RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11884
(644 letters)
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 276 bits (707), Expect = 2e-87
Identities = 133/412 (32%), Positives = 188/412 (45%), Gaps = 74/412 (17%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQ 264
DYY+ILG+SK++S +EIKKAY +LAKKYHPD NK D A +KF E++EAYEVLSD KR
Sbjct: 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRA 59
Query: 265 EYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEF 324
+YD +G G D F D ++F FG G
Sbjct: 60 QYDQFGHAGFNGGGGGGGGGFNGFD---IGFFG---DFGDIFGDFFGGGG---------- 103
Query: 325 IANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQEVI 384
G G + + P G
Sbjct: 104 -----GSGRRR----------RSGPRR--------------------------GEDLRYD 122
Query: 385 LKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGP---- 440
L++ FE A G KE+++ + C C GT + GT C C G+G G
Sbjct: 123 LELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGF 182
Query: 441 FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ-- 498
F + TC C G G IK PC C G G+ +R+T+++ IP G++ GQ +R G+
Sbjct: 183 FQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVS-GKGNAG 241
Query: 499 --------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQ 550
++V +V P + RD +D++ E IS +QAILGG I V + GD ++I
Sbjct: 242 ENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDV-KLKIP 300
Query: 551 PGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFS 602
GT S T ++ KG+ +G G V VK+E P+ S++QK+L+ E
Sbjct: 301 AGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEELAE 352
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 275 bits (706), Expect = 6e-87
Identities = 134/446 (30%), Positives = 195/446 (43%), Gaps = 90/446 (20%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+DYY+ILG+SK++S +EIKKAY +LAKKYHPD N D A +KF E++EAYEVLSD KR
Sbjct: 4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKR 63
Query: 264 QEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEE 323
YD +G + G D ++F FG G
Sbjct: 64 AAYDQFGHAGFKAGGFGGFGFGGFGG-----------DFGDIFEDFFGGGGGG------- 105
Query: 324 FIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQEV 383
+ + DL+ + IT EE
Sbjct: 106 ----RRRPNRPRRG------------ADLRYN-------LEITLEE-------------- 128
Query: 384 ILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT---TGP 440
A G KE+ V C C G+ + GT C C GSG + T TG
Sbjct: 129 --------AVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSG-QVRTVQRTGF 179
Query: 441 FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ-- 498
F + TC C+G+G IK PC C G G+ +++++S+ IP G++DG IR +
Sbjct: 180 FSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGP 239
Query: 499 -------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQP 551
++V V P + RD D++ E IS ++A LGG I V + G + ++I
Sbjct: 240 NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPA 298
Query: 552 GTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPNTNGNK 611
GT + ++ KG+ S G G +V VK+E P+ S++QK+L+ EF + G +
Sbjct: 299 GTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEFA--KSLGEGPE 356
Query: 612 DDSNQALSGYRDIFLFFSRLIDFIKS 637
FF +L +F K
Sbjct: 357 QSPG-----------FFDKLKNFFKG 371
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 236 bits (604), Expect = 7e-72
Identities = 132/443 (29%), Positives = 192/443 (43%), Gaps = 89/443 (20%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+DYY++LG+S+N+S EIKKAY +LA KYHPD N D A +KF E+ EAYEVLSD KR
Sbjct: 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKR 63
Query: 264 QEYDTWG-ATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEE 322
YD +G A EQ G F ++F IFGD
Sbjct: 64 AAYDQYGHAAFEQGGGGGG--------------FGGGGGFGDIFGDIFGD---------- 99
Query: 323 EFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQE 382
G G + + DL+ + IT EE
Sbjct: 100 -IFGGGRGGGRQR----------ARRGADLRYN-------MEITLEE------------- 128
Query: 383 VILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFI 442
A RG KE+ + + C C G+ + GT C C G+G G F
Sbjct: 129 ---------AVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFT 179
Query: 443 MKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF---------- 492
++ TC C G G IK PC+ C G G+ + +T+S+ IP G++ G IR
Sbjct: 180 VQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERG 239
Query: 493 -PIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQP 551
P G + + V + RD +D++ E IS + A LGG I V + G ++I
Sbjct: 240 GPAGDLYVQI--HVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRV-KLKIPE 296
Query: 552 GTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPNTNGNK 611
GT + ++ KG+K+ S G + V +E P +++QK+L+ EF E + +
Sbjct: 297 GTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF---EESFESGE 353
Query: 612 DDSNQALSGYRDIFLFFSRLIDF 634
S ++ FF ++ DF
Sbjct: 354 KHSPKSKG-------FFDKVKDF 369
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 232 bits (593), Expect = 2e-70
Identities = 135/420 (32%), Positives = 194/420 (46%), Gaps = 75/420 (17%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY+ILG+++++S +EIKK+Y +LA KYHPD N D A + F E +EAYEVLSD K
Sbjct: 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKK 62
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEE 322
R YD +G E +S G S + +D F S FGD DF
Sbjct: 63 RGIYDQYG--HEGLSGTGFSGFSGFDDI-----FSS-----------FGDIFEDF----- 99
Query: 323 EFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQE 382
+GFG + G S T G+
Sbjct: 100 ------FGFGGGR-------------------------RGRSRTAVRA-------GADLR 121
Query: 383 VILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFI 442
L + F AA G KE+ + ++ C +C G+ CE GT C C GSG T + G F
Sbjct: 122 YDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFS 181
Query: 443 MKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF---------- 492
++TTC C G G I PC+ C G G+ +TV + IP G++ G +R
Sbjct: 182 IRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRG 241
Query: 493 -PIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQP 551
P G +F+T V P + RD +D+H + IS QA LG I V + G ++I
Sbjct: 242 GPPGDLYVFLT--VEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEG-ERELKIPK 298
Query: 552 GTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPNTNGNK 611
GT + KG+ + G G + V+++VP ++KQ++L+ EF +E GNK
Sbjct: 299 GTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFARLESEKIGNK 358
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 230 bits (589), Expect = 1e-69
Identities = 132/417 (31%), Positives = 198/417 (47%), Gaps = 74/417 (17%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY++LG+ +N+ KEIKKAY +LA+KYHPD ++ + A +KF E+SEAY VLSDD K
Sbjct: 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSDDEK 62
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEE 322
RQ YD +G AG + ED + NF+ IF GF
Sbjct: 63 RQRYDQFGH-------AGMD-GFSQEDIFNNINFED----------IFQGFGFGI----- 99
Query: 323 EFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQE 382
I + +GFG + G+
Sbjct: 100 GNIFDMFGFGGGSR------------------------------------HGPQRGADIY 123
Query: 383 VILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSG----YETTTT 438
++I E AA G K++ V CP C G+R E G++ C C G+G T
Sbjct: 124 TEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTIL 183
Query: 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFP----- 493
G + TTC C G G ++ PC NC G G + +T+S+ IP G+E G +R
Sbjct: 184 GQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEM 243
Query: 494 ----IGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEI 549
++V +V P + R+ ++++ E+ IS QA LG T++V I G + ++I
Sbjct: 244 GDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKI 302
Query: 550 QPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPN 606
GT S T ++ G+ + SG G+ +V VK+ VP+ S KQK+L+REF S+ +
Sbjct: 303 PAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLREFASISGD 359
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 230 bits (588), Expect = 2e-69
Identities = 132/448 (29%), Positives = 207/448 (46%), Gaps = 90/448 (20%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY++LG+SK++S EIKKAY +L+KKYHPD NK + A +KF E+SEAYEVLSDD K
Sbjct: 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQK 61
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEE 322
R +YD +G G D+ + F E++F FG
Sbjct: 62 RAQYDQFGHAGPNQGFGGGGFG--GGDFGGGFGF------EDIFSSFFGG---------- 103
Query: 323 EFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQE 382
G + D + DLQ T +T EE
Sbjct: 104 ---------GGRRR-----DPNAPRQGADLQYTMT-------LTFEE------------- 129
Query: 383 VILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYET----TTT 438
A G KE+++ + C C G+ + GT C++C GSG + T
Sbjct: 130 ---------AVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPF 180
Query: 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ 498
G + + TC +C+G+G IK C C G G+ +R+ +++ IP G+++GQ IR G+ +
Sbjct: 181 GRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVS-GEGE 239
Query: 499 ----------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVE 548
++V F+V P + RD DI+ E ++ +QA LG I V ++G + ++
Sbjct: 240 PGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLK 298
Query: 549 IQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPNTN 608
I GT + T+ ++ KG+ N G G +V V++ P +++QK+L+REF +
Sbjct: 299 IPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLREFAELSGEEI 358
Query: 609 GNKDDSNQALSGYRDIFLFFSRLIDFIK 636
+ S FF + K
Sbjct: 359 DEQPSS------------FFDKAKRAFK 374
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 224 bits (573), Expect = 2e-67
Identities = 135/428 (31%), Positives = 190/428 (44%), Gaps = 71/428 (16%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
+KDYY+ILG+ +N++ +EIKKAY LAKKYHPD N D A +KF E++EAYE+LSD K
Sbjct: 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQK 63
Query: 263 RQEYDTWG-ATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTE 321
R +YD +G A + FG GFDF
Sbjct: 64 RAQYDQFGHAAFDPGGFGQGGFGQGG----------------------FGGGGFDFDFG- 100
Query: 322 EEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQ 381
GFG E I G E K G+
Sbjct: 101 --------GFGDIFEDIFG------------------DFFGTGRRRAETGPQK---GADI 131
Query: 382 EVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGY----ETTT 437
L++ FE AA G KE++V + C C+G+ + G+K V C C G+G + T
Sbjct: 132 RYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTP 191
Query: 438 TGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF----- 492
G + TC C G G I PC C G G+ +RR + + IP GI+DGQ I
Sbjct: 192 FGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGE 251
Query: 493 ------PIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLS 546
P G +++ +V P + R+ +++ E I+ + A LGG I + + G
Sbjct: 252 PGIKGGPNGD--LYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKV-K 308
Query: 547 VEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPN 606
I GT + TK ++ KG+ + G G V V IEVP+ +EKQK+L+REF +
Sbjct: 309 FTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLREFEKLSGE 368
Query: 607 TNGNKDDS 614
S
Sbjct: 369 EGTESRKS 376
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 198 bits (504), Expect = 3e-57
Identities = 122/424 (28%), Positives = 194/424 (45%), Gaps = 68/424 (16%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
+KDYY+ILG+S+N++ +EIKKAY LA+KYHPD NK +P A +KF E++EAY+VLSD K
Sbjct: 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEK 60
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEE 322
R+ YD +G S +G + ++ + E++ +F F F
Sbjct: 61 RKLYDQFG--HAAFSGSGQQQQGQE-----GFSDFGGGNIEDILEDVFDI--FGFGDIFG 111
Query: 323 EFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQE 382
A ++E + Q PV G
Sbjct: 112 RRRA-------TRE-----RRKTYQRPVK--------------------------GEDIY 133
Query: 383 VILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFI 442
++I E A G ++V C C GT + G+ C C GSG G F
Sbjct: 134 QTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFR 193
Query: 443 MKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ---- 498
+ TC C G G ++ PC C+G G I++ T+ + IP G+++G +R P G+
Sbjct: 194 ISQTCPTCGGEG-VLREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVP-GKGHAGRF 251
Query: 499 ------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPG 552
+++ +V P + R +++ + +I++++A+LG + V + G V+I PG
Sbjct: 252 GGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG 311
Query: 553 TSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRY--------PSEKQKDLVREFFSVE 604
T KI++P KG+ SGYG V V I+VP+ +K K L++E +
Sbjct: 312 TKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371
Query: 605 PNTN 608
P
Sbjct: 372 PEPE 375
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 192 bits (489), Expect = 3e-55
Identities = 123/412 (29%), Positives = 188/412 (45%), Gaps = 75/412 (18%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
KDYY++LG+ K +S EIKKA+ +LA KYHPD NK + A +KF E++EAY+VLSD K+
Sbjct: 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK 63
Query: 264 QEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEE 323
+YD +G + S D+ F ++F FG
Sbjct: 64 AQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGF------GDIFDSFFGG----------- 106
Query: 324 FIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQEV 383
GFGSS + Q D++ I++T EE
Sbjct: 107 ------GFGSSSR-----RRNGPQRGADIEYT-------INLTFEE-------------- 134
Query: 384 ILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSG----YETTTTG 439
A G KE+ V + C C GT + GT C C G+G T G
Sbjct: 135 --------AVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLG 186
Query: 440 PFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPI-GQDQ 498
F+ TTC C GSG I+ PC C G G+ + R + + +P G++ G I P+ GQ +
Sbjct: 187 SFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVI--PLRGQGE 244
Query: 499 ----------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVE 548
+++ +V P + R DI+ ++ IS ++A LG I V + G+ + E
Sbjct: 245 HGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYE 303
Query: 549 IQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600
+ GT T ++ KG+ NS+G G+ +V V +++P+ + KQK+ + F
Sbjct: 304 VPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALTMF 355
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 192 bits (489), Expect = 4e-55
Identities = 139/454 (30%), Positives = 193/454 (42%), Gaps = 82/454 (18%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQ 264
DYY ILG+SK +S +EIKKAY +LA KYHPD N D A K+F EVSEAYEVLSD KR+
Sbjct: 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61
Query: 265 EYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEF 324
YD +G A G + + E+ R G G +F F
Sbjct: 62 SYDRYGKDGPFAGAGGFGGAGMG-------------NMEDALRTFMGAFGGEFGGGGSFF 108
Query: 325 IANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGS----S 380
G GG+ E F G+ S
Sbjct: 109 ----EGLF----------------------------GGLG---EAFGMRGGPAGARQGAS 133
Query: 381 QEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRC--ELGTKSVRCTYCQGSGYETTTT 438
++V + + FE AA+G KE+ V+ C C G+ G K C C+GSG +
Sbjct: 134 KKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKV--CDRCKGSGQVVQSR 191
Query: 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFP----I 494
G F M +TC C G G I PC C G G+ +R+V + IP G++ G ++
Sbjct: 192 GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDA 251
Query: 495 GQD-----QIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGD-TLSVE 548
GQ+ ++V V P + R D+ E I A LG + + + T +
Sbjct: 252 GQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLT 311
Query: 549 IQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPNTN 608
I G S T +K+ +G N + G G V + +E P+ SE+QK+L+R+F + E N
Sbjct: 312 IPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQFAATEKAEN 371
Query: 609 GNKDDSNQALSGYRDIFLFFSRLIDFIKSFLSSF 642
K S +D IK F S F
Sbjct: 372 FPKKRS----------------FLDKIKGFFSDF 389
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 191 bits (487), Expect = 5e-55
Identities = 128/447 (28%), Positives = 197/447 (44%), Gaps = 106/447 (23%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
+DYY+ILG+SK++S ++IKKAY +LA KYHPD NK +P+A +KF E+SEAY VLSD K
Sbjct: 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEK 62
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFG----------- 311
R +YD +G AG +AED +F ++F FG
Sbjct: 63 RAQYDRFG-------HAGIDNQYSAEDIFRGADFG---GFGDIFEMFFGGGGRRGRMGPR 112
Query: 312 ---DTGFDFKVTEEEFIANKYGFGSSQEV-ILKIDKCLQQVPVDLQLQRTTCIGGISITE 367
D +D +T EE FG +++ + + ++C +TC G
Sbjct: 113 RGSDLRYDLYITLEE-----AAFGVRKDIDVPRAERC------------STCSG------ 149
Query: 368 EEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTY 427
T A+ G CP C GT V T
Sbjct: 150 -----------------------TGAKPGTSPKR------CPTCG------GTGQVTTT- 173
Query: 428 CQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDG 487
+T G F+ TTC C G G I+ PC C G G+ + R +++ +P G + G
Sbjct: 174 ------RSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSG 227
Query: 488 QTIRFPIGQDQ---------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVE 538
++ + +++ V + R DI +E IS +QA LG I V
Sbjct: 228 LRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVP 287
Query: 539 GIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVR 598
+YG + + I PGT +H+ ++ KG+ + G G V V ++ P +++QK+L+R
Sbjct: 288 TLYGK-VKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLR 346
Query: 599 EFFSVEPNTNGNKDDSNQALSGYRDIF 625
EF + +NG ++A + IF
Sbjct: 347 EF---DELSNGKNP--SKAGKKKKGIF 368
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 189 bits (482), Expect = 3e-54
Identities = 121/422 (28%), Positives = 173/422 (40%), Gaps = 79/422 (18%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY++LG+S+++S EIKKAY +LA +YHPD N +P A +KF E +EAYEVL D K
Sbjct: 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEK 62
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEE 322
R YD +G + F S+ D F IFGD
Sbjct: 63 RARYDRFGHAGVNGNGGFG-------------GFSSAEDIFSHFSDIFGDL--------- 100
Query: 323 EFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQE 382
+GF GG + GS
Sbjct: 101 ------FGFSG---------------------------GGSRRG------PRPQAGSDLR 121
Query: 383 VILKIDFETAARGGYKEVDVNV--IDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGP 440
L + F AA+G EV + + C C G+ GT C +C GSG + G
Sbjct: 122 YNLTVSFRQAAKG--DEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGF 179
Query: 441 FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF-------- 492
F + C C G G I PC C G G Q R + + IP G++ G +R
Sbjct: 180 FQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGV 239
Query: 493 ---PIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEI 549
P G ++V V + R D+ + IS QA LG I V + ++++I
Sbjct: 240 HGGPPG--DLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDI 296
Query: 550 QPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPNTNG 609
GT S ++ KGL SS G V V + P +++Q++L+REF ++E
Sbjct: 297 PKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFEALEEEKPL 356
Query: 610 NK 611
K
Sbjct: 357 EK 358
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 186 bits (474), Expect = 3e-53
Identities = 124/409 (30%), Positives = 181/409 (44%), Gaps = 64/409 (15%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDD 260
+ + YY ILG+SK+++ +EIK AY +LA KYHPD NK + + +KF E +EAYE+L D
Sbjct: 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60
Query: 261 TKRQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVT 320
KRQ YD +G A G + + F IFGD G F
Sbjct: 61 KKRQAYDQFGKAGVNAGAGGFGQGAYTD-----------------FSDIFGDFGDIFG-- 101
Query: 321 EEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSS 380
+F G GS GG + GS
Sbjct: 102 --DFFGGGRGGGSG--------------------------GGRRSGPQR--------GSD 125
Query: 381 QEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGP 440
L++ E AA G ++++ ++ C C G+ G+ C C GSG T G
Sbjct: 126 LRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGF 185
Query: 441 FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF-------P 493
F + TTC C G G I PC+ C G G +RRT++I IP G+E G ++ P
Sbjct: 186 FSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGP 245
Query: 494 IG--QDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQP 551
G ++V + + R +D+ IS++QAILG I V I G ++I
Sbjct: 246 NGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPE 305
Query: 552 GTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600
GT S ++ G+ + G G V VKIE+P+ + +Q++L+ EF
Sbjct: 306 GTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEEF 354
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 184 bits (469), Expect = 1e-52
Identities = 127/417 (30%), Positives = 193/417 (46%), Gaps = 74/417 (17%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTD-PNASKKFHEVSEAYEVLSDDTK 262
KDYY+ILG+ +N+S ++IKKA+ ELAKK+HPD + + A +KF E+SEAYEVLSD K
Sbjct: 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRW-NFKSSVDPEELFRKIFG-DTGFDFKVT 320
R++YD G A G++ W NF D ++F +IFG + G DF
Sbjct: 63 RRQYDQTGTVD--FGAGGSN---------FNWDNFTHFSDINDIFNQIFGGNFGSDFFS- 110
Query: 321 EEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSS 380
GFG+ Q + + +D+
Sbjct: 111 ---------GFGNQQST--------RNIDLDIYTN------------------------- 128
Query: 381 QEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGP 440
L I E A G K + +CP C GT + G K + C C G+G + G
Sbjct: 129 ----LDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLITCPTCHGTGQQRIVRGQ 183
Query: 441 ----FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFP-IG 495
+ TTCR C G G + C C+G G + +S+ IP+G D +R G
Sbjct: 184 GFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKG 243
Query: 496 QD------QIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEI 549
Q ++V +V R D++ ++ I+ QA LGG I ++ ++ + +++I
Sbjct: 244 QSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIK-LFREKYNLKI 302
Query: 550 QPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPN 606
GT +KI G+ + N G G V + +EVP+ + KQK+L+REFF ++ N
Sbjct: 303 PEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREFFDIKEN 359
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 179 bits (456), Expect = 9e-51
Identities = 121/410 (29%), Positives = 185/410 (45%), Gaps = 76/410 (18%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+DYYQILG+SK +S ++KKAY +LAK+YHPDT +A KKF E++ AY+VL D+ KR
Sbjct: 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK-DAEKKFKEINAAYDVLKDEQKR 61
Query: 264 QEYDTWGATS---EQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVT 320
YD +G + +Q G + D IFGD DF
Sbjct: 62 AAYDRFGHDAFQNQQSRGGGGNHGGFHPD----------------INDIFGDFFSDF--- 102
Query: 321 EEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSS 380
G S+ + P +++ GS
Sbjct: 103 ----------MGGSR----------RSRPTSSKVR----------------------GSD 120
Query: 381 QEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGP 440
+ L I+ E A G K + + C C G+ E G C C G G G
Sbjct: 121 LKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGF 180
Query: 441 FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ-- 498
F ++ C C G+G IK PC+ C GMG+ ++R +S+ IP G+E+G IR G+ +
Sbjct: 181 FTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHT-GEGEAG 239
Query: 499 --------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQ 550
++V + P Y D +++H + IS A LGG I V I G +++ I
Sbjct: 240 IRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIP 299
Query: 551 PGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600
GT + ++++ KG+ S+ G H+ +EVP+ S++Q++L+ EF
Sbjct: 300 AGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEEF 349
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 176 bits (448), Expect = 3e-49
Identities = 126/445 (28%), Positives = 189/445 (42%), Gaps = 72/445 (16%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY++LG+S+++ EIKKAY +LA KYHPD N + A + F EV+EAYEVLS+D K
Sbjct: 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK 61
Query: 263 RQEYDTWGATSEQMSAA---GASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKV 319
R+ YD +G SAA G D+ D F +FG G
Sbjct: 62 RRRYDQFGHAGVGSSAASGGGPGYGGGGGDFN---------DIFSAFNDMFGG-GARRGG 111
Query: 320 TEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGS 379
+ +G G +R GI G+
Sbjct: 112 GSPFGFEDVFGGGG---------------------RRRRASAGIP-------------GT 137
Query: 380 SQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSG----YET 435
++ LK+ E A+G K + + C +C GT + G + C C GSG
Sbjct: 138 DLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASK 196
Query: 436 TTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQ--TIRFP 493
T G F+ T C C G G +K C C G G TV + +P G++DG T+R
Sbjct: 197 TMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLR-- 254
Query: 494 IGQDQ----------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGD 543
GQ + V + P + R+ D+ ++S +LG + V + G
Sbjct: 255 -GQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDG- 312
Query: 544 TLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF--- 600
+ + I GT T ++IP KG+ + SG G +V V + VP+ S + K+L++E
Sbjct: 313 AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372
Query: 601 FSVEPNTNGNKDDSNQALSGYRDIF 625
+ PN N + +DIF
Sbjct: 373 SHISPN-AHNDKEEKSFFEKAKDIF 396
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 174 bits (442), Expect = 1e-48
Identities = 122/412 (29%), Positives = 179/412 (43%), Gaps = 70/412 (16%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTD-PNASKKFHEVSEAYEVLSDDT 261
+KDYY+ILG+S+N++ +EIK+AY L K++HPD + + A +KF E+ EAYEVLSD
Sbjct: 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQ 62
Query: 262 KRQEYDTWGATSEQMSAAGASR-STTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVT 320
KR YD +G EQ ED FK F IF FD
Sbjct: 63 KRAMYDRFGYVGEQPPYQETESGGGFFEDI-----FKD-------FENIFNRDIFDIFFG 110
Query: 321 EEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSS 380
E + +E QR G I E
Sbjct: 111 ER---------RTQEE------------------QREYARRGEDIRYE------------ 131
Query: 381 QEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGY----ETT 436
+++ G V+ + + CP C GT E G+ V C C G+G +
Sbjct: 132 ----IEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRS 187
Query: 437 TTGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ 496
G F+ + TC C G+G C C G G+ +R ++ IP G+EDG +R G
Sbjct: 188 FFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGG 247
Query: 497 D---------QIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSV 547
+ ++V +V P R+ R SD+ + +I QAILG T+ V G T +
Sbjct: 248 NAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTML 307
Query: 548 EIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVRE 599
+I PGT T ++ KGL N G V+V +E+P+ S +++ L++E
Sbjct: 308 KIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE 359
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 158 bits (401), Expect = 6e-43
Identities = 117/406 (28%), Positives = 177/406 (43%), Gaps = 73/406 (17%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQ 264
DYY++LG+S+ +SA EIK AY +LA KYHPD NK + A++KF +++EAY VLSD KR
Sbjct: 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRA 61
Query: 265 EYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEF 324
YD +G +A GA D F DP ++F ++FG GF
Sbjct: 62 HYDRFG------TAPGA--GMPGGDPFGGMGF----DPMDIFEQLFGGAGF--------- 100
Query: 325 IANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQEVI 384
G G DL+ + IT E+ A +EV
Sbjct: 101 ---GGGRGRRGP----------ARGDDLETEAR-------ITLEQARA-------GEEVE 133
Query: 385 LKIDFETAAR---GGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPF 441
+++D T G E CP CR G +VR T G
Sbjct: 134 VEVDRLTECEHCHGSRTEPGGKPPKTCPTCR------GAGAVR-------AQARTIFGVV 180
Query: 442 IMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF-------PI 494
+ C C G G I PC C G G+ ++ TV + +P+GI++G IR P
Sbjct: 181 ETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPG 240
Query: 495 GQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTS 554
G ++V ++ P R+Q + E I ++A LGG I V + G + +E++PGT
Sbjct: 241 GNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQV-IEVKPGTQ 299
Query: 555 SHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600
++ +G+ +G G V +I VP+ S + ++ + +
Sbjct: 300 HGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEAY 345
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 156 bits (397), Expect = 3e-42
Identities = 84/230 (36%), Positives = 112/230 (48%), Gaps = 16/230 (6%)
Query: 385 LKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTT----GP 440
+ +DFE A G KEV N C C G+ + GT V C C GSG T T G
Sbjct: 126 VNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGM 185
Query: 441 FIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ-- 498
+ TC C G+G IK PCQ C G G Q TVS+ IP G+E GQ IR GQ +
Sbjct: 186 MRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQ-GQGEAG 244
Query: 499 --------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQ 550
++V F+V PS ++ RD S I+ IS QA LG T+ V ++GD ++I
Sbjct: 245 FNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDV-ELKIP 303
Query: 551 PGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600
GT + K ++ KG G G V V I P ++ QK+ ++ F
Sbjct: 304 AGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKAF 353
Score = 104 bits (261), Expect = 4e-24
Identities = 41/78 (52%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+YY LG+SK++S EIKKAY +L+KKYHPD NK +P A +K+ EV EAYE LSD KR
Sbjct: 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKR 62
Query: 264 QEYDTWGATSEQMSAAGA 281
YD +GA G
Sbjct: 63 AAYDQYGAAGANGGFGGG 80
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 156 bits (395), Expect = 5e-42
Identities = 121/437 (27%), Positives = 179/437 (40%), Gaps = 69/437 (15%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY++LG+SK ++ EIKKAY + A +YHPD N D A +KF E +EAY+VLSD K
Sbjct: 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDK 63
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEE 322
R YD +G +A G S S D +F IFG G F
Sbjct: 64 RSRYDQFGHAGVGGAAGGGGFSGEG---------MSMEDIFSMFGDIFGGHGGGF----- 109
Query: 323 EFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQE 382
GFG GG S + GS
Sbjct: 110 ---GGFGGFG----------------------------GGGS-------QQRVFRGSDLR 131
Query: 383 VILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYET----TTT 438
V +K++ + + G K+ V C C GT E S C C+GSG T T
Sbjct: 132 VKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTIL 191
Query: 439 GPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTI-------- 490
G ++TC C+G G IK C+ C G G +++ IP G+ +G +
Sbjct: 192 GTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKGNA 251
Query: 491 --RFPIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVE 548
+ D + V + P RD++D+ +S+ A LGG + V I G V+
Sbjct: 252 GKHGGVNGD-LLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKA-KVK 309
Query: 549 IQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPNTN 608
I+ GT +++ KGL + N G G V+V + +P S+++K + E N
Sbjct: 310 IEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTL-EKMENSDNFK 368
Query: 609 GNKDDSNQALSGYRDIF 625
+ ++ F
Sbjct: 369 PTTSIKEKIFKKFKSFF 385
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 155 bits (393), Expect = 6e-42
Identities = 117/427 (27%), Positives = 192/427 (44%), Gaps = 77/427 (18%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDD 260
+K+KDYY++LG+SK +S +EI++AY +LAK+YHPD NK P+A K E++EA +VL D
Sbjct: 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDK 59
Query: 261 TKRQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVT 320
KR++YD +G + S+ +S ED +F FG D++
Sbjct: 60 DKRKQYDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQ-- 117
Query: 321 EEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSS 380
S++ Q V +D I +T +E + FG
Sbjct: 118 -----------RSTKG---------QSVSLD-----------IYLTFKELL-----FGVD 141
Query: 381 QEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSG--YETTTT 438
+ + L +++ C KC G+ E + C C G+G
Sbjct: 142 KIIEL-----------------DLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNM 184
Query: 439 GPFIMK--TTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFP--- 493
G F + C C+G+G IK C+NC G G+ ++R+ + + IP+GI Q I+
Sbjct: 185 GFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKG 244
Query: 494 -------IGQDQIFVTFQVIPSSRYHR-DQSDIHTEESISISQAILGGTINVEGIYGDTL 545
+ D + + + S + + +DI +IS AILG I ++ + GD +
Sbjct: 245 HASLNNGVNGD-LIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-I 302
Query: 546 SVEIQPGTSSHTKIKIPYKGL-KNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFF--- 601
++ +S+ I I KGL K+ N G + V I VP+ S+K+K+L+ + +
Sbjct: 303 KYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT 362
Query: 602 SVEPNTN 608
S P N
Sbjct: 363 SFNPENN 369
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 149 bits (379), Expect = 7e-40
Identities = 112/438 (25%), Positives = 169/438 (38%), Gaps = 134/438 (30%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQ 264
DYY+ILG+S+++ E+K+AY LA+KYHPD NK +P A +F E++ AYEVLSD R
Sbjct: 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRA 62
Query: 265 EYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFG------------- 311
YD +G AG S + D F ++F F
Sbjct: 63 RYDQFG-------EAGVSGAAGFPDMGDMGGFA------DIFETFFSGFGGAGGQGGRRR 109
Query: 312 --------DTGFDFKVTEEEFIANKYGFGSSQEV-ILKIDKCLQQVPVDLQLQRTTCIGG 362
D +D K+ E I FG +E+ I ++ C TC G
Sbjct: 110 RRGPQRGDDLRYDLKLDFREAI-----FGGEKEIRIPHLETC------------ETCRG- 151
Query: 363 ISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKC-------RGTR 415
+ A+ G C C R TR
Sbjct: 152 ----------------------------SGAKPGTGPT------TCSTCGGAGQVRRATR 177
Query: 416 CELG--TKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQR 473
G T+ C C G+G I+ PC C G G
Sbjct: 178 TPFGSFTQVSECPTCNGTGQ----------------------VIEDPCDACGGQGVKQVT 215
Query: 474 RTVSIPIPQGIEDGQTIRF-----------PIGQDQIFVTFQVIPSSRYHRDQSDIHTEE 522
+ + I IP G++ G +R P G ++V V + RD +I +E
Sbjct: 216 KKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPG--DLYVYLFVKNDPEFRRDGINILSEI 273
Query: 523 SISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGL-KNRNSSGYGHHFVHV 581
IS QAILG T+ V+ + G + I GT +T + + KG+ + N G H + V
Sbjct: 274 KISYLQAILGDTLEVDTVDGPV-ELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITV 332
Query: 582 KIEVPRYPSEKQKDLVRE 599
K+++P S+++++L+ +
Sbjct: 333 KVKIPTRISDEERELLEK 350
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 132 bits (333), Expect = 1e-33
Identities = 72/251 (28%), Positives = 126/251 (50%), Gaps = 16/251 (6%)
Query: 378 GSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGY---- 433
G+ + + ++F+ A G E+++ + C C G+ + GTK C++C GSG
Sbjct: 111 GADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVE 170
Query: 434 ETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFP 493
+ T G + + C +C G+G IK C C G G+ +R+ +++ +P GI+ GQ +R
Sbjct: 171 QNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVS 230
Query: 494 IGQDQ----------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGD 543
GQ + ++V F V P + RD DI+ E ++ Q LG I V + G
Sbjct: 231 -GQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNG- 288
Query: 544 TLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSV 603
+ ++I GT + T ++ KG+ N + G G V V++ P+ +EK+K+L+REF +
Sbjct: 289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREFAGM 348
Query: 604 EPNTNGNKDDS 614
++D
Sbjct: 349 SGGRPDEQNDG 359
Score = 89.7 bits (222), Expect = 3e-19
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDD 260
+ ++DYY++LG+ +N+S E+KKAY +LA+KYHPD NK P+A KF EV EAY+ LSD
Sbjct: 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDP 59
Query: 261 TKRQEYDTWGATSEQMSAAGA 281
K+ YD +G T G
Sbjct: 60 QKKAHYDQFGHTDPNQGFGGG 80
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and
HSP40. The C-terminal region of the DnaJ/Hsp40 protein
mediates oligomerization and binding to denatured
polypeptide substrate. DnaJ/Hsp40 is a widely conserved
heat-shock protein. It prevents the aggregation of
unfolded substrate and forms a ternary complex with both
substrate and DnaK/Hsp70; the N-terminal J-domain of
DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.
Length = 158
Score = 123 bits (312), Expect = 6e-33
Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 12/126 (9%)
Query: 472 QRRTVSIPIPQGIEDGQTIRFPIGQ-DQ---------IFVTFQVIPSSRYHRDQSDIHTE 521
+++T+++ IP G++DGQ +R G+ D ++V +V P + RD +D++ E
Sbjct: 33 EKKTLTVKIPAGVDDGQRLRLR-GEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCE 91
Query: 522 ESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHV 581
IS+++A+LGG I V + G + ++I PGT T +++ KG+ G G +V V
Sbjct: 92 VPISLTEALLGGEIEVPTLGG-KVKLKIPPGTQPGTVLRLKGKGMPRLRGGGRGDLYVEV 150
Query: 582 KIEVPR 587
K+E P+
Sbjct: 151 KVEFPK 156
Score = 28.5 bits (65), Expect = 5.6
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 516 SDIHTEESISISQAILGGTINVEGIYGD--------TLSVEIQPGTSSHTKIKIPYKGLK 567
+D+ + +++ +A G ++ I TL+V+I G ++++ +G
Sbjct: 1 ADLRYDLELTLEEAYFGKEKEIK-IPRKVTRVREKKTLTVKIPAGVDDGQRLRLRGEGDA 59
Query: 568 NRNSSGYGHHFVHVKIEV 585
N G ++V I V
Sbjct: 60 GPNGGPPGD--LYVVIRV 75
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 127 bits (322), Expect = 4e-32
Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 15/230 (6%)
Query: 385 LKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFI-- 442
+++D E A G K+V V+ +C +C G +K V C C G G T F+
Sbjct: 119 MRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQ 178
Query: 443 MKTT--CRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQI- 499
+ T+ C C G G I PC C G G+ RR +++ IP G+ DG IR Q ++
Sbjct: 179 VMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLA-AQGEVG 237
Query: 500 ---------FVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQ 550
+V P + RD D+H S+ + A LG T+ VE I + I
Sbjct: 238 PGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIP 297
Query: 551 PGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600
PGT + I + +G+ + S G G HV++ VP + +L+RE
Sbjct: 298 PGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLREL 347
Score = 97.8 bits (244), Expect = 7e-22
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+DYY +LG+S+N+S EIK+AY +LA++ HPD N D A +KF E+S AYEVLSD KR
Sbjct: 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKR 61
Query: 264 QEYDTWGATSEQMSAAGA 281
+ D G E G
Sbjct: 62 RIVDLGGDPLESAGGGGG 79
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 113 bits (284), Expect = 2e-30
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQ 264
DYY+ILG+ +++S +EIKKAY +LA KYHPD N DP A +KF E++EAYEVLSD KR
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60
Query: 265 EYD 267
YD
Sbjct: 61 IYD 63
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 121 bits (305), Expect = 5e-30
Identities = 106/404 (26%), Positives = 170/404 (42%), Gaps = 75/404 (18%)
Query: 206 YYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQE 265
YY+IL + K+S+ + IKK+Y +LA KYHPD N D A +KF ++EAY VLSD+ KR
Sbjct: 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64
Query: 266 YDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFI 325
YD +G + ++ AGAS+S F F D G F
Sbjct: 65 YDRYG--KKGLNQAGASQSD--------------------FSDFFEDLG--------SFF 94
Query: 326 ANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQEVIL 385
+ +GFG+ S ++ IA Y +
Sbjct: 95 EDAFGFGARG----------------------------SKRQKSSIAPDY------LQTI 120
Query: 386 KIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVR-CTYCQGSGYETTTTGPFIMK 444
++ F+ A G K + V +C C GT + K++ C C G G G
Sbjct: 121 ELSFKEAVFGCKKTIKVQYQSVCESCDGTGAK--DKALETCKQCNGQGQVFMRQGFMSFA 178
Query: 445 TTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTI-------RFPIGQ- 496
TC C G G IK PCQ C G ++ + IP+GI+D + + G+
Sbjct: 179 QTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKR 238
Query: 497 DQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSH 556
+++ +V + R+ D+ E + + LG TI V + GD L ++I
Sbjct: 239 GDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDR 298
Query: 557 TKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600
+G+K+ SS G V +++ P+ +++Q++L+ +
Sbjct: 299 QTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEKL 342
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 115 bits (290), Expect = 5e-28
Identities = 108/399 (27%), Positives = 168/399 (42%), Gaps = 77/399 (19%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY+ILG+SK +S EIKKAY ++A KYHPD NK + A F E +EAYEVL DD K
Sbjct: 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNK 61
Query: 263 RQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEE 322
R +YD +G T+ + S F D E F IF D+ F ++
Sbjct: 62 RAQYDRFGHTAFEGGGGFEGFSG---------GFSGFSDIFEDFGDIF-DSFFTGNRGQD 111
Query: 323 EFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQE 382
+ N+ + DL Q I I+ E + Y G
Sbjct: 112 K---NRK----------------HEKGQDLTYQ-------IEISLE----DAY-LGYKNN 140
Query: 383 VILKIDFETAARGGYKEVDVNVIDICPKCRGT-RCELGTKSVR----CTYCQGSGYETTT 437
+ + + + G K IC C G+ R G R C C G+G
Sbjct: 141 INITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGK---- 196
Query: 438 TGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF----- 492
I+ C+ C G G K + T+ + IP GI+D Q I+
Sbjct: 197 ----IISNPCKSCKGKGSLKK--------------KETIELKIPAGIDDNQQIKMRGKGS 238
Query: 493 --PIGQD--QIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVE 548
P Q +++ + P + R+ D++ IS +QA LG I ++ I + ++
Sbjct: 239 VNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIK 298
Query: 549 IQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPR 587
I GT + +I I +G+ ++ +G+ + +KI+ P+
Sbjct: 299 IPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPK 337
Score = 30.3 bits (68), Expect = 2.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 541 YGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDL 596
+T+ ++I G + +IK+ KG N ++ YG ++ + I+ + KDL
Sbjct: 213 KKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDL 268
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 110 bits (278), Expect = 3e-26
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 13/219 (5%)
Query: 378 GSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT 437
G+ E +DF AA+G + + C C G+ GT C C GSG +
Sbjct: 146 GNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRN 205
Query: 438 TGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQD 497
G F C C G+G I+ PC+ C G G + RT+++ IP G+EDGQ IR GQ
Sbjct: 206 QGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLA-GQG 264
Query: 498 Q----------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSV 547
+ ++VT V P + RD D+ +S ++ LG T++V + G + V
Sbjct: 265 EAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDG-PVGV 323
Query: 548 EIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVP 586
++ GT+ +++ +G+ R S G G V VK+ VP
Sbjct: 324 KVPAGTADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVP 361
Score = 97.1 bits (242), Expect = 1e-21
Identities = 37/64 (57%), Positives = 51/64 (79%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
KD+Y+ LG+S ++SA+EIKKAY +LA++ HPD N DP A ++F VSEA++VLSD KR
Sbjct: 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68
Query: 264 QEYD 267
+EYD
Sbjct: 69 KEYD 72
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 107 bits (268), Expect = 4e-25
Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 14/234 (5%)
Query: 378 GSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT 437
G+ E + + F A G + + CP C GT + GT C C G+G +
Sbjct: 139 GADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRN 198
Query: 438 TGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRF----- 492
+G F + C C G G+ PC C G G+ RT+ + IP G+ DGQ IR
Sbjct: 199 SGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGA 258
Query: 493 ------PIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLS 546
P G ++V V P + R ++ ++ +A LG + V + G ++
Sbjct: 259 PGERGGPAG--DLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVT 316
Query: 547 VEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREF 600
V++ PGT + +++ KG R G V V++ VP+ S K ++ + F
Sbjct: 317 VKLPPGTPNGRVLRVRGKG-AVRKDGTRGDLLVTVEVAVPKDLSGKAREALEAF 369
Score = 104 bits (260), Expect = 6e-24
Identities = 38/64 (59%), Positives = 53/64 (82%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
KDYY++LG+ K+++ EIKKAY +LA++YHPD NK D A ++F E+SEAY+VLSD+ KR
Sbjct: 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKR 68
Query: 264 QEYD 267
+EYD
Sbjct: 69 KEYD 72
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 97.2 bits (243), Expect = 8e-25
Identities = 35/55 (63%), Positives = 43/55 (78%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSD 259
DYY ILG+ ++S +EIKKAY +LA KYHPD N DP A +KF E++EAYEVLSD
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 103 bits (258), Expect = 2e-24
Identities = 50/111 (45%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
KDYY ILG+ KN+S EIKKA+ +LA+KYHPD NK P A +KF E++EAY VLSD KR
Sbjct: 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKR 62
Query: 264 QEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTG 314
+ YDT+G T+ G +N D + F+++FG G
Sbjct: 63 RIYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVG---DFSDFFQQLFGGRG 110
Score = 55.3 bits (133), Expect = 3e-08
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 474 RTVSIPIPQGIEDGQTIRFP----IGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQA 529
+S+ IP G+ +GQ IR G D +++ +++P + + D++ + A
Sbjct: 156 ERLSVRIPPGVREGQVIRLAGKGRQGGD-LYLVVRLLPHPVFRLEGDDLYATVDVPAPIA 214
Query: 530 ILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYP 589
++GG + V + G + V I P T + K+++ KG R +G G + V+I +P P
Sbjct: 215 VVGGKVRVMTLDG-PVEVTIPPRTQAGRKLRLKGKGWP-RGPAGRGDQYAEVRITIPTRP 272
Query: 590 SEKQKDLVR---EFFSVEP 605
+ +++ L + E + V
Sbjct: 273 TPEEERLYKQLAELYKVRA 291
Score = 34.5 bits (79), Expect = 0.14
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 510 RYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNR 569
R R D+ E +++ +A GG VE + G+ LSV I PG I++ KG +
Sbjct: 124 RRARKGRDLEAELPLTLEEAYRGGEKVVE-VAGERLSVRIPPGVREGQVIRLAGKGRQG- 181
Query: 570 NSSGYGHHFVHVKIE 584
G ++ V++
Sbjct: 182 -----GDLYLVVRLL 191
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 95.0 bits (237), Expect = 4e-24
Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNK-TDPNASKKFHEVSEAYEVLSDDTK 262
DYY+ILG+ +++S EIKKAY +LA KYHPD N A +KF E++EAYEVLSD K
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain. This family consists of
the C terminal region form the DnaJ protein. Although
the function of this region is unknown, it is always
found associated with pfam00226 and pfam00684. DnaJ is a
chaperone associated with the Hsp70 heat-shock system
involved in protein folding and renaturation after
stress.
Length = 81
Score = 88.0 bits (219), Expect = 3e-21
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 517 DIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGL-KNRNSSGYG 575
D++ IS+ +A+LGGT+ V + G + ++I GT K++I KG+ N+ +G G
Sbjct: 1 DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRG 60
Query: 576 HHFVHVKIEVPRYPSEKQKDL 596
V + +++P+ S +QK+L
Sbjct: 61 DLIVTLNVKIPKKLSSEQKEL 81
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 91.8 bits (228), Expect = 2e-20
Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 18/116 (15%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
KDYY I+G+ K IK AY LA+KYHPD +K +P+A +F EV+EA+EVLSD+ +R
Sbjct: 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRR 62
Query: 264 QEYDT-WGATSE----QMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTG 314
EYD W ++ + G +S AED+ +++F IFG
Sbjct: 63 AEYDQLWQHRNDPQFNRQFQHGDGQSFNAEDF------------DDIFSSIFGQHA 106
Score = 46.7 bits (111), Expect = 2e-05
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
Query: 455 IYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQ----------DQIFVTFQ 504
I P N GM + +T+++ IP G+ +GQ IR GQ +++
Sbjct: 139 ISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLK-GQGTPGENGGPNGDLWLVIH 197
Query: 505 VIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYK 564
+ P + D+ ++ +A LG + V + L + I PG+ + ++++ K
Sbjct: 198 IAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESIL-LTIPPGSQAGQRLRVKGK 256
Query: 565 GLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPNTNGNKDDSNQ 616
GL ++ + G + +KI +P P EK L ++ + + + KD
Sbjct: 257 GLVSKKQT--GDLYAVLKIVMPPKPDEKTAALWQQLADAQSSFDPRKDWGKA 306
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 93.3 bits (232), Expect = 3e-20
Identities = 97/447 (21%), Positives = 165/447 (36%), Gaps = 107/447 (23%)
Query: 192 FHTSPSLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVS 251
F + + Y++L +SK+ + EIKKAY +LA K+HPD DP +KF E+S
Sbjct: 16 FDGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-DP---EKFKEIS 71
Query: 252 EAYEVLSDDTKRQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFG 311
AYEVLSD KR+ YD +G + A D +LF IFG
Sbjct: 72 RAYEVLSDPEKRKIYDEYGEEGLEGGEQPA-------------------DASDLFDLIFG 112
Query: 312 DTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFI 371
K G E I + + V L+ + ++I ++
Sbjct: 113 G-------------GRKPGGKKRGEDI------VSHLKVTLEQIYNGAMRKLAINKDVIC 153
Query: 372 ANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKC--RGTRCELGTKS------- 422
AN G G ++ + C C +G R ++
Sbjct: 154 ANCEGHGGPKDAFVD---------------------CKLCNGQGIRVQIRQMGSMIHQTQ 192
Query: 423 VRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQ 482
C C G G C+ CSG G+ R+ + + I +
Sbjct: 193 STCNSCNGQGKI------IPESKKCKNCSGKGVK--------------KTRKILEVNIDK 232
Query: 483 GIEDGQTIRF---------PIGQDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAILGG 533
G+ + I F I + +F+ + P + R+ D+ + IS+ +A+ G
Sbjct: 233 GVPNQHKITFHGEADEKPNEIPGNVVFILNEK-PHDTFKREGGDLFITKKISLYEALTGF 291
Query: 534 TINVEGIYGDTLSVEIQPG-TSSHTKIK-IPYKGLKN-RNSSGYGHHFVHVKIEVP--RY 588
+ + G L V PG IK I +G+ ++ G+ +V ++ P R
Sbjct: 292 VFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRK 351
Query: 589 PSEKQKDLVREFFSVEPNTNGNKDDSN 615
+ ++K++++ F P + +D+
Sbjct: 352 FTNEEKEILKSLFPQNPEEKKDLEDTE 378
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 90.3 bits (223), Expect = 1e-18
Identities = 35/68 (51%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY++LGI +++ +EIKKA+ +LAKKYHPD NK P+A+ F E++EA +VLS+ K
Sbjct: 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK-APDAASIFAEINEANDVLSNPKK 59
Query: 263 RQEYDTWG 270
R YD +G
Sbjct: 60 RANYDKYG 67
Score = 39.8 bits (92), Expect = 0.005
Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 11/134 (8%)
Query: 457 IKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIR---------FPIGQDQIFVTFQVIP 507
IK+ DG ++ +++ I I I F G + V F+VIP
Sbjct: 678 IKYTRHTVDGNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGCGDLKVVFKVIP 737
Query: 508 SSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLK 567
S+ + +H + A GG I+V G +V I G + ++ GL
Sbjct: 738 SNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPN-KLFNVRIPGGIKVNDQVIFKDLGLT 796
Query: 568 NRNSSGYGHHFVHV 581
+ G VH+
Sbjct: 797 -KTKYDKGSLIVHL 809
>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40.
Central/middle or CxxCxGxG-motif containing domain of
DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are
highly conserved and play crucial roles in protein
translation, folding, unfolding, translocation, and
degradation. They act primarily by stimulating the
ATPase activity of Hsp70s, an important chaperonin
family. Hsp40 proteins are characterized by the presence
of an N-terminal J domain, which mediates the
interaction with Hsp70. This central domain contains
four repeats of a CxxCxGxG motif and binds to two Zinc
ions. It has been implicated in substrate binding.
Length = 65
Score = 79.6 bits (197), Expect = 2e-18
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 408 CPKCRGTRCELGTKSVRCTYCQGSGYETTTT----GPFIMKTTCRYCSGSGIYIKFPCQN 463
CP C G+ + GTK C C GSG G F +TTC C G+G IK PC
Sbjct: 1 CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60
Query: 464 CDGMG 468
C G G
Sbjct: 61 CKGKG 65
Score = 26.8 bits (60), Expect = 6.1
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 5/27 (18%)
Query: 407 ICPKCRGTRCELGTK-SVRCTYCQGSG 432
CP C GT G C C+G G
Sbjct: 43 TCPTCGGT----GKIIKDPCPKCKGKG 65
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 83.3 bits (205), Expect = 5e-18
Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASK-KFHEVSEAYEVLSDD 260
DYY+ILG+ N+S +EIKKAY +LA KYHPD N DP ++ KF E++EAYE+LSD
Sbjct: 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDP 63
Query: 261 TKRQEYDT-------WGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDT 313
+R EYD G + + +A S W K + +
Sbjct: 64 ERRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLSR 123
Query: 314 GFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQ 346
G A++ S + L
Sbjct: 124 GLSGLAAALSLFADEAALRSGSLRRRDLAANLA 156
>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain. The central
cysteine-rich (CR) domain of DnaJ proteins contains four
repeats of the motif CXXCXGXG where X is any amino acid.
The isolated cysteine rich domain folds in zinc
dependent fashion. Each set of two repeats binds one
unit of zinc. Although this domain has been implicated
in substrate binding, no evidence of specific
interaction between the isolated DNAJ cysteine rich
domain and various hydrophobic peptides has been found.
Length = 65
Score = 73.2 bits (180), Expect = 3e-16
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 408 CPKCRGTRCELGTKSVRCTYCQGSGYETTTT----GPFIMKTTCRYCSGSGIYIKFPCQN 463
CP C GT + G K C C GSG G F M+ TC C G+G IK PC+
Sbjct: 1 CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60
Query: 464 CDGMG 468
C G G
Sbjct: 61 CKGKG 65
Score = 27.0 bits (60), Expect = 5.3
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 447 CRYCSGSGIY--IKFP-CQNCDGMGQNIQRR 474
C +C G+G K C C+G GQ ++R+
Sbjct: 1 CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQ 31
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 63.1 bits (153), Expect = 2e-10
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 197 SLSNLKRK--DYYQILGISKNSSAKEIKKAYYELAKKYHPD-----TNKTDPNASKKFHE 249
+L R+ D Y+ILGI +++S ++IKK Y L+ K+HPD N+ +K+
Sbjct: 89 TLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKT 148
Query: 250 VSEAYEVLSDDTKRQEYDTWG 270
+++AY +L+D +R+ Y +G
Sbjct: 149 ITKAYGLLTDKKRRENYLNYG 169
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 55.9 bits (134), Expect = 5e-08
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 206 YYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQE 265
+Y ILG+ N+ KEI + Y++LA+ Y+P ++ KF +++EAY++L D K++
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYP-PKRSGNEGFHKFKKINEAYQILGDIDKKKM 633
Query: 266 YDTWG 270
Y+ +G
Sbjct: 634 YNKFG 638
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 47.5 bits (114), Expect = 8e-06
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 187 RHSAHFHTSPSLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPD 235
+ + + L+ D Y++LG+S++ +EIK+AY +L ++HPD
Sbjct: 185 QGGGGYQQAQRGPTLE--DAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 45.4 bits (107), Expect = 6e-05
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 185 YLRHSAHFHTSPSLSNLKRKDYYQILGISK---NSSAKEIKKAYYELAKKYHPDTNKTDP 241
Y R N K+ D Y +LG+SK + +I KA+ + KYHPD
Sbjct: 32 YTREDF--------KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG 83
Query: 242 NASKK--FHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASRSTTAEDYMHRW 294
N F + +A EVL D R +YD +++ + R T +++ W
Sbjct: 84 NKGCDEFFKLIQKAREVLGDRKLRLQYD----SNDFDADVPPPRIYTPDEFFEVW 134
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 42.6 bits (100), Expect = 1e-04
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 205 DYYQILGISK--NSSAKEIKKAYYELAKKYHPDTNKTDPNASKKF---HEVSEAYEVLSD 259
+Y+Q+LG+ + N K ++K Y+ + KYHPD KT + E++ AY L D
Sbjct: 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKD 62
Query: 260 DTKRQEY 266
KR EY
Sbjct: 63 ALKRAEY 69
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational
modification, protein turnover, chaperones].
Length = 174
Score = 39.2 bits (92), Expect = 0.002
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
Query: 219 KEIKKAYYELAKKYHPDTNKTDPNASKK-----FHEVSEAYEVLSDDTKRQEYDTWGATS 273
+K Y EL + YHPD A ++ EV+ AY+ L D R EY
Sbjct: 18 DALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY------- 70
Query: 274 EQMSAAGASRSTTAEDYMHRWNF 296
++ A + F
Sbjct: 71 -LLALADGLDHAKERQTLRDIAF 92
Score = 38.9 bits (91), Expect = 0.003
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 200 NLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPD--TNKTDP-----NASKKFHEVSE 252
L R+D ++LG+ + IKKAY +L + HPD K +K E+ E
Sbjct: 109 QLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQE 168
Query: 253 AYE 255
AYE
Sbjct: 169 AYE 171
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 38.7 bits (90), Expect = 0.002
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 219 KEIKKAYYELAKKYHPDTNKT---DPNASKKFHEVSEAYEVLSDDTKRQEY 266
++K Y +L +YHPD + AS++ +++AY L D +R EY
Sbjct: 6 SRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 34.8 bits (80), Expect = 0.028
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 200 NLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVL 257
+ + + Y+IL IS +S + I++A+ +L + HPD + ASK V+EA ++L
Sbjct: 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASK----VNEAKDLL 114
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 31.9 bits (73), Expect = 0.61
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 12/68 (17%)
Query: 224 AYYELAKKYHPDTNKTDPNASKKFH-----EVSEAYEVLSDDTKRQEY-------DTWGA 271
AY + + HPD +A K+ +EAY+ L D KR Y D
Sbjct: 28 AYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQAE 87
Query: 272 TSEQMSAA 279
+ M A
Sbjct: 88 NNTAMPPA 95
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 31.8 bits (73), Expect = 0.64
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 225 YYELAKKYHPDTNKTDPNASK-----KFHEVSEAYEVLSDDTKRQEY 266
Y EL +++HPD + + +++AY+ L KR EY
Sbjct: 24 YQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEY 70
>gnl|CDD|199910 cd10748, anti-TRAP, anti-TRAP (AT) protein specific to Bacilli. In
Bacillus subtilis and related bacteria, AT binds to the
TRAP protein, (tryptophan-activated trp RNA-binding
attenuation protein), effectively disrupting interaction
of TRAP with mRNAs. Upon binding of tryptophan, TRAP
(which forms a complex of 11 identical subunits)
interacts with a specific location in the leader RNA and
blocks translation of the tryptophan biosynthetic
operon. AT, in turn, recognizes the tryptophan-activated
TRAP complex and prevents RNA binding. AT is expressed
in response to high levels of uncharged tryptophan tRNA.
AT contains a zinc-binding motif that closely resembles
the zinc-binding motifs in the zinc-finger region of
DnaJ/Hsp40. AT has been shown to form homo-dodecameric
assemblies, and can actually do that in two different
relative orientations, resulting in two different
dodecamers. Recent data suggest that the trimeric form
of AT may be the biologically relevant active complex.
Length = 52
Score = 28.7 bits (64), Expect = 1.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 443 MKTTCRYCSGSGIYIKFPCQNCDGMG 468
++ TC C +G PC C G G
Sbjct: 7 LEVTCPKCERAGEEEGTPCPKCSGKG 32
>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains
DnaJ-type Zn finger domain [DNA replication,
recombination, and repair].
Length = 715
Score = 32.0 bits (73), Expect = 1.1
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 355 QRTTCI-----GGISITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICP 409
C G I + EEE G G S + K + R I CP
Sbjct: 1 MIKKCPECGGKGKIVVGEEECPVCH-GTGFSDDFDPKGVANLS-RETVDLFASFEI-PCP 57
Query: 410 KCRGTRCELGTKSVR--CTYCQGSGY 433
KCRG GT +V C C G+G
Sbjct: 58 KCRGK----GTVTVYDTCPECGGTGK 79
>gnl|CDD|193510 cd03890, M20_pepD, M20 Peptidase D has specificity for
beta-alanyl-L-histidine dipeptide. Peptidase M20
family, Peptidase D (PepD, Xaa-His dipeptidase; X-His
dipeptidase; aminoacylhistidine dipeptidase; dipeptidase
D; Beta-alanyl-histidine dipeptidase; pepD g.p.
(Escherichia coli); EC 3.4.13.3) subfamily. PepD is a
cytoplasmic enzyme family characterized by its unusual
specificity for the dipeptides beta-alanyl-L-histidine
(L-carnosine or beta-Ala-His) and gamma-Aminobutyryl
histidine (L-homocarnosine or gamma-amino-butyl-His).
Homocarnosine has been suggested as a precursor for the
neurotransmitter gamma-aminobutyric acid (GABA), acting
as a GABA reservoir, and may mediate antiseizure effects
of GABAergic therapies. It has also been reported that
glucose metabolism could be influenced by L-carnosine.
PepD also includes a lid domain that forms a homodimer;
however, the physiological function of this extra domain
remains unclear.
Length = 474
Score = 31.6 bits (73), Expect = 1.3
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 212 ISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+ +K EL + + TDP + EV EVLS +
Sbjct: 259 AVDAEDVEALKALIKELEAELKEEYAATDPGLKIEVEEVEAPKEVLSKEDTD 310
>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional.
Length = 111
Score = 29.8 bits (67), Expect = 1.5
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 419 GTKSVRCTYCQGSGYETTTTGPF-IMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRR 474
GT + C +C GSG T G + C C G+G C C G G IQ R
Sbjct: 49 GTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAG---SLTCTTCQGSG--IQPR 100
>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin
of TRX) subfamily; PICOT is a protein that interacts
with protein kinase C (PKC) theta, a calcium independent
PKC isoform selectively expressed in skeletal muscle and
T lymphocytes. PICOT contains an N-terminal TRX-like
domain, which does not contain the catalytic CXXC motif,
followed by one to three glutaredoxin domains. The
TRX-like domain is required for interaction with PKC
theta. PICOT inhibits the activation of c-Jun N-terminal
kinase and the transcription factors, AP-1 and NF-kB,
induced by PKC theta or T-cell activating stimuli.
Length = 97
Score = 29.2 bits (66), Expect = 1.7
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 219 KEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEV 256
K++ + + ELAK+ P A ++ E+SE +E+
Sbjct: 30 KQMNQVFEELAKEAFPSVLFLSIEA-EELPEISEKFEI 66
>gnl|CDD|227502 COG5175, MOT2, Transcriptional repressor [Transcription].
Length = 480
Score = 31.2 bits (70), Expect = 1.8
Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 232 YHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAG----ASRSTTA 287
+H +T T + S+ + L+ + + YD G + S + +
Sbjct: 335 HHTETTTTTNTNATSHSHGSKKKQSLAAEEYKDPYDALGNAARLHSLSNYQKRPISIKSD 394
Query: 288 EDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIAN 327
E+ +W+ KS +I D+ + +F+ +
Sbjct: 395 EETYKKWDKKSDNTLANKLVEILAIKPIDYTASVVQFLQS 434
>gnl|CDD|221190 pfam11727, ISG65-75, Invariant surface glycoprotein. This family
is found in Trypanosome species, and appears to be one
of two invariant surface glycoproteins, ISG65 and ISG75.
that are found in the mammalian stage of the parasitic
protozoan. the sequence suggests the two families are
polypeptides with N-terminal signal sequences,
hydrophilic extracellular domains, single trans-membrane
alpha-helices and short cytoplasmic domains. they are
both expressed in the bloodstream form but not in the
midgut stage. Both polypeptides are distributed over the
entire surface of the parasite.
Length = 286
Score = 30.6 bits (69), Expect = 2.1
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 12/68 (17%)
Query: 230 KKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASRSTTAED 289
K P + D A K+ + + DT TSE M +A
Sbjct: 172 AKSSP-SQNCDGIAFKRHYSDGGRNVIDCSDTGVDRVFYTDVTSEAMKSA---------- 220
Query: 290 YMHRWNFK 297
+ +W
Sbjct: 221 -LEKWEKV 227
>gnl|CDD|238185 cd00304, RT_like, RT_like: Reverse transcriptase (RT, RNA-dependent
DNA polymerase)_like family. An RT gene is usually
indicative of a mobile element such as a retrotransposon
or retrovirus. RTs occur in a variety of mobile
elements, including retrotransposons, retroviruses,
group II introns, bacterial msDNAs, hepadnaviruses, and
caulimoviruses. These elements can be divided into two
major groups. One group contains retroviruses and DNA
viruses whose propagation involves an RNA intermediate.
They are grouped together with transposable elements
containing long terminal repeats (LTRs). The other
group, also called poly(A)-type retrotransposons,
contain fungal mitochondrial introns and transposable
elements that lack LTRs.
Length = 98
Score = 28.1 bits (63), Expect = 4.4
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 116 TKKCFYSIQTSPQGSVGSGLMKTLVLQKVLTMILSLKAVIR 156
K F SI PQGS S + L ++K+ IL I
Sbjct: 3 VKSFFTSIPL-PQGSPLSPALANLYMEKLEAPILKQLLDIT 42
>gnl|CDD|224086 COG1164, COG1164, Oligoendopeptidase F [Amino acid transport and
metabolism].
Length = 598
Score = 30.0 bits (68), Expect = 4.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 217 SAKEIKKAYYELAKKYHPDTNKTDPNAS 244
+A+E+ + Y EL K+Y+ D K D +
Sbjct: 477 TAEELNELYLELQKEYYGDAVKLDELSG 504
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 29.8 bits (67), Expect = 6.8
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 411 CRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIY 456
C GT+ G ++ E P I KT C C G G+Y
Sbjct: 1277 CLGTQQHPGLNAL-LMEAMLMESEEPLPPPLISKTPCNQCQGLGVY 1321
>gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha.
Length = 808
Score = 29.1 bits (65), Expect = 8.6
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 304 ELFRKIFGDTGFDFKVTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGI 363
+LFR I G F F T E A + G S ++ I ID+ +Q + + I
Sbjct: 463 QLFRSIDGGAAFGFPETPEA--AAEAGLVSGKDNI--IDRSIQDAYIHAIRRAKDFI--- 515
Query: 364 SITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPK 410
+I N+Y GSS F +A G K D+N + + PK
Sbjct: 516 ------YIENQYFLGSS--------FAWSA-DGIKPEDINALHLIPK 547
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain. This
presumed domain appears to be related to other
Myb/SANT-like DNA binding domains. In particular
pfam10545 seems most related. This family is greatly
expanded in plants and appears in several proteins
annotated as transposon proteins.
Length = 84
Score = 26.8 bits (60), Expect = 8.9
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 251 SEAYEVLSDDTKRQEYDTWGATSEQMSAAGASRS 284
E + L ++ W +E+M+ G +RS
Sbjct: 17 GERLDSLFQRGTKRNKHVWEEIAEKMAERGYNRS 50
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 28.1 bits (63), Expect = 9.2
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 208 QILGISKN--SSAKEIKKAYYELAKKYHPD 235
+LG+ ++ + ++KAY ++HPD
Sbjct: 9 DLLGLPRSAWGNLPLMRKAYLRKCLEFHPD 38
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.397
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,211,592
Number of extensions: 3107585
Number of successful extensions: 3094
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2898
Number of HSP's successfully gapped: 114
Length of query: 644
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 541
Effective length of database: 6,369,140
Effective search space: 3445704740
Effective search space used: 3445704740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)