RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11884
(644 letters)
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 89.3 bits (221), Expect = 2e-22
Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 203 RKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTK 262
++DYY+ILG+SK + +EI+KAY LA KYHPD N+ D A KF E+ EAYEVL+D K
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 263 RQEYDTWG 270
R YD +G
Sbjct: 62 RAAYDQYG 69
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 87.8 bits (217), Expect = 9e-22
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 197 SLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKK------FHEV 250
+L +KD+Y ILG +++ ++K+ Y +L YHPD D A F E+
Sbjct: 9 ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEI 68
Query: 251 SEAYEVLSDDTKRQEYDTWGA 271
+A+++L ++ +++YD +
Sbjct: 69 DQAWKILGNEETKKKYDLQRS 89
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 85.1 bits (210), Expect = 7e-21
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 198 LSNLKRKDYYQILGISKN--SSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYE 255
LS ++ ++L + + +++AY + + HPD + E++ +
Sbjct: 5 LSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG----SHALMQELNSLWG 60
Query: 256 VLSDDTKRQEYDTWGATSE 274
+ + G +
Sbjct: 61 TFKTEVYNLRMNLGGTGFQ 79
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 81.9 bits (202), Expect = 1e-19
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 198 LSNLKR-----KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNAS---KKFHE 249
LS + + ++ +G++ + +++KK Y + HPD P F E
Sbjct: 22 LSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFME 81
Query: 250 VSEAYEVLSDDTKRQEY 266
+++A+ + ++ Y
Sbjct: 82 LNDAWSEFENQGQKPLY 98
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 80.5 bits (198), Expect = 3e-19
Identities = 36/67 (53%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 204 KDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKR 263
KDYYQ LG+++ +S +EIK+AY A +YHPD NK +P A +KF E++EAY+VLSD KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 264 QEYDTWG 270
+ +D +G
Sbjct: 62 EIFDRYG 68
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 79.3 bits (195), Expect = 5e-19
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 205 DYYQILGISKNSSA--KEIKKAYYELAKKYHPDTNKTDPNASK-----KFHEVSEAYEVL 257
DY+ + G+ + + + +L ++YHPD + A + + +++A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 258 SDDTKRQEYD 267
R EY
Sbjct: 62 RHPLMRAEYL 71
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 79.3 bits (195), Expect = 7e-19
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 188 HSAHFHTSPSLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNA-SKK 246
H H H P S LK + ++ + E KK L K+HPD N + + ++
Sbjct: 2 HHHHHHLVPRGSILK--EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEV 59
Query: 247 FHEVSEAYEVLSDDTKRQEYD 267
F + L +
Sbjct: 60 FKHLQNEINRLEKQAFLDQNA 80
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 70.2 bits (171), Expect = 2e-15
Identities = 17/108 (15%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 202 KRKDYYQILGISKN--SSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSD 259
+ +LG+ ++ + ++KAY + K++HPD + +++ Y+ + D
Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKMED 61
Query: 260 DTKRQEYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFR 307
K +G + + + E + + +N ++ EE+
Sbjct: 62 GVKYAHQPDFGGFWDA-TEIPTYGTDEWEQWWNAFNEENLFCSEEMPS 108
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 90
Score = 67.7 bits (165), Expect = 1e-14
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 511 YHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPGTSSHTKIKIPYKGLKN-R 569
+ RD D+ +S +++LG + ++ I G TL + P +G+ +
Sbjct: 2 FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61
Query: 570 NSSGYGHHFVHVKIEVPRYPSEKQKDLV 597
N S G+ V K++ P ++ QK +
Sbjct: 62 NPSQRGNLIVKYKVDYPISLNDAQKRAI 89
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein
DnaJ {Escherichia coli [TaxId: 562]}
Length = 79
Score = 64.7 bits (157), Expect = 8e-14
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 395 GGYKEVDVNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRYCSGSG 454
G KE+ + ++ C C G+ + GT+ C C GSG G F ++ TC +C G G
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60
Query: 455 IYIKFPCQNCDGMGQ 469
IK PC C G G+
Sbjct: 61 TLIKDPCNKCHGHGR 75
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 62.6 bits (152), Expect = 4e-13
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 511 YHRDQSDIHTEESISISQAILGGTINVEGIYGDTLSVEIQPG--TSSHTKIKIPYKGLKN 568
+ RD D+ E I + AI GG +E + GD L V I PG + + I KG+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 569 RNSSGYGHHFVHVKIEVP 586
GYG+ + I+ P
Sbjct: 62 PKYGGYGNLIIKFTIKDP 79
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein
mas5 (Hsp40, Ydj1), insert domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 74
Score = 58.2 bits (140), Expect = 2e-11
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 407 ICPKCRGTRCELGTKSVRCTYCQGSGYETTTT----GPFIMKTTCRYCSGSGIYI--KFP 460
+C +C G + G +CT C G G + T +T C C G+G I K
Sbjct: 4 LCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDR 62
Query: 461 CQNCDGMG 468
C++C+G
Sbjct: 63 CKSCNGKK 70
Score = 26.6 bits (58), Expect = 2.2
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 408 CPKCRGTRCELGTKSVRCTYCQGSGYE 434
C C GT ++ RC C G E
Sbjct: 47 CDVCHGT-GDIIDPKDRCKSCNGKKVE 72
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate
reductase), N-terminal domain {Shewanella oneidensis
[TaxId: 70863]}
Length = 90
Score = 50.9 bits (121), Expect = 8e-09
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 7/69 (10%)
Query: 408 CPKCRGTRCEL---GTKSVRCTYCQGSGYETTTT----GPFIMKTTCRYCSGSGIYIKFP 460
C C + +C C G E ++ C + K
Sbjct: 14 CESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPT 73
Query: 461 CQNCDGMGQ 469
C++C G+
Sbjct: 74 CESCHDDGR 82
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 80
Score = 42.2 bits (99), Expect = 8e-06
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 12/67 (17%)
Query: 450 CSGSGIYIKFPCQNCDGMGQNIQRRTVSIPIPQGIEDGQTIRFPIGQDQ---------IF 500
G K + G + + + I + G + G I + D +
Sbjct: 15 FVGKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71
Query: 501 VTFQVIP 507
Q
Sbjct: 72 FVIQEKS 78
Score = 33.3 bits (76), Expect = 0.011
Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 517 DIHTEESISISQAILGGTINVEGIYGD--------TLSVEIQPGTSSHTKIKIPYKGLKN 568
+ +S+ +G + + + ++++PG + TKI +G N
Sbjct: 2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYN 61
Query: 569 RNSSGYGHHFVHVKIE 584
+ ++ +
Sbjct: 62 PQTGRRKTLQFVIQEK 77
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 29.3 bits (66), Expect = 0.25
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 189 SAHFHTSPSLSNLKRKDYYQILGISKNSSAKEIKKA 224
A FHT +++ +K+ I GIS+ + K + +A
Sbjct: 28 EAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 63
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 64
Score = 28.1 bits (63), Expect = 0.44
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 189 SAHFHTSPSLSNLKRKDYYQILGISKNSSAKEIKKA 224
+ HT+ +++ RKD +I GIS+ + K + +A
Sbjct: 21 ESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEA 56
>d1repc1 a.4.5.10 (C:15-143) RepE54 {Escherichia coli, mini-F
plasmid [TaxId: 562]}
Length = 129
Score = 28.7 bits (64), Expect = 0.96
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKK----YHPDTNKTDPNASKKFHEVSEA 253
+ Y +I G++ ++K+I++A A K Y P+ + D + F +
Sbjct: 48 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKP 104
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 61
Score = 27.3 bits (61), Expect = 0.96
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 190 AHFHTSPSLSNLKRKDYYQILGISKNSSAKEIKKAYYELA 229
A + T +++ + ++ GIS+ +A +I +A + A
Sbjct: 20 AGYDTLEAIAVASPIELKEVAGISE-GTALKIIQAARKAA 58
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 60
Score = 27.0 bits (60), Expect = 1.1
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 190 AHFHTSPSLSNLKRKDYYQILGISKNSSAKEIKKAYYELA 229
A + ++ + I GIS+ +A ++ +L
Sbjct: 18 AGYIDFMKIATATVGELTDIEGISEK-AAAKMIMGARDLC 56
>d1kvza_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
(Rana catesbeiana), RNase4 [TaxId: 8400]}
Length = 107
Score = 27.9 bits (62), Expect = 1.5
Identities = 9/63 (14%), Positives = 14/63 (22%), Gaps = 12/63 (19%)
Query: 402 VNVIDICPKCRGTRCELGTKSVRCTYCQGSGYETTTTGPFIMKTTCRY-CSGSGIYIKFP 460
V +C + L C C+Y S I
Sbjct: 43 GPVKALCRGVIFSADVLSNSEFYLAECNVKPR-----------KPCKYKLKKSSNRICIR 91
Query: 461 CQN 463
C++
Sbjct: 92 CEH 94
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli
[TaxId: 562]}
Length = 87
Score = 26.7 bits (59), Expect = 2.5
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 217 SAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEAYEVLSDDTKRQEYD 267
+A E + ++ + PN E+ A E D R Y+
Sbjct: 19 TAIEFSERICVERRRLY-GVKDLSPNILNCGEELFMAAERFEPDADRANYE 68
>d1iqoa_ d.214.1.1 (A:) Hypothetical protein MTH1880 {Archaeon
Methanothermobacter thermautotrophicus [TaxId: 145262]}
Length = 88
Score = 25.9 bits (57), Expect = 4.3
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 200 NLKRKDYYQILGISKNSSAKEIKKAYYELAKKYHPDTNK 238
++K +L +S +S EI+K E K + T K
Sbjct: 44 SIKGTQSNHVLFLSSYNSVDEIRKELEEAGAKINHTTLK 82
>d1avca2 a.65.1.1 (A:351-671) Annexin VI {Cow (Bos taurus) [TaxId:
9913]}
Length = 321
Score = 27.7 bits (61), Expect = 4.4
Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 8/145 (5%)
Query: 209 ILGISKNSSAKEIKKAYYELAKKYHPDTNKTDPNASKKFHEVSEA----YEVLSDDTKRQ 264
IL N+ + I KAY E K D +D + K +S A E D + +
Sbjct: 111 ILATRTNAEIQAINKAYKEDYHKTLEDALSSDTSGHFKRILISLATGNREEGGEDRERAR 170
Query: 265 EYDTWGATSEQMSAAGASRSTTAEDYMHRWNFKSSVDPEELFRKIFGDTGFDFKVTEEEF 324
E A +++ + ++ E R+ R++F + E
Sbjct: 171 EDAQVAAEILEIADTTSGDKSSLET---RFMMILCTRSYPDLRRVFQEFVKMTNYDVEHT 227
Query: 325 IANKYGFGSSQEVILKIDKCLQQVP 349
I + G ++V + I + ++ P
Sbjct: 228 IKKEMS-GDVRDVFVAIVQSVKNKP 251
>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA
reductase {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 26.2 bits (58), Expect = 6.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 448 RYCSGSGIYIKFPCQNCDGMGQN 470
+G +YI+F ++ D MG N
Sbjct: 50 TSIAGRNLYIRFQSRSGDAMGMN 72
>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 26.8 bits (59), Expect = 6.5
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 435 TTTTGPFIMKTTCRYCSGSGIYIKFPCQNCDGMGQNIQRRT-VSIPI 480
+ ++ Y +G K + D M +NI R V+ P+
Sbjct: 82 ISIVDRYLEHDRV-YIFENGGDKKVYLSSADWMTRNIDYRIEVATPL 127
>d1hkqa_ a.4.5.10 (A:) Replication protein A, repA {Pseudomonas
syringae pv. savastanoi [TaxId: 29438]}
Length = 125
Score = 25.9 bits (57), Expect = 7.4
Identities = 4/32 (12%), Positives = 13/32 (40%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKY 232
++ + ++ GI + + A +L +
Sbjct: 41 IRADTFAEVFGIDVKHAYAALDDAATKLFNRD 72
>d2nrac1 a.4.5.10 (C:9-151) Replication initiation protein PI
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 26.0 bits (57), Expect = 8.3
Identities = 4/32 (12%), Positives = 15/32 (46%)
Query: 201 LKRKDYYQILGISKNSSAKEIKKAYYELAKKY 232
++ +D + I+ + + +++K+ L
Sbjct: 49 IRAEDLAALAKITPSLAYRQLKEGGKLLGASK 80
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex
aeolicus [TaxId: 63363]}
Length = 151
Score = 26.3 bits (57), Expect = 8.4
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 552 GTSSHTKIKIPYKGLKNRNSSGYGHHF-------VHVKIEVPRYPSEKQKDLVREFF 601
++I+ ++ G F ++ +++ YP E+ +L+ EFF
Sbjct: 87 YALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPLEEASELLSEFF 143
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 25.6 bits (56), Expect = 9.0
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 185 YLRHSAHFHTSPSLSNLKRKDYYQILGISKNSSAKEIKKAYYELAKK 231
Y + S ++ L++L K+ +G ++ K+ Y +LA++
Sbjct: 16 YQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEE 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.397
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,430,798
Number of extensions: 117493
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 39
Length of query: 644
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 553
Effective length of database: 1,158,166
Effective search space: 640465798
Effective search space used: 640465798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)