BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11885
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 164/309 (53%), Gaps = 16/309 (5%)
Query: 7 EYSLNSPPEDGITAVKFAPNS--NQFLLASSWDCNVSLYDITNNNLRLKYA---HSDPVL 61
+ + S P+D I + F+P + FL+A SW +V +++ ++ + A H+ PVL
Sbjct: 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 90
Query: 62 DCCFQD-AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVN--CILTGSWD 118
D C+ D F+ D T KM+D ++ I HD P++ + + N C++TGSWD
Sbjct: 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 150
Query: 119 TSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESS 178
++K WD RSS + P++ + + VV TA R + ++ L N +R ES
Sbjct: 151 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 210
Query: 179 LKFQTRCIKCFPNKQ----GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR---IKEDG 231
LK Q RC+ F +KQ G+ L SIEGR A+ Y++ P K + FKCHR
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA 269
Query: 232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNV 291
+ IY VN I+FH + T AT GSDG + WD + +L + D I++ CF+++GN+
Sbjct: 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329
Query: 292 LAIACSYNY 300
A A SY++
Sbjct: 330 FAYASSYDW 338
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 46/318 (14%)
Query: 10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLY--DITNNNL----RLKYAHSDPVLDC 63
+ P+D I+ +K P S LL +SWD ++++Y DI N+ L+Y H P+L C
Sbjct: 6 IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCC 62
Query: 64 CFQDA--VHSFSGGLDCTLKMFDFNTQTETVIGTHDQP----IRAVEYSDEVNCILTGSW 117
F D + + G + + D T+++ R +Y D+ ++ SW
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK--LIAASW 120
Query: 118 DTSVKMWDPRS---------SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL--- 165
D +++ DPR+ + N +K+FTM + +VG +V + L
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 166 -RNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLD-TGPEMQKMK-YA 221
+ G I ES LK+Q R + P +Q GY SSI+GR AVE+ D G + K +A
Sbjct: 181 EDDNGTI---EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT 281
F+CHR+ YPVN+I F + T GSDG ++ W+ +K++ F +++
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---- 293
Query: 282 SLCFSYDGNVLAIACSYN 299
+ +V+ IACS N
Sbjct: 294 ------EDSVVKIACSDN 305
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 46/318 (14%)
Query: 10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLY--DITNNNL----RLKYAHSDPVLDC 63
+ P+D I+ +K P S LL +SWD ++++Y DI N+ L+Y H P+L C
Sbjct: 6 IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCC 62
Query: 64 CFQDA--VHSFSGGLDCTLKMFDFNTQTETVIGTHDQP----IRAVEYSDEVNCILTGSW 117
F D + + G + + D T+++ R +Y D+ ++ SW
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK--LIAASW 120
Query: 118 DTSVKMWDPRS---------SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL--- 165
D +++ DPR+ + N +K+FTM + +VG +V + L
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 166 -RNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLD-TGPEMQKMK-YA 221
+ G I ES LK+Q R + P +Q GY SSI+GR AVE+ D G + K +A
Sbjct: 181 EDDNGTI---EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT 281
F+CHR+ YPVN+I F + T GSDG ++ W+ +K++ F +++
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---- 293
Query: 282 SLCFSYDGNVLAIACSYN 299
+ +V+ IACS N
Sbjct: 294 ------EDSVVKIACSDN 305
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 46/318 (14%)
Query: 10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLY--DITNNNL----RLKYAHSDPVLDC 63
+ P+D I+ +K P S LL +SWD ++++Y DI N+ L+Y H P+L C
Sbjct: 6 IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCC 62
Query: 64 CFQDA--VHSFSGGLDCTLKMFDFNTQTETVIGTHDQP----IRAVEYSDEVNCILTGSW 117
F D + + G + + D T+++ R +Y D+ ++ SW
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK--LIAASW 120
Query: 118 DTSVKMWDPRS---------SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL--- 165
D +++ DPR+ + N +K+FTM + +VG +V + L
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180
Query: 166 -RNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLD-TGPEMQKMK-YA 221
+ G I ES LK+Q R + P +Q GY SSI+GR AVE+ D G + K +A
Sbjct: 181 EDDNGTI---EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT 281
F+CHR+ YPVN+I F + T GSDG ++ W+ +K++ F +++
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---- 293
Query: 282 SLCFSYDGNVLAIACSYN 299
+ +V+ IACS N
Sbjct: 294 ------EDSVVKIACSDN 305
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 149/318 (46%), Gaps = 46/318 (14%)
Query: 10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLY--DITNNNL----RLKYAHSDPVLDC 63
+ P+D I+ +K P S LL +SWD ++++Y DI N+ L+Y H P+L C
Sbjct: 6 IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH--PLLCC 62
Query: 64 CFQDA--VHSFSGGLDCTLKMFDFNTQTETVIGTHDQP----IRAVEYSDEVNCILTGSW 117
F D + + G + + D T+++ R +Y D+ ++ SW
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK--LIAASW 120
Query: 118 DTSVKMWDPRS---------SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL--- 165
D +++ DPR+ + N +K+FT + +VG +V + L
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTXDTNSSRLIVGXNNSQVQWFRLPLC 180
Query: 166 -RNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLD-TGPEMQKMK-YA 221
+ G I ES LK+Q R + P +Q GY SSI+GR AVE+ D G + K +A
Sbjct: 181 EDDNGTI---EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT 281
F+CHR+ YPVN+I F + T GSDG ++ W+ +K++ F +++
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---- 293
Query: 282 SLCFSYDGNVLAIACSYN 299
+ +V+ IACS N
Sbjct: 294 ------EDSVVKIACSDN 305
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 106/257 (41%), Gaps = 41/257 (15%)
Query: 26 NSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF 83
N+ F +++SWD ++ L+++ N + K+ H+ VL F D SGG D L+++
Sbjct: 77 NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVW 136
Query: 84 DFNTQTETVI--GTHDQPIRAVEYSDEVNC--ILTGSWDTSVKMWDPRSSRCVGNYTQPD 139
+ + + G H + V +S ++ I++G WD VK+WD + R V +
Sbjct: 137 NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHT 196
Query: 140 KVFTM-------SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK----- 187
T SLC G A +WDL G + + C
Sbjct: 197 NYVTSVTVSPDGSLCASSDKDGVAR----LWDL-TKGEALSEMAAGAPINQICFSPNRYW 251
Query: 188 -CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP-VNAISFHQ 245
C ++G + +E + + ++ PE Q G +KI P +I++
Sbjct: 252 MCAATEKGIRIFDLENKDII--VELAPEHQ--------------GSKKIVPECVSIAWSA 295
Query: 246 EYNTFATGGSDGYVNIW 262
+ +T +G +D + +W
Sbjct: 296 DGSTLYSGYTDNVIRVW 312
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/194 (18%), Positives = 77/194 (39%), Gaps = 16/194 (8%)
Query: 96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-VFTMSLCGEKFVVG 154
H + V S+ N ++ SWD S+++W+ ++ +C + K V +++ + +
Sbjct: 66 HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 155 TAGR--KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG 212
+ GR + +W+++ R + + + C++ P+ V+ S V+ D
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSRGAHTDWVS-CVRFSPSLDAPVIVSGGWDNLVKVWD-- 182
Query: 213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ 272
R+ D V +++ + + A+ DG +WD + L +
Sbjct: 183 ---------LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE 233
Query: 273 FHRYDTGITSLCFS 286
I +CFS
Sbjct: 234 M-AAGAPINQICFS 246
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 38/245 (15%)
Query: 31 LLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT 89
+++ S D + ++DI T L + H V C D SG D +K++D T+T
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDPETET 270
Query: 90 --ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFT-MSL 146
T+ G H + ++++ D ++ +++GS DTS+++WD + C+ T + + M L
Sbjct: 271 CLHTLQG-HTNRVYSLQF-DGIH-VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 327
Query: 147 CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAV 206
V G A V IWD++ G +Q + K Q+ + C + +V++S
Sbjct: 328 KDNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQS-AVTCLQFNKNFVITS------- 378
Query: 207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266
+DG K++ + F + T +GGS G V N
Sbjct: 379 ---------------------SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 417
Query: 267 KKRLC 271
K +C
Sbjct: 418 TKLVC 422
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCFQDAVHSFSGGL 76
+ AV+ + +++ ++D V ++D T L H++ V F D +H SG L
Sbjct: 239 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSL 297
Query: 77 DCTLKMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN 134
D +++++D T T+ G H +E D N +++G+ D++VK+WD ++ +C+
Sbjct: 298 DTSIRVWDVETGNCIHTLTG-HQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQT 354
Query: 135 YTQPDKVFTMSLC---GEKFVVGTAGR-KVCIWDLRNMGYI 171
P+K + C + FV+ ++ V +WDL+ +I
Sbjct: 355 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 55 AHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCI 112
H D V+ C SG D TLK++ T T++G H + + + D N I
Sbjct: 116 GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRD--NII 172
Query: 113 LTGSWDTSVKMWDPRSSRCVGN-YTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRN---- 167
++GS D ++K+W+ + C+ Y V M L ++ V G+ + +WD+
Sbjct: 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 232
Query: 168 ---MGYIMQRR 175
MG++ R
Sbjct: 233 HVLMGHVAAVR 243
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Query: 5 KTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDC 63
K+ L + IT ++F N +++ S D + ++ +T LR H+ V
Sbjct: 109 KSPKVLKGHDDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 165
Query: 64 CFQDAVHSFSGGLDCTLKMFDFNTQTETVIGT---HDQPIRAVEYSDEVNCILTGSWDTS 120
+D + SG D TLK++ N +T I T H +R + ++ +++GS D +
Sbjct: 166 QMRDNI-IISGSTDRTLKVW--NAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDAT 220
Query: 121 VKMWDPRSSRCVGNYT-QPDKVFTMSLCGEKFVVGTAGRKVCIWD 164
+++WD + +C+ V + G + V G V +WD
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD 265
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 139 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 198 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 258 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 49 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 75 GLDCTLKMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ +T+ G H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 108 SDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 166
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 61/195 (31%)
Query: 73 SGGLDCTLKMFD-FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC 131
S D +K++ ++ + E I H I V +S + N +++ S D ++K+WD S +C
Sbjct: 64 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 123
Query: 132 VGNYT-QPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188
+ + VF + + V G+ V IWD++ +C+K
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKT 168
Query: 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN 248
P PV+A+ F+++ +
Sbjct: 169 LPAHSD------------------------------------------PVSAVHFNRDGS 186
Query: 249 TFATGGSDGYVNIWD 263
+ DG IWD
Sbjct: 187 LIVSSSYDGLCRIWD 201
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 137 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 47 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 75 GLDCTLKMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ +T+ G H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 106 SDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 164
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 61/195 (31%)
Query: 73 SGGLDCTLKMFD-FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC 131
S D +K++ ++ + E I H I V +S + N +++ S D ++K+WD S +C
Sbjct: 62 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 121
Query: 132 VGNYT-QPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188
+ + VF + + V G+ V IWD++ +C+K
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKT 166
Query: 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN 248
P PV+A+ F+++ +
Sbjct: 167 LPAHSD------------------------------------------PVSAVHFNRDGS 184
Query: 249 TFATGGSDGYVNIWD 263
+ DG IWD
Sbjct: 185 LIVSSSYDGLCRIWD 199
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 121 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 31 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 156
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 157 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 262 WD 263
WD
Sbjct: 182 WD 183
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLR 166
+F S+ G K++V G+ V IW+L+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 28 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 115
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 153
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 154 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 262 WD 263
WD
Sbjct: 179 WD 180
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266
+ + G E K YA K G K V+++ F A+ +D + IW ++
Sbjct: 3 QQMGRGSEFVKPNYALK---FTLAGHTK--AVSSVKFSPNGEWLASSSADKLIKIWGAYD 57
Query: 267 KKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
K + GI+ + +S D N+L A
Sbjct: 58 GKFEKTISGHKLGISDVAWSSDSNLLVSA 86
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLR 166
+F S+ G K++V G+ V IW+L+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L ASS D + ++ + + H + D + D+ S
Sbjct: 28 AVSSVKFSPN-GEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 115
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 153
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 154 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 262 WD 263
WD
Sbjct: 179 WD 180
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266
+ + G E K YA K G K V+++ F A +D + IW ++
Sbjct: 3 QQMGRGSEFVKPNYALK---FTLAGHTK--AVSSVKFSPNGEWLAASSADKLIKIWGAYD 57
Query: 267 KKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
K + GI+ + +S D N+L A
Sbjct: 58 GKFEKTISGHKLGISDVAWSSDSNLLVSA 86
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLR 166
+F S+ G K++V G+ V IW+L+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 28 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 115
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 153
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 154 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 262 WD 263
WD
Sbjct: 179 WD 180
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266
+ + G E K YA K G K V+++ F A+ +D + IW ++
Sbjct: 3 QQMGRGSEFVKPNYALK---FTLAGHTK--AVSSVKFSPNGEWLASSSADKLIKIWGAYD 57
Query: 267 KKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
K + GI+ + +S D N+L A
Sbjct: 58 GKFEKTISGHKLGISDVAWSSDSNLLVSA 86
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 132 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 191 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 42 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 101 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 159
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 70 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 129
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 130 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 167
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 168 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 262 WD 263
WD
Sbjct: 193 WD 194
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 121 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 31 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 156
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 157 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 262 WD 263
WD
Sbjct: 182 WD 183
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 116 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 175 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 26 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 85 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 143
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 54 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 113
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 114 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 151
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 152 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 262 WD 263
WD
Sbjct: 177 WD 178
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 120 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 179 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 30 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 89 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 147
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 58 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 117
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 118 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 155
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 156 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 262 WD 263
WD
Sbjct: 181 WD 182
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 115 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 25 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 53 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 112
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 113 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 150
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 151 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 262 WD 263
WD
Sbjct: 176 WD 177
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 115 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 25 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 53 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 112
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 113 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 150
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 151 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 262 WD 263
WD
Sbjct: 176 WD 177
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 121 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 31 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 156
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 157 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 262 WD 263
WD
Sbjct: 182 WD 183
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 114 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 173 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 233 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 24 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 83 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 141
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 52 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 111
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 112 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 149
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 150 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 262 WD 263
WD
Sbjct: 175 WD 176
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 111 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 170 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 230 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 21 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ +C+
Sbjct: 80 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 60/182 (32%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 49 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 108
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201
+ + V G+ V IWD++ +C+K P
Sbjct: 109 CNFNPQSNLIVSGSFDESVRIWDVKT---------------GKCLKTLPAHSD------- 146
Query: 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNI 261
PV+A+ F+++ + + DG I
Sbjct: 147 -----------------------------------PVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 262 WD 263
WD
Sbjct: 172 WD 173
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D ++K+WD +C+ YT
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 28 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ C+
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 115
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLR 166
+ + V G+ V IWD++
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 109/276 (39%), Gaps = 32/276 (11%)
Query: 11 NSPPEDG-ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDC-CFQD 67
+SP D I +V F+P+ +FL + D + ++DI N + + H + F
Sbjct: 118 SSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 68 AVHSFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126
SG D T++++D T Q + D + I GS D +V++WD
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 127 RSSRCV--------GNYTQPDKVFTMSLC--GEKFVVGTAGRKVCIWDLRNMGYIMQRRE 176
+ V D V+++ G+ V G+ R V +W+L+N + +
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN---NKSD 293
Query: 177 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY----------AFKCHR 226
S C + + +VLS + EY+ +G + + + + + HR
Sbjct: 294 SKTPNSGTCEVTYIGHKDFVLS-VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR 352
Query: 227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW 262
+ + + N S EYN FATG D IW
Sbjct: 353 ---NSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVL 292
+ ++ F + ATG D + IWD N+K + ++ I SL + G+ L
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 11/163 (6%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTL 80
F P SN +++ S+D +V ++D+ T L+ AHSDPV F +D S D
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 81 KMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138
+++D + +T+I + P+ V++S IL + D +K+WD +C+ YT
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Query: 139 DK----VFT-MSLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRR 175
+F S+ G K++V G+ V IW+L+ + + +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSG 74
+++VKF+PN ++L +SS D + ++ + + H + D + D+ S
Sbjct: 28 AVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 75 GLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
D TLK++D ++ + + H + ++ + N I++GS+D SV++WD ++ C+
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
++ + E I H I V +S + N +++ S D ++K+WD S +C+ + VF
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 115
Query: 144 MSLCGEK--FVVGTAGRKVCIWDLR 166
+ + V G+ V IWD++
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIA 295
V+++ F A+ +D + IW ++ K + GI+ + +S D N+L A
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 25/286 (8%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDCCFQDAVHSFS-GG 75
I A+ + +S + LL++S D + ++D T N + S V+ C + + + + GG
Sbjct: 58 IYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 76 LDCTLKMFDFNTQTETV-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD-PRSS 129
LD +++ T+ V + H + + D+ N I+T S DT+ +WD
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ 175
Query: 130 RCVGNYTQPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187
+ V ++SL + FV G +WD+R + ++ + + I
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAIC 233
Query: 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247
FPN + S + A D + + M Y+ D I I + ++SF +
Sbjct: 234 FFPNGNAFATGSDD--ATCRLFDLRADQELMTYS-------HDNI--ICGITSVSFSKSG 282
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
G D N+WD R +D ++ L + DG +A
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSG 74
E I A+ F PN N F S D L+D+ + + Y+H + + C S SG
Sbjct: 226 ESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTYSHDNII--CGITSVSFSKSG 282
Query: 75 GL------DCTLKMFD-FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
L D ++D V+ HD + + +D+ + TGSWD+ +K+W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 25/286 (8%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDCCFQDAVHSFS-GG 75
I A+ + +S + LL++S D + ++D T N + S V+ C + + + + GG
Sbjct: 58 IYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 76 LDCTLKMFDFNTQTETV-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD-PRSS 129
LD +++ T+ V + H + + D+ N I+T S DT+ +WD
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ 175
Query: 130 RCVGNYTQPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187
+ V ++SL + FV G +WD+R + ++ + + I
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAIC 233
Query: 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247
FPN + S + A D + + M Y+ D I I + ++SF +
Sbjct: 234 FFPNGNAFATGSDD--ATCRLFDLRADQELMTYS-------HDNI--ICGITSVSFSKSG 282
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
G D N+WD R +D ++ L + DG +A
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSG 74
E I A+ F PN N F S D L+D+ + + Y+H + + C S SG
Sbjct: 226 ESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTYSHDNII--CGITSVSFSKSG 282
Query: 75 GL------DCTLKMFD-FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
L D ++D V+ HD + + +D+ + TGSWD+ +K+W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 25/286 (8%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDCCFQDAVHSFS-GG 75
I A+ + +S + L+++S D + ++D T N + S V+ C + + + + GG
Sbjct: 58 IYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 76 LDCTLKMFDFNTQTETV-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD-PRSS 129
LD +++ T+ V + H + + D+ N I+T S DT+ +WD
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ 175
Query: 130 RCVGNYTQPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187
+ V ++SL + FV G +WD+R + ++ + + I
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAIC 233
Query: 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247
FPN + S + A D + + M Y+ D I I + ++SF +
Sbjct: 234 FFPNGNAFATGSDD--ATCRLFDLRADQELMTYS-------HDNI--ICGITSVSFSKSG 282
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
G D N+WD R +D ++ L + DG +A
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSG 74
E I A+ F PN N F S D L+D+ + + Y+H + + C S SG
Sbjct: 226 ESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTYSHDNII--CGITSVSFSKSG 282
Query: 75 GL------DCTLKMFD-FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
L D ++D V+ HD + + +D+ + TGSWD+ +K+W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 25/286 (8%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDCCFQDAVHSFS-GG 75
I A+ + +S + L+++S D + ++D T N + S V+ C + + + + GG
Sbjct: 58 IYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 76 LDCTLKMFDFNTQTETV-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD-PRSS 129
LD +++ T+ V + H + + D+ N I+T S DT+ +WD
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ 175
Query: 130 RCVGNYTQPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187
+ V ++SL + FV G +WD+R + ++ + + I
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAIC 233
Query: 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247
FPN + S + A D + + M Y+ D I I + ++SF +
Sbjct: 234 FFPNGNAFATGSDD--ATCRLFDLRADQELMTYS-------HDNI--ICGITSVSFSKSG 282
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
G D N+WD R +D ++ L + DG +A
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSG 74
E I A+ F PN N F S D L+D+ + + Y+H + + C S SG
Sbjct: 226 ESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTYSHDNII--CGITSVSFSKSG 282
Query: 75 GL------DCTLKMFD-FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
L D ++D V+ HD + + +D+ + TGSWD+ +K+W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 115/286 (40%), Gaps = 25/286 (8%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYD-ITNNNLRLKYAHSDPVLDCCFQDAVHSFS-GG 75
I A+ + +S + L+++S D + ++D T N + S V+ C + + + + GG
Sbjct: 69 IYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 127
Query: 76 LDCTLKMFDFNTQTETV-----IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD-PRSS 129
LD +++ T+ V + H + + D+ N I+T S DT+ +WD
Sbjct: 128 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ 186
Query: 130 RCVGNYTQPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187
+ V ++SL + FV G +WD+R + ++ + + I
Sbjct: 187 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAIC 244
Query: 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247
FPN + S + A D + + M Y+ D I I + ++SF +
Sbjct: 245 FFPNGNAFATGSDD--ATCRLFDLRADQELMTYS-------HDNI--ICGITSVSFSKSG 293
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
G D N+WD R +D ++ L + DG +A
Sbjct: 294 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 339
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSG 74
E I A+ F PN N F S D L+D+ + + Y+H + + C S SG
Sbjct: 237 ESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTYSHDNII--CGITSVSFSKSG 293
Query: 75 GL------DCTLKMFD-FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
L D ++D V+ HD + + +D+ + TGSWD+ +K+W+
Sbjct: 294 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 25/253 (9%)
Query: 29 QFLLASSWDCNVSLYDITNN-NLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN 86
QF L+ SWD + L+D+ + R H+ VL F D S D T+K+++
Sbjct: 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502
Query: 87 TQTETVIGT----HDQPIRAVEYSDEV--NCILTGSWDTSVKMWDPRSSRCVGNYT-QPD 139
+ + I H + V +S I++ SWD +VK+W+ + +
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG 562
Query: 140 KVFTMSLCGEKFVVGTAGRK--VCIWDLRNMGYIMQRRESSLKFQTRCIK------CFPN 191
V T+++ + + + G+ V +WDL G + E++ C C
Sbjct: 563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEANSVIHALCFSPNRYWLCAAT 621
Query: 192 KQGYVLSSIEGRAAVEYL--DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249
+ G + +E ++ VE L D E +K + + K+ ++++ + +T
Sbjct: 622 EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR-----KVIYCTSLNWSADGST 676
Query: 250 FATGGSDGYVNIW 262
+G +DG + +W
Sbjct: 677 LFSGYTDGVIRVW 689
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 16/195 (8%)
Query: 96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR---SSRCVGNYTQPDKVFTMSLCGEKFV 152
H + V S + L+GSWD +++WD S+R +T+ SL + V
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 153 VGTAGRKVCIWD-LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT 211
+ R + +W+ L Y + + C++ PN + S V+ +
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 212 GPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC 271
K++ H V+ ++ + + A+GG DG V +WD K+L
Sbjct: 549 --SNCKLRSTLAGHTGY---------VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597
Query: 272 QFHRYDTGITSLCFS 286
++ I +LCFS
Sbjct: 598 SLEA-NSVIHALCFS 611
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 110/296 (37%), Gaps = 46/296 (15%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQDAVHSFSG-G 75
+T V F P + ++++S D + ++D + R H+D V D F + +
Sbjct: 111 VTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 76 LDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN 134
D T+K++DF + + HD + +V + I++ S D ++KMW+ ++ CV
Sbjct: 170 ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT 229
Query: 135 YT-----------QPDKVFTMSLCGEKFV-VGTAGRKVCIWDLRNMGYIMQRRESSLKFQ 182
+T D S ++ V V K C +LR ++++
Sbjct: 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE--------- 280
Query: 183 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP----- 237
CI P +S G + GP + R K + +
Sbjct: 281 --CISWAPESSYSSISEATGSETKKSGKPGP------FLLSGSRDKTIKMWDVSTGMCLM 332
Query: 238 --------VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF 285
V + FH + D + +WD NK+ + + ++ +TSL F
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 72 FSGGLDCTLKMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS 129
SG D T+KM+D +T T++G HD +R V + IL+ + D ++++WD ++
Sbjct: 312 LSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Query: 130 RCVGNYTQPDKVFTMSLCGEK----FVVGTAGRKVCIWDLR 166
RC+ + F SL K V G+ + V +W+ R
Sbjct: 371 RCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 112 ILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSL--CGEKFVVGTAGRKVC-IWDLRNM 168
+L+GS D ++KMWD + C+ D L G KF++ A K +WD +N
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN- 369
Query: 169 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK 219
RC+K N + ++S++ Y+ TG Q +K
Sbjct: 370 --------------KRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 30/151 (19%)
Query: 164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM----- 218
D + G + ++ S ++ Q + ++ L S A E+ GP QK
Sbjct: 44 DKKYAGLLEKKWTSVIRLQKKVME---------LESKLNEAKEEFTSGGPLGQKRDPKEW 94
Query: 219 ------KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ 272
KYA HR PV + FH ++ + D + +WD
Sbjct: 95 IPRPPEKYALSGHR---------SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT 145
Query: 273 FHRYDTGITSLCFSYDGNVLAIACSYNYELE 303
+ + + F + G +LA +CS + ++
Sbjct: 146 LKGHTDSVQDISFDHSGKLLA-SCSADMTIK 175
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVL--DCCFQDAVHSF-S 73
++A F NS+ +L +S D +L+D+ + L + H VL D + ++F S
Sbjct: 157 LSACSF-TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 74 GGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
GG D ++D + Q TH+ + +V Y + +GS D + +++D R+ R V
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Query: 133 GNYTQPDKVFT-----MSLCGEKFVVGTAGRKVCIWDL 165
Y++ +F SL G G + +WD+
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/287 (20%), Positives = 121/287 (42%), Gaps = 34/287 (11%)
Query: 31 LLASSWDCNVSLYDITNNNLRLKYAHSDP---VLDCCFQDAVHSFS-GGLD--CTLKMFD 84
+++SS D V ++D N ++A + P V+ C + + + + GGLD C++
Sbjct: 79 IVSSSQDGKVIVWDSFTTNK--EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136
Query: 85 FN-----TQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY-TQP 138
F+ + + H + A +++ ILT S D + +WD S + + ++
Sbjct: 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG 196
Query: 139 DKVFTMSLC----GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQG 194
V + L G FV G +K +WD+R+ G +Q E+ + ++ +P+
Sbjct: 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETH-ESDVNSVRYYPSGDA 254
Query: 195 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG 254
+ S + A D + + Y+ KE I+ +++ F G
Sbjct: 255 FASGSDD--ATCRLYDLRADREVAIYS------KE---SIIFGASSVDFSLSGRLLFAGY 303
Query: 255 SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE 301
+D +N+WD R+ ++ +++L S DG CS +++
Sbjct: 304 NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF---CSGSWD 347
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHS--- 71
E + +V++ P+ + F S D LYD+ + Y+ + D S
Sbjct: 240 ESDVNSVRYYPSGDAFASGSD-DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298
Query: 72 -FSGGLDCTLKMFD-FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMW 124
F+G D T+ ++D +++ H+ + + S + +GSWD ++++W
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 28/233 (12%)
Query: 65 FQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRA-------VEYSDEVNCILTGSW 117
F D + S D T+ M+ T+ ET G + +R V S + L+GSW
Sbjct: 50 FPDMI--LSASRDKTIIMWKL-TRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106
Query: 118 DTSVKMWD----PRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQ 173
D ++++WD + R VG +T+ S + V G+ + + +W+ +
Sbjct: 107 DGTLRLWDLTTGTTTRRFVG-HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165
Query: 174 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233
+ ES ++ C++ PN ++ S V+ + ++K + I
Sbjct: 166 QDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKV-----------WNLANCKLKTNHIG 213
Query: 234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS 286
+N ++ + + A+GG DG +WD K L D I +LCFS
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFS 265
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 29 QFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF-QDAVHSFSGGLDCTLKMFD-- 84
QF L+ SWD + L+D+T ++ H+ VL F D SG D T+K+++
Sbjct: 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158
Query: 85 ----FNTQTETVIGTHDQPIRAVEYSDEVN--CILTGSWDTSVKMWDPRSSRCVGN---Y 135
+ Q E +H + + V +S + I++ WD VK+W+ + + N +
Sbjct: 159 GVCKYTVQDE----SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 214
Query: 136 TQPDKVFTMSLCGEKFVVGTAGRKVCIWDL 165
T T+S G G + +WDL
Sbjct: 215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 28/233 (12%)
Query: 65 FQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRA-------VEYSDEVNCILTGSW 117
F D + S D T+ M+ T+ ET G + +R V S + L+GSW
Sbjct: 27 FPDMI--LSASRDKTIIMWKL-TRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 83
Query: 118 DTSVKMWD----PRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQ 173
D ++++WD + R VG +T+ S + V G+ + + +W+ +
Sbjct: 84 DGTLRLWDLTTGTTTRRFVG-HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 142
Query: 174 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233
+ ES ++ C++ PN ++ S V+ + ++K + I
Sbjct: 143 QDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKV-----------WNLANCKLKTNHIG 190
Query: 234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS 286
+N ++ + + A+GG DG +WD K L D I +LCFS
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFS 242
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 29 QFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF-QDAVHSFSGGLDCTLKMFD-- 84
QF L+ SWD + L+D+T ++ H+ VL F D SG D T+K+++
Sbjct: 76 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 135
Query: 85 ----FNTQTETVIGTHDQPIRAVEYSDEVN--CILTGSWDTSVKMWDPRSSRCVGN---Y 135
+ Q E +H + + V +S + I++ WD VK+W+ + + N +
Sbjct: 136 GVCKYTVQDE----SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 191
Query: 136 TQPDKVFTMSLCGEKFVVGTAGRKVCIWDL 165
T T+S G G + +WDL
Sbjct: 192 TGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 64 CFQ-DAVHSFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
C Q D SG D T+K++D NT + + ++ H + ++Y + V I+TGS D++V
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTV 195
Query: 122 KMWDPRSSRCVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR 175
++WD + + + V + V + R + +WD+ + I RR
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 68/144 (47%), Gaps = 7/144 (4%)
Query: 27 SNQFLLASSWDCNVSLYDI---TNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMF 83
+N ++ S D +++++D+ T+ LR ++ D + S D T+K++
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281
Query: 84 DFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKV 141
+ +T + + H + I ++Y D + +++GS D ++++WD C+ + V
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELV 339
Query: 142 FTMSLCGEKFVVGTAGRKVCIWDL 165
+ ++ V G K+ +WDL
Sbjct: 340 RCIRFDNKRIVSGAYDGKIKVWDL 363
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 58/288 (20%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LRLKYAHSDPVLDCCF-QDAVH 70
+T++ + LL++S D + + +T ++ +R HS V DC D +
Sbjct: 14 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 73
Query: 71 SFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS 129
+ S D TL+++D T +T H + +V+ + + I++GS D ++K+W +
Sbjct: 74 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G 132
Query: 130 RCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCF 189
+C+ +L G ++ Q ++
Sbjct: 133 QCLA-----------TLLGHN------------------DWVSQ------------VRVV 151
Query: 190 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249
PN++ +V + G + + +I+ D I +N ++ +
Sbjct: 152 PNEKA-------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 204
Query: 250 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
A+ G DG + +W+ KK + D + SL FS + LA A +
Sbjct: 205 IASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA 251
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 58/288 (20%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LRLKYAHSDPVLDCCF-QDAVH 70
+T++ + LL++S D + + +T ++ +R HS V DC D +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 71 SFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS 129
+ S D TL+++D T +T H + +V+ + + I++GS D ++K+W +
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G 138
Query: 130 RCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCF 189
+C+ +L G ++ Q ++
Sbjct: 139 QCLA-----------TLLGHN------------------DWVSQ------------VRVV 157
Query: 190 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249
PN++ +V + G + + +I+ D I +N ++ +
Sbjct: 158 PNEKA-------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 250 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
A+ G DG + +W+ KK + D + SL FS + LA A +
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA 257
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 20 AVKFAPNSNQFLLASSWDCNVSLYDI--TNNNLRLKYA------HSDPVLDCCFQDAVHS 71
+ + PN N +LL++S D + L+DI T R+ A H+ V D + S
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVE-YSDEVNC----------ILTGSWDTS 120
G + K+ ++T+ +P V+ ++ EVNC + TGS D +
Sbjct: 246 LFGSVADDQKLMIWDTRNNNT----SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 301
Query: 121 VKMWDPRSSRCVGN--YTQPDKVFTMSLCGE-KFVVGTAG--RKVCIWDLRNMG 169
V +WD R+ + + + D++F + + ++ ++G R++ +WDL +G
Sbjct: 302 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 20 AVKFAPNSNQFLLASSWDCNVSLYDI--TNNNLRLKYA------HSDPVLDCCFQDAVHS 71
+ + PN N +LL++S D + L+DI T R+ A H+ V D + S
Sbjct: 188 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 247
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVE-YSDEVNC----------ILTGSWDTS 120
G + K+ ++T+ +P V+ ++ EVNC + TGS D +
Sbjct: 248 LFGSVADDQKLMIWDTRNNNT----SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 303
Query: 121 VKMWDPRSSRCVGNY--TQPDKVFTMSLCGE-KFVVGTAG--RKVCIWDLRNMG 169
V +WD R+ + + + D++F + + ++ ++G R++ +WDL +G
Sbjct: 304 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 357
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 58/288 (20%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LRLKYAHSDPVLDCCF-QDAVH 70
+T++ + LL++S D + + +T ++ +R HS V DC D +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 71 SFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS 129
+ S D TL+++D T +T H + +V+ + + I++GS D ++K+W +
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G 138
Query: 130 RCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCF 189
+C+ +L G ++ Q ++
Sbjct: 139 QCLA-----------TLLGHN------------------DWVSQ------------VRVV 157
Query: 190 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249
PN++ +V + G + + +I+ D I +N ++ +
Sbjct: 158 PNEKA-------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 250 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
A+ G DG + +W+ KK + D + SL FS + LA A +
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA 257
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 20 AVKFAPNSNQFLLASSWDCNVSLYDI--TNNNLRLKYA------HSDPVLDCCFQDAVHS 71
+ + PN N +LL++S D + L+DI T R+ A H+ V D + S
Sbjct: 190 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 249
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVE-YSDEVNC----------ILTGSWDTS 120
G + K+ ++T+ +P V+ ++ EVNC + TGS D +
Sbjct: 250 LFGSVADDQKLMIWDTRNNNT----SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 305
Query: 121 VKMWDPRSSRCVGNY--TQPDKVFTMSLCGE-KFVVGTAG--RKVCIWDLRNMG 169
V +WD R+ + + + D++F + + ++ ++G R++ +WDL +G
Sbjct: 306 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 359
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 58/288 (20%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LRLKYAHSDPVLDCCF-QDAVH 70
+T++ + LL++S D + + +T ++ +R HS V DC D +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 71 SFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS 129
+ S D TL+++D T +T H + +V+ + + I++GS D ++K+W +
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G 138
Query: 130 RCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCF 189
+C+ +L G ++ Q ++
Sbjct: 139 QCLA-----------TLLGHN------------------DWVSQ------------VRVV 157
Query: 190 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249
PN++ +V + G + + +I+ D I +N ++ +
Sbjct: 158 PNEKA-------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 250 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
A+ G DG + +W+ KK + D + SL FS + LA A +
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA 257
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 58/288 (20%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LRLKYAHSDPVLDCCF-QDAVH 70
+T++ + LL++S D + + +T ++ +R HS V DC D +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 71 SFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS 129
+ S D TL+++D T +T H + +V+ + + I++GS D ++K+W +
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G 138
Query: 130 RCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCF 189
+C+ +L G ++ Q ++
Sbjct: 139 QCLA-----------TLLGHN------------------DWVSQ------------VRVV 157
Query: 190 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249
PN++ +V + G + + +I+ D I +N ++ +
Sbjct: 158 PNEKA-------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 250 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
A+ G DG + +W+ KK + D + SL FS + LA A +
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA 257
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LRLKYAHSDPVLDCCF-QDAVH 70
+T++ + LL++S D + + +T ++ +R HS V DC D +
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY 79
Query: 71 SFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMW 124
+ S D TL+++D T +T H + +V+ + + I++GS D ++K+W
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 16/189 (8%)
Query: 113 LTGSWDTSVKMWDPRSS----RCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM 168
L+ SWD ++++WD + R VG+ + V + + G+ + + +W ++
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSV-DIDKKASXIISGSRDKTIKVWTIKGQ 139
Query: 169 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK 228
+ Q R + PN++ +V + G + + +I+
Sbjct: 140 CLATLLGHNDWVSQVRVV---PNEKA-------DDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 288
D I +N ++ + A+ G DG + +W+ KK D + SL FS +
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSPN 248
Query: 289 GNVLAIACS 297
LA A +
Sbjct: 249 RYWLAAATA 257
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 31 LLASSWDCNVSLYDITNNNLRLKYAHSDPVLDC-------CFQDAVHSFSGGLDCTLKMF 83
+++ S D + ++ I L H+D V D+V S G D +K +
Sbjct: 122 IISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 84 DFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVF 142
+ N Q E H+ I + S + I + D + +W+ + + + D+VF
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF 241
Query: 143 TMSLCGEKFVVGTA 156
+++ ++ + A
Sbjct: 242 SLAFSPNRYWLAAA 255
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 96 HDQPIRAVEYSDEVNCI-LTGSWDTSVKMWDPRSS----RCVGNYTQPDKVFTMSLCGEK 150
H+ + + S E NC ++ SWD ++++WD R+ R VG+ ++ V++++ +
Sbjct: 75 HNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE---VYSVAFSPDN 130
Query: 151 FVVGTAG--RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP-----NK-QGYV--LSSI 200
+ +AG R++ +W++ + + C++ P NK Q + +S+
Sbjct: 131 RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 201 EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN 260
++ +T + ++Y FK H VN +S ATGG D +
Sbjct: 191 GWDGRLKVWNTNFQ---IRYTFKAHESN---------VNHLSISPNGKYIATGGKDKKLL 238
Query: 261 IWDGFN 266
IWD N
Sbjct: 239 IWDILN 244
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 17/160 (10%)
Query: 28 NQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF 85
N F ++SSWD + L+D+ T + H V F D S G + +K+++
Sbjct: 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Query: 86 NTQ---TETVIGTHDQPIRAVEYSDEVNC----------ILTGSWDTSVKMWDPRSSRCV 132
+ + H + V YS + + WD +K+W+
Sbjct: 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY 207
Query: 133 GNYTQPDKVFTMSLC--GEKFVVGTAGRKVCIWDLRNMGY 170
V +S+ G+ G +K+ IWD+ N+ Y
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 25/141 (17%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNN---NLRLKYAHSD--------PVLDCCFQ 66
+ +V F+P++ Q L A + + + L++I + K HSD P++
Sbjct: 121 VYSVAFSPDNRQILSAGA-EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA-- 177
Query: 67 DAVHSF-----SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
+ V F S G D LK+++ N Q H+ + + S I TG D +
Sbjct: 178 NKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237
Query: 122 KMWDPRSSRCVGNYTQPDKVF 142
+WD + N T P + F
Sbjct: 238 LIWD------ILNLTYPQREF 252
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--------AHSDPVLDCCFQDAVHS 71
+ + PN + LL++S D + L+DI+ K H+ V D + S
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 241
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVE-YSDEVNCI----------LTGSWDTS 120
G + K+ ++T++ +P +V+ ++ EVNC+ TGS D +
Sbjct: 242 LFGSVADDQKLMIWDTRSNNT----SKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297
Query: 121 VKMWDPRSSRCVGNY--TQPDKVFTMSLCGE-KFVVGTAG--RKVCIWDLRNMG 169
V +WD R+ + + + D++F + + ++ ++G R++ +WDL +G
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 26 NSNQFLLASSWDCNVSLYDITNNNLRLKY--------AHSDPVLDCCFQDAVHSFSGGLD 77
N + LL++S D V L+DI K HS V D + S G +
Sbjct: 190 NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 249
Query: 78 CTLKMFDFNTQTETVIGTHDQPIRAVE-YSDEVNCI----------LTGSWDTSVKMWDP 126
K+ ++T++ T +P V+ ++ EVNC+ TGS D +V +WD
Sbjct: 250 DDQKLMIWDTRSNTT----SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
Query: 127 RSSRCVGNY--TQPDKVFTMSLCGE-KFVVGTAG--RKVCIWDLRNMG 169
R+ + + + D++F + + ++ ++G R++ +WDL +G
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 24/215 (11%)
Query: 95 THDQPIRAVEYS----DEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK---VFTMSLC 147
HD I +V + + ++TGS D VK+W R R ++ V ++ +
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 148 GEKFVVGTAG--RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA 205
+ ++ + +WDL N I + T P+ Q + G+
Sbjct: 90 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVN 147
Query: 206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF 265
+ G E K +Y+ + + +I++ + A+G DG +NI+D
Sbjct: 148 I----FGVESGKKEYSLDT---------RGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 266 NKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY 300
K L + I SL FS D +L A Y
Sbjct: 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 32/228 (14%)
Query: 50 LRLKYAHSDPVLDCCF-----QDAVHSFSGGLDCTLKMFDFNTQ---TETVIGTHDQPIR 101
+ + AH D + + +++ +G LD +K++ + + + + H +
Sbjct: 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV 84
Query: 102 AVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY-TQPDKVFTMSLC--GEKFVVGTAGR 158
+V+ S + + S D +++WD + + + + P +T++ + GT
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG 144
Query: 159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCF---PNKQGYVLSSIEGRAAVEYLDTGPEM 215
KV I G ++E SL + + I P+ + +I+G + + TG
Sbjct: 145 KVNI-----FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG--- 196
Query: 216 QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD 263
K+ + + H + P+ +++F + T DGY+ I+D
Sbjct: 197 -KLLHTLEGHAM---------PIRSLTFSPDSQLLVTASDDGYIKIYD 234
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 28/168 (16%)
Query: 26 NSNQFLLASSWDCNVSLYDITNNNLRLKY--------AHSDPVLDCCFQDAVHSFSGGLD 77
N + LL++S D V L+DI K HS V D + S G +
Sbjct: 190 NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 249
Query: 78 CTLKMFDFNTQTETVIGTHDQPIRAVE-YSDEVNCI----------LTGSWDTSVKMWDP 126
K+ ++T++ T +P V+ ++ EVNC+ TGS D +V +WD
Sbjct: 250 DDQKLXIWDTRSNTT----SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
Query: 127 RSSRCVGNY--TQPDKVFTMSLCGE-KFVVGTAG--RKVCIWDLRNMG 169
R+ + + + D++F + + ++ ++G R++ +WDL +G
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 14/176 (7%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHS-----F 72
I + K P+ ++ +S++D+ R+K A C+ A+ F
Sbjct: 100 IRSCKLLPDGCTLIVGGE-ASTLSIWDLAAPTPRIK-AELTSSAPACYALAISPDSKVCF 157
Query: 73 SGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC 131
S D + ++D + QT H ++ S++ + TG D +V+ WD R R
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217
Query: 132 VGNYTQPDKVFTMSLC--GEKFVVGTAGRKVCIWDL-RNMGYIMQRRES---SLKF 181
+ + ++F++ C GE VG V + + + Y + ES SLKF
Sbjct: 218 LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 13/170 (7%)
Query: 126 PRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRK-VCIWDLRNMGYIMQRRESSLKFQTR 184
PR +R + + V +++ V T G+ V +WD+ + G S Q
Sbjct: 39 PRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG------NKSPVSQLD 92
Query: 185 CIKCFPNKQGYVLSS--IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS 242
C+ N+ Y+ S + + + A RIK + A++
Sbjct: 93 CL----NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 243 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVL 292
+ + SDG + +WD N+ + QF + G + + S DG L
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 26/132 (19%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-----KYAHSDPVLD-CCFQDA 68
E G+T V + S + +L +S V L++I L KY H D V F D
Sbjct: 94 EAGVTDVAWV--SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG 151
Query: 69 VHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCI----------LTGSWD 118
+ SGG D ++K++D + + V+ +++ +S EVNC+ L+ D
Sbjct: 152 TQAVSGGKDFSVKVWDLSQK--AVLKSYNA------HSSEVNCVAACPGKDTIFLSCGED 203
Query: 119 TSVKMWDPRSSR 130
+ +WD R +
Sbjct: 204 GRILLWDTRKPK 215
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/263 (18%), Positives = 103/263 (39%), Gaps = 38/263 (14%)
Query: 29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLK------- 81
++ + S D ++ L+D++N + PV F + F LD +K
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146
Query: 82 -MFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMW-----DPRSSR--CVG 133
+ ++ T + ++PI + + ++ W T K D + S+
Sbjct: 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Query: 134 NYTQPDKV-----------FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQ 182
NY D + F+ L F+ + + D+ + ++++ E+
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSPDLT--YFITSSRDTNSFLVDVSTL-QVLKKYETDCPLN 263
Query: 183 TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY----PV 238
T I P K+ +L G+ A + T K + F H+I E+ I ++ P+
Sbjct: 264 TAVIT--PLKEFIILGG--GQEAKDVTTTSANEGKFEARF-YHKIFEEEIGRVQGHFGPL 318
Query: 239 NAISFHQEYNTFATGGSDGYVNI 261
N ++ + ++A+GG DG++ +
Sbjct: 319 NTVAISPQGTSYASGGEDGFIRL 341
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 93 IGTHDQPIRAVEYSDEVNCI----LTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSL 146
+GT D + +S +V+C +TGS D S+K+WD + +CV + P V S
Sbjct: 67 LGTLDGHTGTI-WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP 125
Query: 147 CGEKFVV 153
CG F+
Sbjct: 126 CGNYFLA 132
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY-TQPDKVFTMSL-CGEKF-V 152
H++P+ V+Y+ E + + + S D+S +W + +G ++++ + C K+ V
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCV 90
Query: 153 VGTAGRKVCIWDLRN 167
G+A + +WD+ N
Sbjct: 91 TGSADYSIKLWDVSN 105
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
E N TG D + ++D NKK L Q +D G+ +L +++ G +++
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 92 VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCGEK 150
V+ H +R V S N +++GS+D ++ +WD +C+ + D++++ E+
Sbjct: 265 VLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322
Query: 151 F--VVGTAGRKVCIWDLRN--MGYIMQ 173
+ + + IWDL N + Y +Q
Sbjct: 323 KRCISASMDTTIRIWDLENGELMYTLQ 349
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-NLRLKY-AHSDPVLDCCF--QDAVHS 71
D I ++ P + ++L+ S D V L++ NN L + H V+ F +D
Sbjct: 98 DYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSD-----EVNCILTGSWDTSVKMWDP 126
SG LD T+K++ T T Q R V Y D + ++T S D ++K+WD
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 127 RSSRCVG 133
++ CV
Sbjct: 216 QTKSCVA 222
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 74 GGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
G D +++F++NT + V H IR++ +L+GS D +VK+W+ ++ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 133 GNYTQPDKVFTMSLC-----GEKFVVGTAGRKVCIWDL 165
+ + F M + F G R V +W L
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-NLRLKY-AHSDPVLDCCF--QDAVHS 71
D I ++ P + ++L+ S D V L++ NN L + H V+ F +D
Sbjct: 98 DYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSD-----EVNCILTGSWDTSVKMWDP 126
SG LD T+K++ T T Q R V Y D + ++T S D ++K+WD
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 127 RSSRCVG 133
++ CV
Sbjct: 216 QTKSCVA 222
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 74 GGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
G D +++F++NT + V H IR++ +L+GS D +VK+W+ ++ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 133 GNYTQPDKVFTMSLC-----GEKFVVGTAGRKVCIWDL 165
+ + F M + F G R V +W L
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-NLRLKY-AHSDPVLDCCF--QDAVHS 71
D I ++ P + ++L+ S D V L++ NN L + H V+ F +D
Sbjct: 98 DYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSD-----EVNCILTGSWDTSVKMWDP 126
SG LD T+K++ T T Q R V Y D + ++T S D ++K+WD
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 127 RSSRCVG 133
++ CV
Sbjct: 216 QTKSCVA 222
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 74 GGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
G D +++F++NT + V H IR++ +L+GS D +VK+W+ ++ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 133 GNYTQPDKVFTMSLC-----GEKFVVGTAGRKVCIWDL 165
+ + F M + F G R V +W L
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
E N TG D + ++D NKK L Q +D G+ +L +++ G +++
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 92 VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCGEK 150
V+ H +R V S N +++GS+D ++ +WD +C+ + D++++ E+
Sbjct: 265 VLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER 322
Query: 151 F--VVGTAGRKVCIWDLRN--MGYIMQ 173
+ + + IWDL N + Y +Q
Sbjct: 323 KRCISASXDTTIRIWDLENGELXYTLQ 349
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-NLRLKY-AHSDPVLDCCF--QDAVHS 71
D I ++ P + ++L+ S D V L++ NN L + H V+ F +D
Sbjct: 98 DYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSD-----EVNCILTGSWDTSVKMWDP 126
SG LD T+K++ T T Q R V Y D + ++T S D ++K+WD
Sbjct: 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQE-RGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 127 RSSRCVG 133
++ CV
Sbjct: 216 QTKSCVA 222
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 74 GGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
G D +++F++NT + V H IR++ +L+GS D +VK+W+ ++ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 133 GNYTQPDKVFTMSLC-----GEKFVVGTAGRKVCIWDL 165
+ + F M + F G R V +W L
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSF 72
+T + F+P+S FL + S DC++++ D + + L AH D V D + HS
Sbjct: 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSL 314
>pdb|3MTJ|A Chain A, The Crystal Structure Of A Homoserine Dehydrogenase From
Thiobacillus Denitrificans To 2.15a
Length = 444
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 26 NSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFS 73
++ F+L+ D + D+ RL YA +DP D DA H +
Sbjct: 166 GTSNFILSEXRDKGAAFDDVLKEAQRLGYAEADPTFDIEGIDAAHKLT 213
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 89/218 (40%), Gaps = 36/218 (16%)
Query: 96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV--GNYTQPDKVFTMSLCGEKFVV 153
H + + ++++ + +++ S D +++W+ + +C+ + + K F + L + +
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRL-LKNSRLLS 1066
Query: 154 GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP 213
+ V +W++ I +E K F QG VLS A ++ T
Sbjct: 1067 WSFDGTVKVWNI-----ITGNKE----------KDFVCHQGTVLSCDISHDATKFSSTSA 1111
Query: 214 EMQKMKYAFKC----HRIK-EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK 268
+ ++F H ++ +G V +F + ATG +G + IW+ N +
Sbjct: 1112 DKTAKIWSFDLLLPLHELRGHNGC-----VRCSAFSVDSTLLATGDDNGEIRIWNVSNGE 1166
Query: 269 --RLCQ------FHRYDTGITSLCFSYDGNVLAIACSY 298
LC + +T LCFS DG +L A Y
Sbjct: 1167 LLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGY 1204
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 18/88 (20%)
Query: 55 AHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNC--- 111
AH D VL CC F K+ +N+ T ++ T+D E+S++VNC
Sbjct: 661 AHEDEVL-CCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD------EHSEQVNCCHF 713
Query: 112 --------ILTGSWDTSVKMWDPRSSRC 131
+ TGS D +K+WD C
Sbjct: 714 TNSSHHLLLATGSSDCFLKLWDLNQKEC 741
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 169 GYIMQRRESSLKFQTRCIKCFPNKQGYV--------LSSIEGRAAVEYLDTGPEMQKMKY 220
GY+ R + L +T CI+ + K+G V + I +A LD+ + + K
Sbjct: 15 GYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKA---LLDSSYKYHEAKE 71
Query: 221 AFKCHRIKEDGI 232
AFK H I+ G+
Sbjct: 72 AFKVHGIEAKGV 83
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 20/89 (22%)
Query: 55 AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNC-- 111
AH D VL C F D + + D +K++D + T ++ T+D E+S++VNC
Sbjct: 662 AHEDEVLCCAFSSDDSYIATCSADKKVKIWD--SATGKLVHTYD------EHSEQVNCCH 713
Query: 112 ---------ILTGSWDTSVKMWDPRSSRC 131
+ TGS D +K+WD C
Sbjct: 714 FTNKSNHLLLATGSNDFFLKLWDLNQKEC 742
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 20/89 (22%)
Query: 55 AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNC-- 111
AH D VL C F D + + D +K++D + T ++ T+D E+S++VNC
Sbjct: 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWD--SATGKLVHTYD------EHSEQVNCCH 706
Query: 112 ---------ILTGSWDTSVKMWDPRSSRC 131
+ TGS D +K+WD C
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQKEC 735
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 18 ITAVKFAP-NSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPV-LDCCFQDAVHS---- 71
IT +KF P N+NQF ASS + L D N LR+ +A SD + + C D S
Sbjct: 168 ITGLKFNPLNTNQF-YASSMEGTTRLQDFKGNILRV-FASSDTINIWFCSLDVSASSRMV 225
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSR 130
+G + + + + + + H + + V + + L T S D +VK+WD R R
Sbjct: 226 VTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 285
Query: 131 CVGNY 135
++
Sbjct: 286 GKASF 290
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 18 ITAVKFAP-NSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPV-LDCCFQDAVHS---- 71
IT +KF P N+NQF ASS + L D N LR+ +A SD + + C D S
Sbjct: 167 ITGLKFNPLNTNQF-YASSMEGTTRLQDFKGNILRV-FASSDTINIWFCSLDVSASSRMV 224
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSR 130
+G + + + + + + H + + V + + L T S D +VK+WD R R
Sbjct: 225 VTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284
Query: 131 CVGNY 135
++
Sbjct: 285 GKASF 289
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 18 ITAVKFAP-NSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPV-LDCCFQDAVHS---- 71
IT +KF P N+NQF ASS + L D N LR+ +A SD + + C D S
Sbjct: 167 ITGLKFNPLNTNQF-YASSMEGTTRLQDFKGNILRV-FASSDTINIWFCSLDVSASSRMV 224
Query: 72 FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSR 130
+G + + + + + + H + + V + + L T S D +VK+WD R R
Sbjct: 225 VTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284
Query: 131 CVGNY 135
++
Sbjct: 285 GKASF 289
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 52/232 (22%)
Query: 72 FSGGLDCTLKMFDFNTQTETV---------IG-----THDQPIRAVE-YSDEVNCILTGS 116
SGG D + ++D + IG H + V+ Y + + S
Sbjct: 60 LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119
Query: 117 WDTSVKMWDPRSSRCVGNYTQPDKVFT--MSLCGEK---FVVGTAGRKVCIWDLR--NMG 169
+D ++K+WD + + + + V++ MS K VGT G KV + DL+ +
Sbjct: 120 FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179
Query: 170 YIMQ-RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT--------------GPE 214
+I+Q R+ L + + Y+L++ + V+ D G +
Sbjct: 180 HILQGHRQEILAVS------WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233
Query: 215 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266
Q ++ A H K VN + F + T G+D + +W+ N
Sbjct: 234 SQAVESANTAHNGK---------VNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 27/121 (22%)
Query: 92 VIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWD-PRSSRCV----------------G 133
++ H Q I AV +S + IL T S D+ VK+WD R+S C+
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Query: 134 NYTQPDKVFTMSLCGEKFVVGTAG--RKVCIWD-------LRNMGYIMQRRESSLKFQTR 184
N KV + + + T G ++ +W+ L N G + + LKF
Sbjct: 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300
Query: 185 C 185
C
Sbjct: 301 C 301
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 29/168 (17%)
Query: 112 ILTGSWDTSVKMWDPRSSRCVGNYTQPDK----------VFTMSLCGEKFVV--GTAGRK 159
I+TGS D +VK+WDPR +P + F + E+ VV G
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK----QGYVLSSIEGRAAVEYLDTG-PE 214
+ ++DLRNM R E+++K C F K V +S+EG+ V + T P
Sbjct: 192 IKLFDLRNMAL---RWETNIK-NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247
Query: 215 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW 262
+ K H+ ++ V + ++E F T G G +++W
Sbjct: 248 KGFASVSEKAHK------STVWQVRHLPQNREL--FLTAGGAGGLHLW 287
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF 285
++++++ +E N A G S V +WD +KRL + + SL +
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW 197
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF 285
++++++ +E N A G S V +WD +KRL + + SL +
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW 208
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD--PVLDCCFQ----DAVHSFSG 74
V+F+P+S +F++ D +S +D + LKY D PV F D+ +
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWLDSQKFATV 270
Query: 75 GLDCTLKMFDFNT 87
G D T++++D T
Sbjct: 271 GADATIRVWDVTT 283
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD--PVLDCCFQ----DAVHSFSG 74
V+F+P+S +F++ D +S +D + LKY D PV F D+ +
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWLDSQKFATV 270
Query: 75 GLDCTLKMFDFNT 87
G D T++++D T
Sbjct: 271 GADATIRVWDVTT 283
>pdb|1B2P|A Chain A, Native Mannose-Specific Bulb Lectin From Scilla
Campanulata (Bluebell) At 1.7 Angstroms Resolution
pdb|1B2P|B Chain B, Native Mannose-Specific Bulb Lectin From Scilla
Campanulata (Bluebell) At 1.7 Angstroms Resolution
Length = 119
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 53 KYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT-ETVIGTHDQPIRAVEYSDEVNC 111
+ H+ L+ F V+ F DC L ++D N T G RAV D V
Sbjct: 15 QILHATESLEILFGTHVYRFIMQTDCNLVLYDNNNPIWATNTGGLGNGCRAVLQPDGVLV 74
Query: 112 ILTGSWDTSVKMWDPRSSRCVGNYT---QPDK 140
++T + +V +W + G+Y QPD+
Sbjct: 75 VIT---NENVTVWQSPVAGKAGHYVLVLQPDR 103
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 23/128 (17%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSD------PVLDCCFQD 67
E I +VKF P+ +F S D L+D+ T + L++ D P++
Sbjct: 249 EGDINSVKFFPDGQRFGTGSD-DGTCRLFDMRTGHQLQVYNREPDRNDNELPIV----TS 303
Query: 68 AVHSFSGGL--------DCTL---KMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGS 116
S SG L DC + + + T+ +H+ I + S + + + TGS
Sbjct: 304 VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363
Query: 117 WDTSVKMW 124
WD ++K+W
Sbjct: 364 WDKNLKIW 371
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF 285
++++++ +E N A G S V +WD +KRL + + SL +
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW 117
>pdb|3FEZ|A Chain A, Crystal Structure Of Uncharacterized Ferredoxin Fold
Protein Related To Antibiotic Biosynthesis
Monooxygenases (Yp_014836.1) From Listeria Monocytogenes
4b F2365 At 2.10 A Resolution
Length = 186
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 15/65 (23%)
Query: 9 SLNSPPEDGITAVKF--APNSNQFLLASSWDCNVSLYD---------ITN----NNLRLK 53
SL+ G+ + K A N N+FL+ S WD V +D ITN NN +
Sbjct: 110 SLHFSETPGLQSTKLTKAXNXNKFLIISFWDSEVFFHDWKKTPLSKEITNIXKKNNTQSG 169
Query: 54 YAHSD 58
++H D
Sbjct: 170 FSHED 174
>pdb|3FJ2|A Chain A, Crystal Structure Of A Monooxygenase-Like Protein
(Lin2316) From Listeria Innocua At 1.85 A Resolution
Length = 186
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 9 SLNSPPEDGITAVKF--APNSNQFLLASSWDCNVSLY---------DITN----NNLRLK 53
SL+ G+ + K A N+NQFL+ S WD V +IT+ NN ++
Sbjct: 110 SLHFSETPGLQSTKLTKAXNTNQFLIVSFWDSEVFFQEWKKTPLHKEITSIXKKNNTQVG 169
Query: 54 YAHSD 58
++H D
Sbjct: 170 FSHED 174
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 73 SGGLDCTLKMFDFNTQTETVIGT-----HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR 127
+G D +K+ T+I H + IR+V + + + GS+D++V +W
Sbjct: 29 TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88
Query: 128 SSRCVGNYTQPDKVFTMSLCG 148
S D+ F M L
Sbjct: 89 ES--------ADRTFEMDLLA 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,006,867
Number of Sequences: 62578
Number of extensions: 410091
Number of successful extensions: 1473
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 287
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)