RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11884
(644 letters)
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 215 bits (550), Expect = 8e-65
Identities = 74/415 (17%), Positives = 138/415 (33%), Gaps = 131/415 (31%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
KDYY ILG+ K IK AY LA+KYHPD +K + +A KF +++EA+EVL D+ +R
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRR 86
Query: 264 QEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEE 323
EYD ++ + DF ++
Sbjct: 87 AEYDQLWQHRNDPGFGRQRQTHE-----------------------QSYSQQDF----DD 119
Query: 324 FIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFGSSQEV 383
++ +G + Q G E+
Sbjct: 120 IFSSMFGQQAHQ-------------------------RR---------RQHAARGHDLEI 145
Query: 384 ILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIM 443
+ + E + + N G
Sbjct: 146 EVAVFLEETLAEQTRTISYN--LPVYNVFGM----------------------------- 174
Query: 444 KTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ----- 498
++ +T+++ IP G+ DGQ IR GQ
Sbjct: 175 ------------------------IESETPKTLNVKIPAGVVDGQRIRLK-GQGTPGENG 209
Query: 499 -----IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGT 553
+++ + P + ++ ++ +A LG + V + ++ + + PG+
Sbjct: 210 GPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE-SILLTVPPGS 268
Query: 554 SSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPNTN 608
+ +++I KGL ++ G F +KI +P P EK ++L ++ + E + +
Sbjct: 269 QAGQRLRIKGKGLVSKT--HTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFD 321
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 165 bits (420), Expect = 4e-47
Identities = 64/236 (27%), Positives = 103/236 (43%), Gaps = 19/236 (8%)
Query: 378 GSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTT 437
G + + E +G ++ +N +C +C G + G +CT C G G + T
Sbjct: 11 GKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVT 69
Query: 438 --TGPFI--MKTTCRYCSGSG--IYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIR 491
GP I +T C C G+G I K C++C+G +R+ + + + G++DGQ I
Sbjct: 70 RQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIV 129
Query: 492 FPIGQ-DQ--------IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYG 542
F G+ DQ + P + RD D+ E I + AI GG +E + G
Sbjct: 130 FK-GEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSG 188
Query: 543 DTLSVEIQPG--TSSHTKIKIPYKGLKNRNSSGYGHHFVHVKIEVPRYPSEKQKDL 596
D L V I PG + + I KG+ GYG+ + I+ P +++L
Sbjct: 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENL 244
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 131 bits (331), Expect = 1e-36
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 193 HTSPSLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSE 252
S + R Y +LG+ ++ +IK AYY YHPD N A+++F +S+
Sbjct: 6 SGSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQ 65
Query: 253 AYEVLSDDTKRQEYDTWGATSEQMSAAGAS 282
AY VL T R++YD + E + G+
Sbjct: 66 AYVVLGSATLRRKYDRGLLSDEDLRGPGSG 95
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 126 bits (319), Expect = 4e-35
Identities = 47/72 (65%), Positives = 60/72 (83%)
Query: 199 SNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLS 258
S+ DYYQILG+ +N+S KEIKKAYY+LAKKYHPDTNK DP A +KF +++EAYEVLS
Sbjct: 2 SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61
Query: 259 DDTKRQEYDTWG 270
D+ KR++YD +G
Sbjct: 62 DEVKRKQYDAYG 73
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 121 bits (306), Expect = 2e-33
Identities = 36/84 (42%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 187 RHSAHFHTSPSLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKK 246
S+ S S + D Y++LG+S+ +S +IKKAY +LA+++HPD NK DP A +
Sbjct: 3 SGSSGILQSLSALD---FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDR 58
Query: 247 FHEVSEAYEVLSDDTKRQEYDTWG 270
F ++S+AYE+LS++ KR YD +G
Sbjct: 59 FIQISKAYEILSNEEKRTNYDHYG 82
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 123 bits (310), Expect = 4e-33
Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 197 SLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN------ASKKFHEV 250
++ + +KD+Y ILG +++ ++K+ Y +L YHPD TD +KF E+
Sbjct: 3 AVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEI 62
Query: 251 SEAYEVLSDDTKRQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIF 310
+A+++L ++ ++EYD + + E+ + +
Sbjct: 63 DQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEE------MSWNEGDHSFYLSCR 116
Query: 311 GDTGFDFKVTEEEF 324
G + V+++E
Sbjct: 117 C--GGKYSVSKDEA 128
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 120 bits (302), Expect = 2e-32
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDT 261
+DYY +LG + SS ++I + A + HPD + +P A + F ++ +A E+L+++
Sbjct: 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEE 77
Query: 262 KRQEYDTWGATSEQMSAAGAS 282
R YD W + M
Sbjct: 78 SRARYDHWRRSQMSMPFQQWE 98
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 118 bits (299), Expect = 2e-32
Identities = 36/67 (53%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
KDYYQ LG+++ +S +EIK+AY A +YHPD NK +P A +KF E++EAY+VLSD KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 264 QEYDTWG 270
+ +D +G
Sbjct: 62 EIFDRYG 68
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 118 bits (298), Expect = 2e-32
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 199 SNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLS 258
S+ DYY+ILG+S+ +S +++KKAY LA K+HPD N P A++ F + AY VLS
Sbjct: 2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLS 60
Query: 259 DDTKRQEYDTWG 270
+ KR++YD +G
Sbjct: 61 NPEKRKQYDQFG 72
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 118 bits (299), Expect = 4e-32
Identities = 48/110 (43%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+DYY+ILG+SK + +EI+KAY LA KYHPD N+ D A KF E+ EAYEVL+D KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 264 QEYDTWG-ATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGD 312
YD +G A EQ G F D ++F +FGD
Sbjct: 63 AAYDQYGHAAFEQGGMGGGG-------------FGGGADFSDIFGDVFGD 99
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 119 bits (299), Expect = 4e-32
Identities = 31/67 (46%), Positives = 48/67 (71%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+ Y +LG+ KN+++ +IKK+Y +LA KYHPD N +P A+ KF E++ A+ +L+D TKR
Sbjct: 17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKR 76
Query: 264 QEYDTWG 270
YD +G
Sbjct: 77 NIYDKYG 83
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 117 bits (295), Expect = 8e-32
Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
YY ILG+ K++S ++IKKA+++LA KYHPD NK P+A KF E++EAYE LSD +
Sbjct: 6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANR 64
Query: 263 RQEYDTWG--ATSEQMSAAGAS 282
R+EYDT G A + +G S
Sbjct: 65 RKEYDTLGHSAFTSGKGQSGPS 86
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 117 bits (295), Expect = 9e-32
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 197 SLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN------ASKKFHEV 250
+L +KD+Y ILG +++ ++K+ Y +L YHPD D +KF E+
Sbjct: 9 ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68
Query: 251 SEAYEVLSDDTKRQEYDTWGA 271
+A+++L ++ +++YD +
Sbjct: 69 DQAWKILGNEETKKKYDLQRS 89
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 121 bits (304), Expect = 2e-31
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
+++Y +LG+SK +S++EI++A+ +LA K HPD N +PNA F +++ AYEVL D+ R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 264 QEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEE 323
++YD +G + + G + +R FG D ++ E
Sbjct: 62 KKYDKYGEKGLEDNQGGQY------------------ESWSYYRYDFGIYDDDPEIITLE 103
Query: 324 FIANKYGFGSSQEVILKI-----DKCLQQVPV----DLQLQRTTCIGGISITEEEFIANK 374
S + + C P ++ IG ++ ++ +
Sbjct: 104 RREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRM 163
Query: 375 YGFGS 379
G S
Sbjct: 164 KGVNS 168
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 115 bits (289), Expect = 4e-31
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 197 SLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN-ASKKFHEVSEAYE 255
S + DYY++L + + +S++ IKKAY +LA K+HPD N + A ++F +V+EAYE
Sbjct: 2 SSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61
Query: 256 VLSDDTKRQEYDTWG 270
VLSD KR YD +G
Sbjct: 62 VLSDAKKRDIYDRYG 76
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 115 bits (290), Expect = 5e-31
Identities = 36/75 (48%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 197 SLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN-ASKKFHEVSEAYE 255
S + +YY++LG+ ++S ++IKKAY +LA ++HPD N + A KKF VSEAYE
Sbjct: 2 SSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61
Query: 256 VLSDDTKRQEYDTWG 270
VLSD KR YD G
Sbjct: 62 VLSDSKKRSLYDRAG 76
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 113 bits (285), Expect = 3e-30
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDP-NASKKFHEVSEAYEVLSDDTK 262
YY+IL + +++SA +IKKAY A ++HPD N + A KKF EV+EAYEVLSD K
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 263 RQEYDTWGATSEQMSAAGASRST 285
R+ YD +G + G SR+
Sbjct: 62 REIYDRYGREGLTGTGTGPSRAE 84
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 111 bits (280), Expect = 7e-30
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDT 261
K YY +LG+ ++S E+KKAY ++A K+HPD N P+ +++F ++S+AYEVLSD+
Sbjct: 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDEK 62
Query: 262 KRQEYDTWG 270
KRQ YD G
Sbjct: 63 KRQIYDQGG 71
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 111 bits (279), Expect = 1e-29
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 202 KRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDT 261
K Y +LG+S +++ +E+KK Y + A KYHPD ++KF E+SEA+E+L+D
Sbjct: 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKP---TGDTEKFKEISEAFEILNDPQ 62
Query: 262 KRQEYDTWG--ATSEQMSAAGAS 282
KR+ YD +G A + G
Sbjct: 63 KREIYDQYGLEAARSGGPSFGPG 85
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 110 bits (276), Expect = 6e-29
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 204 KDYYQILGISKNS-SAKEIKKAYYELAKKYHPDTNKTDP---NASKKFHEVSEAYEVLSD 259
++ Y +L +++ +++ KAY LA+K+HPD K A ++F ++ AYE L D
Sbjct: 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74
Query: 260 DTKRQEYDTWGATSEQM 276
D + YD + +Q
Sbjct: 75 DEAKTNYDYYLDHPDQR 91
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 105 bits (263), Expect = 2e-27
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDD 260
KD + +LG+ +S E+ KAY +LA HPD P + F V A L +
Sbjct: 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKN 82
Query: 261 TKRQEYD 267
K
Sbjct: 83 IKSGPSS 89
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 112 bits (282), Expect = 4e-26
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 188 HSAHFHTSPSLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKF 247
H H H+S + +++Y +LG+SK +S++EI++A+ +LA K HPD N +PNA F
Sbjct: 5 HHHHHHSSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDF 64
Query: 248 HEVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFR 307
+++ AYEVL D+ R++YD +G + + G S + Y L R
Sbjct: 65 LKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEII-TLER 123
Query: 308 KIFGDTGFDFKVTEEEFIA 326
+ F ++ F +
Sbjct: 124 REFDAAVNSGELWFVNFYS 142
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment);
malaria, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Length = 180
Score = 103 bits (259), Expect = 1e-25
Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 450 CSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFP----------IGQDQI 499
G IK + + V + I G +DG + + D +
Sbjct: 18 YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77
Query: 500 FVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKI 559
+ Q R+ RD + + +I + +A+ G T V + L + I+ + T+
Sbjct: 78 LI-IQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRK 136
Query: 560 KIPYKGL-KNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFF 601
+P +G+ G + I P+ + +QK L++E
Sbjct: 137 IVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 104
Score = 97.7 bits (244), Expect = 1e-24
Identities = 43/94 (45%), Positives = 55/94 (58%)
Query: 385 LKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMK 444
+++ F AA+G KE VN++D C +C G E GTK C YC GSG ET TGPF+M+
Sbjct: 8 MELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMR 67
Query: 445 TTCRYCSGSGIYIKFPCQNCDGMGQNIQRRTVSI 478
+TCR C G G I PC C G GQ Q++
Sbjct: 68 STCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGP 101
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A
{Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB:
2b26_A
Length = 170
Score = 99.2 bits (248), Expect = 2e-24
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 15/159 (9%)
Query: 450 CSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFP----------IGQDQI 499
G K + G + + + I + G + G I + +
Sbjct: 15 FVGKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71
Query: 500 FVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKI 559
FV Q + RD D+ +S +++LG + ++ I G TL +
Sbjct: 72 FVI-QEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTS 130
Query: 560 KIPYKGL-KNRNSSGYGHHFVHVKIEVPRYPSEKQKDLV 597
P +G+ +N S G+ V K++ P ++ QK +
Sbjct: 131 TYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 97.3 bits (242), Expect = 1e-23
Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 197 SLSNLKRKDYYQILGISKNSSA--KEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAY 254
L+ + +LG+ +++ ++KAY + K++HPD D +K +++ Y
Sbjct: 4 VLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG-DE---EKMKKMNTLY 59
Query: 255 EVLSDDTKRQEYDTWGATSEQMSAAGASRSTTAED-YMHRWN 295
+ + D K +G + +S + + Y +W
Sbjct: 60 KKMEDGVKYAHQPDFGGFWDATEVFASSLNPGVDAIYCKQWP 101
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 95.3 bits (237), Expect = 1e-23
Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 19/125 (15%)
Query: 202 KRKDYYQILGISKN--SSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSD 259
+ +LG+ ++ + ++KAY + K++HPD D +K +++ Y+ + D
Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG-DE---EKMKKMNTLYKKMED 61
Query: 260 DTKRQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKV 319
K +G + D +W + + + +F
Sbjct: 62 GVKYAHQPDFGGFWDATEIPTYG-----TDEWEQW-WNAFNEEN-----LFCSEEMPS-- 108
Query: 320 TEEEF 324
+++E
Sbjct: 109 SDDEA 113
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 92.1 bits (229), Expect = 6e-23
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN-ASKKFHEVSEAYEVLSDDTK 262
K+ ++ + E KK L K+HPD N + + A++ F + L K
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---K 72
Query: 263 RQEYDTWG 270
+ D
Sbjct: 73 QAFLDQNA 80
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 99.0 bits (247), Expect = 4e-22
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 198 LSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN---ASKKFHEVSEAY 254
L +++DYY+ILG+ +N+ +EI KAY +LA ++HPD + + A KKF +++ A
Sbjct: 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435
Query: 255 EVLSDDTKRQEYD 267
EVLSD R+++D
Sbjct: 436 EVLSDPEMRKKFD 448
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens}
PDB: 3agy_A 3agz_A 2qld_A
Length = 181
Score = 90.4 bits (225), Expect = 3e-21
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 450 CSGSG--IYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFP---------IGQDQ 498
SG + I N DG + + ++I + +G ++G I FP I D
Sbjct: 17 YSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADI 76
Query: 499 IFVTFQVIPSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTK 558
+FV + P + + RD SD+ IS+ +A+ G T+NV + G T+ V + +
Sbjct: 77 VFV-LKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMR 135
Query: 559 IKIPYKGL-KNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSV 603
K+P +GL + G + ++ P + + ++ + +
Sbjct: 136 RKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLPI 181
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 81.1 bits (200), Expect = 5e-18
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 202 KRKDYYQILGISKNSSA--KEIKKAYYELAKKYHPDTNKTDP-----NASKKFHEVSEAY 254
+Y+++ G+ + + L K++HPD T A ++ ++++AY
Sbjct: 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAY 61
Query: 255 EVLSDDTKRQEYD 267
+ L D +R EY
Sbjct: 62 QTLKDPLRRAEYL 74
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif,
chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Length = 79
Score = 76.2 bits (188), Expect = 2e-17
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 395 GGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSG 454
G KE+ + ++ C C G+ + GT+ C C GSG G F ++ TC +C G G
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60
Query: 455 IYIKFPCQNCDGMGQ 469
IK PC C G G+
Sbjct: 61 TLIKDPCNKCHGHGR 75
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.30A {Klebsiella pneumoniae subsp}
Length = 109
Score = 76.4 bits (189), Expect = 3e-17
Identities = 20/102 (19%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 507 PSSRYHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGL 566
+ ++ ++ +A LG + V + ++ + + PG+ + +++I KGL
Sbjct: 3 AHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE-SILLTVPPGSQAGQRLRIKGKGL 61
Query: 567 KNRNSSGYGHHFVHVKIEVPRYPSEKQKDLVREFFSVEPNTN 608
++ + G F +KI +P P EK ++L ++ + E + +
Sbjct: 62 VSK--THTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFD 101
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 78.5 bits (193), Expect = 4e-17
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 205 DYYQILGISKNSSA--KEIKKAYYELAKKYHPDTNKTDPN-----ASKKFHEVSEAYEVL 257
DY+ + G+ + + + +L ++YHPD + A ++ +++A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 258 SDDTKRQEYD 267
R EY
Sbjct: 62 RHPLMRAEYL 71
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 78.5 bits (193), Expect = 5e-17
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 204 KDYYQILGISKNS-------SAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEV 256
+Y++ + ++K Y +L ++HPD S++ +++AY
Sbjct: 11 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA---QQGSEQSSTLNQAYHT 67
Query: 257 LSDDTKRQEYDTWGATSEQMSAAGASRSTTAED 289
L D +R +Y + ++ S T D
Sbjct: 68 LKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSD 100
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 72.3 bits (177), Expect = 5e-16
Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 197 SLSNLKRKDYYQILGISKN--SSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAY 254
LS ++ ++L + + +++AY + + HPD E++ +
Sbjct: 4 VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHA---LMQELNSLW 59
Query: 255 EVLSDDTKRQEYDTWGATSE 274
+ + G +
Sbjct: 60 GTFKTEVYNLRMNLGGTGFQ 79
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 74.9 bits (183), Expect = 1e-15
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 205 DYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN---ASKKFHEVSEAYEVLSDDT 261
++ +G++ + +++KK Y + HPD P A F E+++A+ +
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177
Query: 262 KRQEY 266
++ Y
Sbjct: 178 QKPLY 182
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 66.6 bits (163), Expect = 4e-14
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 192 FHTSPSLSNLKRKDYYQILGISKNS-SAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEV 250
F + K+ QIL +++N+ + K++K+ + ++ HPD + A+K +
Sbjct: 2 FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATK----I 57
Query: 251 SEAYEVLSDDTKRQ 264
+EA + L +
Sbjct: 58 NEAKDFLEKRGISK 71
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 67.4 bits (164), Expect = 5e-13
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 202 KRKDYYQILGISK--NSSAKEIKKAYYELAKKYHPDTNKTDPNASK-----KFHEVSEAY 254
+DY+ ++ ++ +++ Y +L + HPD K V++AY
Sbjct: 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY 100
Query: 255 EVLSDDTKRQEYD 267
+ L R Y
Sbjct: 101 KTLLAPLSRGLYL 113
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets,
chaperone; 2.07A {Saccharomyces cerevisiae}
Length = 121
Score = 60.0 bits (146), Expect = 3e-11
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 511 YHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPG--TSSHTKIKIPYKGLKN 568
+ RD D+ E I + AI GG +E + GD L V I PG + + I KG+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 569 RNSSGYGHHFVHVKIEVPR--YPSEKQKDLVREFFSVEPNTNGNKDD 613
GYG+ + I+ P + SE+ + E K
Sbjct: 62 PKYGGYGNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKA 108
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 56.6 bits (136), Expect = 3e-10
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 207 YQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN---ASKKFHEVSEAYEVLSD 259
++ +G++ + +++KK Y + HP P A F E+++A+ +
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 51.2 bits (122), Expect = 2e-08
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 207 YQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPN-------ASKKFHEVSEAYEVLSD 259
++ + + ++K+Y HPD + A K F + EA++ +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102
Query: 260 D 260
Sbjct: 103 L 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 2e-07
Identities = 84/589 (14%), Positives = 159/589 (26%), Gaps = 176/589 (29%)
Query: 188 HSAHFHTSPSLSNLKRKDYYQIL--GISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASK 245
H H + KD + N K+++ + K D +A
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 246 KFHEV--------SEAYEVLSDDTKRQEYDTWGATSEQMSAAGASRSTTA-EDYMHR-WN 295
+ E + ++ R Y + + + S T + R +N
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 296 ----F-KSSVDPEELFRKI---------------FGDTGF-----------DFKVTEEEF 324
F K +V + + K+ G G +KV + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKM 180
Query: 325 IANKY--GFGS--SQEVILKI--DKCLQQVPVDLQLQRTTCIGGISITEEEFIANKYGFG 378
+ + S E +L++ Q P + I + A
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS--NIKLRIHSIQAELRRLL 238
Query: 379 SSQE-----VILKIDFETAARGGYKEV-DVNVI---DICPKCR---GTR--------CEL 418
S+ ++L V + ++ C+ TR
Sbjct: 239 KSKPYENCLLVL--L----------NVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAA 284
Query: 419 GTKSVRCTYCQGSGYETTTTGPFIMKTTCRY-------CSGSGIYIK--------FPCQ- 462
T + + + + CR + + +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 463 ------NCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQIFVTFQV------IPSSR 510
NCD + I+ S+ + P ++F V IP+
Sbjct: 345 DNWKHVNCDKLTTIIE---SSL-------NVLE---PAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 511 YHRDQSDIHTEESISI-----SQAIL-----GGTINVEGIYGDTLSVEIQPGTSSHTKIK 560
D+ + + + +++ TI++ IY + L V+++ + H I
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEYALHRSIV 450
Query: 561 IPYKGLKNRNSS--------GY-----GHHFVHVKIEVPRYPSEKQKDLVREFF------ 601
Y K +S Y GHH IE E+ L R F
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK--NIE----HPER-MTLFRMVFLDFRFL 503
Query: 602 -------SVEPNTNGNKDDSNQALSGYRD-IFL---FFSRLIDFIKSFL 639
S N +G+ ++ Q L Y+ I + RL++ I FL
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Score = 45.2 bits (106), Expect = 7e-05
Identities = 59/392 (15%), Positives = 116/392 (29%), Gaps = 113/392 (28%)
Query: 10 IRGATGKSGYSALLMSV-SKFSVETEIDRKIGLYAPYVSKRFRNYGHFPKIQINVHAN-- 66
I G G SG + + + V + V+ ++D KI + +++ +N + P+ + +
Sbjct: 155 IDGVLG-SGKTWVALDVCLSYKVQCKMDFKI--F--WLN--LKNC-NSPETVLEMLQKLL 206
Query: 67 SQSYVFFYEESDG-----LTYSSIRQTAKELQRFRNYGQ-------------FRLFDT-- 106
Q + SD L SI+ + L + + Y + F+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 107 KIAISSCNVTKKCFYSIQTSPQGSVG---SGLMK--TL-VLQKVLTMILS-L-KAVIRVP 158
KI +++ F S T+ S+ L +L K L L + V+
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 159 PRLFSSFKYGALQLNRFHLVNPQPLIYLRHSAHFHT-SPSLSNLK---RKDYYQILGI-- 212
PR S R L ++ SL+ L+ + + L +
Sbjct: 327 PRRLSII--AESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 213 ------SK-------NSSAKEIKKAYYELAKK-------------YHP---DTNKTDPNA 243
+ + ++ +L K + N
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN- 441
Query: 244 SKKFH-EVSEAYEVLSDDTKRQEYDTWGATSEQMSAAGASRSTTAEDYM------HRWNF 296
H + + Y + + +D+ + + Y H N
Sbjct: 442 EYALHRSIVDHYNI------PKTFDSDDLIPPYL-----------DQYFYSHIGHHLKNI 484
Query: 297 KSSVDPEELFRKIFGDTGFDFKVTEEEFIANK 328
+ + LFR +F DF+ F+ K
Sbjct: 485 EHP-ERMTLFRMVF----LDFR-----FLEQK 506
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 2e-07
Identities = 92/571 (16%), Positives = 161/571 (28%), Gaps = 198/571 (34%)
Query: 150 SLKAVIRVPPRLFSSFKYGALQLN-RFHLVNPQPLIYLRHS----------AHF--HTSP 196
SL+ V+ VP F A QL +F+ + P+P F + S
Sbjct: 15 SLEHVLLVPTASFFI----ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 197 SLSNLKRKDYYQILGIS---------------------------KNSSAKEIKKAYYE-- 227
+ K + Q+L + KE+ K Y
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 228 -LAKKYHPDTNKTDP---NASK----KFHEV------SEAY--EVLSDDTKRQEYDTWGA 271
+AK+ P K++ A + + ++ Y E L R Y T+
Sbjct: 131 IMAKR--PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-L-----RDLYQTYHV 182
Query: 272 TSEQ-MSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFK--VTEEEFIANK 328
+ + + S ++++D E++F + G + + +K
Sbjct: 183 LVGDLIKFSAETLSELI---------RTTLDAEKVFTQ-----GLNILEWLENPSNTPDK 228
Query: 329 YGFGSS----------Q----EVILKIDKCLQQVPVDL--QLQ-RTTCIGGI-------- 363
S Q V K+ L P +L L+ T G+
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKL---LGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 364 SITEEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTK-- 421
+ + E F + + + + F R E + P E
Sbjct: 286 TDSWESFFVS-----VRK--AITVLFFIGVRC--YEA-YPNTSLPPSILEDSLENNEGVP 335
Query: 422 ----SVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYI-------KF----PCQNCDG 466
S+ ++ KT +G + I P Q+ G
Sbjct: 336 SPMLSIS-------NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 467 MGQNIQRRTVSIPIPQG-IEDGQ-----TIRF-PIG-----------QDQIF-------V 501
+ +++ + Q I + + RF P+ D I V
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 502 TFQV----IPSSRYH-RDQSDI-HTEESI--SISQAILGGTINVEGIYGDTLS--VEIQP 551
+F IP Y D SD+ SI I I+ + E + ++ P
Sbjct: 449 SFNAKDIQIPV--YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 552 GTSSHTKIKIPYKG---LKNRNSSGYGHHFV 579
G +S G L +RN G G +
Sbjct: 507 GGAS---------GLGVLTHRNKDGTGVRVI 528
Score = 48.1 bits (114), Expect = 8e-06
Identities = 44/224 (19%), Positives = 74/224 (33%), Gaps = 79/224 (35%)
Query: 4 GPWNRRIRGATGKSG--YSALLMSVSKFSVET--EIDRK-------IGLYAPYVSKRFRN 52
G ++GATG S +A+ ++ + S E+ RK IG+ R
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETD-SWESFFVSVRKAITVLFFIGV---------RC 310
Query: 53 YGHFPKIQINVHANSQSYVFFYEESDGL-TY-SSIR-----QTAKELQRFRNYGQFRLFD 105
Y +P + S E ++G+ + SI Q + + ++
Sbjct: 311 YEAYPNTSLPPSILEDSL----ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA---G 363
Query: 106 TKIAISSCNVTKKCFYSIQTSPQGSVGSGLMKTLV-----LQKVLTMILSLKAVI----- 155
++ IS N + V SG ++L L+K KA
Sbjct: 364 KQVEISLVN-----------GAKNLVVSGPPQSLYGLNLTLRKA-------KAPSGLDQS 405
Query: 156 RVPPRLFSSFKYGALQLNRFHLVNPQPLIYLRHSAHFHTSPSLS 199
R+P FS K +F +L ++ FH S L
Sbjct: 406 RIP---FSERKL------KFSNR------FLPVASPFH-SHLLV 433
Score = 47.0 bits (111), Expect = 2e-05
Identities = 94/555 (16%), Positives = 164/555 (29%), Gaps = 188/555 (33%)
Query: 16 KSGYSALLMSVS-KFSVETEIDRKIGLYAP---YVSKRFR--NYGHFPKI---------- 59
+ ++ +L + F+ + E L YVS G F ++
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 60 ----QINVHANSQSYVFFYEESDGLTYSSIRQ--TAKEL--QRFRNYGQFRLFDTKIAIS 111
++HA + + + + T I+ TA+ + + F LF A+
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR---AVG 150
Query: 112 SCNVTKKCFYSI---QTSPQGSVGSGLM---------KTLVLQKVLTMILSLKAVIRVPP 159
N +I Q G+ LV + +L +IR
Sbjct: 151 EGNAQ---LVAIFGGQ----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 160 RLFSSFKYGALQLNRFHLVNPQ---------------PLIYLRHSAHFHTSPSLSNLKRK 204
F G L + + L NP PLI + AH+ + L
Sbjct: 204 DAEKVFTQG-LNILEW-LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 205 DYYQIL-GISKNS----SAKEIKKA-----YYELAKKYHPDTNKTDPNASKKFH---EVS 251
+ L G + +S +A I + ++ +K + F
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA----------ITVLFFIGVRCY 311
Query: 252 EAY-------EVLSDDTKRQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVD--- 301
EAY +L D + E G S +S + ++ +DY+++ N
Sbjct: 312 EAYPNTSLPPSILEDSLENNE----GVPSPMLSISNLTQEQV-QDYVNKTNSHLPAGKQV 366
Query: 302 ----------------PEEL------FRKIFGDTGFD-----F---KVTEEEFIANKYG- 330
P+ L RK +G D F K+ +N++
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK----FSNRFLP 422
Query: 331 ----FGSS--QEVILKIDKCLQ-----------QVPV-------DLQLQRTTCIGGISIT 366
F S I+K L Q+PV DL++ SI+
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG------SIS 476
Query: 367 EEEFIANKYGFGSSQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELG--TKSVR 424
E I + + L + +ET + +++D P G LG T +
Sbjct: 477 ER--IVD-------CIIRLPVKWETTTQFKA----THILDFGP---GGASGLGVLTHRNK 520
Query: 425 CTYCQGSGYETTTTG 439
G+G G
Sbjct: 521 ----DGTGVRVIVAG 531
Score = 32.7 bits (74), Expect = 0.53
Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 96/230 (41%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAY-----EVLS 258
D Y+ + +A+++ + A + + Y +++
Sbjct: 1633 MDLYK-----TSKAAQDV----WNRADNH-----------------FKDTYGFSILDIVI 1666
Query: 259 DDTKRQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFK 318
++ G +++ E+Y F++ VD + KIF +
Sbjct: 1667 NNPVNLTIHFGGEKGKRI----------RENYS-AMIFETIVDGKLKTEKIFKE------ 1709
Query: 319 VTEEEFIANKYGFGSSQEVILKIDKCLQQVPVDLQLQRT--T--CIGGISIT-----EEE 369
+ E + Y F S + + L T T + + + +
Sbjct: 1710 INEH---STSYTFRSEKGL----------------LSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 370 FIANKYGF--G----------SSQEVILKIDFETAA-----RGGYKEVDV 402
+ G S +V + E+ RG +V V
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADV---MSIESLVEVVFYRGMTMQVAV 1797
Score = 30.0 bits (67), Expect = 3.1
Identities = 24/170 (14%), Positives = 46/170 (27%), Gaps = 42/170 (24%)
Query: 475 TVSIPIPQGIEDGQTIRFPIG---QDQIFVTFQVIPSSRYHRDQSDIHTEESISISQAIL 531
+ +P T F I Q+Q F P+ + D E + L
Sbjct: 17 EHVLLVP-------TASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVG---KFL 65
Query: 532 GGTINVEGIYGDTLSVEIQPGTSSHTK--IKIPYKG-----LKNRNSSGYGHHFVHVKIE 584
G Y +S ++P + + L+ + H ++
Sbjct: 66 G--------Y---VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI----HALAAKLLQ 110
Query: 585 VPRYPSEKQKDLVREFFSVEPNTN---GNKDDS---NQALSGYRDIFLFF 628
K K+L++ + + K +S G + F
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 38.9 bits (90), Expect = 0.002
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 394 RGGYKEVDVNVIDICPKCRGTRCELGTKSVR----CTYC 428
R G + ++N++ CP+C+ ++ + C C
Sbjct: 10 RAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALC 48
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.006
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 8/30 (26%)
Query: 219 KEIKKAYYELAKKYHPDTNKTDP----NAS 244
+ +KK L K Y D+ P A+
Sbjct: 20 QALKKLQASL-KLYADDSA---PALAIKAT 45
Score = 29.9 bits (66), Expect = 1.3
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 10/35 (28%)
Query: 28 KFSVETEIDRKIGLYAPYVSKRFRNYGHFPKIQIN 62
K +++ ++ + LYA P + I
Sbjct: 19 KQALK-KLQASLKLYAD---------DSAPALAIK 43
Score = 28.8 bits (63), Expect = 3.5
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 12/35 (34%)
Query: 86 RQTAKELQRFRNYGQFRLF--DT--KIAISSCNVT 116
+Q K+LQ +L+ D+ +AI T
Sbjct: 19 KQALKKLQ-----ASLKLYADDSAPALAI---KAT 45
>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose)
mitosis, antephase checkpoint, cell cycle; HET: PGE ADP
ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A
Length = 261
Score = 35.5 bits (81), Expect = 0.041
Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 5/91 (5%)
Query: 412 RGTRCELGTKSVRCTYCQG---SGYETTTTGPFIMKTTCRYCSGS--GIYIKFPCQNCDG 466
+ C L CT C P + C C +Y C G
Sbjct: 69 QDYVCPLQGSHALCTCCFQPMPDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYG 128
Query: 467 MGQNIQRRTVSIPIPQGIEDGQTIRFPIGQD 497
+ G+ + + I ++
Sbjct: 129 CLAPFCELNLGDKCLDGVLNNNSYESDILKN 159
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap,
tryptophan RNA-binding attenuation PROT transcription
attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Length = 53
Score = 28.5 bits (63), Expect = 0.86
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 443 MKTTCRYCSGSGIYIKFPCQNCDGMG 468
++TTC C+GSG PC C G G
Sbjct: 8 LETTCPNCNGSGREEPEPCPKCLGKG 33
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 1.0
Identities = 15/83 (18%), Positives = 20/83 (24%), Gaps = 30/83 (36%)
Query: 522 ESISISQA----ILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKNR-------N 570
Q I+ G N + + + P K LK
Sbjct: 1393 MMNGALQILNSGIIPGNRNAD---------NVDKILEQFEYVLYPSKTLKTDGVRAVSIT 1443
Query: 571 SSGYGHH-----FVHVKIEVPRY 588
S G+G VH P Y
Sbjct: 1444 SFGFGQKGGQAIVVH-----PDY 1461
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA
processing, nucleus, spliceosome, unknown function; NMR
{Saccharomyces cerevisiae}
Length = 59
Score = 28.5 bits (63), Expect = 1.1
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 220 EIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYDTW 269
+ + ++EL +Y D T SKK + Y++ D + ++ W
Sbjct: 7 DERNIFFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEW 56
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit
protein; transcription regulation; 2.80A {Bacillus
subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Length = 53
Score = 28.1 bits (62), Expect = 1.2
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 443 MKTTCRYCSGSGIYIKFPCQNCDGMG 468
++ C C +G PC C G G
Sbjct: 8 LEVACPKCERAGEIEGTPCPACSGKG 33
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.1
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 24/95 (25%)
Query: 234 PDTNKTDPNASKKFHEVSEAYEVLSDDTKR-QEYDTWGATSEQMSAAGASRSTTAEDYMH 292
D +P + +K+ E KR QE D EQ A + E++
Sbjct: 77 ADRLTQEPESIRKWREEQR---------KRLQELDAASKVMEQEWREKAKKD--LEEWNQ 125
Query: 293 RWNFKSSVDPEELFRKIFGDTGFDFKVTEEEFIAN 327
R + E K + ++ ++ F
Sbjct: 126 RQS--------EQVEKNKINN----RIADKAFYQQ 148
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 29.2 bits (66), Expect = 2.4
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 13/65 (20%)
Query: 399 EVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSGIYIK 458
E+D +C+ V C+ C +GY + +C+
Sbjct: 83 ELDATCNIKNGRCKQFCKTGADSKVLCS-CT-TGY----RLAP-DQKSCKPAV------P 129
Query: 459 FPCQN 463
FPC
Sbjct: 130 FPCGR 134
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 28.4 bits (62), Expect = 4.4
Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 18/90 (20%)
Query: 380 SQEVILKIDFETAARGGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTG 439
+ E K V + ++ C C LG+ SV C C+
Sbjct: 30 TMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCK---------- 79
Query: 440 PFIMKTTCRYCSGSGIYIK----FPCQNCD 465
K C C + + C+ C
Sbjct: 80 ----KNVCTKCGVETSNNRPHPVWLCKICL 105
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding
protein, signaling protein; NMR {Mus musculus} SCOP:
g.49.1.1 PDB: 1kbf_A
Length = 49
Score = 26.1 bits (57), Expect = 6.0
Identities = 4/27 (14%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 438 TGPFIMKTTCRYCSGSGIYIKFPCQNC 464
+ + C C + C++C
Sbjct: 8 STKSWLSQVCNVC-QKSMIFGVKCKHC 33
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 28.5 bits (64), Expect = 7.0
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 401 DVNVIDICPKCRGTRCELGTKSVRCTYCQGSG 432
D+ V+ + PKC GT VR Y +G G
Sbjct: 146 DITVVMVAPKCPGTE-------VREEYKRGFG 170
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 28.4 bits (62), Expect = 8.0
Identities = 10/87 (11%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 406 DICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMK---TTCRYCSGSGIYIKFPCQ 462
++C +L S + T + E + + C G C+
Sbjct: 444 NLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCR 503
Query: 463 NCDGMGQNIQRRTVSIPIPQGIEDGQT 489
N + + + + P+ +
Sbjct: 504 NVSRGRECVDKCKLLEGEPREFVENSE 530
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 88
Score = 26.5 bits (58), Expect = 9.2
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPD 235
R+ + + +++ EIK + + +++P
Sbjct: 21 REKLCFLDKVEPHATIAEIKNLFTKTHPQWYPA 53
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 28.2 bits (63), Expect = 9.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 217 SAKEIKKAYYELAKKYHPDTNKTDPNASKKFHE 249
S +E K A+ + KKY P + D + ++
Sbjct: 444 SPEERKTAWRNIEKKYLPHRDYEDNDYLERGGF 476
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.397
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,785,950
Number of extensions: 593739
Number of successful extensions: 1419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1325
Number of HSP's successfully gapped: 77
Length of query: 644
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 544
Effective length of database: 3,909,693
Effective search space: 2126872992
Effective search space used: 2126872992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.3 bits)