTTTGPFIMKTTCRYCSG 452 (644)
Q Consensus 425 C~~C~G~G~~~~~~G~~~~~~~C~~C~G 452 (644)
||.|+. -+.....+. ...-.|+.|+|
T Consensus 2 CP~C~~-~l~~~~~~~-~~id~C~~C~G 27 (41)
T PF13453_consen 2 CPRCGT-ELEPVRLGD-VEIDVCPSCGG 27 (41)
T ss_pred cCCCCc-ccceEEECC-EEEEECCCCCe
Confidence 666655 233333322 22334555554
No 150
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.93 E-value=34 Score=36.95 Aligned_cols=51 Identities=27% Similarity=0.694 Sum_probs=0.0
Q ss_pred CCCC---------CcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE--------------eeccccC
Q psy11884 408 CPKC---------RGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI--------------KFPCQNC 464 (644)
Q Consensus 408 C~~C---------~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------------~~~C~~C 464 (644)
||.| .+.+...|.+.-.|+.|...=. ..+..|+.|+-+...- ...|..|
T Consensus 187 CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~--------~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~r~e~C~~C 258 (305)
T TIGR01562 187 CPACGSPPVASMVRQGGKETGLRYLSCSLCATEWH--------YVRVKCSHCEESKHLAYLSLEHDAEKAVLKAETCDSC 258 (305)
T ss_pred CCCCCChhhhhhhcccCCCCCceEEEcCCCCCccc--------ccCccCCCCCCCCceeeEeecCCCCCcceEEeecccc
Q ss_pred CC
Q psy11884 465 DG 466 (644)
Q Consensus 465 ~G 466 (644)
++
T Consensus 259 ~~ 260 (305)
T TIGR01562 259 QG 260 (305)
T ss_pred cc
No 151
>PRK05580 primosome assembly protein PriA; Validated
Probab=34.35 E-value=42 Score=40.04 Aligned_cols=61 Identities=21% Similarity=0.428 Sum_probs=38.4
Q ss_pred cCceEEEEeee-----eecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEeeccccCCCC
Q psy11884 394 RGGYKEVDVNV-----IDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGM 467 (644)
Q Consensus 394 ~G~~k~i~v~~-----~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 467 (644)
.|...-+-+++ ...|..|.- ...|+.|++. +..... ...-.|..|+-+- .+...|+.|.+.
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg~--------~~~C~~C~~~-l~~h~~---~~~l~Ch~Cg~~~-~~~~~Cp~Cg~~ 430 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCGW--------VAECPHCDAS-LTLHRF---QRRLRCHHCGYQE-PIPKACPECGST 430 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCcC--------ccCCCCCCCc-eeEECC---CCeEECCCCcCCC-CCCCCCCCCcCC
Confidence 45555555664 568999963 4589999883 221111 1234799997543 345789999876
No 152
>PRK14873 primosome assembly protein PriA; Provisional
Probab=34.30 E-value=28 Score=41.45 Aligned_cols=59 Identities=25% Similarity=0.557 Sum_probs=39.0
Q ss_pred cCceEEEEeee-----eecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEeeccccCCCC
Q psy11884 394 RGGYKEVDVNV-----IDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGM 467 (644)
Q Consensus 394 ~G~~k~i~v~~-----~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 467 (644)
.| ..-+-+++ ...|..|. ....|+.|++.=..... ...-.|..|+-.- ....|+.|.+.
T Consensus 368 ~g-qvll~lnRrGyap~l~C~~Cg--------~~~~C~~C~~~L~~h~~----~~~l~Ch~CG~~~--~p~~Cp~Cgs~ 431 (665)
T PRK14873 368 HG-PVLVQVPRRGYVPSLACARCR--------TPARCRHCTGPLGLPSA----GGTPRCRWCGRAA--PDWRCPRCGSD 431 (665)
T ss_pred cC-cEEEEecCCCCCCeeEhhhCc--------CeeECCCCCCceeEecC----CCeeECCCCcCCC--cCccCCCCcCC
Confidence 46 66666664 35899996 34689999875211110 1245799998753 47899999875
No 153
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=33.74 E-value=45 Score=30.80 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=18.3
Q ss_pred cCceEEEE-eeeeecCCCCCcccccCCCccccCCCCCCcc
Q psy11884 394 RGGYKEVD-VNVIDICPKCRGTRCELGTKSVRCTYCQGSG 432 (644)
Q Consensus 394 ~G~~k~i~-v~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G 432 (644)
.|++.+|. ++....|..|.-...........||.|++..
T Consensus 59 ega~L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 59 KDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred CCCEEEEEecCCEEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 34554444 3455678888633322111122355555544
No 154
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=32.96 E-value=25 Score=41.80 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=32.1
Q ss_pred ecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEeeccccCCCC
Q psy11884 406 DICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGM 467 (644)
Q Consensus 406 ~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 467 (644)
..|+.|...- ......|+.|+..- ....|+.|+-.=..-...|+.|...
T Consensus 2 ~~Cp~Cg~~n---~~~akFC~~CG~~l----------~~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFEN---PNNNRFCQKCGTSL----------THKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcC---CCCCccccccCCCC----------CCCcCCCCCCCCCcccccccccCCc
Confidence 4799996542 23456899994432 1246999977644445789999754
No 155
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=32.65 E-value=1.3e+02 Score=25.82 Aligned_cols=33 Identities=12% Similarity=0.312 Sum_probs=26.8
Q ss_pred cChhhhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q psy11884 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDT 236 (644)
Q Consensus 204 ~d~Y~vLGv~~~as~~eIKkaYRkLa~~~HPDk 236 (644)
++--+..|++|-|++.||+.|-++.+++..=-.
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT 35 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTT 35 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 456678899999999999999988888764333
No 156
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.37 E-value=57 Score=30.02 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=10.8
Q ss_pred cCceEEEEe-eeeecCCCCCc
Q psy11884 394 RGGYKEVDV-NVIDICPKCRG 413 (644)
Q Consensus 394 ~G~~k~i~v-~~~~~C~~C~G 413 (644)
.|++..+.. +....|+.|.-
T Consensus 58 ega~L~I~~~p~~~~C~~Cg~ 78 (115)
T TIGR00100 58 EGAKLNIEDEPVECECEDCSE 78 (115)
T ss_pred CCCEEEEEeeCcEEEcccCCC
Confidence 344444443 34567777763
No 157
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=31.24 E-value=27 Score=32.94 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=17.5
Q ss_pred eeecCCCCCcccccCCCccccCCCCCC
Q psy11884 404 VIDICPKCRGTRCELGTKSVRCTYCQG 430 (644)
Q Consensus 404 ~~~~C~~C~GtG~~~g~~~~~C~~C~G 430 (644)
.+++|+.|.-.-...+..+.+||.|+-
T Consensus 8 tKr~Cp~cg~kFYDLnk~p~vcP~cg~ 34 (129)
T TIGR02300 8 TKRICPNTGSKFYDLNRRPAVSPYTGE 34 (129)
T ss_pred ccccCCCcCccccccCCCCccCCCcCC
Confidence 456788876666666666667777643
No 158
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.17 E-value=37 Score=24.91 Aligned_cols=7 Identities=43% Similarity=1.094 Sum_probs=3.3
Q ss_pred eeecCCC
Q psy11884 444 KTTCRYC 450 (644)
Q Consensus 444 ~~~C~~C 450 (644)
...|+.|
T Consensus 25 ~vrC~~C 31 (37)
T PF13719_consen 25 KVRCPKC 31 (37)
T ss_pred EEECCCC
Confidence 3445555
No 159
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=30.24 E-value=88 Score=29.19 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=18.5
Q ss_pred EEEEEEEeeCCCCCCCCEEEEec
Q psy11884 472 QRRTVSIPIPQGIEDGQTIRFPI 494 (644)
Q Consensus 472 e~~~l~V~IPpGv~dG~~I~~~g 494 (644)
+...+++.-+.+++.||.+.+..
T Consensus 40 ~~~~~~~~~~~~~~~GD~V~v~i 62 (135)
T PF04246_consen 40 KPITFRAPNPIGAKVGDRVEVEI 62 (135)
T ss_pred CcEEEEecCCCCCCCCCEEEEEe
Confidence 34678888899999999887764
No 160
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.82 E-value=34 Score=39.35 Aligned_cols=62 Identities=23% Similarity=0.399 Sum_probs=36.5
Q ss_pred cCceEEEEeee-----eecCCCCCcccccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEEeeccccCCCCc
Q psy11884 394 RGGYKEVDVNV-----IDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGMG 468 (644)
Q Consensus 394 ~G~~k~i~v~~-----~~~C~~C~GtG~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G 468 (644)
.|...-+-+++ ...|..|.- ...|+.|++. +..... ...-.|..|+-+- .+...|+.|.+..
T Consensus 197 ~g~qvLvflnrrGya~~~~C~~Cg~--------~~~C~~C~~~-l~~h~~---~~~l~Ch~Cg~~~-~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 197 AGEQSILFLNRRGYSKNLLCRSCGY--------ILCCPNCDVS-LTYHKK---EGKLRCHYCGYQE-PIPKTCPQCGSED 263 (505)
T ss_pred cCCcEEEEEeCCcCCCeeEhhhCcC--------ccCCCCCCCc-eEEecC---CCeEEcCCCcCcC-CCCCCCCCCCCCe
Confidence 34444444443 357999963 4689999764 211111 1245799996433 3457899998753
No 161
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=29.46 E-value=29 Score=32.05 Aligned_cols=40 Identities=5% Similarity=0.120 Sum_probs=25.4
Q ss_pred eeeeeccCCCCCccchhhhccHHHHHHHHHHHHHhCCChhhHhhhH
Q psy11884 121 YSIQTSPQGSVGSGLMKTLVLQKVLTMILSLKAVIRVPPRLFSSFK 166 (644)
Q Consensus 121 ~~~~~s~~~~~~~~~~~~~l~~~e~~~L~~vaai~~i~~~~~~~l~ 166 (644)
++.=..-+.++|. +++.|..+|..|+.+|++++..+.+++
T Consensus 100 l~~l~~ia~ADG~------~~~~E~~~l~~ia~~L~i~~~~~~~~~ 139 (140)
T PF05099_consen 100 LRMLIAIAYADGE------ISPEEQEFLRRIAEALGISEEDFQRIR 139 (140)
T ss_dssp HHHHHHHCTCTTC-------SCCHHHHHHHHHHHCTS-SS------
T ss_pred HHHHHHHHhcCCC------CCHHHHHHHHHHHHHcCCCHHHHhccc
Confidence 3333444556676 999999999999999999999988765
No 162
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=29.34 E-value=62 Score=29.73 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=11.8
Q ss_pred cCceEEEEe-eeeecCCCCCcc
Q psy11884 394 RGGYKEVDV-NVIDICPKCRGT 414 (644)
Q Consensus 394 ~G~~k~i~v-~~~~~C~~C~Gt 414 (644)
.|++..+.. +....|..|...
T Consensus 58 egA~L~I~~vp~~~~C~~Cg~~ 79 (113)
T PRK12380 58 QGCDLHIVYKPAQAWCWDCSQV 79 (113)
T ss_pred CCCEEEEEeeCcEEEcccCCCE
Confidence 455555553 445677777643
No 163
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=28.69 E-value=1.6e+02 Score=29.38 Aligned_cols=69 Identities=7% Similarity=0.181 Sum_probs=43.9
Q ss_pred cceeEEEEEEcCCCcchHHHHHhHHHHHhhhccceeeeecceEEEeeccC----------------Cc--ceeeeeeecc
Q psy11884 66 NSQSYVFFYEESDGLTYSSIRQTAKELQRFRNYGQFRLFDTKIAISSCNV----------------TK--KCFYSIQTSP 127 (644)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~~~~~s~ 127 (644)
++..+++.|.-+|--++..++....++++.. ..+..|+|-.+-. ++ +...+|||||
T Consensus 72 ~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~------~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA 145 (202)
T cd04120 72 SAKGIILVYDITKKETFDDLPKWMKMIDKYA------SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA 145 (202)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC------CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence 5677889999888888888876655555432 2233444333211 11 2357899999
Q ss_pred CCCCCccchhhhc
Q psy11884 128 QGSVGSGLMKTLV 140 (644)
Q Consensus 128 ~~~~~~~~~~~~l 140 (644)
.++.|+.+.+..+
T Consensus 146 ktg~gV~e~F~~l 158 (202)
T cd04120 146 KDNFNVDEIFLKL 158 (202)
T ss_pred CCCCCHHHHHHHH
Confidence 9999986655443
No 164
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=27.53 E-value=1.3e+02 Score=29.25 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=41.8
Q ss_pred cceeEEEEEEcCCCcchHHHHH-hHHHHHhhhccceeeeecceEEEeec-------------cCCc----------ceee
Q psy11884 66 NSQSYVFFYEESDGLTYSSIRQ-TAKELQRFRNYGQFRLFDTKIAISSC-------------NVTK----------KCFY 121 (644)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~----------~~~~ 121 (644)
+...+++.|.-+|--++..+++ ..+++.+...--..-|-.+|.=|... .|+. .+..
T Consensus 74 ~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 153 (191)
T cd01875 74 QTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVK 153 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence 5667888898888878877764 34445433211112222222222211 1111 2567
Q ss_pred eeeeccCCCCCccchhhhc
Q psy11884 122 SIQTSPQGSVGSGLMKTLV 140 (644)
Q Consensus 122 ~~~~s~~~~~~~~~~~~~l 140 (644)
+||+||+++.|+.+.+..+
T Consensus 154 ~~e~SAk~g~~v~e~f~~l 172 (191)
T cd01875 154 YLECSALNQDGVKEVFAEA 172 (191)
T ss_pred EEEeCCCCCCCHHHHHHHH
Confidence 9999999999985444333
No 165
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=27.34 E-value=31 Score=35.95 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=5.7
Q ss_pred CccEEEEEEEE
Q psy11884 574 YGHHFVHVKIE 584 (644)
Q Consensus 574 rGDL~V~f~V~ 584 (644)
..+|+|++++.
T Consensus 201 vH~i~l~~Q~T 211 (238)
T PF07092_consen 201 VHNIVLHMQGT 211 (238)
T ss_pred EEEEEEEEEEE
Confidence 35566655443
No 166
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=27.08 E-value=1.4e+02 Score=28.59 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=60.6
Q ss_pred CeEEEEecCHhHhhcCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCcCCCCCCCCccEEEEEEEECCCCCCHH
Q psy11884 517 DIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEK 592 (644)
Q Consensus 517 DL~~~~~Isl~eALlG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~P~~~~~~rGDL~V~f~V~fP~~Ls~~ 592 (644)
++...+.++..++..+....+.-.......+.++.+...+..+++.+++.... ...|+++.++.+..+.....+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 223 (237)
T COG2214 150 DLAANLADNFEEALAGVKKAVARLLGKALKSTIKAGALEGKALRLKGLLKSAR--GALGKARLKELSKRHPPFALE 223 (237)
T ss_pred ceeeeeeccHHHHhcCcceeeeccccccccccCCcccccCceeeecccCCcCC--CCcccceeeeeccCCCCcccc
Confidence 67778888999999998888877766665578999999999999999998766 568999999998877654433
No 167
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.68 E-value=73 Score=34.52 Aligned_cols=55 Identities=22% Similarity=0.622 Sum_probs=37.4
Q ss_pred eeecCCCCCccc--------ccCCCccccCCCCCCcceEEeeecCceeeeecCCCCceeEEE------------eecccc
Q psy11884 404 VIDICPKCRGTR--------CELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI------------KFPCQN 463 (644)
Q Consensus 404 ~~~~C~~C~GtG--------~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i------------~~~C~~ 463 (644)
....||.|.+.- ...|.+.-.|..|...=. ..+..|+.|+-++..- ...|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~--------~~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~ 257 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH--------VVRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGD 257 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccc--------ccCccCCCCCCCCceeeeeecCCCcceEeeeccc
Confidence 356899997762 235677889999965432 2256799998766421 256999
Q ss_pred CCC
Q psy11884 464 CDG 466 (644)
Q Consensus 464 C~G 466 (644)
|++
T Consensus 258 C~~ 260 (309)
T PRK03564 258 CGT 260 (309)
T ss_pred ccc
Confidence 986
No 168
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=26.42 E-value=93 Score=29.86 Aligned_cols=68 Identities=7% Similarity=0.122 Sum_probs=41.9
Q ss_pred ecceeEEEEEEcCCCcchHHHHH-hHHHHHhhhccceeeeecceEEEeecc--------------------C--------
Q psy11884 65 ANSQSYVFFYEESDGLTYSSIRQ-TAKELQRFRNYGQFRLFDTKIAISSCN--------------------V-------- 115 (644)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-------- 115 (644)
.++..+++.|.-++.-++..+++ -..++++.. .+..|+|...- |
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-------~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~ 143 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-------PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKL 143 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-------CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHH
Confidence 45677888888888877777764 555554432 12333333221 1
Q ss_pred C--cceeeeeeeccCCCCCccchhhh
Q psy11884 116 T--KKCFYSIQTSPQGSVGSGLMKTL 139 (644)
Q Consensus 116 ~--~~~~~~~~~s~~~~~~~~~~~~~ 139 (644)
+ ..+..+||+||.++.|+.+.+..
T Consensus 144 a~~~~~~~~~e~SA~tg~~v~~~f~~ 169 (175)
T cd01874 144 ARDLKAVKYVECSALTQKGLKNVFDE 169 (175)
T ss_pred HHHhCCcEEEEecCCCCCCHHHHHHH
Confidence 1 12467999999999998655543
No 169
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=26.18 E-value=75 Score=29.22 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=18.4
Q ss_pred cCceEEEEe-eeeecCCCCCcccccCCCccccCCCCCCcc
Q psy11884 394 RGGYKEVDV-NVIDICPKCRGTRCELGTKSVRCTYCQGSG 432 (644)
Q Consensus 394 ~G~~k~i~v-~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G 432 (644)
.|++..+.. +....|..|.-.-.........||.|++..
T Consensus 58 egA~L~i~~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 58 EGCKLHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred CCCEEEEEeeCcEEEcccCCCeeecCCccCCcCcCcCCCC
Confidence 455555553 445677777643322111123355555443
No 170
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=25.53 E-value=1.5e+02 Score=28.90 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=43.0
Q ss_pred ecceeEEEEEEcCCCcchHHH-HHhHHHHHhhhccceeeeecceEEEeecc--------------------CC-------
Q psy11884 65 ANSQSYVFFYEESDGLTYSSI-RQTAKELQRFRNYGQFRLFDTKIAISSCN--------------------VT------- 116 (644)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~------- 116 (644)
.+...+++.|.-++--++..+ .....++++... +..|+|-.+- |.
T Consensus 75 ~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-------~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (182)
T cd04172 75 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-------NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANM 147 (182)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-------CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHH
Confidence 355677888888888777776 555566655432 2333333221 21
Q ss_pred ---cceeeeeeeccCCCCC-ccchhhhcc
Q psy11884 117 ---KKCFYSIQTSPQGSVG-SGLMKTLVL 141 (644)
Q Consensus 117 ---~~~~~~~~~s~~~~~~-~~~~~~~l~ 141 (644)
..|..|+||||+++.+ +.+++..+.
T Consensus 148 a~~~~~~~~~E~SAk~~~n~v~~~F~~~~ 176 (182)
T cd04172 148 AKQIGAATYIECSALQSENSVRDIFHVAT 176 (182)
T ss_pred HHHcCCCEEEECCcCCCCCCHHHHHHHHH
Confidence 1235789999999998 866554443
No 171
>PF08455 SNF2_assoc: Bacterial SNF2 helicase associated; InterPro: IPR013663 This domain is found in bacterial proteins of the SWF/SNF/SWI helicase family to the N terminus of the SNF2 family N-terminal domain (IPR000330 from INTERPRO) and together with the Helicase conserved C-terminal domain (IPR001650 from INTERPRO). The function of the domain is not clear [].
Probab=25.00 E-value=2.8e+02 Score=30.28 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=68.2
Q ss_pred cchhhhcccccC--CCCceEEEEeecce-eEEEEEEcCCCcchHHHHHhHHHHHhhhccceeeeecceEEEeeccCCcce
Q psy11884 43 APYVSKRFRNYG--HFPKIQINVHANSQ-SYVFFYEESDGLTYSSIRQTAKELQRFRNYGQFRLFDTKIAISSCNVTKKC 119 (644)
Q Consensus 43 ~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (644)
.=|+|..|++.- .-|.+++.|..++. .+.=+-=+++|++...+....+.+++=+.| +||.+-.++-
T Consensus 236 eV~~s~~~k~~~~~~~~~~~v~v~~~~~~~lLei~f~~~~i~~~El~~iL~a~~~kkkY--~rLknG~~l~--------- 304 (377)
T PF08455_consen 236 EVYYSDAFKNLKIRKKPSISVGVSVNSEGDLLEISFDSDDIDPEELADILKAYREKKKY--YRLKNGSFLD--------- 304 (377)
T ss_pred EEEECHHHhhhhccCCCCceEEEEECCCCCeEEEEEEeCCCCHHHHHHHHHHHHhCCCE--EECCCCCEEe---------
Confidence 457888888774 57788888888886 676677788999998888887777765555 7888876652
Q ss_pred eeeeeeccCCCCCccchhhhccHHHHHHHHHHHHHhCCChhhHhh
Q psy11884 120 FYSIQTSPQGSVGSGLMKTLVLQKVLTMILSLKAVIRVPPRLFSS 164 (644)
Q Consensus 120 ~~~~~~s~~~~~~~~~~~~~l~~~e~~~L~~vaai~~i~~~~~~~ 164 (644)
+-+.++.-+.++..-+++++..+..
T Consensus 305 --------------------L~~~~l~~l~~ll~~l~l~~~~~~~ 329 (377)
T PF08455_consen 305 --------------------LEDEELEELSELLDDLGLSNKDLKN 329 (377)
T ss_pred --------------------cChHHHHHHHHHHHHhCCChhhccC
Confidence 5667777778887777777666543
No 172
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=24.84 E-value=60 Score=29.72 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=15.7
Q ss_pred cCceEEEEe-eeeecCCCCCcccccCCCccccCCCCCCcc
Q psy11884 394 RGGYKEVDV-NVIDICPKCRGTRCELGTKSVRCTYCQGSG 432 (644)
Q Consensus 394 ~G~~k~i~v-~~~~~C~~C~GtG~~~g~~~~~C~~C~G~G 432 (644)
.|+...+.. +....|..|.-...-.. ....||.|++..
T Consensus 58 e~a~L~Ie~~p~~~~C~~Cg~~~~~~~-~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 58 EGAELEIEEVPARARCRDCGHEFEPDE-FDFSCPRCGSPD 96 (113)
T ss_dssp TT-EEEEEEE--EEEETTTS-EEECHH-CCHH-SSSSSS-
T ss_pred cCCEEEEEecCCcEECCCCCCEEecCC-CCCCCcCCcCCC
Confidence 344444443 44567777765543221 123455555554
No 173
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=24.75 E-value=1.3e+02 Score=23.66 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=29.3
Q ss_pred cCCEEEEEeeeCcEEEEEeCCCCCCCcEEEEcCCCc
Q psy11884 531 LGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGL 566 (644)
Q Consensus 531 lG~~~~I~tLdG~~l~V~IppG~~~g~~irI~GeG~ 566 (644)
-+....|-|.||.-+.|+.+++..-|+++.+.-.-.
T Consensus 4 ~~~~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~ 39 (56)
T PF12791_consen 4 KKKYAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDI 39 (56)
T ss_pred cCCEEEEEcCCCcEEEEeCCCCCcccCEEEEechhh
Confidence 355678889999999999999999999888765543
No 174
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=24.75 E-value=1.9e+02 Score=26.98 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=45.4
Q ss_pred cceeEEEEEEcCCCcchHHHHHhHHHHHhhhcc-ceeeeecceEEEeec-cCC---------cceeeeeeeccCCCCCcc
Q psy11884 66 NSQSYVFFYEESDGLTYSSIRQTAKELQRFRNY-GQFRLFDTKIAISSC-NVT---------KKCFYSIQTSPQGSVGSG 134 (644)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~s~~~~~~~~ 134 (644)
++..++|.|.-+|.-++..+.+..+++++...- -..-+--+|+=+... .++ .....++|+|++.+.|+.
T Consensus 75 ~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 154 (167)
T cd01867 75 GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVE 154 (167)
T ss_pred CCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 566789999989999999998888887765310 011111122111111 111 112468999999999986
Q ss_pred chhhhcc
Q psy11884 135 LMKTLVL 141 (644)
Q Consensus 135 ~~~~~l~ 141 (644)
..+..+.
T Consensus 155 ~~~~~i~ 161 (167)
T cd01867 155 EAFFTLA 161 (167)
T ss_pred HHHHHHH
Confidence 5554443
No 175
>PF14353 CpXC: CpXC protein
Probab=24.52 E-value=58 Score=30.07 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=7.8
Q ss_pred ccCCCCCCcce
Q psy11884 423 VRCTYCQGSGY 433 (644)
Q Consensus 423 ~~C~~C~G~G~ 433 (644)
.+||.|+..+.
T Consensus 2 itCP~C~~~~~ 12 (128)
T PF14353_consen 2 ITCPHCGHEFE 12 (128)
T ss_pred cCCCCCCCeeE
Confidence 46788877774
No 176
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=24.20 E-value=2.5e+02 Score=28.49 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=23.0
Q ss_pred ecceeEEEEEEcCCCcchHHHHHhHHHHHh
Q psy11884 65 ANSQSYVFFYEESDGLTYSSIRQTAKELQR 94 (644)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (644)
.+...+++.|.-+|--++.++.....++.+
T Consensus 66 ~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~ 95 (220)
T cd04126 66 RGAAAVILTYDVSNVQSLEELEDRFLGLTD 95 (220)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 466778999999988888888766666554
No 177
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=23.80 E-value=62 Score=24.34 Aligned_cols=8 Identities=25% Similarity=0.846 Sum_probs=3.8
Q ss_pred eecCCCCc
Q psy11884 445 TTCRYCSG 452 (644)
Q Consensus 445 ~~C~~C~G 452 (644)
..|+.|++
T Consensus 27 ~~CP~Cg~ 34 (42)
T PF09723_consen 27 VPCPECGS 34 (42)
T ss_pred CcCCCCCC
Confidence 34555544
No 178
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=23.31 E-value=58 Score=30.17 Aligned_cols=19 Identities=26% Similarity=0.931 Sum_probs=14.4
Q ss_pred cCCCCceeEEEeeccccCC
Q psy11884 447 CRYCSGSGIYIKFPCQNCD 465 (644)
Q Consensus 447 C~~C~G~G~~i~~~C~~C~ 465 (644)
||.|++.=.+.+-.|+.|+
T Consensus 1 CPvCg~~l~vt~l~C~~C~ 19 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCG 19 (113)
T ss_pred CCCCCCceEEEEEEcCCCC
Confidence 6777777777778888886
No 179
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=23.27 E-value=2.6e+02 Score=26.80 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=43.1
Q ss_pred ecceeEEEEEEcCCCcchHHHHHhHHHHHhhhccc-eeeeecceEEEeecc-C--------C-cceeeeeeeccCCCCCc
Q psy11884 65 ANSQSYVFFYEESDGLTYSSIRQTAKELQRFRNYG-QFRLFDTKIAISSCN-V--------T-KKCFYSIQTSPQGSVGS 133 (644)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~--------~-~~~~~~~~~s~~~~~~~ 133 (644)
.+...++|.|.-+|.-++..+.+..++++++.... .+-|--+|+=+.... + + ...+.++|+|+..+.|+
T Consensus 71 ~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i 150 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINV 150 (188)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 35678999999999888888888777777664321 111111111011110 0 0 11247999999999887
Q ss_pred cchh
Q psy11884 134 GLMK 137 (644)
Q Consensus 134 ~~~~ 137 (644)
...+
T Consensus 151 ~~~f 154 (188)
T cd04125 151 EEAF 154 (188)
T ss_pred HHHH
Confidence 4433
No 180
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=22.97 E-value=86 Score=25.34 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=19.2
Q ss_pred CCccEEEEEEEECCCC--CCHHHHHHH
Q psy11884 573 GYGHHFVHVKIEVPRY--PSEKQKDLV 597 (644)
Q Consensus 573 ~rGDL~V~f~V~fP~~--Ls~~q~~lL 597 (644)
+.||+.|-|+|.+|+- +|.++.+.+
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 4699999999999995 556555543
No 181
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=22.50 E-value=2.3e+02 Score=27.89 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=43.7
Q ss_pred cceeEEEEEEcCCCcchHHHHHhHHHHHhhhccceeeeecceEEEeecc--------CC---------cceeeeeeeccC
Q psy11884 66 NSQSYVFFYEESDGLTYSSIRQTAKELQRFRNYGQFRLFDTKIAISSCN--------VT---------KKCFYSIQTSPQ 128 (644)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---------~~~~~~~~~s~~ 128 (644)
++..+++.|.-++-.++..++.-..++.+..+ +..|+|-.+. |. .....+||+||.
T Consensus 78 ~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-------~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk 150 (189)
T cd04121 78 GAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-------GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPL 150 (189)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-------CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCC
Confidence 66788999999998888888877777755322 3444444322 11 123479999999
Q ss_pred CCCCccchh
Q psy11884 129 GSVGSGLMK 137 (644)
Q Consensus 129 ~~~~~~~~~ 137 (644)
++.|+.+.+
T Consensus 151 ~g~~V~~~F 159 (189)
T cd04121 151 CNFNITESF 159 (189)
T ss_pred CCCCHHHHH
Confidence 999984433
No 182
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=22.39 E-value=92 Score=30.45 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=11.2
Q ss_pred CEEEEEeeeCcEEEEEe-CCCCCCCcEEEE
Q psy11884 533 GTINVEGIYGDTLSVEI-QPGTSSHTKIKI 561 (644)
Q Consensus 533 ~~~~I~tLdG~~l~V~I-ppG~~~g~~irI 561 (644)
+++.||-| .+.| |.+.+.|..-+|
T Consensus 76 ati~IPEl-----~~ei~P~~~~~g~iTTV 100 (161)
T PF03367_consen 76 ATIEIPEL-----GLEIEPGPSQGGFITTV 100 (161)
T ss_dssp -EEEEGGG-----TEEE--TTTT-SEEEEH
T ss_pred EEEEEeec-----ceEEccCCCCCceEEeh
Confidence 45666654 4566 344555544444
No 183
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.95 E-value=70 Score=26.17 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=8.1
Q ss_pred cCceeeeecCCCCceeEE
Q psy11884 439 GPFIMKTTCRYCSGSGIY 456 (644)
Q Consensus 439 G~~~~~~~C~~C~G~G~~ 456 (644)
.|....++|+.|+.....
T Consensus 23 ~~~~TSq~C~~CG~~~~~ 40 (69)
T PF07282_consen 23 DEAYTSQTCPRCGHRNKK 40 (69)
T ss_pred CCCCCccCccCccccccc
Confidence 333344455555444433
No 184
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=21.81 E-value=2.4e+02 Score=27.27 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=42.6
Q ss_pred cceeEEEEEEcCCCcchHHHHHhHHHHHhhhccceeeeecceEEEeec--cC------Cc---------ceeeeeeeccC
Q psy11884 66 NSQSYVFFYEESDGLTYSSIRQTAKELQRFRNYGQFRLFDTKIAISSC--NV------TK---------KCFYSIQTSPQ 128 (644)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~---------~~~~~~~~s~~ 128 (644)
++..+++.|.-++.-++.++.+...++.+..++. ..+..|+|-.+ -. .. .-..+||+||.
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~---~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk 146 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDES---AADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAK 146 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhccc---CCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCC
Confidence 4567888998888888888888777777665431 12233443321 11 10 01358999999
Q ss_pred CCCCccch
Q psy11884 129 GSVGSGLM 136 (644)
Q Consensus 129 ~~~~~~~~ 136 (644)
++.|+.+.
T Consensus 147 ~~~~v~~l 154 (190)
T cd04144 147 TNVNVERA 154 (190)
T ss_pred CCCCHHHH
Confidence 99987433
No 185
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=21.40 E-value=43 Score=34.92 Aligned_cols=12 Identities=58% Similarity=1.171 Sum_probs=7.9
Q ss_pred cccCCCCCCcce
Q psy11884 422 SVRCTYCQGSGY 433 (644)
Q Consensus 422 ~~~C~~C~G~G~ 433 (644)
..+||.|+|+|.
T Consensus 38 ~vtCPTCqGtGr 49 (238)
T PF07092_consen 38 SVTCPTCQGTGR 49 (238)
T ss_pred CCcCCCCcCCcc
Confidence 456777777774
No 186
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=21.31 E-value=1.9e+02 Score=28.57 Aligned_cols=74 Identities=11% Similarity=0.032 Sum_probs=41.1
Q ss_pred ecceeEEEEEEcCCCcchHHHHH-hHHHHHhhhccceeeeecceEEEee--------------------ccCCc------
Q psy11884 65 ANSQSYVFFYEESDGLTYSSIRQ-TAKELQRFRNYGQFRLFDTKIAISS--------------------CNVTK------ 117 (644)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~------ 117 (644)
.++.-.++.|.-+|-.++..++. -..++++....-..-|-.+|+=|.. ..|+.
T Consensus 86 ~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~ 165 (195)
T cd01873 86 GRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAV 165 (195)
T ss_pred CCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHH
Confidence 45666778888888777777753 4455544322112222222222211 11221
Q ss_pred ----ceeeeeeeccCCCCCccchhhh
Q psy11884 118 ----KCFYSIQTSPQGSVGSGLMKTL 139 (644)
Q Consensus 118 ----~~~~~~~~s~~~~~~~~~~~~~ 139 (644)
.| .||||||+++.|+.+.+..
T Consensus 166 a~~~~~-~~~E~SAkt~~~V~e~F~~ 190 (195)
T cd01873 166 AKELGI-PYYETSVVTQFGVKDVFDN 190 (195)
T ss_pred HHHhCC-EEEEcCCCCCCCHHHHHHH
Confidence 24 7999999999998655443
No 187
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=21.11 E-value=52 Score=40.91 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=26.1
Q ss_pred cccCCCCCCcceEEeeecCce-eeeecCCCCceeEE
Q psy11884 422 SVRCTYCQGSGYETTTTGPFI-MKTTCRYCSGSGIY 456 (644)
Q Consensus 422 ~~~C~~C~G~G~~~~~~G~~~-~~~~C~~C~G~G~~ 456 (644)
.-.|+.|.|.|.+...++.+. ...+|+.|+|+...
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCcccc
Confidence 447999999998776655332 35699999999874
No 188
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.96 E-value=57 Score=39.33 Aligned_cols=40 Identities=28% Similarity=0.660 Sum_probs=25.5
Q ss_pred eecCCCCCccccc-CCCccccCCCCCCcceEEeeecCceeeeecCCCCce
Q psy11884 405 IDICPKCRGTRCE-LGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGS 453 (644)
Q Consensus 405 ~~~C~~C~GtG~~-~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~ 453 (644)
...|+.|+..=.. ..+..-.|..|+-... ....|+.|+++
T Consensus 444 v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~---------~p~~Cp~Cgs~ 484 (730)
T COG1198 444 IAECPNCDSPLTLHKATGQLRCHYCGYQEP---------IPQSCPECGSE 484 (730)
T ss_pred cccCCCCCcceEEecCCCeeEeCCCCCCCC---------CCCCCCCCCCC
Confidence 3468888766322 2335668888866531 24568888888
No 189
>KOG4231|consensus
Probab=20.39 E-value=41 Score=38.63 Aligned_cols=15 Identities=47% Similarity=0.873 Sum_probs=12.4
Q ss_pred cchhhhcccccCCCCceE
Q psy11884 43 APYVSKRFRNYGHFPKIQ 60 (644)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~ 60 (644)
.||+ ||||+|||.+|
T Consensus 552 qpfI---FRNY~hp~G~~ 566 (763)
T KOG4231|consen 552 QPFI---FRNYQHPVGTQ 566 (763)
T ss_pred ccee---eeccCCCCCcc
Confidence 4665 99999999984
No 190
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=20.35 E-value=41 Score=30.08 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=6.9
Q ss_pred ccCCCCCCcce
Q psy11884 423 VRCTYCQGSGY 433 (644)
Q Consensus 423 ~~C~~C~G~G~ 433 (644)
..|..|+|.|.
T Consensus 6 ~~c~~c~g~g~ 16 (95)
T PF03589_consen 6 DSCRRCAGDGA 16 (95)
T ss_pred CCcCccCCcce
Confidence 45666777763
No 191
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=20.16 E-value=1.9e+02 Score=28.12 Aligned_cols=69 Identities=12% Similarity=0.210 Sum_probs=42.6
Q ss_pred ecceeEEEEEEcCCCcchHHH-HHhHHHHHhhhccceeeeecceEEEeecc------------------CCc--------
Q psy11884 65 ANSQSYVFFYEESDGLTYSSI-RQTAKELQRFRNYGQFRLFDTKIAISSCN------------------VTK-------- 117 (644)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~-------- 117 (644)
.++..+++.|.-+|--|+..+ +.-..++.+... +.-|+|..+- |+.
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-------~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~ 143 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAP-------NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK 143 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-------CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH
Confidence 455678889988888888776 455555554421 3444444321 211
Q ss_pred --ceeeeeeeccCCCCCccchhhhc
Q psy11884 118 --KCFYSIQTSPQGSVGSGLMKTLV 140 (644)
Q Consensus 118 --~~~~~~~~s~~~~~~~~~~~~~l 140 (644)
.+..+|||||..+.++.+.+..+
T Consensus 144 ~~~~~~~~E~SAk~~~nV~~~F~~~ 168 (176)
T cd04133 144 QIGAAAYIECSSKTQQNVKAVFDAA 168 (176)
T ss_pred HcCCCEEEECCCCcccCHHHHHHHH
Confidence 13358999999999985544433
No 192
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.16 E-value=64 Score=37.13 Aligned_cols=41 Identities=27% Similarity=0.596 Sum_probs=23.2
Q ss_pred eecCCCCCccccc-CCCccccCCCCCCcceEEeeecCceeeeecCCCCcee
Q psy11884 405 IDICPKCRGTRCE-LGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSG 454 (644)
Q Consensus 405 ~~~C~~C~GtG~~-~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G 454 (644)
...|+.|++.=.. .......|+.|+-+- .....|+.|++.-
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~---------~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQE---------PIPKTCPQCGSED 263 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcC---------CCCCCCCCCCCCe
Confidence 3468888765321 123355788885432 1234688887754
Done!