Query psy11885
Match_columns 327
No_of_seqs 179 out of 2057
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 21:26:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mmy_A MRNA export factor; mRN 100.0 6E-40 2.1E-44 290.5 41.3 319 7-327 31-365 (368)
2 1yfq_A Cell cycle arrest prote 100.0 1.2E-40 4E-45 293.0 36.2 309 8-320 4-339 (342)
3 1vyh_C Platelet-activating fac 100.0 5.5E-41 1.9E-45 303.6 33.6 274 13-302 106-405 (410)
4 2ynn_A Coatomer subunit beta'; 100.0 1.9E-40 6.6E-45 288.1 34.9 272 13-299 11-294 (304)
5 3ow8_A WD repeat-containing pr 100.0 1.7E-40 5.8E-45 290.8 34.2 280 8-302 25-315 (321)
6 4g56_B MGC81050 protein; prote 100.0 8.9E-40 3.1E-44 290.4 34.5 278 12-304 39-339 (357)
7 4gqb_B Methylosome protein 50; 100.0 4.2E-40 1.4E-44 290.9 31.7 271 13-299 28-322 (344)
8 1got_B GT-beta; complex (GTP-b 100.0 1.9E-39 6.4E-44 286.3 35.4 275 12-301 52-336 (340)
9 2pbi_B Guanine nucleotide-bind 100.0 2.4E-39 8.3E-44 287.2 35.5 275 12-300 61-349 (354)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.3E-38 3.2E-42 276.0 33.4 289 12-304 12-331 (345)
11 3frx_A Guanine nucleotide-bind 100.0 2.7E-37 9.3E-42 270.1 36.0 271 12-300 14-309 (319)
12 3iz6_a 40S ribosomal protein R 100.0 2E-38 6.9E-43 283.9 28.5 282 12-301 63-368 (380)
13 4ery_A WD repeat-containing pr 100.0 9.2E-37 3.2E-41 265.5 37.9 273 12-296 20-298 (312)
14 1nr0_A Actin interacting prote 100.0 2.9E-37 9.9E-42 292.9 36.9 280 12-303 144-562 (611)
15 1nr0_A Actin interacting prote 100.0 8.6E-38 2.9E-42 296.5 32.0 277 12-302 187-605 (611)
16 1erj_A Transcriptional repress 100.0 1.4E-36 4.7E-41 273.2 37.7 279 14-303 63-384 (393)
17 2xzm_R RACK1; ribosome, transl 100.0 7.8E-36 2.7E-40 263.4 36.4 272 12-300 18-332 (343)
18 2hes_X YDR267CP; beta-propelle 100.0 1.4E-35 4.9E-40 260.4 33.9 283 12-302 11-322 (330)
19 2ymu_A WD-40 repeat protein; u 100.0 3E-35 1E-39 276.5 37.2 269 12-300 300-572 (577)
20 3i2n_A WD repeat-containing pr 100.0 2.4E-35 8.2E-40 260.2 32.5 274 12-297 15-342 (357)
21 4h5i_A Guanine nucleotide-exch 100.0 1.2E-34 4E-39 258.1 34.9 279 16-304 15-339 (365)
22 2ymu_A WD-40 repeat protein; u 100.0 5.2E-34 1.8E-38 268.1 40.0 292 12-323 259-561 (577)
23 2pm7_B Protein transport prote 100.0 6.2E-35 2.1E-39 252.6 30.7 238 12-303 6-280 (297)
24 1sq9_A Antiviral protein SKI8; 100.0 9.1E-35 3.1E-39 260.6 32.9 282 10-299 11-386 (397)
25 3zwl_B Eukaryotic translation 100.0 5.9E-34 2E-38 252.0 36.1 271 12-299 29-337 (369)
26 1gxr_A ESG1, transducin-like e 100.0 8.9E-34 3E-38 248.0 35.5 268 12-299 48-328 (337)
27 3dm0_A Maltose-binding peripla 100.0 3.6E-34 1.2E-38 275.5 35.4 275 11-302 378-687 (694)
28 3k26_A Polycomb protein EED; W 100.0 2E-34 6.8E-39 255.0 30.8 280 10-300 13-358 (366)
29 4aow_A Guanine nucleotide-bind 100.0 1.5E-33 5.2E-38 247.2 35.7 272 12-300 35-329 (340)
30 4e54_B DNA damage-binding prot 100.0 5.5E-35 1.9E-39 266.2 27.4 279 10-296 114-419 (435)
31 3ei3_B DNA damage-binding prot 100.0 9.8E-34 3.4E-38 253.2 33.9 279 9-296 67-371 (383)
32 1got_B GT-beta; complex (GTP-b 100.0 6.9E-34 2.3E-38 250.7 31.6 237 13-263 95-340 (340)
33 1r5m_A SIR4-interacting protei 100.0 1.2E-33 4.2E-38 254.7 33.6 272 12-299 42-416 (425)
34 3bg1_A Protein SEC13 homolog; 100.0 3.9E-35 1.3E-39 256.1 22.9 239 11-304 9-289 (316)
35 3frx_A Guanine nucleotide-bind 100.0 1.3E-33 4.5E-38 246.7 31.7 246 12-267 62-318 (319)
36 3dw8_B Serine/threonine-protei 100.0 5.1E-34 1.7E-38 259.7 30.2 280 14-299 27-438 (447)
37 2pm9_A Protein WEB1, protein t 100.0 1.2E-34 4E-39 261.3 25.7 273 16-300 13-329 (416)
38 4gqb_B Methylosome protein 50; 100.0 1.7E-33 5.7E-38 248.6 32.2 236 14-267 81-332 (344)
39 2pm9_A Protein WEB1, protein t 100.0 2.9E-34 1E-38 258.7 25.5 277 13-303 65-409 (416)
40 3odt_A Protein DOA1; ubiquitin 100.0 7.1E-32 2.4E-36 233.6 39.0 263 11-298 14-286 (313)
41 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.2E-33 2.1E-37 245.1 31.9 258 11-273 57-342 (345)
42 2ynn_A Coatomer subunit beta'; 100.0 1.1E-32 3.8E-37 239.2 32.9 241 51-304 7-255 (304)
43 1vyh_C Platelet-activating fac 100.0 3.2E-33 1.1E-37 252.7 30.0 237 12-264 147-409 (410)
44 3ow8_A WD repeat-containing pr 100.0 9.2E-33 3.1E-37 241.6 31.5 237 12-264 77-319 (321)
45 1k8k_C P40, ARP2/3 complex 41 100.0 1E-32 3.5E-37 244.8 31.5 272 13-301 6-354 (372)
46 3vl1_A 26S proteasome regulato 100.0 6.4E-33 2.2E-37 250.6 30.4 270 17-300 99-411 (420)
47 3gre_A Serine/threonine-protei 100.0 2.1E-33 7E-38 255.4 26.3 288 8-301 56-433 (437)
48 3dwl_C Actin-related protein 2 100.0 1.8E-34 6.1E-39 257.2 18.3 246 12-298 8-272 (377)
49 3mkq_A Coatomer beta'-subunit; 100.0 3.9E-32 1.3E-36 265.3 34.9 273 12-299 10-294 (814)
50 2pbi_B Guanine nucleotide-bind 100.0 2.7E-32 9.2E-37 241.9 30.0 236 14-263 105-354 (354)
51 4ggc_A P55CDC, cell division c 100.0 1.5E-31 5.1E-36 232.2 33.9 270 18-304 28-311 (318)
52 2xzm_R RACK1; ribosome, transl 100.0 8.7E-32 3E-36 237.5 32.8 250 12-268 73-342 (343)
53 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-31 4.8E-36 234.3 33.7 237 12-304 8-333 (351)
54 4g56_B MGC81050 protein; prote 100.0 2.1E-32 7.3E-37 242.8 27.7 239 13-269 92-346 (357)
55 4a11_B DNA excision repair pro 100.0 2.9E-31 1E-35 238.0 35.3 284 11-302 39-359 (408)
56 3vl1_A 26S proteasome regulato 100.0 3.6E-33 1.2E-37 252.2 22.7 271 16-301 57-358 (420)
57 3jrp_A Fusion protein of prote 100.0 7.7E-32 2.6E-36 239.5 30.5 234 12-299 8-278 (379)
58 4gga_A P55CDC, cell division c 100.0 2.8E-31 9.5E-36 240.6 34.1 268 18-304 108-391 (420)
59 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-31 4.1E-36 273.1 35.4 278 12-303 612-908 (1249)
60 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-30 4.1E-35 238.0 38.2 280 12-322 156-443 (445)
61 2j04_B YDR362CP, TAU91; beta p 100.0 9.2E-33 3.1E-37 256.2 24.1 278 14-305 206-514 (524)
62 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-31 5.2E-36 263.4 33.3 156 13-171 56-246 (902)
63 1pgu_A Actin interacting prote 100.0 9.4E-31 3.2E-35 247.2 37.1 285 12-300 157-564 (615)
64 4aez_A CDC20, WD repeat-contai 100.0 8.9E-31 3.1E-35 235.8 34.6 263 17-300 95-372 (401)
65 2hes_X YDR267CP; beta-propelle 100.0 1.9E-31 6.6E-36 234.1 29.5 243 13-266 56-328 (330)
66 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-32 3.8E-37 255.7 22.6 265 15-294 133-460 (524)
67 3k26_A Polycomb protein EED; W 100.0 1.3E-31 4.4E-36 236.9 27.5 245 14-265 68-365 (366)
68 1erj_A Transcriptional repress 100.0 6.4E-31 2.2E-35 236.3 32.2 237 16-266 124-389 (393)
69 3v7d_B Cell division control p 100.0 2.2E-30 7.5E-35 237.3 36.1 263 14-297 120-411 (464)
70 3iz6_a 40S ribosomal protein R 100.0 4.5E-32 1.5E-36 242.7 24.2 246 13-268 106-377 (380)
71 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-30 5.4E-35 236.6 33.3 265 10-301 128-407 (435)
72 3v7d_B Cell division control p 100.0 5.8E-30 2E-34 234.4 37.1 262 12-298 159-452 (464)
73 4ery_A WD repeat-containing pr 100.0 1.3E-30 4.5E-35 226.6 31.1 240 12-265 62-311 (312)
74 1gxr_A ESG1, transducin-like e 100.0 8.9E-31 3E-35 228.9 30.2 268 14-300 8-288 (337)
75 2aq5_A Coronin-1A; WD40 repeat 100.0 5E-32 1.7E-36 243.9 21.8 270 17-297 36-333 (402)
76 4gq1_A NUP37; propeller, trans 100.0 8.2E-32 2.8E-36 242.1 21.0 242 21-302 95-384 (393)
77 4aez_A CDC20, WD repeat-contai 100.0 5.9E-30 2E-34 230.4 32.3 247 11-273 130-387 (401)
78 1pgu_A Actin interacting prote 100.0 6.1E-30 2.1E-34 241.7 33.4 269 13-299 251-605 (615)
79 3sfz_A APAF-1, apoptotic pepti 100.0 8.3E-30 2.8E-34 259.6 36.1 286 12-300 654-1026(1249)
80 4gga_A P55CDC, cell division c 100.0 6.1E-30 2.1E-34 231.8 30.8 256 12-285 144-414 (420)
81 3dm0_A Maltose-binding peripla 100.0 5.2E-30 1.8E-34 246.5 31.9 249 12-265 427-692 (694)
82 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.8E-28 1.3E-32 221.4 37.9 261 14-301 117-384 (445)
83 2xyi_A Probable histone-bindin 100.0 2.7E-29 9.2E-34 228.3 30.1 232 11-298 124-400 (430)
84 3jro_A Fusion protein of prote 100.0 4.4E-30 1.5E-34 249.1 26.4 239 12-304 6-281 (753)
85 3ei3_B DNA damage-binding prot 100.0 3.4E-29 1.2E-33 223.7 29.0 240 13-266 116-382 (383)
86 2j04_A TAU60, YPL007P, hypothe 100.0 6.2E-30 2.1E-34 233.7 24.2 266 13-320 83-374 (588)
87 4e54_B DNA damage-binding prot 100.0 9.4E-30 3.2E-34 231.6 25.4 248 11-269 160-433 (435)
88 2oaj_A Protein SNI1; WD40 repe 100.0 3.2E-29 1.1E-33 246.8 30.9 245 13-298 15-297 (902)
89 3i2n_A WD repeat-containing pr 100.0 3.6E-29 1.2E-33 220.6 27.7 248 13-269 63-356 (357)
90 4aow_A Guanine nucleotide-bind 100.0 3E-28 1E-32 213.3 33.0 249 12-269 83-340 (340)
91 3vu4_A KMHSV2; beta-propeller 100.0 4.3E-29 1.5E-33 221.4 27.1 267 12-299 16-327 (355)
92 3lrv_A PRE-mRNA-splicing facto 100.0 3.4E-29 1.2E-33 220.8 25.3 257 28-302 48-327 (343)
93 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-28 4.4E-33 218.4 28.3 254 13-270 50-365 (372)
94 4a11_B DNA excision repair pro 100.0 2.7E-28 9.3E-33 218.6 30.7 279 13-307 97-403 (408)
95 3zwl_B Eukaryotic translation 100.0 5.5E-28 1.9E-32 213.6 32.0 245 12-271 71-351 (369)
96 3mkq_A Coatomer beta'-subunit; 100.0 4.4E-28 1.5E-32 236.6 33.4 269 13-297 53-376 (814)
97 4ggc_A P55CDC, cell division c 100.0 1.1E-27 3.7E-32 207.8 31.7 238 12-267 64-316 (318)
98 1sq9_A Antiviral protein SKI8; 100.0 1.6E-28 5.4E-33 220.0 26.3 239 54-304 13-318 (397)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.3E-27 7.9E-32 216.7 33.5 270 16-295 5-371 (450)
100 2aq5_A Coronin-1A; WD40 repeat 100.0 3.2E-28 1.1E-32 219.0 27.1 246 12-269 78-345 (402)
101 3gre_A Serine/threonine-protei 100.0 2.9E-29 1E-33 228.0 20.3 248 42-302 47-353 (437)
102 3dwl_C Actin-related protein 2 100.0 9.7E-29 3.3E-33 220.1 22.0 192 12-207 52-277 (377)
103 1p22_A F-BOX/WD-repeat protein 100.0 1.9E-27 6.3E-32 216.4 30.1 254 12-287 170-434 (435)
104 2j04_A TAU60, YPL007P, hypothe 100.0 9.1E-29 3.1E-33 226.0 21.2 258 14-300 14-290 (588)
105 3bws_A Protein LP49; two-domai 100.0 5.1E-27 1.7E-31 212.8 31.6 263 16-297 123-420 (433)
106 2pm7_B Protein transport prote 100.0 1.5E-27 5.2E-32 206.1 25.6 195 53-302 5-232 (297)
107 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-26 4.3E-31 200.5 31.1 231 51-301 12-248 (313)
108 1yfq_A Cell cycle arrest prote 100.0 1.9E-27 6.5E-32 208.6 26.1 229 55-300 9-274 (342)
109 1r5m_A SIR4-interacting protei 100.0 3.8E-27 1.3E-31 212.1 28.0 243 12-265 146-424 (425)
110 4h5i_A Guanine nucleotide-exch 100.0 2.5E-27 8.4E-32 210.8 25.7 197 12-266 130-343 (365)
111 1l0q_A Surface layer protein; 100.0 8.6E-26 3E-30 202.0 34.5 252 29-298 3-264 (391)
112 3dw8_B Serine/threonine-protei 100.0 3.8E-27 1.3E-31 214.3 25.8 248 55-304 26-369 (447)
113 3vu4_A KMHSV2; beta-propeller 100.0 2.8E-26 9.6E-31 203.2 30.0 241 42-301 3-264 (355)
114 3mmy_A MRNA export factor; mRN 100.0 1.8E-26 6E-31 203.8 28.2 243 44-302 25-298 (368)
115 3bg1_A Protein SEC13 homolog; 100.0 3.2E-27 1.1E-31 205.9 22.2 201 12-265 54-292 (316)
116 2w18_A PALB2, fancn, partner a 100.0 6.1E-27 2.1E-31 201.7 21.2 172 76-301 155-350 (356)
117 1l0q_A Surface layer protein; 100.0 5.8E-25 2E-29 196.6 34.0 246 16-278 32-287 (391)
118 3jrp_A Fusion protein of prote 99.9 6.2E-26 2.1E-30 201.3 24.4 203 12-266 52-287 (379)
119 3f3f_A Nucleoporin SEH1; struc 99.9 9.1E-26 3.1E-30 197.3 24.6 248 12-272 54-343 (351)
120 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.8E-25 9.4E-30 202.9 28.2 240 13-265 100-390 (450)
121 3jro_A Fusion protein of prote 99.9 4.4E-25 1.5E-29 214.0 24.1 203 12-266 50-285 (753)
122 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-24 3.4E-29 197.3 24.8 267 16-299 63-375 (415)
123 2w18_A PALB2, fancn, partner a 99.9 1.4E-24 4.7E-29 187.1 23.0 195 14-264 110-355 (356)
124 3lrv_A PRE-mRNA-splicing facto 99.9 2E-24 6.7E-29 190.3 24.1 226 16-263 77-330 (343)
125 2xyi_A Probable histone-bindin 99.9 5.6E-24 1.9E-28 193.2 27.2 195 51-299 122-344 (430)
126 3bws_A Protein LP49; two-domai 99.9 3.5E-22 1.2E-26 180.9 34.7 269 15-299 60-366 (433)
127 4gq1_A NUP37; propeller, trans 99.9 3.9E-24 1.3E-28 192.0 19.8 241 14-287 14-307 (393)
128 3vgz_A Uncharacterized protein 99.9 6.6E-21 2.3E-25 167.5 36.6 273 15-304 40-340 (353)
129 2ecf_A Dipeptidyl peptidase IV 99.9 4.3E-22 1.5E-26 192.6 31.2 273 15-299 36-401 (741)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-21 4.5E-26 176.8 30.3 235 38-289 159-409 (415)
131 2ojh_A Uncharacterized protein 99.9 5E-22 1.7E-26 169.7 24.1 251 33-300 17-294 (297)
132 1nir_A Nitrite reductase; hemo 99.9 2E-21 6.8E-26 181.2 27.9 262 22-296 144-439 (543)
133 1nir_A Nitrite reductase; hemo 99.9 8.3E-21 2.8E-25 177.1 31.8 269 18-296 181-497 (543)
134 1ri6_A Putative isomerase YBHE 99.9 7E-21 2.4E-25 166.4 27.5 264 30-298 7-297 (343)
135 3u4y_A Uncharacterized protein 99.9 9.7E-21 3.3E-25 165.3 27.7 267 21-299 3-294 (331)
136 1pby_B Quinohemoprotein amine 99.9 1.2E-20 4.1E-25 164.5 28.1 251 29-297 2-299 (337)
137 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-20 3.7E-25 181.8 29.4 265 16-298 82-421 (706)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-20 4.4E-25 181.3 24.4 270 17-299 27-377 (706)
139 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-20 4.9E-25 181.3 24.4 270 16-298 17-380 (723)
140 3o4h_A Acylamino-acid-releasin 99.9 5.3E-20 1.8E-24 173.3 25.8 269 15-298 21-302 (582)
141 2ecf_A Dipeptidyl peptidase IV 99.9 2.4E-20 8E-25 180.4 24.0 263 17-297 110-444 (741)
142 3hfq_A Uncharacterized protein 99.9 5.6E-19 1.9E-23 155.3 30.7 266 30-299 4-307 (347)
143 2oit_A Nucleoporin 214KDA; NH2 99.9 9.3E-21 3.2E-25 172.1 19.0 191 14-303 35-266 (434)
144 1ri6_A Putative isomerase YBHE 99.9 7.1E-19 2.4E-23 153.6 28.4 266 14-291 36-336 (343)
145 1pby_B Quinohemoprotein amine 99.8 1.3E-19 4.3E-24 158.0 21.8 241 17-276 35-320 (337)
146 1k32_A Tricorn protease; prote 99.8 5.5E-19 1.9E-23 177.1 28.6 274 16-298 296-628 (1045)
147 1xfd_A DIP, dipeptidyl aminope 99.8 3.6E-19 1.2E-23 171.6 25.4 270 17-297 62-429 (723)
148 1k32_A Tricorn protease; prote 99.8 1.4E-18 4.7E-23 174.3 28.5 266 12-299 200-493 (1045)
149 1jmx_B Amine dehydrogenase; ox 99.8 5.8E-18 2E-22 148.3 27.2 260 20-297 4-314 (349)
150 2ojh_A Uncharacterized protein 99.8 1.5E-18 5E-23 148.0 22.8 210 73-299 17-238 (297)
151 3u4y_A Uncharacterized protein 99.8 4.7E-17 1.6E-21 141.8 30.0 267 14-289 39-326 (331)
152 3pe7_A Oligogalacturonate lyas 99.8 2.8E-16 9.7E-21 139.9 30.8 283 21-323 41-386 (388)
153 3scy_A Hypothetical bacterial 99.8 3.5E-16 1.2E-20 138.2 30.8 261 14-286 48-360 (361)
154 1z68_A Fibroblast activation p 99.8 3E-17 1E-21 158.2 24.3 263 19-298 19-376 (719)
155 3hfq_A Uncharacterized protein 99.8 2.2E-16 7.4E-21 138.7 27.2 245 15-270 39-323 (347)
156 3scy_A Hypothetical bacterial 99.8 9.5E-16 3.2E-20 135.4 30.9 260 28-298 13-326 (361)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 5.8E-18 2E-22 153.7 16.3 153 14-168 91-279 (434)
158 3vgz_A Uncharacterized protein 99.8 7.5E-16 2.6E-20 135.1 25.9 229 56-297 39-291 (353)
159 3o4h_A Acylamino-acid-releasin 99.7 1.9E-16 6.4E-21 149.0 21.4 222 57-298 21-266 (582)
160 1jof_A Carboxy-CIS,CIS-muconat 99.7 9.9E-16 3.4E-20 135.8 22.9 266 30-298 4-330 (365)
161 1jmx_B Amine dehydrogenase; ox 99.7 2.6E-15 8.9E-20 131.3 24.2 228 17-274 44-333 (349)
162 3fvz_A Peptidyl-glycine alpha- 99.7 2.6E-14 8.7E-19 124.9 30.2 226 14-296 22-310 (329)
163 4a5s_A Dipeptidyl peptidase 4 99.7 7.1E-15 2.4E-19 142.2 29.1 272 16-297 17-382 (740)
164 1z68_A Fibroblast activation p 99.7 5.3E-16 1.8E-20 149.5 19.4 229 62-295 20-329 (719)
165 1jof_A Carboxy-CIS,CIS-muconat 99.7 7.1E-15 2.4E-19 130.2 24.9 241 16-267 40-342 (365)
166 3c5m_A Oligogalacturonate lyas 99.7 2E-15 7E-20 134.4 20.3 264 18-298 38-371 (396)
167 2dg1_A DRP35, lactonase; beta 99.7 9E-14 3.1E-18 121.2 29.0 289 16-324 6-319 (333)
168 1q7f_A NHL, brain tumor CG1071 99.7 1.8E-13 6.1E-18 116.7 30.2 236 16-324 30-283 (286)
169 2oiz_A Aromatic amine dehydrog 99.7 5.7E-14 1.9E-18 124.3 25.0 255 36-297 29-324 (361)
170 2oiz_A Aromatic amine dehydrog 99.6 1.5E-13 5E-18 121.7 26.6 255 20-290 54-360 (361)
171 3azo_A Aminopeptidase; POP fam 99.6 1.1E-13 3.6E-18 132.1 26.9 271 14-293 22-350 (662)
172 2gop_A Trilobed protease; beta 99.6 6E-13 2.1E-17 116.5 28.2 251 16-299 15-321 (347)
173 3e5z_A Putative gluconolactona 99.6 5.9E-13 2E-17 114.1 26.0 232 14-304 26-283 (296)
174 2xdw_A Prolyl endopeptidase; a 99.6 1.6E-12 5.5E-17 125.1 31.9 227 16-296 125-398 (710)
175 3dsm_A Uncharacterized protein 99.6 8.1E-13 2.8E-17 115.3 25.6 245 36-296 15-285 (328)
176 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.8E-11 6E-16 105.5 29.4 230 15-297 17-287 (314)
177 4a5s_A Dipeptidyl peptidase 4 99.5 1.8E-12 6.2E-17 125.4 25.5 265 19-298 65-436 (740)
178 1qks_A Cytochrome CD1 nitrite 99.5 1.2E-11 4.1E-16 115.4 29.5 260 27-296 166-521 (567)
179 3dsm_A Uncharacterized protein 99.5 2.3E-11 7.9E-16 106.0 27.9 249 16-285 44-319 (328)
180 1rwi_B Serine/threonine-protei 99.5 3.5E-11 1.2E-15 101.3 27.6 221 17-296 25-252 (270)
181 3pe7_A Oligogalacturonate lyas 99.5 3.9E-12 1.3E-16 113.0 22.5 248 13-264 78-380 (388)
182 3no2_A Uncharacterized protein 99.5 3.8E-11 1.3E-15 102.0 26.6 206 28-296 5-231 (276)
183 2mad_H Methylamine dehydrogena 99.5 3.4E-10 1.2E-14 100.3 32.7 265 22-296 27-337 (373)
184 3c5m_A Oligogalacturonate lyas 99.5 5E-12 1.7E-16 112.4 20.6 240 42-297 14-302 (396)
185 2bkl_A Prolyl endopeptidase; m 99.5 8.5E-12 2.9E-16 119.8 23.4 239 15-268 120-399 (695)
186 3sjl_D Methylamine dehydrogena 99.5 5E-11 1.7E-15 105.1 26.3 274 19-297 36-351 (386)
187 2z2n_A Virginiamycin B lyase; 99.5 7.9E-10 2.7E-14 94.1 32.7 261 14-295 13-283 (299)
188 1xip_A Nucleoporin NUP159; bet 99.5 1.4E-11 4.6E-16 109.1 21.5 190 59-318 39-252 (388)
189 2gop_A Trilobed protease; beta 99.4 5.6E-11 1.9E-15 103.8 25.0 231 16-277 59-340 (347)
190 3azo_A Aminopeptidase; POP fam 99.4 8.4E-12 2.9E-16 119.0 20.1 236 20-269 81-372 (662)
191 1q7f_A NHL, brain tumor CG1071 99.4 1.8E-10 6.2E-15 97.9 24.7 149 16-166 77-237 (286)
192 3g4e_A Regucalcin; six bladed 99.4 5.1E-10 1.7E-14 96.0 27.6 241 19-318 16-283 (297)
193 1yr2_A Prolyl oligopeptidase; 99.4 2.1E-10 7.1E-15 111.0 27.6 239 16-268 163-443 (741)
194 2bkl_A Prolyl endopeptidase; m 99.4 1.4E-10 4.7E-15 111.4 25.2 226 56-296 119-381 (695)
195 2ghs_A AGR_C_1268P; regucalcin 99.4 9E-09 3.1E-13 89.4 33.2 245 18-323 51-318 (326)
196 3fvz_A Peptidyl-glycine alpha- 99.3 1E-10 3.5E-15 101.9 19.2 196 16-266 91-322 (329)
197 3c75_H MADH, methylamine dehyd 99.3 1E-09 3.5E-14 98.3 24.3 252 38-297 99-390 (426)
198 2dg1_A DRP35, lactonase; beta 99.3 5E-09 1.7E-13 90.9 28.3 233 15-256 44-300 (333)
199 2qc5_A Streptogramin B lactona 99.3 2.6E-08 8.8E-13 84.7 31.3 262 14-295 18-289 (300)
200 3hrp_A Uncharacterized protein 99.3 9.2E-09 3.2E-13 92.3 29.0 233 16-295 131-397 (409)
201 3sjl_D Methylamine dehydrogena 99.3 1.8E-08 6.1E-13 88.8 29.0 252 20-288 82-384 (386)
202 1kb0_A Quinohemoprotein alcoho 99.3 8E-09 2.7E-13 98.6 28.6 282 29-322 129-568 (677)
203 2qe8_A Uncharacterized protein 99.2 7.3E-09 2.5E-13 90.7 26.3 258 16-298 17-311 (343)
204 1qks_A Cytochrome CD1 nitrite 99.2 7.4E-09 2.5E-13 96.6 27.1 192 70-273 169-380 (567)
205 1yr2_A Prolyl oligopeptidase; 99.2 4.1E-09 1.4E-13 101.9 25.3 223 59-295 164-424 (741)
206 1yiq_A Quinohemoprotein alcoho 99.2 1.1E-08 3.7E-13 97.9 27.8 282 29-323 122-571 (689)
207 3iuj_A Prolyl endopeptidase; h 99.2 1.3E-08 4.6E-13 97.5 28.4 224 14-296 127-389 (693)
208 3dr2_A Exported gluconolactona 99.2 4.2E-09 1.4E-13 90.6 22.2 223 17-299 46-298 (305)
209 2hz6_A Endoplasmic reticulum t 99.2 3.3E-11 1.1E-15 106.8 8.5 201 28-291 9-217 (369)
210 3e5z_A Putative gluconolactona 99.2 8.7E-09 3E-13 88.0 22.7 198 55-295 25-235 (296)
211 1xip_A Nucleoporin NUP159; bet 99.1 1.5E-09 5.2E-14 95.9 15.8 146 14-169 36-193 (388)
212 3no2_A Uncharacterized protein 99.1 4.1E-09 1.4E-13 89.4 17.8 175 67-298 4-185 (276)
213 1rwi_B Serine/threonine-protei 99.1 1.4E-08 4.8E-13 85.2 20.5 195 16-269 67-267 (270)
214 2xdw_A Prolyl endopeptidase; a 99.1 2.1E-08 7.3E-13 96.4 23.3 110 58-167 125-268 (710)
215 3nol_A Glutamine cyclotransfer 99.1 9E-08 3.1E-12 79.2 22.9 192 50-296 33-243 (262)
216 2mad_H Methylamine dehydrogena 99.1 8E-07 2.7E-11 78.6 30.8 236 20-273 70-357 (373)
217 2z2n_A Virginiamycin B lyase; 99.1 6.6E-07 2.3E-11 75.8 28.7 219 58-295 15-242 (299)
218 1mda_H Methylamine dehydrogena 99.1 1.3E-08 4.5E-13 89.6 18.3 259 29-297 33-333 (368)
219 2ece_A 462AA long hypothetical 99.0 1E-06 3.4E-11 78.6 29.3 228 67-296 94-399 (462)
220 3c75_H MADH, methylamine dehyd 99.0 5.9E-07 2E-11 80.5 27.8 250 20-288 122-423 (426)
221 3nok_A Glutaminyl cyclase; bet 99.0 2.6E-07 8.7E-12 76.5 21.9 192 50-296 45-253 (268)
222 3mbr_X Glutamine cyclotransfer 98.9 1.1E-06 3.7E-11 72.1 24.6 192 50-296 11-222 (243)
223 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.8E-07 9.7E-12 81.3 22.8 225 29-275 104-346 (376)
224 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.4E-06 4.6E-11 76.9 26.8 227 29-274 54-304 (376)
225 2qc5_A Streptogramin B lactona 98.9 3.3E-06 1.1E-10 71.4 28.2 219 58-295 20-247 (300)
226 2iwa_A Glutamine cyclotransfer 98.9 1.3E-06 4.5E-11 73.0 24.1 192 50-297 11-225 (266)
227 1mda_H Methylamine dehydrogena 98.9 2.9E-07 1E-11 81.0 20.0 245 20-288 69-367 (368)
228 1pjx_A Dfpase, DIISOPROPYLFLUO 98.8 1.5E-06 5.2E-11 74.2 23.4 149 16-167 71-256 (314)
229 1kb0_A Quinohemoprotein alcoho 98.8 8.4E-07 2.9E-11 84.7 22.7 140 30-172 79-297 (677)
230 1kv9_A Type II quinohemoprotei 98.8 7E-06 2.4E-10 78.2 27.8 141 30-171 119-337 (668)
231 1fwx_A Nitrous oxide reductase 98.7 1.3E-06 4.4E-11 80.5 19.5 254 19-319 90-429 (595)
232 2p4o_A Hypothetical protein; p 98.7 0.00012 4E-09 62.6 30.4 249 16-323 32-302 (306)
233 2ad6_A Methanol dehydrogenase 98.7 2.6E-05 8.7E-10 72.9 27.5 142 29-171 116-339 (571)
234 2hz6_A Endoplasmic reticulum t 98.6 4.1E-09 1.4E-13 93.3 0.9 102 67-169 8-113 (369)
235 1w6s_A Methanol dehydrogenase 98.6 5.9E-05 2E-09 70.7 29.0 141 31-172 124-347 (599)
236 1flg_A Protein (quinoprotein e 98.6 0.00013 4.5E-09 68.2 30.4 143 29-171 118-359 (582)
237 3g4e_A Regucalcin; six bladed 98.6 3.3E-05 1.1E-09 65.8 23.6 182 99-296 14-217 (297)
238 3hrp_A Uncharacterized protein 98.6 1.5E-05 5.1E-10 71.3 22.2 146 21-168 176-355 (409)
239 1yiq_A Quinohemoprotein alcoho 98.6 7.2E-06 2.5E-10 78.4 21.1 141 29-172 71-289 (689)
240 3hxj_A Pyrrolo-quinoline quino 98.5 2.4E-05 8.4E-10 67.1 20.7 204 68-297 107-313 (330)
241 1npe_A Nidogen, entactin; glyc 98.5 0.00035 1.2E-08 58.2 29.4 215 16-290 36-263 (267)
242 3iuj_A Prolyl endopeptidase; h 98.5 6.1E-06 2.1E-10 79.0 17.9 189 96-298 127-346 (693)
243 1k3i_A Galactose oxidase precu 98.5 9.6E-05 3.3E-09 70.3 25.4 112 20-131 190-326 (656)
244 2ghs_A AGR_C_1268P; regucalcin 98.4 0.00021 7.1E-09 61.7 24.3 148 16-166 90-259 (326)
245 2iwa_A Glutamine cyclotransfer 98.4 0.0001 3.5E-09 61.5 21.0 177 17-199 22-224 (266)
246 3nok_A Glutaminyl cyclase; bet 98.4 8E-05 2.7E-09 61.6 19.0 149 16-171 55-214 (268)
247 2qe8_A Uncharacterized protein 98.3 0.00013 4.3E-09 63.5 21.6 154 14-168 65-279 (343)
248 2fp8_A Strictosidine synthase; 98.3 0.00047 1.6E-08 59.2 24.9 150 17-167 20-216 (322)
249 3nol_A Glutamine cyclotransfer 98.3 0.00016 5.6E-09 59.7 20.0 174 17-198 44-242 (262)
250 3dr2_A Exported gluconolactona 98.3 6.8E-05 2.3E-09 64.0 17.9 147 15-166 85-266 (305)
251 3mbr_X Glutamine cyclotransfer 98.2 0.0012 4.2E-08 54.0 23.6 155 12-171 17-183 (243)
252 3hxj_A Pyrrolo-quinoline quino 98.2 4E-05 1.4E-09 65.7 15.4 243 20-293 24-270 (330)
253 2ece_A 462AA long hypothetical 98.2 0.00069 2.4E-08 60.4 23.1 140 25-165 93-287 (462)
254 1npe_A Nidogen, entactin; glyc 98.2 0.0015 5E-08 54.4 24.2 155 16-170 79-241 (267)
255 4a2l_A BT_4663, two-component 98.2 0.0067 2.3E-07 58.9 35.8 267 18-295 175-469 (795)
256 4a2l_A BT_4663, two-component 98.1 0.0078 2.7E-07 58.4 35.8 291 15-323 262-597 (795)
257 1kv9_A Type II quinohemoprotei 98.1 0.00061 2.1E-08 64.9 21.3 141 29-172 67-284 (668)
258 2ad6_A Methanol dehydrogenase 98.1 0.0016 5.5E-08 60.7 23.5 105 30-137 64-194 (571)
259 3v9f_A Two-component system se 98.0 0.012 4E-07 57.0 33.8 291 15-323 210-550 (781)
260 1fwx_A Nitrous oxide reductase 98.0 0.00023 7.8E-09 65.7 15.3 195 67-296 100-348 (595)
261 1w6s_A Methanol dehydrogenase 97.9 0.0035 1.2E-07 58.7 23.3 106 30-137 64-200 (599)
262 2xe4_A Oligopeptidase B; hydro 97.9 0.0048 1.6E-07 59.6 24.7 150 17-167 175-354 (751)
263 3qqz_A Putative uncharacterize 97.8 0.012 4.1E-07 48.6 24.1 207 93-318 22-250 (255)
264 3v9f_A Two-component system se 97.7 0.043 1.5E-06 53.0 33.1 270 15-300 257-560 (781)
265 1flg_A Protein (quinoprotein e 97.5 0.0049 1.7E-07 57.6 17.3 55 118-172 465-521 (582)
266 1k3i_A Galactose oxidase precu 97.5 0.017 5.9E-07 54.7 21.1 107 62-168 190-324 (656)
267 3tc9_A Hypothetical hydrolase; 97.4 0.061 2.1E-06 48.1 27.0 149 16-166 137-300 (430)
268 3tc9_A Hypothetical hydrolase; 97.4 0.076 2.6E-06 47.5 24.8 147 61-210 140-300 (430)
269 2fp8_A Strictosidine synthase; 97.3 0.036 1.2E-06 47.2 19.2 148 17-166 81-268 (322)
270 2xzh_A Clathrin heavy chain 1; 97.2 0.093 3.2E-06 44.7 27.2 204 20-273 71-297 (365)
271 3amr_A 3-phytase; beta-propell 97.1 0.11 3.7E-06 44.8 20.2 136 29-166 41-209 (355)
272 3qqz_A Putative uncharacterize 97.1 0.091 3.1E-06 43.3 21.9 151 16-167 27-204 (255)
273 3v65_B Low-density lipoprotein 97.0 0.15 5.1E-06 44.8 25.5 206 77-297 95-306 (386)
274 2xe4_A Oligopeptidase B; hydro 96.9 0.11 3.8E-06 50.0 20.4 113 99-212 175-303 (751)
275 2p9w_A MAL S 1 allergenic prot 96.9 0.16 5.4E-06 43.4 19.8 148 20-167 17-215 (334)
276 3ei3_A DNA damage-binding prot 96.9 0.43 1.5E-05 48.2 30.0 180 15-200 553-756 (1158)
277 3m0c_C LDL receptor, low-densi 96.8 0.39 1.3E-05 46.4 22.9 207 77-298 403-621 (791)
278 3v65_B Low-density lipoprotein 96.8 0.24 8.3E-06 43.4 24.2 240 17-274 78-326 (386)
279 4hw6_A Hypothetical protein, I 96.7 0.3 1E-05 43.6 26.3 205 61-269 142-376 (433)
280 1n7d_A LDL receptor, low-densi 96.7 0.025 8.7E-07 54.0 13.7 150 16-166 406-570 (699)
281 3v64_C Agrin; beta propeller, 96.7 0.28 9.5E-06 42.4 26.7 206 77-297 52-263 (349)
282 4hw6_A Hypothetical protein, I 96.6 0.34 1.2E-05 43.2 25.4 148 16-166 139-303 (433)
283 1bpo_A Protein (clathrin); cla 96.6 0.36 1.2E-05 42.8 27.9 204 20-273 70-296 (494)
284 3v64_C Agrin; beta propeller, 96.3 0.47 1.6E-05 40.9 26.1 239 16-273 34-282 (349)
285 2p9w_A MAL S 1 allergenic prot 96.3 0.47 1.6E-05 40.5 20.5 160 100-267 15-216 (334)
286 3ei3_A DNA damage-binding prot 96.1 1.4 4.6E-05 44.7 36.3 118 10-131 508-641 (1158)
287 3sov_A LRP-6, low-density lipo 95.9 0.72 2.5E-05 39.2 22.2 198 77-287 12-218 (318)
288 3pbp_A Nucleoporin NUP82; beta 95.8 0.53 1.8E-05 41.6 16.0 60 236-295 125-197 (452)
289 1xi4_A Clathrin heavy chain; a 95.7 0.66 2.3E-05 47.4 18.1 106 21-129 71-189 (1630)
290 3sre_A PON1, serum paraoxonase 95.6 0.98 3.4E-05 39.1 18.4 60 237-299 166-242 (355)
291 2p4o_A Hypothetical protein; p 95.6 0.86 2.9E-05 38.2 22.5 148 16-166 72-241 (306)
292 1ijq_A LDL receptor, low-densi 95.6 0.93 3.2E-05 38.4 26.6 152 15-167 29-195 (316)
293 3p5b_L Low density lipoprotein 95.4 1.3 4.3E-05 39.0 27.1 155 14-168 110-278 (400)
294 3p5b_L Low density lipoprotein 95.3 1.4 4.6E-05 38.8 29.4 231 29-274 84-328 (400)
295 1n7d_A LDL receptor, low-densi 95.2 0.095 3.3E-06 50.0 10.1 177 77-266 385-571 (699)
296 3s94_A LRP-6, low-density lipo 95.1 2.2 7.5E-05 40.0 30.4 154 16-169 84-245 (619)
297 3sov_A LRP-6, low-density lipo 94.8 1.6 5.6E-05 37.0 26.4 150 17-167 36-197 (318)
298 2xbg_A YCF48-like protein; pho 94.7 1.7 5.8E-05 36.9 27.9 258 14-295 34-310 (327)
299 3m0c_C LDL receptor, low-densi 94.7 3.4 0.00012 39.9 25.9 166 30-198 397-575 (791)
300 2vpj_A Kelch-like protein 12; 94.6 1.7 5.7E-05 36.1 19.2 140 28-168 15-185 (301)
301 1ijq_A LDL receptor, low-densi 94.6 1.8 6.2E-05 36.5 28.3 223 37-273 9-245 (316)
302 3sre_A PON1, serum paraoxonase 94.5 2.2 7.4E-05 36.9 22.9 81 237-318 222-308 (355)
303 3amr_A 3-phytase; beta-propell 94.2 2.5 8.5E-05 36.4 21.3 178 108-296 39-250 (355)
304 3kya_A Putative phosphatase; s 94.1 3.3 0.00011 37.5 25.3 148 17-165 140-339 (496)
305 4a0p_A LRP6, LRP-6, low-densit 93.5 5 0.00017 37.6 29.3 153 16-168 37-198 (628)
306 2be1_A Serine/threonine-protei 93.4 0.29 9.8E-06 42.1 8.2 110 29-138 11-140 (339)
307 3ii7_A Kelch-like protein 7; p 93.3 3 0.0001 34.6 20.1 140 28-168 12-179 (306)
308 2ism_A Putative oxidoreductase 92.8 4.3 0.00015 34.8 24.9 69 59-129 32-115 (352)
309 2be1_A Serine/threonine-protei 92.5 2.6 8.8E-05 36.1 12.8 105 68-172 10-135 (339)
310 2xn4_A Kelch-like protein 2; s 92.4 2.5 8.7E-05 35.0 12.8 140 28-168 109-277 (302)
311 2xbg_A YCF48-like protein; pho 92.4 4.5 0.00015 34.2 25.6 142 15-164 79-231 (327)
312 3pbp_A Nucleoporin NUP82; beta 92.3 2.6 8.9E-05 37.3 12.7 107 16-124 66-208 (452)
313 2xn4_A Kelch-like protein 2; s 91.2 5.7 0.00019 32.8 19.8 140 28-168 16-183 (302)
314 4a0p_A LRP6, LRP-6, low-densit 90.8 11 0.00036 35.4 34.7 114 15-130 122-239 (628)
315 2vpj_A Kelch-like protein 12; 90.4 6.6 0.00023 32.4 15.1 139 28-167 113-278 (301)
316 4asc_A Kelch repeat and BTB do 89.8 7.8 0.00027 32.3 13.8 105 27-132 98-225 (315)
317 3s94_A LRP-6, low-density lipo 89.6 13 0.00046 34.6 25.5 220 36-270 16-247 (619)
318 1tl2_A L10, protein (tachylect 89.4 3 0.0001 33.3 9.4 102 16-123 41-158 (236)
319 1zgk_A Kelch-like ECH-associat 88.9 7.8 0.00027 32.2 12.6 138 28-167 122-287 (308)
320 3ii7_A Kelch-like protein 7; p 87.7 11 0.00037 31.2 14.5 141 27-168 101-273 (306)
321 2uvk_A YJHT; unknown function, 86.5 14 0.00048 31.3 19.3 91 27-118 19-128 (357)
322 1tl2_A L10, protein (tachylect 84.8 1.4 4.8E-05 35.3 5.1 65 239-306 91-162 (236)
323 4a9v_A PHOX; hydrolase, beta-p 83.8 18 0.00061 33.3 12.5 61 236-296 476-549 (592)
324 2woz_A Kelch repeat and BTB do 83.0 19 0.00065 29.9 14.2 104 28-132 110-235 (318)
325 3kya_A Putative phosphatase; s 82.9 27 0.00091 31.6 26.3 105 61-166 142-277 (496)
326 4gq2_M Nucleoporin NUP120; bet 82.8 7.6 0.00026 38.4 10.5 38 99-136 237-274 (950)
327 1zgk_A Kelch-like ECH-associat 82.6 19 0.00066 29.7 20.4 103 27-131 24-149 (308)
328 3das_A Putative oxidoreductase 82.6 5 0.00017 34.4 8.2 51 238-288 34-90 (347)
329 2uvk_A YJHT; unknown function, 81.6 23 0.00079 29.9 14.1 131 38-169 168-344 (357)
330 1cru_A Protein (soluble quinop 81.3 8.1 0.00028 34.5 9.4 58 238-295 29-97 (454)
331 3a9g_A Putative uncharacterize 80.9 25 0.00087 30.0 16.9 97 16-116 29-153 (354)
332 2zwa_A Leucine carboxyl methyl 80.4 29 0.00098 32.9 13.3 103 28-130 452-579 (695)
333 3zwu_A Alkaline phosphatase PH 80.3 6.1 0.00021 36.6 8.3 60 237-296 477-549 (592)
334 2ism_A Putative oxidoreductase 79.5 10 0.00034 32.5 9.2 55 238-295 33-95 (352)
335 2g8s_A Glucose/sorbosone dehyd 77.8 8.4 0.00029 33.0 8.1 49 238-288 20-76 (353)
336 1cru_A Protein (soluble quinop 77.0 40 0.0014 30.0 20.1 32 99-130 28-59 (454)
337 4asc_A Kelch repeat and BTB do 76.1 32 0.0011 28.4 20.1 100 29-131 6-129 (315)
338 2zwa_A Leucine carboxyl methyl 73.9 47 0.0016 31.4 12.8 106 27-132 397-526 (695)
339 4fhn_B Nucleoporin NUP120; pro 67.7 4.4 0.00015 41.0 4.3 37 100-136 240-276 (1139)
340 2woz_A Kelch repeat and BTB do 67.6 51 0.0017 27.2 20.7 137 29-168 17-185 (318)
341 3das_A Putative oxidoreductase 66.7 60 0.0021 27.7 18.7 33 98-130 32-64 (347)
342 4gq2_M Nucleoporin NUP120; bet 64.0 13 0.00046 36.6 6.9 37 16-53 236-272 (950)
343 2wg3_C Hedgehog-interacting pr 62.7 16 0.00056 32.6 6.7 58 238-295 16-90 (463)
344 3f7f_A Nucleoporin NUP120; nuc 62.7 13 0.00044 35.3 6.1 36 100-137 224-259 (729)
345 3a9g_A Putative uncharacterize 60.2 79 0.0027 26.8 26.0 59 238-296 261-330 (354)
346 3s25_A Hypothetical 7-bladed b 59.3 76 0.0026 26.3 13.2 126 20-154 108-240 (302)
347 3qhy_B Beta-lactamase inhibito 58.0 76 0.0026 25.9 24.4 143 16-168 24-169 (282)
348 3sbq_A Nitrous-oxide reductase 57.9 93 0.0032 28.7 10.5 70 17-87 324-408 (638)
349 3f7f_A Nucleoporin NUP120; nuc 55.1 25 0.00086 33.3 6.7 35 17-54 223-257 (729)
350 4fhn_B Nucleoporin NUP120; pro 50.2 14 0.00049 37.3 4.5 35 238-272 240-274 (1139)
351 2g8s_A Glucose/sorbosone dehyd 44.0 1.5E+02 0.005 25.1 25.0 58 238-295 273-340 (353)
352 1xi4_A Clathrin heavy chain; a 39.4 2.5E+02 0.0086 29.4 11.2 61 105-167 73-134 (1630)
353 3qhy_B Beta-lactamase inhibito 37.3 1.7E+02 0.0057 23.8 14.7 142 16-167 63-207 (282)
354 3ott_A Two-component system se 35.7 2.8E+02 0.0097 26.0 26.2 252 57-323 21-290 (758)
355 3s25_A Hypothetical 7-bladed b 22.5 3.2E+02 0.011 22.4 23.5 85 78-168 88-177 (302)
No 1
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6e-40 Score=290.47 Aligned_cols=319 Identities=34% Similarity=0.667 Sum_probs=254.7
Q ss_pred eeecCCCCCCCeeEEEEecCC--CcEEEEEECCCcEEEEECCC-CeE--EEEecCCCceeeEEEe-CCceEEEEecCCcE
Q psy11885 7 EYSLNSPPEDGITAVKFAPNS--NQFLLASSWDCNVSLYDITN-NNL--RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTL 80 (327)
Q Consensus 7 ~~~~~~~~~~~I~~i~fs~~~--~~~l~s~~~d~~i~iwd~~~-~~~--~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i 80 (327)
.......|.+.|++++|+|++ +.+|++++.|+.|++||+.+ ++. .....|..+|.+++|+ ++.++++++.|+.|
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 344556788999999999964 58999999999999999987 443 4455799999999995 77899999999999
Q ss_pred EEEEcCCCceeeeecCCccEEEEEE--eCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCC
Q psy11885 81 KMFDFNTQTETVIGTHDQPIRAVEY--SDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGR 158 (327)
Q Consensus 81 ~vwd~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (327)
++||++++....+..|..+|.+++| +++++.|++++.|+.|++||+++++++..+..+..+.++.+.+..+++++.++
T Consensus 111 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 3mmy_A 111 KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAER 190 (368)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGG
T ss_pred EEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCC
Confidence 9999998887777789999999999 89999999999999999999999999988888888888888888999999999
Q ss_pred eEEEEECCCCccceeeecccceeeeEEeEEeeCCCc----eEEEeecCeEEEEEccCCcccccceeeeeeeeecc---CC
Q psy11885 159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQG----YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE---DG 231 (327)
Q Consensus 159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~---~~ 231 (327)
.+++||++..................++.+.+.... +++++.++.+.+|.++..... .....+..|.... ..
T Consensus 191 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 191 GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp CEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CC
T ss_pred cEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccc
Confidence 999999987654333333333334456666665544 888888888888776654321 2223334443211 11
Q ss_pred eeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCC-CCCCC
Q psy11885 232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETP-PDPIP 310 (327)
Q Consensus 232 ~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~-~~~~~ 310 (327)
..+..+|.+++|+|++++|++|+.||.|++||+.+++.+..+..|..+|++++|||||++||+++++++..... -+.-.
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~ 349 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK 349 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCc
Confidence 22334699999999999999999999999999999999999999999999999999999999999887655542 34457
Q ss_pred CCcEEEEEcccccccCC
Q psy11885 311 PNNIFIRHVTDQETKPK 327 (327)
Q Consensus 311 ~~~~~~~~~~~~~~~~~ 327 (327)
.+.|++..+.+ +-+||
T Consensus 350 ~~~i~~~~~~~-~~~p~ 365 (368)
T 3mmy_A 350 KNYIFLRNAAE-ELKPR 365 (368)
T ss_dssp CCEEEEECCTT-TTSBC
T ss_pred cceeeehhcCc-ccCcc
Confidence 78999999885 66664
No 2
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-40 Score=292.96 Aligned_cols=309 Identities=25% Similarity=0.464 Sum_probs=253.4
Q ss_pred eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCCceeeEEEe-CCc-eEEEEecCCcEE
Q psy11885 8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCFQ-DAV-HSFSGGLDCTLK 81 (327)
Q Consensus 8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~~v~~~~~~-~~~-~~~sgs~Dg~i~ 81 (327)
+.....|++.|++++|+|+ +.+|++++.|+.|++||+.+++ ......|...|.+++|+ ++. .+++|+.|+.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 3445678899999999995 5789999999999999998876 56667899999999995 778 899999999999
Q ss_pred EEEc-CCCceeeeec--CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC---------CceeeeeeCCCcEEEEecCCC
Q psy11885 82 MFDF-NTQTETVIGT--HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS---------SRCVGNYTQPDKVFTMSLCGE 149 (327)
Q Consensus 82 vwd~-~~~~~~~~~~--h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~---------~~~~~~~~~~~~~~~~~~~~~ 149 (327)
+||+ +++....+.. |...|.+++|++ ++.+++++.|+.|++||+++ ++++..+.....+.++.++++
T Consensus 83 ~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 83 KVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred EEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence 9999 8887777788 999999999999 99999999999999999988 777777776677888888888
Q ss_pred eEEEEeCCCeEEEEECCC-CccceeeecccceeeeEEeEEee-CCCceEEEeecCeEEEEEccCC--cccccceeeeeee
Q psy11885 150 KFVVGTAGRKVCIWDLRN-MGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTG--PEMQKMKYAFKCH 225 (327)
Q Consensus 150 ~~~~~~~d~~v~iwD~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~h 225 (327)
.+++++.++.|++||+++ .................++.++| ++..+++++.++.+.+|.++.. .........+..|
T Consensus 162 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 899999999999999997 54322223333344568889999 8888999999999888777664 1112333444555
Q ss_pred eeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC-CcceEEEEECCCCCEEEEEEcccc-ccC
Q psy11885 226 RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY-DTGITSLCFSYDGNVLAIACSYNY-ELE 303 (327)
Q Consensus 226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~-~~~v~~l~fspdg~~la~~~~~~~-~~~ 303 (327)
.....+..+..+|.+++|+|++++|++|+.||.|++||+.+++.+..+..| ..+|++++ |+|++||+++.++. ...
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence 432222233347899999999999999999999999999999999999988 88999999 99999999999988 555
Q ss_pred CC---CCCCCCCcEEEEEcc
Q psy11885 304 TP---PDPIPPNNIFIRHVT 320 (327)
Q Consensus 304 ~~---~~~~~~~~~~~~~~~ 320 (327)
.. +.+.+++.|||+++.
T Consensus 320 ~~~~~~~~~~~~~i~~~~~~ 339 (342)
T 1yfq_A 320 AAIDQTIELNASSIYIIFDY 339 (342)
T ss_dssp SSSCTTSCCCCCEEEEEETC
T ss_pred ccccccCCCCCceEEEeccc
Confidence 54 567889999999933
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.5e-41 Score=303.60 Aligned_cols=274 Identities=20% Similarity=0.285 Sum_probs=222.7
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
.|.+.|++++|+|+ +.+|++|+.|++|++||+.+++. ....+|.+.|.+++|+ ++..+++|+.|++|++||+++...
T Consensus 106 gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~ 184 (410)
T 1vyh_C 106 GHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184 (410)
T ss_dssp CCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred ccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 47789999999995 57999999999999999999885 4455799999999995 778999999999999999987765
Q ss_pred -eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-E--EEEecCCCeEEEEeCCCeEEEEECC
Q psy11885 91 -TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-V--FTMSLCGEKFVVGTAGRKVCIWDLR 166 (327)
Q Consensus 91 -~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~v~iwD~~ 166 (327)
..+.+|...|.+++|+|+++.|++|+.|++|++||+++++++..+..+.. + ..+.+++..+++++.|++|++||++
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 35678999999999999999999999999999999999999888875432 3 4455678899999999999999998
Q ss_pred CCccceeeecccceeeeEEeEEeeC--------------------CCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885 167 NMGYIMQRRESSLKFQTRCIKCFPN--------------------KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR 226 (327)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~ 226 (327)
+.+....... ......++.+.|+ +..+++++.++.+.+|....+.. ...+..|.
T Consensus 265 ~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~----~~~~~~h~ 338 (410)
T 1vyh_C 265 TKECKAELRE--HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC----LMTLVGHD 338 (410)
T ss_dssp TCCEEEEECC--CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE----EEEEECCS
T ss_pred CCceeeEecC--CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce----EEEEECCC
Confidence 7654322222 2233567777775 34567777788877755543321 22223332
Q ss_pred eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccccc
Q psy11885 227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYEL 302 (327)
Q Consensus 227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~ 302 (327)
.+|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...|++++|+|++.+||+|+.++...
T Consensus 339 ---------~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~ 405 (410)
T 1vyh_C 339 ---------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405 (410)
T ss_dssp ---------SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred ---------CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 2588999999999999999999999999999998889999999999999999999999998765443
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-40 Score=288.13 Aligned_cols=272 Identities=17% Similarity=0.239 Sum_probs=213.0
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
.|.+.|++++|+|+ +.+|++++.|++|++||+++++.. ....|..+|.+++|+ ++..+++|+.|++|++||++++..
T Consensus 11 ~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 11 NRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp EECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence 46789999999995 589999999999999999998854 445688999999995 788999999999999999998765
Q ss_pred -eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeeeeeCC-CcEEEE--ec-CCCeEEEEeCCCeEEEEE
Q psy11885 91 -TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQP-DKVFTM--SL-CGEKFVVGTAGRKVCIWD 164 (327)
Q Consensus 91 -~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~~-~~~~~~--~~-~~~~~~~~~~d~~v~iwD 164 (327)
..+..|...|.+++|+|++++|++|+.|++|++||++++. +...+..+ ..+.++ ++ ++..+++++.|++|++||
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd 169 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 4577899999999999999999999999999999998874 44445443 334444 44 356899999999999999
Q ss_pred CCCCccceeeecccceeeeEEeEEee--CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885 165 LRNMGYIMQRRESSLKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS 242 (327)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 242 (327)
+++.......... .......+.+.+ ++..+++++.++.+.+|...... ....+..|. .+|.+++
T Consensus 170 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----~~~~~~~h~---------~~v~~~~ 235 (304)
T 2ynn_A 170 LGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----CVATLEGHM---------SNVSFAV 235 (304)
T ss_dssp TTCSSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE----EEEEEECCS---------SCEEEEE
T ss_pred CCCCCccceeccC-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc----cceeeCCCC---------CCEEEEE
Confidence 9876543222111 111234556665 44567788888888876554332 222233332 2588999
Q ss_pred EecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC--EEEEEEccc
Q psy11885 243 FHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN--VLAIACSYN 299 (327)
Q Consensus 243 ~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~--~la~~~~~~ 299 (327)
|+|++++|++|+.||+|++||..+++.+..+..+...+++++|+|+|+ +||+|+.++
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g 294 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc
Confidence 999999999999999999999999999999988888999999999986 588775443
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=290.79 Aligned_cols=280 Identities=15% Similarity=0.196 Sum_probs=226.1
Q ss_pred eecCCCCCCCeeEEEEecC---CCcEEEEEECCCcEEEEECCCCeEE---EEecCCCceeeEEEe-CCceEEEEecCCcE
Q psy11885 8 YSLNSPPEDGITAVKFAPN---SNQFLLASSWDCNVSLYDITNNNLR---LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTL 80 (327)
Q Consensus 8 ~~~~~~~~~~I~~i~fs~~---~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i 80 (327)
+.....|++.|++++|+|+ ++.+|++|+.|++|+|||+..++.. ...+|...|.+++|+ ++..+++++.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3445679999999999984 2468999999999999999887643 244799999999995 77889999999999
Q ss_pred EEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC---cEEEEecCCCeEEEEeC
Q psy11885 81 KMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFVVGTA 156 (327)
Q Consensus 81 ~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 156 (327)
++||++++.. ..+..|...+.+++|+|++++|++|+.|++|++||+++++....+..+. ..++++++++.+++++.
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 9999988765 3466788889999999999999999999999999999988877766533 23556778899999999
Q ss_pred CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885 157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236 (327)
Q Consensus 157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 236 (327)
|+.|++||+++.+.+..... ......+++++|+++.+++++.++.+.+|....... ...+..|. .
T Consensus 185 dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~---------~ 249 (321)
T 3ow8_A 185 DGIINIFDIATGKLLHTLEG--HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL----AGTLSGHA---------S 249 (321)
T ss_dssp TSCEEEEETTTTEEEEEECC--CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE----EEEECCCS---------S
T ss_pred CCeEEEEECCCCcEEEEEcc--cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce----eEEEcCCC---------C
Confidence 99999999998764432222 223457888999988888999888888865543321 12223332 2
Q ss_pred EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccccc
Q psy11885 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYEL 302 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~ 302 (327)
+|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|+|+|++|++++.++...
T Consensus 250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~ 315 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIH 315 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 588999999999999999999999999999999999999999999999999999999998665443
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.9e-40 Score=290.36 Aligned_cols=278 Identities=13% Similarity=0.161 Sum_probs=207.5
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEEC------CCcEEEEECCCCeE-----EEEecCCCceeeEEEeCCceEEEEecCCcE
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSW------DCNVSLYDITNNNL-----RLKYAHSDPVLDCCFQDAVHSFSGGLDCTL 80 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~------d~~i~iwd~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i 80 (327)
..|++.|++++|+|+ +++|+++|. |+.|++|+..++.. .....|...|.+++|++...+++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred ccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 347889999999996 589999997 77899999877653 233468889999999877788899999999
Q ss_pred EEEEcCCCcee-----eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEE--ecCCC-eE
Q psy11885 81 KMFDFNTQTET-----VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTM--SLCGE-KF 151 (327)
Q Consensus 81 ~vwd~~~~~~~-----~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~--~~~~~-~~ 151 (327)
++||+.+++.. ...+|+..|.+++|+|++++|++|+.|++|++||+++++++..+..+ ..+.++ ++.++ .+
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 99999876532 23479999999999999999999999999999999999998887754 344444 44554 68
Q ss_pred EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC
Q psy11885 152 VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED 230 (327)
Q Consensus 152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~ 230 (327)
++++.|++|++||+++.+...............+++++|+.. .+++++.++.+.+|...... ....+..|.
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~----~~~~~~~~~---- 269 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD----SAQTSAVHS---- 269 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG----GCEEECCCS----
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc----EeEEEeccc----
Confidence 899999999999999876543333233333457788888754 45567777887775544322 122222222
Q ss_pred CeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECC-CCCEEEEEEccccccCC
Q psy11885 231 GIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY-DGNVLAIACSYNYELET 304 (327)
Q Consensus 231 ~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp-dg~~la~~~~~~~~~~~ 304 (327)
.+|++++|+|++ ++||+|+.|++|+|||+.+++.+..+ +|...|++|+||| |+++||+++.++..+.+
T Consensus 270 -----~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 270 -----QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHH 339 (357)
T ss_dssp -----SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred -----eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence 258999999987 57899999999999999998776554 7889999999999 89999999865544443
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.2e-40 Score=290.88 Aligned_cols=271 Identities=13% Similarity=0.144 Sum_probs=202.4
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC------------CeEEEEecCCCceeeEEEeCCceEEEEecCCcE
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN------------NNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTL 80 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i 80 (327)
.++..|++++|+|+ +++|++++ |+++++||... +.......|..+|.+++|++...+++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred cccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 35678999999996 57787777 88888887321 112223346678999999877899999999999
Q ss_pred EEEEcCCCcee-----eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEE--EecCCC-eE
Q psy11885 81 KMFDFNTQTET-----VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFT--MSLCGE-KF 151 (327)
Q Consensus 81 ~vwd~~~~~~~-----~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~--~~~~~~-~~ 151 (327)
++||+++++.. ...+|+..|++++|+|++++|++|+.|++|++||+++++++..+..+ ..+.+ +++.+. .+
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 99999887532 24579999999999999999999999999999999999999888754 34444 445553 68
Q ss_pred EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC
Q psy11885 152 VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED 230 (327)
Q Consensus 152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~ 230 (327)
++++.|++|++||+++.+...............+++++|.+. .+++++.++.+.+|...... ....+..|.
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~----~~~~~~~h~---- 257 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS----CVLSSAVHS---- 257 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC------CCEEEECCS----
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc----EEEEEcCCC----
Confidence 899999999999999876543332222223356778888654 45667778887775544332 222333343
Q ss_pred CeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCE-EEEEEccc
Q psy11885 231 GIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNV-LAIACSYN 299 (327)
Q Consensus 231 ~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~-la~~~~~~ 299 (327)
.+|++++|+|++ ++||+||.|++|+|||+.+++. ..+.+|...|++|+|||+|+. ||+++.++
T Consensus 258 -----~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 258 -----QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp -----SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred -----CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 258999999998 5799999999999999988765 456789999999999999975 45555443
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.9e-39 Score=286.33 Aligned_cols=275 Identities=20% Similarity=0.320 Sum_probs=221.8
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|+ +++|++++.|++|++||..+++. .....|...|.+++|+ ++..+++|+.|+.|++|++.+..
T Consensus 52 ~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 52 RGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred cCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 457889999999995 58999999999999999988874 4445688899999995 78899999999999999998653
Q ss_pred e-----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEE
Q psy11885 90 E-----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVC 161 (327)
Q Consensus 90 ~-----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~ 161 (327)
. ..+.+|...|.++.|++++ .+++++.|++|++||+++++++..+..+. .+ +.+++++..+++++.|++|+
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 1 3467899999999999876 48999999999999999999888876533 34 44566778899999999999
Q ss_pred EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885 162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI 241 (327)
Q Consensus 162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 241 (327)
+||+++........ .......+++++|++..+++++.++.+.+|.+...... ..+. |. .+...|.++
T Consensus 210 ~wd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~----~~~~-~~------~~~~~v~~~ 276 (340)
T 1got_B 210 LWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL----MTYS-HD------NIICGITSV 276 (340)
T ss_dssp EEETTTCSEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE----EEEC-CT------TCCSCEEEE
T ss_pred EEECCCCeeEEEEc--CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE----EEEc-cC------CcccceEEE
Confidence 99999875432222 12234578899999999999999999888655433211 1111 10 011247899
Q ss_pred EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE 301 (327)
Q Consensus 242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~ 301 (327)
+|+|++++|++|+.|+.|++||..+++.+..+.+|..+|++++|+|||++||+|+.++..
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 999999999999999999999999999888999999999999999999999999866543
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.4e-39 Score=287.22 Aligned_cols=275 Identities=17% Similarity=0.324 Sum_probs=221.4
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|+ +.+|++||.|++|++||..+++. .....|...|.+++|+ ++..+++|+.|+.+++|++....
T Consensus 61 ~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp ECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred cCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 457889999999996 57999999999999999988774 4445678889999994 78899999999999999986431
Q ss_pred -------eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEE--EEec--CCCeEEEEeCC
Q psy11885 90 -------ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVF--TMSL--CGEKFVVGTAG 157 (327)
Q Consensus 90 -------~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~--~~~~--~~~~~~~~~~d 157 (327)
...+..|...|.+++|++++..|++++.|++|++||+++++++..+..+. .+. .+.+ .++.+++++.|
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D 219 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence 23466799999999999999999999999999999999999988887543 343 3444 35789999999
Q ss_pred CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885 158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP 237 (327)
Q Consensus 158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 237 (327)
++|++||+++.+.+.... .......+++++|+++.+++++.++.+.+|........ ..+..+ .+...
T Consensus 220 g~v~~wd~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~----~~~~~~-------~~~~~ 286 (354)
T 2pbi_B 220 KKAMVWDMRSGQCVQAFE--THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV----AIYSKE-------SIIFG 286 (354)
T ss_dssp SCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE----EEECCT-------TCCSC
T ss_pred CeEEEEECCCCcEEEEec--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE----EEEcCC-------Ccccc
Confidence 999999999876433222 22234678899999999999999998888554432211 111100 01124
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~ 300 (327)
+.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|++++|||||++||+|+.++.
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 778999999999999999999999999999988889999999999999999999999986654
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-38 Score=276.04 Aligned_cols=289 Identities=13% Similarity=0.134 Sum_probs=212.6
Q ss_pred CCCCC-CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE--E--EecCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885 12 SPPED-GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR--L--KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF 85 (327)
Q Consensus 12 ~~~~~-~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~--~--~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~ 85 (327)
..|.+ .|.+++|+|+ +.+||+|+.|++|+|||+.+++.. . ..+|...|.+++|+ ++.++++|+.|++|++||+
T Consensus 12 ~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp CCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred cCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 34444 8999999995 579999999999999999887632 1 23699999999995 7889999999999999999
Q ss_pred CCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc---eeeeeeCC-Cc--EEEEecCCCeEEEEeC
Q psy11885 86 NTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR---CVGNYTQP-DK--VFTMSLCGEKFVVGTA 156 (327)
Q Consensus 86 ~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~---~~~~~~~~-~~--~~~~~~~~~~~~~~~~ 156 (327)
+.+.. ..+.+|..+|.+++|+|++++|++|+.|++|++||+++++ ++..+..+ .. .+.+++++..+++++.
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~ 170 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY 170 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET
T ss_pred cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC
Confidence 87643 3467899999999999999999999999999999998764 33444332 22 3456677889999999
Q ss_pred CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee-----eeee-eeeccC
Q psy11885 157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY-----AFKC-HRIKED 230 (327)
Q Consensus 157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~-h~~~~~ 230 (327)
|++|++||+++.+...............+++++|+++.+++++.++.+.+|............. ...+ .....
T Consensus 171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 249 (345)
T 3fm0_A 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG- 249 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS-
T ss_pred CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC-
Confidence 9999999998654322212222333467889999999999999999988865422211111100 0000 00000
Q ss_pred CeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee---------eeecCcCCcceEEEEECCCCC-EEEEEEcccc
Q psy11885 231 GIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR---------LCQFHRYDTGITSLCFSYDGN-VLAIACSYNY 300 (327)
Q Consensus 231 ~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~---------~~~~~~~~~~v~~l~fspdg~-~la~~~~~~~ 300 (327)
.|...|.+++|+|++..||+++.|+.|++|+...... .....+|...|++|+|+|++. +||+|+.++.
T Consensus 250 --~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 250 --FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp --SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred --CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 0122588999999999999999999999999765421 122357888999999999984 8988876654
Q ss_pred ccCC
Q psy11885 301 ELET 304 (327)
Q Consensus 301 ~~~~ 304 (327)
...+
T Consensus 328 v~~W 331 (345)
T 3fm0_A 328 VAFW 331 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.7e-37 Score=270.12 Aligned_cols=271 Identities=17% Similarity=0.254 Sum_probs=208.6
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-----e-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEE
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-----N-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFD 84 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-----~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd 84 (327)
..|.+.|++++|+|+++.+|++|+.|++|++||+... . +....+|...|.+++|+ ++.+++||+.|++|++||
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 5688999999999976689999999999999998642 1 23445799999999995 788999999999999999
Q ss_pred cCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEE--ecC------CCeEEEE
Q psy11885 85 FNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTM--SLC------GEKFVVG 154 (327)
Q Consensus 85 ~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~--~~~------~~~~~~~ 154 (327)
+++++. ..+.+|..+|.+++|+|+++.|++|+.|++|++||++. +++..+..+ ..+..+ .+. +..++++
T Consensus 94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred CCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 998765 45778999999999999999999999999999999964 455555433 334333 332 3379999
Q ss_pred eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeee
Q psy11885 155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEK 234 (327)
Q Consensus 155 ~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 234 (327)
+.|+.|++||+++.+...... .+.....+++++|++..+++++.++.+.+|....... ...+..+
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~--------- 237 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA----MYTLSAQ--------- 237 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEEC--CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE----EEEEECC---------
T ss_pred eCCCEEEEEECCcchhheeec--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEecCC---------
Confidence 999999999998765332211 2233457888999998889999898888865544321 1111111
Q ss_pred EEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC--------cCCcceEEEEECCCCCEEEEEEcccc
Q psy11885 235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH--------RYDTGITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 235 ~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~--------~~~~~v~~l~fspdg~~la~~~~~~~ 300 (327)
.+|.+++|+|++.+|++++. +.+++|++.....+..+. .+...+.+++|||||++||+|+.++.
T Consensus 238 -~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 238 -DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309 (319)
T ss_dssp -SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred -CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCce
Confidence 15889999999999998875 459999988776655442 24557899999999999999985543
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-38 Score=283.95 Aligned_cols=282 Identities=19% Similarity=0.373 Sum_probs=216.9
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|+ +.+|++|+.|++|+|||..+++. .....|...|.+++|+ ++..+++|+.|+.+++||+.+..
T Consensus 63 ~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp CCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred cccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence 458899999999995 57999999999999999998885 4455788999999995 78899999999999999987532
Q ss_pred --------eeeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeee------CCCcEEEEec---CCCeE
Q psy11885 90 --------ETVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYT------QPDKVFTMSL---CGEKF 151 (327)
Q Consensus 90 --------~~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~------~~~~~~~~~~---~~~~~ 151 (327)
...+.+|...|.++.|.|+ +..|++|+.|++|++||+++++++..+. +...+.++.+ +++.+
T Consensus 142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 221 (380)
T 3iz6_a 142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF 221 (380)
T ss_dssp SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEE
T ss_pred cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEE
Confidence 1346789999999999986 4579999999999999999998876652 1233555443 56789
Q ss_pred EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCC
Q psy11885 152 VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG 231 (327)
Q Consensus 152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~ 231 (327)
++|+.|++|++||++......... ..+.....+++++|++..+++++.++.+.+|....+.... .+..+.....
T Consensus 222 ~sgs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~----~~~~~~~~~~- 295 (380)
T 3iz6_a 222 ISGSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ----VYNREPDRND- 295 (380)
T ss_dssp EEEETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE----EECCCCSSSC-
T ss_pred EEEECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE----Eecccccccc-
Confidence 999999999999998543222111 1122345788999999999999999998886655433211 1111111000
Q ss_pred eeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec----CcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885 232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF----HRYDTGITSLCFSYDGNVLAIACSYNYE 301 (327)
Q Consensus 232 ~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~----~~~~~~v~~l~fspdg~~la~~~~~~~~ 301 (327)
.+...+.+++|+|++++|++|+.||.|++||...++.+..+ .+|...|++++|||||++||+|+.++..
T Consensus 296 -~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 296 -NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp -CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred -cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence 11124789999999999999999999999999888777665 5788899999999999999999755443
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.2e-37 Score=265.45 Aligned_cols=273 Identities=19% Similarity=0.268 Sum_probs=217.4
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|+ +++|++++.|+.|++|+..+++.. ....|...|.+++|+ ++..+++|+.|+.|++||++++.
T Consensus 20 ~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 20 AGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98 (312)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence 457889999999995 579999999999999999888754 445799999999995 78899999999999999998876
Q ss_pred e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEEEC
Q psy11885 90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIWDL 165 (327)
Q Consensus 90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iwD~ 165 (327)
. ..+..|...|.+++|+|+++.|++|+.|++|++||+++++++..+..+. .+ +.+++++..+++++.|+.|++||+
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 5 4567899999999999999999999999999999999998888776533 33 455667889999999999999999
Q ss_pred CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885 166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245 (327)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp 245 (327)
++.+.+.... .........+++.|+++.+++++.++.+.+|.+..... ...+..|..... .+......+
T Consensus 179 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~------~~~~~~~~~ 247 (312)
T 4ery_A 179 ASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEKY------CIFANFSVT 247 (312)
T ss_dssp TTCCEEEEEC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE----EEEECSSCCSSS------CCCEEEECS
T ss_pred CCCceeeEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE----EEEEEecCCceE------EEEEEEEeC
Confidence 9876433221 11222346778889988888888888888765544321 112222221100 122222346
Q ss_pred CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885 246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 246 d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~ 296 (327)
++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++||+++
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 788999999999999999999999999999999999999999999999987
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-37 Score=292.90 Aligned_cols=280 Identities=15% Similarity=0.194 Sum_probs=212.7
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|++...|++++.|++|++||..+++.. ...+|...|.+++|+ ++.+++||+.|++|++||+.++.
T Consensus 144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc
Confidence 4577899999999975557999999999999999888754 445799999999995 78899999999999999998776
Q ss_pred ee-ee-e------cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee-------------------------
Q psy11885 90 ET-VI-G------THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT------------------------- 136 (327)
Q Consensus 90 ~~-~~-~------~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~------------------------- 136 (327)
.. .+ . +|...|.+++|+|++++|++++.|++|++||+++++++..+.
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 53 33 2 699999999999999999999999999999999887654432
Q ss_pred ------------------CC-CcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeec-------------------
Q psy11885 137 ------------------QP-DKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRE------------------- 176 (327)
Q Consensus 137 ------------------~~-~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~------------------- 176 (327)
.+ ..+ ++++++++.+++++.|++|++||+++.........
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s 383 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 383 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEE
Confidence 11 123 34566788999999999999999976432110000
Q ss_pred -------------------------------------c------------------------cceeeeEEeEEeeCCCce
Q psy11885 177 -------------------------------------S------------------------SLKFQTRCIKCFPNKQGY 195 (327)
Q Consensus 177 -------------------------------------~------------------------~~~~~~~~~~~~~~~~~~ 195 (327)
. .......+++++|+++.+
T Consensus 384 ~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~l 463 (611)
T 1nr0_A 384 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFV 463 (611)
T ss_dssp EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEE
T ss_pred EEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEE
Confidence 0 000113467778888888
Q ss_pred EEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC-ceeeee--
Q psy11885 196 VLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN-KKRLCQ-- 272 (327)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~-~~~~~~-- 272 (327)
++++.++.+.+|........ ... . ..| ...|++++|+||+++||+++.|++|++||+.+ ++.+..
T Consensus 464 asgs~D~~v~lwd~~~~~~~-~~~-~-~~h---------~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~ 531 (611)
T 1nr0_A 464 AVGGQDSKVHVYKLSGASVS-EVK-T-IVH---------PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS 531 (611)
T ss_dssp EEEETTSEEEEEEEETTEEE-EEE-E-EEC---------SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred EEeCCCCeEEEEEccCCcee-eee-c-cCC---------CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee
Confidence 88888888877665432110 000 1 122 22589999999999999999999999999987 555443
Q ss_pred cCcCCcceEEEEECCCCCEEEEEEccccccC
Q psy11885 273 FHRYDTGITSLCFSYDGNVLAIACSYNYELE 303 (327)
Q Consensus 273 ~~~~~~~v~~l~fspdg~~la~~~~~~~~~~ 303 (327)
...|...|++++|||||++||+|+.+.....
T Consensus 532 ~~~H~~~V~~v~fspdg~~lasgs~D~~v~l 562 (611)
T 1nr0_A 532 WTFHTAKVACVSWSPDNVRLATGSLDNSVIV 562 (611)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeecccceeEEEECCCCCEEEEEECCCcEEE
Confidence 2348889999999999999999987654433
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.6e-38 Score=296.52 Aligned_cols=277 Identities=15% Similarity=0.186 Sum_probs=212.0
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--------cCCCceeeEEEe-CCceEEEEecCCcEEE
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--------AHSDPVLDCCFQ-DAVHSFSGGLDCTLKM 82 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~h~~~v~~~~~~-~~~~~~sgs~Dg~i~v 82 (327)
..|.+.|++++|+|+ +++|++++.|++|++||+.+++....+ +|.+.|.+++|+ ++.+++|++.|++|++
T Consensus 187 ~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~l 265 (611)
T 1nr0_A 187 GEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 265 (611)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 457889999999995 579999999999999999888754433 699999999995 7889999999999999
Q ss_pred EEcCCCcee--------------------------------------------eeecCCccEEEEEEeCCCCEEEEEECC
Q psy11885 83 FDFNTQTET--------------------------------------------VIGTHDQPIRAVEYSDEVNCILTGSWD 118 (327)
Q Consensus 83 wd~~~~~~~--------------------------------------------~~~~h~~~V~~l~~~~~~~~l~sgs~d 118 (327)
||+++++.. .+.+|...|.+++|+|++++|++++.|
T Consensus 266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D 345 (611)
T 1nr0_A 266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE 345 (611)
T ss_dssp EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 999865321 234688999999999999999999999
Q ss_pred CeEEEEeCCCCceeeeee--------------------------------------------------------------
Q psy11885 119 TSVKMWDPRSSRCVGNYT-------------------------------------------------------------- 136 (327)
Q Consensus 119 ~~i~lwdl~~~~~~~~~~-------------------------------------------------------------- 136 (327)
++|++||++++++...+.
T Consensus 346 ~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 425 (611)
T 1nr0_A 346 GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI 425 (611)
T ss_dssp SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSC
T ss_pred CcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcE
Confidence 999999998765432210
Q ss_pred -----------------------CCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC
Q psy11885 137 -----------------------QPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ 193 (327)
Q Consensus 137 -----------------------~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (327)
......++++++..+++|+.|++|++||+++....... ...+.....+++++|+++
T Consensus 426 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~-~~~h~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 426 AVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK-TIVHPAEITSVAFSNNGA 504 (611)
T ss_dssp EEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE-EEECSSCEEEEEECTTSS
T ss_pred EEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeee-ccCCCCceEEEEECCCCC
Confidence 00012345677889999999999999999764321111 112233467899999999
Q ss_pred ceEEEeecCeEEEEEccCCccccccee-eeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce-ee-
Q psy11885 194 GYVLSSIEGRAAVEYLDTGPEMQKMKY-AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK-RL- 270 (327)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~-~~- 270 (327)
.+++++.++.+.+|........ ... ....| ...|++++|+||+++||+||.|++|+|||+.++. .+
T Consensus 505 ~las~s~d~~v~~w~~~~~~~~--~~~~~~~~H---------~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~ 573 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVANNFEL--AHTNSWTFH---------TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573 (611)
T ss_dssp EEEEEETTSCEEEEEGGGTTEE--SCCCCCCCC---------SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred EEEEEcCCCCEEEEEcCCCCce--eeeeeeeec---------ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccc
Confidence 9999999998888665431111 110 11113 2368999999999999999999999999998765 33
Q ss_pred eecCcC-CcceEEEEECCCCCEEEEEEcccccc
Q psy11885 271 CQFHRY-DTGITSLCFSYDGNVLAIACSYNYEL 302 (327)
Q Consensus 271 ~~~~~~-~~~v~~l~fspdg~~la~~~~~~~~~ 302 (327)
..+.+| ...|++++|+||++ ||+++.++...
T Consensus 574 ~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~ 605 (611)
T 1nr0_A 574 IIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIK 605 (611)
T ss_dssp EETTSSTTSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred hhhccCcccCeeEEEEcCCCE-EEEecCCCCEE
Confidence 456678 78899999999998 99887665443
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-36 Score=273.23 Aligned_cols=279 Identities=19% Similarity=0.288 Sum_probs=216.2
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCC------------------CceeeEEEe-CCceEEE
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHS------------------DPVLDCCFQ-DAVHSFS 73 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~------------------~~v~~~~~~-~~~~~~s 73 (327)
|.+.|++++|+|+ +++|++|+ |+++++|++.+++..... .|. ..|.+++|+ ++.++++
T Consensus 63 h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 63 HTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 7789999999996 57888866 789999999988754333 221 238899995 7889999
Q ss_pred EecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEE--EEec-CCC
Q psy11885 74 GGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVF--TMSL-CGE 149 (327)
Q Consensus 74 gs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~--~~~~-~~~ 149 (327)
|+.|++|++||+++++. ..+.+|...|.+++|+|+++.|++++.|++|++||++++++...+.....+. .+++ ++.
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCC
Confidence 99999999999988765 3567899999999999999999999999999999999999887776655544 4455 578
Q ss_pred eEEEEeCCCeEEEEECCCCccceeeec-----ccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc-------
Q psy11885 150 KFVVGTAGRKVCIWDLRNMGYIMQRRE-----SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK------- 217 (327)
Q Consensus 150 ~~~~~~~d~~v~iwD~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------- 217 (327)
.+++++.|+.|++||+++...+..... ........++++.|++..+++++.++.+.+|.+........
T Consensus 221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~ 300 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300 (393)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence 899999999999999987654322211 11223457888999988889999899888866543221100
Q ss_pred -ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECC------CCC
Q psy11885 218 -MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY------DGN 290 (327)
Q Consensus 218 -~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp------dg~ 290 (327)
....+..| ...|.+++|+|++++|++|+.|++|++||..+++.+..+.+|...|.+++|+| +++
T Consensus 301 ~~~~~~~~h---------~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~ 371 (393)
T 1erj_A 301 TCEVTYIGH---------KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 371 (393)
T ss_dssp CEEEEEECC---------SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCE
T ss_pred cceEEEecc---------cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCC
Confidence 01111122 22588999999999999999999999999999999999999999999999986 789
Q ss_pred EEEEEEccccccC
Q psy11885 291 VLAIACSYNYELE 303 (327)
Q Consensus 291 ~la~~~~~~~~~~ 303 (327)
+||+|+.++....
T Consensus 372 ~l~sgs~Dg~i~i 384 (393)
T 1erj_A 372 VFATGSGDCKARI 384 (393)
T ss_dssp EEEEEETTSEEEE
T ss_pred EEEEECCCCcEEE
Confidence 9999986654433
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.8e-36 Score=263.41 Aligned_cols=272 Identities=16% Similarity=0.182 Sum_probs=200.8
Q ss_pred CCCCCCeeEEEE-----ecCCCcEEEEEECCCcEEEEECCCC-------e-EEEEecCCCceeeEEEe-CCceEEEEecC
Q psy11885 12 SPPEDGITAVKF-----APNSNQFLLASSWDCNVSLYDITNN-------N-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLD 77 (327)
Q Consensus 12 ~~~~~~I~~i~f-----s~~~~~~l~s~~~d~~i~iwd~~~~-------~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~D 77 (327)
..|.+.|++++| ++.++.+|++|+.|++|++||+..+ . .....+|...|.+++|+ ++..+++|+.|
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D 97 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence 458889999999 6634679999999999999998753 2 23345799999999995 77889999999
Q ss_pred CcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee---eCCCcEEE--EecCC---
Q psy11885 78 CTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY---TQPDKVFT--MSLCG--- 148 (327)
Q Consensus 78 g~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~---~~~~~~~~--~~~~~--- 148 (327)
++|++||++++.. ..+.+|...|.+++|+|+++.|++++.|++|++||+......... .....+.+ +++.+
T Consensus 98 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccc
Confidence 9999999988765 457789999999999999999999999999999999743222211 11223333 44433
Q ss_pred -------CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceee
Q psy11885 149 -------EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA 221 (327)
Q Consensus 149 -------~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 221 (327)
..+++++.|+.|++||.+. +..... ........+++++|+++.+++++.++.+.+|....... ....
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~--~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~---~~~~ 251 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTF--KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY---PQRE 251 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEETTT-EEEEEE--ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS---CSEE
T ss_pred cccCCCCCEEEEEcCCCEEEEEcCCC-ceeEEE--cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc---ccee
Confidence 5799999999999999543 221111 11223457888999999899999999888765422111 1111
Q ss_pred eeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeee--ecC-----------cCCcceEEEEECCC
Q psy11885 222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC--QFH-----------RYDTGITSLCFSYD 288 (327)
Q Consensus 222 ~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~--~~~-----------~~~~~v~~l~fspd 288 (327)
+. + ..+|.+++|+|+++++++| .|+.|++||+.+++... .+. +|...|++++|+|+
T Consensus 252 ~~-~---------~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 252 FD-A---------GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320 (343)
T ss_dssp EE-C---------SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred ec-C---------CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence 11 1 0148899999999887755 57889999988765433 332 56678999999999
Q ss_pred CCEEEEEEcccc
Q psy11885 289 GNVLAIACSYNY 300 (327)
Q Consensus 289 g~~la~~~~~~~ 300 (327)
|++||+|+.++.
T Consensus 321 g~~l~sg~~Dg~ 332 (343)
T 2xzm_R 321 GKKLFAGFTDGV 332 (343)
T ss_dssp SCCEEEEETTSE
T ss_pred CCeEEEecCCce
Confidence 999999985543
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=260.38 Aligned_cols=283 Identities=13% Similarity=0.147 Sum_probs=195.1
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC--eEEEEe--c-CCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN--NLRLKY--A-HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF 85 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~--~-h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~ 85 (327)
..|.+.|++++|+|+ +|++|+.|++|++||+..+ +..... . |..+|.+++|+ ++..+++|+.|++|++||+
T Consensus 11 ~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp ECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred ccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence 457889999999983 8999999999999999875 333322 3 89999999995 7888999999999999998
Q ss_pred CCC-------c-eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC----ceeeeeeCC-CcE--EEEecCCCe
Q psy11885 86 NTQ-------T-ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS----RCVGNYTQP-DKV--FTMSLCGEK 150 (327)
Q Consensus 86 ~~~-------~-~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~----~~~~~~~~~-~~~--~~~~~~~~~ 150 (327)
+.. . ...+.+|...|.+++|+|++++|++|+.|++|++||++.. +++..+..+ ..+ +.+++++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 167 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL 167 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCE
Confidence 532 1 2346789999999999999999999999999999999532 345555443 234 456677889
Q ss_pred EEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeC--CCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885 151 FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPN--KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK 228 (327)
Q Consensus 151 ~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~ 228 (327)
+++++.|++|++||+++...........+.....++.++|+ ...+++++.++.+.+|.............. ......
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~~~~~~ 246 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV-CEAILP 246 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE-EEEECC
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE-Eeeecc
Confidence 99999999999999875421111111122234567788887 345677778888888655422110000000 000000
Q ss_pred cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce--eeee-cCcCCc-ceEEEEECC--CCCEEEEEEcccccc
Q psy11885 229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK--RLCQ-FHRYDT-GITSLCFSY--DGNVLAIACSYNYEL 302 (327)
Q Consensus 229 ~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~--~~~~-~~~~~~-~v~~l~fsp--dg~~la~~~~~~~~~ 302 (327)
..|..+|.+++|+|++ +||+|+.||+|+|||..+++ .+.. ...|.. .|++++|+| ++++||+|+.++...
T Consensus 247 ---~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 247 ---DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp ---SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred ---cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence 0122368999999765 89999999999999988763 2322 356766 899999999 799999998665433
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3e-35 Score=276.55 Aligned_cols=269 Identities=21% Similarity=0.304 Sum_probs=218.2
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
..|.+.|++++|+|+ +.+|++++.|++|++||....++.....|...+.+++|+ ++..+++|+.|+.|++||.+....
T Consensus 300 ~~h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~ 378 (577)
T 2ymu_A 300 TGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 378 (577)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEE
T ss_pred ecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEE
Confidence 457789999999995 579999999999999999888877777899999999995 788999999999999999766555
Q ss_pred eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885 91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKVCIWDLRN 167 (327)
Q Consensus 91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~ 167 (327)
..+..|...|.+++|+|++++|++++.|+.|++||. +++.+..+..+ ..+ +.+++++..+++++.|++|++||+..
T Consensus 379 ~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~ 457 (577)
T 2ymu_A 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG 457 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 667889999999999999999999999999999995 56666666543 233 45667788999999999999999753
Q ss_pred CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885 168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247 (327)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~ 247 (327)
+.+.... .......+++++|+++.+++++.++.+.+|..+ . .....+..|. .+|++++|+|++
T Consensus 458 -~~~~~~~--~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~---~~~~~~~~h~---------~~v~~l~~s~dg 520 (577)
T 2ymu_A 458 -QLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--G---QLLQTLTGHS---------SSVRGVAFSPDG 520 (577)
T ss_dssp -CEEEEEE--CCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--S---CEEEEEECCS---------SCEEEEEECTTS
T ss_pred -CEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--C---CEEEEEeCCC---------CCEEEEEEcCCC
Confidence 3222111 222345788899998888888888887775532 1 1222333332 258999999999
Q ss_pred CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 248 ~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~ 300 (327)
++||+++.||+|+|||. +++.+..+.+|..+|++|+|+|||++|++++.+..
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT 572 (577)
T ss_dssp SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 99999999999999995 67888889999999999999999999999986654
No 20
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=260.21 Aligned_cols=274 Identities=21% Similarity=0.285 Sum_probs=208.6
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEEC---CCcEEEEECCCCeEE--EEecCCCceeeEEEeC----CceEEEEecCCcEEE
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSW---DCNVSLYDITNNNLR--LKYAHSDPVLDCCFQD----AVHSFSGGLDCTLKM 82 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~---d~~i~iwd~~~~~~~--~~~~h~~~v~~~~~~~----~~~~~sgs~Dg~i~v 82 (327)
..|.+.|++++|+|++..++++++. |+.|++||+.+++.. ....|..+|.+++|++ +..+++|+.|+.|++
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 94 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI 94 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence 4478899999999976667777776 999999999988753 3447899999999963 589999999999999
Q ss_pred EEcCCCc--eeeeecCCccEEEEEE------eCCCCEEEEEECCCeEEEEeCCCCc-eeeeeeCC-----CcEEEEe---
Q psy11885 83 FDFNTQT--ETVIGTHDQPIRAVEY------SDEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQP-----DKVFTMS--- 145 (327)
Q Consensus 83 wd~~~~~--~~~~~~h~~~V~~l~~------~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~~-----~~~~~~~--- 145 (327)
||++++. ...+..|...|.+++| +++++.|++++.|++|++||+++++ .+..+..+ ..+.++.
T Consensus 95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN 174 (357)
T ss_dssp ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC
T ss_pred EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe
Confidence 9998775 3457789999999955 6789999999999999999999876 55555431 1344443
Q ss_pred ---cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEee---CCCceEEEeecCeEEEEEccCCcccccce
Q psy11885 146 ---LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP---NKQGYVLSSIEGRAAVEYLDTGPEMQKMK 219 (327)
Q Consensus 146 ---~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 219 (327)
+++..+++++.|+.|++||+++.+.... ........++.+.| ++..+++++.++.+.+|............
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 251 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWE---TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA 251 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCceeee---cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccccee
Confidence 5688899999999999999998764222 12233457888888 77888888888888775544322211111
Q ss_pred e-eeeeeeeccCCeeeEEEeeEEEEecCCC-eEEEecCCCeEEEEeCCCc-------------------eeeeecCcCCc
Q psy11885 220 Y-AFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDGFNK-------------------KRLCQFHRYDT 278 (327)
Q Consensus 220 ~-~~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs~dg~i~iWd~~~~-------------------~~~~~~~~~~~ 278 (327)
. .+..| ..+|.+++|+|+++ +|++|+.||.|++||+.++ +.+..+..|..
T Consensus 252 ~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (357)
T 3i2n_A 252 SVSEKAH---------KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ 322 (357)
T ss_dssp EEEEECC---------SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS
T ss_pred eeccCCC---------cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC
Confidence 0 01122 23689999999998 8999999999999998753 34566778888
Q ss_pred ceEEEEECCCCCEEE-EEEc
Q psy11885 279 GITSLCFSYDGNVLA-IACS 297 (327)
Q Consensus 279 ~v~~l~fspdg~~la-~~~~ 297 (327)
+|++++|+|+|++|| +++.
T Consensus 323 ~v~~~~~s~~~~~l~~s~~~ 342 (357)
T 3i2n_A 323 PISSLDWSPDKRGLCVCSSF 342 (357)
T ss_dssp CEEEEEECSSSTTEEEEEET
T ss_pred CeeEEEEcCCCCeEEEEecC
Confidence 999999999999999 5663
No 21
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-34 Score=258.15 Aligned_cols=279 Identities=11% Similarity=0.081 Sum_probs=198.5
Q ss_pred CCeeEEEEecCCCcEEEEEECCC-------cEEEEECCCCe------EE-----EEecCCCceeeEEEeCCceEE-----
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDC-------NVSLYDITNNN------LR-----LKYAHSDPVLDCCFQDAVHSF----- 72 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~-------~i~iwd~~~~~------~~-----~~~~h~~~v~~~~~~~~~~~~----- 72 (327)
-+|.+++|+|+ +++|++||.|. .|++|++..+. +. .+..|.+.|.++++.. ..++
T Consensus 15 ~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~-~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK-GIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET-TEEEEECCC
T ss_pred CCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC-CEEEEEECC
Confidence 47999999995 68999987543 59999986542 11 1224677788877643 3343
Q ss_pred ------EEecCCcEEEEEcCCCcee--e--------eecCCccEEEEEEeCCCCEEEEE--ECCCeEEEEeCCCCceeee
Q psy11885 73 ------SGGLDCTLKMFDFNTQTET--V--------IGTHDQPIRAVEYSDEVNCILTG--SWDTSVKMWDPRSSRCVGN 134 (327)
Q Consensus 73 ------sgs~Dg~i~vwd~~~~~~~--~--------~~~h~~~V~~l~~~~~~~~l~sg--s~d~~i~lwdl~~~~~~~~ 134 (327)
+|+.|+++|+|++++.... . ...++..+++++|+|||++++++ +.|++|++||+++++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 4567889999998765321 1 12345679999999999987755 4789999999999998888
Q ss_pred eeCCCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCe--EEEEEcc
Q psy11885 135 YTQPDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGR--AAVEYLD 210 (327)
Q Consensus 135 ~~~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~ 210 (327)
+.....+ +++++++..+++++.+ .+++|+..+.+...............+++++|++..+++++.++. ..++.|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 7765544 5567778888888754 566666665554333222233445678899999988888887764 3444454
Q ss_pred CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec-CcCCcceEEEEECCCC
Q psy11885 211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF-HRYDTGITSLCFSYDG 289 (327)
Q Consensus 211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~-~~~~~~v~~l~fspdg 289 (327)
......... ..+... .+..+|++++|+|||++||+|+.|++|+|||+.+++.+..+ .+|..+|++|+|||||
T Consensus 252 ~~~~~~~~~---~~~~~~----~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 252 IKSGNTSVL---RSKQVT----NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EETTEEEEE---EEEEEE----SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred cccceecce---eeeeec----CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 322111111 111111 11236899999999999999999999999999999988875 6899999999999999
Q ss_pred CEEEEEEccccccCC
Q psy11885 290 NVLAIACSYNYELET 304 (327)
Q Consensus 290 ~~la~~~~~~~~~~~ 304 (327)
++||+|+.+.....+
T Consensus 325 ~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 325 TYVASVSAANTIHII 339 (365)
T ss_dssp CEEEEEETTSEEEEE
T ss_pred CEEEEEeCCCeEEEE
Confidence 999999877665554
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.2e-34 Score=268.09 Aligned_cols=292 Identities=18% Similarity=0.247 Sum_probs=227.0
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
..|...|++++|+|+ +++|++++.|+.|++||...........|...|.+++|+ ++..+++++.|++|++||++....
T Consensus 259 ~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~ 337 (577)
T 2ymu_A 259 TGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL 337 (577)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE
T ss_pred ecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 457789999999995 578999999999999998766666667899999999995 788999999999999999987776
Q ss_pred eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-c--EEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885 91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-K--VFTMSLCGEKFVVGTAGRKVCIWDLRN 167 (327)
Q Consensus 91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~d~~v~iwD~~~ 167 (327)
..+..|...|.+++|+|+++.|++++.|+.|++||. +++.+..+..+. . .+.++++++.+++++.|+.|++||...
T Consensus 338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~ 416 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 416 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 777889999999999999999999999999999995 566666665432 3 355677888999999999999999643
Q ss_pred CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885 168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247 (327)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~ 247 (327)
+.+.... .......+++++|++..+++++.++.+.+|... . .....+..|. .+|.+++|+|++
T Consensus 417 -~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~---~~~~~~~~~~---------~~v~~~~~spd~ 479 (577)
T 2ymu_A 417 -QLLQTLT--GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--G---QLLQTLTGHS---------SSVRGVAFSPDG 479 (577)
T ss_dssp -CEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--S---CEEEEEECCS---------SCEEEEEECTTS
T ss_pred -CEEEEec--CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--C---CEEEEEcCCC---------CCEEEEEEcCCC
Confidence 3221111 122345678899998888888888887775432 1 1122223332 258899999999
Q ss_pred CeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCC-------CCCCCCcEEEEEcc
Q psy11885 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPP-------DPIPPNNIFIRHVT 320 (327)
Q Consensus 248 ~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 320 (327)
++||+++.|++|++||. +++.+..+.+|...|++|+|||||++||+++.+.....+.. ...|...|.-+...
T Consensus 480 ~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs 558 (577)
T 2ymu_A 480 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 558 (577)
T ss_dssp CEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEEC
T ss_pred CEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEc
Confidence 99999999999999995 67888889999999999999999999999987665443321 11244555555555
Q ss_pred ccc
Q psy11885 321 DQE 323 (327)
Q Consensus 321 ~~~ 323 (327)
+++
T Consensus 559 ~dg 561 (577)
T 2ymu_A 559 PDG 561 (577)
T ss_dssp TTS
T ss_pred CCC
Confidence 544
No 23
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.2e-35 Score=252.58 Aligned_cols=238 Identities=16% Similarity=0.196 Sum_probs=179.8
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC--e-EEEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEEc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN--N-LRLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFDF 85 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~--~-~~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd~ 85 (327)
..|.+.|++++|+|+ +++||+|+.|++|+|||+.++ + +..+.+|.++|.+++|+ + +..++||+.|++|++||+
T Consensus 6 ~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred cCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 457889999999995 579999999999999999753 3 34556799999999995 3 789999999999999999
Q ss_pred CCCce---eeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCce--eeeeeC-CCcEEEE--ecC--------
Q psy11885 86 NTQTE---TVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRC--VGNYTQ-PDKVFTM--SLC-------- 147 (327)
Q Consensus 86 ~~~~~---~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~--~~~~~~-~~~~~~~--~~~-------- 147 (327)
+++.. ..+..|...|.+++|+|+ +..|++|+.|++|++||++++.. ...+.. ...+.++ ++.
T Consensus 85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 164 (297)
T 2pm7_B 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (297)
T ss_dssp SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence 87642 345679999999999997 88999999999999999987632 222332 2234443 333
Q ss_pred -----CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee
Q psy11885 148 -----GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF 222 (327)
Q Consensus 148 -----~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 222 (327)
+..|++++.|++|++||+++.+.. . .. ...+
T Consensus 165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~---------~--~~---------------------------------~~~l 200 (297)
T 2pm7_B 165 NGTKESRKFVTGGADNLVKIWKYNSDAQT---------Y--VL---------------------------------ESTL 200 (297)
T ss_dssp -----CCEEEEEETTSCEEEEEEETTTTE---------E--EE---------------------------------EEEE
T ss_pred CCCCCcceEEEEcCCCcEEEEEEcCCCce---------E--EE---------------------------------EEEe
Confidence 357999999999999998653210 0 00 0001
Q ss_pred eeeeeccCCeeeEEEeeEEEEecCC---CeEEEecCCCeEEEEeCCCce---eeeec--CcCCcceEEEEECCCCCEEEE
Q psy11885 223 KCHRIKEDGIEKIYPVNAISFHQEY---NTFATGGSDGYVNIWDGFNKK---RLCQF--HRYDTGITSLCFSYDGNVLAI 294 (327)
Q Consensus 223 ~~h~~~~~~~~~~~~v~~v~~spd~---~~lasgs~dg~i~iWd~~~~~---~~~~~--~~~~~~v~~l~fspdg~~la~ 294 (327)
..|. .+|.+++|+|++ ++||+||.|++|+|||+.+.. ....+ ..|...|++++|||+|++||+
T Consensus 201 ~~H~---------~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las 271 (297)
T 2pm7_B 201 EGHS---------DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271 (297)
T ss_dssp CCCS---------SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred cCCC---------CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEE
Confidence 1121 258899999995 899999999999999987642 11222 467778999999999999999
Q ss_pred EEccccccC
Q psy11885 295 ACSYNYELE 303 (327)
Q Consensus 295 ~~~~~~~~~ 303 (327)
++.++....
T Consensus 272 ~~~D~~v~l 280 (297)
T 2pm7_B 272 SGGDNKVTL 280 (297)
T ss_dssp EETTSCEEE
T ss_pred EcCCCcEEE
Confidence 987654433
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.1e-35 Score=260.64 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=214.6
Q ss_pred cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-------EEEEecCCCceeeEEEe-C----C---ceEEEE
Q psy11885 10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-------LRLKYAHSDPVLDCCFQ-D----A---VHSFSG 74 (327)
Q Consensus 10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~h~~~v~~~~~~-~----~---~~~~sg 74 (327)
....|.+.|++++|+| .+|++++.|++|++||+.+++ ......|..+|.+++|+ + + ..++++
T Consensus 11 ~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 3456889999999998 589999999999999999876 56666899999999995 5 6 899999
Q ss_pred ecCCcEEEEEcCCCc------eeeeecC-----CccEEEEEEe----CCCCE-EEEEECCCeEEEEeCCC------Ccee
Q psy11885 75 GLDCTLKMFDFNTQT------ETVIGTH-----DQPIRAVEYS----DEVNC-ILTGSWDTSVKMWDPRS------SRCV 132 (327)
Q Consensus 75 s~Dg~i~vwd~~~~~------~~~~~~h-----~~~V~~l~~~----~~~~~-l~sgs~d~~i~lwdl~~------~~~~ 132 (327)
+.|+.|++||++++. ...+..| ...|.+++|+ |+++. |++++.|+.|++||+++ ++.+
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 999999999998776 4456677 5899999999 99999 99999999999999988 6665
Q ss_pred e-----eee----------CCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeec-ccc---eeeeEEeEEeeCCC
Q psy11885 133 G-----NYT----------QPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRE-SSL---KFQTRCIKCFPNKQ 193 (327)
Q Consensus 133 ~-----~~~----------~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~ 193 (327)
. .+. .....+.+++++ .+++++.|+.|++||+++.+.+..... ... .....+++++|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 5 552 122345667778 999999999999999998764433222 002 33467888999988
Q ss_pred ceEEEeec---CeEEEEEccCCcccccceeeeeeeee----ccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885 194 GYVLSSIE---GRAAVEYLDTGPEMQKMKYAFKCHRI----KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266 (327)
Q Consensus 194 ~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~h~~----~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~ 266 (327)
.+++++.+ +.+.+|....... ...+..... ......+..+|.+++|+|++++|++|+.||.|++||+.+
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGER----IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCE----EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEecCCCCceEEEEECCCCcc----cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 88888887 6666655443321 112221000 000000223689999999999999999999999999999
Q ss_pred ceeeeecC------cC---------------CcceEEEEECCCC----------CEEEEEEccc
Q psy11885 267 KKRLCQFH------RY---------------DTGITSLCFSYDG----------NVLAIACSYN 299 (327)
Q Consensus 267 ~~~~~~~~------~~---------------~~~v~~l~fspdg----------~~la~~~~~~ 299 (327)
++.+..+. .| ..+|++++|+|+| ++|++++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 99888887 77 8899999999999 7999998543
No 25
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-34 Score=252.04 Aligned_cols=271 Identities=15% Similarity=0.170 Sum_probs=215.4
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|+ +.+|++++.|+.|++||+.+++... ...|...|.+++|+ ++..+++++.|+.|++||+.++.
T Consensus 29 ~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 29 TGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp ECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred EEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 447789999999995 5799999999999999999888544 44699999999995 78899999999999999999887
Q ss_pred eeeeecCCccEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeee-----------eeC-----CCcEEEEecCC
Q psy11885 90 ETVIGTHDQPIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGN-----------YTQ-----PDKVFTMSLCG 148 (327)
Q Consensus 90 ~~~~~~h~~~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~-----------~~~-----~~~~~~~~~~~ 148 (327)
......|..+|.+++|+|+++.+++++.+ +.|++||++..+.... +.. ......+++++
T Consensus 108 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (369)
T 3zwl_B 108 CVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG 187 (369)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG
T ss_pred EEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC
Confidence 65544588899999999999999999999 9999999976543221 111 12234566778
Q ss_pred CeEEEEeCCCeEEEEECCCC-ccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885 149 EKFVVGTAGRKVCIWDLRNM-GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 227 (327)
Q Consensus 149 ~~~~~~~~d~~v~iwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~ 227 (327)
+.+++++.|+.|++||+++. ..+..... ......++.++|++..+++++.++.+.+|........ ..+. +
T Consensus 188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~-~-- 258 (369)
T 3zwl_B 188 KYIIAGHKDGKISKYDVSNNYEYVDSIDL--HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL----KKYE-T-- 258 (369)
T ss_dssp CEEEEEETTSEEEEEETTTTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE----EEEE-C--
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEEEec--CCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee----eeec-C--
Confidence 89999999999999999873 32222211 2234577888998888888888888777655443221 1111 1
Q ss_pred ccCCeeeEEEeeEEEEecCCCeEEEecCCC--------------eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEE
Q psy11885 228 KEDGIEKIYPVNAISFHQEYNTFATGGSDG--------------YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293 (327)
Q Consensus 228 ~~~~~~~~~~v~~v~~spd~~~lasgs~dg--------------~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la 293 (327)
..++.+++|+|+++++++++.++ .+++||..+++.+..+.+|...|++++|+|+|++||
T Consensus 259 -------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 331 (369)
T 3zwl_B 259 -------DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA 331 (369)
T ss_dssp -------SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred -------CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEE
Confidence 12578999999999999999988 899999999999999999999999999999999999
Q ss_pred EEEccc
Q psy11885 294 IACSYN 299 (327)
Q Consensus 294 ~~~~~~ 299 (327)
+++.++
T Consensus 332 s~~~dg 337 (369)
T 3zwl_B 332 SGGEDG 337 (369)
T ss_dssp EEETTS
T ss_pred EEcCCC
Confidence 998543
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.9e-34 Score=247.98 Aligned_cols=268 Identities=17% Similarity=0.244 Sum_probs=212.8
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE----EEEe--cCCCceeeEEEe-CCceEEEEecCCcEEEEE
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL----RLKY--AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFD 84 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~--~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd 84 (327)
..|.+.|++++|+|+ +++|++++ |+.|++||+.+++. .... .|...|.+++|+ ++..+++++.|+.|++||
T Consensus 48 ~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 48 LNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp ECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred ccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 357889999999995 57888888 99999999987542 1122 688899999995 778899999999999999
Q ss_pred cCCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEEEeCCC
Q psy11885 85 FNTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGR 158 (327)
Q Consensus 85 ~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~ 158 (327)
++++.. ..+..|...|.+++|+|+++.+++++.|+.|++||+++++.+..+..+ ..+ +.++++++.+++++.|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence 988753 345678899999999999999999999999999999999888777643 334 45566788999999999
Q ss_pred eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885 159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV 238 (327)
Q Consensus 159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v 238 (327)
.|++||+++.+..... .......++.++|+++.+++++.++.+.++....... ..+..|. .++
T Consensus 206 ~i~~~d~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~---------~~v 268 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHE---------SCV 268 (337)
T ss_dssp EEEEEETTTTEEEEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCS---------SCE
T ss_pred cEEEEECCCCceEeee---cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCc---------cce
Confidence 9999999987643322 1223457788889988888888888887765543321 1122221 258
Q ss_pred eEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885 239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~ 299 (327)
.+++|+|++++|++++.||.|++||+.+++.+... .+...|.+++|+|++++|++++.++
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTS
T ss_pred eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCC
Confidence 89999999999999999999999999988877443 4677899999999999999998543
No 27
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.6e-34 Score=275.54 Aligned_cols=275 Identities=19% Similarity=0.228 Sum_probs=208.7
Q ss_pred CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-----e-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885 11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-----N-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF 83 (327)
Q Consensus 11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-----~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw 83 (327)
-..|.+.|++|+|+|++..+|++||.|++|++||+..+ . .....+|...|.+++|+ ++..++||+.|++|++|
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 34688999999999976689999999999999999753 2 23456799999999995 78899999999999999
Q ss_pred EcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee----CCCcEEE--EecCC--CeEEEE
Q psy11885 84 DFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT----QPDKVFT--MSLCG--EKFVVG 154 (327)
Q Consensus 84 d~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~----~~~~~~~--~~~~~--~~~~~~ 154 (327)
|+.++.. ..+.+|...|.+++|+|+++.|++|+.|++|++||+.......... +...+.+ +++++ ..++++
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 9988765 4567899999999999999999999999999999986543222211 1223444 44443 469999
Q ss_pred eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeee
Q psy11885 155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEK 234 (327)
Q Consensus 155 ~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 234 (327)
+.|++|++||+++.+...... .+.....+++++|++..+++++.++.+.+|....+... ..+..
T Consensus 538 s~d~~v~vwd~~~~~~~~~~~--~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~---------- 601 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLRSTLA--GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL----YSLEA---------- 601 (694)
T ss_dssp ETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE----ECCBC----------
T ss_pred eCCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE----EEecC----------
Confidence 999999999998765432222 22234578889999988899999999888665543321 11111
Q ss_pred EEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCC-------------------cceEEEEECCCCCEEEEE
Q psy11885 235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD-------------------TGITSLCFSYDGNVLAIA 295 (327)
Q Consensus 235 ~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~-------------------~~v~~l~fspdg~~la~~ 295 (327)
...+.+++|+|++.+|++++ |+.|+|||+.+++.+..+..+. ..|++++|||||++|++|
T Consensus 602 ~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 602 NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence 12478999999998887775 5669999999988776553211 137899999999999999
Q ss_pred Ecccccc
Q psy11885 296 CSYNYEL 302 (327)
Q Consensus 296 ~~~~~~~ 302 (327)
+.++...
T Consensus 681 s~Dg~i~ 687 (694)
T 3dm0_A 681 YTDGVIR 687 (694)
T ss_dssp ETTSEEE
T ss_pred cCCCeEE
Confidence 8665443
No 28
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2e-34 Score=254.96 Aligned_cols=280 Identities=16% Similarity=0.255 Sum_probs=207.8
Q ss_pred cCCCCCCCeeEEEEecC---CCcEEEEEECCCcEEEEECCCCeE-EEEe-----cCCCceeeEEEe-C----CceEEEEe
Q psy11885 10 LNSPPEDGITAVKFAPN---SNQFLLASSWDCNVSLYDITNNNL-RLKY-----AHSDPVLDCCFQ-D----AVHSFSGG 75 (327)
Q Consensus 10 ~~~~~~~~I~~i~fs~~---~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-----~h~~~v~~~~~~-~----~~~~~sgs 75 (327)
....|.+.|++++|+|+ +...+++++.++.|++||+.+++. .... .|...|.+++|+ + +..+++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34568899999999984 445677777788999999987653 2222 266789999995 4 46899999
Q ss_pred cCCcEEEEEcCCCcee-eeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeee---e-CCCcEE--EEecC
Q psy11885 76 LDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNY---T-QPDKVF--TMSLC 147 (327)
Q Consensus 76 ~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~---~-~~~~~~--~~~~~ 147 (327)
.|+.|++||++++... .+..|..+|.+++|+| +++.|++|+.|+.|++||+++++.+..+ . ....+. .++++
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 9999999999887653 5667999999999999 8999999999999999999999888776 2 233444 45567
Q ss_pred CCeEEEEeCCCeEEEEECCCCccceeeec--------------------------ccceeeeEEeEEeeCCCceEEEeec
Q psy11885 148 GEKFVVGTAGRKVCIWDLRNMGYIMQRRE--------------------------SSLKFQTRCIKCFPNKQGYVLSSIE 201 (327)
Q Consensus 148 ~~~~~~~~~d~~v~iwD~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (327)
+..+++++.|+.|++||+++.+....... ........++.+. ++.+++++.+
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 88999999999999999987643211100 0012234556665 5677788888
Q ss_pred CeEEEEEccCCccccc----------ceeeeeeeeeccCCeeeEEEeeEEEEecC--CCeEEEecCCCeEEEEeCCCcee
Q psy11885 202 GRAAVEYLDTGPEMQK----------MKYAFKCHRIKEDGIEKIYPVNAISFHQE--YNTFATGGSDGYVNIWDGFNKKR 269 (327)
Q Consensus 202 ~~~~i~~~~~~~~~~~----------~~~~~~~h~~~~~~~~~~~~v~~v~~spd--~~~lasgs~dg~i~iWd~~~~~~ 269 (327)
+.+.+|.......... ....+..| ..+|.+++|+|+ +++|++|+.||.|++||+.+++.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS---------QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS---------SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred CEEEEEeCCCccccccccccCCcchheecccccc---------CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 8888766543322100 01111111 125889999999 99999999999999999988754
Q ss_pred e----eecCcC--CcceEEEEECCCCCEEEEEEcccc
Q psy11885 270 L----CQFHRY--DTGITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 270 ~----~~~~~~--~~~v~~l~fspdg~~la~~~~~~~ 300 (327)
. ..+..| ..+|++++|+|+|++||+++.++.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 358 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 358 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence 3 356555 678999999999999999986543
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-33 Score=247.15 Aligned_cols=272 Identities=21% Similarity=0.282 Sum_probs=205.3
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe------EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEE
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFD 84 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd 84 (327)
..|.+.|++|+|+|+++++|++||.|++|+|||+..++ .....+|...|.+++|+ ++.++++|+.|+.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 45889999999999767899999999999999987643 23345799999999995 788999999999999999
Q ss_pred cCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee-eeC-CCcE--EEEecC--CCeEEEEeCC
Q psy11885 85 FNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN-YTQ-PDKV--FTMSLC--GEKFVVGTAG 157 (327)
Q Consensus 85 ~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~-~~~-~~~~--~~~~~~--~~~~~~~~~d 157 (327)
....... ....+...+..+.++++++.|++|+.|+.+++||+........ ... ...+ ..+.+. ...+++++.|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 9877654 3456777888999999999999999999999999876543322 222 2233 334443 3457889999
Q ss_pred CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885 158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP 237 (327)
Q Consensus 158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 237 (327)
+.|++||+++.+....... ......+++++|+++.+++++.++.+.+|....... ...+..+ ..
T Consensus 195 ~~i~i~d~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~~----------~~ 258 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIG--HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH----LYTLDGG----------DI 258 (340)
T ss_dssp SCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE----EEEEECS----------SC
T ss_pred CEEEEEECCCCceeeEecC--CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce----eeeecCC----------ce
Confidence 9999999998764332221 223457888999988889999888888765543321 1111111 14
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec---------CcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF---------HRYDTGITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~---------~~~~~~v~~l~fspdg~~la~~~~~~~ 300 (327)
+.+++|+|++. +++++.|+.|++||+.++..+..+ ..|...|++|+|||||++||+|+.++.
T Consensus 259 v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~ 329 (340)
T 4aow_A 259 INALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329 (340)
T ss_dssp EEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 78999999875 556667999999999887665543 356778999999999999999986543
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.5e-35 Score=266.17 Aligned_cols=279 Identities=16% Similarity=0.212 Sum_probs=198.2
Q ss_pred cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE---EEEecCCCceeeEEEe--CCceEEEEecCCcEEEEE
Q psy11885 10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL---RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFD 84 (327)
Q Consensus 10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd 84 (327)
...+|+..|++|+|+|.++.+||+|+.||+|+|||+.+++. ....+|.++|.+++|+ ++.+++|||.|++|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 34567789999999997677999999999999999987652 2334799999999996 578999999999999999
Q ss_pred cCCCceeeeec---CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcEEEE--ecCCC-eEEEEeCC
Q psy11885 85 FNTQTETVIGT---HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTM--SLCGE-KFVVGTAG 157 (327)
Q Consensus 85 ~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~~~~--~~~~~-~~~~~~~d 157 (327)
++++....+.. +...+.+++|++++++|++|+.|+.|++||++. +.+..+.. ...+.++ ++.+. .+++++.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 98776544332 344678999999999999999999999999875 44455543 3345444 44554 67889999
Q ss_pred CeEEEEECCCCccceee-ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885 158 RKVCIWDLRNMGYIMQR-RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236 (327)
Q Consensus 158 ~~v~iwD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 236 (327)
+.|++||+++.+..... ....+.....+++++|++..+++++.++.+.+|......... .+..|...... +.
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~----~~~~~~~~~~~--~~- 345 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL----GLIPHPHRHFQ--HL- 345 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE----EECCCCCCCCS--SS-
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce----EEecccccccc--cc-
Confidence 99999999876532111 111223345778889999999999999998886655433211 11111111000 00
Q ss_pred EeeEEEEecCCCeEEEe-----------c-CCCeEEEEeCCCceeeeecC-cCCcceEEE-EECCCCCEEEEEE
Q psy11885 237 PVNAISFHQEYNTFATG-----------G-SDGYVNIWDGFNKKRLCQFH-RYDTGITSL-CFSYDGNVLAIAC 296 (327)
Q Consensus 237 ~v~~v~~spd~~~lasg-----------s-~dg~i~iWd~~~~~~~~~~~-~~~~~v~~l-~fspdg~~la~~~ 296 (327)
.+....|+|++..++++ + .+++|++||..+++.+..+. .|...|.++ +|||||++||+|+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 01123444444444443 2 44689999999998887764 566678887 7999999999875
No 31
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.8e-34 Score=253.20 Aligned_cols=279 Identities=15% Similarity=0.136 Sum_probs=208.2
Q ss_pred ecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe---cCCCceeeEEEeC--CceEEEEecCCcEEEE
Q psy11885 9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY---AHSDPVLDCCFQD--AVHSFSGGLDCTLKMF 83 (327)
Q Consensus 9 ~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~h~~~v~~~~~~~--~~~~~sgs~Dg~i~vw 83 (327)
.....|.+.|++++|+|++..+|++|+.|+.|++||+.+++..... +|...|.+++|++ +..+++++.|+.|++|
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 3346688999999999965489999999999999999987744333 5999999999964 5789999999999999
Q ss_pred EcCCCceeeee---cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEE--EEecCCC-eEEEEeC
Q psy11885 84 DFNTQTETVIG---THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVF--TMSLCGE-KFVVGTA 156 (327)
Q Consensus 84 d~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~--~~~~~~~-~~~~~~~ 156 (327)
|+++.....+. .|...|.+++|+|+++.|++|+.|+.|++||+ +++++..+..+ ..+. .+++.+. .+++++.
T Consensus 147 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 225 (383)
T 3ei3_B 147 DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSV 225 (383)
T ss_dssp ETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEET
T ss_pred ECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeC
Confidence 99875544443 34588999999999999999999999999999 46666666543 3344 4555666 8999999
Q ss_pred CCeEEEEECCCCcc---ceeeecccceeeeEEeEEee-CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC--
Q psy11885 157 GRKVCIWDLRNMGY---IMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED-- 230 (327)
Q Consensus 157 d~~v~iwD~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~-- 230 (327)
|+.|++||+++.+. ..... .......+++++| ++..+++++.++.+.+|......... .+..|.....
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~ 299 (383)
T 3ei3_B 226 DATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD----QIIIHPHRQFQH 299 (383)
T ss_dssp TSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS----EEEECCBCCCTT
T ss_pred CCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc----cccccccccccc
Confidence 99999999987321 11111 2233467888999 88888888888888886655433221 1122211100
Q ss_pred --Cee-e---EEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc--CCcceEEEEECCCCCEEEEEE
Q psy11885 231 --GIE-K---IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR--YDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 231 --~~~-~---~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~--~~~~v~~l~fspdg~~la~~~ 296 (327)
... . ...+..++|+|++++ +|+.|++|++||+.+++.+..+.+ +...+..++|+|||++||+|+
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence 000 0 012445788888877 899999999999999999888876 345677789999999999995
No 32
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.9e-34 Score=250.68 Aligned_cols=237 Identities=17% Similarity=0.296 Sum_probs=190.9
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-----EEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCC
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-----LRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT 87 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~ 87 (327)
.|...|.+++|+|+ +.+|++++.|+.|++||+.+++ .....+|...|.++.|++...+++++.|++|++||+++
T Consensus 95 ~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~ 173 (340)
T 1got_B 95 LRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173 (340)
T ss_dssp CSSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred cCCccEEEEEECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence 46678999999995 5799999999999999998652 23345799999999998777899999999999999988
Q ss_pred Ccee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEE
Q psy11885 88 QTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIW 163 (327)
Q Consensus 88 ~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iw 163 (327)
+... .+.+|...|.+++|+|+++++++|+.|++|++||++++++...+..+. .+ +++++++..+++++.|++|++|
T Consensus 174 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253 (340)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 7653 567899999999999999999999999999999999999888876543 33 4566778899999999999999
Q ss_pred ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885 164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 243 (327)
Q Consensus 164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~ 243 (327)
|+++.+.+.............+++++|++..+++++.++.+.+|....... ...+..|. .+|.+++|
T Consensus 254 d~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~----~~~~~~h~---------~~v~~~~~ 320 (340)
T 1got_B 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR----AGVLAGHD---------NRVSCLGV 320 (340)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEECCS---------SCEEEEEE
T ss_pred ECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE----eeEeecCC---------CcEEEEEE
Confidence 999765433222222222457788999999899999888888765543321 22233332 26899999
Q ss_pred ecCCCeEEEecCCCeEEEEe
Q psy11885 244 HQEYNTFATGGSDGYVNIWD 263 (327)
Q Consensus 244 spd~~~lasgs~dg~i~iWd 263 (327)
+|++.+|||||.|++|+|||
T Consensus 321 s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 321 TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEcCCccEEecC
Confidence 99999999999999999996
No 33
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=254.66 Aligned_cols=272 Identities=15% Similarity=0.178 Sum_probs=206.5
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEEC----CCCe------EEEEe-c----------CCCceeeEEEe-CCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDI----TNNN------LRLKY-A----------HSDPVLDCCFQ-DAV 69 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~----~~~~------~~~~~-~----------h~~~v~~~~~~-~~~ 69 (327)
..|.+.|++++|+|++..+|++++.|+.|++||+ .+++ ..... . |...|.+++|+ ++.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 3455799999999965339999999999999999 7776 22222 2 46689999995 788
Q ss_pred eEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC------------
Q psy11885 70 HSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ------------ 137 (327)
Q Consensus 70 ~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~------------ 137 (327)
.+++|+.|+.|++||........+..|..+|.+++|+|+++.|++++.|+.|++||+++++.+..+..
T Consensus 122 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201 (425)
T ss_dssp EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence 99999999999999955544556778999999999999999999999999999999988765443211
Q ss_pred ---------------------------------------------CCc--EEEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885 138 ---------------------------------------------PDK--VFTMSLCGEKFVVGTAGRKVCIWDLRNMGY 170 (327)
Q Consensus 138 ---------------------------------------------~~~--~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~ 170 (327)
... .+.+++++..+++++.|+.|++||+++.+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 111 234556678899999999999999987654
Q ss_pred ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE
Q psy11885 171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF 250 (327)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l 250 (327)
...... ......++.+.+++ .+++++.++.+.+|....... ...+..|. .++.+++|+|++++|
T Consensus 282 ~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~---------~~i~~~~~s~~~~~l 345 (425)
T 1r5m_A 282 QNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL----LALSIVDG---------VPIFAGRISQDGQKY 345 (425)
T ss_dssp SEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE----EEEEECTT---------CCEEEEEECTTSSEE
T ss_pred ceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE----eEecccCC---------ccEEEEEEcCCCCEE
Confidence 433221 22345778888877 777777788777755543321 11222221 258899999999999
Q ss_pred EEecCCCeEEEEeCCCce--------------------eeeecCcCCc--ceEEEEECCCCCEEEEEEccc
Q psy11885 251 ATGGSDGYVNIWDGFNKK--------------------RLCQFHRYDT--GITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 251 asgs~dg~i~iWd~~~~~--------------------~~~~~~~~~~--~v~~l~fspdg~~la~~~~~~ 299 (327)
++++.||.|++||+.+++ .+..+..|.. .|++++|+|+|++||+++.++
T Consensus 346 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 416 (425)
T 1r5m_A 346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ 416 (425)
T ss_dssp EEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS
T ss_pred EEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc
Confidence 999999999999999887 7788888866 999999999999999998554
No 34
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.9e-35 Score=256.09 Aligned_cols=239 Identities=17% Similarity=0.186 Sum_probs=177.2
Q ss_pred CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE---EEEecCCCceeeEEEe---CCceEEEEecCCcEEEEE
Q psy11885 11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL---RLKYAHSDPVLDCCFQ---DAVHSFSGGLDCTLKMFD 84 (327)
Q Consensus 11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd 84 (327)
...|++.|++++|+|+ +++|++|+.|++|+|||+.+++. ..+.+|.++|.+++|+ ++..++||+.|++|++||
T Consensus 9 ~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp -----CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred cccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 3468889999999995 57999999999999999987752 3455799999999994 378999999999999999
Q ss_pred cCCCce---eeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCce---eeeeeCC---CcEEEEecC------
Q psy11885 85 FNTQTE---TVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRC---VGNYTQP---DKVFTMSLC------ 147 (327)
Q Consensus 85 ~~~~~~---~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~---~~~~~~~---~~~~~~~~~------ 147 (327)
++++.. ..+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.. ...+..+ .....+++.
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 987632 345689999999999997 78999999999999999987532 1222211 122334433
Q ss_pred -----------CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccc
Q psy11885 148 -----------GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQ 216 (327)
Q Consensus 148 -----------~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (327)
+..+++++.|++|++||++..+.. ..+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~------------~~~------------------------------ 205 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW------------KEE------------------------------ 205 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE------------EEE------------------------------
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCcc------------cee------------------------------
Confidence 357899999999999997632100 000
Q ss_pred cceeeeeeeeeccCCeeeEEEeeEEEEecCC----CeEEEecCCCeEEEEeCCCce----eeeecCcCCcceEEEEECCC
Q psy11885 217 KMKYAFKCHRIKEDGIEKIYPVNAISFHQEY----NTFATGGSDGYVNIWDGFNKK----RLCQFHRYDTGITSLCFSYD 288 (327)
Q Consensus 217 ~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~----~~lasgs~dg~i~iWd~~~~~----~~~~~~~~~~~v~~l~fspd 288 (327)
..+..|. .+|.+++|+|++ ++||+|+.|++|+||++.+.. ....+..|...|++++|||+
T Consensus 206 ---~~l~~h~---------~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 273 (316)
T 3bg1_A 206 ---QKLEAHS---------DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT 273 (316)
T ss_dssp ---ECCBCCS---------SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT
T ss_pred ---eecccCC---------CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC
Confidence 0011121 258899999987 789999999999999987621 12334567789999999999
Q ss_pred CCEEEEEEccccccCC
Q psy11885 289 GNVLAIACSYNYELET 304 (327)
Q Consensus 289 g~~la~~~~~~~~~~~ 304 (327)
|++||+++.++....+
T Consensus 274 g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 274 ANILAVSGGDNKVTLW 289 (316)
T ss_dssp TCCEEEEESSSCEEEE
T ss_pred CCEEEEEcCCCeEEEE
Confidence 9999999877655544
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-33 Score=246.71 Aligned_cols=246 Identities=15% Similarity=0.233 Sum_probs=186.9
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|...|++++|+|+ +.+|++++.|++|++||+.+++.. ...+|...|.+++|+ ++..+++|+.|++|++||++...
T Consensus 62 ~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~ 140 (319)
T 3frx_A 62 KGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140 (319)
T ss_dssp ECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE
T ss_pred eCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Confidence 357789999999995 589999999999999999999854 455799999999995 77899999999999999998766
Q ss_pred eeeeecCCccEEEEEEeCC------CCEEEEEECCCeEEEEeCCCCceeeeeeCCC-c--EEEEecCCCeEEEEeCCCeE
Q psy11885 90 ETVIGTHDQPIRAVEYSDE------VNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-K--VFTMSLCGEKFVVGTAGRKV 160 (327)
Q Consensus 90 ~~~~~~h~~~V~~l~~~~~------~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~d~~v 160 (327)
...+.+|...|.++++.|. +..+++++.|++|++||+++.+....+..+. . ..++++++..+++++.|++|
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i 220 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEE
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 6667889999999999885 4589999999999999999988777665432 3 35567778899999999999
Q ss_pred EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885 161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 240 (327)
Q Consensus 161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 240 (327)
++||+++.+.+..... .....+++++|++..++++. ++.+.++.++...........+..+ ...+...+.+
T Consensus 221 ~iwd~~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~ 291 (319)
T 3frx_A 221 MLWNLAAKKAMYTLSA---QDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGY-----SKAAEPHAVS 291 (319)
T ss_dssp EEEETTTTEEEEEEEC---CSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTC-----CGGGCCCEEE
T ss_pred EEEECCCCcEEEEecC---CCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCcccccc-----ccCcCcceeE
Confidence 9999998764433221 22457788888876655544 4556665554322111110000000 0011224789
Q ss_pred EEEecCCCeEEEecCCCeEEEEeCCCc
Q psy11885 241 ISFHQEYNTFATGGSDGYVNIWDGFNK 267 (327)
Q Consensus 241 v~~spd~~~lasgs~dg~i~iWd~~~~ 267 (327)
++|+|||++|++|+.||+|+|||+.++
T Consensus 292 ~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 292 LAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEECCCCCEEEEeecCceEEEEEEeec
Confidence 999999999999999999999998653
No 36
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.1e-34 Score=259.71 Aligned_cols=280 Identities=13% Similarity=0.196 Sum_probs=197.8
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe------------EEEEecCC------------CceeeEEEe-CC
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------------LRLKYAHS------------DPVLDCCFQ-DA 68 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~h~------------~~v~~~~~~-~~ 68 (327)
+.+.|++++|+|+ +.+||+|+.||.|+|||+.+++ .....+|. .+|.+++|+ ++
T Consensus 27 ~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4589999999995 6899999999999999998765 33445787 889999996 44
Q ss_pred --ceEEEEecCCcEEEEEcCCCce-----------------------------------------eeeecCCccEEEEEE
Q psy11885 69 --VHSFSGGLDCTLKMFDFNTQTE-----------------------------------------TVIGTHDQPIRAVEY 105 (327)
Q Consensus 69 --~~~~sgs~Dg~i~vwd~~~~~~-----------------------------------------~~~~~h~~~V~~l~~ 105 (327)
..+++++.|++|++||+..+.. ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 6899999999999999875332 113579999999999
Q ss_pred eCCCCEEEEEECCCeEEEEeCCC-Cceeeee-------e-CCCcE--EEEecCC-CeEEEEeCCCeEEEEECCCCccc--
Q psy11885 106 SDEVNCILTGSWDTSVKMWDPRS-SRCVGNY-------T-QPDKV--FTMSLCG-EKFVVGTAGRKVCIWDLRNMGYI-- 171 (327)
Q Consensus 106 ~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~~-------~-~~~~~--~~~~~~~-~~~~~~~~d~~v~iwD~~~~~~~-- 171 (327)
+|+++.|++| .|++|++||+++ ++++..+ . ....+ ..+++++ ..+++++.|+.|++||+++.+..
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 899999999984 4444422 2 22234 4455666 78999999999999999987641
Q ss_pred -eeeecccce-----------eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCe------e
Q psy11885 172 -MQRRESSLK-----------FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI------E 233 (327)
Q Consensus 172 -~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~------~ 233 (327)
......... ....+++++|++..+++++. +.+.+|...... .....+..|......+ .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 111111110 14578889998887777766 777775544311 1122223332100000 0
Q ss_pred eEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee--------------------------------cCcCCcceE
Q psy11885 234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ--------------------------------FHRYDTGIT 281 (327)
Q Consensus 234 ~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~--------------------------------~~~~~~~v~ 281 (327)
.+..+..++|+|++++|++|+.||.|++||+.+++.+.. ...+...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 000123489999999999999999999999988765431 012345689
Q ss_pred EEEECCCCCEEEEEEccc
Q psy11885 282 SLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 282 ~l~fspdg~~la~~~~~~ 299 (327)
+++|+|+|.+||+++.+.
T Consensus 421 ~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN 438 (447)
T ss_dssp EEEECSSSSEEEEECSSC
T ss_pred EEEECCCCCEEEEEecce
Confidence 999999999999996543
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=261.34 Aligned_cols=273 Identities=13% Similarity=0.191 Sum_probs=210.4
Q ss_pred CCeeEEEEecCCCcEEEEE----------ECCCcEEEEECCCCe---EEEEecCCCceeeEEEe-CCceEEEEecCCcEE
Q psy11885 16 DGITAVKFAPNSNQFLLAS----------SWDCNVSLYDITNNN---LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLK 81 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~----------~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~ 81 (327)
..|++++|+|++..+|+++ +.|+.|++||+.+++ ......|...|.+++|+ ++.++++|+.|+.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 4789999999765599999 899999999998875 34445688999999995 788999999999999
Q ss_pred EEEcCC----C-ceeeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCc------eeeee---e-C--CCcEEE
Q psy11885 82 MFDFNT----Q-TETVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSR------CVGNY---T-Q--PDKVFT 143 (327)
Q Consensus 82 vwd~~~----~-~~~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~------~~~~~---~-~--~~~~~~ 143 (327)
+||+.. . ....+..|...|.+++|+|+ +++|++++.|++|++||+++++ ....+ . . ....+.
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999987 2 23456789999999999998 8999999999999999999876 22222 1 2 223455
Q ss_pred EecC-CCeEEEEeCCCeEEEEECCCCccceeeeccc----ceeeeEEeEEeeCCC-ceEEEeecC---eEEEEEccCCcc
Q psy11885 144 MSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESS----LKFQTRCIKCFPNKQ-GYVLSSIEG---RAAVEYLDTGPE 214 (327)
Q Consensus 144 ~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~---~~~i~~~~~~~~ 214 (327)
++++ +..+++++.|+.|++||+++.+.+....... ......+++++|++. .+++++.++ .+.+|.......
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~ 252 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT 252 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC
Confidence 6666 6789999999999999999876543322211 033467888998864 566666666 666655443211
Q ss_pred cccceeeee-eeeeccCCeeeEEEeeEEEEec-CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCC-CE
Q psy11885 215 MQKMKYAFK-CHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDG-NV 291 (327)
Q Consensus 215 ~~~~~~~~~-~h~~~~~~~~~~~~v~~v~~sp-d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg-~~ 291 (327)
....+. .|. .+|.+++|+| ++++|++++.||+|++||+.+++.+..+..|...|++++|+|++ ++
T Consensus 253 ---~~~~~~~~~~---------~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 253 ---PLQTLNQGHQ---------KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp ---CSBCCCSCCS---------SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred ---CcEEeecCcc---------CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence 111122 222 2588999999 99999999999999999999999999998999999999999999 89
Q ss_pred EEEEEcccc
Q psy11885 292 LAIACSYNY 300 (327)
Q Consensus 292 la~~~~~~~ 300 (327)
||+++.++.
T Consensus 321 l~s~~~d~~ 329 (416)
T 2pm9_A 321 FACASFDNK 329 (416)
T ss_dssp EEECCSSSE
T ss_pred EEEEecCCc
Confidence 998876543
No 38
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=248.61 Aligned_cols=236 Identities=19% Similarity=0.196 Sum_probs=179.7
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-----EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-----LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT 87 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~ 87 (327)
++.+|++++|+|+ ..|++|+.||+|+|||+.+++.. ...+|.+.|.+++|+ ++.++++|+.|++|++||+++
T Consensus 81 ~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 81 TEAGVADLTWVGE--RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp ESSCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 4568999999995 36889999999999999887621 234799999999995 788999999999999999998
Q ss_pred Cce-eeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeC---CCcEEE--EecC-CCeEEEEeCCCe
Q psy11885 88 QTE-TVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQ---PDKVFT--MSLC-GEKFVVGTAGRK 159 (327)
Q Consensus 88 ~~~-~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~~~d~~ 159 (327)
+.. ..+.+|...|.+++|++++ ..|++++.|++|++||++++++...+.. ...+.+ +.+. +..+++|+.|++
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 865 4577899999999999987 5789999999999999999988776643 223334 4443 456889999999
Q ss_pred EEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885 160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV 238 (327)
Q Consensus 160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v 238 (327)
|++||+++.+.+..... +.....+++++|++. .+++++.++.+.+|....+. ...+..|. ..|
T Consensus 239 v~~wd~~~~~~~~~~~~--h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-----~~~~~~H~---------~~V 302 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAV--HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-----LFRSQAHR---------DFV 302 (344)
T ss_dssp EEEEESCC--CCEEEEC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-----EEEECCCS---------SCE
T ss_pred EEEEECCCCcEEEEEcC--CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-----EEEEcCCC---------CCE
Confidence 99999998765433222 223457888999874 46677888888775433321 11222332 368
Q ss_pred eEEEEecCCCe-EEEecCCCeEEEEeCCCc
Q psy11885 239 NAISFHQEYNT-FATGGSDGYVNIWDGFNK 267 (327)
Q Consensus 239 ~~v~~spd~~~-lasgs~dg~i~iWd~~~~ 267 (327)
++++|+|+++. |+|||.|++|++|++.+.
T Consensus 303 ~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 303 RDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 99999999875 679999999999998764
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=258.73 Aligned_cols=277 Identities=13% Similarity=0.158 Sum_probs=209.3
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC----C-eEEEEecCCCceeeEEEe-C-CceEEEEecCCcEEEEEc
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN----N-NLRLKYAHSDPVLDCCFQ-D-AVHSFSGGLDCTLKMFDF 85 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~----~-~~~~~~~h~~~v~~~~~~-~-~~~~~sgs~Dg~i~vwd~ 85 (327)
.|.+.|++++|+|+ +.+|++++.|+.|++||+.. . .......|..+|.+++|+ + +..+++++.|+.|++||+
T Consensus 65 ~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 65 QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 46789999999995 57899999999999999987 2 344555799999999996 4 789999999999999999
Q ss_pred CCCc------ee-e---eecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCC-------CcEEE--Ee
Q psy11885 86 NTQT------ET-V---IGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQP-------DKVFT--MS 145 (327)
Q Consensus 86 ~~~~------~~-~---~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-------~~~~~--~~ 145 (327)
.+.. .. . ...|...|.+++|+|+ +..|++++.|+.|++||+++++++..+..+ ..+.+ ++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 8765 22 1 2468899999999998 789999999999999999999888776543 33444 45
Q ss_pred cCC-CeEEEEeCCC---eEEEEECCCCccceeeecccceeeeEEeEEee-CCCceEEEeecCeEEEEEccCCccccccee
Q psy11885 146 LCG-EKFVVGTAGR---KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKY 220 (327)
Q Consensus 146 ~~~-~~~~~~~~d~---~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 220 (327)
+++ ..+++++.|+ .|++||+++.+...............+++++| ++..+++++.++.+.+|...... ...
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~----~~~ 299 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE----QLS 299 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC----EEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc----cce
Confidence 554 4789999998 99999999764322222102233457888888 77778888888887775444332 122
Q ss_pred eeeeeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeecCc------------------------
Q psy11885 221 AFKCHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQFHR------------------------ 275 (327)
Q Consensus 221 ~~~~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~~~------------------------ 275 (327)
.+..|. .+|.+++|+|++ .+|++++.|+.|++||+.+++.......
T Consensus 300 ~~~~~~---------~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (416)
T 2pm9_A 300 QFPARG---------NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEK 370 (416)
T ss_dssp EEECSS---------SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSC
T ss_pred eecCCC---------CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccc
Confidence 223332 258899999999 8999999999999999887654332211
Q ss_pred -----------CCcceEEEEECCCCCEEEEEEccccccC
Q psy11885 276 -----------YDTGITSLCFSYDGNVLAIACSYNYELE 303 (327)
Q Consensus 276 -----------~~~~v~~l~fspdg~~la~~~~~~~~~~ 303 (327)
+..++.+++|||||++||+++.+.....
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 371 PSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSI 409 (416)
T ss_dssp CCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCC
T ss_pred cccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEE
Confidence 4567889999999999999875544333
No 40
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-32 Score=233.60 Aligned_cols=263 Identities=16% Similarity=0.259 Sum_probs=203.7
Q ss_pred CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885 11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
...|.+.|++++| |+ +.+|++++.||.|++||+.+++. .....|...|.+++|+ ++..+++|+.|+.|++|++...
T Consensus 14 l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp ECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred hhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 4568899999999 74 57899999999999999988875 4455789999999995 7889999999999999998764
Q ss_pred c----eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEE--EEec-CCCeEEEEeCCCeE
Q psy11885 89 T----ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVF--TMSL-CGEKFVVGTAGRKV 160 (327)
Q Consensus 89 ~----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~d~~v 160 (327)
. ...+..|...|.++.| +++.+++++.|+.|++|| .++....+..+ ..+. .+.+ +++.+++++.|+.|
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 167 (313)
T 3odt_A 92 SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI 167 (313)
T ss_dssp TTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCE
Confidence 3 2356789999999999 568999999999999999 55555555543 2333 3444 78899999999999
Q ss_pred EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885 161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 240 (327)
Q Consensus 161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 240 (327)
++||.+... ............++++.+++. +++++.++.+.++....... ...+..|. .+|.+
T Consensus 168 ~i~d~~~~~---~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~----~~~~~~~~---------~~i~~ 230 (313)
T 3odt_A 168 KLWQNDKVI---KTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV----LRTYEGHE---------SFVYC 230 (313)
T ss_dssp EEEETTEEE---EEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE----EEEEECCS---------SCEEE
T ss_pred EEEecCceE---EEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh----hhhhhcCC---------ceEEE
Confidence 999954321 112222333457788888877 78888888877765544321 22222232 25899
Q ss_pred EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885 241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 241 v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
++|+|++ .|++++.||.|++||+.+++.+..+..|..+|++++|+|+|+++ +++.+
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~d 286 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSD 286 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETT
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCC
Confidence 9999999 69999999999999999999998888888899999999999855 56643
No 41
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.2e-33 Score=245.09 Aligned_cols=258 Identities=15% Similarity=0.256 Sum_probs=188.5
Q ss_pred CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE---EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885 11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL---RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN 86 (327)
Q Consensus 11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~ 86 (327)
...|.+.|++++|+|+ +.+|++++.|++|++||...+.. ....+|..+|.+++|+ ++.++++|+.|++|++||++
T Consensus 57 ~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp CSSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred ccccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 3568889999999995 57999999999999999987642 3345799999999995 78899999999999999998
Q ss_pred CCce----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc--eeeeeeCC-CcE--EEEecCCCeEEEEeCC
Q psy11885 87 TQTE----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR--CVGNYTQP-DKV--FTMSLCGEKFVVGTAG 157 (327)
Q Consensus 87 ~~~~----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~--~~~~~~~~-~~~--~~~~~~~~~~~~~~~d 157 (327)
.... ..+..|...|.+++|+|++++|++|+.|++|++||+++++ +...+..+ ..+ ++++++++.|++++.|
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 7542 2456899999999999999999999999999999998775 33445443 234 4566778899999999
Q ss_pred CeEEEEECCCCccce--------------eeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeee
Q psy11885 158 RKVCIWDLRNMGYIM--------------QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFK 223 (327)
Q Consensus 158 ~~v~iwD~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 223 (327)
++|++||........ .............+++++++..+++++.++.+.++..+...........+.
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 999999974322100 000011122346778888888899999999988877654432222222222
Q ss_pred eeeeccCCeeeEEEeeEEEEecCC-CeEEEecCCCeEEEEeCCCceeeeec
Q psy11885 224 CHRIKEDGIEKIYPVNAISFHQEY-NTFATGGSDGYVNIWDGFNKKRLCQF 273 (327)
Q Consensus 224 ~h~~~~~~~~~~~~v~~v~~spd~-~~lasgs~dg~i~iWd~~~~~~~~~~ 273 (327)
.|... .|...|++++|+|++ .+|||||.||+|++|+..+++.+...
T Consensus 296 ~~~~~----~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 296 AHLHQ----AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEETT----SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred eeecc----cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 22211 122369999999998 48999999999999999887766544
No 42
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-32 Score=239.20 Aligned_cols=241 Identities=15% Similarity=0.197 Sum_probs=189.0
Q ss_pred EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q psy11885 51 RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS 128 (327)
Q Consensus 51 ~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~ 128 (327)
..+.+|.+.|.+++|+ ++..+++|+.||+|++||++++.. ..+..|..+|.+++|++++++|++|+.|++|++||+++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 3455799999999995 788999999999999999988765 45678999999999999999999999999999999999
Q ss_pred CceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeC-CCceEEEeecCeE
Q psy11885 129 SRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPN-KQGYVLSSIEGRA 204 (327)
Q Consensus 129 ~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 204 (327)
++++..+..+. .+ +++++++..+++++.|++|++||+++........ ........+++++|. +..+++++.++.+
T Consensus 87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE-CCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh-cccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99888877543 34 4566678899999999999999998754322221 122234578888884 5667888888888
Q ss_pred EEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec--CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEE
Q psy11885 205 AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS 282 (327)
Q Consensus 205 ~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp--d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~ 282 (327)
.+|........ ..+..+ +...+..++|+| ++++|++|+.|++|++||+.+++.+..+.+|...|.+
T Consensus 166 ~iwd~~~~~~~----~~~~~~--------~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~ 233 (304)
T 2ynn_A 166 KVWSLGQSTPN----FTLTTG--------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233 (304)
T ss_dssp EEEETTCSSCS----EEEECC--------CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred EEEECCCCCcc----ceeccC--------CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE
Confidence 87655332211 111111 001467788876 7789999999999999999999999999999999999
Q ss_pred EEECCCCCEEEEEEccccccCC
Q psy11885 283 LCFSYDGNVLAIACSYNYELET 304 (327)
Q Consensus 283 l~fspdg~~la~~~~~~~~~~~ 304 (327)
++|+|++++||+|+.++....+
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIW 255 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEE
Confidence 9999999999999886554433
No 43
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-33 Score=252.70 Aligned_cols=237 Identities=18% Similarity=0.241 Sum_probs=189.8
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|+ +.+|++|+.|++|++||+.+++.. ...+|...|.+++|+ ++.++++|+.|++|++||++++.
T Consensus 147 ~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~ 225 (410)
T 1vyh_C 147 KGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225 (410)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred eccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 347789999999995 579999999999999999988754 445799999999995 77899999999999999999876
Q ss_pred e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEE--EecC------------------
Q psy11885 90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFT--MSLC------------------ 147 (327)
Q Consensus 90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~--~~~~------------------ 147 (327)
. ..+.+|...|.++.++++++.|++|+.|++|++||++++++...+..+. .+.+ +++.
T Consensus 226 ~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 5 4577899999999999999999999999999999999998887775433 3434 3332
Q ss_pred --CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeee
Q psy11885 148 --GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCH 225 (327)
Q Consensus 148 --~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h 225 (327)
+..+++|+.|++|++||++++..+..... ......++.++|++..+++++.++.+.+|.+.... ....+..|
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~----~~~~~~~h 379 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----CMKTLNAH 379 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC----CCEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eEEEEcCC
Confidence 45799999999999999998764433222 22345778899998888999888888875543322 12223333
Q ss_pred eeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeC
Q psy11885 226 RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG 264 (327)
Q Consensus 226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~ 264 (327)
. ..|.+++|+|++.+||+||.||+|+||+.
T Consensus 380 ~---------~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 380 E---------HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp S---------SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred C---------CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 2 25899999999999999999999999985
No 44
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=241.63 Aligned_cols=237 Identities=16% Similarity=0.199 Sum_probs=193.4
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|...|++++|+|+ +.++++++.|++|++||+.+++.. ....|...+.+++|+ ++.++++|+.|+.|++||++++.
T Consensus 77 ~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 77 EGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp CCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred ccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence 457789999999995 579999999999999999998854 444677888999995 78899999999999999999876
Q ss_pred ee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885 90 ET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGEKFVVGTAGRKVCIWDL 165 (327)
Q Consensus 90 ~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~v~iwD~ 165 (327)
.. .+..|...|.+++|+|++++|++|+.|+.|++||+++++++..+..+ ...+++++++..+++++.|+.|++||+
T Consensus 156 ~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~ 235 (321)
T 3ow8_A 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235 (321)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEET
T ss_pred eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEEC
Confidence 54 46678889999999999999999999999999999999988877643 345667788889999999999999999
Q ss_pred CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885 166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245 (327)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp 245 (327)
++.+...... .......+++++|++..+++++.++.+.+|....... ...+..|. .+|.+++|+|
T Consensus 236 ~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~h~---------~~v~~v~~s~ 300 (321)
T 3ow8_A 236 QHANLAGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC----VHTFFDHQ---------DQVWGVKYNG 300 (321)
T ss_dssp TTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCS---------SCEEEEEECT
T ss_pred CCcceeEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE----EEEEcCCC---------CcEEEEEECC
Confidence 8765432221 1223357788999988899999999988866554322 12222232 2589999999
Q ss_pred CCCeEEEecCCCeEEEEeC
Q psy11885 246 EYNTFATGGSDGYVNIWDG 264 (327)
Q Consensus 246 d~~~lasgs~dg~i~iWd~ 264 (327)
++++|++++.||+|+|||.
T Consensus 301 ~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 301 NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TSSEEEEEETTCCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeC
Confidence 9999999999999999995
No 45
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-32 Score=244.82 Aligned_cols=272 Identities=12% Similarity=0.080 Sum_probs=206.1
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--E-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--L-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
.|++.|++++|+|+ +.+|++++.|+.|++||+.+++ . .....|...|.+++|+ ++..+++++.|+.|++||++++
T Consensus 6 ~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 6 FLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp SCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred ccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 37789999999995 5799999999999999999985 3 4445799999999995 7889999999999999999877
Q ss_pred cee---eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce---eeeeeC--CCcE--EEEecCCCeEEEEeCCC
Q psy11885 89 TET---VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC---VGNYTQ--PDKV--FTMSLCGEKFVVGTAGR 158 (327)
Q Consensus 89 ~~~---~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~---~~~~~~--~~~~--~~~~~~~~~~~~~~~d~ 158 (327)
... .+..|...|.+++|+|+++.|++++.|+.|++||++.++. ...+.. ...+ +.++++++.+++++.|+
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 532 3467899999999999999999999999999999988763 222221 2334 45566788999999999
Q ss_pred eEEEEECCC------------------CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee
Q psy11885 159 KVCIWDLRN------------------MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY 220 (327)
Q Consensus 159 ~v~iwD~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 220 (327)
.|++||++. .+.+... ........++.++|+++.+++++.++.+.+|....... ..
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~ 238 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA----VA 238 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE----EE
T ss_pred CEEEEEcccccccccccccccccccchhhheEec--CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce----eE
Confidence 999999752 2211111 11223457788889888888888888888766544322 12
Q ss_pred eeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC--cee-----------------------------
Q psy11885 221 AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN--KKR----------------------------- 269 (327)
Q Consensus 221 ~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~--~~~----------------------------- 269 (327)
.+..|. .++.+++|+|++.+|++| .|+.|++|++.+ ++.
T Consensus 239 ~~~~~~---------~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 239 TLASET---------LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp EEECSS---------CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred EEccCC---------CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 222221 258899999999988888 899999999877 421
Q ss_pred ---e------eec-CcCCcceEEEEEC-CCC---CEEEEEEccccc
Q psy11885 270 ---L------CQF-HRYDTGITSLCFS-YDG---NVLAIACSYNYE 301 (327)
Q Consensus 270 ---~------~~~-~~~~~~v~~l~fs-pdg---~~la~~~~~~~~ 301 (327)
. ..+ .+|..+|++++|+ ++| ++||+++.++..
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i 354 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEE
T ss_pred cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCce
Confidence 0 223 3788899999965 777 999999865443
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.4e-33 Score=250.57 Aligned_cols=270 Identities=13% Similarity=0.151 Sum_probs=203.5
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-eee
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TVI 93 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~~ 93 (327)
.+....|+|+ +.+|++++.|+.|++||+.+++..... .|...|.+++|+ ++..+++|+.|++|++||++++.. ..+
T Consensus 99 ~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 99 YTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp EEEEEEECSS-SCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred ceEEEEEecC-CCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 3445577885 578999999999999999998876654 799999999995 778999999999999999987754 456
Q ss_pred ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC----CcEE-----------------------EEec
Q psy11885 94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP----DKVF-----------------------TMSL 146 (327)
Q Consensus 94 ~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~----~~~~-----------------------~~~~ 146 (327)
..|...|.+++|+|+++.|++++.|++|++||+++++++..+..+ ..+. .+++
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 789999999999999999999999999999999999888776531 1122 2234
Q ss_pred CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeee
Q psy11885 147 CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCH 225 (327)
Q Consensus 147 ~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h 225 (327)
++..+++++.|+.|++||+++.+.+.... ........+++++|++. .+++++.++.+.+|....... ....+..|
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~ 333 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---PVGEFLIN 333 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEEES
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---chhhhhcc
Confidence 57789999999999999999876543322 22233467888999887 777888888888765544321 11222221
Q ss_pred eeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee---------eeecCcCCcceEEEEECCCCC---EEE
Q psy11885 226 RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR---------LCQFHRYDTGITSLCFSYDGN---VLA 293 (327)
Q Consensus 226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~---------~~~~~~~~~~v~~l~fspdg~---~la 293 (327)
.. .++.++. .|++++|++++.|++|++|++.+.+. ...+..+...|.+++|+||++ .|+
T Consensus 334 ~~--------~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~ 404 (420)
T 3vl1_A 334 EG--------TPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL 404 (420)
T ss_dssp TT--------SCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEE
T ss_pred CC--------CCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEE
Confidence 11 1467774 46788999999999999999876322 223446777899999999999 555
Q ss_pred EEEcccc
Q psy11885 294 IACSYNY 300 (327)
Q Consensus 294 ~~~~~~~ 300 (327)
+.+.++.
T Consensus 405 a~g~~g~ 411 (420)
T 3vl1_A 405 EVGKNNF 411 (420)
T ss_dssp EEETTTE
T ss_pred EEcCCce
Confidence 5555443
No 47
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=255.45 Aligned_cols=288 Identities=14% Similarity=0.103 Sum_probs=204.7
Q ss_pred eecCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC---Ce---EEEEecCCCceeeEEEe-CCceEEEEecCCcE
Q psy11885 8 YSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN---NN---LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTL 80 (327)
Q Consensus 8 ~~~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~---~~---~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i 80 (327)
..+...|.+.|++++|+|.++.+|++|+.|++|++||+.+ +. ....+.|..+|.+++|+ ++..+++|+.|++|
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 135 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQI 135 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 3444668899999999993357999999999999999876 43 23445799999999995 67899999999999
Q ss_pred EEEEcC---CCcee-eee----------c--CCccEEEEE--EeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC---CC
Q psy11885 81 KMFDFN---TQTET-VIG----------T--HDQPIRAVE--YSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ---PD 139 (327)
Q Consensus 81 ~vwd~~---~~~~~-~~~----------~--h~~~V~~l~--~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~ 139 (327)
++||++ .+... ... . +...+.++. ++++++.|++|+.|++|++||+++++++..+.. ..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 999995 33221 111 1 455667766 557899999999999999999999999888765 23
Q ss_pred cE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEee----CCCceEEEeecCeEEEEEccCCc
Q psy11885 140 KV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP----NKQGYVLSSIEGRAAVEYLDTGP 213 (327)
Q Consensus 140 ~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~ 213 (327)
.+ +++++++..+++++.|+.|++||+++.+.+.... ........++.+.| ++..+++++.++.+.+|....+.
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWS-FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEB-CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEe-cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 34 4456678899999999999999999865433221 11223456665554 33355666666666665554333
Q ss_pred ccccceeeeeeeee-------cc----------CCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-
Q psy11885 214 EMQKMKYAFKCHRI-------KE----------DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR- 275 (327)
Q Consensus 214 ~~~~~~~~~~~h~~-------~~----------~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~- 275 (327)
... .+..|.. .. .+..+..+|.+++|+ ++++|++|+.|+.|++||+.+++.+..+.+
T Consensus 295 ~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 295 CQY----AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp EEE----EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred EEE----EEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 211 1111110 00 000123358899999 778999999999999999998877666554
Q ss_pred ------------------------------------CCcceEEEEECCC--CCEEEEEEccccc
Q psy11885 276 ------------------------------------YDTGITSLCFSYD--GNVLAIACSYNYE 301 (327)
Q Consensus 276 ------------------------------------~~~~v~~l~fspd--g~~la~~~~~~~~ 301 (327)
|...|++++|+++ +.+|++|+.++..
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I 433 (437)
T 3gre_A 370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLI 433 (437)
T ss_dssp --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceE
Confidence 6778999999998 7788888766543
No 48
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-34 Score=257.23 Aligned_cols=246 Identities=13% Similarity=0.093 Sum_probs=180.0
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC--eEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN--NLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT 87 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~--~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~ 87 (327)
..+.+.|++++|+|+ +.+|++++.|+.|++||+.++ +.. ....|..+|.+++|+ ++.++++|+.|++|++||+.+
T Consensus 8 ~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred ecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 335568999999995 579999999999999999987 433 344699999999995 778999999999999999988
Q ss_pred Cc----eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc---eeeeeeC--CCcE--EEEecCCCeEEEEeC
Q psy11885 88 QT----ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR---CVGNYTQ--PDKV--FTMSLCGEKFVVGTA 156 (327)
Q Consensus 88 ~~----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~---~~~~~~~--~~~~--~~~~~~~~~~~~~~~ 156 (327)
+. ...+..|...|.+++|+|+++.|++++.|++|++||+++++ +...+.. ...+ +.+++++..+++++.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 76 34566899999999999999999999999999999999876 3455543 3334 445667789999999
Q ss_pred CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885 157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236 (327)
Q Consensus 157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 236 (327)
|+.|++||++..+........ + +............+ .| ..
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~------------~------------------~~~~~~~~~~~~~~-~~---------~~ 206 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEAS------------V------------------WGSRLPFNTVCAEY-PS---------GG 206 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSC------------S------------------SCSCCCEEEEEECC-CC---------SS
T ss_pred CCEEEEEEEEecccCCCcccc------------c------------------cccccchhhhhhcc-cC---------Cc
Confidence 999999999754311000000 0 00000000000011 11 12
Q ss_pred EeeEEEEecCCCeEEEecCCCeEEEEeCCCcee----eeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR----LCQFHRYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~----~~~~~~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
+|.+++|+|++++|++|+.||+|++||+.+++. +..+..|..+|.+++|+|||++|++++.+
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence 588999999999999999999999999998877 77788898899999999999999988654
No 49
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.9e-32 Score=265.26 Aligned_cols=273 Identities=17% Similarity=0.239 Sum_probs=215.3
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|+ +.+|++++.||.|+|||+.+++.. ....|..+|.+++|+ ++..+++|+.||.|++||+.++.
T Consensus 10 ~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp EEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred ecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 446789999999995 579999999999999999998854 445699999999995 78899999999999999998876
Q ss_pred e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC-ceeeeeeCC-CcEE--EEec-CCCeEEEEeCCCeEEEE
Q psy11885 90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS-RCVGNYTQP-DKVF--TMSL-CGEKFVVGTAGRKVCIW 163 (327)
Q Consensus 90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~-~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~d~~v~iw 163 (327)
. ..+..|...|.+++|+|+++.|++++.|++|++||++++ .+...+..+ ..+. .+++ ++..+++++.|+.|++|
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw 168 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 5 456789999999999999999999999999999999886 555555543 3344 4555 56789999999999999
Q ss_pred ECCCCccceeeecccceeeeEEeEEee--CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885 164 DLRNMGYIMQRRESSLKFQTRCIKCFP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI 241 (327)
Q Consensus 164 D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 241 (327)
|+++.......... ......++.++| ++..+++++.++.+.+|....... ...+..|. .+|.++
T Consensus 169 d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~---------~~v~~~ 234 (814)
T 3mkq_A 169 SLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC----VATLEGHM---------SNVSFA 234 (814)
T ss_dssp ETTCSSCSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE----EEEEECCS---------SCEEEE
T ss_pred ECCCCcceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE----EEEEcCCC---------CCEEEE
Confidence 99876543222211 112346677887 667778888888777755443321 22222222 258899
Q ss_pred EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC--EEEEEEccc
Q psy11885 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN--VLAIACSYN 299 (327)
Q Consensus 242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~--~la~~~~~~ 299 (327)
+|+|++++|++|+.||.|++||..+++.+..+..+...+++++|+|+|+ ++++++...
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 294 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCC
Confidence 9999999999999999999999999998888888888999999999998 577665543
No 50
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.7e-32 Score=241.88 Aligned_cols=236 Identities=17% Similarity=0.296 Sum_probs=187.0
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-------eEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-------NLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF 85 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~ 85 (327)
|...|.+++|+|+ +.++++++.|+.+++|++... .......|...|.+++|+ ++..+++++.|++|++||+
T Consensus 105 ~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~ 183 (354)
T 2pbi_B 105 PCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV 183 (354)
T ss_dssp SSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeC
Confidence 5568999999995 579999999999999998643 123445799999999995 6778999999999999999
Q ss_pred CCCce-eeeecCCccEEEEEEeC--CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCe
Q psy11885 86 NTQTE-TVIGTHDQPIRAVEYSD--EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRK 159 (327)
Q Consensus 86 ~~~~~-~~~~~h~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~ 159 (327)
+++.. ..+.+|...|.+++++| +++.|++|+.|++|++||+++++++..+..+. .+ +.+++++..+++++.|++
T Consensus 184 ~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 184 ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp TTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence 98765 45778999999999987 56899999999999999999999888876533 34 456667889999999999
Q ss_pred EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885 160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN 239 (327)
Q Consensus 160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~ 239 (327)
|++||+++.+.+.............++.++|++..+++++.++.+.+|....+.. ...+..|. .+|.
T Consensus 264 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~----~~~l~~h~---------~~v~ 330 (354)
T 2pbi_B 264 CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR----VSILFGHE---------NRVS 330 (354)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE----EEEECCCS---------SCEE
T ss_pred EEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce----EEEEECCC---------CcEE
Confidence 9999999765432222222223456788889988888888888888866543321 11222332 3689
Q ss_pred EEEEecCCCeEEEecCCCeEEEEe
Q psy11885 240 AISFHQEYNTFATGGSDGYVNIWD 263 (327)
Q Consensus 240 ~v~~spd~~~lasgs~dg~i~iWd 263 (327)
+++|+|++++||+|+.|++|+||+
T Consensus 331 ~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 331 TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999996
No 51
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=232.24 Aligned_cols=270 Identities=13% Similarity=0.147 Sum_probs=194.6
Q ss_pred eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe---cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee-e
Q psy11885 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY---AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET-V 92 (327)
Q Consensus 18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~-~ 92 (327)
.++|+||++ + +||+ +.|++|+|||++++++.... .|...|.+++|+ ++.++++|+.|++|++||+++++.. .
T Consensus 28 ~~~l~WS~~-~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSG-N-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTT-S-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCC-C-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 578999984 3 6665 46999999999999864433 477789999995 7889999999999999999988753 5
Q ss_pred eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885 93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDLRNM 168 (327)
Q Consensus 93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~~ 168 (327)
+.+|...+.++.+ ++..+++++.++.+++|+..... .+..+..+. ....+.+.+..+++++.|+.|++||+++.
T Consensus 105 ~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 105 MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 6788888776654 55899999999999999988754 334444322 23445667889999999999999999876
Q ss_pred ccceee--ecccceeeeEEeEEeeCCCceE-EEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885 169 GYIMQR--RESSLKFQTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245 (327)
Q Consensus 169 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp 245 (327)
+..... ..........++.+.+....++ +++......+..|+........ . ..+ ...+..+.|+|
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~--~-~~~---------~~~v~~~~~~~ 250 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS--A-VDA---------HSQVCSILWSP 250 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE--E-EEC---------SSCEEEEEEET
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc--c-ccc---------eeeeeeeeecc
Confidence 532111 1111222335566666554443 3343333344445543221110 0 111 12477899999
Q ss_pred CCCeEEEe--cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885 246 EYNTFATG--GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET 304 (327)
Q Consensus 246 d~~~lasg--s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~ 304 (327)
+++.++++ +.|++|+|||+.+++.+..+.+|..+|++|+|||||++||+|+.++....+
T Consensus 251 ~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 251 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 99988764 479999999999999999999999999999999999999999877655443
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.7e-32 Score=237.45 Aligned_cols=250 Identities=18% Similarity=0.297 Sum_probs=181.9
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|...|++++|+|+ +.+|++++.|++|++||+.+++. ....+|...|.+++|+ ++.++++|+.|++|++||+....
T Consensus 73 ~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~ 151 (343)
T 2xzm_R 73 TGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151 (343)
T ss_dssp CCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE
T ss_pred ccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc
Confidence 457789999999995 57999999999999999998875 4455799999999995 78899999999999999997543
Q ss_pred eeee---ecCCccEEEEEEeCCC----------CEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEE
Q psy11885 90 ETVI---GTHDQPIRAVEYSDEV----------NCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVV 153 (327)
Q Consensus 90 ~~~~---~~h~~~V~~l~~~~~~----------~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~ 153 (327)
.... ..|...|.+++|+|++ .++++++.|++|++||. ..+....+..+ ..+ +++++++..|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 3332 2688899999999987 78999999999999994 44555555443 233 456677889999
Q ss_pred EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec--cCC
Q psy11885 154 GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK--EDG 231 (327)
Q Consensus 154 ~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~--~~~ 231 (327)
++.|+.|++||+++.......... .....+++++|++.. ++++.++.+.+|......... ...+..+... ...
T Consensus 231 gs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~-la~~~d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQW-VAVGTDQGVKIFNLMTQSKAP--VCTIEAEPITKAEGQ 305 (343)
T ss_dssp EETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCE-EEEEESSCEEEEESSSCCSCS--EEECCCCSGGGBTTB
T ss_pred EcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCE-EEEECCCCEEEEEeCCCCCCc--eEEeecCcchhhhhh
Confidence 999999999999654332221111 123577888888654 455567777776554332211 0011100000 000
Q ss_pred eeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce
Q psy11885 232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK 268 (327)
Q Consensus 232 ~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~ 268 (327)
.++...+.+++|+|++++||+|+.||+|++|++.++.
T Consensus 306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 0223358899999999999999999999999987653
No 53
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-31 Score=234.32 Aligned_cols=237 Identities=14% Similarity=0.176 Sum_probs=181.5
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----E-EEEecCCCceeeEEEeC---CceEEEEecCCcEEEE
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----L-RLKYAHSDPVLDCCFQD---AVHSFSGGLDCTLKMF 83 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~-~~~~~h~~~v~~~~~~~---~~~~~sgs~Dg~i~vw 83 (327)
..|.+.|++++|+|+ +.+|++++.|+.|++||+.++. . .....|..+|.+++|++ +..+++|+.|++|++|
T Consensus 8 ~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp CCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred cccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 457889999999995 5799999999999999998752 2 33447999999999963 8899999999999999
Q ss_pred EcCCCc----------eeeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCceeeeee--------------C
Q psy11885 84 DFNTQT----------ETVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRCVGNYT--------------Q 137 (327)
Q Consensus 84 d~~~~~----------~~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~~~~~~--------------~ 137 (327)
|++++. ...+..|...|.+++|+|+ ++.+++++.|+.|++||+++++.+..+. .
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 998753 2345679999999999999 9999999999999999999887654432 1
Q ss_pred CC--cEEEEecC---CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCC
Q psy11885 138 PD--KVFTMSLC---GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG 212 (327)
Q Consensus 138 ~~--~~~~~~~~---~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 212 (327)
.. ..+.+.+. +..+++++.++.+.+|+.........
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 207 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA--------------------------------------- 207 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE---------------------------------------
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee---------------------------------------
Confidence 11 23344443 77899999999987777654321000
Q ss_pred cccccceeeeeeeeeccCCeeeEEEeeEEEEecCC----CeEEEecCCCeEEEEeCCCc---------------------
Q psy11885 213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY----NTFATGGSDGYVNIWDGFNK--------------------- 267 (327)
Q Consensus 213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~----~~lasgs~dg~i~iWd~~~~--------------------- 267 (327)
..+..|. .+|.+++|+|++ ++|++|+.||.|++||+.++
T Consensus 208 -------~~~~~h~---------~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (351)
T 3f3f_A 208 -------AKLPGHK---------SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD 271 (351)
T ss_dssp -------EECCCCC---------SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------
T ss_pred -------eecCCCC---------cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcc
Confidence 0000111 147788888887 78888888888888887654
Q ss_pred -------------------------eeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885 268 -------------------------KRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET 304 (327)
Q Consensus 268 -------------------------~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~ 304 (327)
+.+..+.+|...|++++|+|+|++||+++.++....+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp -------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred cccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 5566778898999999999999999999866544443
No 54
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.1e-32 Score=242.79 Aligned_cols=239 Identities=19% Similarity=0.201 Sum_probs=174.3
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-----EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-----LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN 86 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~ 86 (327)
.|++.|++++|+|+ + .+++++.||+|+|||+.+++.. ...+|...|.+++|+ ++.++++|+.|++|++||++
T Consensus 92 ~~~~~V~~~~~s~d-~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 92 QTEAGVTDVAWVSE-K-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp ECSSCEEEEEEETT-T-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEEcCC-C-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 46778999999995 3 4667888999999999887632 233689999999995 78899999999999999999
Q ss_pred CCcee-eeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCCCceeeeeeC---CCcEEE--EecC-CCeEEEEeCCC
Q psy11885 87 TQTET-VIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRSSRCVGNYTQ---PDKVFT--MSLC-GEKFVVGTAGR 158 (327)
Q Consensus 87 ~~~~~-~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~~~d~ 158 (327)
++... .+..|...|.+++|++++. .+++++.|++|++||++++++...+.. ...+.+ +++. +..+++++.|+
T Consensus 170 ~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 170 QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 87653 5678999999999999874 789999999999999999887665432 223444 4444 45688999999
Q ss_pred eEEEEECCCCccceeeecccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885 159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP 237 (327)
Q Consensus 159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 237 (327)
.|++||+++.+.+..... ......+++++|++. .+++++.++.+.+|....+... ....|. .+
T Consensus 250 ~i~~wd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~-----~~~~H~---------~~ 313 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAV--HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF-----RDLSHR---------DF 313 (357)
T ss_dssp CEEEEESSCGGGCEEECC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE-----EECCCS---------SC
T ss_pred ceeEEECCCCcEeEEEec--cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe-----EECCCC---------CC
Confidence 999999998765433222 223457888888875 4566777888777544433211 111232 36
Q ss_pred eeEEEEec-CCCeEEEecCCCeEEEEeCCCcee
Q psy11885 238 VNAISFHQ-EYNTFATGGSDGYVNIWDGFNKKR 269 (327)
Q Consensus 238 v~~v~~sp-d~~~lasgs~dg~i~iWd~~~~~~ 269 (327)
|++++|+| ++++|||||.||+|++|++.+...
T Consensus 314 V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 314 VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 89999999 799999999999999999865433
No 55
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.9e-31 Score=238.01 Aligned_cols=284 Identities=14% Similarity=0.150 Sum_probs=211.0
Q ss_pred CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--------------cCCCceeeEEEe--CCceEEEE
Q psy11885 11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--------------AHSDPVLDCCFQ--DAVHSFSG 74 (327)
Q Consensus 11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------------~h~~~v~~~~~~--~~~~~~sg 74 (327)
...|.+.|++++|+|.++.+|++++.||.|++||+.+++..... .|...|.+++|+ ++..++++
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 34588999999999933579999999999999999876532221 388999999995 56689999
Q ss_pred ecCCcEEEEEcCCCceeeeecCCccEEEEEEeCC---CCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEE--EEecCC
Q psy11885 75 GLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDE---VNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVF--TMSLCG 148 (327)
Q Consensus 75 s~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~--~~~~~~ 148 (327)
+.|+.|++||+.++.......+...+.++.+++. +..+++++.|+.|++||+++++++..+..+ ..+. .+++.+
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 198 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY 198 (408)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred eCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence 9999999999998876655567888999999884 459999999999999999999888777643 3344 455566
Q ss_pred C-eEEEEeCCCeEEEEECCCCccceeeec--------------ccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCc
Q psy11885 149 E-KFVVGTAGRKVCIWDLRNMGYIMQRRE--------------SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP 213 (327)
Q Consensus 149 ~-~~~~~~~d~~v~iwD~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 213 (327)
. .+++++.|+.|++||+++......... ........+++++|++..+++++.++.+.+|......
T Consensus 199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence 6 488999999999999987642211110 1122345788899988888999989988886665443
Q ss_pred ccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEE
Q psy11885 214 EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293 (327)
Q Consensus 214 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la 293 (327)
...... .+...... ..+........+..+++++.|+.|++||+.+++.+..+.+|...|++++|+|+|++||
T Consensus 279 ~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 350 (408)
T 4a11_B 279 NTLVNY----GKVCNNSK----KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY 350 (408)
T ss_dssp BCCCCC----CCCCCCCS----SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred cceecc----cccccccc----ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence 221111 00000000 0111222234456777788899999999999999999999999999999999999999
Q ss_pred EEEcccccc
Q psy11885 294 IACSYNYEL 302 (327)
Q Consensus 294 ~~~~~~~~~ 302 (327)
+++.++...
T Consensus 351 s~~~dg~i~ 359 (408)
T 4a11_B 351 SGSRDCNIL 359 (408)
T ss_dssp EEETTSCEE
T ss_pred EECCCCeEE
Confidence 998765433
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.6e-33 Score=252.17 Aligned_cols=271 Identities=11% Similarity=0.116 Sum_probs=199.5
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeE-EE-eCCceEEEEecCCcEEEEEcCCCceee-
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDC-CF-QDAVHSFSGGLDCTLKMFDFNTQTETV- 92 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~-~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~- 92 (327)
..+++++|+|+ +++|++++.|+.|++||..+++........ .+..+ .| +++..+++|+.|+.|++||++++....
T Consensus 57 ~~~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 57 DAGKGNTFEKV-GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp BCCTTCEEEEE-ETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred ccccceeeeec-CCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee
Confidence 44568999996 578999999999999999887643332222 44444 45 478899999999999999998776644
Q ss_pred eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEEEeCCCeEEEEECCCCc
Q psy11885 93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMG 169 (327)
Q Consensus 93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~ 169 (327)
+..|...|.+++|+|++++|++|+.|++|++||+++++++..+..+ ..+ +.+++++..+++++.|++|++||+++.+
T Consensus 135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 4689999999999999999999999999999999999888877643 333 4566778899999999999999999876
Q ss_pred cceeeeccc-cee---------------------eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885 170 YIMQRRESS-LKF---------------------QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 227 (327)
Q Consensus 170 ~~~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~ 227 (327)
.+....... ... ...+++++|++..+++++.++.+.+|.......... ....|
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~-- 289 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ---LPSKF-- 289 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE---ECCTT--
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE---ccccc--
Confidence 543322110 111 112344556667778888888887765543321111 00111
Q ss_pred ccCCeeeEEEeeEEEEecCCC-eEEEecCCCeEEEEeCCCcee-eeecCc-CCcceEEEEECCCCCEEEEEEccccc
Q psy11885 228 KEDGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDGFNKKR-LCQFHR-YDTGITSLCFSYDGNVLAIACSYNYE 301 (327)
Q Consensus 228 ~~~~~~~~~~v~~v~~spd~~-~lasgs~dg~i~iWd~~~~~~-~~~~~~-~~~~v~~l~fspdg~~la~~~~~~~~ 301 (327)
..+|.+++|+|+++ +|++|+.||.|++||+.+++. +..+.. +..+|.++.| |++++|++++.++..
T Consensus 290 -------~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 290 -------TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSI 358 (420)
T ss_dssp -------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEE
T ss_pred -------CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccE
Confidence 12588999999999 999999999999999988754 556655 4557888855 578899998765433
No 57
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-32 Score=239.45 Aligned_cols=234 Identities=18% Similarity=0.203 Sum_probs=181.2
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC--eE-EEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEEc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN--NL-RLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFDF 85 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~--~~-~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd~ 85 (327)
..|.+.|++++|+|+ +.+|++++.|+.|++||+..+ +. .....|..+|.+++|+ + +.++++|+.|+.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 8 NAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp EECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred cCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 347789999999995 579999999999999999844 33 3344699999999994 4 789999999999999999
Q ss_pred CCCce---eeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCceee--eeeC-CCcE--EEEec---------
Q psy11885 86 NTQTE---TVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRCVG--NYTQ-PDKV--FTMSL--------- 146 (327)
Q Consensus 86 ~~~~~---~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~~~--~~~~-~~~~--~~~~~--------- 146 (327)
+++.. ..+..|...|.+++|+|+ ++.+++++.|+.|++||+++++... .+.. ...+ ..+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence 98752 345679999999999999 9999999999999999998874332 2222 3334 34455
Q ss_pred ----CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee
Q psy11885 147 ----CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF 222 (327)
Q Consensus 147 ----~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 222 (327)
++..+++++.|+.|++||+++..... ... ..+
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------~~~---------------------------------~~~ 202 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTY-----------VLE---------------------------------STL 202 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEE-----------EEE---------------------------------EEE
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCcce-----------eeE---------------------------------EEE
Confidence 46789999999999999987532100 000 000
Q ss_pred eeeeeccCCeeeEEEeeEEEEecC---CCeEEEecCCCeEEEEeCCCce-----eeeecCcCCcceEEEEECCCCCEEEE
Q psy11885 223 KCHRIKEDGIEKIYPVNAISFHQE---YNTFATGGSDGYVNIWDGFNKK-----RLCQFHRYDTGITSLCFSYDGNVLAI 294 (327)
Q Consensus 223 ~~h~~~~~~~~~~~~v~~v~~spd---~~~lasgs~dg~i~iWd~~~~~-----~~~~~~~~~~~v~~l~fspdg~~la~ 294 (327)
..|. .+|.+++|+|+ +++|++++.||.|++||+.++. .+.....+...|++++|+|+|++||+
T Consensus 203 ~~h~---------~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 273 (379)
T 3jrp_A 203 EGHS---------DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 273 (379)
T ss_dssp CCCS---------SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred eccc---------CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence 1111 14789999999 8999999999999999998763 23333457788999999999999999
Q ss_pred EEccc
Q psy11885 295 ACSYN 299 (327)
Q Consensus 295 ~~~~~ 299 (327)
++.++
T Consensus 274 ~~~dg 278 (379)
T 3jrp_A 274 SGGDN 278 (379)
T ss_dssp EESSS
T ss_pred ecCCC
Confidence 98654
No 58
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.8e-31 Score=240.61 Aligned_cols=268 Identities=13% Similarity=0.179 Sum_probs=198.8
Q ss_pred eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe---cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee-e
Q psy11885 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY---AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET-V 92 (327)
Q Consensus 18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~-~ 92 (327)
.+.|+||+ + .+||+| .|++|+|||..++++.... .|...|.+++|+ ++.++++|+.|++|++||+++++.. .
T Consensus 108 ~~~l~wS~-~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 108 LNLVDWSS-G-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp CBCEEECT-T-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ceeEEECC-C-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 57899997 3 366654 5999999999999854433 477789999995 7899999999999999999987653 5
Q ss_pred eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc-eeeeeeCCC---cEEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885 93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR-CVGNYTQPD---KVFTMSLCGEKFVVGTAGRKVCIWDLRNM 168 (327)
Q Consensus 93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iwD~~~~ 168 (327)
+.+|...+.++.++ +..+++|+.|+.+++||.+... .+..+..+. ....+.+.+..+++++.|+.+++||.++.
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 67899999988775 5799999999999999998754 344444432 23456677889999999999999999865
Q ss_pred cccee--eecccceeeeEEeEEeeCCCceE-EEe--ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885 169 GYIMQ--RRESSLKFQTRCIKCFPNKQGYV-LSS--IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 243 (327)
Q Consensus 169 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~ 243 (327)
+.... ...........++++.|....++ +++ .++.+.+ |+..... ....+..| ..+.++.|
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i--wd~~t~~--~~~~~~~~----------~~v~~~~~ 328 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI--WNVCSGA--CLSAVDAH----------SQVCSILW 328 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE--EETTTTE--EEEEEECS----------SCEEEEEE
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE--EeCCccc--cceeeccc----------cceeeeee
Confidence 43211 11112223356777888765544 333 3455555 5443321 11111111 14778999
Q ss_pred ecCCCeEEEec--CCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885 244 HQEYNTFATGG--SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET 304 (327)
Q Consensus 244 spd~~~lasgs--~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~ 304 (327)
+|+++.|++++ .|+.|+|||+.+++.+..+.+|..+|++|+|||||++||+|+.|+....+
T Consensus 329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 329 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 99999988754 79999999999999999999999999999999999999999887655443
No 59
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-31 Score=273.14 Aligned_cols=278 Identities=16% Similarity=0.216 Sum_probs=218.9
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|+ +.+|++|+.||+|++||+.+++.. ....|...|.+++|+ ++.++++|+.|++|++||+.++.
T Consensus 612 ~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ecccccEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence 357889999999995 589999999999999999998854 445799999999995 78899999999999999999876
Q ss_pred ee-eeecCCccEEEEEEeC--CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-c--EEEEecCCCeEEEEeCCCeEEEE
Q psy11885 90 ET-VIGTHDQPIRAVEYSD--EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-K--VFTMSLCGEKFVVGTAGRKVCIW 163 (327)
Q Consensus 90 ~~-~~~~h~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~d~~v~iw 163 (327)
.. .+..|...|.+++|++ ++..+++|+.|+.|++||+++++++..+..+. . ...+++++..+++++.|+.|++|
T Consensus 691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vw 770 (1249)
T 3sfz_A 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770 (1249)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEE
T ss_pred eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEE
Confidence 53 5678999999999999 55689999999999999999999888776533 3 34567778899999999999999
Q ss_pred ECCCCccceeeecc-----------cceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCe
Q psy11885 164 DLRNMGYIMQRRES-----------SLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI 232 (327)
Q Consensus 164 D~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~ 232 (327)
|+++.+........ .......++++++++..+++++ ++.+.++.......... ....|
T Consensus 771 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~---~~~~~------- 839 (1249)
T 3sfz_A 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAE---IHTGH------- 839 (1249)
T ss_dssp EGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEE---EECSS-------
T ss_pred eCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeE---EcCCC-------
Confidence 99876533221110 0111245667778777666654 66666654443321111 11111
Q ss_pred eeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccC
Q psy11885 233 EKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELE 303 (327)
Q Consensus 233 ~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~ 303 (327)
..++.+++|+|+++.+++|+.||.|++||..+++.+..+.+|...|++++|+|+|++|++++.++....
T Consensus 840 --~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~v 908 (1249)
T 3sfz_A 840 --HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908 (1249)
T ss_dssp --SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred --CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEE
Confidence 125889999999999999999999999999999999999999999999999999999999987654443
No 60
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-30 Score=238.01 Aligned_cols=280 Identities=18% Similarity=0.294 Sum_probs=215.6
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
..|.+.|++++|++ .++++|+.|++|++||+.+++... ...|...|.++.+. +..+++|+.|++|++||++++..
T Consensus 156 ~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~ 231 (445)
T 2ovr_B 156 VGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQC 231 (445)
T ss_dssp CCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCE
T ss_pred cCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcE
Confidence 45788999999984 489999999999999999988544 44699999999885 56799999999999999988765
Q ss_pred -eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-CCcEEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885 91 -TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM 168 (327)
Q Consensus 91 -~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~ 168 (327)
..+..|..+|.++.+ +++.+++|+.|+.|++||+++++++..+.. ...+.++.+++..+++++.|+.|++||+++.
T Consensus 232 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCC
Confidence 356789999999998 678999999999999999999998888764 3457778888999999999999999999987
Q ss_pred ccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC
Q psy11885 169 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN 248 (327)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~ 248 (327)
+.+.....+ .....+ +.++++.+++++.++.+.+|....+... ..+..+. .+..+|.+++|+ ++
T Consensus 310 ~~~~~~~~~--~~~v~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~------~~~~~v~~~~~~--~~ 373 (445)
T 2ovr_B 310 NCIHTLTGH--QSLTSG--MELKDNILVSGNADSTVKIWDIKTGQCL----QTLQGPN------KHQSAVTCLQFN--KN 373 (445)
T ss_dssp CEEEEECCC--CSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEE----EEECSTT------SCSSCEEEEEEC--SS
T ss_pred CEEEEEcCC--cccEEE--EEEeCCEEEEEeCCCeEEEEECCCCcEE----EEEccCC------CCCCCEEEEEEC--CC
Confidence 654322211 112233 3345667788888888888665443221 1111110 112358888885 57
Q ss_pred eEEEecCCCeEEEEeCCCceeeeec-----CcCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEcccc
Q psy11885 249 TFATGGSDGYVNIWDGFNKKRLCQF-----HRYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQ 322 (327)
Q Consensus 249 ~lasgs~dg~i~iWd~~~~~~~~~~-----~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (327)
+|++|+.||.|++||+.+++.+..+ ..+...|++++|+|+|.+||+|+.++. +...++++....+
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~---------~~~~l~v~df~~~ 443 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT---------EETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS---------SCCEEEEEECCCC
T ss_pred EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC---------CccEEEEEECCCC
Confidence 9999999999999999999888776 466778999999999999999986654 2334666655543
No 61
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-33 Score=256.20 Aligned_cols=278 Identities=11% Similarity=0.032 Sum_probs=194.8
Q ss_pred CCCCeeEEEEecC-----CCcEEEEEECCCcEEEEECCCCeE------------EEEecCCCceeeEEEeCCceEEEEec
Q psy11885 14 PEDGITAVKFAPN-----SNQFLLASSWDCNVSLYDITNNNL------------RLKYAHSDPVLDCCFQDAVHSFSGGL 76 (327)
Q Consensus 14 ~~~~I~~i~fs~~-----~~~~l~s~~~d~~i~iwd~~~~~~------------~~~~~h~~~v~~~~~~~~~~~~sgs~ 76 (327)
|.+.|++++|+|+ ++.+||+++.|++|+|||+..++. .....|...|.+++|+++..+++|+.
T Consensus 206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~ 285 (524)
T 2j04_B 206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK 285 (524)
T ss_dssp CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEET
T ss_pred cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeC
Confidence 4578999999995 146999999999999999976531 13346889999999976678999999
Q ss_pred CCcEEEEEcCCCc-e-eeeecCCccEEEE--EEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeCC-----CcEEEEec
Q psy11885 77 DCTLKMFDFNTQT-E-TVIGTHDQPIRAV--EYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQP-----DKVFTMSL 146 (327)
Q Consensus 77 Dg~i~vwd~~~~~-~-~~~~~h~~~V~~l--~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-----~~~~~~~~ 146 (327)
||+|++||++++. . ..+..|..+|.+| +|++++ ++|+||+.|++|++||++++++...+..+ ....++++
T Consensus 286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence 9999999998653 2 3467899999999 567887 89999999999999999988776554321 23467788
Q ss_pred CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885 147 CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR 226 (327)
Q Consensus 147 ~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~ 226 (327)
++..+++++.|++|++||+++......... +.....+++++|+++.+++++.++.+.+ |+..... ...++.+.
T Consensus 366 ~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~l--wd~~~~~---~~~~~~~~ 438 (524)
T 2j04_B 366 QIYSYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLII--TNAARRL---LHGIKNSS 438 (524)
T ss_dssp TTTEEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEEC--CBSCSST---TTCC----
T ss_pred CcCeEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEE--EechHhh---ccccccCc
Confidence 888999999999999999998654322222 2234678899999999999999988777 4432211 10000000
Q ss_pred eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC-CceeeeecCcCCcceEEEEECCCCC---EEEEEEcccccc
Q psy11885 227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF-NKKRLCQFHRYDTGITSLCFSYDGN---VLAIACSYNYEL 302 (327)
Q Consensus 227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~-~~~~~~~~~~~~~~v~~l~fspdg~---~la~~~~~~~~~ 302 (327)
...+...+.+++|+|+++.+. ...+ +++|+.. ++..+..+.+|..+|++|+|||+++ .||+|+.++...
T Consensus 439 ----~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vr 511 (524)
T 2j04_B 439 ----ATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLT 511 (524)
T ss_dssp ------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEE
T ss_pred ----cceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEE
Confidence 000111467899999998653 2222 3344432 4666778889999999999999964 899887666555
Q ss_pred CCC
Q psy11885 303 ETP 305 (327)
Q Consensus 303 ~~~ 305 (327)
.+.
T Consensus 512 lw~ 514 (524)
T 2j04_B 512 LEY 514 (524)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 62
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-31 Score=263.36 Aligned_cols=156 Identities=9% Similarity=0.135 Sum_probs=131.6
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET 91 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~ 91 (327)
.|...|++++|+| + ++|++++.|++|++||+.++++...+.|...|.+++|+ ++.++++|+.||+|++||++++...
T Consensus 56 ~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 4677999999999 4 59999999999999999998876666788899999995 7889999999999999999877542
Q ss_pred ------------eeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCC-------------------C
Q psy11885 92 ------------VIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQP-------------------D 139 (327)
Q Consensus 92 ------------~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-------------------~ 139 (327)
.+.+|..+|.+++|+|+ +..+++|+.|++| +||+++++++..+..+ .
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 12468899999999996 5789999999999 9999999887776533 2
Q ss_pred cE--EEEecCCCeEEEEeCCCeEEEEECCCCccc
Q psy11885 140 KV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYI 171 (327)
Q Consensus 140 ~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~ 171 (327)
.+ .++++++..|++++.|++|++||+++++.+
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 34 456677889999999999999999876543
No 63
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.4e-31 Score=247.22 Aligned_cols=285 Identities=14% Similarity=0.131 Sum_probs=207.1
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecCCC---ceeeEEEe-C-CceEEEEecCCcEEEEEc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAHSD---PVLDCCFQ-D-AVHSFSGGLDCTLKMFDF 85 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h~~---~v~~~~~~-~-~~~~~sgs~Dg~i~vwd~ 85 (327)
..|.+.|++++|+|++..++++++.|+.|++||..+++.... ..|.. .|.+++|+ + +.++++++.|+.|++||+
T Consensus 157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 457789999999997545899999999999999999886544 45888 89999995 6 789999999999999999
Q ss_pred CCCceee-e-e---cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-----CcEEEEe-cCCCeEEEE
Q psy11885 86 NTQTETV-I-G---THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-----DKVFTMS-LCGEKFVVG 154 (327)
Q Consensus 86 ~~~~~~~-~-~---~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~ 154 (327)
.+++... + . .|..+|.+++|+ +++.|++++.|+.|++||+++++++..+..+ ..+..+. +++..++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 315 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence 8877643 4 4 899999999999 9999999999999999999999988877654 2333333 268889999
Q ss_pred eCCCeEEEEECCCCccceeeeccc-------------------------------ceeeeEEeEEeeCCCceEEEeecCe
Q psy11885 155 TAGRKVCIWDLRNMGYIMQRRESS-------------------------------LKFQTRCIKCFPNKQGYVLSSIEGR 203 (327)
Q Consensus 155 ~~d~~v~iwD~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (327)
+.|+.|++||+++.+.+.....+. ......++.+ +++..+++++.++.
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDT 394 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTE
T ss_pred ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCC
Confidence 999999999998654322211110 0111223333 33445555555554
Q ss_pred EEEEEccCCccc------------------------------------c-------------------------cce--e
Q psy11885 204 AAVEYLDTGPEM------------------------------------Q-------------------------KMK--Y 220 (327)
Q Consensus 204 ~~i~~~~~~~~~------------------------------------~-------------------------~~~--~ 220 (327)
+.+ |+..... . ... +
T Consensus 395 i~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~ 472 (615)
T 1pgu_A 395 LKV--NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF 472 (615)
T ss_dssp EEE--TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE
T ss_pred EEE--EEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEE
Confidence 443 2211000 0 000 0
Q ss_pred eeeeeeec-cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-CCcceEEEEECC----------C
Q psy11885 221 AFKCHRIK-EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-YDTGITSLCFSY----------D 288 (327)
Q Consensus 221 ~~~~h~~~-~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-~~~~v~~l~fsp----------d 288 (327)
........ ..-..+..+|.+++|+|++++|++|+.||.|++||+.+++.+..+.+ |...|++++||| +
T Consensus 473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~ 552 (615)
T 1pgu_A 473 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552 (615)
T ss_dssp ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred ECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccC
Confidence 00000000 00011233688999999999999999999999999999999988887 888999999999 9
Q ss_pred CCEEEEEEcccc
Q psy11885 289 GNVLAIACSYNY 300 (327)
Q Consensus 289 g~~la~~~~~~~ 300 (327)
+++||+++.++.
T Consensus 553 ~~~l~~~~~dg~ 564 (615)
T 1pgu_A 553 EDLVATGSLDTN 564 (615)
T ss_dssp CCEEEEEETTSC
T ss_pred CCEEEEEcCCCc
Confidence 999999987643
No 64
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-31 Score=235.79 Aligned_cols=263 Identities=15% Similarity=0.218 Sum_probs=197.7
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-ee
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-TV 92 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-~~ 92 (327)
.+++++|++ ..+++++.|+.|++||+.+++..... .|...|.+++|+ ++.++++|+.||.|++||++++.. ..
T Consensus 95 ~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 171 (401)
T 4aez_A 95 YLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT 171 (401)
T ss_dssp TCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred eEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE
Confidence 355677775 24777889999999999998854433 378899999995 788999999999999999988765 45
Q ss_pred eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-CceeeeeeCC-CcE--EEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885 93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-SRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKVCIWDLRNM 168 (327)
Q Consensus 93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~ 168 (327)
+..|...|.+++|+ ++.+++|+.|+.|++||++. +..+..+..+ ..+ +.+++++..+++++.|+.|++||+++.
T Consensus 172 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 249 (401)
T 4aez_A 172 MAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 249 (401)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS
T ss_pred ecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC
Confidence 67899999999994 57999999999999999984 4555555543 333 456667889999999999999999986
Q ss_pred ccceeeecccceeeeEEeEEeeCCCceEEEe---ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885 169 GYIMQRRESSLKFQTRCIKCFPNKQGYVLSS---IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245 (327)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp 245 (327)
+....... ......+++++|++..+++.+ .++.+.+|....+... ..+. + ..++.+++|+|
T Consensus 250 ~~~~~~~~--~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~-~---------~~~v~~~~~s~ 313 (401)
T 4aez_A 250 IPKFTKTN--HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVD-A---------GSQVTSLIWSP 313 (401)
T ss_dssp SEEEEECC--CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEE-C---------SSCEEEEEECS
T ss_pred CccEEecC--CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEe-C---------CCcEEEEEECC
Confidence 54432221 223456788888776555543 3666666544433211 1111 1 12588999999
Q ss_pred CCCeEEE--ecCCCeEEEEeCCCceeee--ecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885 246 EYNTFAT--GGSDGYVNIWDGFNKKRLC--QFHRYDTGITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 246 d~~~las--gs~dg~i~iWd~~~~~~~~--~~~~~~~~v~~l~fspdg~~la~~~~~~~ 300 (327)
+++.|++ |+.||.|++||+.+++... .+.+|...|.+++|+|||++||+++.++.
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~ 372 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 9999998 6689999999998865443 45688889999999999999999986543
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=234.06 Aligned_cols=243 Identities=20% Similarity=0.300 Sum_probs=168.9
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC-------CeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN-------NNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMF 83 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-------~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw 83 (327)
.|.+.|++++|+|+ +.+|++++.|++|+|||+.. .+. ....+|...|.+++|+ ++.++++|+.|++|++|
T Consensus 56 ~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iw 134 (330)
T 2hes_X 56 AHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134 (330)
T ss_dssp CCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 38889999999995 57999999999999999853 222 3345799999999995 78899999999999999
Q ss_pred EcCCC-c----eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC--ceeeeeeCC-CcEEEE--ecC--CCeE
Q psy11885 84 DFNTQ-T----ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS--RCVGNYTQP-DKVFTM--SLC--GEKF 151 (327)
Q Consensus 84 d~~~~-~----~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~--~~~~~~~~~-~~~~~~--~~~--~~~~ 151 (327)
|++.. . ...+..|...|.+++|+|++++|++|+.|++|++||++++ +++..+..+ ..+.++ ++. +..+
T Consensus 135 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 214 (330)
T 2hes_X 135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL 214 (330)
T ss_dssp ECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred eccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence 99532 1 1346789999999999999999999999999999998776 566666543 345444 444 4579
Q ss_pred EEEeCCCeEEEEECCCCcc-------ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885 152 VVGTAGRKVCIWDLRNMGY-------IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224 (327)
Q Consensus 152 ~~~~~d~~v~iwD~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 224 (327)
++++.|++|++||++.... ..............++++.+. ..+++++.++.+.+|....+.. .........
T Consensus 215 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~~dg~v~iw~~~~~~~-~~~~~~~~~ 292 (330)
T 2hes_X 215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLIASVGADGVLAVYEEVDGEW-KVFAKRALC 292 (330)
T ss_dssp EEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-SCEEEEETTSCEEEEEEETTEE-EEEEEESCT
T ss_pred EEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-CEEEEEeCCCEEEEEEcCCCce-EEEeccccc
Confidence 9999999999999875321 001111112234566777744 4677788888888865443210 001111111
Q ss_pred eeeccCCeeeEEEeeEEEEec--CCCeEEEecCCCeEEEEeCCC
Q psy11885 225 HRIKEDGIEKIYPVNAISFHQ--EYNTFATGGSDGYVNIWDGFN 266 (327)
Q Consensus 225 h~~~~~~~~~~~~v~~v~~sp--d~~~lasgs~dg~i~iWd~~~ 266 (327)
|.. ..|++++|+| ++++||+||.||+|+|||+.+
T Consensus 293 h~~--------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGV--------YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTT--------SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccc--------ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 211 1488999999 789999999999999999764
No 66
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=255.66 Aligned_cols=265 Identities=10% Similarity=0.074 Sum_probs=183.6
Q ss_pred CCCeeEEEEecCC-C-------cEEEE-------------------EECCCcEEEEECCCCeEE----E-EecCCCceee
Q psy11885 15 EDGITAVKFAPNS-N-------QFLLA-------------------SSWDCNVSLYDITNNNLR----L-KYAHSDPVLD 62 (327)
Q Consensus 15 ~~~I~~i~fs~~~-~-------~~l~s-------------------~~~d~~i~iwd~~~~~~~----~-~~~h~~~v~~ 62 (327)
.+.|.+|+|+|++ + ++||+ ++.|++|+|||+.++++. . ...|.+.|.+
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~ 212 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD 212 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence 4678899999863 1 56665 457889999999876531 2 3356788999
Q ss_pred EEEeC-------CceEEEEecCCcEEEEEcCCCce------------eeeecCCccEEEEEEeCCCCEEEEEECCCeEEE
Q psy11885 63 CCFQD-------AVHSFSGGLDCTLKMFDFNTQTE------------TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKM 123 (327)
Q Consensus 63 ~~~~~-------~~~~~sgs~Dg~i~vwd~~~~~~------------~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~l 123 (327)
++|++ +..++||+.||+|++||+..+.. ..+.+|...|.+++|+++ ..|++|+.||+|++
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~l 291 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAE 291 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEE
Confidence 99964 36899999999999999976531 145678999999999986 48999999999999
Q ss_pred EeCCCCc-eeeeeeCC-CcEEEE----ecCC-CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceE
Q psy11885 124 WDPRSSR-CVGNYTQP-DKVFTM----SLCG-EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYV 196 (327)
Q Consensus 124 wdl~~~~-~~~~~~~~-~~~~~~----~~~~-~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (327)
||+++++ +...+..+ ..+.++ .+++ ..|++++.|++|+|||+++.+.......+.......+++++|+++.++
T Consensus 292 WD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~ 371 (524)
T 2j04_B 292 FDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI 371 (524)
T ss_dssp EETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE
T ss_pred EECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEE
Confidence 9998764 33444433 345544 3345 679999999999999998765432211111001135678999888888
Q ss_pred EEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC
Q psy11885 197 LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY 276 (327)
Q Consensus 197 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~ 276 (327)
+++.++.+.+|...... ....+..|. .+|++++|||++++||+||.||+|++||...+ .+......
T Consensus 372 s~~~d~tv~lwd~~~~~----~~~~l~gH~---------~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~ 437 (524)
T 2j04_B 372 YSDGASSLRAVPSRAAF----AVHPLVSRE---------TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNS 437 (524)
T ss_dssp EECSSSEEEEEETTCTT----CCEEEEECS---------SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC---
T ss_pred EeCCCCcEEEEECcccc----cceeeecCC---------CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccC
Confidence 88877777664433221 112233333 36899999999999999999999999997643 22222111
Q ss_pred -----CcceEEEEECCCCCEEEE
Q psy11885 277 -----DTGITSLCFSYDGNVLAI 294 (327)
Q Consensus 277 -----~~~v~~l~fspdg~~la~ 294 (327)
...+++++|||+|+.+..
T Consensus 438 ~~~~~~~~v~~v~~sp~g~~~~~ 460 (524)
T 2j04_B 438 SATQKSLRLWKWDYSIKDDKYRI 460 (524)
T ss_dssp ---CCCCEEEECBCCSSSCEEEE
T ss_pred ccceeeeEEEEeccCCCCCeEEc
Confidence 115789999999997643
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-31 Score=236.90 Aligned_cols=245 Identities=13% Similarity=0.187 Sum_probs=186.4
Q ss_pred CCCCeeEEEEecCC---CcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCC
Q psy11885 14 PEDGITAVKFAPNS---NQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNT 87 (327)
Q Consensus 14 ~~~~I~~i~fs~~~---~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~ 87 (327)
|.+.|++++|+|+. +.+|++++.|+.|++||+.+++... ...|..+|.+++|+ ++..+++|+.|+.|++||+++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 66889999999963 3689999999999999999888544 44699999999995 678899999999999999988
Q ss_pred Cceee-e---ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee---------------------------
Q psy11885 88 QTETV-I---GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT--------------------------- 136 (327)
Q Consensus 88 ~~~~~-~---~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~--------------------------- 136 (327)
+.... + ..|...|.+++|+|+++.|++++.|+.|++||+++++....+.
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 76543 3 5799999999999999999999999999999999876543322
Q ss_pred --CCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeee------------cccceeeeEEeEEeeC--CCceEEEee
Q psy11885 137 --QPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR------------ESSLKFQTRCIKCFPN--KQGYVLSSI 200 (327)
Q Consensus 137 --~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~~~~~ 200 (327)
....+.++.++++.+++++.|+.|++||+++........ .........++++.++ +..+++++.
T Consensus 228 ~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 228 DIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp SSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred cCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 233445555558899999999999999998764311100 0011112345677888 778888888
Q ss_pred cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885 201 EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF 265 (327)
Q Consensus 201 ~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~ 265 (327)
++.+.+|..............+..|. +..+|.+++|+|++++|++|+.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHK-------CGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTT-------CCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccc-------cCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 88888866655443322222233221 11368999999999999999999999999975
No 68
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.4e-31 Score=236.25 Aligned_cols=237 Identities=23% Similarity=0.328 Sum_probs=179.7
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI 93 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~ 93 (327)
..|++++|+|+ +++|++|+.|++|++||+.+++.. ...+|...|.+++|+ ++..+++|+.|++|++||++++.....
T Consensus 124 ~~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~ 202 (393)
T 1erj_A 124 LYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 202 (393)
T ss_dssp CBEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eeEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence 35999999995 579999999999999999998854 445799999999995 788999999999999999998876554
Q ss_pred ecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeee--------CCCcE--EEEecCCCeEEEEeCCCeEEE
Q psy11885 94 GTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYT--------QPDKV--FTMSLCGEKFVVGTAGRKVCI 162 (327)
Q Consensus 94 ~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~d~~v~i 162 (327)
..+...+.+++++| ++++|++|+.|++|++||+++++++..+. +...+ +.+++++..+++++.|++|++
T Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 203 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 55677899999998 89999999999999999999988776652 12234 455667889999999999999
Q ss_pred EECCCCccceee----------ecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCe
Q psy11885 163 WDLRNMGYIMQR----------RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI 232 (327)
Q Consensus 163 wD~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~ 232 (327)
||+++....... ..........++++.+++..+++++.++.+.+|....+.. ...+..|.
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~----~~~l~~h~------ 352 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP----LLMLQGHR------ 352 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE----EEEEECCS------
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE----EEEECCCC------
Confidence 999864321100 0001112245677888888888888888887765544322 22333343
Q ss_pred eeEEEeeEEEEec------CCCeEEEecCCCeEEEEeCCC
Q psy11885 233 EKIYPVNAISFHQ------EYNTFATGGSDGYVNIWDGFN 266 (327)
Q Consensus 233 ~~~~~v~~v~~sp------d~~~lasgs~dg~i~iWd~~~ 266 (327)
..|.+++|+| ++++|||||.||+|+||++.+
T Consensus 353 ---~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 353 ---NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ---SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ---CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 2578888875 688999999999999999754
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-30 Score=237.25 Aligned_cols=263 Identities=19% Similarity=0.295 Sum_probs=205.3
Q ss_pred CCCC-eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee
Q psy11885 14 PEDG-ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET 91 (327)
Q Consensus 14 ~~~~-I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~ 91 (327)
|.+. +++++|++ .+|++|+.||+|++||+.+++... ..+|..+|.+++|+++..+++|+.||+|++||++++...
T Consensus 120 h~~~v~~~~~~~~---~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~ 196 (464)
T 3v7d_B 120 HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT 196 (464)
T ss_dssp CSSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCcEEEEEECC---CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEE
Confidence 4444 67888763 589999999999999999998654 446999999999986669999999999999999987653
Q ss_pred -eeecCCccEEEEEEe--CCCCEEEEEECCCeEEEEeCCCCceee-----------------------eeeC-CCcEEEE
Q psy11885 92 -VIGTHDQPIRAVEYS--DEVNCILTGSWDTSVKMWDPRSSRCVG-----------------------NYTQ-PDKVFTM 144 (327)
Q Consensus 92 -~~~~h~~~V~~l~~~--~~~~~l~sgs~d~~i~lwdl~~~~~~~-----------------------~~~~-~~~~~~~ 144 (327)
.+..|...|.+++|+ ++++.+++|+.|++|++||+++++... .+.. ...+.++
T Consensus 197 ~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 276 (464)
T 3v7d_B 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276 (464)
T ss_dssp EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE
T ss_pred EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE
Confidence 566799999999998 577899999999999999998765322 2222 2346677
Q ss_pred ecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885 145 SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224 (327)
Q Consensus 145 ~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 224 (327)
.++++.+++++.|+.|++||+++.+.+..... ......++.+.++++.+++++.++.+.+|....+.. ...+..
T Consensus 277 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~----~~~~~~ 350 (464)
T 3v7d_B 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL----MYTLQG 350 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE----EEEECC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE----EEEEeC
Confidence 88899999999999999999998765433222 223457788899888899999999988866554332 222223
Q ss_pred eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
|. .+|.+++|+ +++|++|+.||+|++||+.+++...... +...+..++|+|++++|++|+.
T Consensus 351 h~---------~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d 411 (464)
T 3v7d_B 351 HT---------ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSE 411 (464)
T ss_dssp CS---------SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEET
T ss_pred CC---------CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEecC
Confidence 32 257888887 5799999999999999999877665553 4556788999999999999873
No 70
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.5e-32 Score=242.71 Aligned_cols=246 Identities=17% Similarity=0.231 Sum_probs=185.7
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--------EEEEecCCCceeeEEEe--CCceEEEEecCCcEEE
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--------LRLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKM 82 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~v 82 (327)
.|...|.+++|+|+ +++|++|+.|+.|++||+.+.. .....+|.+.+.++.|. .+..+++|+.|++|++
T Consensus 106 ~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~ 184 (380)
T 3iz6_a 106 LHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVL 184 (380)
T ss_dssp CCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEE
T ss_pred cCCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEE
Confidence 46678999999995 5899999999999999986532 12345788999999985 3567999999999999
Q ss_pred EEcCCCceee-e-----ecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCC-CceeeeeeCC---CcEEEEecCCCeE
Q psy11885 83 FDFNTQTETV-I-----GTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRS-SRCVGNYTQP---DKVFTMSLCGEKF 151 (327)
Q Consensus 83 wd~~~~~~~~-~-----~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~~~---~~~~~~~~~~~~~ 151 (327)
||+.++.... + .+|...|.++++++ +++.|++|+.|++|++||++. ++++..+..+ ...+.+++++..+
T Consensus 185 wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 264 (380)
T 3iz6_a 185 WDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF 264 (380)
T ss_dssp ECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE
T ss_pred EEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE
Confidence 9999876532 2 46889999999976 889999999999999999984 4666665543 3346677788999
Q ss_pred EEEeCCCeEEEEECCCCccceeeeccc-----ceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885 152 VVGTAGRKVCIWDLRNMGYIMQRRESS-----LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR 226 (327)
Q Consensus 152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~ 226 (327)
++++.|++|++||+++++.+....... ......+++++|++..+++++.++.+.+|................
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--- 341 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN--- 341 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCS---
T ss_pred EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccC---
Confidence 999999999999999875432211110 011246788999999899998888888755443322111100001
Q ss_pred eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCce
Q psy11885 227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK 268 (327)
Q Consensus 227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~ 268 (327)
.|...|.+++|+|++++|+|||.|++|+||++...+
T Consensus 342 ------~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 342 ------SHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ------SCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ------CCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 223468999999999999999999999999987654
No 71
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.6e-30 Score=236.64 Aligned_cols=265 Identities=17% Similarity=0.274 Sum_probs=205.4
Q ss_pred cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE-EecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCC
Q psy11885 10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-KYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
.+..+...|++++|. +.+|++|+.||+|++||..+++... ..+|..+|.+++| ++..+++|+.||+|++||++++
T Consensus 128 ~~~~~~~~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 128 CRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCCSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSC
T ss_pred cccCCCCcEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCC
Confidence 345566789999883 4689999999999999999988544 4469999999998 7889999999999999999987
Q ss_pred ce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee---eeeeC-CCcEEEEecCCCeEEEEeCCCeEEEE
Q psy11885 89 TE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV---GNYTQ-PDKVFTMSLCGEKFVVGTAGRKVCIW 163 (327)
Q Consensus 89 ~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iw 163 (327)
.. ..+..|...|.+++|++ +.+++|+.|++|++||+++++.. ..+.. ...+.++.++++.+++++.|+.|++|
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vw 281 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 65 35678999999999974 69999999999999999987654 33333 34567777889999999999999999
Q ss_pred ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885 164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 243 (327)
Q Consensus 164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~ 243 (327)
|+++.+.+.....+. ....++.+ ++..+++++.++.+.+|....+.. ...+..|. .+|.+++|
T Consensus 282 d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~---------~~v~~~~~ 344 (435)
T 1p22_A 282 NTSTCEFVRTLNGHK--RGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC----LRVLEGHE---------ELVRCIRF 344 (435)
T ss_dssp ETTTCCEEEEEECCS--SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE----EEEECCCS---------SCEEEEEC
T ss_pred ECCcCcEEEEEcCCC--CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCE----EEEEeCCc---------CcEEEEEe
Confidence 999876543332221 22344444 456778888888888866554332 12222232 25788888
Q ss_pred ecCCCeEEEecCCCeEEEEeCCCce---------eeeecCcCCcceEEEEECCCCCEEEEEEccccc
Q psy11885 244 HQEYNTFATGGSDGYVNIWDGFNKK---------RLCQFHRYDTGITSLCFSYDGNVLAIACSYNYE 301 (327)
Q Consensus 244 spd~~~lasgs~dg~i~iWd~~~~~---------~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~ 301 (327)
++.+|++|+.||+|++||+.+++ .+..+.+|..+|++++| ++++|++++.++..
T Consensus 345 --~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 345 --DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI 407 (435)
T ss_dssp --CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred --cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEE
Confidence 78899999999999999987765 67778889999999999 78899999765443
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.8e-30 Score=234.42 Aligned_cols=262 Identities=20% Similarity=0.277 Sum_probs=200.3
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecCCCceeeEEEe---CCceEEEEecCCcEEEEEcCC
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAHSDPVLDCCFQ---DAVHSFSGGLDCTLKMFDFNT 87 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd~~~ 87 (327)
..|.+.|++++|+|+ + +|++|+.|++|++||+.+++.... ..|..+|.+++|. ++..+++|+.|++|++||+++
T Consensus 159 ~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~ 236 (464)
T 3v7d_B 159 SGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236 (464)
T ss_dssp CCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred eCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence 458899999999985 3 899999999999999999986544 4699999999985 567899999999999999986
Q ss_pred Cce------------------------eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE-
Q psy11885 88 QTE------------------------TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV- 141 (327)
Q Consensus 88 ~~~------------------------~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~- 141 (327)
... ..+.+|...|.++ +++++.+++|+.|++|++||+++++++..+..+ ..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 314 (464)
T 3v7d_B 237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY 314 (464)
T ss_dssp CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEE
Confidence 542 2345688888877 567899999999999999999999988887643 334
Q ss_pred -EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccccee
Q psy11885 142 -FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKY 220 (327)
Q Consensus 142 -~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 220 (327)
..+++++..+++++.|+.|++||+++++.+.....+ .....++.+. +..+++++.++.+.+|....... .
T Consensus 315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--~--- 385 (464)
T 3v7d_B 315 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR--K--- 385 (464)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE--E---
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce--e---
Confidence 456677889999999999999999987654332222 2233555554 56778888888887765543221 1
Q ss_pred eeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee-cCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885 221 AFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 221 ~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~-~~~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
...+.. ..+..++|+|++++|++|+ ||.|++||+.+++.+.. +..+..+|++++|+ ++.++++++.
T Consensus 386 -~~~~~~--------~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~ 452 (464)
T 3v7d_B 386 -FSYHHT--------NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEK 452 (464)
T ss_dssp -EEEECT--------TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEE
T ss_pred -eeecCC--------CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEe
Confidence 111110 1356789999999999998 89999999999998876 56777889999997 4566666543
No 73
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-30 Score=226.56 Aligned_cols=240 Identities=19% Similarity=0.317 Sum_probs=183.2
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|...|++++|+|+ +.+|++++.|+.|++||+.+++. .....|...|.+++|+ ++..+++|+.|++|++||++++.
T Consensus 62 ~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 140 (312)
T 4ery_A 62 SGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 140 (312)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred ccCCCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE
Confidence 457789999999995 57999999999999999998885 4455799999999995 78899999999999999998876
Q ss_pred e-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC----CcEEEEecCCCeEEEEeCCCeEEEEE
Q psy11885 90 E-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP----DKVFTMSLCGEKFVVGTAGRKVCIWD 164 (327)
Q Consensus 90 ~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~v~iwD 164 (327)
. ..+..|..+|.+++|+|+++.+++++.|+.|++||+++++++..+... .....++++++.+++++.|+.|++||
T Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 5 456789999999999999999999999999999999998887765432 22356777888999999999999999
Q ss_pred CCCCccceeeecccceeeeEEeEEe-eCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885 165 LRNMGYIMQRRESSLKFQTRCIKCF-PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 243 (327)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~ 243 (327)
+++.+.+.....+..........+. +++..+++++.++.+.+|...... ....+..|. .+|.+++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~---------~~v~~~~~ 287 (312)
T 4ery_A 221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHT---------DVVISTAC 287 (312)
T ss_dssp TTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC----EEEEECCCS---------SCEEEEEE
T ss_pred CCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch----hhhhhhccC---------CcEEEEee
Confidence 9987643222111111111111223 344556777778887776554332 222233332 25889999
Q ss_pred ecCCCeEEEec--CCCeEEEEeCC
Q psy11885 244 HQEYNTFATGG--SDGYVNIWDGF 265 (327)
Q Consensus 244 spd~~~lasgs--~dg~i~iWd~~ 265 (327)
+|+++.|++++ .|++|++|+..
T Consensus 288 ~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 288 HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSSEEEEEECTTTCCEEEEECC
T ss_pred cCcCCceEEEEccCCccEEEecCC
Confidence 99999999986 69999999853
No 74
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.9e-31 Score=228.90 Aligned_cols=268 Identities=14% Similarity=0.199 Sum_probs=204.0
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce-
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE- 90 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~- 90 (327)
+.+.|.+++|+|+ +++++++..++.+.+|+..... ......|..+|.+++|+ ++..+++++ |+.|++||++++..
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 4467999999996 5788877777777777655433 44556899999999995 677788888 99999999987542
Q ss_pred ---eeee--cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc--eeeeeeCC-CcE--EEEecCCCeEEEEeCCCeE
Q psy11885 91 ---TVIG--THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR--CVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKV 160 (327)
Q Consensus 91 ---~~~~--~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~--~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v 160 (327)
..+. .|..+|.+++|+|+++.|++++.|+.|++||+++++ ....+..+ ..+ ..++++++.+++++.|+.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 1222 688999999999999999999999999999999876 34444433 233 4566678899999999999
Q ss_pred EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885 161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 240 (327)
Q Consensus 161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 240 (327)
++||+++.+....... ......++.++|+++.+++++.++.+.+|......... .+. + ..++.+
T Consensus 166 ~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----~~~-~---------~~~v~~ 229 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQG--HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ----QHD-F---------TSQIFS 229 (337)
T ss_dssp EEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEE-C---------SSCEEE
T ss_pred EEEeCCCCceeeeeec--ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe----eec-C---------CCceEE
Confidence 9999998764332221 22345778888988888888888887775554332111 111 1 125789
Q ss_pred EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885 241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 241 v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~ 300 (327)
++|+|++++|++++.|+.|++||+.+++. ..+..|..+|.+++|+|+|++|++++.++.
T Consensus 230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence 99999999999999999999999988764 456778889999999999999999987543
No 75
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5e-32 Score=243.93 Aligned_cols=270 Identities=14% Similarity=0.185 Sum_probs=195.6
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-----EEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCc
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-----RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
....++++|+...++++++.||.|+||++..... ....+|..+|.+++|+ ++..+++|+.||+|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 4567899985444555678899999999966431 2344699999999995 67899999999999999998762
Q ss_pred --------eeeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeee--eC-CCcE--EEEecCCCeEEEEe
Q psy11885 90 --------ETVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNY--TQ-PDKV--FTMSLCGEKFVVGT 155 (327)
Q Consensus 90 --------~~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~--~~-~~~~--~~~~~~~~~~~~~~ 155 (327)
...+.+|...|.+++|+|++ +.|++++.|++|++||+++++++..+ .. ...+ +.+++++..+++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 24567899999999999998 69999999999999999999988887 33 3334 45566788999999
Q ss_pred CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEE---eecCeEEEEEccCCcccccceeeeeeeeeccCCe
Q psy11885 156 AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS---SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI 232 (327)
Q Consensus 156 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~ 232 (327)
.|+.|++||+++.+.+.............++.+.+++..++++ +.++.+.+ |+........... . .
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~i--wd~~~~~~~~~~~-~---~----- 264 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL--WDTKHLEEPLSLQ-E---L----- 264 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEE--EETTBCSSCSEEE-E---C-----
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEE--EcCccccCCceEE-e---c-----
Confidence 9999999999987654332111111123567778876655665 35555555 5543321111110 0 0
Q ss_pred eeEEEeeEEEEecCCCeEE-EecCCCeEEEEeCCCcee-eeecCc--CCcceEEEEECCCCCEEEEEEc
Q psy11885 233 EKIYPVNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKR-LCQFHR--YDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 233 ~~~~~v~~v~~spd~~~la-sgs~dg~i~iWd~~~~~~-~~~~~~--~~~~v~~l~fspdg~~la~~~~ 297 (327)
.+...+.+++|+|+++.|+ +|+.||.|++||+.+++. +..+.. +..+|.+++|+|++.+++++++
T Consensus 265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~ 333 (402)
T 2aq5_A 265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCE 333 (402)
T ss_dssp CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecce
Confidence 0112478899999999996 566899999999988763 333333 4578999999999999886544
No 76
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=8.2e-32 Score=242.09 Aligned_cols=242 Identities=16% Similarity=0.132 Sum_probs=162.5
Q ss_pred EEEecCCCcEEEEEECCCcEEEEECCCCeEEE------EecCCCceeeEEEe---------CCceEEEEecCCcEEEEEc
Q psy11885 21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRL------KYAHSDPVLDCCFQ---------DAVHSFSGGLDCTLKMFDF 85 (327)
Q Consensus 21 i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~------~~~h~~~v~~~~~~---------~~~~~~sgs~Dg~i~vwd~ 85 (327)
..+++ .+.+|++++.|++|+|||...++... ..+|.+.|.+++|+ ++..++|||.|++||+||+
T Consensus 95 ~~~~~-~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 95 NSSPV-YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp --CCE-EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eecCC-CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 33334 45689999999999999999886432 23699999999995 5678999999999999999
Q ss_pred CCCce-eeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeeeC--------------------------
Q psy11885 86 NTQTE-TVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYTQ-------------------------- 137 (327)
Q Consensus 86 ~~~~~-~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~~-------------------------- 137 (327)
.++.. ..+..|..+|.+++|+|++ .+|++|+.|++|++||+++++.......
T Consensus 174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 253 (393)
T 4gq1_A 174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI 253 (393)
T ss_dssp ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence 87654 4566788999999999987 4799999999999999988764322110
Q ss_pred --CCcEEEEe-cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcc
Q psy11885 138 --PDKVFTMS-LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE 214 (327)
Q Consensus 138 --~~~~~~~~-~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (327)
......+. +++..+++++.|+++++||++............ ..+......+.
T Consensus 254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~-------------------------~~~~~~~~~~~ 308 (393)
T 4gq1_A 254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST-------------------------MKLGPKNLLPN 308 (393)
T ss_dssp SSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------------------------------CCSCS
T ss_pred cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec-------------------------CccccEEEccc
Confidence 01122232 568899999999999999997643211000000 00000000000
Q ss_pred cccceeeeeeeeeccCCeeeEEEeeEEEEec--CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEE
Q psy11885 215 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVL 292 (327)
Q Consensus 215 ~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp--d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~l 292 (327)
. ..+... .......|+| ++.++++|+.||+|+|||..+++.+..+..|..+|++|+|||||++|
T Consensus 309 ~-------~~~~~~-------~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~L 374 (393)
T 4gq1_A 309 V-------QGISLF-------PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHL 374 (393)
T ss_dssp E-------EEECSS-------CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEE
T ss_pred c-------cccccc-------CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEE
Confidence 0 000000 0112234444 44466789999999999999998888777888899999999999999
Q ss_pred EEEEcccccc
Q psy11885 293 AIACSYNYEL 302 (327)
Q Consensus 293 a~~~~~~~~~ 302 (327)
|+++.++..+
T Consensus 375 A~as~~Gv~l 384 (393)
T 4gq1_A 375 AIATEGSVLL 384 (393)
T ss_dssp EEEESSEEEE
T ss_pred EEEeCCCeEE
Confidence 9997655443
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-30 Score=230.42 Aligned_cols=247 Identities=13% Similarity=0.170 Sum_probs=186.0
Q ss_pred CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc
Q psy11885 11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
...|.+.|++++|+|+ +.+|++|+.||.|++||+.+++.. ....|...|.+++| ++..+++|+.|+.|++||++...
T Consensus 130 ~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 130 ETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp ECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSS
T ss_pred ecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE-CCCEEEEEcCCCCEEEEecccCc
Confidence 3447789999999995 579999999999999999988754 44579999999999 56799999999999999998443
Q ss_pred --eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCC-eEEEEe--CCCeEE
Q psy11885 90 --ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGE-KFVVGT--AGRKVC 161 (327)
Q Consensus 90 --~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~--~d~~v~ 161 (327)
...+..|...|.+++|+|+++.|++|+.|+.|++||+++++++..+..+ ...+.+++.+. .+++++ .|+.|+
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence 3456789999999999999999999999999999999998887776532 23455666554 455554 799999
Q ss_pred EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe--ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885 162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS--IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN 239 (327)
Q Consensus 162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~ 239 (327)
+||+++.+.+.... ......++.+++++..+++++ .++.+.+|.+...... ....+..|. ..|.
T Consensus 288 i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--~~~~~~~h~---------~~v~ 353 (401)
T 4aez_A 288 FWNAATGARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--KQVDIPAHD---------TRVL 353 (401)
T ss_dssp EEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--EEEEEECCS---------SCCC
T ss_pred EEECCCCCEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--eEEEecCCC---------CCEE
Confidence 99999876543322 223467888999988888754 5677776555432211 111222222 2588
Q ss_pred EEEEecCCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885 240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF 273 (327)
Q Consensus 240 ~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~ 273 (327)
+++|+|++++|++++.||.|++|++.+++.+...
T Consensus 354 ~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 354 YSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 9999999999999999999999999988876554
No 78
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.1e-30 Score=241.67 Aligned_cols=269 Identities=17% Similarity=0.246 Sum_probs=199.6
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-C----CCceeeEEEeCCceEEEEecCCcEEEEEcCC
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-H----SDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT 87 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h----~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~ 87 (327)
.|.+.|++++|+ + +.+|++++.|+.|++||+.+++....+. + ...+.++.++++..+++++.|+.|++||+.+
T Consensus 251 ~~~~~v~~~~~~-~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 251 PVQGGIFALSWL-D-SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp CCCSCEEEEEES-S-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred ccCCceEEEEEc-C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 688899999999 4 5799999999999999999888655443 3 3567788888899999999999999999886
Q ss_pred Cce-eeeecCCccEEEEEEeCC---------------------------------CCEEEEEECCCeEEEEeCCC-----
Q psy11885 88 QTE-TVIGTHDQPIRAVEYSDE---------------------------------VNCILTGSWDTSVKMWDPRS----- 128 (327)
Q Consensus 88 ~~~-~~~~~h~~~V~~l~~~~~---------------------------------~~~l~sgs~d~~i~lwdl~~----- 128 (327)
+.. ..+..|..+|.+++| |+ ++.+++++.|+.|++||+++
T Consensus 329 ~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 329 DEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp EEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred CcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC
Confidence 543 234455555555555 43 56677777777777776643
Q ss_pred -----------------------------CceeeeeeCCCcEEEEecCCCeEEEEeC-CCeEEEEECCCCccceeeeccc
Q psy11885 129 -----------------------------SRCVGNYTQPDKVFTMSLCGEKFVVGTA-GRKVCIWDLRNMGYIMQRRESS 178 (327)
Q Consensus 129 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~v~iwD~~~~~~~~~~~~~~ 178 (327)
++.+..+.....+.++.+.++.+++++. |+.|++||+.+..... .....
T Consensus 408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~ 486 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTP 486 (615)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSC
T ss_pred CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCC
Confidence 2222233333344445555888999999 9999999998754321 11222
Q ss_pred ceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee-eeeccCCeeeEEEeeEEEEec----------CC
Q psy11885 179 LKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC-HRIKEDGIEKIYPVNAISFHQ----------EY 247 (327)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~v~~v~~sp----------d~ 247 (327)
......+++++|++..+++++.++.+.+|......... .+.. | ..+|.+++|+| ++
T Consensus 487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~h---------~~~v~~~~~sp~~~~~~~~~~~~ 553 (615)
T 1pgu_A 487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT----SRWAFR---------TSKINAISWKPAEKGANEEEIEE 553 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----CCSCCC---------SSCEEEEEECCCC------CCSC
T ss_pred ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee----EeecCC---------CCceeEEEEcCccccccccccCC
Confidence 33346788999999999999999998886665443221 1111 2 23689999999 99
Q ss_pred CeEEEecCCCeEEEEeCCCc-eeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885 248 NTFATGGSDGYVNIWDGFNK-KRLCQFHRYDTGITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 248 ~~lasgs~dg~i~iWd~~~~-~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~ 299 (327)
++||+|+.||+|++||+.++ +.+..+.+|..+|++++|+|||+ |++++.++
T Consensus 554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~ 605 (615)
T 1pgu_A 554 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA 605 (615)
T ss_dssp CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred CEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCc
Confidence 99999999999999999987 67888889999999999999999 99988544
No 79
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=8.3e-30 Score=259.57 Aligned_cols=286 Identities=16% Similarity=0.198 Sum_probs=216.8
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe---CCceEEEEecCCcEEEEEcCC
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ---DAVHSFSGGLDCTLKMFDFNT 87 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~---~~~~~~sgs~Dg~i~vwd~~~ 87 (327)
..|.+.|++++|+|+ +.+|++++.|++|++||+.+++.. ....|...|.+++|+ +...+++|+.|+.|++||+++
T Consensus 654 ~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 732 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732 (1249)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred ccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence 357889999999995 579999999999999999998854 445799999999995 345788999999999999998
Q ss_pred Ccee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC-----------------------------
Q psy11885 88 QTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ----------------------------- 137 (327)
Q Consensus 88 ~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~----------------------------- 137 (327)
+... .+.+|...|.+++|+|+++.+++++.|++|++||+++++....+..
T Consensus 733 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1249)
T 3sfz_A 733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812 (1249)
T ss_dssp SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence 7754 5678999999999999999999999999999999987654433210
Q ss_pred -----------------------------CCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEE
Q psy11885 138 -----------------------------PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188 (327)
Q Consensus 138 -----------------------------~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~ 188 (327)
......+++++..+++++.|+.|++||+.+...+.... .......++++
T Consensus 813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~h~~~v~~v~~ 890 (1249)
T 3sfz_A 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR--GHLSWVHGVMF 890 (1249)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC--CCSSCEEEEEE
T ss_pred EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC--CCccceEEEEE
Confidence 11234456667889999999999999998765432222 22234578889
Q ss_pred eeCCCceEEEeecCeEEEEEccCCcccccceee--ee--------------------eeeeccCC--eeeEEEeeEEEEe
Q psy11885 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA--FK--------------------CHRIKEDG--IEKIYPVNAISFH 244 (327)
Q Consensus 189 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~--------------------~h~~~~~~--~~~~~~v~~v~~s 244 (327)
+|++..+++++.++.+.+|.............. .. ........ .....++.+++|+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 999888999998988888654321100000000 00 00000000 0011247899999
Q ss_pred cCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885 245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 245 pd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~ 300 (327)
|+++++++|+.||.|++||+.+++.+..+.+|...|++++|+|||++|++++.++.
T Consensus 971 p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 99999999999999999999999988888899999999999999999999976543
No 80
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=6.1e-30 Score=231.76 Aligned_cols=256 Identities=15% Similarity=0.224 Sum_probs=181.4
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
+.|.+.|++|+|+|+ +.+|++|+.|++|+|||+++++.. ....|...+.++.+. +..+++|+.|+.+++||......
T Consensus 144 ~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~ 221 (420)
T 4gga_A 144 EQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEH 221 (420)
T ss_dssp CSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSC
T ss_pred cCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccce
Confidence 446678999999995 579999999999999999999854 445688888887764 67899999999999999886543
Q ss_pred --eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee----eeee-CCCcEEE--EecCC-CeEEE--EeCCC
Q psy11885 91 --TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV----GNYT-QPDKVFT--MSLCG-EKFVV--GTAGR 158 (327)
Q Consensus 91 --~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~----~~~~-~~~~~~~--~~~~~-~~~~~--~~~d~ 158 (327)
..+..|...+..+.++++++.+++++.|+.+++||..+++.. .... ....+.+ +.+.+ ..+++ |+.|+
T Consensus 222 ~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence 356789999999999999999999999999999999876532 2222 2233444 44433 34554 45799
Q ss_pred eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee--cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885 159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236 (327)
Q Consensus 159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 236 (327)
+|++||+++++....... .....++.+.++...+++++. ++.+.+|.+.... ....+.+|. .
T Consensus 302 ~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~----~v~~l~gH~---------~ 365 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHT---------S 365 (420)
T ss_dssp EEEEEETTTTEEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCS---------S
T ss_pred EEEEEeCCccccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc----EEEEEcCCC---------C
Confidence 999999998765433222 123456677888888877764 5666665544332 222334443 3
Q ss_pred EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEE
Q psy11885 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF 285 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f 285 (327)
+|.+++|+|||++|||||.|++|+|||+.+.........+...+....|
T Consensus 366 ~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 366 RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 6899999999999999999999999999876665555444444433344
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=5.2e-30 Score=246.53 Aligned_cols=249 Identities=20% Similarity=0.336 Sum_probs=182.5
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE-EEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL-RLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|+ +++|++|+.|++|+|||+.+++. .....|...|.+++|+ ++.+++||+.|++|++||+....
T Consensus 427 ~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505 (694)
T ss_dssp ECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred cCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence 457789999999995 58999999999999999999885 4455799999999995 78899999999999999986554
Q ss_pred eeee----ecCCccEEEEEEeCCC--CEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeE
Q psy11885 90 ETVI----GTHDQPIRAVEYSDEV--NCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKV 160 (327)
Q Consensus 90 ~~~~----~~h~~~V~~l~~~~~~--~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v 160 (327)
...+ ..|...|.+++|+|++ ..+++|+.|++|++||++++++...+..+. .+ +++++++..+++++.|++|
T Consensus 506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 3322 3688899999999986 689999999999999999988887776543 33 4566778899999999999
Q ss_pred EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeecc------CCeee
Q psy11885 161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKE------DGIEK 234 (327)
Q Consensus 161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~------~~~~~ 234 (327)
++||+++.+.+.... ......+++++|++. +++++.++.+.+|...................... ....+
T Consensus 586 ~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (694)
T 3dm0_A 586 LLWDLAEGKKLYSLE---ANSVIHALCFSPNRY-WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661 (694)
T ss_dssp EEEETTTTEEEECCB---CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCCCC----------------C
T ss_pred EEEECCCCceEEEec---CCCcEEEEEEcCCCc-EEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCce
Confidence 999999876543221 122356777887754 44555566666655444322211111000000000 00011
Q ss_pred EEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885 235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGF 265 (327)
Q Consensus 235 ~~~v~~v~~spd~~~lasgs~dg~i~iWd~~ 265 (327)
...+.+++|||++++|++|+.||+|+||++.
T Consensus 662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1136789999999999999999999999975
No 82
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=3.8e-28 Score=221.44 Aligned_cols=261 Identities=18% Similarity=0.280 Sum_probs=200.6
Q ss_pred CCCC-eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce-
Q psy11885 14 PEDG-ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE- 90 (327)
Q Consensus 14 ~~~~-I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~- 90 (327)
|.+. +++++|+ +.+|++|+.||+|++||+.+++.. ...+|..+|.+++|. +..+++|+.|++|++||++++..
T Consensus 117 h~~~v~~~~~~~---g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~ 192 (445)
T 2ovr_B 117 HDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECI 192 (445)
T ss_dssp STTSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEE
T ss_pred cCCCcEEEEEEc---CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEE
Confidence 4444 5666665 468999999999999999988854 444799999999997 66899999999999999988765
Q ss_pred eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEEecCCCeEEEEeCCCeEEEEECCCCc
Q psy11885 91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMG 169 (327)
Q Consensus 91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~ 169 (327)
..+..|...|.++.++ ++.+++|+.|++|++||+++++++..+..+ ..+.++.++++.+++++.|+.|++||+++.+
T Consensus 193 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 270 (445)
T 2ovr_B 193 HTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET 270 (445)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE
T ss_pred EEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc
Confidence 3567899999999996 478999999999999999999988887653 4567777889999999999999999998765
Q ss_pred cceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885 170 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249 (327)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~ 249 (327)
.+.....+ .....++.+ ++..+++++.++.+.+|....... ...+..|. ..+.++++ ++++
T Consensus 271 ~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~---------~~v~~~~~--~~~~ 331 (445)
T 2ovr_B 271 CLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC----IHTLTGHQ---------SLTSGMEL--KDNI 331 (445)
T ss_dssp EEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE----EEEECCCC---------SCEEEEEE--ETTE
T ss_pred EeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE----EEEEcCCc---------ccEEEEEE--eCCE
Confidence 44322211 122344444 667788888888888866544332 12222222 13455555 5679
Q ss_pred EEEecCCCeEEEEeCCCceeeeecCc---CCcceEEEEECCCCCEEEEEEccccc
Q psy11885 250 FATGGSDGYVNIWDGFNKKRLCQFHR---YDTGITSLCFSYDGNVLAIACSYNYE 301 (327)
Q Consensus 250 lasgs~dg~i~iWd~~~~~~~~~~~~---~~~~v~~l~fspdg~~la~~~~~~~~ 301 (327)
|++|+.||.|++||+.+++.+..+.. |..+|++++|+ +++|++|+.++..
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v 384 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV 384 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeE
Confidence 99999999999999999988888765 77789999996 5799999876533
No 83
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.7e-29 Score=228.29 Aligned_cols=232 Identities=16% Similarity=0.296 Sum_probs=180.0
Q ss_pred CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC----------Ce-EEEEecCCCceeeEEEe-CCc-eEEEEecC
Q psy11885 11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN----------NN-LRLKYAHSDPVLDCCFQ-DAV-HSFSGGLD 77 (327)
Q Consensus 11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~----------~~-~~~~~~h~~~v~~~~~~-~~~-~~~sgs~D 77 (327)
...|.+.|++++|+|+++.+|++++.||.|++||+.. .+ ......|...|.+++|+ .+. .+++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 3557789999999996567999999999999999976 23 34455799999999995 455 89999999
Q ss_pred CcEEEEEcCCCc--------eeeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCC---ceeeeeeCC-CcE--E
Q psy11885 78 CTLKMFDFNTQT--------ETVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSS---RCVGNYTQP-DKV--F 142 (327)
Q Consensus 78 g~i~vwd~~~~~--------~~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~---~~~~~~~~~-~~~--~ 142 (327)
|+|++||+.... ...+..|...|.+++|+| ++..|++++.|+.|++||++++ +.+..+..+ ..+ +
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 283 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence 999999998732 123557999999999999 6789999999999999999986 455555432 334 4
Q ss_pred EEecCCC-eEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceee
Q psy11885 143 TMSLCGE-KFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA 221 (327)
Q Consensus 143 ~~~~~~~-~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 221 (327)
++++.+. .+++++.|+.|++||+++.+.. + . .
T Consensus 284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~-------~----~------------------------------------~ 316 (430)
T 2xyi_A 284 SFNPYSEFILATGSADKTVALWDLRNLKLK-------L----H------------------------------------S 316 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSC-------S----E------------------------------------E
T ss_pred EeCCCCCCEEEEEeCCCeEEEEeCCCCCCC-------e----E------------------------------------E
Confidence 4555565 5889999999999999863210 0 0 0
Q ss_pred eeeeeeccCCeeeEEEeeEEEEecCCC-eEEEecCCCeEEEEeCCC--------------ceeeeecCcCCcceEEEEEC
Q psy11885 222 FKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDGFN--------------KKRLCQFHRYDTGITSLCFS 286 (327)
Q Consensus 222 ~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs~dg~i~iWd~~~--------------~~~~~~~~~~~~~v~~l~fs 286 (327)
+..|. .+|.+++|+|+++ +|++++.|+.|+|||+.. .+.+..+.+|...|++++|+
T Consensus 317 ~~~h~---------~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 387 (430)
T 2xyi_A 317 FESHK---------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387 (430)
T ss_dssp EECCS---------SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC
T ss_pred eecCC---------CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC
Confidence 00111 1478899999995 589999999999999876 24566677888899999999
Q ss_pred CCCC-EEEEEEcc
Q psy11885 287 YDGN-VLAIACSY 298 (327)
Q Consensus 287 pdg~-~la~~~~~ 298 (327)
|+++ +||+++.+
T Consensus 388 p~~~~~l~s~s~d 400 (430)
T 2xyi_A 388 PNEPWIICSVSED 400 (430)
T ss_dssp SSSTTEEEEEETT
T ss_pred CCCCCEEEEEECC
Confidence 9999 78888744
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-30 Score=249.09 Aligned_cols=239 Identities=17% Similarity=0.190 Sum_probs=183.1
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--E-EEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEEc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--L-RLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFDF 85 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~-~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd~ 85 (327)
..|.+.|++++|+|+ +.+|++|+.||+|++||+.++. . .....|..+|.+++|+ + +..+++|+.||+|++||+
T Consensus 6 ~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 6 NAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp --CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred ccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 457889999999996 5789999999999999998543 3 3344799999999994 5 789999999999999999
Q ss_pred CCCce---eeeecCCccEEEEEEeCC--CCEEEEEECCCeEEEEeCCCCceee--eee-CCCcEEE--Eec---------
Q psy11885 86 NTQTE---TVIGTHDQPIRAVEYSDE--VNCILTGSWDTSVKMWDPRSSRCVG--NYT-QPDKVFT--MSL--------- 146 (327)
Q Consensus 86 ~~~~~---~~~~~h~~~V~~l~~~~~--~~~l~sgs~d~~i~lwdl~~~~~~~--~~~-~~~~~~~--~~~--------- 146 (327)
.++.. ..+..|..+|.+++|+|+ ++.+++|+.|++|++||++++.... .+. ....+.+ +.+
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence 98752 345679999999999999 9999999999999999998874322 222 2333444 444
Q ss_pred ----CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeee
Q psy11885 147 ----CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAF 222 (327)
Q Consensus 147 ----~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 222 (327)
++..+++++.||.|++||+++.... . ... ..+
T Consensus 165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~---------~--~~~---------------------------------~~~ 200 (753)
T 3jro_A 165 NGTKESRKFVTGGADNLVKIWKYNSDAQT---------Y--VLE---------------------------------STL 200 (753)
T ss_dssp --CGGGCCEEEEETTSCEEEEEEETTTTE---------E--EEE---------------------------------EEE
T ss_pred ccCCCCCEEEEEECCCeEEEEeccCCccc---------c--eee---------------------------------eee
Confidence 3678999999999999998754210 0 000 000
Q ss_pred eeeeeccCCeeeEEEeeEEEEecC---CCeEEEecCCCeEEEEeCCCce-----eeeecCcCCcceEEEEECCCCCEEEE
Q psy11885 223 KCHRIKEDGIEKIYPVNAISFHQE---YNTFATGGSDGYVNIWDGFNKK-----RLCQFHRYDTGITSLCFSYDGNVLAI 294 (327)
Q Consensus 223 ~~h~~~~~~~~~~~~v~~v~~spd---~~~lasgs~dg~i~iWd~~~~~-----~~~~~~~~~~~v~~l~fspdg~~la~ 294 (327)
..|. .+|.+++|+|+ +++|++|+.||+|++||+.+++ .+.....|...|++++|+|+|++|++
T Consensus 201 ~~h~---------~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s 271 (753)
T 3jro_A 201 EGHS---------DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271 (753)
T ss_dssp CCCS---------SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEE
T ss_pred cCCC---------CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEE
Confidence 1111 25789999999 8999999999999999998764 33334557788999999999999999
Q ss_pred EEccccccCC
Q psy11885 295 ACSYNYELET 304 (327)
Q Consensus 295 ~~~~~~~~~~ 304 (327)
++.++....+
T Consensus 272 ~s~Dg~I~vw 281 (753)
T 3jro_A 272 SGGDNKVTLW 281 (753)
T ss_dssp ECSSSCEECC
T ss_pred EcCCCEEEEE
Confidence 9876544333
No 85
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.4e-29 Score=223.69 Aligned_cols=240 Identities=15% Similarity=0.146 Sum_probs=176.1
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec---CCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA---HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
.|.+.|++++|+|+++.+|++++.|+.|++||+.+........ |...|.+++|+ ++..+++|+.|+.|++||++..
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 195 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH 195 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC
Confidence 5888999999999556899999999999999999866655544 34779999995 7889999999999999999655
Q ss_pred ceeeeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCC----CceeeeeeCCCcEE--EEec-CCCeEEEEeCCCeE
Q psy11885 89 TETVIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRS----SRCVGNYTQPDKVF--TMSL-CGEKFVVGTAGRKV 160 (327)
Q Consensus 89 ~~~~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~----~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~d~~v 160 (327)
....+..|...|.+++|+|+++ .+++++.|++|++||+++ ++++..+.....+. .+++ ++..+++++.|+.|
T Consensus 196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i 275 (383)
T 3ei3_B 196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEI 275 (383)
T ss_dssp EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEE
T ss_pred EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcE
Confidence 5566778999999999999998 999999999999999987 55666665544454 4556 67899999999999
Q ss_pred EEEECCCCccceeeecccc-----e----------eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeee
Q psy11885 161 CIWDLRNMGYIMQRRESSL-----K----------FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCH 225 (327)
Q Consensus 161 ~iwD~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h 225 (327)
++||+++.+.......+.. . .....+.+.+++.. +++.++.+.+|....+.. ...+..|
T Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~----~~~l~~~ 349 (383)
T 3ei3_B 276 RVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL----VHQLRDP 349 (383)
T ss_dssp EEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE----EEEECBT
T ss_pred EEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce----eeeecCC
Confidence 9999987654322211100 0 00112334444433 445667777755544332 1122221
Q ss_pred eeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885 226 RIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266 (327)
Q Consensus 226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~ 266 (327)
. +...+.+++|+|++++|++|+ |+.|+|||+.+
T Consensus 350 ~-------~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 350 N-------AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp T-------BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred C-------CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 1 112466789999999999997 99999999864
No 86
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.2e-30 Score=233.66 Aligned_cols=266 Identities=14% Similarity=0.097 Sum_probs=189.5
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC-----ceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD-----PVLDCCFQ-DAVHSFSGGLDCTLKMFDFN 86 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-----~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~ 86 (327)
.|++.|++++|||+ +.+||+++.||+|++||.++ +.....|.. .|.+++|+ ++..+++|+.||+|++||+.
T Consensus 83 ~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSS-SSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 45789999999995 57999999999999999644 333233554 49999995 89999999999999999998
Q ss_pred CCce--------eee----ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee---eeee-CC-CcEEEEecCCC
Q psy11885 87 TQTE--------TVI----GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV---GNYT-QP-DKVFTMSLCGE 149 (327)
Q Consensus 87 ~~~~--------~~~----~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~---~~~~-~~-~~~~~~~~~~~ 149 (327)
++.. ..+ .+|...|.+++|+|+| +++++.|++|++||+.+++.. +++. .+ ..+.++.+.++
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~ 237 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDY 237 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETT
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECC
Confidence 8742 333 5678899999999999 889999999999999887742 3443 22 34444444477
Q ss_pred eEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEE--eeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885 150 KFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC--FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 227 (327)
Q Consensus 150 ~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~ 227 (327)
.+++++ +++|++||+.+.+...... ........+.+ ++++..++++..+|. .+|..+
T Consensus 238 ~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------- 296 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------- 296 (588)
T ss_dssp EEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-----------------
T ss_pred EEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-----------------
Confidence 888886 6999999998765422211 12222345666 666555556555555 554433
Q ss_pred ccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCCCCC
Q psy11885 228 KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELETPPD 307 (327)
Q Consensus 228 ~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~ 307 (327)
.++|+||+..+|+. |+++++|+.... .+..+.+ ...|.+++|||||+.+|+++.-.....+=+.
T Consensus 297 ------------~~~~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~lA~~~~i~~~~~~y~i 360 (588)
T 2j04_A 297 ------------ELHVTADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYSIAIVYDMERVAFKYKI 360 (588)
T ss_dssp ------------SEEEECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSEEEEEEEEECSSCCCCC
T ss_pred ------------cEEECCCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCEEEEEEeccCceeEEee
Confidence 25688999888886 999999986543 3444444 5579999999999999999865333222111
Q ss_pred -CCCCCcEEEEEcc
Q psy11885 308 -PIPPNNIFIRHVT 320 (327)
Q Consensus 308 -~~~~~~~~~~~~~ 320 (327)
+.-.=||-.+|+.
T Consensus 361 ~s~~~~~i~f~pL~ 374 (588)
T 2j04_A 361 ASEQSFNIMFAPLY 374 (588)
T ss_dssp SSSCCEEEEEEESS
T ss_pred ccceEEEEEEEEcc
Confidence 2344456666665
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=9.4e-30 Score=231.62 Aligned_cols=248 Identities=15% Similarity=0.181 Sum_probs=169.5
Q ss_pred CCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC---CCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885 11 NSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH---SDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN 86 (327)
Q Consensus 11 ~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h---~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~ 86 (327)
...|.+.|++|+|+|.++.+|+++|.|++|++||++++.......+ ...+.+++|+ ++..+++|+.||.|++||++
T Consensus 160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239 (435)
T ss_dssp CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence 3457889999999996678999999999999999988876555432 3356788885 78899999999999999998
Q ss_pred CCceeeeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCCCceeeeee----CCCcEEE--EecCCCeEEEEeCCCe
Q psy11885 87 TQTETVIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRSSRCVGNYT----QPDKVFT--MSLCGEKFVVGTAGRK 159 (327)
Q Consensus 87 ~~~~~~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~d~~ 159 (327)
......+..|...|.+++|+|++. ++++|+.|++|++||+++.+....+. +...+.+ +++++..|++++.|+.
T Consensus 240 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~ 319 (435)
T 4e54_B 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE 319 (435)
T ss_dssp SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC
T ss_pred cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE
Confidence 766566788999999999999875 78899999999999998876544332 2234444 4567889999999999
Q ss_pred EEEEECCCCccceeeecccce----eeeEEeEEeeCCCceEEEeec----------CeEEEEEccCCcccccceeeeeee
Q psy11885 160 VCIWDLRNMGYIMQRRESSLK----FQTRCIKCFPNKQGYVLSSIE----------GRAAVEYLDTGPEMQKMKYAFKCH 225 (327)
Q Consensus 160 v~iwD~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~h 225 (327)
|++||+++.+.......+... .......+++....++++... ....|..|+..... ....+..
T Consensus 320 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~--~~~~l~~- 396 (435)
T 4e54_B 320 IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK--MMCQLYD- 396 (435)
T ss_dssp EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC--EEEEECC-
T ss_pred EEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc--EEEEEeC-
Confidence 999999887643222111100 001122344444444444321 11123345433211 1111110
Q ss_pred eeccCCeeeEEEeeEE-EEecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885 226 RIKEDGIEKIYPVNAI-SFHQEYNTFATGGSDGYVNIWDGFNKKR 269 (327)
Q Consensus 226 ~~~~~~~~~~~~v~~v-~~spd~~~lasgs~dg~i~iWd~~~~~~ 269 (327)
.|...|.++ +|||+|++||+|+ |++|+||++++++.
T Consensus 397 -------~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 397 -------PESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp -------SSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred -------CCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 111246666 6999999999986 78999999988764
No 88
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-29 Score=246.81 Aligned_cols=245 Identities=11% Similarity=0.068 Sum_probs=177.7
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceee
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETV 92 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~ 92 (327)
.|.+.|++++|+|+ +.+||+|+.||+|+|||..+.+......|..+|.+++|+++.++++++.|++|++||++++....
T Consensus 15 gh~~~V~~lafspd-g~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~ 93 (902)
T 2oaj_A 15 GMSSKPIAAAFDFT-QNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLT 93 (902)
T ss_dssp ECSSCEEEEEEETT-TTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEE
T ss_pred CCCCCcEEEEECCC-CCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEE
Confidence 46789999999995 58999999999999999988887666678889999999877789999999999999999876543
Q ss_pred eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee-----------eee-CCCcE--EEEecC-CCeEEEEeCC
Q psy11885 93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG-----------NYT-QPDKV--FTMSLC-GEKFVVGTAG 157 (327)
Q Consensus 93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~-----------~~~-~~~~~--~~~~~~-~~~~~~~~~d 157 (327)
...|...|.+++|+|+++++++|+.||+|++||++++++.. .+. +...+ +++++. +..+++++.|
T Consensus 94 ~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 94 TVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp EEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred EEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 33477899999999999999999999999999999887531 111 11233 445553 3578999999
Q ss_pred CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885 158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP 237 (327)
Q Consensus 158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 237 (327)
+.| +||+++.+....... .. +.+ ...+. ... ..... |...
T Consensus 174 g~v-lWd~~~~~~~~~~~~-~~----------~~g------~~~~~-------~~~------~~~~~---------h~~~ 213 (902)
T 2oaj_A 174 VTL-TYSLVENEIKQSFIY-EL----------PPF------APGGD-------FSE------KTNEK---------RTPK 213 (902)
T ss_dssp CEE-EEETTTTEEEEEECC-CB----------CTT------CCCST-------TCC------CTTSC---------BCCC
T ss_pred CcE-EEECCCCceEEEEec-cc----------CCc------CCCcc-------ccc------ccccc---------cCCC
Confidence 999 999987542211000 00 000 00000 000 00001 1125
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee--cC---c-------------CCcceEEEEEC----CCC-CEEEE
Q psy11885 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ--FH---R-------------YDTGITSLCFS----YDG-NVLAI 294 (327)
Q Consensus 238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~--~~---~-------------~~~~v~~l~fs----pdg-~~la~ 294 (327)
|.+++|+|+|++||+|+.||+|++||+.+++.+.. +. . +..+|++++|+ ||+ .+|++
T Consensus 214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence 88999999999999999999999999998876542 21 1 23479999995 554 56666
Q ss_pred EEcc
Q psy11885 295 ACSY 298 (327)
Q Consensus 295 ~~~~ 298 (327)
|+.+
T Consensus 294 g~~~ 297 (902)
T 2oaj_A 294 HKSI 297 (902)
T ss_dssp EECS
T ss_pred CCCC
Confidence 6443
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=220.57 Aligned_cols=248 Identities=13% Similarity=0.160 Sum_probs=183.5
Q ss_pred CCCCCeeEEEEecCC--CcEEEEEECCCcEEEEECCCCe-E-EEEecCCCceeeEEE-------eCCceEEEEecCCcEE
Q psy11885 13 PPEDGITAVKFAPNS--NQFLLASSWDCNVSLYDITNNN-L-RLKYAHSDPVLDCCF-------QDAVHSFSGGLDCTLK 81 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~--~~~l~s~~~d~~i~iwd~~~~~-~-~~~~~h~~~v~~~~~-------~~~~~~~sgs~Dg~i~ 81 (327)
.|.+.|++++|+|++ +.+|++++.|+.|++||+.+++ . .....|...|.++.| +++..+++++.|+.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 467899999999963 5799999999999999999876 3 444579999999965 2577999999999999
Q ss_pred EEEcCCCc--eeeeecCC----ccEEEEE----EeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEE--Eec---
Q psy11885 82 MFDFNTQT--ETVIGTHD----QPIRAVE----YSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFT--MSL--- 146 (327)
Q Consensus 82 vwd~~~~~--~~~~~~h~----~~V~~l~----~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~--~~~--- 146 (327)
+||+.++. ...+..|. ..|.+++ |+++++.+++++.|+.|++||+++++..........+.+ +++
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~ 222 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDI 222 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCC
Confidence 99998765 23344433 3788888 678999999999999999999999887666555555544 555
Q ss_pred CCCeEEEEeCCCeEEEEECCCCccceeee---cccceeeeEEeEEeeCCC-ceEEEeecCeEEEEEccCCcccc------
Q psy11885 147 CGEKFVVGTAGRKVCIWDLRNMGYIMQRR---ESSLKFQTRCIKCFPNKQ-GYVLSSIEGRAAVEYLDTGPEMQ------ 216 (327)
Q Consensus 147 ~~~~~~~~~~d~~v~iwD~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~------ 216 (327)
+++.+++++.|+.|++||+++.+...... .........+++++|++. .+++++.++.+.+|.........
T Consensus 223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence 67889999999999999998755432211 112233457788888877 67778888888886665432110
Q ss_pred ---------cceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE-EecCCCeEEEEeCCCcee
Q psy11885 217 ---------KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKR 269 (327)
Q Consensus 217 ---------~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la-sgs~dg~i~iWd~~~~~~ 269 (327)
.....+..| ..+|.+++|+|++++|+ +|+.||.|++||+.+.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVTLS---------TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CCCCCCCEEEEEEEEECC---------SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CccccccccceeeccccC---------CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 011112222 23689999999999998 899999999999887653
No 90
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=3e-28 Score=213.33 Aligned_cols=249 Identities=19% Similarity=0.293 Sum_probs=182.5
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~ 89 (327)
..|.+.|++++|+|+ +.+|++++.|+.|++|+......... ..+...+..+.+ +.+..+++|+.|+.+++||+....
T Consensus 83 ~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~ 161 (340)
T 4aow_A 83 RGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161 (340)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred eCCCCCEEEEEECCC-CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc
Confidence 457789999999995 58999999999999999998875443 346666777777 477899999999999999987665
Q ss_pred ee--eeecCCccEEEEEEeCCC--CEEEEEECCCeEEEEeCCCCceeeeeeCCC-cE--EEEecCCCeEEEEeCCCeEEE
Q psy11885 90 ET--VIGTHDQPIRAVEYSDEV--NCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KV--FTMSLCGEKFVVGTAGRKVCI 162 (327)
Q Consensus 90 ~~--~~~~h~~~V~~l~~~~~~--~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~d~~v~i 162 (327)
.. ....|...+..++|++++ ..+++++.|++|++||+++++++..+..+. .+ +++++++..+++++.|+.|++
T Consensus 162 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 241 (340)
T ss_dssp EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 43 345789999999998764 578899999999999999998887776432 33 456677889999999999999
Q ss_pred EECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885 163 WDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS 242 (327)
Q Consensus 163 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 242 (327)
||+++.+.+...... ....++.+.|+. .+++++.++.+.+|.......... +..+........|...|++++
T Consensus 242 wd~~~~~~~~~~~~~---~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 242 WDLNEGKHLYTLDGG---DIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDE----LKQEVISTSSKAEPPQCTSLA 313 (340)
T ss_dssp EETTTTEEEEEEECS---SCEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEE----ECCC-------CCCCCEEEEE
T ss_pred EEeccCceeeeecCC---ceEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEe----ccccceeeeccCCCCCEEEEE
Confidence 999987654332221 234556666654 566777788877765543322111 111111001112334689999
Q ss_pred EecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885 243 FHQEYNTFATGGSDGYVNIWDGFNKKR 269 (327)
Q Consensus 243 ~spd~~~lasgs~dg~i~iWd~~~~~~ 269 (327)
|+|++++||+|+.||+|+|||+.+|.+
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence 999999999999999999999988753
No 91
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4.3e-29 Score=221.37 Aligned_cols=267 Identities=11% Similarity=0.128 Sum_probs=184.5
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceE-EEEecCCcEEEEEcCCCc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFNTQT 89 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~~~~ 89 (327)
..|++.|++++|+|+ +.+|++|+.| .+++||+++++......+. .+..+.+. .++.+ ++|+.|++|++||+.++.
T Consensus 16 ~~h~~~V~~v~fs~d-g~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQD-QSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp ---CCCCCEEEECTT-SSEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred ccCCCceEEEEECCC-CCEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 557889999999996 5788887755 5799999887755444333 45556663 44444 678889999999998887
Q ss_pred eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC-ceeeeeeCCCcEEEEecCCCeEEE--EeCCCeEEEEECC
Q psy11885 90 ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS-RCVGNYTQPDKVFTMSLCGEKFVV--GTAGRKVCIWDLR 166 (327)
Q Consensus 90 ~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~v~iwD~~ 166 (327)
......|..+|.+++++++. ++.+ .|++|++||++++ +.+..+..+..+.++++ ..+++ ++.+|.|++||++
T Consensus 93 ~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~ 167 (355)
T 3vu4_A 93 DVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQ 167 (355)
T ss_dssp EEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECC
T ss_pred EEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECC
Confidence 65444577799999998754 4444 4789999999988 77666655333444554 66666 5789999999998
Q ss_pred CCccce--------------eeecccceeeeEEeEEeeCCCceEEEeecCe-EEEEEccCCcccccceeeee-e-eeecc
Q psy11885 167 NMGYIM--------------QRRESSLKFQTRCIKCFPNKQGYVLSSIEGR-AAVEYLDTGPEMQKMKYAFK-C-HRIKE 229 (327)
Q Consensus 167 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~-~-h~~~~ 229 (327)
+.+... ......+.....+++++|++..+++++.++. +.+|....+... ..+. . |.
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~----~~~~~g~h~--- 240 (355)
T 3vu4_A 168 SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV----REFRRGLDR--- 240 (355)
T ss_dssp C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE----EEEECTTCC---
T ss_pred CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE----EEEEcCCCC---
Confidence 754100 0111122334678899999988999999997 888665544322 1222 1 22
Q ss_pred CCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceee--eecC---------------------cCCcceEEEEEC
Q psy11885 230 DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL--CQFH---------------------RYDTGITSLCFS 286 (327)
Q Consensus 230 ~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~--~~~~---------------------~~~~~v~~l~fs 286 (327)
.+|.+++|+|++++|++|+.|++|+|||+.++... ..+. ....+...++|+
T Consensus 241 ------~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 314 (355)
T 3vu4_A 241 ------ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI 314 (355)
T ss_dssp ------SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred ------CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence 36899999999999999999999999998764311 1110 011223679999
Q ss_pred CCCCEEEEEEccc
Q psy11885 287 YDGNVLAIACSYN 299 (327)
Q Consensus 287 pdg~~la~~~~~~ 299 (327)
|||++|++++.++
T Consensus 315 ~d~~~l~~~~~dg 327 (355)
T 3vu4_A 315 SESSLVVVWPHTR 327 (355)
T ss_dssp SSSEEEEEETTTT
T ss_pred CCCCEEEEEeCCC
Confidence 9999999998654
No 92
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-29 Score=220.77 Aligned_cols=257 Identities=7% Similarity=-0.019 Sum_probs=181.1
Q ss_pred CcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCC---------Cce-e-eeecC
Q psy11885 28 NQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT---------QTE-T-VIGTH 96 (327)
Q Consensus 28 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~---------~~~-~-~~~~h 96 (327)
+.++++|+.||+|++||+.+++...... ...|.++.+++. +++++.|++|++|+.+. +.. . ....|
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 124 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS 124 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC
Confidence 4689999999999999999887543333 356667777555 99999999999997663 221 1 22356
Q ss_pred CccEEEEEEeC--CCCEEEEEECCCeEEEEeCCCCceeeeeeC----CCcEEEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885 97 DQPIRAVEYSD--EVNCILTGSWDTSVKMWDPRSSRCVGNYTQ----PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGY 170 (327)
Q Consensus 97 ~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~ 170 (327)
..+|.+++|+| +++++++++.|++|++||+++++++..... .....++++++..+++|+.|+.|++||+++++.
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence 68999999999 999999999999999999999988665432 223566778889999999999999999998765
Q ss_pred ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee--EEEEecCCC
Q psy11885 171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN--AISFHQEYN 248 (327)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~--~v~~spd~~ 248 (327)
+.......+.....+++++|++..+++++ ++.+.+|.+........+. .+..|. .++. +++|+|+++
T Consensus 205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP-TYTIPE---------FKTGTVTYDIDDSGK 273 (343)
T ss_dssp CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC-CCBC--------------CCEEEEECTTSS
T ss_pred CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec-cccccc---------ccccceEEEECCCCC
Confidence 41222221234568889999888777777 5565554443322111111 111111 1233 699999999
Q ss_pred eEEEecC-CCeEEEEeCCCceeeeecCcCCcceEEEEECC---CCCEEEEEEcccccc
Q psy11885 249 TFATGGS-DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY---DGNVLAIACSYNYEL 302 (327)
Q Consensus 249 ~lasgs~-dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp---dg~~la~~~~~~~~~ 302 (327)
+|++++. |+.|+||++.+....... .++..++|+| +++.|++++.++...
T Consensus 274 ~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 327 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIA 327 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred EEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceE
Confidence 9999988 999999998665433322 4678889999 899999888665443
No 93
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.3e-28 Score=218.37 Aligned_cols=254 Identities=12% Similarity=0.146 Sum_probs=184.8
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE---EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL---KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
.|.+.|++++|+|+ +.+|++++.|+.|++||+.+++... ...|...|.+++|+ ++..+++++.|+.|++||++..
T Consensus 50 ~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~ 128 (372)
T 1k8k_C 50 EHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 128 (372)
T ss_dssp CCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred CCCCcccEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC
Confidence 57789999999995 5799999999999999999887432 24688899999995 7889999999999999999876
Q ss_pred ce----e-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC------------------CCceeeeeeCC-CcE--E
Q psy11885 89 TE----T-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR------------------SSRCVGNYTQP-DKV--F 142 (327)
Q Consensus 89 ~~----~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~------------------~~~~~~~~~~~-~~~--~ 142 (327)
.. . ....|...|.+++|+|++++|++++.|+.|++||++ .++++..+..+ ..+ +
T Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (372)
T 1k8k_C 129 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV 208 (372)
T ss_dssp TTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred CcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE
Confidence 52 2 235688999999999999999999999999999954 56666666533 233 4
Q ss_pred EEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccC--Ccc--cccc
Q psy11885 143 TMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT--GPE--MQKM 218 (327)
Q Consensus 143 ~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~~~~ 218 (327)
.++++++.+++++.|+.|++||+++.+.+.....+ .....++++++++..++++ .++.+.+|.... +.- ....
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence 55667889999999999999999887654333222 2245778888887655555 777777766654 210 0000
Q ss_pred e---------------e---eeeeeee------ccCCeeeEEEeeEEEEe-cCC---CeEEEecCCCeEEEEeCCCceee
Q psy11885 219 K---------------Y---AFKCHRI------KEDGIEKIYPVNAISFH-QEY---NTFATGGSDGYVNIWDGFNKKRL 270 (327)
Q Consensus 219 ~---------------~---~~~~h~~------~~~~~~~~~~v~~v~~s-pd~---~~lasgs~dg~i~iWd~~~~~~~ 270 (327)
. + ....... ......|..+|++++|+ +++ ++|+||+.||+|++||+.+++.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 0 0 0000000 00001233479999976 666 99999999999999998876543
No 94
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.7e-28 Score=218.64 Aligned_cols=279 Identities=15% Similarity=0.188 Sum_probs=180.1
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe----CCceEEEEecCCcEEEEEcCCC
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ----DAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~----~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
.|.+.|++++|+|+++.+|++++.|+.|++||+.+++......+...+.++.+. ++..+++|+.|+.|++||++++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 478899999999966679999999999999999999987777788889998884 3448999999999999999877
Q ss_pred ce-eeeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeCCCCc-eeeee---------------e-CCCcE--EEEecC
Q psy11885 89 TE-TVIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDPRSSR-CVGNY---------------T-QPDKV--FTMSLC 147 (327)
Q Consensus 89 ~~-~~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~~-~~~~~---------------~-~~~~~--~~~~~~ 147 (327)
.. ..+..|..+|.+++|+|+++ .+++|+.|+.|++||+++++ ++..+ . ....+ +.++++
T Consensus 177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 64 45678999999999999998 58999999999999998765 33322 1 11223 456667
Q ss_pred CCeEEEEeCCCeEEEEECCCCccceeeeccccee---eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885 148 GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF---QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224 (327)
Q Consensus 148 ~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 224 (327)
+..+++++.|+.|++||+++.+............ .............+++++.++.+.++....... ...+..
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----~~~~~~ 332 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ----ITMLKG 332 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE----EEEECC
T ss_pred CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc----eeeecc
Confidence 8899999999999999999865432211111000 001111122345667777788777755544322 222233
Q ss_pred eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885 225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET 304 (327)
Q Consensus 225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~ 304 (327)
|. .+|.+++|+|++++|++|+.||.|++||+.+++.+....... ....++|....+.+.++....+..
T Consensus 333 ~~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 400 (408)
T 4a11_B 333 HY---------KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSA 400 (408)
T ss_dssp CS---------SCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------------------
T ss_pred CC---------CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceee
Confidence 32 258899999999999999999999999999887765543322 224455544444444444444444
Q ss_pred CCC
Q psy11885 305 PPD 307 (327)
Q Consensus 305 ~~~ 307 (327)
|..
T Consensus 401 W~~ 403 (408)
T 4a11_B 401 WSH 403 (408)
T ss_dssp ---
T ss_pred cCC
Confidence 533
No 95
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-28 Score=213.62 Aligned_cols=245 Identities=13% Similarity=0.180 Sum_probs=186.8
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC-----CcEEEEEc
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD-----CTLKMFDF 85 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D-----g~i~vwd~ 85 (327)
..|.+.|++++|+|+ +.+|++++.|+.|++||+.+++......|..++.+++|+ ++..+++++.+ +.|++||+
T Consensus 71 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 71 DGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred hhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence 457789999999995 579999999999999999999877777788999999995 78888999988 99999998
Q ss_pred CCCce------------eeeecCCc--cEEEEEEeCCCCEEEEEECCCeEEEEeCCC-CceeeeeeCC-CcE--EEEecC
Q psy11885 86 NTQTE------------TVIGTHDQ--PIRAVEYSDEVNCILTGSWDTSVKMWDPRS-SRCVGNYTQP-DKV--FTMSLC 147 (327)
Q Consensus 86 ~~~~~------------~~~~~h~~--~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~~~-~~~--~~~~~~ 147 (327)
..... ..+..|.. .+.+++|+|+++.|++++.|+.|++||+++ .+.+..+..+ ..+ +.++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 229 (369)
T 3zwl_B 150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD 229 (369)
T ss_dssp EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTT
T ss_pred cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCC
Confidence 75431 22344555 899999999999999999999999999998 6777666643 333 456667
Q ss_pred CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeE------------EEEEccCCccc
Q psy11885 148 GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRA------------AVEYLDTGPEM 215 (327)
Q Consensus 148 ~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~ 215 (327)
+..+++++.|+.|++||+++.+.+.... .......+.+.|++..+++++.++.. .+..|+....
T Consensus 230 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~- 305 (369)
T 3zwl_B 230 LTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE- 305 (369)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-
T ss_pred CCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-
Confidence 8899999999999999999876443322 22335677888888888888776632 2223332221
Q ss_pred ccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeee
Q psy11885 216 QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLC 271 (327)
Q Consensus 216 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~ 271 (327)
.....+..| ..+|.+++|+|++++|++|+.||.|++|++.++....
T Consensus 306 -~~~~~~~~~---------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 306 -EEIGRVQGH---------FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp -CEEEEEECC---------SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred -cchhheecc---------cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 111122222 2358999999999999999999999999988765433
No 96
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=4.4e-28 Score=236.59 Aligned_cols=269 Identities=15% Similarity=0.149 Sum_probs=202.9
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
.|.+.|++++|+|+ +.+|++++.|+.|++||+.+++.. ....|...|.+++|+ ++..+++++.|++|++||++++..
T Consensus 53 ~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 53 VTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (814)
T ss_dssp CCSSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred cCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence 57789999999995 579999999999999999988854 445699999999995 778999999999999999987633
Q ss_pred --eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeC----CCcEEEEec--CCCeEEEEeCCCeEE
Q psy11885 91 --TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQ----PDKVFTMSL--CGEKFVVGTAGRKVC 161 (327)
Q Consensus 91 --~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~d~~v~ 161 (327)
..+..|..+|.+++|+| +++.+++++.|++|++||+++++....+.. ......+++ ++..+++++.|+.|+
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 45678999999999999 889999999999999999988876665543 233456666 778899999999999
Q ss_pred EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885 162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI 241 (327)
Q Consensus 162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 241 (327)
+||+++.+.+..... ......++.++|+++.+++++.++.+.+|........ ..+..|. .++.++
T Consensus 212 ~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~----~~~~~~~---------~~v~~~ 276 (814)
T 3mkq_A 212 IWDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE----KTLNVGL---------ERSWCI 276 (814)
T ss_dssp EEETTTTEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE----EEECCSS---------SSEEEE
T ss_pred EEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE----EEeecCC---------CcEEEE
Confidence 999987664332222 2223577889999888888888888888655443221 1112111 257899
Q ss_pred EEecCCCeE-EEecCCCeEEEEeCCCcee----------ee---------------------------------ecCcCC
Q psy11885 242 SFHQEYNTF-ATGGSDGYVNIWDGFNKKR----------LC---------------------------------QFHRYD 277 (327)
Q Consensus 242 ~~spd~~~l-asgs~dg~i~iWd~~~~~~----------~~---------------------------------~~~~~~ 277 (327)
+|+|+++.+ ++.+.|+.+.+|++..... +. .+..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (814)
T 3mkq_A 277 ATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD 356 (814)
T ss_dssp EECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS
T ss_pred EEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc
Confidence 999998742 4444567788887653221 11 011233
Q ss_pred cceEEEEECCCCCEEEEEEc
Q psy11885 278 TGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 278 ~~v~~l~fspdg~~la~~~~ 297 (327)
..+.+++|||||++||+++.
T Consensus 357 ~~~~~~~~spdg~~la~~~~ 376 (814)
T 3mkq_A 357 VFPQSLAHSPNGRFVTVVGD 376 (814)
T ss_dssp SCCSEEEECTTSSEEEEEET
T ss_pred cCCceeEECCCCCEEEEecC
Confidence 35789999999999999874
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.1e-27 Score=207.83 Aligned_cols=238 Identities=16% Similarity=0.229 Sum_probs=175.0
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
+.|...|++++|+|+ +++|++|+.|++|++||+++++.. ....|...+.++.+ .+..+++|+.++.+++|+......
T Consensus 64 ~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~ 141 (318)
T 4ggc_A 64 EQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEH 141 (318)
T ss_dssp CSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-ETTEEEEEETTSEEEEEETTSSSC
T ss_pred cCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec-CCCEEEEEecCCceEeeecCCCce
Confidence 456788999999995 579999999999999999999854 44568777766554 467899999999999999887644
Q ss_pred --eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee----ee-CCCcEEEE--ecCCC-eE--EEEeCCC
Q psy11885 91 --TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN----YT-QPDKVFTM--SLCGE-KF--VVGTAGR 158 (327)
Q Consensus 91 --~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~----~~-~~~~~~~~--~~~~~-~~--~~~~~d~ 158 (327)
..+..|...+..+.+.++++.+++++.|++|++||+++++.... .. ....+..+ .+.+. .+ ++++.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
T 4ggc_A 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221 (318)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence 35678999999999999999999999999999999998764322 11 22233333 33333 33 4566789
Q ss_pred eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee--cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885 159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236 (327)
Q Consensus 159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 236 (327)
.|++||.+......... .......+.+.+....+++++. ++.+.+|.+..+. ....+..|. .
T Consensus 222 ~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~----~~~~l~gH~---------~ 285 (318)
T 4ggc_A 222 HIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHT---------S 285 (318)
T ss_dssp EEEEEETTTCCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCS---------S
T ss_pred EEEEEeccccccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc----EEEEEcCCC---------C
Confidence 99999998765432211 1123456677888887777664 5566665444332 222333443 3
Q ss_pred EeeEEEEecCCCeEEEecCCCeEEEEeCCCc
Q psy11885 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNK 267 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~ 267 (327)
+|++++|+|++++|||||.||+|+|||+.+.
T Consensus 286 ~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 286 RVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 6999999999999999999999999998764
No 98
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=1.6e-28 Score=219.98 Aligned_cols=239 Identities=12% Similarity=0.081 Sum_probs=183.6
Q ss_pred ecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc-------eeeeecCCccEEEEEEeCC----C---CEEEEEECCC
Q psy11885 54 YAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT-------ETVIGTHDQPIRAVEYSDE----V---NCILTGSWDT 119 (327)
Q Consensus 54 ~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~-------~~~~~~h~~~V~~l~~~~~----~---~~l~sgs~d~ 119 (327)
.+|.++|.+++|++ ..+++|+.||+|++||+++.. ...+..|..+|.+++|+++ + ++|++++.|+
T Consensus 13 ~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 13 KAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 46999999999977 899999999999999999876 4556789999999999999 9 9999999999
Q ss_pred eEEEEeCCCCce-----eeeeeCC------CcE--EEEe----cCCCe-EEEEeCCCeEEEEECCC------Cccce---
Q psy11885 120 SVKMWDPRSSRC-----VGNYTQP------DKV--FTMS----LCGEK-FVVGTAGRKVCIWDLRN------MGYIM--- 172 (327)
Q Consensus 120 ~i~lwdl~~~~~-----~~~~~~~------~~~--~~~~----~~~~~-~~~~~~d~~v~iwD~~~------~~~~~--- 172 (327)
.|++||+++++. +..+..+ ..+ +.+. +++.. +++++.|+.|++||+++ .+.+.
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 999999988876 6665544 444 4556 66888 99999999999999987 44332
Q ss_pred --eeec-----ccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee---eeeccCCeeeEEEeeEEE
Q psy11885 173 --QRRE-----SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC---HRIKEDGIEKIYPVNAIS 242 (327)
Q Consensus 173 --~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---h~~~~~~~~~~~~v~~v~ 242 (327)
.... ........+++++|++ .+++++.++.+.+|...... ....+.. |... ..++.+++
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~h~~~------~~~i~~i~ 240 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR----PLYNFESQHSMINN------SNSIRSVK 240 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----EEEEEECCC---CC------CCCEEEEE
T ss_pred cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc----eeEEEecccccccc------CCccceEE
Confidence 1111 1123345778888888 77777778887775554322 1222222 2000 23689999
Q ss_pred EecCCCeEEEecCC---CeEEEEeCCCceeeeecCc-------------CCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885 243 FHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHR-------------YDTGITSLCFSYDGNVLAIACSYNYELET 304 (327)
Q Consensus 243 ~spd~~~lasgs~d---g~i~iWd~~~~~~~~~~~~-------------~~~~v~~l~fspdg~~la~~~~~~~~~~~ 304 (327)
|+|++++|++++.| +.|++||+.+++.+..+.. |...|.+++|+|+|++||+++.++....+
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99999999999999 9999999999998888887 88899999999999999999866544333
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-27 Score=216.72 Aligned_cols=270 Identities=10% Similarity=0.006 Sum_probs=192.3
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe---EEEEec-------------------------------------
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN---LRLKYA------------------------------------- 55 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~------------------------------------- 55 (327)
.++++++|+|++ .+|+++ .++.|++||+.+++ ....+.
T Consensus 5 ~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 368999999965 565554 58899999998877 332221
Q ss_pred ------------------CCCceeeEEEe-CCceE-EEEecCCcEEEEEcC--CCcee-eee--cCCccEEEEEEeCCCC
Q psy11885 56 ------------------HSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFN--TQTET-VIG--THDQPIRAVEYSDEVN 110 (327)
Q Consensus 56 ------------------h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~--~~~~~-~~~--~h~~~V~~l~~~~~~~ 110 (327)
|...|.+++|+ ++..+ ++|+.|++|++||+. ++... .+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 22368999995 67775 899999999999998 55443 333 5778999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCceee----eeeC-CCc--EEEEecC---CCeEEEEeCCCeEEEEECCCCccceeeecccce
Q psy11885 111 CILTGSWDTSVKMWDPRSSRCVG----NYTQ-PDK--VFTMSLC---GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK 180 (327)
Q Consensus 111 ~l~sgs~d~~i~lwdl~~~~~~~----~~~~-~~~--~~~~~~~---~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~ 180 (327)
+|++|+.|+.|++|++.+++... .+.. ... .+.++++ +..+++++.|+.|++||+++.+.+... .....
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~h~ 241 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-LFGHK 241 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-CCCCS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-ecCCC
Confidence 99999999999999998876543 4332 223 3456666 668999999999999999876543221 11222
Q ss_pred eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee----------------ccCCeeeEEEeeEEEEe
Q psy11885 181 FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI----------------KEDGIEKIYPVNAISFH 244 (327)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~----------------~~~~~~~~~~v~~v~~s 244 (327)
....+++++ ++..+++++.++.+.+|.+..+.....+ ..+.. ..........+.+++|+
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTF----DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEE----ECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeee----cchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 345778888 8888888888888888666554322111 11100 00000111357899999
Q ss_pred cCCCeEEEec-CCCeEEEEeC--CCc---eeeeecCcCCcceEEEEECCCCCEEEEE
Q psy11885 245 QEYNTFATGG-SDGYVNIWDG--FNK---KRLCQFHRYDTGITSLCFSYDGNVLAIA 295 (327)
Q Consensus 245 pd~~~lasgs-~dg~i~iWd~--~~~---~~~~~~~~~~~~v~~l~fspdg~~la~~ 295 (327)
|++++|++++ .|+.|+||++ .++ +.+..+..+ ..|++++|+|++ ++++.
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~ 371 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTL 371 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEE
Confidence 9999999998 8999999999 555 556666666 789999999964 44444
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.2e-28 Score=219.04 Aligned_cols=246 Identities=14% Similarity=0.191 Sum_probs=185.3
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC-------e-EEEEecCCCceeeEEEe-CC-ceEEEEecCCcEE
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN-------N-LRLKYAHSDPVLDCCFQ-DA-VHSFSGGLDCTLK 81 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~-------~-~~~~~~h~~~v~~~~~~-~~-~~~~sgs~Dg~i~ 81 (327)
..|.+.|++++|+|.++.+|++|+.|++|++||+.++ + +.....|...|.+++|+ ++ ..+++|+.|++|+
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~ 157 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL 157 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence 4578899999999944679999999999999999886 3 34455799999999996 44 5899999999999
Q ss_pred EEEcCCCcee-ee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee-eCC----CcEEEEecCCCeEEE
Q psy11885 82 MFDFNTQTET-VI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY-TQP----DKVFTMSLCGEKFVV 153 (327)
Q Consensus 82 vwd~~~~~~~-~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~-~~~----~~~~~~~~~~~~~~~ 153 (327)
+||++++... .+ ..|...|.+++|+|+++.|++++.|+.|++||+++++.+..+ ..+ .....+++++..+++
T Consensus 158 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (402)
T 2aq5_A 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT 237 (402)
T ss_dssp EEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE
T ss_pred EEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE
Confidence 9999987654 45 679999999999999999999999999999999999988777 332 234556777778888
Q ss_pred E---eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeeecc
Q psy11885 154 G---TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKE 229 (327)
Q Consensus 154 ~---~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~ 229 (327)
+ +.|+.|++||+++.+...............++.+.+++..+++++ .++.+.++.+..... ....+..|..
T Consensus 238 g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~---~~~~l~~~~~-- 312 (402)
T 2aq5_A 238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP---FLHYLSMFSS-- 312 (402)
T ss_dssp EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT---CEEEEEEECC--
T ss_pred eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc---ceEeeccccc--
Confidence 8 689999999999865422222212222346678888887775544 577777766554331 1112222221
Q ss_pred CCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885 230 DGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR 269 (327)
Q Consensus 230 ~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~ 269 (327)
..++.+++|+|++.+++++ |+.+++|++.+++.
T Consensus 313 -----~~~v~~~~~sp~~~~~~s~--~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 313 -----KESQRGMGYMPKRGLEVNK--CEIARFYKLHERKC 345 (402)
T ss_dssp -----SSCCSEEEECCGGGSCGGG--TEEEEEEEEETTEE
T ss_pred -----CCcccceEEecccccceec--ceeEEEEEcCCCcE
Confidence 1258899999999988754 66999999887643
No 101
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-29 Score=228.01 Aligned_cols=248 Identities=10% Similarity=0.122 Sum_probs=180.2
Q ss_pred EEECCCCeEEEE-ecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCC---Cc---eeeeecCCccEEEEEEeCCCCEE
Q psy11885 42 LYDITNNNLRLK-YAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNT---QT---ETVIGTHDQPIRAVEYSDEVNCI 112 (327)
Q Consensus 42 iwd~~~~~~~~~-~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~---~~---~~~~~~h~~~V~~l~~~~~~~~l 112 (327)
.|+.....+... .+|.++|.+++|+ ++.++++|+.|++|++||+.+ +. ......|..+|.+++|+|+++.|
T Consensus 47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 126 (437)
T 3gre_A 47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAF 126 (437)
T ss_dssp GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEE
T ss_pred cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEE
Confidence 488655445555 5688999999995 578999999999999999876 32 22333699999999999999999
Q ss_pred EEEECCCeEEEEeCC---CCceeeeee-------------CCCcEEEEe----cCCCeEEEEeCCCeEEEEECCCCccce
Q psy11885 113 LTGSWDTSVKMWDPR---SSRCVGNYT-------------QPDKVFTMS----LCGEKFVVGTAGRKVCIWDLRNMGYIM 172 (327)
Q Consensus 113 ~sgs~d~~i~lwdl~---~~~~~~~~~-------------~~~~~~~~~----~~~~~~~~~~~d~~v~iwD~~~~~~~~ 172 (327)
++|+.|++|++||++ ++++...+. ....+.++. +++..+++++.|+.|++||+++.+.+.
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 999999999999995 454433222 122233322 447789999999999999999877554
Q ss_pred eeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe----cCCC
Q psy11885 173 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH----QEYN 248 (327)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s----pd~~ 248 (327)
............+++++|++..+++++.++.+.+|......... .+. ..+..+|.+++|+ |++.
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~--------~~~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR----SWS--------FGDHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE----EEB--------CTTCEEEEEEEECTTTCTTEE
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE----EEe--------cCCCCceEEEEeccccCCCcc
Confidence 43332133456888899998888999999988886654432111 111 0112368889555 5678
Q ss_pred eEEEecCCCeEEEEeCCCceeeeecCc--------------------------CCcceEEEEECCCCCEEEEEEcccccc
Q psy11885 249 TFATGGSDGYVNIWDGFNKKRLCQFHR--------------------------YDTGITSLCFSYDGNVLAIACSYNYEL 302 (327)
Q Consensus 249 ~lasgs~dg~i~iWd~~~~~~~~~~~~--------------------------~~~~v~~l~fspdg~~la~~~~~~~~~ 302 (327)
+|++|+.||+|++||+.+++.+..+.+ |...|++++|+ ++++|++|+.++...
T Consensus 275 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 275 IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 999999999999999998886655542 45568899999 789999987655433
No 102
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=9.7e-29 Score=220.10 Aligned_cols=192 Identities=11% Similarity=0.089 Sum_probs=139.9
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe----EEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcC
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN 86 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~ 86 (327)
..|.+.|++++|+|+ +.+|++++.|++|++||+.+++ ......|...|.+++|+ ++..+++|+.|+.|++||++
T Consensus 52 ~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 52 SDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE 130 (377)
T ss_dssp CCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-
T ss_pred ecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC
Confidence 457889999999996 5789999999999999999876 44455799999999995 78899999999999999998
Q ss_pred CCc----eeeeec-CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC------------------CceeeeeeCCCcE--
Q psy11885 87 TQT----ETVIGT-HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS------------------SRCVGNYTQPDKV-- 141 (327)
Q Consensus 87 ~~~----~~~~~~-h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~------------------~~~~~~~~~~~~~-- 141 (327)
++. ...+.. |...|.+++|+|++++|++++.|++|++||++. ++++..+.+...+
T Consensus 131 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 210 (377)
T 3dwl_C 131 QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHA 210 (377)
T ss_dssp ----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEE
T ss_pred CcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEE
Confidence 775 344555 999999999999999999999999999999853 3344444223334
Q ss_pred EEEecCCCeEEEEeCCCeEEEEECCCCcc----ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEE
Q psy11885 142 FTMSLCGEKFVVGTAGRKVCIWDLRNMGY----IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVE 207 (327)
Q Consensus 142 ~~~~~~~~~~~~~~~d~~v~iwD~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 207 (327)
+.+++++..+++++.|+.|++||+++.+. +.... .......+++++|++..+++++ ++...++
T Consensus 211 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~-~~~~~~~ 277 (377)
T 3dwl_C 211 VGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGY-NYSPILL 277 (377)
T ss_dssp EEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEES-SSSEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEc-CCcEEEE
Confidence 45667788999999999999999998764 21111 1222357788998876665554 4444443
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.9e-27 Score=216.37 Aligned_cols=254 Identities=15% Similarity=0.277 Sum_probs=179.1
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
..|.+.|++++|+ +.+|++|+.||+|++||+.+++.. ....|...|.+++|+ +..+++|+.|++|++||++++..
T Consensus 170 ~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 170 TGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTD 245 (435)
T ss_dssp CCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSC
T ss_pred cCCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCC
Confidence 4577899999993 468999999999999999998854 444688999999986 45899999999999999987653
Q ss_pred ----eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEEEEecCCCeEEEEeCCCeEEEEEC
Q psy11885 91 ----TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDL 165 (327)
Q Consensus 91 ----~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~iwD~ 165 (327)
..+.+|...|.++++ +++.+++|+.|++|++||+++++++..+..+ ..+.++.++++.+++++.|+.|++||+
T Consensus 246 ~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 246 ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp CEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 346689999999999 6789999999999999999999998888754 456777788999999999999999999
Q ss_pred CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc-----ceeeeeeeeeccCCeeeEEEeeE
Q psy11885 166 RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK-----MKYAFKCHRIKEDGIEKIYPVNA 240 (327)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~h~~~~~~~~~~~~v~~ 240 (327)
++++.+..... ......++.+ ++..+++++.++.+.+|.......... ....+..|. .+|.+
T Consensus 324 ~~~~~~~~~~~--h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~ 390 (435)
T 1p22_A 324 ECGACLRVLEG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS---------GRVFR 390 (435)
T ss_dssp TTCCEEEEECC--CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS---------SCCCC
T ss_pred CCCCEEEEEeC--CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC---------CCeEE
Confidence 98765433222 2223455555 566788888888888866542211000 111222222 25888
Q ss_pred EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885 241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY 287 (327)
Q Consensus 241 v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp 287 (327)
++| ++++|++|+.||+|++||+.+........ ...+..++.|.+
T Consensus 391 l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~ 434 (435)
T 1p22_A 391 LQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYIS 434 (435)
T ss_dssp EEE--CSSCEEECCSSSEEEEEC------------------------
T ss_pred EEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeeec
Confidence 888 78899999999999999998765544332 234556666654
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.1e-29 Score=225.98 Aligned_cols=258 Identities=11% Similarity=0.046 Sum_probs=185.3
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeee
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVI 93 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~ 93 (327)
-+..|.+++|+|| ++++|+++.|++|+ |...++.. .+|.+.|.+++|++.. .++.+.+|+.+... ...
T Consensus 14 ~~~~v~sv~~SpD-G~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~-~~~ 81 (588)
T 2j04_A 14 FEDWKNNLTWARD-GTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE------FENKLDFELAQQNG-LLN 81 (588)
T ss_dssp CSSSSCCEEECTT-SCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC------CCCTTTTSCCCSSC-SST
T ss_pred hhccEEEEEECCC-CCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC------CcceEEEEeCCCce-Eee
Confidence 4478999999995 68999999999999 75555422 4799999999996432 45555555543222 122
Q ss_pred ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-------CcEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885 94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-------DKVFTMSLCGEKFVVGTAGRKVCIWDLR 166 (327)
Q Consensus 94 ~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~v~iwD~~ 166 (327)
..|...|.+++|+|+|++|++++.||+|++||.++ ++..+.+. ...++++++|+.+++|+.||+|++||++
T Consensus 82 ~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 82 SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 25688999999999999999999999999999644 54444411 2246677889999999999999999998
Q ss_pred CCcc------ceeee---cccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeee-eeeeccCCeeeEE
Q psy11885 167 NMGY------IMQRR---ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFK-CHRIKEDGIEKIY 236 (327)
Q Consensus 167 ~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~ 236 (327)
+... ..... ...+.....+++++|++ +++++.++.+.+|..+.... ......+. .|. .
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-~~~~~tL~~~h~---------~ 227 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-QPVSRMIQNASR---------R 227 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-CCCEEEEECCCS---------S
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-ccceeeeccccc---------C
Confidence 7642 11111 11122346788999887 77788888877755543321 00111121 222 2
Q ss_pred EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEE--CCCCCEEEEEEcccc
Q psy11885 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF--SYDGNVLAIACSYNY 300 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f--spdg~~la~~~~~~~ 300 (327)
.|.+++|+ ++.||+++ +++|++||..+++......+|...|+.++| |||++.||+++.++.
T Consensus 228 ~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 228 KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 58899999 68999997 699999999887764444479999999999 999999999975544
No 105
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=5.1e-27 Score=212.77 Aligned_cols=263 Identities=12% Similarity=0.050 Sum_probs=198.3
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE------ecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK------YAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
..+.+++|+| ++.++++++.|+.|++||+.+++.... ..|...|.+++|+ ++..+++++.|+.|++||++++
T Consensus 123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 4577999999 667888888899999999998886542 2577789999995 6778889999999999999886
Q ss_pred ce-eeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEe--------C
Q psy11885 89 TE-TVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGT--------A 156 (327)
Q Consensus 89 ~~-~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~ 156 (327)
.. ..+..|...+.+++|+|+++.++++ +.|+.|++||+++++.+..+.....+ ..++++++.+++++ .
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccC
Confidence 65 3456788899999999999988654 47999999999999888777665544 44556777888877 4
Q ss_pred CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceE-EEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885 157 GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI 235 (327)
Q Consensus 157 d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 235 (327)
|+.|++||+++.+..... ........+.+.|+++.++ +++.++.+.++....... ...+. + .
T Consensus 282 dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~----~~~~~-~---------~ 344 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTI---GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV----QKSIP-V---------F 344 (433)
T ss_dssp CEEEEEEETTTTEEEEEE---EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE----EEEEE-C---------S
T ss_pred CCeEEEEECCCCcEEeec---cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE----EEEec-C---------C
Confidence 889999999876543221 1122346677888876554 445667666655443221 11111 1 0
Q ss_pred EEeeEEEEecCCCeEEEecC---------------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 236 YPVNAISFHQEYNTFATGGS---------------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 236 ~~v~~v~~spd~~~lasgs~---------------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
..+.+++|+|++++|++++. ||.|++||..+++.+..+.. ...+.+++|+|||++|++++.
T Consensus 345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 420 (433)
T 3bws_A 345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF 420 (433)
T ss_dssp SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence 13678999999999888776 57999999999988877765 457899999999999998875
No 106
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=1.5e-27 Score=206.09 Aligned_cols=195 Identities=18% Similarity=0.283 Sum_probs=147.5
Q ss_pred EecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc---eeeeecCCccEEEEEEeC--CCCEEEEEECCCeEEEEeC
Q psy11885 53 KYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT---ETVIGTHDQPIRAVEYSD--EVNCILTGSWDTSVKMWDP 126 (327)
Q Consensus 53 ~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~---~~~~~~h~~~V~~l~~~~--~~~~l~sgs~d~~i~lwdl 126 (327)
..+|.+.|.+++|+ ++.++++|+.|++|++||++... ...+.+|..+|.+++|++ ++++|+||+.|++|++||+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 34699999999995 78899999999999999997532 246778999999999986 3899999999999999999
Q ss_pred CCCc--eeeeeeC-CCcEE--EEecC--CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe
Q psy11885 127 RSSR--CVGNYTQ-PDKVF--TMSLC--GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS 199 (327)
Q Consensus 127 ~~~~--~~~~~~~-~~~~~--~~~~~--~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (327)
++++ .+..+.. ...+. .++++ +..+++++.|++|++||+++.......
T Consensus 85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~------------------------- 139 (297)
T 2pm7_B 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI------------------------- 139 (297)
T ss_dssp SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-------------------------
T ss_pred CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee-------------------------
Confidence 8874 3344433 23344 44554 678999999999999999754210000
Q ss_pred ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC-------------CCeEEEecCCCeEEEEeCCC
Q psy11885 200 IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE-------------YNTFATGGSDGYVNIWDGFN 266 (327)
Q Consensus 200 ~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd-------------~~~lasgs~dg~i~iWd~~~ 266 (327)
.+..|. ..|.+++|+|+ +++||+|+.|++|++||+.+
T Consensus 140 ---------------------~~~~h~---------~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~ 189 (297)
T 2pm7_B 140 ---------------------IIDAHA---------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189 (297)
T ss_dssp ---------------------EEECCS---------SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred ---------------------eeeccc---------CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence 000011 13556666665 57999999999999999877
Q ss_pred ce----eeeecCcCCcceEEEEECCCC---CEEEEEEcccccc
Q psy11885 267 KK----RLCQFHRYDTGITSLCFSYDG---NVLAIACSYNYEL 302 (327)
Q Consensus 267 ~~----~~~~~~~~~~~v~~l~fspdg---~~la~~~~~~~~~ 302 (327)
++ ....+.+|...|.+|+|+|++ ++||+++.+....
T Consensus 190 ~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~ 232 (297)
T 2pm7_B 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232 (297)
T ss_dssp TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEE
Confidence 65 456778899999999999995 8999998765433
No 107
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-26 Score=200.54 Aligned_cols=231 Identities=14% Similarity=0.131 Sum_probs=177.7
Q ss_pred EEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCC
Q psy11885 51 RLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS 129 (327)
Q Consensus 51 ~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~ 129 (327)
....+|.++|.+++|+++.++++|+.||.|++||+.++.. ..+..|...|.+++|+|+++.+++++.|+.|++|++...
T Consensus 12 ~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 12 ATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp EEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred HHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence 3455799999999998899999999999999999987754 456788999999999999999999999999999998764
Q ss_pred ---ceeeeeeC-CCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEee-CCCceEEEeecCeE
Q psy11885 130 ---RCVGNYTQ-PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRA 204 (327)
Q Consensus 130 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 204 (327)
+.+..+.. ...+.++.++++.+++++.|+.|++||.. +...... .......++.+.+ +++.+++++.++.+
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~~i 167 (313)
T 3odt_A 92 SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG--SLVYNLQ--AHNASVWDAKVVSFSENKFLTASADKTI 167 (313)
T ss_dssp TTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT--EEEEEEE--CCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC--cEEEecc--cCCCceeEEEEccCCCCEEEEEECCCCE
Confidence 34445443 34567777789999999999999999932 2111111 1222346677777 66777888888887
Q ss_pred EEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEE
Q psy11885 205 AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC 284 (327)
Q Consensus 205 ~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~ 284 (327)
.+| +..... ..+.. .+..++.+++|+|++. |++++.||.|++||+.+++.+..+..|..+|++++
T Consensus 168 ~i~--d~~~~~----~~~~~--------~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 168 KLW--QNDKVI----KTFSG--------IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp EEE--ETTEEE----EEECS--------SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEE--ecCceE----EEEec--------cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 774 432211 11111 0112588999999998 99999999999999999999999988999999999
Q ss_pred ECCCCCEEEEEEccccc
Q psy11885 285 FSYDGNVLAIACSYNYE 301 (327)
Q Consensus 285 fspdg~~la~~~~~~~~ 301 (327)
|+|+| .|++++.++..
T Consensus 233 ~~~~~-~l~~~~~dg~v 248 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRTV 248 (313)
T ss_dssp ECTTS-CEEEEETTSEE
T ss_pred EecCC-CEEEEecCCEE
Confidence 99999 57778765433
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=1.9e-27 Score=208.58 Aligned_cols=229 Identities=14% Similarity=0.082 Sum_probs=173.6
Q ss_pred cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc----eeeeecCCccEEEEEEeCCCC-EEEEEECCCeEEEEeC-C
Q psy11885 55 AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT----ETVIGTHDQPIRAVEYSDEVN-CILTGSWDTSVKMWDP-R 127 (327)
Q Consensus 55 ~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~----~~~~~~h~~~V~~l~~~~~~~-~l~sgs~d~~i~lwdl-~ 127 (327)
+|.+.|.+++|+ ++..+++++.|+.|++||+.++. ...+..|...|.+++|+|+++ .|++|+.|+.|++||+ +
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 688999999995 77889999999999999998876 455668999999999999999 9999999999999999 8
Q ss_pred CCceeeeee--CCCcE--EEEecCCCeEEEEeCCCeEEEEECCC---------CccceeeecccceeeeEEeEEeeCCCc
Q psy11885 128 SSRCVGNYT--QPDKV--FTMSLCGEKFVVGTAGRKVCIWDLRN---------MGYIMQRRESSLKFQTRCIKCFPNKQG 194 (327)
Q Consensus 128 ~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (327)
+++...... ....+ +.+.+ +..+++++.|+.|++||+++ .+.+... .......++.+.++.
T Consensus 89 ~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-- 162 (342)
T 1yfq_A 89 SPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---KVKNKIFTMDTNSSR-- 162 (342)
T ss_dssp SSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---SSCCCEEEEEECSSE--
T ss_pred CCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE---eeCCceEEEEecCCc--
Confidence 776532222 33334 44555 88999999999999999986 4322211 133345677776654
Q ss_pred eEEEeecCeEEEEEccC-CcccccceeeeeeeeeccCCeeeEEEeeEEEEec-CCCeEEEecCCCeEEEEeCCCc-----
Q psy11885 195 YVLSSIEGRAAVEYLDT-GPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDGYVNIWDGFNK----- 267 (327)
Q Consensus 195 ~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-d~~~lasgs~dg~i~iWd~~~~----- 267 (327)
+++++.++.+.++.... ... ........| ..++.+++|+| ++++|++|+.||.|++|++...
T Consensus 163 l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~---------~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 163 LIVGMNNSQVQWFRLPLCEDD--NGTIEESGL---------KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTC--CCEEEECSC---------SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred EEEEeCCCeEEEEECCccccc--cceeeecCC---------CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 78888888887765543 211 111111111 12588999999 9999999999999999998776
Q ss_pred -eeeeecCcCCc---------ceEEEEECCCCCEEEEEEcccc
Q psy11885 268 -KRLCQFHRYDT---------GITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 268 -~~~~~~~~~~~---------~v~~l~fspdg~~la~~~~~~~ 300 (327)
+....+..|.. +|.+++|+|+|++||+++.++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 274 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce
Confidence 55666666654 8999999999999999987644
No 109
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.8e-27 Score=212.15 Aligned_cols=243 Identities=12% Similarity=0.156 Sum_probs=185.5
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCc---------------eeeEEEeCCceEEEEe
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDP---------------VLDCCFQDAVHSFSGG 75 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~---------------v~~~~~~~~~~~~sgs 75 (327)
..|...|++++|+|+ +.+|++++.|+.|++||+.+++..... .+... +.+++|+++..+++++
T Consensus 146 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (425)
T 1r5m_A 146 NFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224 (425)
T ss_dssp CCCCSCEEEEEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEEC
T ss_pred cCCCccEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEc
Confidence 457789999999995 578999999999999999998865444 34444 8889998778899999
Q ss_pred cCCcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcEE--EEecCCCeE
Q psy11885 76 LDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKVF--TMSLCGEKF 151 (327)
Q Consensus 76 ~Dg~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~~--~~~~~~~~~ 151 (327)
.|+.|++||+.++.. ..+..|..+|.+++|+|+++.|++++.|+.|++||+++++++..+..+ ..+. .+++++ .+
T Consensus 225 ~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 303 (425)
T 1r5m_A 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KV 303 (425)
T ss_dssp GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EE
T ss_pred CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EE
Confidence 999999999988765 356689999999999999999999999999999999998887777543 3344 455556 89
Q ss_pred EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc--------------
Q psy11885 152 VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK-------------- 217 (327)
Q Consensus 152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------- 217 (327)
++++.|+.|++||+++.+.+.....+ .....++.++|++..+++++.++.+.+|.+........
T Consensus 304 ~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (425)
T 1r5m_A 304 ISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLP 381 (425)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECT--TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEE
T ss_pred EEEeCCCcEEEEECCCCcEeEecccC--CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCccc
Confidence 99999999999999887644332221 23456788899888888888888888765543220000
Q ss_pred --ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885 218 --MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF 265 (327)
Q Consensus 218 --~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~ 265 (327)
....+..|.. ..+|.+++|+|++++|++++.||.|++||+.
T Consensus 382 ~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 382 IPLYASYQSSQD-------NDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCEEEEECCTTC-------CCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred chhhhhhcCccc-------CCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 1111111110 0058899999999999999999999999974
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=2.5e-27 Score=210.83 Aligned_cols=197 Identities=10% Similarity=0.123 Sum_probs=150.7
Q ss_pred CCCCCCeeEEEEecCCCcEEEE--EECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLA--SSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
..++..+++++|||++ ++|++ ++.|++|+|||+.+++......|...|.+++|+ ++.++++++ ++.+++|+..++
T Consensus 130 ~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~ 207 (365)
T 4h5i_A 130 TNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTG 207 (365)
T ss_dssp CCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTC
T ss_pred CCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccC
Confidence 3455679999999965 66554 457899999999999987777888999999995 777788887 556777776665
Q ss_pred cee---eeecCCccEEEEEEeCCCCEEEEEECCC----eEEEEeCCCCcee----eeeeCC-Cc--EEEEecCCCeEEEE
Q psy11885 89 TET---VIGTHDQPIRAVEYSDEVNCILTGSWDT----SVKMWDPRSSRCV----GNYTQP-DK--VFTMSLCGEKFVVG 154 (327)
Q Consensus 89 ~~~---~~~~h~~~V~~l~~~~~~~~l~sgs~d~----~i~lwdl~~~~~~----~~~~~~-~~--~~~~~~~~~~~~~~ 154 (327)
... ....|...|.+++|+|+++.+++++.|+ ++++||+...... ..+..+ .. .+++++++..|++|
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg 287 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA 287 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence 543 3456888999999999999999999887 6899998766432 223322 23 35677889999999
Q ss_pred eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeee
Q psy11885 155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEK 234 (327)
Q Consensus 155 ~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 234 (327)
+.|++|+|||+++++.+.. .. ..|.
T Consensus 288 s~D~~V~iwd~~~~~~~~~----------------------------------~~-------------~gH~-------- 312 (365)
T 4h5i_A 288 SNDNSIALVKLKDLSMSKI----------------------------------FK-------------QAHS-------- 312 (365)
T ss_dssp ETTSCEEEEETTTTEEEEE----------------------------------ET-------------TSSS--------
T ss_pred cCCCEEEEEECCCCcEEEE----------------------------------ec-------------Cccc--------
Confidence 9999999999986532100 00 0121
Q ss_pred EEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885 235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266 (327)
Q Consensus 235 ~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~ 266 (327)
.+|++++||||+++|||||.|++|||||+..
T Consensus 313 -~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 313 -FAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp -SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred -CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 2588999999999999999999999999854
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=8.6e-26 Score=201.96 Aligned_cols=252 Identities=14% Similarity=0.088 Sum_probs=184.7
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceE-EEEecCCcEEEEEcCCCceeeeecCCccEEEEEEe
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYS 106 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~ 106 (327)
.++++++.|+.|++||+.++++.....+...+.+++|+ ++..+ ++++.|++|++||+.+++......+...+.+++|+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s 82 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS 82 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence 56788889999999999999876666655678999995 66666 57778999999999887664433334489999999
Q ss_pred CCCCEEEEE-ECCCeEEEEeCCCCceeeeeeCCCcEE--EEecCCCeE-EEEeCCCeEEEEECCCCccceeeecccceee
Q psy11885 107 DEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQPDKVF--TMSLCGEKF-VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQ 182 (327)
Q Consensus 107 ~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~ 182 (327)
|+++.|+.+ +.|+.|++||+++++.+..+..+..+. .++++++.+ ++++.++.|++||+++.+........ ..
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~ 159 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG---RS 159 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC---SS
T ss_pred CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC---CC
Confidence 999988654 567999999999999888777655544 455667766 67788999999999877643222211 22
Q ss_pred eEEeEEeeCCCceE-EEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec---CCCe
Q psy11885 183 TRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG---SDGY 258 (327)
Q Consensus 183 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs---~dg~ 258 (327)
...+.+.++++.++ ++..++.+.++....... ...+. + ...+.+++|+|++++|++++ .++.
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~-~---------~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV----IDTVK-V---------EAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE----EEEEE-C---------SSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCeE----EEEEe-c---------CCCccceEECCCCCEEEEEecCcCCCc
Confidence 36677888877664 444556666544333221 11111 1 01467899999999999887 6899
Q ss_pred EEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885 259 VNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 259 i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
|++||+.+++.+..+..+. .+.+++|+|||++|+++++.
T Consensus 226 v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~ 264 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSF 264 (391)
T ss_dssp EEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT
T ss_pred EEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCC
Confidence 9999999998887776554 57899999999998666543
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=3.8e-27 Score=214.29 Aligned_cols=248 Identities=13% Similarity=0.179 Sum_probs=174.3
Q ss_pred cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCc------------eeeeecCC------------ccEEEEEEeCCC
Q psy11885 55 AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT------------ETVIGTHD------------QPIRAVEYSDEV 109 (327)
Q Consensus 55 ~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~------------~~~~~~h~------------~~V~~l~~~~~~ 109 (327)
.+.+.|.+++|+ ++.++++|+.||.|++||+.++. ...+.+|. .+|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999995 78899999999999999998765 23566887 889999999998
Q ss_pred --CEEEEEECCCeEEEEeCCCCcee---------------------------------------eee----eCCCcEEEE
Q psy11885 110 --NCILTGSWDTSVKMWDPRSSRCV---------------------------------------GNY----TQPDKVFTM 144 (327)
Q Consensus 110 --~~l~sgs~d~~i~lwdl~~~~~~---------------------------------------~~~----~~~~~~~~~ 144 (327)
..|++++.|++|++||+.+++.. ..+ ......+.+
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764431 011 112234566
Q ss_pred ecCCCeEEEEeCCCeEEEEECCCCccceee------ecccceeeeEEeEEeeCC-CceEEEeecCeEEEEEccCCccccc
Q psy11885 145 SLCGEKFVVGTAGRKVCIWDLRNMGYIMQR------RESSLKFQTRCIKCFPNK-QGYVLSSIEGRAAVEYLDTGPEMQK 217 (327)
Q Consensus 145 ~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (327)
+++++.++++ .|+.|++||+++....... ..........+++++|++ ..+++++.++.+.+|..........
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 7778889998 8999999999854322211 111233346788999987 7888888899888866554432111
Q ss_pred ceeeeeeeeeccCC---eeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC-ceeeeecCcCCcc--------------
Q psy11885 218 MKYAFKCHRIKEDG---IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN-KKRLCQFHRYDTG-------------- 279 (327)
Q Consensus 218 ~~~~~~~h~~~~~~---~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~-~~~~~~~~~~~~~-------------- 279 (327)
....+..|...... ..+..+|.+++|+|++++|++++. +.|++||+.+ ++.+..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 12222222110000 000115899999999999999999 9999999987 7777777666431
Q ss_pred -eEEEEECCCCCEEEEEEccccccCC
Q psy11885 280 -ITSLCFSYDGNVLAIACSYNYELET 304 (327)
Q Consensus 280 -v~~l~fspdg~~la~~~~~~~~~~~ 304 (327)
+..++|+|+|++||+|+.++....+
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMF 369 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEE
Confidence 3349999999999999866544433
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.8e-26 Score=203.22 Aligned_cols=241 Identities=16% Similarity=0.204 Sum_probs=164.5
Q ss_pred EEECCCCeEE-EEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEE-EEEECC
Q psy11885 42 LYDITNNNLR-LKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCI-LTGSWD 118 (327)
Q Consensus 42 iwd~~~~~~~-~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~sgs~d 118 (327)
||++.+.+.. ....|..+|.+++|+ ++..+++|+.| .+++||+++........+ ..+..+++.++++.+ ++++.|
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEEEECSST
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeec-CCeEEEEEcCCCCEEEEEECCc
Confidence 4555555533 345689999999996 67777777755 589999887654433222 247788888888877 567888
Q ss_pred CeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCC-ccceeeecccceeeeEEeEEeeCCCceEE
Q psy11885 119 TSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM-GYIMQRRESSLKFQTRCIKCFPNKQGYVL 197 (327)
Q Consensus 119 ~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (327)
++|++||+++++++..+..+..+.++.++++.++++ .++.|++||+++. +.+..... ......+.+ ..+++
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~-----~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR-----FGGVCEFSN--GLLVY 152 (355)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE-----EEEEEEEET--TEEEE
T ss_pred cEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc-----CCceEEEEc--cEEEE
Confidence 999999999999998888777888888888877766 4789999999876 43322111 222233333 44454
Q ss_pred --EeecCeEEEEEccCCcccc----c--------ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCe-EEEE
Q psy11885 198 --SSIEGRAAVEYLDTGPEMQ----K--------MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY-VNIW 262 (327)
Q Consensus 198 --~~~~~~~~i~~~~~~~~~~----~--------~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~-i~iW 262 (327)
++.++.+.+|......... . ....+..|. .+|.+++|+|++++||+|+.|++ |+||
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---------~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---------NPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCS---------SCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---------CceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 3556777765544322000 0 012223332 36899999999999999999998 9999
Q ss_pred eCCCceeeeecC-c-CCcceEEEEECCCCCEEEEEEccccc
Q psy11885 263 DGFNKKRLCQFH-R-YDTGITSLCFSYDGNVLAIACSYNYE 301 (327)
Q Consensus 263 d~~~~~~~~~~~-~-~~~~v~~l~fspdg~~la~~~~~~~~ 301 (327)
|+.+++.+..+. + |..+|++++|||||++||+++.+...
T Consensus 224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEE
T ss_pred ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEE
Confidence 999999998887 4 88899999999999999999876443
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.8e-26 Score=203.85 Aligned_cols=243 Identities=17% Similarity=0.193 Sum_probs=175.4
Q ss_pred ECCCCe-EEEEecCCCceeeEEEe-C---CceEEEEecCCcEEEEEcCC-Cce--eeeecCCccEEEEEEeCCCCEEEEE
Q psy11885 44 DITNNN-LRLKYAHSDPVLDCCFQ-D---AVHSFSGGLDCTLKMFDFNT-QTE--TVIGTHDQPIRAVEYSDEVNCILTG 115 (327)
Q Consensus 44 d~~~~~-~~~~~~h~~~v~~~~~~-~---~~~~~sgs~Dg~i~vwd~~~-~~~--~~~~~h~~~V~~l~~~~~~~~l~sg 115 (327)
+....+ ......|.+.|.+++|+ + +..+++|+.||.|++||+++ +.. ..+..|..+|.+++|+|++++|+++
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 344444 34455799999999996 4 48999999999999999987 333 3567899999999999999999999
Q ss_pred ECCCeEEEEeCCCCceeeeeeCCCcEEEEe----cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeC
Q psy11885 116 SWDTSVKMWDPRSSRCVGNYTQPDKVFTMS----LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPN 191 (327)
Q Consensus 116 s~d~~i~lwdl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (327)
+.|+.|++||+++++++........+.++. +++..+++++.|+.|++||+++.+.+....... ........
T Consensus 105 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~ 179 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-----RCYCADVI 179 (368)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-----CEEEEEEE
T ss_pred cCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-----CceEEEec
Confidence 999999999999998877665555555444 456679999999999999999876543322211 22333444
Q ss_pred CCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe----EEEecCCCeEEEEeCCCc
Q psy11885 192 KQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT----FATGGSDGYVNIWDGFNK 267 (327)
Q Consensus 192 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~----lasgs~dg~i~iWd~~~~ 267 (327)
.+.+++++.++...++.+...... .......+ . ..+.++++.++... +++|+.||.|++||+...
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSE--FRRIESPL-------K--HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEE--EEECCCSC-------S--SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred CCeeEEEeCCCcEEEEEeccccch--hhhccccc-------c--CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 557777888888777665443211 11000000 0 12455666666555 999999999999999876
Q ss_pred ---eeeeecCcCCc------------ceEEEEECCCCCEEEEEEcccccc
Q psy11885 268 ---KRLCQFHRYDT------------GITSLCFSYDGNVLAIACSYNYEL 302 (327)
Q Consensus 268 ---~~~~~~~~~~~------------~v~~l~fspdg~~la~~~~~~~~~ 302 (327)
+.+..+..|.. +|++++|+|+|++||+++.++...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~ 298 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS 298 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEE
T ss_pred CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEE
Confidence 44555556654 699999999999999998765433
No 115
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=3.2e-27 Score=205.92 Aligned_cols=201 Identities=16% Similarity=0.278 Sum_probs=152.3
Q ss_pred CCCCCCeeEEEEecC-CCcEEEEEECCCcEEEEECCCCe---EEEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEE
Q psy11885 12 SPPEDGITAVKFAPN-SNQFLLASSWDCNVSLYDITNNN---LRLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFD 84 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd 84 (327)
..|.+.|++++|+|. .+.+|++++.|++|++||+.+++ ......|...|.+++|+ + +..+++|+.|++|++||
T Consensus 54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd 133 (316)
T 3bg1_A 54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133 (316)
T ss_dssp ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEE
T ss_pred cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEe
Confidence 357889999999863 35789999999999999998864 23345699999999995 3 67899999999999999
Q ss_pred cCCCce----eeeecCCccEEEEEEeCC-----------------CCEEEEEECCCeEEEEeCCCC---ceeeeeeCC-C
Q psy11885 85 FNTQTE----TVIGTHDQPIRAVEYSDE-----------------VNCILTGSWDTSVKMWDPRSS---RCVGNYTQP-D 139 (327)
Q Consensus 85 ~~~~~~----~~~~~h~~~V~~l~~~~~-----------------~~~l~sgs~d~~i~lwdl~~~---~~~~~~~~~-~ 139 (327)
+..... ..+..|...|.+++|+|+ +++|++|+.|++|++||++.. +++..+..+ .
T Consensus 134 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213 (316)
T ss_dssp ECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred cCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence 987532 234578899999999987 468999999999999999755 345555543 3
Q ss_pred cEEEEecC--C----CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCc
Q psy11885 140 KVFTMSLC--G----EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP 213 (327)
Q Consensus 140 ~~~~~~~~--~----~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 213 (327)
.+.++.++ + ..|++++.|++|++||+++.... ... ..
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~------~~~--~~----------------------------- 256 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN------TWS--PK----------------------------- 256 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC------CCB--CC-----------------------------
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc------chh--hh-----------------------------
Confidence 45555543 3 57999999999999998752100 000 00
Q ss_pred ccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC
Q psy11885 214 EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF 265 (327)
Q Consensus 214 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~ 265 (327)
.+..|. .+|.+++|+|++++||+|+.|++|+||+..
T Consensus 257 -------~~~~~~---------~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 257 -------LLHKFN---------DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp -------EEEECS---------SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred -------hhhcCC---------CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 000111 147899999999999999999999999964
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=6.1e-27 Score=201.74 Aligned_cols=172 Identities=9% Similarity=0.023 Sum_probs=120.9
Q ss_pred cCCcEEEEEcCC-Cce-eeeecCCccEEEEEEeC---CCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc------EEEE
Q psy11885 76 LDCTLKMFDFNT-QTE-TVIGTHDQPIRAVEYSD---EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK------VFTM 144 (327)
Q Consensus 76 ~Dg~i~vwd~~~-~~~-~~~~~h~~~V~~l~~~~---~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~------~~~~ 144 (327)
.|+.|++|++.. ++. ..+..|...+..++|++ ++..|+||+.|++||+||++++++++++..+.. ..++
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 499999999954 433 34567888899999998 779999999999999999999999998874321 2356
Q ss_pred ecCCCeE------------EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCC
Q psy11885 145 SLCGEKF------------VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG 212 (327)
Q Consensus 145 ~~~~~~~------------~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 212 (327)
+++|..+ ++|+.|++|++||.++.+.+. ...+.+ |++
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~----------v~~~~~-p~G-------------------- 283 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG----------VMLYCL-PPG-------------------- 283 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEE----------EEEECC-CTT--------------------
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE----------EEEeec-cCC--------------------
Confidence 7777655 567788899999987653210 000000 110
Q ss_pred cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceE-EEEECCCCCE
Q psy11885 213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGIT-SLCFSYDGNV 291 (327)
Q Consensus 213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~-~l~fspdg~~ 291 (327)
|.. . .+..+.++..+|+|+.|++|+|||+.+++.+.++.+|...+. +++|||||++
T Consensus 284 ------------h~~---------~--~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 284 ------------QAG---------R--FLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp ------------CCC---------C--EEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE
T ss_pred ------------Ccc---------e--eEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE
Confidence 000 0 112233477899999999999999999999999988877655 6899999999
Q ss_pred EEEEEccccc
Q psy11885 292 LAIACSYNYE 301 (327)
Q Consensus 292 la~~~~~~~~ 301 (327)
||+|+.+...
T Consensus 341 LaSGS~D~TI 350 (356)
T 2w18_A 341 LLAGQKDGNI 350 (356)
T ss_dssp EEEECTTSCE
T ss_pred EEEEECCCcE
Confidence 9999855443
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=5.8e-25 Score=196.60 Aligned_cols=246 Identities=12% Similarity=0.124 Sum_probs=180.0
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceeee
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETVI 93 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~~ 93 (327)
..+++++|+|++..++++++.|++|++||+.++++.....+...+.+++|+ ++.+++ +++.|+.|++||+.+++....
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE
Confidence 469999999975444577779999999999999977666666689999995 666665 555679999999998776543
Q ss_pred ecCCccEEEEEEeCCCCEE-EEEECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeE-EEEeCCCeEEEEECCCCc
Q psy11885 94 GTHDQPIRAVEYSDEVNCI-LTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKF-VVGTAGRKVCIWDLRNMG 169 (327)
Q Consensus 94 ~~h~~~V~~l~~~~~~~~l-~sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~d~~v~iwD~~~~~ 169 (327)
..+...+.+++|+|+++.+ ++++.|+.|++||+++++.+..+..+... ..++++++.+ ++++.++.|++||+++.+
T Consensus 112 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 112 VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 3445578999999999977 68888999999999999888877655444 4456667776 567788999999998865
Q ss_pred cceeeecccceeeeEEeEEeeCCCceEEEee---cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecC
Q psy11885 170 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSI---EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246 (327)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd 246 (327)
....... .....++++++++..+++++. ++.+.+ |+..... ....+..|. .+.+++|+|+
T Consensus 192 ~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~--~d~~~~~--~~~~~~~~~----------~~~~~~~s~d 254 (391)
T 1l0q_A 192 VIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSM--IDTGTNK--ITARIPVGP----------DPAGIAVTPD 254 (391)
T ss_dssp EEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEE--EETTTTE--EEEEEECCS----------SEEEEEECTT
T ss_pred EEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEE--EECCCCe--EEEEEecCC----------CccEEEEccC
Confidence 4322211 223467788888877777763 455555 4433211 111111111 2578999999
Q ss_pred CCeE-EEecCCCeEEEEeCCCceeeeecCcCCc
Q psy11885 247 YNTF-ATGGSDGYVNIWDGFNKKRLCQFHRYDT 278 (327)
Q Consensus 247 ~~~l-asgs~dg~i~iWd~~~~~~~~~~~~~~~ 278 (327)
+++| ++++.|+.|++||+.+++.+..+..+..
T Consensus 255 g~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 255 GKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 9987 6778999999999999988877755544
No 118
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.2e-26 Score=201.27 Aligned_cols=203 Identities=19% Similarity=0.230 Sum_probs=154.2
Q ss_pred CCCCCCeeEEEEecC-CCcEEEEEECCCcEEEEECCCCe--E-EEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEE
Q psy11885 12 SPPEDGITAVKFAPN-SNQFLLASSWDCNVSLYDITNNN--L-RLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFD 84 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~~--~-~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd 84 (327)
..|.+.|++++|+|+ ++.+|++++.|+.|++||+.+++ . .....|...|.+++|+ + +..+++++.|+.|++||
T Consensus 52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence 457889999999874 25799999999999999999986 2 3344588999999995 4 78999999999999999
Q ss_pred cCCCc---eeeeecCCccEEEEEEeC-------------CCCEEEEEECCCeEEEEeCCCCce----eeeeeCC-CcE--
Q psy11885 85 FNTQT---ETVIGTHDQPIRAVEYSD-------------EVNCILTGSWDTSVKMWDPRSSRC----VGNYTQP-DKV-- 141 (327)
Q Consensus 85 ~~~~~---~~~~~~h~~~V~~l~~~~-------------~~~~l~sgs~d~~i~lwdl~~~~~----~~~~~~~-~~~-- 141 (327)
+.... ...+..|...|.+++|+| +++.+++++.|+.|++||+++++. ...+..+ ..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 211 (379)
T ss_dssp CCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred cCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeE
Confidence 98763 234668999999999999 699999999999999999987653 2333332 234
Q ss_pred EEEecC---CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885 142 FTMSLC---GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM 218 (327)
Q Consensus 142 ~~~~~~---~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 218 (327)
+.++++ +..+++++.|+.|++||+++....... . ....
T Consensus 212 ~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~----------------------~~~~------- 252 (379)
T 3jrp_A 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK----------T----------------------LLKE------- 252 (379)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE----------E----------------------ESSS-------
T ss_pred EEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcccee----------e----------------------eecc-------
Confidence 455666 678999999999999998764310000 0 0000
Q ss_pred eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885 219 KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266 (327)
Q Consensus 219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~ 266 (327)
..| ..+|.+++|+|++++|++++.||.|++|++..
T Consensus 253 ----~~~---------~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 253 ----EKF---------PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ----SCC---------SSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ----ccC---------CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 000 01467888999999999988899999998763
No 119
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=9.1e-26 Score=197.28 Aligned_cols=248 Identities=12% Similarity=0.151 Sum_probs=159.6
Q ss_pred CCCCCCeeEEEEecC-CCcEEEEEECCCcEEEEECCCC---------e-EEEEecCCCceeeEEEe-C--CceEEEEecC
Q psy11885 12 SPPEDGITAVKFAPN-SNQFLLASSWDCNVSLYDITNN---------N-LRLKYAHSDPVLDCCFQ-D--AVHSFSGGLD 77 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~---------~-~~~~~~h~~~v~~~~~~-~--~~~~~sgs~D 77 (327)
..|.+.|++++|+|. ++.+|++++.|+.|++||+.++ + ......|...|.+++|+ + +..+++++.|
T Consensus 54 ~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 357789999999994 2579999999999999999876 3 33445789999999995 4 7889999999
Q ss_pred CcEEEEEcCCCcee-e-------------eecCCccEEEEEEeCC---CCEEEEEECCCeEEEEeCCCCce--eeeeeC-
Q psy11885 78 CTLKMFDFNTQTET-V-------------IGTHDQPIRAVEYSDE---VNCILTGSWDTSVKMWDPRSSRC--VGNYTQ- 137 (327)
Q Consensus 78 g~i~vwd~~~~~~~-~-------------~~~h~~~V~~l~~~~~---~~~l~sgs~d~~i~lwdl~~~~~--~~~~~~- 137 (327)
+.|++||+.+.... . ...|...+.+++|+|+ +..+++++.|+.+.+|+...++. +..+..
T Consensus 134 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 213 (351)
T 3f3f_A 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH 213 (351)
T ss_dssp CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC
T ss_pred CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC
Confidence 99999999865421 0 1257788999999997 89999999999998888877764 444443
Q ss_pred CCcEE--EEecCC----CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeE--EEEEc
Q psy11885 138 PDKVF--TMSLCG----EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRA--AVEYL 209 (327)
Q Consensus 138 ~~~~~--~~~~~~----~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~ 209 (327)
...+. .+++++ +.+++++.|+.|++||+++............ ........+.......+...+.. .+..+
T Consensus 214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT--NSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------C
T ss_pred CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccc--ceeccCCCcccccccccccccccceeeeec
Confidence 23344 455555 5799999999999999986532211100000 00000000110011111111110 11111
Q ss_pred cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee
Q psy11885 210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ 272 (327)
Q Consensus 210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~ 272 (327)
+.. .......+..| ..+|++++|+|++++|++|+.||.|+|||+.+++.+..
T Consensus 292 ~~~--~~~~~~~~~~h---------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 292 SNL--QVELLSEHDDH---------NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp CSE--EEEEEEEECTT---------SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred ccc--cccEEEEEecc---------cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 110 00111111112 22589999999999999999999999999988765443
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-25 Score=202.94 Aligned_cols=240 Identities=13% Similarity=0.102 Sum_probs=173.3
Q ss_pred CCCCCeeEEEEecCCCcE-EEEEECCCcEEEEECC--CCeEEEEe---cCCCceeeEEEe-CCceEEEEecCCcEEEEEc
Q psy11885 13 PPEDGITAVKFAPNSNQF-LLASSWDCNVSLYDIT--NNNLRLKY---AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF 85 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~-l~s~~~d~~i~iwd~~--~~~~~~~~---~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~ 85 (327)
.|.+.|++++|+|++ .+ +++++.|+.|++||+. +++..... .|...|.+++|+ ++.++++|+.|+.|++|++
T Consensus 100 ~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 355689999999965 56 5889999999999998 66643332 577889999995 7889999999999999999
Q ss_pred CCCcee-----eeecCCccEEEEEEeCC---CCEEEEEECCCeEEEEeCCCCceeeeee-C-CCcE--EEEecCCCeEEE
Q psy11885 86 NTQTET-----VIGTHDQPIRAVEYSDE---VNCILTGSWDTSVKMWDPRSSRCVGNYT-Q-PDKV--FTMSLCGEKFVV 153 (327)
Q Consensus 86 ~~~~~~-----~~~~h~~~V~~l~~~~~---~~~l~sgs~d~~i~lwdl~~~~~~~~~~-~-~~~~--~~~~~~~~~~~~ 153 (327)
...... .+.+|...|.+++|+|+ +++|++|+.|++|++||+++++++..+. . ...+ ++++ ++..+++
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s 257 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS 257 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence 876532 45679999999999999 9999999999999999999988877633 2 2334 4455 7889999
Q ss_pred EeCCCeEEEEECCCCccceeeecc-----------------------cceeeeEEeEEeeCCCceEEEe-ecCeEEEEEc
Q psy11885 154 GTAGRKVCIWDLRNMGYIMQRRES-----------------------SLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYL 209 (327)
Q Consensus 154 ~~~d~~v~iwD~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ 209 (327)
++.|+.|++||+++++.+...... ........+.+.|+++.+++++ .++.+.+|..
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999987644322211 1112345678888887777777 6677777655
Q ss_pred --cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC------CCeEEEEeCC
Q psy11885 210 --DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS------DGYVNIWDGF 265 (327)
Q Consensus 210 --~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~------dg~i~iWd~~ 265 (327)
...... .....+..| .++.+++|+|++.++++++. +..|++|.+.
T Consensus 338 ~~~~~~~l-~~~~~~~~~----------~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 338 SEKQKGDL-ALKQIITFP----------YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CSSSTTCE-EEEEEEECS----------SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ccCCCCce-eeccEeccC----------CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 211111 111112211 25789999996544444443 4568888754
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.4e-25 Score=214.00 Aligned_cols=203 Identities=19% Similarity=0.242 Sum_probs=156.6
Q ss_pred CCCCCCeeEEEEecCC-CcEEEEEECCCcEEEEECCCCe---EEEEecCCCceeeEEEe-C--CceEEEEecCCcEEEEE
Q psy11885 12 SPPEDGITAVKFAPNS-NQFLLASSWDCNVSLYDITNNN---LRLKYAHSDPVLDCCFQ-D--AVHSFSGGLDCTLKMFD 84 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~-~~~l~s~~~d~~i~iwd~~~~~---~~~~~~h~~~v~~~~~~-~--~~~~~sgs~Dg~i~vwd 84 (327)
..|.+.|++++|+|+. +.+|++|+.||+|++||+.+++ ......|..+|.+++|+ + +..+++|+.||+|++||
T Consensus 50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwd 129 (753)
T 3jro_A 50 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129 (753)
T ss_dssp CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEE
Confidence 4578899999999852 5799999999999999999886 23344689999999995 4 78999999999999999
Q ss_pred cCCCc---eeeeecCCccEEEEEEeC-------------CCCEEEEEECCCeEEEEeCCCCc----eeeeeeC-CCcE--
Q psy11885 85 FNTQT---ETVIGTHDQPIRAVEYSD-------------EVNCILTGSWDTSVKMWDPRSSR----CVGNYTQ-PDKV-- 141 (327)
Q Consensus 85 ~~~~~---~~~~~~h~~~V~~l~~~~-------------~~~~l~sgs~d~~i~lwdl~~~~----~~~~~~~-~~~~-- 141 (327)
+.++. ...+..|...|.+++|+| +++.+++|+.||+|++||++++. +...+.. ...+
T Consensus 130 l~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (753)
T ss_dssp CCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred eecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEE
Confidence 98763 234678999999999999 58999999999999999998763 3344443 2334
Q ss_pred EEEecC---CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885 142 FTMSLC---GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM 218 (327)
Q Consensus 142 ~~~~~~---~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 218 (327)
+.++++ +..+++++.|+.|++||+++......... ...
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~--------------------------------~~~------- 250 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTL--------------------------------LKE------- 250 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCB--------------------------------SSS-------
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEE--------------------------------ecc-------
Confidence 445566 67899999999999999886431000000 000
Q ss_pred eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885 219 KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266 (327)
Q Consensus 219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~ 266 (327)
..| ...|.+++|+|++++|++|+.||.|++|++..
T Consensus 251 ----~~~---------~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 251 ----EKF---------PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ----SCC---------SSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ----CCC---------CCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 001 01477899999999999999999999999763
No 122
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1e-24 Score=197.28 Aligned_cols=267 Identities=10% Similarity=0.041 Sum_probs=190.5
Q ss_pred CCeeEEEEecCCCcEEEEEE----CCC----cEEEEEC--CCCeEE---EEecCCCceeeEEEeC---------------
Q psy11885 16 DGITAVKFAPNSNQFLLASS----WDC----NVSLYDI--TNNNLR---LKYAHSDPVLDCCFQD--------------- 67 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~----~d~----~i~iwd~--~~~~~~---~~~~h~~~v~~~~~~~--------------- 67 (327)
..|+..+|.+.+..++++|+ .|| +|+|||+ .+++.. ....|...+..+++..
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 47788889887767888887 467 8999999 887743 2345766666555431
Q ss_pred CceEEEEecC------CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCC---eEEEEeCCCCceeeeeeCC
Q psy11885 68 AVHSFSGGLD------CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDT---SVKMWDPRSSRCVGNYTQP 138 (327)
Q Consensus 68 ~~~~~sgs~D------g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~---~i~lwdl~~~~~~~~~~~~ 138 (327)
+..++.++.+ ++|++||+++.....+..|...|.+++|+|+|+.|++++.|+ .|++||++++++.......
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~ 222 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 222 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence 5566666554 799999998766677778999999999999999999999885 9999999998875433333
Q ss_pred Cc--EEEEecCCCeEE-EEeCCC--eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCC
Q psy11885 139 DK--VFTMSLCGEKFV-VGTAGR--KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTG 212 (327)
Q Consensus 139 ~~--~~~~~~~~~~~~-~~~~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~ 212 (327)
.. ...++++|+.++ +++.++ .|.+||+++.+.. . ..........+.++|+++.++.++. ++...++.++..
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~--l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-Q--VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E--CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-e--CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 33 456777888777 555554 5999999876531 1 1112223467788898887777765 455566666644
Q ss_pred cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC---CeEEEEeCCCceeeeecCcCCcceEEEEECCCC
Q psy11885 213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD---GYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDG 289 (327)
Q Consensus 213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d---g~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg 289 (327)
.... . .+..+. ..+.+++|+|||++|++++.+ ..|++||+.+++. ..+..+. .+.+++|||||
T Consensus 300 ~~~~--~-~l~~~~---------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg 365 (415)
T 2hqs_A 300 GGAP--Q-RITWEG---------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNG 365 (415)
T ss_dssp SSCC--E-ECCCSS---------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTS
T ss_pred CCCE--E-EEecCC---------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCC
Confidence 3211 1 111111 146789999999999988764 5899999988765 3454444 78999999999
Q ss_pred CEEEEEEccc
Q psy11885 290 NVLAIACSYN 299 (327)
Q Consensus 290 ~~la~~~~~~ 299 (327)
++|++++.+.
T Consensus 366 ~~l~~~s~~~ 375 (415)
T 2hqs_A 366 TMVIYSSSQG 375 (415)
T ss_dssp SEEEEEEEET
T ss_pred CEEEEEEcCC
Confidence 9999998655
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.4e-24 Score=187.15 Aligned_cols=195 Identities=13% Similarity=0.094 Sum_probs=136.1
Q ss_pred CCCCeeEEEEecCC---CcEEEEEEC--------------------CCcEEEEECCC-CeE-EEEecCCCceeeEEEe--
Q psy11885 14 PEDGITAVKFAPNS---NQFLLASSW--------------------DCNVSLYDITN-NNL-RLKYAHSDPVLDCCFQ-- 66 (327)
Q Consensus 14 ~~~~I~~i~fs~~~---~~~l~s~~~--------------------d~~i~iwd~~~-~~~-~~~~~h~~~v~~~~~~-- 66 (327)
+.+.|++++|+|++ ++++++++. |+.|++|++.. ++. .....|...+..++|+
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 34578899999951 356666553 88888888844 654 3445677777777773
Q ss_pred --CCceEEEEecCCcEEEEEcCCCce-eeeecCC---ccEEEEEEeCCCCEE------------EEEECCCeEEEEeCCC
Q psy11885 67 --DAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHD---QPIRAVEYSDEVNCI------------LTGSWDTSVKMWDPRS 128 (327)
Q Consensus 67 --~~~~~~sgs~Dg~i~vwd~~~~~~-~~~~~h~---~~V~~l~~~~~~~~l------------~sgs~d~~i~lwdl~~ 128 (327)
++..++|||.|++||+||+.+++. ..+.+|. ..+.+++|+|+|+++ ++|+.|++|++||+.+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 457899999999999999998875 3455443 367788999999876 6788999999999999
Q ss_pred Cceeeeee-----C-CCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC
Q psy11885 129 SRCVGNYT-----Q-PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG 202 (327)
Q Consensus 129 ~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (327)
++++..+. . .......+..+..+++++.|++|+|||+++++.+..
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t----------------------------- 320 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL----------------------------- 320 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEE-----------------------------
T ss_pred CEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEE-----------------------------
Confidence 98876542 1 112444455577899999999999999987542100
Q ss_pred eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeC
Q psy11885 203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDG 264 (327)
Q Consensus 203 ~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~ 264 (327)
+ ..|.. ..+.+++|||||++||+|+.|++|||||.
T Consensus 321 ------L-------------~gH~~--------~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 321 ------L-------------PPVSD--------QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ------E-------------CCC----------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ------e-------------cCCCC--------CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 0 00100 01335899999999999999999999985
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-24 Score=190.26 Aligned_cols=226 Identities=10% Similarity=0.058 Sum_probs=165.1
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECC---------CCeEE-E-EecCCCceeeEEE-e--CCceEEEEecCCcEE
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDIT---------NNNLR-L-KYAHSDPVLDCCF-Q--DAVHSFSGGLDCTLK 81 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~---------~~~~~-~-~~~h~~~v~~~~~-~--~~~~~~sgs~Dg~i~ 81 (327)
..|+++.|+|. +++++.|++|++|+.. +++.. . ...|.++|.+++| + ++.++++|+.|++|+
T Consensus 77 ~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 152 (343)
T 3lrv_A 77 PNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG 152 (343)
T ss_dssp ECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred CCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence 46777888884 8999999999999765 44422 2 2256788999999 4 678899999999999
Q ss_pred EEEcCCCceeee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee-eeeeC--CCcE--EEEecCCCeEEEE
Q psy11885 82 MFDFNTQTETVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV-GNYTQ--PDKV--FTMSLCGEKFVVG 154 (327)
Q Consensus 82 vwd~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~-~~~~~--~~~~--~~~~~~~~~~~~~ 154 (327)
+||++++..... ..|...|.+++|+|++.+|++|+.|+.|++||+++++.. ..+.. ...+ +.+++++..++++
T Consensus 153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~ 232 (343)
T 3lrv_A 153 FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVE 232 (343)
T ss_dssp EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEE
T ss_pred EEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEE
Confidence 999998776432 345668999999999999999999999999999998876 55554 3344 4456678889999
Q ss_pred eCCCeEEEEECCCCccceeeec---ccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccC
Q psy11885 155 TAGRKVCIWDLRNMGYIMQRRE---SSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKED 230 (327)
Q Consensus 155 ~~d~~v~iwD~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~ 230 (327)
+ ++.|++||+++.+.+..... +.......++++.|+++.+++++. ++.+.+|.++..... +.
T Consensus 233 ~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~----~~--------- 298 (343)
T 3lrv_A 233 C-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN----WT--------- 298 (343)
T ss_dssp E-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS----EE---------
T ss_pred e-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc----eE---------
Confidence 8 55999999998764322211 111111146888888888888777 788787666543211 10
Q ss_pred CeeeEEEeeEEEEec---CCCeEEEecCCCeEEEEe
Q psy11885 231 GIEKIYPVNAISFHQ---EYNTFATGGSDGYVNIWD 263 (327)
Q Consensus 231 ~~~~~~~v~~v~~sp---d~~~lasgs~dg~i~iWd 263 (327)
..++..++|+| +...|++++.||.++++-
T Consensus 299 ----~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 299 ----KDEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp ----EEEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred ----ecCceeEecCccccccceeEEEecCCceEEEE
Confidence 02567888998 889999999999998875
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=5.6e-24 Score=193.18 Aligned_cols=195 Identities=22% Similarity=0.302 Sum_probs=146.7
Q ss_pred EEEecCCCceeeEEEeC--CceEEEEecCCcEEEEEcCC----------Cc-eeeeecCCccEEEEEEeCCCC-EEEEEE
Q psy11885 51 RLKYAHSDPVLDCCFQD--AVHSFSGGLDCTLKMFDFNT----------QT-ETVIGTHDQPIRAVEYSDEVN-CILTGS 116 (327)
Q Consensus 51 ~~~~~h~~~v~~~~~~~--~~~~~sgs~Dg~i~vwd~~~----------~~-~~~~~~h~~~V~~l~~~~~~~-~l~sgs 116 (327)
.....|.+.|.+++|++ +..+++++.||.|++||+.+ .. ...+..|...|.+++|+|++. .|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 34457999999999964 46888999999999999976 22 235678999999999999988 999999
Q ss_pred CCCeEEEEeCCCCce-------eeeeeC-CCcEE--EEec-CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEE
Q psy11885 117 WDTSVKMWDPRSSRC-------VGNYTQ-PDKVF--TMSL-CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRC 185 (327)
Q Consensus 117 ~d~~i~lwdl~~~~~-------~~~~~~-~~~~~--~~~~-~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~ 185 (327)
.||+|++||++++.. ...+.. ...+. .+++ .+..+++++.|+.|++||+++.... ...
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-----~~~------ 270 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-----KPS------ 270 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-----SCS------
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-----cce------
Confidence 999999999987432 122322 22344 4455 4567899999999999999864210 000
Q ss_pred eEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC-eEEEecCCCeEEEEeC
Q psy11885 186 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGGSDGYVNIWDG 264 (327)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs~dg~i~iWd~ 264 (327)
..+..|. .+|++++|+|+++ +|++|+.||+|++||+
T Consensus 271 ----------------------------------~~~~~~~---------~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~ 307 (430)
T 2xyi_A 271 ----------------------------------HTVDAHT---------AEVNCLSFNPYSEFILATGSADKTVALWDL 307 (430)
T ss_dssp ----------------------------------EEEECCS---------SCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred ----------------------------------eEeecCC---------CCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence 0000111 1478999999997 5889999999999999
Q ss_pred CC-ceeeeecCcCCcceEEEEECCCCC-EEEEEEccc
Q psy11885 265 FN-KKRLCQFHRYDTGITSLCFSYDGN-VLAIACSYN 299 (327)
Q Consensus 265 ~~-~~~~~~~~~~~~~v~~l~fspdg~-~la~~~~~~ 299 (327)
++ ...+..+..|...|++++|+|+++ +||+++.++
T Consensus 308 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence 87 455777778888999999999996 577777654
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=3.5e-22 Score=180.92 Aligned_cols=269 Identities=9% Similarity=0.037 Sum_probs=183.5
Q ss_pred CCCeeEEE---EecCCCcEEEE-------------EECCC--cEEEEECCCC--eEEEEecCCCceeeEEEeC-CceEEE
Q psy11885 15 EDGITAVK---FAPNSNQFLLA-------------SSWDC--NVSLYDITNN--NLRLKYAHSDPVLDCCFQD-AVHSFS 73 (327)
Q Consensus 15 ~~~I~~i~---fs~~~~~~l~s-------------~~~d~--~i~iwd~~~~--~~~~~~~h~~~v~~~~~~~-~~~~~s 73 (327)
..++..++ |+|+++..+++ ++.++ .|..||..++ +..........+.+++|++ +..+++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 139 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIP 139 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEE
Confidence 34667778 88854333222 22333 3444444445 3333344445667888964 455667
Q ss_pred EecCCcEEEEEcCCCceee------eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC---cEEEE
Q psy11885 74 GGLDCTLKMFDFNTQTETV------IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD---KVFTM 144 (327)
Q Consensus 74 gs~Dg~i~vwd~~~~~~~~------~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~---~~~~~ 144 (327)
++.|+.|++||+.++.... +..|...|.+++|+++++.+++++.|+.|++||+++++.+..+..+. ...++
T Consensus 140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 219 (433)
T 3bws_A 140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLY 219 (433)
T ss_dssp BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEE
T ss_pred eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEE
Confidence 7788999999998876532 23688899999999999999999999999999999988887776432 23566
Q ss_pred ecCCCeEEE-EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC------eEEEEEccCCccccc
Q psy11885 145 SLCGEKFVV-GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG------RAAVEYLDTGPEMQK 217 (327)
Q Consensus 145 ~~~~~~~~~-~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~ 217 (327)
++++..+++ ++.++.|++||+++++.+..... ......+++.|+++.+++++... +..+..|+.....
T Consensus 220 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-- 294 (433)
T 3bws_A 220 DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK---IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-- 294 (433)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEECCC---CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--
T ss_pred cCCCCEEEEEecCCCcEEEEECCCCcEEEEecC---CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--
Confidence 777777754 45799999999987654322211 22356778888887777766421 2334445543221
Q ss_pred ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE-EEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885 218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF-ATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l-asgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~ 296 (327)
..... .+...+.+++|+|+++.+ ++++.|+.|++||..+++.+..+. +...+.+++|+|||++|++++
T Consensus 295 ~~~~~----------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 363 (433)
T 3bws_A 295 LIDTI----------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSC 363 (433)
T ss_dssp EEEEE----------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEE
T ss_pred EEeec----------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEe
Confidence 11111 112246789999999754 677899999999999888777664 556789999999999999987
Q ss_pred ccc
Q psy11885 297 SYN 299 (327)
Q Consensus 297 ~~~ 299 (327)
...
T Consensus 364 ~~~ 366 (433)
T 3bws_A 364 RGP 366 (433)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=3.9e-24 Score=192.03 Aligned_cols=241 Identities=11% Similarity=0.106 Sum_probs=137.3
Q ss_pred CCCCeeEEEEe---cCCCcEEEEEECCCcEEEEECCCC--------e--EEEEecCCCceeeEEEe--------------
Q psy11885 14 PEDGITAVKFA---PNSNQFLLASSWDCNVSLYDITNN--------N--LRLKYAHSDPVLDCCFQ-------------- 66 (327)
Q Consensus 14 ~~~~I~~i~fs---~~~~~~l~s~~~d~~i~iwd~~~~--------~--~~~~~~h~~~v~~~~~~-------------- 66 (327)
-+....+++|. |+...+ ++++.|+.|.+|+.... . ......+..++..+.+.
T Consensus 14 l~~~p~~~~w~~~~~~~~~l-~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (393)
T 4gq1_A 14 LNVRPYTTTWCSQSPSCSNL-LAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDG 92 (393)
T ss_dssp TTCCEEEEEECTTSGGGTTE-EEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC------
T ss_pred CCCCCeEEEEeCCCCCCCCE-EEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCc
Confidence 34566778884 433344 44556889999986321 1 11122344444444331
Q ss_pred -------CCceEEEEecCCcEEEEEcCCCcee------eeecCCccEEEEEEeC--------CCCEEEEEECCCeEEEEe
Q psy11885 67 -------DAVHSFSGGLDCTLKMFDFNTQTET------VIGTHDQPIRAVEYSD--------EVNCILTGSWDTSVKMWD 125 (327)
Q Consensus 67 -------~~~~~~sgs~Dg~i~vwd~~~~~~~------~~~~h~~~V~~l~~~~--------~~~~l~sgs~d~~i~lwd 125 (327)
++..+++|+.|++||+||++.+... .+.+|.+.|++|+|+| |+++|+||+.|++||+||
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 2346889999999999999877532 2467999999999997 789999999999999999
Q ss_pred CCCCceeee-eeCCCcEEE--EecCC-CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec
Q psy11885 126 PRSSRCVGN-YTQPDKVFT--MSLCG-EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE 201 (327)
Q Consensus 126 l~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (327)
++++.++.. +.....+.+ +++.+ ..+++++.|++|++||+++.+...............+ .....
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~----------~s~~~- 241 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL----------LTLNT- 241 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS----------EEEES-
T ss_pred CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE----------Eeccc-
Confidence 988765544 344444554 44444 3699999999999999987643211100000000000 00000
Q ss_pred CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe-cCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcce
Q psy11885 202 GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH-QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGI 280 (327)
Q Consensus 202 ~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s-pd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v 280 (327)
... ........| ...+.+++|+ ||++.|++++.|+++++||+..++....+..+...+
T Consensus 242 ----------~~~--~~~~~~~~~---------~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~ 300 (393)
T 4gq1_A 242 ----------LPL--VNTCHSSGI---------ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKL 300 (393)
T ss_dssp ----------GGG--C------CC---------SSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred ----------ccc--eeeeecccc---------cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence 000 000000111 1246788887 899999999999999999998776665555444444
Q ss_pred EEEEECC
Q psy11885 281 TSLCFSY 287 (327)
Q Consensus 281 ~~l~fsp 287 (327)
..+.++|
T Consensus 301 ~~~~~~~ 307 (393)
T 4gq1_A 301 GPKNLLP 307 (393)
T ss_dssp ---CCSC
T ss_pred ccEEEcc
Confidence 4444443
No 128
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=6.6e-21 Score=167.50 Aligned_cols=273 Identities=12% Similarity=0.089 Sum_probs=189.3
Q ss_pred CCCeeEEEEecCCCcEEEEEEC-------CCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEc
Q psy11885 15 EDGITAVKFAPNSNQFLLASSW-------DCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDF 85 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~ 85 (327)
...+..++|+|++ +++++++. ++.|.+||..+++..........+..++++ ++..++ ++..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQE-NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTT-TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCC-CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3578899999965 55565553 568999999998876665555567788885 666555 5555799999999
Q ss_pred CCCcee-eeecCCc---------cEEEEEEeCCCCEEEEEE--CCCeEEEEeCCCCceeeeeeC-C--CcEEEEecCCCe
Q psy11885 86 NTQTET-VIGTHDQ---------PIRAVEYSDEVNCILTGS--WDTSVKMWDPRSSRCVGNYTQ-P--DKVFTMSLCGEK 150 (327)
Q Consensus 86 ~~~~~~-~~~~h~~---------~V~~l~~~~~~~~l~sgs--~d~~i~lwdl~~~~~~~~~~~-~--~~~~~~~~~~~~ 150 (327)
++++.. .+..+.. .+..++|+|+++.++.++ .++.|.+||+++++.+..+.. . ...+.++++++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 887653 3333221 268899999999888776 478999999999988877762 2 234677888999
Q ss_pred EEEEeCCCeEEEEECCCCccceeeeccc--ceeeeEEeEEeeCCCceEEEeec-CeEEEEEccCCcccccceeeeeeeee
Q psy11885 151 FVVGTAGRKVCIWDLRNMGYIMQRRESS--LKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRI 227 (327)
Q Consensus 151 ~~~~~~d~~v~iwD~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~h~~ 227 (327)
++++..++.|.+||+++.+......... .......+++.|+++.++++... +.+.++....+.. ...+..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~--- 271 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI----LAKVAA--- 271 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE----EEEEEC---
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE----EEEEEc---
Confidence 9999999999999998876443222111 11224557888888766555543 4444433322221 111110
Q ss_pred ccCCeeeEEEeeEEEEecCCCeEE-EecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccccccCC
Q psy11885 228 KEDGIEKIYPVNAISFHQEYNTFA-TGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNYELET 304 (327)
Q Consensus 228 ~~~~~~~~~~v~~v~~spd~~~la-sgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~~~~~~ 304 (327)
. ....++|+|++++++ +...++.|.+||..+++.+..+... ..+.+++|+|||++|+++.........
T Consensus 272 ~--------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~~~~ 340 (353)
T 3vgz_A 272 P--------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQKSTKQQ 340 (353)
T ss_dssp S--------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECCCBTTB
T ss_pred C--------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcccccccc
Confidence 0 124689999999655 5557899999999999888777543 367899999999988888766544433
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=4.3e-22 Score=192.60 Aligned_cols=273 Identities=10% Similarity=0.040 Sum_probs=192.7
Q ss_pred CCCeeEEEEecCCCcEEEEEEC-CC-----cEEEEECCCCeEEEEec-CC------------------------CceeeE
Q psy11885 15 EDGITAVKFAPNSNQFLLASSW-DC-----NVSLYDITNNNLRLKYA-HS------------------------DPVLDC 63 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~-h~------------------------~~v~~~ 63 (327)
...|++++|+|+ +++|++++. |+ .|++||+.+++...... +. ..+.++
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999996 578898888 88 89999999988654443 22 236788
Q ss_pred EEe-CCceEEEEecCCcEEEEEcCCC---ceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC
Q psy11885 64 CFQ-DAVHSFSGGLDCTLKMFDFNTQ---TETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD 139 (327)
Q Consensus 64 ~~~-~~~~~~sgs~Dg~i~vwd~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~ 139 (327)
+|+ ++.++++++. +.|++||+.++ ....+..|...+..++|+|||++|+.++ ++.|++||+.+++.........
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence 995 7788888875 99999999987 5556677888899999999999999987 4699999999887654433221
Q ss_pred -------------------cEEEEecCCCeEEEEeCCC---------------------------------eEEEEECCC
Q psy11885 140 -------------------KVFTMSLCGEKFVVGTAGR---------------------------------KVCIWDLRN 167 (327)
Q Consensus 140 -------------------~~~~~~~~~~~~~~~~~d~---------------------------------~v~iwD~~~ 167 (327)
....++++|+.|++++.|+ .|.+||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 3467888999999887665 788999987
Q ss_pred -CccceeeecccceeeeEEeEEeeCCCceEEEeec---CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885 168 -MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE---GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 243 (327)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~ 243 (327)
.+................+++ |+++.+++++.+ ....++.|+...... ...+..+.. .....+.+++|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~-----~~~~~~~~~~~ 344 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSP-----TWVPLHNSLRF 344 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECS-----SCCCCCSCCEE
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCC-----CcCCcCCceEE
Confidence 653211111112234567788 998887776542 345666666543211 111111110 00002457899
Q ss_pred ecCCCeEEEecCCCeEEEEeCC-CceeeeecCcCCcceEEE-EECCCCCEEEEEEccc
Q psy11885 244 HQEYNTFATGGSDGYVNIWDGF-NKKRLCQFHRYDTGITSL-CFSYDGNVLAIACSYN 299 (327)
Q Consensus 244 spd~~~lasgs~dg~i~iWd~~-~~~~~~~~~~~~~~v~~l-~fspdg~~la~~~~~~ 299 (327)
+|||+++++++.||.++||.+. +++ +..+..+...+.++ +|||||+.|++.+..+
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence 9999999999999988888654 344 66777777778887 6999999887766543
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=1.3e-21 Score=176.82 Aligned_cols=235 Identities=10% Similarity=-0.003 Sum_probs=172.3
Q ss_pred CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCC---cEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE
Q psy11885 38 CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDC---TLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL 113 (327)
Q Consensus 38 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg---~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 113 (327)
+.|++||+.++.......|...+.+++|+ ++.++++++.|+ .|++||+.+++...+..|...+.+++|+|||+.|+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la 238 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEE
Confidence 79999999876666677888999999995 788999999885 99999999888777777888999999999999887
Q ss_pred -EEECCCe--EEEEeCCCCceeeeeeCCCc--EEEEecCCCeEEEEeC-CC--eEEEEECCCCccceeeecccceeeeEE
Q psy11885 114 -TGSWDTS--VKMWDPRSSRCVGNYTQPDK--VFTMSLCGEKFVVGTA-GR--KVCIWDLRNMGYIMQRRESSLKFQTRC 185 (327)
Q Consensus 114 -sgs~d~~--i~lwdl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-d~--~v~iwD~~~~~~~~~~~~~~~~~~~~~ 185 (327)
+++.|+. |++||++++++......... ...+++++..+++++. ++ .|.+||+.+.+.. .. .........
T Consensus 239 ~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l--~~~~~~~~~ 315 (415)
T 2hqs_A 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RI--TWEGSQNQD 315 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-EC--CCSSSEEEE
T ss_pred EEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EE--ecCCCcccC
Confidence 6666654 99999998876433222323 3566778888888776 44 6888898876521 11 111123456
Q ss_pred eEEeeCCCceEEEeec-CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCC---eEEE
Q psy11885 186 IKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG---YVNI 261 (327)
Q Consensus 186 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg---~i~i 261 (327)
++++|+++.++.++.+ +...++.|+...... ..+..+. .+.+++|+|||+.|++++.++ .|++
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~~~~----------~~~~~~~spdg~~l~~~s~~~~~~~l~~ 382 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSSTF----------LDETPSLAPNGTMVIYSSSQGMGSVLNL 382 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCCSS----------SCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred eEECCCCCEEEEEECcCCceEEEEEECCCCCE---EEecCCC----------CcCCeEEcCCCCEEEEEEcCCCccEEEE
Confidence 7888988877777654 345555666443211 1111110 367899999999999988876 7999
Q ss_pred EeCCCceeeeecCcCCcceEEEEECCCC
Q psy11885 262 WDGFNKKRLCQFHRYDTGITSLCFSYDG 289 (327)
Q Consensus 262 Wd~~~~~~~~~~~~~~~~v~~l~fspdg 289 (327)
||+. ++.+..+..+...|.+++|||.-
T Consensus 383 ~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 383 VSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 9986 55677788888899999999963
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5e-22 Score=169.66 Aligned_cols=251 Identities=10% Similarity=0.014 Sum_probs=174.4
Q ss_pred EEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC-Cceeee-ecC-CccEEEEEEeCC
Q psy11885 33 ASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT-QTETVI-GTH-DQPIRAVEYSDE 108 (327)
Q Consensus 33 s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~-~~~~~~-~~h-~~~V~~l~~~~~ 108 (327)
.++.|++|++||+.+++......|...+.+++|+ ++.++++++ ++.|++||+++ +....+ ..| ...+.+++|+|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 3467899999999999987777888999999996 677777776 88999999988 665433 344 467899999999
Q ss_pred CCEEEEEEC--C--CeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEE-EEeCCCeEEEEECC--CCccceeeecccc
Q psy11885 109 VNCILTGSW--D--TSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFV-VGTAGRKVCIWDLR--NMGYIMQRRESSL 179 (327)
Q Consensus 109 ~~~l~sgs~--d--~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~d~~v~iwD~~--~~~~~~~~~~~~~ 179 (327)
++.|++++. + ..|..|++.+++. ..+.....+ ..++++++.++ ++..++.++||+++ +... .. ....
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~--~~~~ 171 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR--LTHG 171 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE--CCCS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE--cccC
Confidence 999999983 3 3455555555543 333332223 45677788776 67789999999864 2221 11 1112
Q ss_pred eeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCC--
Q psy11885 180 KFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSD-- 256 (327)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~d-- 256 (327)
.....++.++|+++.+++++. ++...++.++..... ...+..| ...+.+++|+|++++|++++.+
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS---VERITDS---------AYGDWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---EEECCCC---------SEEEEEEEECTTSSEEEEEEEETT
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCCCC---cEEEecC---------CcccCCeEECCCCCEEEEEEcCCC
Confidence 223467788888877766653 667777766532211 1111111 1257789999999999988765
Q ss_pred ---------CeEEEEeCCCcee--eeecCcCCcceEEEEECCCCCEEEEEEcccc
Q psy11885 257 ---------GYVNIWDGFNKKR--LCQFHRYDTGITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 257 ---------g~i~iWd~~~~~~--~~~~~~~~~~v~~l~fspdg~~la~~~~~~~ 300 (327)
+.|++||+.+++. +..+..+...+.+++|||||++|++++.+..
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred CCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 5699999987754 3344466778899999999999999987643
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=2e-21 Score=181.24 Aligned_cols=262 Identities=13% Similarity=0.060 Sum_probs=181.8
Q ss_pred EEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEc--CCCcee-eeecCC
Q psy11885 22 KFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDF--NTQTET-VIGTHD 97 (327)
Q Consensus 22 ~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~--~~~~~~-~~~~h~ 97 (327)
+|+|+ +.++++++.|++|.+||..++++.........+..++|+ ++.++++++.|++|++||+ .+.+.. .+. +.
T Consensus 144 ~~~p~-~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLP-NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGG-GEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCC-CEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 38884 578888999999999999999876555422337888895 8889999999999999999 565443 333 44
Q ss_pred ccEEEEEEeC----CCCEEEEEEC-CCeEEEEeCCCCceeeeeeCC-----------C-cE--EEEecCCCe-EEEEeCC
Q psy11885 98 QPIRAVEYSD----EVNCILTGSW-DTSVKMWDPRSSRCVGNYTQP-----------D-KV--FTMSLCGEK-FVVGTAG 157 (327)
Q Consensus 98 ~~V~~l~~~~----~~~~l~sgs~-d~~i~lwdl~~~~~~~~~~~~-----------~-~~--~~~~~~~~~-~~~~~~d 157 (327)
..+..++|+| +|++++++++ +++|.+||..++++++.+... . .+ +.+++++.. +++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 5679999999 9999999875 899999999999988876542 1 23 334554544 5566788
Q ss_pred CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885 158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236 (327)
Q Consensus 158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 236 (327)
++|.+||..+.+.+..... ........+.+.|+++.+++++ .++.+.++....+.....+......|...
T Consensus 302 g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~-------- 372 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR-------- 372 (543)
T ss_dssp TEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT--------
T ss_pred CeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC--------
Confidence 9999999987653321111 1111234567888887665544 46677774444332211110000011110
Q ss_pred EeeEEEEecC-CCeEEEec-CCCeEEEEeCCC-------ceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885 237 PVNAISFHQE-YNTFATGG-SDGYVNIWDGFN-------KKRLCQFHRYDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 237 ~v~~v~~spd-~~~lasgs-~dg~i~iWd~~~-------~~~~~~~~~~~~~v~~l~fspdg~~la~~~ 296 (327)
...+ ++|+ +..+++++ .|++|.+||..+ .+.++++..+...+..++|||||++|++++
T Consensus 373 -g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 373 -GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp -CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred -Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 1112 4787 66677775 589999999988 788888888877788999999999999986
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=8.3e-21 Score=177.08 Aligned_cols=269 Identities=11% Similarity=0.062 Sum_probs=182.5
Q ss_pred eeEEEEecCCCcEEEEEECCCcEEEEEC--CCCeEEEEecCCCceeeEEEe-----CCceEEEEe-cCCcEEEEEcCCCc
Q psy11885 18 ITAVKFAPNSNQFLLASSWDCNVSLYDI--TNNNLRLKYAHSDPVLDCCFQ-----DAVHSFSGG-LDCTLKMFDFNTQT 89 (327)
Q Consensus 18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~h~~~v~~~~~~-----~~~~~~sgs-~Dg~i~vwd~~~~~ 89 (327)
+..++|+|+ +++|++++.|++|++||+ .++++.....+...+..++|+ ++.++++++ .+++|.+||..+.+
T Consensus 181 ~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 889999995 579999999999999999 777765555566677899995 688888887 48999999998876
Q ss_pred ee-eeec----------C-CccEEEEEEeCCCCE-EEEEECCCeEEEEeCCCCceee--eeeCC--CcEEEEecCCCeEE
Q psy11885 90 ET-VIGT----------H-DQPIRAVEYSDEVNC-ILTGSWDTSVKMWDPRSSRCVG--NYTQP--DKVFTMSLCGEKFV 152 (327)
Q Consensus 90 ~~-~~~~----------h-~~~V~~l~~~~~~~~-l~sgs~d~~i~lwdl~~~~~~~--~~~~~--~~~~~~~~~~~~~~ 152 (327)
.. .+.. | ...+..+.+++++.. +++...+++|.+||+.+.+.+. .+... .....+++++++++
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 53 2322 2 236889999997765 5566778999999998866544 33322 22467788888776
Q ss_pred EE-eCCCeEEEEECCCCccceeeecccceeeeEEeE-EeeCCCc-eEEEe-ecCeEEEEEccCCcc---cccceeeeeee
Q psy11885 153 VG-TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK-CFPNKQG-YVLSS-IEGRAAVEYLDTGPE---MQKMKYAFKCH 225 (327)
Q Consensus 153 ~~-~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~i~~~~~~~~---~~~~~~~~~~h 225 (327)
++ ..+++|.+||+++++..........+...+... ++|+... ++++. .++.+.++..+.... ..+....+..|
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred EEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence 55 468999999999876543222211111111122 2444333 33333 346666655443111 01222222222
Q ss_pred eeccCCeeeEEEeeEEEEecCCCeEEEec-------CCCeEEEEeCCCceee-eec--------CcCCcceEEEEECCCC
Q psy11885 226 RIKEDGIEKIYPVNAISFHQEYNTFATGG-------SDGYVNIWDGFNKKRL-CQF--------HRYDTGITSLCFSYDG 289 (327)
Q Consensus 226 ~~~~~~~~~~~~v~~v~~spd~~~lasgs-------~dg~i~iWd~~~~~~~-~~~--------~~~~~~v~~l~fspdg 289 (327)
. ..+..++|||+++.|++++ .+++|.+||+.+++.. ..+ ..+...+..++|+|||
T Consensus 420 g---------~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g 490 (543)
T 1nir_A 420 G---------GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 490 (543)
T ss_dssp C---------SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS
T ss_pred C---------CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC
Confidence 1 1245799999999999987 2779999999988766 332 3445679999999999
Q ss_pred CEEEEEE
Q psy11885 290 NVLAIAC 296 (327)
Q Consensus 290 ~~la~~~ 296 (327)
++|.++.
T Consensus 491 ~~~~~s~ 497 (543)
T 1nir_A 491 DEVWFSV 497 (543)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 9999875
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=7e-21 Score=166.44 Aligned_cols=264 Identities=10% Similarity=0.077 Sum_probs=169.7
Q ss_pred EEEEEECCCcEEEEECC-CCe--EEEEecCCCceeeEEEe-CCceEEEEecC-CcEEEEEcC--CCceee---eecCCcc
Q psy11885 30 FLLASSWDCNVSLYDIT-NNN--LRLKYAHSDPVLDCCFQ-DAVHSFSGGLD-CTLKMFDFN--TQTETV---IGTHDQP 99 (327)
Q Consensus 30 ~l~s~~~d~~i~iwd~~-~~~--~~~~~~h~~~v~~~~~~-~~~~~~sgs~D-g~i~vwd~~--~~~~~~---~~~h~~~ 99 (327)
++++++.|+.|++||+. +++ ......+...+.+++|+ ++..+++++.+ +.|++|+++ ++.... +..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 44444779999999995 343 34445677788899995 67778888876 999999997 444322 22333 7
Q ss_pred EEEEEEeCCCCEEEEEEC-CCeEEEEeCC---CCceeeeeeCCC--cEEEEecCCCeEEEEe-CCCeEEEEECCC-Cccc
Q psy11885 100 IRAVEYSDEVNCILTGSW-DTSVKMWDPR---SSRCVGNYTQPD--KVFTMSLCGEKFVVGT-AGRKVCIWDLRN-MGYI 171 (327)
Q Consensus 100 V~~l~~~~~~~~l~sgs~-d~~i~lwdl~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~d~~v~iwD~~~-~~~~ 171 (327)
+..++|+|+++.+++++. ++.|.+||+. +.+.+..+.... ..+.++++++.+++++ .++.|++||+++ .+..
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 889999999998877765 8899999994 334444444332 3356777888888776 889999999986 3321
Q ss_pred ee---eecccceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885 172 MQ---RRESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247 (327)
Q Consensus 172 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~ 247 (327)
.. .........+..+.+.|+++.++++. .++.+.++.++.... ............ ........+..++|+|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g--~~~~~~~~~~~~-~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG--NIECVQTLDMMP-ENFSDTRWAADIHITPDG 242 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS--CCEEEEEEECSC-TTCCSCCCEEEEEECTTS
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--cEEEEeeccccC-ccccccCCccceEECCCC
Confidence 11 01111112346678888877555544 566666655542211 111000000000 000001135579999999
Q ss_pred CeEE-EecCCCeEEEEeCC----CceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885 248 NTFA-TGGSDGYVNIWDGF----NKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 248 ~~la-sgs~dg~i~iWd~~----~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
++|+ +++.++.|++||+. +.+.+..+..+.. +.+++|+|||++|++++..
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~ 297 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQK 297 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTT
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCC
Confidence 8876 55678999999987 2344444443333 7899999999999988753
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=9.7e-21 Score=165.25 Aligned_cols=267 Identities=11% Similarity=0.077 Sum_probs=174.0
Q ss_pred EEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEec-CCcEEEEEcCCCce--eeeec
Q psy11885 21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGL-DCTLKMFDFNTQTE--TVIGT 95 (327)
Q Consensus 21 i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~-Dg~i~vwd~~~~~~--~~~~~ 95 (327)
..|.++++..+++.+.++.|++||..++++.... .+...+ .++|+ ++.++++++. ++.|.+||+.++.. ..+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 3566666667888888999999999998865443 344455 88885 6776776655 89999999988764 34445
Q ss_pred CCccEEEEEEeCCCCEEEEEECCC---eEEEEeCCCCceeeeeeCCCc--EEEEecCCCeEEEE-eCCCe-EEEEECCCC
Q psy11885 96 HDQPIRAVEYSDEVNCILTGSWDT---SVKMWDPRSSRCVGNYTQPDK--VFTMSLCGEKFVVG-TAGRK-VCIWDLRNM 168 (327)
Q Consensus 96 h~~~V~~l~~~~~~~~l~sgs~d~---~i~lwdl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~d~~-v~iwD~~~~ 168 (327)
+..+..+++|+|++++++++..++ .|++||+++++.+..+..... ...++++++.++++ ..++. |.+||+...
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 566655599999999999555553 999999999988877765443 45667777766555 55577 999998754
Q ss_pred ccceeeecc--cceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885 169 GYIMQRRES--SLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245 (327)
Q Consensus 169 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp 245 (327)
+.+...... .....+..+.++|+++.++++. .++.+.++....+.... ....+..+ ..+..++|+|
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~~----------~~~~~~~~sp 230 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAVGTN----------NLPGTIVVSR 230 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEEECS----------SCCCCEEECT
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeeccCC----------CCCceEEECC
Confidence 432111000 1112346778888887555444 45566665444332200 01111110 1356899999
Q ss_pred CCCeEEEec-CCCeEEEEeCCCcee--eeecCc----CCcc---eEEEEECCCCCEEEEEEccc
Q psy11885 246 EYNTFATGG-SDGYVNIWDGFNKKR--LCQFHR----YDTG---ITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 246 d~~~lasgs-~dg~i~iWd~~~~~~--~~~~~~----~~~~---v~~l~fspdg~~la~~~~~~ 299 (327)
||++|++++ .++.|.+||..+++. +..+.. +..+ ...++|||||++|++++...
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence 999776554 578899999988876 322211 1222 35689999999998887654
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=1.2e-20 Score=164.52 Aligned_cols=251 Identities=10% Similarity=0.045 Sum_probs=168.6
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCCC---ceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceee-ee-cC----C
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHSD---PVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETV-IG-TH----D 97 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~---~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~-~~-~h----~ 97 (327)
.+|++++.++.|++||..+++......... .+..++|+ ++..++ +++.++.|.+||+.+++... +. .+ .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 478999999999999999998765555444 57888996 565654 56668899999998876532 22 11 2
Q ss_pred ccEEEEEEeCCCCEEEEEE------------CCCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCCCeEEEE
Q psy11885 98 QPIRAVEYSDEVNCILTGS------------WDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAGRKVCIW 163 (327)
Q Consensus 98 ~~V~~l~~~~~~~~l~sgs------------~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~iw 163 (327)
..+..++|+|+++.++++. .++.|.+||+.+++.+..+.... ..+.++++++.++++ ++.|.+|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 2567899999999998886 67999999999988777665432 345677888888877 6889999
Q ss_pred ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeE----------------------EEEEccCCcccccceee
Q psy11885 164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRA----------------------AVEYLDTGPEMQKMKYA 221 (327)
Q Consensus 164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~i~~~~~~~~~~~~~~~ 221 (327)
|+++++........... ....+.|++..+++....+.. .+..++....... ...
T Consensus 160 d~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~ 235 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWE---AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE 235 (337)
T ss_dssp ETTTTEEEEEECSTTTT---TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE
T ss_pred ECCCCcEeeeeeccccC---CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee
Confidence 99877543221111100 112345555433333222211 2333443321111 111
Q ss_pred eeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 222 FKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 222 ~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
+..+. ..+.+++|+||+++|+++ ++.|++||+.+++.+..+... ..+.+++|+|||++|++++.
T Consensus 236 ~~~~~---------~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~ 299 (337)
T 1pby_B 236 VRIMD---------VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGA 299 (337)
T ss_dssp EEECS---------SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESB
T ss_pred cCCCC---------CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcC
Confidence 11110 135679999999999988 799999999998877766533 45689999999999988754
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.1e-20 Score=181.82 Aligned_cols=265 Identities=12% Similarity=0.032 Sum_probs=178.8
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCC-----Cc
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNT-----QT 89 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~-----~~ 89 (327)
..|++++|+|+ +.++++ .|+.|++||+.+++......+...+.+++|+ ++..++++ .|+.|++||+.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 47999999996 544444 3699999999999877777777788899996 77778774 689999999987 65
Q ss_pred eeee-ecCCcc--------------EEEEEEeCCCCEEEEEE---------------------------------CCCeE
Q psy11885 90 ETVI-GTHDQP--------------IRAVEYSDEVNCILTGS---------------------------------WDTSV 121 (327)
Q Consensus 90 ~~~~-~~h~~~--------------V~~l~~~~~~~~l~sgs---------------------------------~d~~i 121 (327)
...+ ..+... +.++.|+|||+.|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 4432 222222 47899999999999987 45789
Q ss_pred EEEeCCCCceeeeeeC--C-Cc--EEEEecCCCeEEEEeCCC-----eEEEEECCCCccceeeecc-c--ceeeeEEeEE
Q psy11885 122 KMWDPRSSRCVGNYTQ--P-DK--VFTMSLCGEKFVVGTAGR-----KVCIWDLRNMGYIMQRRES-S--LKFQTRCIKC 188 (327)
Q Consensus 122 ~lwdl~~~~~~~~~~~--~-~~--~~~~~~~~~~~~~~~~d~-----~v~iwD~~~~~~~~~~~~~-~--~~~~~~~~~~ 188 (327)
++||+.+++....... + .. ...++++|+.+++++.++ .|.+||+.+++........ . .......+.+
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 9999998876544321 1 22 356677888898887765 8999999876322111110 0 0001134577
Q ss_pred ee--CCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE-EEEecCCCeEEEe-cCCC----eEE
Q psy11885 189 FP--NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA-ISFHQEYNTFATG-GSDG----YVN 260 (327)
Q Consensus 189 ~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~-v~~spd~~~lasg-s~dg----~i~ 260 (327)
+| +++.++++..++...++.++..... ...+..+. +.+.. ++|+|+++.|+.+ +.++ .|+
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~---~~~l~~~~---------~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~ 385 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRL---IRQVTKGE---------WEVTNFAGFDPKGTRLYFESTEASPLERHFY 385 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEETTSCE---EEECCCSS---------SCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred ecCCCCEEEEEEccCCccEEEEEECCCCE---EEecCCCC---------eEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence 88 7765556666677777776632111 11111111 13444 7999999987654 4444 677
Q ss_pred EEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885 261 IWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 261 iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
.||..+++ +..+. +...+.+++|||||++|+.+++.
T Consensus 386 ~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~ 421 (706)
T 2z3z_A 386 CIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQS 421 (706)
T ss_dssp EEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEEC
T ss_pred EEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecC
Confidence 77877655 33443 45678999999999999988653
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.3e-20 Score=181.32 Aligned_cols=270 Identities=11% Similarity=0.073 Sum_probs=180.7
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--EEEecCC-----------------CceeeEEEeCCceEEEEecC
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKYAHS-----------------DPVLDCCFQDAVHSFSGGLD 77 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~h~-----------------~~v~~~~~~~~~~~~sgs~D 77 (327)
.+..+.|. ++ .+++++.|+ | +||+.+++. .....|. ..+.+++|++...++.+ .|
T Consensus 27 ~~~~~~w~--g~-~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~ 100 (706)
T 2z3z_A 27 YVVGLQWM--GD-NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQ 100 (706)
T ss_dssp -CTTCEEE--TT-EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ET
T ss_pred cCCCCcCc--CC-eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-EC
Confidence 35567888 33 455666677 8 999999886 5555543 46889999754655555 47
Q ss_pred CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-----CceeeeeeCC--------------
Q psy11885 78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-----SRCVGNYTQP-------------- 138 (327)
Q Consensus 78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-----~~~~~~~~~~-------------- 138 (327)
++|++||+.++....+..+...+..++|+|||+.|+++ .|+.|++||+.+ ++........
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 99999999888766666677778899999999999985 689999999988 7665433221
Q ss_pred ---CcEEEEecCCCeEEEEe---------------------------------CCCeEEEEECCCCccceeeecccceee
Q psy11885 139 ---DKVFTMSLCGEKFVVGT---------------------------------AGRKVCIWDLRNMGYIMQRRESSLKFQ 182 (327)
Q Consensus 139 ---~~~~~~~~~~~~~~~~~---------------------------------~d~~v~iwD~~~~~~~~~~~~~~~~~~ 182 (327)
.....++++|+.|++++ .+..|.+||+++.+.............
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 13567888999999887 346799999987653211111112223
Q ss_pred eEEeEEeeCCCceEEEeecC---eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec--CCCeEEEecCCC
Q psy11885 183 TRCIKCFPNKQGYVLSSIEG---RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ--EYNTFATGGSDG 257 (327)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp--d~~~lasgs~dg 257 (327)
...+.++|+++.+++++.+. ...++.|+..... ........+.. . ....+.+++|+| ||++|++++.|+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~---~--~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-FVRTLFVETDK---H--YVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEEEEECS---S--CCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEEEccCC---C--eECccCCceeecCCCCEEEEEEccCC
Confidence 56788899988777766543 2355556543320 11111110000 0 001246789999 999999999999
Q ss_pred eEEEEeCC-CceeeeecCcCCcceEE-EEECCCCCEEEEEEccc
Q psy11885 258 YVNIWDGF-NKKRLCQFHRYDTGITS-LCFSYDGNVLAIACSYN 299 (327)
Q Consensus 258 ~i~iWd~~-~~~~~~~~~~~~~~v~~-l~fspdg~~la~~~~~~ 299 (327)
.++||++. +++.+..+..+...+.+ ++|||||+.|++++..+
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 99999876 56667777777777776 79999999998887653
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.4e-20 Score=181.34 Aligned_cols=270 Identities=8% Similarity=0.031 Sum_probs=178.6
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCC---ceeeEEEe-CCceEEEEecC---------CcEE
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSD---PVLDCCFQ-DAVHSFSGGLD---------CTLK 81 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~---~v~~~~~~-~~~~~~sgs~D---------g~i~ 81 (327)
..+.+++|+|++ +++++ +.|++|++||+.+++...... |.. .|.+++|+ ++.++++++.+ +.+.
T Consensus 17 ~~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWISDT-EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSSSS-CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcCCC-cEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 457889999965 56665 789999999999988554444 443 48899995 78889888764 7788
Q ss_pred EEEcCCCceeeee---cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-------------------
Q psy11885 82 MFDFNTQTETVIG---THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD------------------- 139 (327)
Q Consensus 82 vwd~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~------------------- 139 (327)
+||++++....+. .|...+..++|+|||+.|+.++. +.|++||+.+++.......+.
T Consensus 95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 9999987654443 34455889999999999999886 799999999887655433211
Q ss_pred --cEEEEecCCCeEEEEeCCC----------------------------------eEEEEECCCCccceeeeccc----c
Q psy11885 140 --KVFTMSLCGEKFVVGTAGR----------------------------------KVCIWDLRNMGYIMQRRESS----L 179 (327)
Q Consensus 140 --~~~~~~~~~~~~~~~~~d~----------------------------------~v~iwD~~~~~~~~~~~~~~----~ 179 (327)
....++++|+.|++++.++ .|++||+.+.+......... .
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 2467888899998887543 79999998765322111110 1
Q ss_pred eeeeEEeEEeeCCCceEEEeec--CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe----eEEEEecCCCeEEE-
Q psy11885 180 KFQTRCIKCFPNKQGYVLSSIE--GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV----NAISFHQEYNTFAT- 252 (327)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v----~~v~~spd~~~las- 252 (327)
......+.++|+++.++..... ....++.|+..... ....+..+.. + .+ ..++|+|||+.|+.
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~---~-----~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV--CTKKHEDESE---A-----WLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC--EEEEEEEECS---S-----CCCCCCCCCEECTTSCSEEEE
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc--ceEEEEeccC---C-----EEeccCCCceEcCCCCeEEEE
Confidence 2234567888888755554433 34556666643321 1111111100 0 12 26899999998875
Q ss_pred -ecCCC------eEEEEe-CCCcee--eeecCcCCcceEE-EEECCCCCEEEEEEcc
Q psy11885 253 -GGSDG------YVNIWD-GFNKKR--LCQFHRYDTGITS-LCFSYDGNVLAIACSY 298 (327)
Q Consensus 253 -gs~dg------~i~iWd-~~~~~~--~~~~~~~~~~v~~-l~fspdg~~la~~~~~ 298 (327)
+..++ .|++|| ..+++. ...+......+.. ++|||||+.|+..+..
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred EecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcC
Confidence 45667 567777 333331 4455443444554 6999999999877654
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=5.3e-20 Score=173.31 Aligned_cols=269 Identities=11% Similarity=0.052 Sum_probs=177.2
Q ss_pred CCCeeEEEEecCCCcEEEEEEC-CCcEEEEECCCCeEEEEecCC-CceeeEEEeCCceEEEEec---CCcEEEEEcCC--
Q psy11885 15 EDGITAVKFAPNSNQFLLASSW-DCNVSLYDITNNNLRLKYAHS-DPVLDCCFQDAVHSFSGGL---DCTLKMFDFNT-- 87 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~h~-~~v~~~~~~~~~~~~sgs~---Dg~i~vwd~~~-- 87 (327)
...|.+++|+|| ++.||.++. |++++||++.+++......|. ..+..++|+++..+++++. +...++|.++.
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 347999999996 467787776 999999999888876666665 5788888975566666665 55667766543
Q ss_pred C-ceeeeecCCccEEEEEEeCCCCE-EEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCC----CeEE
Q psy11885 88 Q-TETVIGTHDQPIRAVEYSDEVNC-ILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAG----RKVC 161 (327)
Q Consensus 88 ~-~~~~~~~h~~~V~~l~~~~~~~~-l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~v~ 161 (327)
. ....+... ..+...+|+|+++. +++.+.++.+.+||+.+++.......+.....++++|+.+++++.+ +.|+
T Consensus 100 ~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~ 178 (582)
T 3o4h_A 100 PGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLF 178 (582)
T ss_dssp TTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred CCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEE
Confidence 2 22222222 23446678888753 3444444555699999887665555455567788999999987776 7899
Q ss_pred EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE
Q psy11885 162 IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI 241 (327)
Q Consensus 162 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v 241 (327)
+||+.+++.. .. ..........+++|+++.++.+..++...++.|+....... .+..|........ .......
T Consensus 179 ~~d~~~g~~~-~l--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~-~~~~~~~ 251 (582)
T 3o4h_A 179 TSNLSSGGLR-VF--DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE---DLELPSKDFSSYR-PTAITWL 251 (582)
T ss_dssp EEETTTCCCE-EE--CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE---ECCCSCSHHHHHC-CSEEEEE
T ss_pred EEcCCCCCce-Ee--ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE---EccCCCcChhhhh-hccccce
Confidence 9999876532 11 11222346778999998888666666556667775432211 1122211000000 0011233
Q ss_pred EEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 242 ~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
+|+|||.++++++.|+++++|++ ++.+.. ....+.+++|| ||+++++++++
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEET
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCC
Confidence 49999988899999999999998 665542 33568899999 99999888764
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=2.4e-20 Score=180.41 Aligned_cols=263 Identities=12% Similarity=0.081 Sum_probs=181.1
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCC---eEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceee
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNN---NLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV 92 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~ 92 (327)
.|.+++|||+ +++|++++. +.|++||+.++ +......|...+..++|+ ++.++++++ ++.|++||+.++....
T Consensus 110 ~v~~~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CcceeEECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 4889999996 577887775 99999999988 666666777889999995 777788777 6799999998876543
Q ss_pred ee-cCCcc----------------EEEEEEeCCCCEEEEEECCC---------------------------------eEE
Q psy11885 93 IG-THDQP----------------IRAVEYSDEVNCILTGSWDT---------------------------------SVK 122 (327)
Q Consensus 93 ~~-~h~~~----------------V~~l~~~~~~~~l~sgs~d~---------------------------------~i~ 122 (327)
+. .+... +..+.|+|||+.|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 32 23222 47799999999999988776 889
Q ss_pred EEeCCC-CceeeeeeC--C-C--cEEEEecCCCeEEEEeC-----CCeEEEEECCCCccceeeeccccee--eeEEeEEe
Q psy11885 123 MWDPRS-SRCVGNYTQ--P-D--KVFTMSLCGEKFVVGTA-----GRKVCIWDLRNMGYIMQRRESSLKF--QTRCIKCF 189 (327)
Q Consensus 123 lwdl~~-~~~~~~~~~--~-~--~~~~~~~~~~~~~~~~~-----d~~v~iwD~~~~~~~~~~~~~~~~~--~~~~~~~~ 189 (327)
+||+.+ ++....... . . ....+ ++|+.+++++. +..|.+||+.+++............ ....+.++
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 775443221 1 1 23567 88888887653 4679999998765322111111000 12356788
Q ss_pred eCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEE-EEecCCCeEE-EecCCC--eEEEEeCC
Q psy11885 190 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI-SFHQEYNTFA-TGGSDG--YVNIWDGF 265 (327)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v-~~spd~~~la-sgs~dg--~i~iWd~~ 265 (327)
|+++.++++..++...++.++.... ...+..|. ..+..+ +|+|+++.|+ +++.++ +++||++.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~----~~~l~~~~---------~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK----AAALTHGN---------WSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC----EEESCCSS---------SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC----eeeeeecc---------eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 8887556666667777877764321 11111111 135555 6999998775 555565 89999875
Q ss_pred C-ceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 266 N-KKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 266 ~-~~~~~~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
. ++.+..+.. ...+.+++|||||++||..++
T Consensus 413 ~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 413 LQGGQPQRLSK-APGMHSASFARNASVYVDSWS 444 (741)
T ss_dssp TTCCCCEECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred cCCCCeeeccc-CCCceEEEECCCCCEEEEEec
Confidence 3 444555554 556889999999999998864
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=5.6e-19 Score=155.29 Aligned_cols=266 Identities=9% Similarity=0.057 Sum_probs=164.6
Q ss_pred EEEEEE----CCCcEEEEECC--CCeEEE--EecCCCceeeEEEe-CCceEEEEec---CCcEEEEEcCCCceeee---e
Q psy11885 30 FLLASS----WDCNVSLYDIT--NNNLRL--KYAHSDPVLDCCFQ-DAVHSFSGGL---DCTLKMFDFNTQTETVI---G 94 (327)
Q Consensus 30 ~l~s~~----~d~~i~iwd~~--~~~~~~--~~~h~~~v~~~~~~-~~~~~~sgs~---Dg~i~vwd~~~~~~~~~---~ 94 (327)
.+++|+ .++.|.+|++. ++++.. ...+...+..++|+ ++. +++++. ++.|.+|++.++....+ .
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 455553 34567777664 566432 33455667788996 555 776655 68999999977654332 3
Q ss_pred cCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCC-Cc--eeeeeeCC------------CcEEEEecCCCeEEEEeCCC
Q psy11885 95 THDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRS-SR--CVGNYTQP------------DKVFTMSLCGEKFVVGTAGR 158 (327)
Q Consensus 95 ~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~-~~--~~~~~~~~------------~~~~~~~~~~~~~~~~~~d~ 158 (327)
.+...+..++|+|+|++|++++ .+++|++||+.. ++ .+..+... ...+.++++++.+++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 4667788999999999999888 679999999963 32 22333221 12366778888555556788
Q ss_pred eEEEEECCCCccceeee--cccceeeeEEeEEeeCCCceEEE-eecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885 159 KVCIWDLRNMGYIMQRR--ESSLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI 235 (327)
Q Consensus 159 ~v~iwD~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 235 (327)
.|++||+.......... .......+..+++.|+++.++++ ..++.+.++.++...........+.. .. .+....
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~--~~-~~~~~~ 239 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT--IP-ADYTAH 239 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES--SC-TTCCSC
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee--cC-CCCCCC
Confidence 99999998322211111 11111134567888888755543 44566666555532111111111110 00 000001
Q ss_pred EEeeEEEEecCCCeE-EEecCCCeEEEEeCCC---ceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885 236 YPVNAISFHQEYNTF-ATGGSDGYVNIWDGFN---KKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 236 ~~v~~v~~spd~~~l-asgs~dg~i~iWd~~~---~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~ 299 (327)
..+..++|+|||++| ++...++.|.+|++.. .+.+..+..+...+..++|||||++|++++...
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence 246789999999987 5566689999999862 244455554445678999999999999987653
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=9.3e-21 Score=172.08 Aligned_cols=191 Identities=12% Similarity=0.120 Sum_probs=138.0
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCC-----------CeEE-----EEecCCCceeeEEEe-CCceEE----
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITN-----------NNLR-----LKYAHSDPVLDCCFQ-DAVHSF---- 72 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-----------~~~~-----~~~~h~~~v~~~~~~-~~~~~~---- 72 (327)
+...++.++++++ +.++++++.|+ +++|+... .... ....+...|.+++|+ ++.+++
T Consensus 35 ~~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 35 PKERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CCSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence 3456899999995 56888888887 89987531 1111 123466789999995 778888
Q ss_pred EEecCCcEEEEEcCCC--------c----eeeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCCC
Q psy11885 73 SGGLDCTLKMFDFNTQ--------T----ETVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQPD 139 (327)
Q Consensus 73 sgs~Dg~i~vwd~~~~--------~----~~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~ 139 (327)
+|+.|++|++||+++. + ...+.+|...|.+++|+|+ ++.|++++.|++|++||++++..+..
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~----- 187 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA----- 187 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE-----
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee-----
Confidence 8899999999998653 1 1234568999999999997 78899999999999999865321000
Q ss_pred cEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce
Q psy11885 140 KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK 219 (327)
Q Consensus 140 ~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 219 (327)
. .
T Consensus 188 ------------------------------------------------~--------------------~---------- 189 (434)
T 2oit_A 188 ------------------------------------------------T--------------------L---------- 189 (434)
T ss_dssp ------------------------------------------------E--------------------E----------
T ss_pred ------------------------------------------------c--------------------c----------
Confidence 0 0
Q ss_pred eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-------CCcceEEEEECCCCCEE
Q psy11885 220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-------YDTGITSLCFSYDGNVL 292 (327)
Q Consensus 220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-------~~~~v~~l~fspdg~~l 292 (327)
.|. ..|.+++|+|+|++||+|+.||+|++||.+ ++....+.. |...|.+++|++++.++
T Consensus 190 ----~~~---------~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 190 ----PST---------VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA 255 (434)
T ss_dssp ----CGG---------GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred ----CCC---------CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence 000 036789999999999999999999999987 444433322 22379999999999988
Q ss_pred EEEEccccccC
Q psy11885 293 AIACSYNYELE 303 (327)
Q Consensus 293 a~~~~~~~~~~ 303 (327)
++.+..+..++
T Consensus 256 ~~~~~~dg~~~ 266 (434)
T 2oit_A 256 IVYAAADGTLE 266 (434)
T ss_dssp EEEEETTCCSS
T ss_pred EEEccCCCccC
Confidence 77665543333
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=7.1e-19 Score=153.62 Aligned_cols=266 Identities=8% Similarity=0.055 Sum_probs=164.3
Q ss_pred CCCCeeEEEEecCCCcEEEEEECC-CcEEEEECC--CCeEE--EEecCCCceeeEEEe-CCceEEEEec-CCcEEEEEcC
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWD-CNVSLYDIT--NNNLR--LKYAHSDPVLDCCFQ-DAVHSFSGGL-DCTLKMFDFN 86 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d-~~i~iwd~~--~~~~~--~~~~h~~~v~~~~~~-~~~~~~sgs~-Dg~i~vwd~~ 86 (327)
+...+.+++|+|+ +++|++++.+ +.|++|++. +++.. ........+..++|+ ++..+++++. ++.|++||++
T Consensus 36 ~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 4567899999996 5677777776 999999997 55533 223333477888995 6776766654 8899999995
Q ss_pred CCc---eeeeecCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCC-Cceee----eeeC--CC--cEEEEecCCCeEEE
Q psy11885 87 TQT---ETVIGTHDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRS-SRCVG----NYTQ--PD--KVFTMSLCGEKFVV 153 (327)
Q Consensus 87 ~~~---~~~~~~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~-~~~~~----~~~~--~~--~~~~~~~~~~~~~~ 153 (327)
.+. ..........+.+++|+|+++.+++++ .++.|++||+.+ ++... .+.. .. ..+.++++++.+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~ 194 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC 194 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEE
Confidence 222 222222334588899999999888887 899999999987 54422 2221 11 23557777887665
Q ss_pred Ee-CCCeEEEEECCC--Cccceeeecccc------eeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccceeeee
Q psy11885 154 GT-AGRKVCIWDLRN--MGYIMQRRESSL------KFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMKYAFK 223 (327)
Q Consensus 154 ~~-~d~~v~iwD~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 223 (327)
++ .++.|++||++. ............ ......+++.|+++.++++. .++.+.++..+...........+.
T Consensus 195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~ 274 (343)
T 1ri6_A 195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP 274 (343)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec
Confidence 54 789999999953 221101111100 11234577888876665444 456666655442111111111111
Q ss_pred eeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeC--CCce--eeeecCcCCcceEEEEECCCCCE
Q psy11885 224 CHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDG--FNKK--RLCQFHRYDTGITSLCFSYDGNV 291 (327)
Q Consensus 224 ~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~--~~~~--~~~~~~~~~~~v~~l~fspdg~~ 291 (327)
.+ ..+.+++|+|++++|++++ .++.|.+|++ .+++ .+..+... ....+++|.|+.+.
T Consensus 275 ~~----------~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 275 TE----------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEGG 336 (343)
T ss_dssp CS----------SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC--
T ss_pred CC----------CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccCC
Confidence 10 0256899999999888777 5799999954 4553 33344332 23468888886543
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=1.3e-19 Score=158.04 Aligned_cols=241 Identities=10% Similarity=-0.005 Sum_probs=160.8
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC------CceeeEEEe-CCceEEEEe------------cC
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS------DPVLDCCFQ-DAVHSFSGG------------LD 77 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~------~~v~~~~~~-~~~~~~sgs------------~D 77 (327)
.+..++|+|++..++++++.++.|.+||+.+++........ ..+..++|+ ++..+++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 47899999975445566667889999999988865443322 256778885 677888775 57
Q ss_pred CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEe
Q psy11885 78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGT 155 (327)
Q Consensus 78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 155 (327)
+.|.+||+.+++..........+..++|+|++++++++ ++.|.+||+++++....+.... ....+++++..+++..
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 192 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192 (337)
T ss_dssp CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeec
Confidence 99999999877654322234457889999999988887 6899999999988776655332 2234555555444332
Q ss_pred C-CC-----------------------eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccC
Q psy11885 156 A-GR-----------------------KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDT 211 (327)
Q Consensus 156 ~-d~-----------------------~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 211 (327)
. ++ .|.+||+++.+.. .............+++.|+++.++++ ++.+.++....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred cCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence 2 22 5789999876543 11111111223567788887766665 45555544332
Q ss_pred CcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC
Q psy11885 212 GPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY 276 (327)
Q Consensus 212 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~ 276 (327)
... ...+... ..+.+++|+|++++|++++.++.|++||+.+++.+..+..+
T Consensus 270 ~~~----~~~~~~~----------~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 270 NAS----IKRVPLP----------HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TEE----EEEEECS----------SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CcC----cceecCC----------CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 221 1111110 13578999999999999999999999999998887776543
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=5.5e-19 Score=177.15 Aligned_cols=274 Identities=9% Similarity=0.002 Sum_probs=186.1
Q ss_pred CCeeEEEEe-cCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC-ceeeEEEeCCceEEEEecCCcEE-EEEcCCCceee
Q psy11885 16 DGITAVKFA-PNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD-PVLDCCFQDAVHSFSGGLDCTLK-MFDFNTQTETV 92 (327)
Q Consensus 16 ~~I~~i~fs-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-~v~~~~~~~~~~~~sgs~Dg~i~-vwd~~~~~~~~ 92 (327)
+.|.+++|+ |+ +++|++++ ++.|.+|++.+++......|.. .+..++|+++..+++++.+..+. +||+.++....
T Consensus 296 ~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~ 373 (1045)
T 1k32_A 296 PSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK 373 (1045)
T ss_dssp GGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred cccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE
Confidence 468999999 96 46777776 8899999999888666666766 78888888667888888888888 88998776655
Q ss_pred eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecCCCeEEEEeCCC----------e
Q psy11885 93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLCGEKFVVGTAGR----------K 159 (327)
Q Consensus 93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~----------~ 159 (327)
+..|...+..++|+|||+.|++++.++.|++||+++++.......+ .....++++|+.+++++.++ .
T Consensus 374 l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~ 453 (1045)
T 1k32_A 374 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 453 (1045)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCe
Confidence 5577788999999999999999999999999999998876655332 23467888899888876644 8
Q ss_pred EEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcc----------------c-cc--ce-
Q psy11885 160 VCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE----------------M-QK--MK- 219 (327)
Q Consensus 160 v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------~-~~--~~- 219 (327)
|++||+.+.+. .... ........+.++|+++.++..+..+...++....... . .. +.
T Consensus 454 i~l~d~~~g~~-~~l~--~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1045)
T 1k32_A 454 IHVYDMEGRKI-FAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP 530 (1045)
T ss_dssp EEEEETTTTEE-EECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC
T ss_pred EEEEECCCCcE-EEee--CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCc
Confidence 99999987652 1111 1112234567888888777666543322211000000 0 00 00
Q ss_pred ---------eeeeeeeeccCCe-eeEEEeeEEEEecCCCeEEE-------------ecCCCeEEEEeCCCceeeeecCcC
Q psy11885 220 ---------YAFKCHRIKEDGI-EKIYPVNAISFHQEYNTFAT-------------GGSDGYVNIWDGFNKKRLCQFHRY 276 (327)
Q Consensus 220 ---------~~~~~h~~~~~~~-~~~~~v~~v~~spd~~~las-------------gs~dg~i~iWd~~~~~~~~~~~~~ 276 (327)
..+.........+ .+...+..++++||+.++++ .+.+..|++||+.+++.. .+.
T Consensus 531 ~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~-- 607 (1045)
T 1k32_A 531 RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK-- 607 (1045)
T ss_dssp GGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE--
T ss_pred CccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee--
Confidence 0000000000000 01124678999999988885 123457888998887643 232
Q ss_pred CcceEEEEECCCCCEEEEEEcc
Q psy11885 277 DTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 277 ~~~v~~l~fspdg~~la~~~~~ 298 (327)
..+.+++|||||++|++++.+
T Consensus 608 -~~v~~~~~S~DG~~l~~~~~~ 628 (1045)
T 1k32_A 608 -NNLTDLRLSADRKTVMVRKDD 628 (1045)
T ss_dssp -EEEEEEEECTTSCEEEEEETT
T ss_pred -cCcceEEECCCCCEEEEEcCC
Confidence 568899999999999998755
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=3.6e-19 Score=171.57 Aligned_cols=270 Identities=7% Similarity=-0.009 Sum_probs=173.9
Q ss_pred CeeEEEEecCCCcEEEEEECC---------CcEEEEECCCCeEEEEec---CCCceeeEEEe-CCceEEEEecCCcEEEE
Q psy11885 17 GITAVKFAPNSNQFLLASSWD---------CNVSLYDITNNNLRLKYA---HSDPVLDCCFQ-DAVHSFSGGLDCTLKMF 83 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~---h~~~v~~~~~~-~~~~~~sgs~Dg~i~vw 83 (327)
.|.+++|||+ +++|++++.+ +.+.+||+.+++...... |...+..++|+ ++..+++++. +.|++|
T Consensus 62 ~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCC-CCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 5999999996 5788888764 788899999887533332 33447888995 7888888874 899999
Q ss_pred EcCCCceeee-ecCCcc------------------EEEEEEeCCCCEEEEEECCC-------------------------
Q psy11885 84 DFNTQTETVI-GTHDQP------------------IRAVEYSDEVNCILTGSWDT------------------------- 119 (327)
Q Consensus 84 d~~~~~~~~~-~~h~~~------------------V~~l~~~~~~~~l~sgs~d~------------------------- 119 (327)
|+.++....+ ..+... +.+++|+|||+.|++++.|+
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 9988765433 333322 27899999999999987653
Q ss_pred ---------eEEEEeCCCCceeeeeeCC-------Cc--EEEEecCCCeEEEEeC----CCeEEEEECCCCccceeeecc
Q psy11885 120 ---------SVKMWDPRSSRCVGNYTQP-------DK--VFTMSLCGEKFVVGTA----GRKVCIWDLRNMGYIMQRRES 177 (327)
Q Consensus 120 ---------~i~lwdl~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~----d~~v~iwD~~~~~~~~~~~~~ 177 (327)
+|++||+.++++...+..+ .. ...++++|+.+++... +..|++||+.+++........
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 8999999988764544432 12 2456777877766543 257999999876532211111
Q ss_pred ccee-e--eEEeEEeeCCCceEEE-e-ecC----eEEEEEcc-CCcccccceeeeeeeeeccCCeeeEEEe-eEEEEecC
Q psy11885 178 SLKF-Q--TRCIKCFPNKQGYVLS-S-IEG----RAAVEYLD-TGPEMQKMKYAFKCHRIKEDGIEKIYPV-NAISFHQE 246 (327)
Q Consensus 178 ~~~~-~--~~~~~~~~~~~~~~~~-~-~~~----~~~i~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~v-~~v~~spd 246 (327)
.... . ...+.++|+++.++.. + .++ ...++.++ ...........+..+ . ..+ ..++|+||
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-----~----~~~~~~~~~spd 370 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-----D----WDVTKILAYDEK 370 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-----S----SCEEEEEEEETT
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-----C----eEEEeeeEEcCC
Confidence 0000 0 1256788888877654 3 344 45677776 222110000011100 0 012 33699999
Q ss_pred CCeEEEecCC---CeEEEEeCCCc--eeeeecCc---CCcceEEEEECCCCCEEEEEEc
Q psy11885 247 YNTFATGGSD---GYVNIWDGFNK--KRLCQFHR---YDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 247 ~~~lasgs~d---g~i~iWd~~~~--~~~~~~~~---~~~~v~~l~fspdg~~la~~~~ 297 (327)
++.|+..+.+ +.++||++... .....+.. +...+..++|||||++||..++
T Consensus 371 g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 371 GNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp TTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred CCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 9999755544 78999987532 12333432 4556889999999999998754
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=1.4e-18 Score=174.27 Aligned_cols=266 Identities=12% Similarity=0.035 Sum_probs=185.4
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECC--CCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDIT--NNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
..|.+.+.+++|+++ .++++++.|++++||.+. ++.......|. .+...+|+ ++..+++++ ++.|.+||++..
T Consensus 200 ~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~ 275 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE 275 (1045)
T ss_dssp ECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC
T ss_pred cCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce
Confidence 456788999999984 677788888999999865 33344333444 35566774 777788774 999999998544
Q ss_pred ceeeeec-----------CCccEEEEEEe-CCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEEEEec-CCCeEEEE
Q psy11885 89 TETVIGT-----------HDQPIRAVEYS-DEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVFTMSL-CGEKFVVG 154 (327)
Q Consensus 89 ~~~~~~~-----------h~~~V~~l~~~-~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 154 (327)
....+.. |...+..++|+ |+|+.|++++ ++.|.+|++.+++......... .+..+.+ +++.++++
T Consensus 276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~ 354 (1045)
T 1k32_A 276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHG 354 (1045)
T ss_dssp CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEE
T ss_pred EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEE
Confidence 3332322 34468999999 9999999888 7899999998876544322233 3333333 56678888
Q ss_pred eCCCeEE-EEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCee
Q psy11885 155 TAGRKVC-IWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233 (327)
Q Consensus 155 ~~d~~v~-iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~ 233 (327)
+.++.+. +||+.+.+.. ... ........++++|+++.++.++.++.+.++....+.. ......|.
T Consensus 355 s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~----~~~~~~~~------- 420 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP----TVIERSRE------- 420 (1045)
T ss_dssp ETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEECSS-------
T ss_pred ECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce----EEeccCCC-------
Confidence 8888888 9998765421 111 1222346778899988888887777666654443321 11111121
Q ss_pred eEEEeeEEEEecCCCeEEEecCCC----------eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885 234 KIYPVNAISFHQEYNTFATGGSDG----------YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 234 ~~~~v~~v~~spd~~~lasgs~dg----------~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~ 299 (327)
..+.+++|||||++||+++.++ .|++||+.+++ +..+..+...+.+++|||||++|++++...
T Consensus 421 --~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 421 --AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp --SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred --CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 1467899999999999887644 89999998877 666777777789999999999999987643
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=5.8e-18 Score=148.30 Aligned_cols=260 Identities=10% Similarity=0.069 Sum_probs=159.0
Q ss_pred EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC--ceeeEEEe-CCceEE-EEecCCcEEEEEcCCCcee-eee
Q psy11885 20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD--PVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTET-VIG 94 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~--~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~-~~~ 94 (327)
.+++++ ++.++++++.++.|++||..+++......... .+..++|+ ++..++ +++.++.|.+||+.+++.. .+.
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356777 46789999999999999999998655554333 56788885 566554 5567899999999877653 232
Q ss_pred -cC-----CccEEEEEEeCCCCEEEEEECC------------CeEEEEeCCCCce---eeeeeCCCc--EEEEecCCCeE
Q psy11885 95 -TH-----DQPIRAVEYSDEVNCILTGSWD------------TSVKMWDPRSSRC---VGNYTQPDK--VFTMSLCGEKF 151 (327)
Q Consensus 95 -~h-----~~~V~~l~~~~~~~~l~sgs~d------------~~i~lwdl~~~~~---~~~~~~~~~--~~~~~~~~~~~ 151 (327)
.+ ...+..++|+|+|+++++++.+ +.|.+||+++++. +..+..+.. .+.+++++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2236789999999999998865 9999999988543 333333332 345777787 6
Q ss_pred EEEeCCCeEEEEECCCCccceeeecccc--e--------------------eeeEEeEEeeCCCceEEEeecCeEEEEEc
Q psy11885 152 VVGTAGRKVCIWDLRNMGYIMQRRESSL--K--------------------FQTRCIKCFPNKQGYVLSSIEGRAAVEYL 209 (327)
Q Consensus 152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~--~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 209 (327)
++++ +.|.+||+++.+.......... + ..+..+.+.++....... ..+...+..+
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~ 238 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT-ADLLYGYLSV 238 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC-CEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc-cccceeEEEE
Confidence 6654 3499999987664322111100 0 011112222111000000 0000011111
Q ss_pred cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec-CCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885 210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 288 (327)
Q Consensus 210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-d~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd 288 (327)
+..... .....+..+ + ..+..++|+| ++++++++ ++.|.+||+.+++.+..+... ..+.+++||||
T Consensus 239 ~~~~~~-~~~~~~~~~-----~----~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~d 305 (349)
T 1jmx_B 239 DLKTGK-THTQEFADL-----T----ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKK 305 (349)
T ss_dssp ETTTCC-EEEEEEEEC-----S----SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSS
T ss_pred eccCCc-EEecccccC-----C----CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCC
Confidence 211110 000000000 0 1356789999 99999988 889999999998877766432 34679999999
Q ss_pred CCEEEEEEc
Q psy11885 289 GNVLAIACS 297 (327)
Q Consensus 289 g~~la~~~~ 297 (327)
|++|++++.
T Consensus 306 g~~l~~~~~ 314 (349)
T 1jmx_B 306 GDKLYLGGT 314 (349)
T ss_dssp SSCEEEESB
T ss_pred CCEEEEecC
Confidence 999988644
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=1.5e-18 Score=148.02 Aligned_cols=210 Identities=10% Similarity=0.055 Sum_probs=147.8
Q ss_pred EEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-CceeeeeeCC--C--cEEEEecC
Q psy11885 73 SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-SRCVGNYTQP--D--KVFTMSLC 147 (327)
Q Consensus 73 sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~~~--~--~~~~~~~~ 147 (327)
+++.|++|++||+.++....+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ . ....++++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 45679999999999887777777889999999999999999987 78999999998 7766554333 2 23677888
Q ss_pred CCeEEEEe--CCCeEEEE--ECCCCccceeeecccceeeeEEeEEeeCCCceE-EEeecCeEEEEEccCCcccccceeee
Q psy11885 148 GEKFVVGT--AGRKVCIW--DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYV-LSSIEGRAAVEYLDTGPEMQKMKYAF 222 (327)
Q Consensus 148 ~~~~~~~~--~d~~v~iw--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~ 222 (327)
+..+++++ .++..+|| |+.+... ..... . .....+.++|+++.++ ++..++...++.++...... ..+
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~---~~~ 168 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK-N--LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE---TRL 168 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCC-EECCS-S--SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE---EEC
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCce-EEeec-C--CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc---eEc
Confidence 99999888 33445555 5444331 11111 1 1245667888887766 55667777777665432111 111
Q ss_pred eeeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeCC-CceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885 223 KCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDGF-NKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 223 ~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~~-~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~ 299 (327)
..+. ..+.+++|+|+++.|+.++ .++.++||++. .+..+..+..+...+.+++|||||++|++++...
T Consensus 169 ~~~~---------~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 169 THGE---------GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp CCSS---------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred ccCC---------CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence 1111 1467899999999888665 58999999876 4556667777777899999999999999987653
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.82 E-value=4.7e-17 Score=141.76 Aligned_cols=267 Identities=8% Similarity=-0.001 Sum_probs=157.7
Q ss_pred CCCCeeEEEEecCCCcEEEEEE-CCCcEEEEECCCCeE-EEEe-cCCCceeeEEEe-CCceEEEEecCC---cEEEEEcC
Q psy11885 14 PEDGITAVKFAPNSNQFLLASS-WDCNVSLYDITNNNL-RLKY-AHSDPVLDCCFQ-DAVHSFSGGLDC---TLKMFDFN 86 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~-~d~~i~iwd~~~~~~-~~~~-~h~~~v~~~~~~-~~~~~~sgs~Dg---~i~vwd~~ 86 (327)
+...+ .++|+|++ +++++++ .++.|.+||..++++ .... .+..+..+++|+ ++.+++++..++ .|.+||++
T Consensus 39 ~~~~~-~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 39 GYDFV-DTAITSDC-SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp CCCEE-EEEECSSS-CEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred cCCcc-eEEEcCCC-CEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence 34556 99999965 5555555 489999999998875 4434 344444448885 777788555553 89999998
Q ss_pred CCceeeeecCCccEEEEEEeCCCCEEEE-EECCCe-EEEEeCCCCcee-----eeeeCC--CcEEEEecCCCeEEEE-eC
Q psy11885 87 TQTETVIGTHDQPIRAVEYSDEVNCILT-GSWDTS-VKMWDPRSSRCV-----GNYTQP--DKVFTMSLCGEKFVVG-TA 156 (327)
Q Consensus 87 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s-gs~d~~-i~lwdl~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~-~~ 156 (327)
++.......+......++|+|+|+++++ ...++. |.+|++.....+ ..+... ...+.++++++.++++ ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 117 KNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp TTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT
T ss_pred CCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC
Confidence 8765433333445689999999986554 456688 999998754332 111211 2345677778866554 46
Q ss_pred CCeEEEEECCCCcc---ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCee
Q psy11885 157 GRKVCIWDLRNMGY---IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233 (327)
Q Consensus 157 d~~v~iwD~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~ 233 (327)
++.|++||+++.+. +.... ....+..++++|+++.++++.. +...+..++...........+..+ ..... .
T Consensus 197 ~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~-~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~-~ 270 (331)
T 3u4y_A 197 GNSIGILETQNPENITLLNAVG---TNNLPGTIVVSRDGSTVYVLTE-STVDVFNFNQLSGTLSFVKSFGHG-LLIDP-R 270 (331)
T ss_dssp TTEEEEEECSSTTSCEEEEEEE---CSSCCCCEEECTTSSEEEEECS-SEEEEEEEETTTTEEEEEEEEECC-CCCCC-G
T ss_pred CCeEEEEECCCCcccceeeecc---CCCCCceEEECCCCCEEEEEEc-CCCEEEEEECCCCceeeecccccc-cccCC-C
Confidence 88999999987664 22211 1123456778888875555543 233344455432211111111110 00000 0
Q ss_pred eEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCC
Q psy11885 234 KIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDG 289 (327)
Q Consensus 234 ~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg 289 (327)
.....+.++|+||+++|+++ ..++.|++||+.+.. +..+...+..-....++||+
T Consensus 271 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 271 PLFGANQMALNKTETKLFISANISRELKVFTISGKV-VGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred CcccccceEECCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccCCeEEECCcc
Confidence 00012568999999988654 456799999997754 33333333222234555554
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=2.8e-16 Score=139.88 Aligned_cols=283 Identities=10% Similarity=0.040 Sum_probs=175.5
Q ss_pred EEEecCCCcEEEEEEC-CC--cEEEEECCCCeEEEEec-CCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceee-ee
Q psy11885 21 VKFAPNSNQFLLASSW-DC--NVSLYDITNNNLRLKYA-HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV-IG 94 (327)
Q Consensus 21 i~fs~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~ 94 (327)
.+|+|++ ++|+.++. ++ .|.+||+.+++...... +...+...+|+ ++..++.++.++.|++||+.++.... ..
T Consensus 41 ~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 41 KCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CCBCTTS-CEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred ccCCCCC-CEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence 7899965 66776665 66 48888999988665544 44444467885 78899999989999999999887643 33
Q ss_pred cCCccEEEEE--EeCCCCEEEEE----------------------ECCCeEEEEeCCCCceeeeeeCCC--cEEEEec-C
Q psy11885 95 THDQPIRAVE--YSDEVNCILTG----------------------SWDTSVKMWDPRSSRCVGNYTQPD--KVFTMSL-C 147 (327)
Q Consensus 95 ~h~~~V~~l~--~~~~~~~l~sg----------------------s~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~-~ 147 (327)
.+...+.... +++++..++.. ..+..|.+||+.+++......... ....+++ +
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~d 199 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYD 199 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTE
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCC
Confidence 4444444333 48899888743 245789999999887654444333 2356777 7
Q ss_pred CCeEEEEeCC------CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec-Ce--EEEEEccCCcccccc
Q psy11885 148 GEKFVVGTAG------RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE-GR--AAVEYLDTGPEMQKM 218 (327)
Q Consensus 148 ~~~~~~~~~d------~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~~~~~~~~~~~~ 218 (327)
+..++....+ ..|.++|+.+.+.. ...............++|+++.++..+.. +. ..++.++........
T Consensus 200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (388)
T 3pe7_A 200 DSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ 278 (388)
T ss_dssp EEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE
T ss_pred CCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE
Confidence 8888776653 36888887654321 11111111123445688888777554442 32 236666654322111
Q ss_pred eeeeeeeeeccCCeeeE-EEeeEEEEecCCCeEEEe---------cCCCeEEEEeCCCceeeeecCcCCc----------
Q psy11885 219 KYAFKCHRIKEDGIEKI-YPVNAISFHQEYNTFATG---------GSDGYVNIWDGFNKKRLCQFHRYDT---------- 278 (327)
Q Consensus 219 ~~~~~~h~~~~~~~~~~-~~v~~v~~spd~~~lasg---------s~dg~i~iWd~~~~~~~~~~~~~~~---------- 278 (327)
...+..+ .+. .....++|+|||+.|+.. ..+..|++||+.+++. ..+..+..
T Consensus 279 l~~~~~~-------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~ 350 (388)
T 3pe7_A 279 LTSMPAC-------SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQ 350 (388)
T ss_dssp EEEECCE-------EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSS
T ss_pred EEcCCCc-------eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccc
Confidence 1111110 111 112345799999988854 4567899999987654 34433433
Q ss_pred -ceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEccccc
Q psy11885 279 -GITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQE 323 (327)
Q Consensus 279 -~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (327)
.+.+++|||||+.|+.++... -..+||.+.+.++.
T Consensus 351 ~~~~~~~~spDg~~l~~~s~~~----------g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 351 VTHPHPSFTPDDKQILFTSDVH----------GKPALYLATLPESV 386 (388)
T ss_dssp TTCCCCEECTTSSEEEEEECTT----------SSCEEEEEECCGGG
T ss_pred cCCCCccCCCCCCEEEEEecCC----------CceeEEEEECChhc
Confidence 467889999999999887432 12368888776654
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=3.5e-16 Score=138.21 Aligned_cols=261 Identities=8% Similarity=-0.015 Sum_probs=160.9
Q ss_pred CCCCeeEEEEecCCCcEEEEEECC----CcEEEEECCC--CeEEEEe---cCCCceeeEEEeCCceEEEEe-cCCcEEEE
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWD----CNVSLYDITN--NNLRLKY---AHSDPVLDCCFQDAVHSFSGG-LDCTLKMF 83 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d----~~i~iwd~~~--~~~~~~~---~h~~~v~~~~~~~~~~~~sgs-~Dg~i~vw 83 (327)
+...+..++|+|+ +++|++++.+ +.|.+|++.. +++.... .+......+++ ++..+++++ .+++|.+|
T Consensus 48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEE
Confidence 4567788999996 5778888775 7999998865 5543222 24455666777 777777665 57899999
Q ss_pred EcCCCcee----eeec-----------CCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCce------e------ee-
Q psy11885 84 DFNTQTET----VIGT-----------HDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRC------V------GN- 134 (327)
Q Consensus 84 d~~~~~~~----~~~~-----------h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~------~------~~- 134 (327)
++...... .... +...+.+++|+|+|++++.+. .++.|++|++..... + ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99753211 1111 123458899999999776665 489999998865331 1 11
Q ss_pred -eeCCC--cEEEEecCCCeEEEEe-CCCeEEEEECCCCccceeeecccc---eeeeEEeEEeeCCCceEEEeec--CeEE
Q psy11885 135 -YTQPD--KVFTMSLCGEKFVVGT-AGRKVCIWDLRNMGYIMQRRESSL---KFQTRCIKCFPNKQGYVLSSIE--GRAA 205 (327)
Q Consensus 135 -~~~~~--~~~~~~~~~~~~~~~~-~d~~v~iwD~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~ 205 (327)
..... ..+.++++++.++++. .++.|.+||++++........... ......++++|+++.++++... +.+.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 11111 2456778888887776 689999999975432111111111 1123577888888876665544 5566
Q ss_pred EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEE--eCCCceeeeecCc-CCcceE
Q psy11885 206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIW--DGFNKKRLCQFHR-YDTGIT 281 (327)
Q Consensus 206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iW--d~~~~~~~~~~~~-~~~~v~ 281 (327)
++.++...........+.. + ..+..++|+|||++|++++ .++.|.+| |..+++....... +...+.
T Consensus 286 v~~~~~~~g~~~~~~~~~~------g----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~ 355 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT------G----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV 355 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC------S----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred EEEEcCCCCcEEEeeEecC------C----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence 6555422111111111110 0 1356899999999888877 57899996 5556665443322 233578
Q ss_pred EEEEC
Q psy11885 282 SLCFS 286 (327)
Q Consensus 282 ~l~fs 286 (327)
||+|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99986
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=3e-17 Score=158.20 Aligned_cols=263 Identities=10% Similarity=0.037 Sum_probs=171.5
Q ss_pred eEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC----ceeeEEEe-CCceEEEEec---------CCcEEEEE
Q psy11885 19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD----PVLDCCFQ-DAVHSFSGGL---------DCTLKMFD 84 (327)
Q Consensus 19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~----~v~~~~~~-~~~~~~sgs~---------Dg~i~vwd 84 (327)
..++|+|++ +++++ +.|++|++||+.+++......+.. .+.+++|+ ++.++++++. |+.|++||
T Consensus 19 ~~~~~s~dg-~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 19 FFPNWISGQ-EYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCCEESSSS-EEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CccEECCCC-eEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 378999965 65554 469999999999998766554332 38889995 7888887776 78999999
Q ss_pred cCCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC--C-------------------c
Q psy11885 85 FNTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP--D-------------------K 140 (327)
Q Consensus 85 ~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~--~-------------------~ 140 (327)
++++.. ..+ ...+..++|+|||+.|+.+. |+.|++||+.++++....... . .
T Consensus 97 ~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 97 LSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 988765 333 34688899999999999886 789999999888765432111 1 2
Q ss_pred EEEEecCCCeEEEEeCCC----------------------------------eEEEEECCCCccc--eeeec----ccce
Q psy11885 141 VFTMSLCGEKFVVGTAGR----------------------------------KVCIWDLRNMGYI--MQRRE----SSLK 180 (327)
Q Consensus 141 ~~~~~~~~~~~~~~~~d~----------------------------------~v~iwD~~~~~~~--~~~~~----~~~~ 180 (327)
...++++|+.|++++.|. .|++||+.+.+.. ..... ....
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 467889999999887552 7889999876531 01000 0112
Q ss_pred eeeEEeEEeeCCCceEEEee--cCeEEEEEcc----CCcccccceee--eeeeeeccCCeeeEEEee-----EEEEecCC
Q psy11885 181 FQTRCIKCFPNKQGYVLSSI--EGRAAVEYLD----TGPEMQKMKYA--FKCHRIKEDGIEKIYPVN-----AISFHQEY 247 (327)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~----~~~~~~~~~~~--~~~h~~~~~~~~~~~~v~-----~v~~spd~ 247 (327)
.....++++|++..++.... .+...++.++ ........... ...|. ..+. .++|+|||
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT---------GWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS---------SCSSSSSCCCCEECTTS
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC---------ceEccccCCccEECCCC
Confidence 23456778888543333222 2335566666 33221111110 01111 1233 68999999
Q ss_pred CeEEE--ecCCC--eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885 248 NTFAT--GGSDG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 248 ~~las--gs~dg--~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
+.|+. +..+| .|++||+.+++ ...+..+...+..+.++ ||+.|+..+..
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 96653 44555 57777876655 44555555567888888 88888877654
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.78 E-value=2.2e-16 Score=138.71 Aligned_cols=245 Identities=8% Similarity=0.040 Sum_probs=152.1
Q ss_pred CCCeeEEEEecCCCcEEEEEEC--CCcEEEEECCCCeEEEE---ecCCCceeeEEEe-CCceEEEEe-cCCcEEEEEcCC
Q psy11885 15 EDGITAVKFAPNSNQFLLASSW--DCNVSLYDITNNNLRLK---YAHSDPVLDCCFQ-DAVHSFSGG-LDCTLKMFDFNT 87 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~---~~h~~~v~~~~~~-~~~~~~sgs-~Dg~i~vwd~~~ 87 (327)
...+..++|+|++ ++++++.. ++.|++||+.+++.... ..+...+..++|+ ++..+++++ .+++|++|++..
T Consensus 39 ~~~p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTC-EEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCC-eEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence 3567789999965 54444332 68999999987764322 3466678889995 677788777 679999999963
Q ss_pred -Cceeeee--cC----------CccEEEEEEeCCCCEEEEEECCCeEEEEeCC-CCceee--eeeCC----CcEEEEecC
Q psy11885 88 -QTETVIG--TH----------DQPIRAVEYSDEVNCILTGSWDTSVKMWDPR-SSRCVG--NYTQP----DKVFTMSLC 147 (327)
Q Consensus 88 -~~~~~~~--~h----------~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~-~~~~~~--~~~~~----~~~~~~~~~ 147 (327)
+....+. .+ ...+.+++|+|+|+.+++...++.|++||+. +++... .+..+ ...+.++++
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd 197 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD 197 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC
Confidence 2222211 11 2248889999999966666678999999998 454322 12221 123577888
Q ss_pred CCeEEE-EeCCCeEEEEECCC--Cccceeeecccce------eeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCccccc
Q psy11885 148 GEKFVV-GTAGRKVCIWDLRN--MGYIMQRRESSLK------FQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQK 217 (327)
Q Consensus 148 ~~~~~~-~~~d~~v~iwD~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 217 (327)
|+.+++ ...++.|++||+.. ++..........+ .....+++.|+++.++++. .++.+.++.++..... .
T Consensus 198 g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~-~ 276 (347)
T 3hfq_A 198 GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL-T 276 (347)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE-E
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE-E
Confidence 886665 45678999999874 2211111111111 2346678888887664444 4566666554421111 1
Q ss_pred ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC-CCeEEEE--eCCCceee
Q psy11885 218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVNIW--DGFNKKRL 270 (327)
Q Consensus 218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~-dg~i~iW--d~~~~~~~ 270 (327)
....+..+. ..+..++|+||+++|++++. ++.|.+| |..+++..
T Consensus 277 ~~~~~~~~~---------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 277 LIQQISTEG---------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECSS---------SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EeEEEecCC---------CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 111111110 12568999999998887765 4899999 55556543
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=9.5e-16 Score=135.41 Aligned_cols=260 Identities=10% Similarity=0.032 Sum_probs=160.6
Q ss_pred CcEEEEEEC----CCcEEEEEC--CCCeEEEEe-cCCCceeeEEEe-CCceEEEEecC----CcEEEEEcCCC--ceeee
Q psy11885 28 NQFLLASSW----DCNVSLYDI--TNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLD----CTLKMFDFNTQ--TETVI 93 (327)
Q Consensus 28 ~~~l~s~~~----d~~i~iwd~--~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~D----g~i~vwd~~~~--~~~~~ 93 (327)
..++++|++ ++.|.+|++ .++++.... .+...+..++|+ ++..+++++.+ +.|.+|+++.. ....+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 356667754 568999976 456543221 156677788995 67788888876 79999998763 33222
Q ss_pred ---ecCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCceeeee----e--CC-----------CcEEEEecCCCeEE
Q psy11885 94 ---GTHDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRCVGNY----T--QP-----------DKVFTMSLCGEKFV 152 (327)
Q Consensus 94 ---~~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~~~~~----~--~~-----------~~~~~~~~~~~~~~ 152 (327)
..+......+++ +++.+++++ .+++|.+|++.....+... . .. .....++++++.++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 234455677777 778777776 5889999999754332211 1 10 12367788888766
Q ss_pred EEe-CCCeEEEEECCCCcc------cee-----eecccceeeeEEeEEeeCCCceEEEe-ecCeEEEEEccCCcccccce
Q psy11885 153 VGT-AGRKVCIWDLRNMGY------IMQ-----RRESSLKFQTRCIKCFPNKQGYVLSS-IEGRAAVEYLDTGPEMQKMK 219 (327)
Q Consensus 153 ~~~-~d~~v~iwD~~~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 219 (327)
++. .++.|++|++..... +.. .........++.++++|+++.++++. .++.+.++.++.+... ..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~--~~ 248 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD--EI 248 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE--EE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE--Ee
Confidence 654 578999999875431 100 11111122346788888887665555 4566666555432210 01
Q ss_pred eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC--CCeEEEEeCC--Cce--eeeecCcCCcceEEEEECCCCCEEE
Q psy11885 220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS--DGYVNIWDGF--NKK--RLCQFHRYDTGITSLCFSYDGNVLA 293 (327)
Q Consensus 220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~--dg~i~iWd~~--~~~--~~~~~~~~~~~v~~l~fspdg~~la 293 (327)
..+.. .. .+......++|+|||++|+++.. ++.|.+|++. +++ .+..+.. ...+.+++|||||++|+
T Consensus 249 ~~~~~--~~----~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 249 QTVAA--DT----VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLL 321 (361)
T ss_dssp EEEES--CS----SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEE
T ss_pred EEEec--CC----CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEE
Confidence 11110 00 00112468999999998866555 4899999985 343 3334433 34578999999999999
Q ss_pred EEEcc
Q psy11885 294 IACSY 298 (327)
Q Consensus 294 ~~~~~ 298 (327)
+++..
T Consensus 322 ~~~~~ 326 (361)
T 3scy_A 322 VACRD 326 (361)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99754
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=5.8e-18 Score=153.66 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=114.4
Q ss_pred CCCCeeEEEEecCCCcEEE----EEECCCcEEEEECCCC--------e----EEEEecCCCceeeEEEe-C-CceEEEEe
Q psy11885 14 PEDGITAVKFAPNSNQFLL----ASSWDCNVSLYDITNN--------N----LRLKYAHSDPVLDCCFQ-D-AVHSFSGG 75 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~----s~~~d~~i~iwd~~~~--------~----~~~~~~h~~~v~~~~~~-~-~~~~~sgs 75 (327)
+.+.|++++|+|+ +++|+ +++.|++|+|||+.++ + .....+|...|.+++|+ + +..+++++
T Consensus 91 ~~~~v~~l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 91 MKFPIHHLALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CSSCEEEEEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred CCCcccEEEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3467999999996 46777 7888999999998654 1 22233588999999996 3 67899999
Q ss_pred cCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC--------CcEEEEec
Q psy11885 76 LDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP--------DKVFTMSL 146 (327)
Q Consensus 76 ~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~--------~~~~~~~~ 146 (327)
.||+|++||++++... ....|...|.+++|+|+|++|++|+.|++|++||++ ++....+..+ ..+.++.+
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence 9999999999887543 345688899999999999999999999999999998 4444433221 14555655
Q ss_pred CCC--eEEE-EeCCC------eEEEEECCCC
Q psy11885 147 CGE--KFVV-GTAGR------KVCIWDLRNM 168 (327)
Q Consensus 147 ~~~--~~~~-~~~d~------~v~iwD~~~~ 168 (327)
.++ .+++ ...+| .+++||+++.
T Consensus 249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 249 IGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 543 3322 33332 4999999864
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.75 E-value=7.5e-16 Score=135.07 Aligned_cols=229 Identities=10% Similarity=0.025 Sum_probs=153.3
Q ss_pred CCCceeeEEEe-CCceEEEEec-------CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeC
Q psy11885 56 HSDPVLDCCFQ-DAVHSFSGGL-------DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDP 126 (327)
Q Consensus 56 h~~~v~~~~~~-~~~~~~sgs~-------Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl 126 (327)
....+..++|+ ++..++.++. ++.|.+||..+++..........+..++++++++.++.+ ..++.|.+||+
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 34567788885 6677877664 568999999887654322233456789999999966554 55799999999
Q ss_pred CCCceeeeeeCCC------------cEEEEecCCCeEEEEe--CCCeEEEEECCCCccceeeecccceeeeEEeEEeeCC
Q psy11885 127 RSSRCVGNYTQPD------------KVFTMSLCGEKFVVGT--AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK 192 (327)
Q Consensus 127 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (327)
++++.+..+..+. ..+.++++++.++++. .++.|.+||+++.+....... .......+.+.+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN--TGKMSTGLALDSEG 196 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC--CCTTCCCCEEETTT
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC--CCCccceEEECCCC
Confidence 9998877765432 2356777888877765 478999999987764322210 11123567788888
Q ss_pred CceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC-CCeEEEEeCCCceeee
Q psy11885 193 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVNIWDGFNKKRLC 271 (327)
Q Consensus 193 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~-dg~i~iWd~~~~~~~~ 271 (327)
+.++++..++.+.++....+... ..+... .. .+...+..++|+|++++|++++. ++.|.+||..+++.+.
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~---~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKIL----SRKKLL---DD--GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEE----EEEECC---CS--SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCeEEEEECCCCeEE----EEEEcC---CC--CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 87777777666655433332211 111110 00 01113567999999997766654 5999999999988777
Q ss_pred ecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 272 QFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 272 ~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
.+.... + ..++|+|||++|++++.
T Consensus 268 ~~~~~~-~-~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 268 KVAAPE-S-LAVLFNPARNEAYVTHR 291 (353)
T ss_dssp EEECSS-C-CCEEEETTTTEEEEEET
T ss_pred EEEcCC-C-ceEEECCCCCEEEEEEC
Confidence 665433 2 57999999998877765
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=1.9e-16 Score=149.05 Aligned_cols=222 Identities=10% Similarity=0.054 Sum_probs=148.9
Q ss_pred CCceeeEEEe-CCceEEEEec-CCcEEEEEcCCCceeeeecCC-ccEEEEEEeCCCCEEEEEEC---CCeEEEEeCCC--
Q psy11885 57 SDPVLDCCFQ-DAVHSFSGGL-DCTLKMFDFNTQTETVIGTHD-QPIRAVEYSDEVNCILTGSW---DTSVKMWDPRS-- 128 (327)
Q Consensus 57 ~~~v~~~~~~-~~~~~~sgs~-Dg~i~vwd~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~sgs~---d~~i~lwdl~~-- 128 (327)
..+|.+++|+ ++.++++++. ||++++|+++++....+..|. ..+..++|+|| +.+++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 4578999984 8899998877 999999999877666665555 68999999999 77777775 45556654432
Q ss_pred -CceeeeeeC--CCcEEEEecCCCe-EEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec--C
Q psy11885 129 -SRCVGNYTQ--PDKVFTMSLCGEK-FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE--G 202 (327)
Q Consensus 129 -~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 202 (327)
+... .+.. .....+++++|+. +++...++.+.+||+.+++....... .....+++|+++.++.++.+ +
T Consensus 100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-----~~~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-----PGFGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-----SSCEEEEEEETTEEEEEEEEETT
T ss_pred CCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-----CCceEEECCCCCEEEEEEEcCCC
Confidence 2222 2221 2335678888865 33344445555999987643211111 11466788999888866654 3
Q ss_pred eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCC--eEEEEeCCCceeeeecCcCCcce
Q psy11885 203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG--YVNIWDGFNKKRLCQFHRYDTGI 280 (327)
Q Consensus 203 ~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg--~i~iWd~~~~~~~~~~~~~~~~v 280 (327)
...++.++....... .+..|. ..+..++|||||+.|++++.++ .|++||+.+++.. .+..+...+
T Consensus 174 ~~~i~~~d~~~g~~~---~l~~~~---------~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~ 240 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR---VFDSGE---------GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDF 240 (582)
T ss_dssp EEEEEEEETTTCCCE---EECCSS---------CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHH
T ss_pred CeEEEEEcCCCCCce---EeecCC---------CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcCh
Confidence 345666664322111 111111 1467899999999999888888 8999999888776 666666666
Q ss_pred EEEE--------ECCCCCEEEEEEcc
Q psy11885 281 TSLC--------FSYDGNVLAIACSY 298 (327)
Q Consensus 281 ~~l~--------fspdg~~la~~~~~ 298 (327)
..++ |||||+++++++.+
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~ 266 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARRE 266 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcC
Confidence 6677 99999877777654
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=9.9e-16 Score=135.77 Aligned_cols=266 Identities=9% Similarity=0.037 Sum_probs=158.7
Q ss_pred EEEEEECC--CcEEEEEC--CCCeEEEEe----cCCCceeeEEEe-CCceEEEEecCCcEEEEEcC-CCceeeeecCC--
Q psy11885 30 FLLASSWD--CNVSLYDI--TNNNLRLKY----AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN-TQTETVIGTHD-- 97 (327)
Q Consensus 30 ~l~s~~~d--~~i~iwd~--~~~~~~~~~----~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~-~~~~~~~~~h~-- 97 (327)
.|++|+.. +.|.+|++ .++++.... .....+..++|+ ++.++++++.+ .|.+|+++ ++....+..+.
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 46667664 46887765 566653321 133467788885 77788888888 99999997 55443222211
Q ss_pred ccEEEEEEeCCCCE--EEEEE-------------CCCeEEEEeCC-CCceeeeee-----CC--CcEEEEecCCCeEEEE
Q psy11885 98 QPIRAVEYSDEVNC--ILTGS-------------WDTSVKMWDPR-SSRCVGNYT-----QP--DKVFTMSLCGEKFVVG 154 (327)
Q Consensus 98 ~~V~~l~~~~~~~~--l~sgs-------------~d~~i~lwdl~-~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~ 154 (327)
+.+..++|+|+|+. ++++. .++++++|++. .++....+. .. .....++++|+.++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23456889999984 44553 68999999997 455443322 11 2245677888888776
Q ss_pred eC-CCeEEEEECC-CCccceeeecc--cceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccc-eeeeeeeeec
Q psy11885 155 TA-GRKVCIWDLR-NMGYIMQRRES--SLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKM-KYAFKCHRIK 228 (327)
Q Consensus 155 ~~-d~~v~iwD~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~h~~~ 228 (327)
.. ++.|++||+. +++........ .....++.++++|+++.++++.. ++.+.++.++........ ...+. ...
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~--~~~ 240 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP--LIP 240 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE--SSC
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE--cCC
Confidence 54 6799999997 55432111110 00123567888888877666553 556666655532111000 00000 000
Q ss_pred cCCeeeEE------EeeEEE-EecCCCeEEEecCC-C-----eEEEEeCC-Cceeee---ecCcCCcceEEEEECC---C
Q psy11885 229 EDGIEKIY------PVNAIS-FHQEYNTFATGGSD-G-----YVNIWDGF-NKKRLC---QFHRYDTGITSLCFSY---D 288 (327)
Q Consensus 229 ~~~~~~~~------~v~~v~-~spd~~~lasgs~d-g-----~i~iWd~~-~~~~~~---~~~~~~~~v~~l~fsp---d 288 (327)
....++.. .+..++ |+|||++|+++..+ . +|.+|++. +++... ....+......++||| |
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 00000000 366899 99999998876543 2 89999986 555332 1222333457899999 8
Q ss_pred CCEEEEEEcc
Q psy11885 289 GNVLAIACSY 298 (327)
Q Consensus 289 g~~la~~~~~ 298 (327)
|++|++++.+
T Consensus 321 g~~l~v~~~~ 330 (365)
T 1jof_A 321 DEWMAITDDQ 330 (365)
T ss_dssp TTEEEEECSS
T ss_pred CCEEEEEEcC
Confidence 9999998754
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=2.6e-15 Score=131.30 Aligned_cols=228 Identities=10% Similarity=0.056 Sum_probs=142.5
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec--C-----CCceeeEEEe-CCceEEEEecC-----------
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA--H-----SDPVLDCCFQ-DAVHSFSGGLD----------- 77 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--h-----~~~v~~~~~~-~~~~~~sgs~D----------- 77 (327)
.+..++|+|++..++++...++.|.+||+.+++...... + ...+..++|+ ++.++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 578999999754455566678999999999988654433 2 1236778885 77888888765
Q ss_pred -CcEEEEEcCCCce---eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC--------------
Q psy11885 78 -CTLKMFDFNTQTE---TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-------------- 139 (327)
Q Consensus 78 -g~i~vwd~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-------------- 139 (327)
+.|.+||+.+++. .....+...+.+++|+|+++ ++.++. .|.+||+++++.+..+....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceee
Confidence 8999999987432 12223344688899999999 666544 49999999988776654321
Q ss_pred -----------cEEEEecC--C---------C--eEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEee-CCCc
Q psy11885 140 -----------KVFTMSLC--G---------E--KFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFP-NKQG 194 (327)
Q Consensus 140 -----------~~~~~~~~--~---------~--~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 194 (327)
....+... + . .+.....++.+++|++.. .......+.++| +++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~sp~dg~~ 269 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-----------LTELYFTGLRSPKDPNQ 269 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-----------CSSCEEEEEECSSCTTE
T ss_pred ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc-----------CCCcceeeEecCCCCCE
Confidence 00111111 0 0 011222334455554421 111234566778 7766
Q ss_pred eEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC
Q psy11885 195 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 274 (327)
Q Consensus 195 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~ 274 (327)
++++ ++.+.++....... ...+... ..+.+++|+|++++|++++.++.|++||..+++.+..+.
T Consensus 270 l~~~--~~~v~~~d~~~~~~----~~~~~~~----------~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 270 IYGV--LNRLAKYDLKQRKL----IKAANLD----------HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEEE--ESEEEEEETTTTEE----EEEEECS----------SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEE--cCeEEEEECccCeE----EEEEcCC----------CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 6655 55555543332221 1111100 125689999999999988889999999999988777664
No 162
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=2.6e-14 Score=124.85 Aligned_cols=226 Identities=10% Similarity=0.055 Sum_probs=151.5
Q ss_pred CCCCeeEEEEecCCCcEEEEEECC------------------------CcEEEEECCCCeEEEEec--CCCceeeEEEe-
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWD------------------------CNVSLYDITNNNLRLKYA--HSDPVLDCCFQ- 66 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~--h~~~v~~~~~~- 66 (327)
.-+.+.+|+|+|+ ++++++...+ ++|.+||..++++..... +-..+..+++.
T Consensus 22 ~l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 22 LPGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CCSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred ecCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 4478999999996 5677777666 479999999888665544 23467788885
Q ss_pred CCceEEEEecCCcEEEEEcCCCc--eeee---------ecCCccEEEEEEeC-CCCEEEEEE-CCCeEEEEeCCCCceee
Q psy11885 67 DAVHSFSGGLDCTLKMFDFNTQT--ETVI---------GTHDQPIRAVEYSD-EVNCILTGS-WDTSVKMWDPRSSRCVG 133 (327)
Q Consensus 67 ~~~~~~sgs~Dg~i~vwd~~~~~--~~~~---------~~h~~~V~~l~~~~-~~~~l~sgs-~d~~i~lwdl~~~~~~~ 133 (327)
++...++...++.|++||.+... ...+ ..+-.....|+++| +++.+++.+ .+++|++|| .+++.+.
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 66766777778999999987652 2223 12334678999999 788777776 689999999 4566655
Q ss_pred eeeCC-------------CcEEEEecC-CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe
Q psy11885 134 NYTQP-------------DKVFTMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS 199 (327)
Q Consensus 134 ~~~~~-------------~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (327)
.+... ...+++++. +..+++...++.|++||..+++.+......
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~---------------------- 237 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA---------------------- 237 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT----------------------
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc----------------------
Confidence 54311 123556666 455566667889999998744321100000
Q ss_pred ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec------CCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885 200 IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ------EYNTFATGGSDGYVNIWDGFNKKRLCQF 273 (327)
Q Consensus 200 ~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp------d~~~lasgs~dg~i~iWd~~~~~~~~~~ 273 (327)
..+. .+.+++|+| +++.+++.+.+..|++||..+++.+..+
T Consensus 238 ----------~~~~-----------------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 238 ----------SFGR-----------------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp ----------TTTT-----------------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred ----------ccCC-----------------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 0000 122344455 5665666666779999999999888776
Q ss_pred C---cCCcceEEEEECCCCCEEEEEE
Q psy11885 274 H---RYDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 274 ~---~~~~~v~~l~fspdg~~la~~~ 296 (327)
. .+......|+|+|||+++++..
T Consensus 285 ~~~~~~~~~p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 285 KPVRKHFDMPHDIVASEDGTVYIGDA 310 (329)
T ss_dssp CCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred cCCCCccCCeeEEEECCCCCEEEEEC
Confidence 3 4445679999999997666554
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=7.1e-15 Score=142.20 Aligned_cols=272 Identities=8% Similarity=-0.005 Sum_probs=166.2
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCce-----eeEEEe-CCceEEEEecC---------Cc
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPV-----LDCCFQ-DAVHSFSGGLD---------CT 79 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v-----~~~~~~-~~~~~~sgs~D---------g~ 79 (327)
.....++|+|+ +++++++ |++|++||+.+++..... .|.... ....|+ ++.++++++.+ +.
T Consensus 17 ~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCC-CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 35678999996 4788775 999999999998865444 344322 235675 78888888766 55
Q ss_pred EEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee-C-CC------------------
Q psy11885 80 LKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-Q-PD------------------ 139 (327)
Q Consensus 80 i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~-~-~~------------------ 139 (327)
+.+||+.++....+..|...+...+|||||+.|+.++ |+.|.+||+.+++..+... . ..
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 6799999987766777778899999999999998885 6899999998876543211 1 11
Q ss_pred -cEEEEecCCCeEEEEeCCC------------------------------------eEEEEECCC---Ccc--ceeeecc
Q psy11885 140 -KVFTMSLCGEKFVVGTAGR------------------------------------KVCIWDLRN---MGY--IMQRRES 177 (327)
Q Consensus 140 -~~~~~~~~~~~~~~~~~d~------------------------------------~v~iwD~~~---~~~--~~~~~~~ 177 (327)
....++++|+.|+..+.|. +|++||+.+ .+. .......
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 1256889999888765321 578888887 521 1111110
Q ss_pred ----cceeeeEEeEEeeCCCceEEEee--cCeEEEEEccCCccc----ccceeee--eeeeeccCCeeeEEEeeEEEEec
Q psy11885 178 ----SLKFQTRCIKCFPNKQGYVLSSI--EGRAAVEYLDTGPEM----QKMKYAF--KCHRIKEDGIEKIYPVNAISFHQ 245 (327)
Q Consensus 178 ----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~----~~~~~~~--~~h~~~~~~~~~~~~v~~v~~sp 245 (327)
........++++|+++.++.... .+...|+.++..... ......+ ..|.. ... ......++|+|
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~---~v~-~~~~~~p~fsp 328 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG---WVG-RFRPSEPHFTL 328 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSS---CSS-SSSCCCCEECT
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCc---eEc-cCcCCCceEcC
Confidence 01223456778888764444333 233445555532211 0000000 11110 000 00022678999
Q ss_pred CCCeEE-EecC-CC--eEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 246 EYNTFA-TGGS-DG--YVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 246 d~~~la-sgs~-dg--~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
||+.|+ ..++ +| .|++||...++ ..++......|..+. ++|++.|+..+.
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~-~~~lT~g~~~v~~~~-~~d~~~i~f~~~ 382 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGIE-ALTSDYLYYISN 382 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSS-CEESCCSSSCEEEEE-EECSSEEEEEES
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCc-eEecccCCEEEEEEE-EEeCCEEEEEEe
Confidence 999877 6654 44 68888987654 334444444555543 245776666554
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.70 E-value=5.3e-16 Score=149.48 Aligned_cols=229 Identities=10% Similarity=0.001 Sum_probs=146.1
Q ss_pred eEEEeCCceEEEEecCCcEEEEEcCCCceeeeec-CCc---cEEEEEEeCCCCEEEEEEC---------CCeEEEEeCCC
Q psy11885 62 DCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGT-HDQ---PIRAVEYSDEVNCILTGSW---------DTSVKMWDPRS 128 (327)
Q Consensus 62 ~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~-h~~---~V~~l~~~~~~~~l~sgs~---------d~~i~lwdl~~ 128 (327)
+++|++...++..+.|++|++||+.++....+.. |.. .+.+++|||||++|++++. |++|++||+.+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 5678533355655679999999999887655443 332 3899999999999998876 78999999999
Q ss_pred Ccee--eeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccce----------------eeeEEeEEee
Q psy11885 129 SRCV--GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK----------------FQTRCIKCFP 190 (327)
Q Consensus 129 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 190 (327)
++.+ ..+........++++|+.++.+. ++.|++||+.+++........... .....+.++|
T Consensus 100 g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 100 GEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp TEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred CccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence 8773 23333344578899999998875 789999999876532111011000 0013678899
Q ss_pred CCCceEEEeecC--------------------------------eEEEEEccCCcccccceeeeee-eeeccCCeeeEEE
Q psy11885 191 NKQGYVLSSIEG--------------------------------RAAVEYLDTGPEMQKMKYAFKC-HRIKEDGIEKIYP 237 (327)
Q Consensus 191 ~~~~~~~~~~~~--------------------------------~~~i~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~ 237 (327)
+++.++.++.+. ...++.|+...........+.. .... .+...
T Consensus 179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~----~~~~~ 254 (719)
T 1z68_A 179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA----SSDYY 254 (719)
T ss_dssp TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH----TSCEE
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC----CCcce
Confidence 998888776542 1234444433221100000000 0000 12235
Q ss_pred eeEEEEecCCCeEEEecC--C--CeEEEEe----CCCceeeeec----CcCCcceE-----EEEECCCCCEEEEE
Q psy11885 238 VNAISFHQEYNTFATGGS--D--GYVNIWD----GFNKKRLCQF----HRYDTGIT-----SLCFSYDGNVLAIA 295 (327)
Q Consensus 238 v~~v~~spd~~~lasgs~--d--g~i~iWd----~~~~~~~~~~----~~~~~~v~-----~l~fspdg~~la~~ 295 (327)
+.+++||||++++++... + ..|++|| ..+++....+ ..+...+. .++|||||+.|+..
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 788999999887777432 2 3588899 7777665544 34555565 78999999977663
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.70 E-value=7.1e-15 Score=130.23 Aligned_cols=241 Identities=9% Similarity=0.057 Sum_probs=151.7
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECC-CCeEEEEecCC--CceeeEEEe-CCce--EEEEe-------------c
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDIT-NNNLRLKYAHS--DPVLDCCFQ-DAVH--SFSGG-------------L 76 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~--~~v~~~~~~-~~~~--~~sgs-------------~ 76 (327)
..+..++|+|+ +++|++++.+ .|.+|++. ++++.....+. +.+..++|+ ++.+ +++++ .
T Consensus 40 ~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 46889999996 5788888887 99999997 77754333221 335557775 5663 44553 6
Q ss_pred CCcEEEEEcCC-Ccee-eee----cCCccEEEEEEeCCCCEEEEEEC-CCeEEEEeCC-CCcee--eeeeC---CC--cE
Q psy11885 77 DCTLKMFDFNT-QTET-VIG----THDQPIRAVEYSDEVNCILTGSW-DTSVKMWDPR-SSRCV--GNYTQ---PD--KV 141 (327)
Q Consensus 77 Dg~i~vwd~~~-~~~~-~~~----~h~~~V~~l~~~~~~~~l~sgs~-d~~i~lwdl~-~~~~~--~~~~~---~~--~~ 141 (327)
++++++|+++. +... .+. .+...+..++|+|+|++++++.. ++.|++||+. +++.. ..+.. .. ..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 89999999974 3322 222 24567899999999998887764 6899999998 67643 33331 12 23
Q ss_pred EEEecCCCeEEEEeC-CCeEEEEECC--CCccce--e-eec--ccce--e-------eeEEeE-EeeCCCceEEEeecC-
Q psy11885 142 FTMSLCGEKFVVGTA-GRKVCIWDLR--NMGYIM--Q-RRE--SSLK--F-------QTRCIK-CFPNKQGYVLSSIEG- 202 (327)
Q Consensus 142 ~~~~~~~~~~~~~~~-d~~v~iwD~~--~~~~~~--~-~~~--~~~~--~-------~~~~~~-~~~~~~~~~~~~~~~- 202 (327)
+.++++|+.++++.. ++.|.+|++. +++... . ... .... . ....++ ++|+++.++++..+.
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 567788888887764 6899999865 333211 0 100 0000 1 245677 888887766655433
Q ss_pred -----eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec---CCCeEEEecCC-CeEEEEeCCCc
Q psy11885 203 -----RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ---EYNTFATGGSD-GYVNIWDGFNK 267 (327)
Q Consensus 203 -----~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp---d~~~lasgs~d-g~i~iWd~~~~ 267 (327)
.+.++..+..............+. ..+..++|+| ||++|++++.+ ++|++|++...
T Consensus 278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~---------~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 278 FELQGYIAGFKLRDCGSIEKQLFLSPTPT---------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECSS---------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCeEEEEEECCCCCEEEeeeeeecCC---------CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 455554432111110000011010 0245789999 89999998875 89999987654
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=2e-15 Score=134.42 Aligned_cols=264 Identities=10% Similarity=0.025 Sum_probs=161.2
Q ss_pred eeEEEEecCCCcEEEEEE-CC--CcEEEEECCCCeEEEEecCCCcee-eEEEe-CCceEEEEecCCcEEEEEcCCCceee
Q psy11885 18 ITAVKFAPNSNQFLLASS-WD--CNVSLYDITNNNLRLKYAHSDPVL-DCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV 92 (327)
Q Consensus 18 I~~i~fs~~~~~~l~s~~-~d--~~i~iwd~~~~~~~~~~~h~~~v~-~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~ 92 (327)
+..++|+|++ ++|+... .+ ..|.+||+.+++......+...+. .+.|+ ++..++.++.++.|.+||+.++....
T Consensus 38 ~~~~~~SpdG-~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDG-KKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp TTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eecCcCCCCC-CEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 6788999975 5555543 33 368889999988655544444433 36775 78889898889999999998876543
Q ss_pred ee-cCCccEEE-------------------EEEeCCCCEEEEE-----ECCCeEEEEeCCCCceeeeeeCCCc--EEEEe
Q psy11885 93 IG-THDQPIRA-------------------VEYSDEVNCILTG-----SWDTSVKMWDPRSSRCVGNYTQPDK--VFTMS 145 (327)
Q Consensus 93 ~~-~h~~~V~~-------------------l~~~~~~~~l~sg-----s~d~~i~lwdl~~~~~~~~~~~~~~--~~~~~ 145 (327)
+. .+...... +.++|+++.++.+ ..+..|.+||+.+++.......... ...++
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 32 23332222 2456777665543 4567899999998876544433333 34566
Q ss_pred c-CCCeEEEEeCC------CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeec-Ce--EEEEEccCCccc
Q psy11885 146 L-CGEKFVVGTAG------RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIE-GR--AAVEYLDTGPEM 215 (327)
Q Consensus 146 ~-~~~~~~~~~~d------~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~~~~~~~~~ 215 (327)
+ ++..++..+.+ ..|.+||+.+.+.. .............+.++|+++.++..+.. +. ..++.++.....
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 6 56667666543 36888898654321 11111111224556788888776665443 22 336666643321
Q ss_pred ccceeeeeeeeeccCCeeeEEEeeEEEEec-CCCeEEEec----------------CCCeEEEEeCCCceeeeecCcCCc
Q psy11885 216 QKMKYAFKCHRIKEDGIEKIYPVNAISFHQ-EYNTFATGG----------------SDGYVNIWDGFNKKRLCQFHRYDT 278 (327)
Q Consensus 216 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-d~~~lasgs----------------~dg~i~iWd~~~~~~~~~~~~~~~ 278 (327)
......+. ... ++|+| |++.+++++ .+..|++||..+++. ..+..+..
T Consensus 276 ~~~l~~~~-------------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~ 340 (396)
T 3c5m_A 276 NEEVMVMP-------------PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHST 340 (396)
T ss_dssp EEEEEECC-------------SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCC
T ss_pred eEEeeeCC-------------CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCC
Confidence 11100000 012 78999 999888754 347899999887653 33333332
Q ss_pred -----------ceEEEEECCCCCEEEEEEcc
Q psy11885 279 -----------GITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 279 -----------~v~~l~fspdg~~la~~~~~ 298 (327)
.+..++|||||+.|+.++..
T Consensus 341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~ 371 (396)
T 3c5m_A 341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDF 371 (396)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred ccccccccccCCCCCceEccCCCeEEEEecC
Confidence 25668999999999988753
No 167
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=9e-14 Score=121.21 Aligned_cols=289 Identities=8% Similarity=-0.038 Sum_probs=175.0
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee-
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI- 93 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~- 93 (327)
..|.+++|++++ ..++..+.++.++.| ..........+...+.+++|. ++..++++..++.|.+||.+++....+
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKS-NSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGG-GCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCc-cceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 468889999954 556666778999999 233333444555567788885 555555778889999999987765433
Q ss_pred ecCCccEEEEEEeCCCCEEEEEECC----CeEEEEeCCCCceeeeee---CCCcE--EEEecCCCeEEEEeC------CC
Q psy11885 94 GTHDQPIRAVEYSDEVNCILTGSWD----TSVKMWDPRSSRCVGNYT---QPDKV--FTMSLCGEKFVVGTA------GR 158 (327)
Q Consensus 94 ~~h~~~V~~l~~~~~~~~l~sgs~d----~~i~lwdl~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~------d~ 158 (327)
..+...+.+++++++++++++...+ +.|.+||.++++....+. ....+ +.+++.+..+++... .+
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 3566789999999999887777666 689999998776542222 11223 345566655554432 24
Q ss_pred eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEE-eecCeEEEEEccCCc-ccccceeeeeeeeeccCCeeeEE
Q psy11885 159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGP-EMQKMKYAFKCHRIKEDGIEKIY 236 (327)
Q Consensus 159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~ 236 (327)
.|..+|..+.+.... .... .....+++.++++.++++ ..++.+.++..+... .......... .... + + .
T Consensus 163 ~l~~~~~~~~~~~~~--~~~~-~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~-~~~~--~--~-~ 233 (333)
T 2dg1_A 163 GVYYVSPDFRTVTPI--IQNI-SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP-YYFT--G--H-E 233 (333)
T ss_dssp EEEEECTTSCCEEEE--EEEE-SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE-EECC--S--S-S
T ss_pred eEEEEeCCCCEEEEe--ecCC-CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE-EecC--C--C-C
Confidence 566666654332111 0011 123556777776645444 334555444332111 1100000000 0000 0 0 1
Q ss_pred EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCc------ceEEEEECCCCCEEEEEEccccccCCCCCCCC
Q psy11885 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT------GITSLCFSYDGNVLAIACSYNYELETPPDPIP 310 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~------~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~ 310 (327)
.+..++++++|.++++...++.|.+||. +++.+..+..... .+.+++|+|||+.|.+++..+. . -.
T Consensus 234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~---~----~~ 305 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIE---M----GG 305 (333)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGG---G----TC
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccC---C----CC
Confidence 3567999999998888878899999997 4565555543322 5789999999988876665443 1 13
Q ss_pred CCcEEEEEcccccc
Q psy11885 311 PNNIFIRHVTDQET 324 (327)
Q Consensus 311 ~~~~~~~~~~~~~~ 324 (327)
...+|.+.+.-+|.
T Consensus 306 ~~~l~~~~~~~~g~ 319 (333)
T 2dg1_A 306 GSMLYTVNGFAKGH 319 (333)
T ss_dssp CEEEEEEECSSCBC
T ss_pred CceEEEEecccCce
Confidence 45677776654443
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=1.8e-13 Score=116.71 Aligned_cols=236 Identities=10% Similarity=0.094 Sum_probs=153.8
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec------CCCceeeEEE-eCCceEEEEe-c-CCcEEEEEcC
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA------HSDPVLDCCF-QDAVHSFSGG-L-DCTLKMFDFN 86 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------h~~~v~~~~~-~~~~~~~sgs-~-Dg~i~vwd~~ 86 (327)
..+.+++++++ +.++++...++.|++||........... +...+..+++ .....++.+. . ++.|++||.+
T Consensus 30 ~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~ 108 (286)
T 1q7f_A 30 TEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 108 (286)
T ss_dssp SCEEEEEECTT-CCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCCceEEECCC-CCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC
Confidence 57899999996 4677777788999999987443332211 2245778888 3444555444 3 8899999954
Q ss_pred CCceeeee-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC---CCc--EEEEecCCCeEEEEeCCCeE
Q psy11885 87 TQTETVIG-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ---PDK--VFTMSLCGEKFVVGTAGRKV 160 (327)
Q Consensus 87 ~~~~~~~~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~d~~v 160 (327)
......+. .+...+..++++++++.+++...++.|.+||.. ++.+..+.. ... .++++++++.+++...++.|
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i 187 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 187 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence 43333332 234568999999999988887788999999964 555555432 122 34455556656666678899
Q ss_pred EEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885 161 CIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 240 (327)
Q Consensus 161 ~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 240 (327)
++||.... .+ .. +..... . ..+..
T Consensus 188 ~~~~~~g~-~~------------~~-----------------------~~~~g~---~-----------------~~p~~ 211 (286)
T 1q7f_A 188 KVFNYEGQ-YL------------RQ-----------------------IGGEGI---T-----------------NYPIG 211 (286)
T ss_dssp EEEETTCC-EE------------EE-----------------------ESCTTT---S-----------------CSEEE
T ss_pred EEEcCCCC-EE------------EE-----------------------EccCCc---c-----------------CCCcE
Confidence 99986421 00 00 000000 0 02457
Q ss_pred EEEecCCCeEEEecCCC-eEEEEeCCCceeeeecCcCC--cceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEE
Q psy11885 241 ISFHQEYNTFATGGSDG-YVNIWDGFNKKRLCQFHRYD--TGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIR 317 (327)
Q Consensus 241 v~~spd~~~lasgs~dg-~i~iWd~~~~~~~~~~~~~~--~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 317 (327)
++++|+|+++++...++ .|++||. +++.+..+..+. ..+.+++|+|+|+++++ + .+++|+++
T Consensus 212 i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~-------------~~~~v~v~ 276 (286)
T 1q7f_A 212 VGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-S-------------KDYRLYIY 276 (286)
T ss_dssp EEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-E-------------TTTEEEEE
T ss_pred EEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-C-------------CCCeEEEE
Confidence 89999999999888886 9999995 456665554332 23689999999987776 4 23566666
Q ss_pred Ecccccc
Q psy11885 318 HVTDQET 324 (327)
Q Consensus 318 ~~~~~~~ 324 (327)
-+....+
T Consensus 277 ~~~~~~p 283 (286)
T 1q7f_A 277 RYVQLAP 283 (286)
T ss_dssp ECSCCCC
T ss_pred Ecccccc
Confidence 6655444
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.66 E-value=5.7e-14 Score=124.31 Aligned_cols=255 Identities=13% Similarity=0.046 Sum_probs=153.9
Q ss_pred CCCcEEEEECCCCeEEEEec-CCCceeeEEEe-CCceEEEEe----------cCCcEEEEEcCCCcee-eeec------C
Q psy11885 36 WDCNVSLYDITNNNLRLKYA-HSDPVLDCCFQ-DAVHSFSGG----------LDCTLKMFDFNTQTET-VIGT------H 96 (327)
Q Consensus 36 ~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~sgs----------~Dg~i~vwd~~~~~~~-~~~~------h 96 (327)
.|+.|.+||..++++..... +..+ .++|+ ++.++++++ .+++|.+||..+.+.. .+.. +
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 37899999999888654433 3333 78885 788888776 3678999999876542 2221 2
Q ss_pred CccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeee-eeCCCcE-EEEecCC-CeEEEEeCCCeEEEEECCCCccc
Q psy11885 97 DQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGN-YTQPDKV-FTMSLCG-EKFVVGTAGRKVCIWDLRNMGYI 171 (327)
Q Consensus 97 ~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~-~~~~~~~-~~~~~~~-~~~~~~~~d~~v~iwD~~~~~~~ 171 (327)
......++++|||++|+++.. +++|.+||+++++.+.. +..+... ..+.+.+ ..+++.+.|+.+.+|++.....+
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 234567899999999998864 68999999999988877 6554321 2234443 56788889999999988652222
Q ss_pred e-eeec-ccce--eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee--eccCCeeeEEEeeEEEEec
Q psy11885 172 M-QRRE-SSLK--FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR--IKEDGIEKIYPVNAISFHQ 245 (327)
Q Consensus 172 ~-~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~--~~~~~~~~~~~v~~v~~sp 245 (327)
. .... .... .....+...+++..++..+.++.+.+ ++...........+.... ....+.. -.....++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v--~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~g~~~~a~~~ 263 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYS--ADFSGDEVKVDGPWSLLNDEDKAKNWV-PGGYNLVGLHR 263 (361)
T ss_dssp EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEE--EECSSSSCEEEEEEESCCHHHHHTTCE-ECCSSCEEEET
T ss_pred eeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEE--EEecCCCceecccccccCccccccccc-cCCeeEEEEec
Confidence 1 0000 0000 00011122344444444555554444 333211101000000000 0000000 00112378999
Q ss_pred CCCeEEEecC-----------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 246 EYNTFATGGS-----------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 246 d~~~lasgs~-----------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
+++.+.++.. +++|.+||..+++.+..+..+. +++++|||||++|++++.
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC
Confidence 9888776532 3589999999999998887665 799999999999987763
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.65 E-value=1.5e-13 Score=121.68 Aligned_cols=255 Identities=11% Similarity=0.006 Sum_probs=158.9
Q ss_pred EEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEec-------CCCceeeEEEe-CCceEEEEec--CCc
Q psy11885 20 AVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYA-------HSDPVLDCCFQ-DAVHSFSGGL--DCT 79 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~-------h~~~v~~~~~~-~~~~~~sgs~--Dg~ 79 (327)
.++|+|+ +++|+++. .+++|.+||..+.+...... +......++++ ++.+++++.. +++
T Consensus 54 ~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence 8999996 46666665 36789999998877543322 12345677885 7888887764 689
Q ss_pred EEEEEcCCCceeee-ecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCC-Cceeee------eeCCC-c-EEEEecCC
Q psy11885 80 LKMFDFNTQTETVI-GTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRS-SRCVGN------YTQPD-K-VFTMSLCG 148 (327)
Q Consensus 80 i~vwd~~~~~~~~~-~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~-~~~~~~------~~~~~-~-~~~~~~~~ 148 (327)
|.+||+.+++.... -.+... ..+.+.|++ ..+++.+.||++..|++.. ++.... +.... . .....+.+
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 211 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK 211 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence 99999998754322 222222 224556765 6788889999999999865 554311 11111 1 11123446
Q ss_pred CeEEEEeCCCeEEEEECCCCccceeee-c--c----cc---eeeeEEeEEeeCCCceEEEee-c--------CeEEEEEc
Q psy11885 149 EKFVVGTAGRKVCIWDLRNMGYIMQRR-E--S----SL---KFQTRCIKCFPNKQGYVLSSI-E--------GRAAVEYL 209 (327)
Q Consensus 149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~-~--~----~~---~~~~~~~~~~~~~~~~~~~~~-~--------~~~~i~~~ 209 (327)
..++..+.++.|.++|+.......... . . .. +.....++++++++.+.++.. + ....++.+
T Consensus 212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi 291 (361)
T 2oiz_A 212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM 291 (361)
T ss_dssp SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence 677777888999999987543211000 0 0 00 011112567777665555432 1 12345555
Q ss_pred cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCc--eeeeecCcCCcceEEEEECC
Q psy11885 210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK--KRLCQFHRYDTGITSLCFSY 287 (327)
Q Consensus 210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~--~~~~~~~~~~~~v~~l~fsp 287 (327)
|.... +....+..+ . +.+++|+|||++|+++.. ++|.+||..++ +.+..+......-+.++|+|
T Consensus 292 D~~t~--~~v~~i~~~--------~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 292 DTKTK--QRVARIPGR--------D---ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp ETTTT--EEEEEEECT--------T---CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred ECCCC--cEEEEEecC--------C---eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence 54332 111111111 1 578999999999998887 99999999999 88888755555668899999
Q ss_pred CCC
Q psy11885 288 DGN 290 (327)
Q Consensus 288 dg~ 290 (327)
||+
T Consensus 358 ~G~ 360 (361)
T 2oiz_A 358 VGG 360 (361)
T ss_dssp CSC
T ss_pred CCC
Confidence 996
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.1e-13 Score=132.10 Aligned_cols=271 Identities=8% Similarity=-0.121 Sum_probs=165.7
Q ss_pred CCCCeeEEEEecCCCcEEEEE--ECCCcEEEEEC-CCCeEEEEecCCCcee---------eEEEe---CCce-EEEEec-
Q psy11885 14 PEDGITAVKFAPNSNQFLLAS--SWDCNVSLYDI-TNNNLRLKYAHSDPVL---------DCCFQ---DAVH-SFSGGL- 76 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~--~~d~~i~iwd~-~~~~~~~~~~h~~~v~---------~~~~~---~~~~-~~sgs~- 76 (327)
|...|..++|+++ ..+++.. +.++...||.. .+++......|...+. ...|+ ++.. ++.++.
T Consensus 22 ~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 22 RSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp TCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred cCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 4568999999984 4455555 45788999985 3455555555655555 45453 5777 665443
Q ss_pred CCcEEEEEcC--C-Cceeeeec-----CCccEEEEEEeCCCCEEEEEECC----------CeEEEEeCCC------Ccee
Q psy11885 77 DCTLKMFDFN--T-QTETVIGT-----HDQPIRAVEYSDEVNCILTGSWD----------TSVKMWDPRS------SRCV 132 (327)
Q Consensus 77 Dg~i~vwd~~--~-~~~~~~~~-----h~~~V~~l~~~~~~~~l~sgs~d----------~~i~lwdl~~------~~~~ 132 (327)
+..|.+|++. + +....+.. |...+..++|+|||+.|+.++.| ..|.+||+.+ ++..
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence 5667777766 3 44444444 66778999999999999998877 5899999987 5543
Q ss_pred eee-eCCCc--EEEEecCCCeEEEEeCC--------CeEEEEECC-CCc--cceeeecccceeeeEEeEEeeCCCceEEE
Q psy11885 133 GNY-TQPDK--VFTMSLCGEKFVVGTAG--------RKVCIWDLR-NMG--YIMQRRESSLKFQTRCIKCFPNKQGYVLS 198 (327)
Q Consensus 133 ~~~-~~~~~--~~~~~~~~~~~~~~~~d--------~~v~iwD~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (327)
... ..... ...++++|+.++.++.+ ..|.+||+. ++. ....... ..........++|+++.++++
T Consensus 181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECTTSCEEEEE
T ss_pred EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-CCCceEcceEECCCCeEEEEE
Confidence 332 22222 24678889999887754 379999998 341 1111111 111223556788888855555
Q ss_pred eecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE-EeeEEEEecCCCeEEEecCCCeEEEE--eCCCceeeeecCc
Q psy11885 199 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY-PVNAISFHQEYNTFATGGSDGYVNIW--DGFNKKRLCQFHR 275 (327)
Q Consensus 199 ~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~-~v~~v~~spd~~~lasgs~dg~i~iW--d~~~~~~~~~~~~ 275 (327)
..++...++.++..... .......+. . .....+. .+.+++|+|+++++++++. +.++|| |..+++ +..+..
T Consensus 260 ~~~~~~~l~~~~~~~~~--~~~l~~~~~-~-~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~ 333 (662)
T 3azo_A 260 DRTGWWNLHRVDPATGA--ATQLCRREE-E-FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAG 333 (662)
T ss_dssp CTTSSCEEEEECTTTCC--EEESSCCSS-B-SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCS
T ss_pred CCCCCeEEEEEECCCCc--eeecccccc-c-ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecC
Confidence 55565567777642211 111001110 0 0000000 0457899999999999999 999999 555554 566666
Q ss_pred CCcceEEEEECCCCCEEE
Q psy11885 276 YDTGITSLCFSYDGNVLA 293 (327)
Q Consensus 276 ~~~~v~~l~fspdg~~la 293 (327)
+...+..+. +++++.++
T Consensus 334 ~~~~~~~~~-s~~~~~~~ 350 (662)
T 3azo_A 334 PWTEWAATL-TVSGTRAV 350 (662)
T ss_dssp SCCEEEEEE-EEETTEEE
T ss_pred CCCeEEEEE-ecCCCEEE
Confidence 666676661 44454444
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=6e-13 Score=116.48 Aligned_cols=251 Identities=11% Similarity=0.039 Sum_probs=153.6
Q ss_pred CCeeEEEEecCCCcEEEEE--------ECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC---Cc--EE
Q psy11885 16 DGITAVKFAPNSNQFLLAS--------SWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD---CT--LK 81 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~--------~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D---g~--i~ 81 (327)
..+...+| ++..++.+. +.++.|.+||+.+++.... ..+...+|+ ++.+++..+.+ +. |.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 45677888 454433332 2367899999998875544 456778895 77888876654 33 77
Q ss_pred EEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECC---------------------------CeEEEEeCCCCceeee
Q psy11885 82 MFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWD---------------------------TSVKMWDPRSSRCVGN 134 (327)
Q Consensus 82 vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d---------------------------~~i~lwdl~~~~~~~~ 134 (327)
+||+.++....+..+.. +..+.|+|||+.|+.++.+ ..|.+||+.+++.+..
T Consensus 89 ~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 167 (347)
T 2gop_A 89 VADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE 167 (347)
T ss_dssp EEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE
T ss_pred EEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee
Confidence 78888776554444444 8999999999998887642 5789999988876333
Q ss_pred eeC-CCcEEEEecCCCeEEEEeCCC-------eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC----
Q psy11885 135 YTQ-PDKVFTMSLCGEKFVVGTAGR-------KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG---- 202 (327)
Q Consensus 135 ~~~-~~~~~~~~~~~~~~~~~~~d~-------~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 202 (327)
+.. ......+++++ .++++..+. ..+||.+.+.+ ....... .... ..+|+++.++..+...
T Consensus 168 l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~---~~~~--~~spdg~~l~~~~~~~~~~~ 240 (347)
T 2gop_A 168 FEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK---VSFY--AVDSDGERILLYGKPEKKYM 240 (347)
T ss_dssp EEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE---ESEE--EEEECSSCEEEEECCSSSCC
T ss_pred ecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC---ccee--eECCCCCEEEEEEccccCCc
Confidence 322 33345677777 655554432 33444433322 1111111 1111 2367777776665432
Q ss_pred --eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE-EEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcc
Q psy11885 203 --RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA-ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG 279 (327)
Q Consensus 203 --~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~-v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~ 279 (327)
...++.++ ......+ ...+ ...+.. +.|+ |+ ++++++.++.++|| +.+++.. .+..+...
T Consensus 241 ~~~~~l~~~d-~~~~~~l---~~~~---------~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~ 303 (347)
T 2gop_A 241 SEHNKLYIYD-GKEVMGI---LDEV---------DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHW 303 (347)
T ss_dssp CSSCEEEEEC-SSCEEES---STTC---------CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSE
T ss_pred cccceEEEEC-CCceEec---cccC---------CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCe
Confidence 34566666 2211111 0111 113554 8899 88 88999999999999 8765543 33334667
Q ss_pred eEEEEECCCCCEEEEEEccc
Q psy11885 280 ITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 280 v~~l~fspdg~~la~~~~~~ 299 (327)
|.+++|+| +++++++++.
T Consensus 304 v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 304 IMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp EEEEEESS--SEEEEEECSS
T ss_pred EEeeeeeC--cEEEEEcCCC
Confidence 89999999 6666666543
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=5.9e-13 Score=114.15 Aligned_cols=232 Identities=11% Similarity=0.025 Sum_probs=153.7
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceee
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETV 92 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~ 92 (327)
+..-..+++|+|+++.+++++..++.|..||..++ ......+...+.++++. ++..+++...++.|.+||..++....
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES 104 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence 34567799999975447888888999999999888 54444566678889985 56655566567899999987665443
Q ss_pred ee-cC----CccEEEEEEeCCCCEEEEE----E-------------CCCeEEEEeCCCCceeeeeeCCC--cEEEEecCC
Q psy11885 93 IG-TH----DQPIRAVEYSDEVNCILTG----S-------------WDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCG 148 (327)
Q Consensus 93 ~~-~h----~~~V~~l~~~~~~~~l~sg----s-------------~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~ 148 (327)
+. .. ...+..++++++|+.+++. + ..+.|..+|.. ++......... ..+++++++
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSG 183 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTS
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCC
Confidence 32 11 2245679999999988873 3 13467777765 44322222222 235667778
Q ss_pred CeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885 149 EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK 228 (327)
Q Consensus 149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~ 228 (327)
+.+++.+.++.|.+||+.....+. .. . .+ +....
T Consensus 184 ~~lv~~~~~~~i~~~~~~~~g~~~-------~~--~--------------------~~--~~~~~--------------- 217 (296)
T 3e5z_A 184 NLLVSDTGDNATHRYCLNARGETE-------YQ--G--------------------VH--FTVEP--------------- 217 (296)
T ss_dssp CEEEEETTTTEEEEEEECSSSCEE-------EE--E--------------------EE--ECCSS---------------
T ss_pred CEEEEeCCCCeEEEEEECCCCcCc-------CC--C--------------------eE--eeCCC---------------
Confidence 888666778899999976211000 00 0 00 00000
Q ss_pred cCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEE-CCCCCEEEEEEccccccCC
Q psy11885 229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF-SYDGNVLAIACSYNYELET 304 (327)
Q Consensus 229 ~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f-spdg~~la~~~~~~~~~~~ 304 (327)
..+..++++++|+++++. ++.|.+||.. ++.+..+..+.. +.+++| +||++.|.+++...+....
T Consensus 218 -------~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 218 -------GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp -------SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred -------CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 013468999999877776 7899999975 677777766655 899999 6999999988765554444
No 174
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=1.6e-12 Score=125.14 Aligned_cols=227 Identities=8% Similarity=-0.017 Sum_probs=149.4
Q ss_pred CCeeEEEEecCCCcEEEEEEC-CC----cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCc----------
Q psy11885 16 DGITAVKFAPNSNQFLLASSW-DC----NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCT---------- 79 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~-d~----~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~---------- 79 (327)
..+..++|||++ ++||.++. +| .|++||+.+++..........+..++|+ ++..++.++.++.
T Consensus 125 ~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 125 VALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 358899999965 56665543 33 8999999999864432222235678896 7888988887766
Q ss_pred ------EEEEEcCCCce---eeeec--CCccEEEEEEeCCCCEEEEEEC-----CCeEEEEeCCC------Cc-eeeeee
Q psy11885 80 ------LKMFDFNTQTE---TVIGT--HDQPIRAVEYSDEVNCILTGSW-----DTSVKMWDPRS------SR-CVGNYT 136 (327)
Q Consensus 80 ------i~vwd~~~~~~---~~~~~--h~~~V~~l~~~~~~~~l~sgs~-----d~~i~lwdl~~------~~-~~~~~~ 136 (327)
|++|++.++.. .+... |...+..+.|+|||++|+.++. +..|.+||+.+ ++ ....+.
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 99999987652 22222 4556789999999999887765 67899999976 42 233333
Q ss_pred CC--CcEEEEecCCCeEEEEeCC----CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEcc
Q psy11885 137 QP--DKVFTMSLCGEKFVVGTAG----RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLD 210 (327)
Q Consensus 137 ~~--~~~~~~~~~~~~~~~~~~d----~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 210 (327)
.+ .....++++|+.++..+.. ..|.+||+.+.+.. .. .. ..+.
T Consensus 284 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------~~----~~--l~~~------------------- 332 (710)
T 2xdw_A 284 DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------KW----KV--LVPE------------------- 332 (710)
T ss_dssp CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------GC----EE--EECC-------------------
T ss_pred CCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------cc----ee--ccCC-------------------
Confidence 22 2234466778887766543 35888887653210 00 00 0000
Q ss_pred CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCe--EEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885 211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY--VNIWDGFNKKRLCQFHRYDTGITSLCFSYD 288 (327)
Q Consensus 211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~--i~iWd~~~~~~~~~~~~~~~~v~~l~fspd 288 (327)
... ..+..++|++++.+++++..|+. |++|++.+++.+..+..+...+..++++|+
T Consensus 333 -~~~---------------------~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d 390 (710)
T 2xdw_A 333 -HEK---------------------DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKK 390 (710)
T ss_dssp -CSS---------------------CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTT
T ss_pred -CCC---------------------CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCC
Confidence 000 02456778888888888888885 566777677766667666667889999999
Q ss_pred CCEEEEEE
Q psy11885 289 GNVLAIAC 296 (327)
Q Consensus 289 g~~la~~~ 296 (327)
++.|+.+.
T Consensus 391 ~~~l~~~~ 398 (710)
T 2xdw_A 391 DTEIFYQF 398 (710)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 98777553
No 175
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=8.1e-13 Score=115.28 Aligned_cols=245 Identities=13% Similarity=0.099 Sum_probs=149.4
Q ss_pred CCCcEEEEECCCCeEEEEe-------cCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeC
Q psy11885 36 WDCNVSLYDITNNNLRLKY-------AHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSD 107 (327)
Q Consensus 36 ~d~~i~iwd~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~ 107 (327)
.+++|.++|.++++..... ........+++.++...++...++.|.+||..+.+.. .+. .......+++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 3789999999999865422 1123345667765555556666899999999987753 343 345678899988
Q ss_pred CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC------cEEEEecCCCeEEEEe--CCCeEEEEECCCCccceeeecccc
Q psy11885 108 EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD------KVFTMSLCGEKFVVGT--AGRKVCIWDLRNMGYIMQRRESSL 179 (327)
Q Consensus 108 ~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~d~~v~iwD~~~~~~~~~~~~~~~ 179 (327)
+++..++...++.|.+||+++++....+.... ....+...+..++++. .++.|.++|+++.+........
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-- 171 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-- 171 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--
Confidence 88444444489999999999998877665332 2222222566666665 4889999999887643222211
Q ss_pred eeeeEEeEEeeCCCceEEEeecC--------eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE
Q psy11885 180 KFQTRCIKCFPNKQGYVLSSIEG--------RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA 251 (327)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la 251 (327)
..+..+.+.+++..+++...+. ...+..++.... ++...+. .. .+ ...+.++|+|+++.|.
T Consensus 172 -~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~--~v~~~~~---~~-~g----~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 172 -IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF--TVEKQFK---FK-LG----DWPSEVQLNGTRDTLY 240 (328)
T ss_dssp -SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT--EEEEEEE---CC-TT----CCCEEEEECTTSCEEE
T ss_pred -CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC--eEEEEEe---cC-CC----CCceeEEEecCCCEEE
Confidence 1234556666655433333220 133444543321 1111111 00 00 1257899999999988
Q ss_pred EecCCCeEEEEeCCCceeeee--cCcCCcceEEEEECCCCCEEEEEE
Q psy11885 252 TGGSDGYVNIWDGFNKKRLCQ--FHRYDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 252 sgs~dg~i~iWd~~~~~~~~~--~~~~~~~v~~l~fspdg~~la~~~ 296 (327)
++.. .|.+||..+++.... +.........++++|++..|.++.
T Consensus 241 v~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 241 WINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp EESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred EEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 7754 899999988765321 121134578999999544444444
No 176
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.55 E-value=1.8e-11 Score=105.46 Aligned_cols=230 Identities=10% Similarity=0.091 Sum_probs=145.4
Q ss_pred CCCeeEEEEecCCCcEEEE-------EECCCcEEEEECCCCeEEEEec-----CCCceeeEEEeCC-ceEEEEecCCcEE
Q psy11885 15 EDGITAVKFAPNSNQFLLA-------SSWDCNVSLYDITNNNLRLKYA-----HSDPVLDCCFQDA-VHSFSGGLDCTLK 81 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~-----h~~~v~~~~~~~~-~~~~sgs~Dg~i~ 81 (327)
-....+++|+++ +.++++ +..++.|.+||..+++...... +...+..+++... ..++.++....|.
T Consensus 17 ~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 346789999985 466666 5678999999988887544332 3456778888543 5555555555799
Q ss_pred EEEcCCCceeee-ec-----CCccEEEEEEeCCCCEEEEEECC---------------CeEEEEeCCCCceeeeeeC--C
Q psy11885 82 MFDFNTQTETVI-GT-----HDQPIRAVEYSDEVNCILTGSWD---------------TSVKMWDPRSSRCVGNYTQ--P 138 (327)
Q Consensus 82 vwd~~~~~~~~~-~~-----h~~~V~~l~~~~~~~~l~sgs~d---------------~~i~lwdl~~~~~~~~~~~--~ 138 (327)
+||.+ +....+ .. ....+.+++++++|+..++...+ +.|..||.. ++....... .
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~ 173 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF 173 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC
Confidence 99987 554333 21 12357899999999877776554 578888875 544322221 1
Q ss_pred CcEEEEe----cCCCeEEEE-eCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCc
Q psy11885 139 DKVFTMS----LCGEKFVVG-TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGP 213 (327)
Q Consensus 139 ~~~~~~~----~~~~~~~~~-~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 213 (327)
...+.++ ++++.++++ ..++.|.+||++.... +.. ... .. .+..
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~--------~~~-~~~-----------~~---------~~~~-- 222 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK--------IEN-KKV-----------WG---------HIPG-- 222 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE--------EEE-EEE-----------EE---------ECCC--
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc--------ccc-ceE-----------EE---------ECCC--
Confidence 2234555 556555554 4577888888641100 000 000 00 0000
Q ss_pred ccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEE
Q psy11885 214 EMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293 (327)
Q Consensus 214 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la 293 (327)
+. ...+..++++++|.++++...++.|.+||..+++.+..+..+...+.+++|+|||+.|.
T Consensus 223 -----------~~--------~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 223 -----------TH--------EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp -----------CS--------SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred -----------CC--------CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence 00 00245689999999888887889999999876766655555556789999999999776
Q ss_pred EEEc
Q psy11885 294 IACS 297 (327)
Q Consensus 294 ~~~~ 297 (327)
+++.
T Consensus 284 v~~~ 287 (314)
T 1pjx_A 284 VTEH 287 (314)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6654
No 177
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.54 E-value=1.8e-12 Score=125.36 Aligned_cols=265 Identities=11% Similarity=0.037 Sum_probs=157.4
Q ss_pred eEEEEecCCCcEEEEEECC---------CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCC
Q psy11885 19 TAVKFAPNSNQFLLASSWD---------CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 19 ~~i~fs~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
..++|||+ +++|+.++.+ +.+.+||+.++++.....|...+...+|+ ++..++.++ |+.|.+|++.++
T Consensus 65 ~~~~~Spd-g~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPD-GQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred cceEECCC-CCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence 45899996 5777877765 56679999999977666677788999995 788888774 889999999877
Q ss_pred ceeeee--cCCccE-----------------EEEEEeCCCCEEEEEECCC------------------------------
Q psy11885 89 TETVIG--THDQPI-----------------RAVEYSDEVNCILTGSWDT------------------------------ 119 (327)
Q Consensus 89 ~~~~~~--~h~~~V-----------------~~l~~~~~~~~l~sgs~d~------------------------------ 119 (327)
....+. ++...+ ..+.|||||+.|+.++.|.
T Consensus 143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 654332 222222 3589999999999876432
Q ss_pred ------eEEEEeCCC---Cce--eeeeeC------CCc---EEEEecCCCeEEEEeC----CCeEEEEECCCCc----c-
Q psy11885 120 ------SVKMWDPRS---SRC--VGNYTQ------PDK---VFTMSLCGEKFVVGTA----GRKVCIWDLRNMG----Y- 170 (327)
Q Consensus 120 ------~i~lwdl~~---~~~--~~~~~~------~~~---~~~~~~~~~~~~~~~~----d~~v~iwD~~~~~----~- 170 (327)
+|++||+.+ +++ ...+.. ... ...++++++.++.... +..|.+||+.+++ .
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 588899988 732 222322 111 2356777875555432 2379999998765 1
Q ss_pred -ceee--ecccceee---eEEeEEeeCCCceE-EEe-ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEE
Q psy11885 171 -IMQR--RESSLKFQ---TRCIKCFPNKQGYV-LSS-IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAIS 242 (327)
Q Consensus 171 -~~~~--~~~~~~~~---~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~ 242 (327)
+... .....-.. .....++|+++.++ ..+ .+|...|+.++....... .+. ... +.+..+.
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~---~lT-----~g~----~~v~~~~ 370 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT---FIT-----KGT----WEVIGIE 370 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE---ESC-----CSS----SCEEEEE
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE---ecc-----cCC----EEEEEEE
Confidence 1110 00110000 12456788887765 443 456667777664432111 111 000 1122222
Q ss_pred EecCCCeE-EEecC----CC--eEEEEeCCCceeeeecC----cCCcceEEEEECCCCCEEEEEEcc
Q psy11885 243 FHQEYNTF-ATGGS----DG--YVNIWDGFNKKRLCQFH----RYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 243 ~spd~~~l-asgs~----dg--~i~iWd~~~~~~~~~~~----~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
.+|++.| ++++. .+ .|+..++..++....+. .........+|||||++++..++.
T Consensus 371 -~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~ 436 (740)
T 4a5s_A 371 -ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSG 436 (740)
T ss_dssp -EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred -EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCC
Confidence 2445554 45544 23 34444554443322332 123467899999999999888654
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.54 E-value=1.2e-11 Score=115.39 Aligned_cols=260 Identities=15% Similarity=0.089 Sum_probs=159.9
Q ss_pred CCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcC--CCcee-eeecCCccEEE
Q psy11885 27 SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFN--TQTET-VIGTHDQPIRA 102 (327)
Q Consensus 27 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~--~~~~~-~~~~h~~~V~~ 102 (327)
++.++++...++.|.++|..++++.........+..++|+ ++.++++++.|+.|.+||+. +.+.. .+.. ......
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ 244 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS 244 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence 3456677778899999999999876665555567788885 78899999999999999995 44332 2332 233578
Q ss_pred EEEe----CCCCEEEEEEC-CCeEEEEeCCCCceeeeeeCCC----------------------------------c---
Q psy11885 103 VEYS----DEVNCILTGSW-DTSVKMWDPRSSRCVGNYTQPD----------------------------------K--- 140 (327)
Q Consensus 103 l~~~----~~~~~l~sgs~-d~~i~lwdl~~~~~~~~~~~~~----------------------------------~--- 140 (327)
++|+ |||++++++.+ +++|.++|..+.+.++.+.... .
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 9999 69998887655 5999999998887765543110 0
Q ss_pred ---------------------EEEEecCCCeEEEEe-CCCeEEEEECCCCccceeeec-ccceeeeEEeEE-eeCCCceE
Q psy11885 141 ---------------------VFTMSLCGEKFVVGT-AGRKVCIWDLRNMGYIMQRRE-SSLKFQTRCIKC-FPNKQGYV 196 (327)
Q Consensus 141 ---------------------~~~~~~~~~~~~~~~-~d~~v~iwD~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~ 196 (327)
...+++++.+++++. .+++|.++|+++++....... ...+.+.+...+ .|+...+.
T Consensus 325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~ 404 (567)
T 1qks_A 325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 404 (567)
T ss_dssp EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEE
Confidence 113455566666554 678999999998765433322 222221122223 44433333
Q ss_pred -EEee-cCeEEEEEccCCccc---ccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC-------CCeEEEEeC
Q psy11885 197 -LSSI-EGRAAVEYLDTGPEM---QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-------DGYVNIWDG 264 (327)
Q Consensus 197 -~~~~-~~~~~i~~~~~~~~~---~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~-------dg~i~iWd~ 264 (327)
++.. ++.+.+...+..... .++...+.. .+. .-..+..||++++|.+... .++|.++|+
T Consensus 405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-----~g~----g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-----LGG----GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-----SCS----CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred EeCCCCCCeEEEecCCCCCCccccCEEEEEEec-----CCC----CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 3332 355555444431110 011111111 000 0123778999998887552 359999998
Q ss_pred CCc-----eee-eecC--------cCCcceEEEEECCCCCEEEEEE
Q psy11885 265 FNK-----KRL-CQFH--------RYDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 265 ~~~-----~~~-~~~~--------~~~~~v~~l~fspdg~~la~~~ 296 (327)
.+. ... ..+. .....+..+.|+|||+++..+.
T Consensus 476 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~ 521 (567)
T 1qks_A 476 KAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSV 521 (567)
T ss_dssp GGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEE
T ss_pred CcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEe
Confidence 876 111 1221 1234689999999999988774
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=2.3e-11 Score=106.03 Aligned_cols=249 Identities=9% Similarity=0.025 Sum_probs=153.7
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEE-eCCceEEEEe-cCCcEEEEEcCCCcee-e
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSGG-LDCTLKMFDFNTQTET-V 92 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~-~~~~~~~sgs-~Dg~i~vwd~~~~~~~-~ 92 (327)
.....+++.. ++++++...++.|.+||..+++.............+++ +++ .++.+. .++.|.+||..+++.. .
T Consensus 44 ~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEE
Confidence 3467788864 45666666789999999999987555554566788888 555 666555 7999999999887643 2
Q ss_pred eecCC-----ccEEEEEEeCCCCEEEEEE--CCCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCC------
Q psy11885 93 IGTHD-----QPIRAVEYSDEVNCILTGS--WDTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAG------ 157 (327)
Q Consensus 93 ~~~h~-----~~V~~l~~~~~~~~l~sgs--~d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d------ 157 (327)
+.... .....+++ +++.++.+. .+++|.++|+++++.+..+.... ..+.++++|+.+++...+
T Consensus 121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCcc
Confidence 33222 13456666 345566555 48999999999998877765432 234556666655544433
Q ss_pred ----CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCee
Q psy11885 158 ----RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233 (327)
Q Consensus 158 ----~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~ 233 (327)
+.|.++|.++.+......... ...+..+++.|+++.+.++.. .+ +.++...........+...
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v--~~~d~~t~~~~~~~~~~~~-------- 265 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DI--WRMPVEADRVPVRPFLEFR-------- 265 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SE--EEEETTCSSCCSSCSBCCC--------
T ss_pred ccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EE--EEEECCCCceeeeeeecCC--------
Confidence 789999998765332211110 113467778877766655543 33 3344322111000000000
Q ss_pred eEEEeeEEEEec-CCCeEEEe----cCCCeEEEEeCCCceeeeecCcCCcceEEEEE
Q psy11885 234 KIYPVNAISFHQ-EYNTFATG----GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCF 285 (327)
Q Consensus 234 ~~~~v~~v~~sp-d~~~lasg----s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f 285 (327)
......++++| ++..+++. ..++.|.+||.. ++.+.++.....| ..++|
T Consensus 266 -~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P-~~~~~ 319 (328)
T 3dsm_A 266 -DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP-GAFCW 319 (328)
T ss_dssp -SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE-EEEEE
T ss_pred -CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc-ceEEE
Confidence 01356899999 55566666 678999999987 8877776532222 45555
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=3.5e-11 Score=101.32 Aligned_cols=221 Identities=8% Similarity=-0.001 Sum_probs=139.4
Q ss_pred CeeEEEEecCCCcEEE-EEECCCcEEEEECCCCeEEEE-ecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee
Q psy11885 17 GITAVKFAPNSNQFLL-ASSWDCNVSLYDITNNNLRLK-YAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI 93 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~-~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~ 93 (327)
...++++++++ .+++ +.+.++.|.+||..++..... ..+...+.++++. ++. ++.+..++.|.+||.++.....+
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEEC
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEeee
Confidence 78899999964 5666 446788999999866553322 1233456778885 455 55444488999999877654433
Q ss_pred e-cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeee-eC--CCcEEEEecCCCeEEEEeCCCeEEEEECCCCc
Q psy11885 94 G-THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY-TQ--PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMG 169 (327)
Q Consensus 94 ~-~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~ 169 (327)
. .....+..++++++++.+++...++.|.+|+..+....... .. ....+.+++++..+++...++.|.+||..+..
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 2 22356889999999987777777899999987654432211 11 11235566667655555567788888865421
Q ss_pred cceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885 170 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249 (327)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~ 249 (327)
.. . ... .. . ..+..++++|+|..
T Consensus 183 ~~-------------------------~-----------~~~-~~---~-----------------~~p~~i~~d~~g~l 205 (270)
T 1rwi_B 183 QV-------------------------V-----------LPF-TD---I-----------------TAPWGIAVDEAGTV 205 (270)
T ss_dssp EE-------------------------E-----------CCC-SS---C-----------------CSEEEEEECTTCCE
T ss_pred eE-------------------------e-----------ecc-cC---C-----------------CCceEEEECCCCCE
Confidence 00 0 000 00 0 02457899999988
Q ss_pred EEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885 250 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 250 lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~ 296 (327)
+++...++.|.+|+............+...+.+++++|+|+++++..
T Consensus 206 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 206 YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp EEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred EEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence 88888889999999765433322222224578999999998766654
No 181
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.51 E-value=3.9e-12 Score=113.00 Aligned_cols=248 Identities=11% Similarity=0.010 Sum_probs=142.6
Q ss_pred CCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-CCCceeeEEE--e-CCceEEE---------------
Q psy11885 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSDPVLDCCF--Q-DAVHSFS--------------- 73 (327)
Q Consensus 13 ~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~--~-~~~~~~s--------------- 73 (327)
.+...+..++|+|+ ++.|+.++.++.|++||+.+++...... +...+....+ + ++..++.
T Consensus 78 ~~~~~~~~~~~spd-g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 78 GRGDNTFGGFLSPD-DDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp SSCBCSSSCEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred CCCCCccceEEcCC-CCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence 33344557789996 5788888889999999999988654443 3333433333 3 5555542
Q ss_pred -------EecCCcEEEEEcCCCceeeeecCCccEEEEEEeC-CCCEEEEEECC------CeEEEEeCCCCceeeeeeCCC
Q psy11885 74 -------GGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSD-EVNCILTGSWD------TSVKMWDPRSSRCVGNYTQPD 139 (327)
Q Consensus 74 -------gs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~sgs~d------~~i~lwdl~~~~~~~~~~~~~ 139 (327)
.+.+..|.+||+.++....+..+...+..+.|+| +|+.|+....+ ..|.++|+.+++.........
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE 236 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred hhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence 2245789999999887766666777789999999 99998877763 378888886654332222221
Q ss_pred --cE--EEEecCCCeEEEEeC--CC---eEEEEECCCCccceeeecccceee---eEEeEEeeCCCceEEEee-------
Q psy11885 140 --KV--FTMSLCGEKFVVGTA--GR---KVCIWDLRNMGYIMQRRESSLKFQ---TRCIKCFPNKQGYVLSSI------- 200 (327)
Q Consensus 140 --~~--~~~~~~~~~~~~~~~--d~---~v~iwD~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------- 200 (327)
.+ ..++++|+.++..+. ++ .|.+||+.+++............. .....++|+++.++....
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 316 (388)
T 3pe7_A 237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI 316 (388)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence 22 357778887765443 22 499999987653211111110000 111256777776665432
Q ss_pred cCeEEEEEccCCcccccceeeeeeeeeccCC--eeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeC
Q psy11885 201 EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG--IEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDG 264 (327)
Q Consensus 201 ~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~--~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~ 264 (327)
.+...++.++...... ..+..+...-.. ......+.+++|+|||+.|+..+ .+|...||.+
T Consensus 317 ~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp CCCCEEEEEETTTTEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCCCEEEEEeccCCce---EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 3344555565433211 111111110000 00000146789999999888655 4677777753
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=3.8e-11 Score=102.04 Aligned_cols=206 Identities=9% Similarity=0.012 Sum_probs=146.4
Q ss_pred CcEEEEEECCCcEEEEECCCCeEEEEec-CC-CceeeEEE-eCCceEEEEecCCcEEEEEcCCCcee-eeecC-CccEEE
Q psy11885 28 NQFLLASSWDCNVSLYDITNNNLRLKYA-HS-DPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET-VIGTH-DQPIRA 102 (327)
Q Consensus 28 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~-~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h-~~~V~~ 102 (327)
+++|++++.|+.|++||.++++..-.+. +. ..+.++.+ +++..++ +.++.|..||. +++.. .+..+ ...+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 4789999999999999999999765554 33 35677777 4666666 45788999998 45443 33333 346888
Q ss_pred EEEeCCCCEEEEEEC-CCeEEEEeCCCCceeeeeeCC---------CcEEEEecCCCeEEEEeCCCeEEEEECCCCccce
Q psy11885 103 VEYSDEVNCILTGSW-DTSVKMWDPRSSRCVGNYTQP---------DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIM 172 (327)
Q Consensus 103 l~~~~~~~~l~sgs~-d~~i~lwdl~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~ 172 (327)
+.+.++|+.+++.+. +++|..+|. +++.++.+... ........+|+.+++.+.++.|..||.. ++.+
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~- 158 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL- 158 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE-
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE-
Confidence 999999999999887 888888885 67776665421 1123456678888888888899999876 4321
Q ss_pred eeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEE
Q psy11885 173 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT 252 (327)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~las 252 (327)
|.+.... .+.++.+.+++.++++
T Consensus 159 ----------------------------------w~~~~~~-----------------------~~~~~~~~~~g~~~v~ 181 (276)
T 3no2_A 159 ----------------------------------NSVKLSG-----------------------TPFSSAFLDNGDCLVA 181 (276)
T ss_dssp ----------------------------------EEEECSS-----------------------CCCEEEECTTSCEEEE
T ss_pred ----------------------------------EEEECCC-----------------------CccceeEcCCCCEEEE
Confidence 0011000 1223456789999999
Q ss_pred ecCCCeEEEEeCCCceeeeecCcCC------cceEEEEECCCCCEEEEEE
Q psy11885 253 GGSDGYVNIWDGFNKKRLCQFHRYD------TGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 253 gs~dg~i~iWd~~~~~~~~~~~~~~------~~v~~l~fspdg~~la~~~ 296 (327)
++.++.|..+|..+|+.+.++.... ..+..++..++|.++++..
T Consensus 182 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 182 CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 9888999999999899888775322 1278899999999998763
No 183
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.48 E-value=3.4e-10 Score=100.34 Aligned_cols=265 Identities=9% Similarity=-0.062 Sum_probs=154.1
Q ss_pred EEecCCCcEEEEEEC--CC---cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEe----------cCCcEEEEEc
Q psy11885 22 KFAPNSNQFLLASSW--DC---NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGG----------LDCTLKMFDF 85 (327)
Q Consensus 22 ~fs~~~~~~l~s~~~--d~---~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs----------~Dg~i~vwd~ 85 (327)
...|++ +++.+... .+ +|.++|..++++.....-.... .++++ ++.+++.+. .++.|.+||.
T Consensus 27 ~~~~~~-~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADG-RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCC-CEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 344644 55555442 22 8899999998865444322223 77885 788888765 3678999999
Q ss_pred CCCcee-eeecC-------CccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeee-eeCCCcEEEEecC-CCeEEE
Q psy11885 86 NTQTET-VIGTH-------DQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGN-YTQPDKVFTMSLC-GEKFVV 153 (327)
Q Consensus 86 ~~~~~~-~~~~h-------~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 153 (327)
.+.+.. .+... ...-..+.++|||++|+.+.. ++.|.++| ++++.+.. +..+..+ .+.+. +..+++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~-~~~~~~~~~~~~ 182 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCY-HIHPGAPSTFYL 182 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceE-EEEeCCCceEEE
Confidence 876542 12110 122457899999999998874 58899999 99998888 7665543 33344 345677
Q ss_pred EeCCCeEEEEECCCCccceeeec-----ccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885 154 GTAGRKVCIWDLRNMGYIMQRRE-----SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK 228 (327)
Q Consensus 154 ~~~d~~v~iwD~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~ 228 (327)
.+.|+++.++|. +++....... ...+.. ....+.+++..++..+..+.+.+ .+.......+...+......
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~v~v--id~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLL-TQPAQANKSGRIVWPVYSGKILQ--ADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCccee-ecceeEecCCEEEEEcCCceEEE--EeccCCcceEeeeeeecCCc
Confidence 788999999999 6654311110 000000 11122333344444444444433 33321111111011000000
Q ss_pred cCCeeeEE--EeeEEEEecCCCeEEEecC----------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC-EEEEE
Q psy11885 229 EDGIEKIY--PVNAISFHQEYNTFATGGS----------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN-VLAIA 295 (327)
Q Consensus 229 ~~~~~~~~--~v~~v~~spd~~~lasgs~----------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~-~la~~ 295 (327)
. ....+. ....++++||++.+.++.. ++.|.+.|..+++.+.++... ...+.++|||||+ +|.++
T Consensus 259 ~-~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 259 R-KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred c-cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEE
Confidence 0 000000 1223788999988777543 358999999999988887533 3468999999999 55554
Q ss_pred E
Q psy11885 296 C 296 (327)
Q Consensus 296 ~ 296 (327)
.
T Consensus 337 ~ 337 (373)
T 2mad_H 337 S 337 (373)
T ss_pred c
Confidence 3
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.47 E-value=5e-12 Score=112.37 Aligned_cols=240 Identities=8% Similarity=-0.065 Sum_probs=135.8
Q ss_pred EEECCCCeEEE-EecCCCc-----eeeEEEe-CCceEEEEec-C--CcEEEEEcCCCceeeeecCCccE-EEEEEeCCCC
Q psy11885 42 LYDITNNNLRL-KYAHSDP-----VLDCCFQ-DAVHSFSGGL-D--CTLKMFDFNTQTETVIGTHDQPI-RAVEYSDEVN 110 (327)
Q Consensus 42 iwd~~~~~~~~-~~~h~~~-----v~~~~~~-~~~~~~sgs~-D--g~i~vwd~~~~~~~~~~~h~~~V-~~l~~~~~~~ 110 (327)
..|..+++... ...+... +..++|+ ++.+++.... + ..|.+||+.++....+..+...+ ..+.|+|||+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 34666665332 2223222 5566775 7777765543 2 36788898877655444333333 3378999999
Q ss_pred EEEEEECCCeEEEEeCCCCceeeeeeCCCcE------E----------------EEecCCCeEEEE-----eCCCeEEEE
Q psy11885 111 CILTGSWDTSVKMWDPRSSRCVGNYTQPDKV------F----------------TMSLCGEKFVVG-----TAGRKVCIW 163 (327)
Q Consensus 111 ~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~------~----------------~~~~~~~~~~~~-----~~d~~v~iw 163 (327)
.|+.++.++.|.+||+.+++.......+... + .++++++.++.. ..+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 9999999999999999888765444422211 0 112233333322 345579999
Q ss_pred ECCCCccceeeecccceeeeEEeEEee-CCCceEEEeecCe----EEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885 164 DLRNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGR----AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV 238 (327)
Q Consensus 164 D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v 238 (327)
|+.+++..... . .......+.++| ++..++..+.+.. ..++.++..... ...... +. ....+
T Consensus 174 d~~~g~~~~~~-~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~-~~-------~~~~~ 240 (396)
T 3c5m_A 174 DIETGELEVIH-Q--DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKE-HA-------EGESC 240 (396)
T ss_dssp ETTTCCEEEEE-E--ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSC-CC-------TTEEE
T ss_pred ECCCCcEEeec-c--CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeec-cC-------CCccc
Confidence 99876532111 1 111234456677 4544444433322 344444432211 000000 00 01236
Q ss_pred eEEEEecCCCeEEEecCC-----CeEEEEeCCCceeeeecCcCCcceEEEEECC-CCCEEEEEEc
Q psy11885 239 NAISFHQEYNTFATGGSD-----GYVNIWDGFNKKRLCQFHRYDTGITSLCFSY-DGNVLAIACS 297 (327)
Q Consensus 239 ~~v~~spd~~~lasgs~d-----g~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp-dg~~la~~~~ 297 (327)
..++|+|||+.|+.++.+ +.|++||+.+++..... ... ... ++||| ||++|++++.
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~-~~~-~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMP-PCS-HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECC-SEE-EEEECSSSSEEEEEEC
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCC-CCC-CCccCCCCceEEEecC
Confidence 778999999988876544 45999999877543321 111 223 89999 9999987654
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=8.5e-12 Score=119.82 Aligned_cols=239 Identities=8% Similarity=-0.063 Sum_probs=143.7
Q ss_pred CCCeeEEEEecCCCcEEE-E----EECCCcEEEEECCCCeEEEEecCCCce--eeEEEe-CCceEEEEecCCc-------
Q psy11885 15 EDGITAVKFAPNSNQFLL-A----SSWDCNVSLYDITNNNLRLKYAHSDPV--LDCCFQ-DAVHSFSGGLDCT------- 79 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~-s----~~~d~~i~iwd~~~~~~~~~~~h~~~v--~~~~~~-~~~~~~sgs~Dg~------- 79 (327)
...+..++|||++ ++|| + |+.+.+|++||+.+++... ..+-..+ ..++|+ ++..++.++.|..
T Consensus 120 ~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 120 TVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp CEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 3468899999975 5666 3 3334689999999988541 1111222 577895 7788888888776
Q ss_pred ------EEEEEcCCCce--ee-ee--cCCccEEEEEEeCCCCEEEEEECCC----eEEEEeCCCCceeeeeeCCC-cEEE
Q psy11885 80 ------LKMFDFNTQTE--TV-IG--THDQPIRAVEYSDEVNCILTGSWDT----SVKMWDPRSSRCVGNYTQPD-KVFT 143 (327)
Q Consensus 80 ------i~vwd~~~~~~--~~-~~--~h~~~V~~l~~~~~~~~l~sgs~d~----~i~lwdl~~~~~~~~~~~~~-~~~~ 143 (327)
|++|++.++.. .. .. .|...+..+.|+|||++|+.++.++ .|.+||..+++......... ....
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 277 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV 277 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE
Confidence 99999987752 22 22 3445788999999999998877666 77888776554333222222 2222
Q ss_pred EecCCCeEEEEeC----CCeEEEEECCCCcc--ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc
Q psy11885 144 MSLCGEKFVVGTA----GRKVCIWDLRNMGY--IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK 217 (327)
Q Consensus 144 ~~~~~~~~~~~~~----d~~v~iwD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (327)
+.+++. ++..+. ++.|.+||+.+.+. ...............+.+. ++..++....++...++.++.....
T Consensus 278 ~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-- 353 (695)
T 2bkl_A 278 HAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP-- 353 (695)
T ss_dssp EEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE--
T ss_pred EecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe--
Confidence 335566 655553 57899999976542 1111111101112333444 3334445556677777776632110
Q ss_pred ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE----EecCCCeEEEEeCCCce
Q psy11885 218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA----TGGSDGYVNIWDGFNKK 268 (327)
Q Consensus 218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la----sgs~dg~i~iWd~~~~~ 268 (327)
...+..+ + ...+..++++|+++.|+ +....++|++||+.+++
T Consensus 354 -~~~l~~~---~-----~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 354 -VRTVQLP---G-----VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp -EEECCCS---S-----SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred -eEEecCC---C-----CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 0111111 0 01356788899998877 34445789999988765
No 186
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=5e-11 Score=105.06 Aligned_cols=274 Identities=12% Similarity=0.027 Sum_probs=162.0
Q ss_pred eEEEEecCCCcEEEEEEC-----CCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEe----------cCCcEEE
Q psy11885 19 TAVKFAPNSNQFLLASSW-----DCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGG----------LDCTLKM 82 (327)
Q Consensus 19 ~~i~fs~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs----------~Dg~i~v 82 (327)
......|++. .+.+... ++.|.+.|..+++......-..... ++++ ++.+++.++ .++.|.+
T Consensus 36 ~~~~~~pd~~-~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 36 ILEAPAPDAR-RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp BCCCCCCCTT-EEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eeeccCCCCC-EEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 3456678654 4444443 6899999999998655443222223 7885 788887665 3678999
Q ss_pred EEcCCCcee-eeecC-------CccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEE
Q psy11885 83 FDFNTQTET-VIGTH-------DQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFV 152 (327)
Q Consensus 83 wd~~~~~~~-~~~~h-------~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
||..+.+.. .+... ...-..+.++|||++++.+.. ++.|.++|+++++.+.++..+............++
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~ 193 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 193 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeE
Confidence 999887643 22211 113456899999999998864 68999999999999998877654322333355677
Q ss_pred EEeCCCeEEEEECCCCccceeeeccccee---ee-EEeEEeeCCCceEEEeecCeEEEEEccCCcccccceee-eeeeee
Q psy11885 153 VGTAGRKVCIWDLRNMGYIMQRRESSLKF---QT-RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYA-FKCHRI 227 (327)
Q Consensus 153 ~~~~d~~v~iwD~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~h~~ 227 (327)
+.+.||++-+.++.....+.......... +. ....+......++..+.++.+.+............... +....
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~- 272 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE- 272 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHH-
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccc-
Confidence 88899999999997633222211111100 00 01122212223344445555444333222110000000 00000
Q ss_pred ccCCeeeEEEeeEEEEecCCCeEEEecC----------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC-EEEEEE
Q psy11885 228 KEDGIEKIYPVNAISFHQEYNTFATGGS----------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN-VLAIAC 296 (327)
Q Consensus 228 ~~~~~~~~~~v~~v~~spd~~~lasgs~----------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~-~la~~~ 296 (327)
...+.. -.....++++|+++.+.+.-. .++|.+.|..+++.+..+... .++++|+|||||+ +|.++.
T Consensus 273 ~~~g~~-p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn 350 (386)
T 3sjl_D 273 RADGWR-PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALS 350 (386)
T ss_dssp HHTTEE-ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEE
T ss_pred cccccc-CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEc
Confidence 000000 001234788999988877532 357999999999998887543 3678999999997 666654
Q ss_pred c
Q psy11885 297 S 297 (327)
Q Consensus 297 ~ 297 (327)
.
T Consensus 351 ~ 351 (386)
T 3sjl_D 351 T 351 (386)
T ss_dssp T
T ss_pred C
Confidence 3
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.46 E-value=7.9e-10 Score=94.10 Aligned_cols=261 Identities=7% Similarity=-0.006 Sum_probs=157.5
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
+...+.++++++++ .++++...++.|.+||.. ++..... .+...+..+++. ++...++...++.|..||.+. ..
T Consensus 13 ~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~ 89 (299)
T 2z2n_A 13 QDTGPYGITVSDKG-KVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-II 89 (299)
T ss_dssp SSCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE
T ss_pred cCCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cE
Confidence 34689999999964 555555557899999998 6644332 234567788884 555555655578899999763 33
Q ss_pred eee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee-ee-CCCcE--EEEecCCCeEEEEeCCCeEEEEE
Q psy11885 91 TVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN-YT-QPDKV--FTMSLCGEKFVVGTAGRKVCIWD 164 (327)
Q Consensus 91 ~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~d~~v~iwD 164 (327)
..+ ......+..++++++++..++...++.|..||. +++.... .. ..... +.+...+..+++...++.|..||
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence 222 224456889999999988887777899999998 5543322 11 11223 34455565555555678999999
Q ss_pred CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885 165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH 244 (327)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 244 (327)
. +.+.......... ..+..+.+.+++..++.....+.+. .++..... ...... . ....+.+++++
T Consensus 169 ~-~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~~i~--~~~~~g~~--~~~~~~-----~----~~~~~~~i~~~ 233 (299)
T 2z2n_A 169 E-SGDITEFKIPTPA-SGPVGITKGNDDALWFVEIIGNKIG--RITTSGEI--TEFKIP-----T----PNARPHAITAG 233 (299)
T ss_dssp T-TCCEEEEECSSTT-CCEEEEEECTTSSEEEEETTTTEEE--EECTTCCE--EEEECS-----S----TTCCEEEEEEC
T ss_pred C-CCcEEEeeCCCCC-CcceeEEECCCCCEEEEccCCceEE--EECCCCcE--EEEECC-----C----CCCCceeEEEC
Confidence 8 4432211011111 1234566666555333332334333 34431111 011000 0 00136789999
Q ss_pred cCCCeEEEecCCCeEEEEeCCCceeeee-cCcCCcceEEEEECCCCCEEEEE
Q psy11885 245 QEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYDGNVLAIA 295 (327)
Q Consensus 245 pd~~~lasgs~dg~i~iWd~~~~~~~~~-~~~~~~~v~~l~fspdg~~la~~ 295 (327)
|+|+.+++...++.|..||. +++.... +......+.++++ ++|+++++.
T Consensus 234 ~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~ 283 (299)
T 2z2n_A 234 AGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAM 283 (299)
T ss_dssp STTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEE
T ss_pred CCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEe
Confidence 99998887767899999997 4443221 2333456899999 999887765
No 188
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.45 E-value=1.4e-11 Score=109.05 Aligned_cols=190 Identities=11% Similarity=0.011 Sum_probs=129.8
Q ss_pred ceeeEEEe-CCceEEEEecCCcEEEEEcCCCc-----------eeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeC
Q psy11885 59 PVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQT-----------ETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDP 126 (327)
Q Consensus 59 ~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl 126 (327)
++..++++ ....+++|+.+ .+++|+++... ......+.. |..|+| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 57778885 56677788877 56669865322 112334566 999999 88999998 8899999999
Q ss_pred CCCceeeeee-CCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885 127 RSSRCVGNYT-QPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA 205 (327)
Q Consensus 127 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (327)
++........ ....+..+.+.+..+++++.||.|.+||+++.... .
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~----------~----------------------- 160 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTK----------Q----------------------- 160 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE----------E-----------------------
T ss_pred hhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCccc----------c-----------------------
Confidence 8754332222 12234455555556899999999999999753210 0
Q ss_pred EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee--eeec------C---
Q psy11885 206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQF------H--- 274 (327)
Q Consensus 206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~--~~~~------~--- 274 (327)
....|.|++|||+| ++.|..||++++|+...++. ...+ .
T Consensus 161 ----------------------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~ 210 (388)
T 1xip_A 161 ----------------------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP 210 (388)
T ss_dssp ----------------------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSC
T ss_pred ----------------------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccccccc
Confidence 00137799999999 78899999999998776553 3334 2
Q ss_pred cCCcceEEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEE
Q psy11885 275 RYDTGITSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRH 318 (327)
Q Consensus 275 ~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (327)
+|+..|.+|.|.+++++|++-....-.. .++.-|...+||+.
T Consensus 211 ~~~~~V~sI~wl~~~~flv~y~~~~~~~--~~~~~~~~~~~ii~ 252 (388)
T 1xip_A 211 VEEYSPLSVTILSPQDFLAVFGNVISET--DDEVSYDQKMYIIK 252 (388)
T ss_dssp TTTSEEEEEEESSSSEEEEEEECCCCSS--CSSCCCCEEEEEEE
T ss_pred CCCeeEEEEEEecCCeEEEEEcCCCCCc--CcccCCcceEEEEE
Confidence 3566799999999999998554332222 22323566899988
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.45 E-value=5.6e-11 Score=103.84 Aligned_cols=231 Identities=9% Similarity=0.061 Sum_probs=138.8
Q ss_pred CCeeEEEEecCCCcEEEEEECC---C--cEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC------------
Q psy11885 16 DGITAVKFAPNSNQFLLASSWD---C--NVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD------------ 77 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d---~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D------------ 77 (327)
..+..++|+|++ +.|+.++.+ + .|.+||+.+++......+.. +..++|+ ++..++.++.+
T Consensus 59 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357889999965 566666543 3 48888998888665555444 8888995 77778776642
Q ss_pred ---------------CcEEEEEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCC-------eEEEEeCCCCceeee
Q psy11885 78 ---------------CTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDT-------SVKMWDPRSSRCVGN 134 (327)
Q Consensus 78 ---------------g~i~vwd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~-------~i~lwdl~~~~~~~~ 134 (327)
..|.+||+.++.. ..+.. . .+..+.|+|+| .++++..+. ..++|.+.+++....
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l 213 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM 213 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe
Confidence 5688999988765 44443 3 78899999999 888876652 334444335543322
Q ss_pred eeCCCcEEEEecCCCeEEEEeCC--------CeEEEEECCCCccceeeecccceeeeEE-eEEeeCCCceEEEeecCeEE
Q psy11885 135 YTQPDKVFTMSLCGEKFVVGTAG--------RKVCIWDLRNMGYIMQRRESSLKFQTRC-IKCFPNKQGYVLSSIEGRAA 205 (327)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~d--------~~v~iwD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 205 (327)
... .....++++|+.++.++.+ ..|.+|| +.+.. .. .......... +.+. ++ .+++++.++...
T Consensus 214 ~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l-~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 214 FEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GI-LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ES-STTCCSEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred ccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceE-ec-cccCCcccCCccEEc-Cc-EEEEEecCCcEE
Confidence 222 3444557889888877644 3688888 33211 11 1111112232 4555 44 555666677777
Q ss_pred EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeE-EEEeCCCceeeeecCcCC
Q psy11885 206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYV-NIWDGFNKKRLCQFHRYD 277 (327)
Q Consensus 206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i-~iWd~~~~~~~~~~~~~~ 277 (327)
++ ++.+. .... ..+ . ..+.+++|+| ..+++++.++.. +||.+. ++ ..++..+.
T Consensus 287 l~-~~~g~----~~~~-~~~----~-----~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n 340 (347)
T 2gop_A 287 LY-IWDGE----IKPI-AKG----R-----HWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYN 340 (347)
T ss_dssp EE-EESSS----EEEE-ECS----S-----SEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTT
T ss_pred EE-EcCCc----eEEE-ecC----C-----CeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEecccc
Confidence 77 65211 1111 111 0 1477899999 677777776654 777665 43 34444443
No 190
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.43 E-value=8.4e-12 Score=118.97 Aligned_cols=236 Identities=11% Similarity=-0.006 Sum_probs=138.9
Q ss_pred EEEEe--cCCCcEEEEEE-CCCcEEEEECC--C-CeEEEEec-----CCCceeeEEEe-CCceEEEEecC----------
Q psy11885 20 AVKFA--PNSNQFLLASS-WDCNVSLYDIT--N-NNLRLKYA-----HSDPVLDCCFQ-DAVHSFSGGLD---------- 77 (327)
Q Consensus 20 ~i~fs--~~~~~~l~s~~-~d~~i~iwd~~--~-~~~~~~~~-----h~~~v~~~~~~-~~~~~~sgs~D---------- 77 (327)
..+|+ |+++.+|+.++ .+..|.+|++. + ++...... |...+..++|+ ++..+++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 56666 87644155444 35677777776 3 55444433 55667888995 78889888877
Q ss_pred CcEEEEEcCC------Cceeeee-cCCccEEEEEEeCCCCEEEEEECC--------CeEEEEeCC-CC---ceeeeeeC-
Q psy11885 78 CTLKMFDFNT------QTETVIG-THDQPIRAVEYSDEVNCILTGSWD--------TSVKMWDPR-SS---RCVGNYTQ- 137 (327)
Q Consensus 78 g~i~vwd~~~------~~~~~~~-~h~~~V~~l~~~~~~~~l~sgs~d--------~~i~lwdl~-~~---~~~~~~~~- 137 (327)
..|.+||+++ +....+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ +.......
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 5899999988 5555555 556678889999999999987755 379999998 56 33333222
Q ss_pred CCc--EEEEecCCCeEEEEeCCC--eEEEEECCCCccceeeeccccee-------eeEEeEEeeCCCceEEEeecCeEEE
Q psy11885 138 PDK--VFTMSLCGEKFVVGTAGR--KVCIWDLRNMGYIMQRRESSLKF-------QTRCIKCFPNKQGYVLSSIEGRAAV 206 (327)
Q Consensus 138 ~~~--~~~~~~~~~~~~~~~~d~--~v~iwD~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i 206 (327)
... ...++++|+.++++..++ .|.+||+.+.+.. ......... ....+++.+++..++.+.. +...+
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 223 345677788666777777 6777776554321 111110000 0234555666666666665 77777
Q ss_pred EEccCCcccccceeeeeeeeeccCCeeeEEEeeEE-EEecCCCeEEEecCCCe--EEEEeCCCcee
Q psy11885 207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAI-SFHQEYNTFATGGSDGY--VNIWDGFNKKR 269 (327)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v-~~spd~~~lasgs~dg~--i~iWd~~~~~~ 269 (327)
+.++..... . ..+..|. ..+..+ +++++.-.+++++.+.. |++||..+++.
T Consensus 319 ~~~d~~~~~--~-~~l~~~~---------~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 319 GILDPESGE--L-VDAAGPW---------TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEEETTTTE--E-EECCSSC---------CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEECCCCc--E-EEecCCC---------CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 766543211 1 1111111 123444 44444334455666654 55556666553
No 191
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.40 E-value=1.8e-10 Score=97.90 Aligned_cols=149 Identities=11% Similarity=0.119 Sum_probs=100.2
Q ss_pred CCeeEEEEecCCCcEEEEEEC-CCcEEEEECCCCeEEEEec--CCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCcee
Q psy11885 16 DGITAVKFAPNSNQFLLASSW-DCNVSLYDITNNNLRLKYA--HSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTET 91 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~--h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~ 91 (327)
..+..+++++.++.++++... ++.|++||. +++....+. +...+..+++. ++..+++...++.|.+||.+.....
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~ 155 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH 155 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE
Confidence 578899995324555555433 889999994 555433332 33457788884 5665566667889999997654333
Q ss_pred eee--cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC---Cc--EEEEecCCCeEEEEeCCC-eEEEE
Q psy11885 92 VIG--THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DK--VFTMSLCGEKFVVGTAGR-KVCIW 163 (327)
Q Consensus 92 ~~~--~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~d~-~v~iw 163 (327)
.+. .+...+..++++++++.+++...++.|++||.. ++.+..+... .. .++++++|..+++...++ .|++|
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF 234 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence 332 344568999999999877777789999999974 4555555332 22 345566676666666665 99999
Q ss_pred ECC
Q psy11885 164 DLR 166 (327)
Q Consensus 164 D~~ 166 (327)
|..
T Consensus 235 ~~~ 237 (286)
T 1q7f_A 235 TQD 237 (286)
T ss_dssp CTT
T ss_pred CCC
Confidence 853
No 192
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=5.1e-10 Score=95.98 Aligned_cols=241 Identities=15% Similarity=0.136 Sum_probs=153.4
Q ss_pred eEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeecC-
Q psy11885 19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTH- 96 (327)
Q Consensus 19 ~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h- 96 (327)
-+..|+|+++.++++...++.|..||..+++.. .+.....+.++++. ++. ++.+. +..|.+||.+++....+...
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECC
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecC
Confidence 478999976667777777899999999887753 33455678888885 555 55554 67899999987765433221
Q ss_pred ----CccEEEEEEeCCCCEEEEEEC-----------CCeEEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEE-EeCCC
Q psy11885 97 ----DQPIRAVEYSDEVNCILTGSW-----------DTSVKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVV-GTAGR 158 (327)
Q Consensus 97 ----~~~V~~l~~~~~~~~l~sgs~-----------d~~i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~d~ 158 (327)
...++.++++++|+..++... .+.|..+|.. ++....... ....++++++++.+++ .+.++
T Consensus 93 ~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~ 171 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSY 171 (297)
T ss_dssp TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGT
T ss_pred CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCC
Confidence 235788999999996665432 1344444443 332222221 1224566777776654 45678
Q ss_pred eEEEEECC--CCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885 159 KVCIWDLR--NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236 (327)
Q Consensus 159 ~v~iwD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 236 (327)
.|.+||+. ++. + .. .+ + +....... .
T Consensus 172 ~i~~~~~d~~~G~-~--------~~-~~---------------------~-~~~~~~~~--------------------~ 199 (297)
T 3g4e_A 172 SVDAFDYDLQTGQ-I--------SN-RR---------------------S-VYKLEKEE--------------------Q 199 (297)
T ss_dssp EEEEEEECTTTCC-E--------EE-EE---------------------E-EEECCGGG--------------------C
T ss_pred cEEEEeccCCCCc-c--------cC-cE---------------------E-EEECCCCC--------------------C
Confidence 89998863 211 0 00 00 0 00000000 0
Q ss_pred EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEEC-CCCCEEEEEEccc-cc---cCCCCCCCCC
Q psy11885 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS-YDGNVLAIACSYN-YE---LETPPDPIPP 311 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fs-pdg~~la~~~~~~-~~---~~~~~~~~~~ 311 (327)
.+..++++++|.+.++...++.|..||..+++.+..+..+...+++++|+ ||++.|.+++... +. +...| ..
T Consensus 200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~~~~~~~~~~p---~~ 276 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDGMDPEGLLRQP---EA 276 (297)
T ss_dssp EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTTCCHHHHHHCT---TT
T ss_pred CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcCCChhHccCCC---CC
Confidence 24568899999888888788899999998888888776665678999999 9998887776532 21 22222 46
Q ss_pred CcEEEEE
Q psy11885 312 NNIFIRH 318 (327)
Q Consensus 312 ~~~~~~~ 318 (327)
..+|.+.
T Consensus 277 G~~f~~~ 283 (297)
T 3g4e_A 277 GGIFKIT 283 (297)
T ss_dssp TCEEEEE
T ss_pred ceEEEec
Confidence 7888885
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.40 E-value=2.1e-10 Score=110.96 Aligned_cols=239 Identities=10% Similarity=-0.008 Sum_probs=142.9
Q ss_pred CCeeEEEEecCCCcEEEEEECC-C----cEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCc-----------
Q psy11885 16 DGITAVKFAPNSNQFLLASSWD-C----NVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCT----------- 79 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d-~----~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~----------- 79 (327)
..+..++|||++ ++||.++.+ | .|++||+.+++......+...+..++|++...++.++.|..
T Consensus 163 ~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCC
Confidence 367899999965 566655432 3 59999999988643322222235678863387887776654
Q ss_pred ---EEEEEcCCCce---eeeec--CCccEEEEEEeCCCCEEEEEECCC-----eEEEEeCCCC--ceeeeeeCC--CcEE
Q psy11885 80 ---LKMFDFNTQTE---TVIGT--HDQPIRAVEYSDEVNCILTGSWDT-----SVKMWDPRSS--RCVGNYTQP--DKVF 142 (327)
Q Consensus 80 ---i~vwd~~~~~~---~~~~~--h~~~V~~l~~~~~~~~l~sgs~d~-----~i~lwdl~~~--~~~~~~~~~--~~~~ 142 (327)
|++|++.++.. .+... +...+..+.|+|||++|+..+.++ .|.+||+.++ ++...+..+ ....
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 88999977652 22322 223588999999999988777544 8999999876 313333321 2233
Q ss_pred EEecCCCeEEEEeCC----CeEEEEECCCCc-cceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCccccc
Q psy11885 143 TMSLCGEKFVVGTAG----RKVCIWDLRNMG-YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK 217 (327)
Q Consensus 143 ~~~~~~~~~~~~~~d----~~v~iwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (327)
.+.++++.++..+.+ +.|.+||+.+.. ........ .......+.+. .+..++....++...++.++.....
T Consensus 322 ~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-- 397 (741)
T 1yr2_A 322 FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP-- 397 (741)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE--
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc--
Confidence 345778888887653 469999997642 11111111 11112233333 3333444555677777766632110
Q ss_pred ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEE----EecCCCeEEEEeCCCce
Q psy11885 218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFA----TGGSDGYVNIWDGFNKK 268 (327)
Q Consensus 218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~la----sgs~dg~i~iWd~~~~~ 268 (327)
...+..+ + ...+..++++|+++.|+ +....++|++||+.+++
T Consensus 398 -~~~l~~~---~-----~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 398 -AGAVSLP---G-----IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp -EEECBCS---S-----SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred -eeeccCC---C-----CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 0011100 0 11367789999998776 33345799999988765
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=1.4e-10 Score=111.41 Aligned_cols=226 Identities=8% Similarity=-0.061 Sum_probs=133.3
Q ss_pred CCCceeeEEEe-CCceEE-----EEecCCcEEEEEcCCCceeeeecCCccE--EEEEEeCCCCEEEEEECCCe-------
Q psy11885 56 HSDPVLDCCFQ-DAVHSF-----SGGLDCTLKMFDFNTQTETVIGTHDQPI--RAVEYSDEVNCILTGSWDTS------- 120 (327)
Q Consensus 56 h~~~v~~~~~~-~~~~~~-----sgs~Dg~i~vwd~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~sgs~d~~------- 120 (327)
|...+..++|+ ++.+++ +|+.+.+|++||+.++.... ..+...+ ..++|+|||+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 44457788886 777777 44455789999999876531 1121222 67899999999999998876
Q ss_pred ------EEEEeCCCCce----eeeeeCC-Cc--EEEEecCCCeEEEEeCCC----eEEEEECCCCccceeeecccceeee
Q psy11885 121 ------VKMWDPRSSRC----VGNYTQP-DK--VFTMSLCGEKFVVGTAGR----KVCIWDLRNMGYIMQRRESSLKFQT 183 (327)
Q Consensus 121 ------i~lwdl~~~~~----~~~~~~~-~~--~~~~~~~~~~~~~~~~d~----~v~iwD~~~~~~~~~~~~~~~~~~~ 183 (327)
|++|++.+++. +...... .. ...++++|+.++..+.++ .|.+||..+.+... ..... .. .
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~-~~-~ 274 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGV-GA-K 274 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECS-SC-C
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCC-Cc-e
Confidence 99999988762 2222221 22 345778888888776555 67777664433211 11110 00 1
Q ss_pred EEeEEeeCCCceEEEee-c-CeEEEEEccCCcccc-cceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEE
Q psy11885 184 RCIKCFPNKQGYVLSSI-E-GRAAVEYLDTGPEMQ-KMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVN 260 (327)
Q Consensus 184 ~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~ 260 (327)
.... .+++. +++.+. + ....++.++...... .....+. +. . ...+..++|+ ++.+++++..|+..+
T Consensus 275 ~~~~-~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~--~-----~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 275 YEVH-AWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-ED--S-----SASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp EEEE-EETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-CC--S-----SCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred EEEE-ecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec-CC--C-----CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 1112 24555 544433 1 234555555432211 0111111 10 0 0135677887 677888999999988
Q ss_pred EEeCC-CceeeeecCcC-CcceEEEEECCCCCEEEEEE
Q psy11885 261 IWDGF-NKKRLCQFHRY-DTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 261 iWd~~-~~~~~~~~~~~-~~~v~~l~fspdg~~la~~~ 296 (327)
||.+. +++.+..+..+ ...+..++++||++.|+...
T Consensus 344 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp EEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred EEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence 88654 35555555444 44578899999998887554
No 195
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=9e-09 Score=89.44 Aligned_cols=245 Identities=10% Similarity=-0.014 Sum_probs=150.3
Q ss_pred eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeecC
Q psy11885 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGTH 96 (327)
Q Consensus 18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h 96 (327)
....+|+|+++.++++...++.|..||..+++... +.....+.++++. ++..++ ++.+ .|.+||.+++....+...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HALPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEECS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EECCCcceEEEEeCCCeEEE-EECC-CEEEEECCCCcEEEEeeC
Confidence 35789999766677777778999999998887543 2345678888885 555544 4444 499999877765433221
Q ss_pred -----CccEEEEEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEEE-eCCCeEEE
Q psy11885 97 -----DQPIRAVEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVVG-TAGRKVCI 162 (327)
Q Consensus 97 -----~~~V~~l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~d~~v~i 162 (327)
...+..++++++|+.+++... .+.|..+| +++....... ....++++++++.++.+ +.++.|.+
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~ 205 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR 205 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence 235889999999987665442 24565566 4443222111 11234566677766554 45678888
Q ss_pred EECC--CC-ccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEee
Q psy11885 163 WDLR--NM-GYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN 239 (327)
Q Consensus 163 wD~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~ 239 (327)
||+. ++ ... . ... .. .+.... ..+.
T Consensus 206 ~d~~~~~Gl~~~------~----~~~-----------~~---------~~~~~~----------------------~~p~ 233 (326)
T 2ghs_A 206 VPLDARTGLPTG------K----AEV-----------FI---------DSTGIK----------------------GGMD 233 (326)
T ss_dssp EEBCTTTCCBSS------C----CEE-----------EE---------ECTTSS----------------------SEEE
T ss_pred EEcccccCCccc------C----ceE-----------EE---------ECCCCC----------------------CCCC
Confidence 8864 22 100 0 000 00 000000 0135
Q ss_pred EEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEEC-CCCCEEEEEEccccc----cCCCCCCCCCCcE
Q psy11885 240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFS-YDGNVLAIACSYNYE----LETPPDPIPPNNI 314 (327)
Q Consensus 240 ~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fs-pdg~~la~~~~~~~~----~~~~~~~~~~~~~ 314 (327)
.++++++|.++++...++.|.+||. +++.+..+..+...+++++|+ ||++.|.+++..... +...| ....+
T Consensus 234 gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~~~~~~~~~~p---~~g~~ 309 (326)
T 2ghs_A 234 GSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANP---QHGLT 309 (326)
T ss_dssp EEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCT---TTTCE
T ss_pred eeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCCCChhHhccCC---CCceE
Confidence 6888999988887767789999997 566666665555568999998 998888766554321 11111 35678
Q ss_pred EEEEccccc
Q psy11885 315 FIRHVTDQE 323 (327)
Q Consensus 315 ~~~~~~~~~ 323 (327)
|.+.+.-+|
T Consensus 310 ~~~~~~~~G 318 (326)
T 2ghs_A 310 FELGIEVKG 318 (326)
T ss_dssp EECSSCCCC
T ss_pred EEEeCCCCC
Confidence 877655444
No 196
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.34 E-value=1e-10 Score=101.93 Aligned_cols=196 Identities=9% Similarity=0.019 Sum_probs=123.8
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-EEEEe----------cCCCceeeEEEe--CCceEEEEe-cCCcEE
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKY----------AHSDPVLDCCFQ--DAVHSFSGG-LDCTLK 81 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~----------~h~~~v~~~~~~--~~~~~~sgs-~Dg~i~ 81 (327)
.....|+|+|++ .++++...++.|++||..... ..... .+-.....+++. ++..+++.+ .++.|+
T Consensus 91 ~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 91 YLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp SSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred CCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 578899999964 577777788999999987652 22222 122356788885 355555655 589999
Q ss_pred EEEcCCCceeeeec----------CCccEEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCC---CcEEEEecC
Q psy11885 82 MFDFNTQTETVIGT----------HDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQP---DKVFTMSLC 147 (327)
Q Consensus 82 vwd~~~~~~~~~~~----------h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~---~~~~~~~~~ 147 (327)
+|+.+......+.. +-.....++++++ ++.+++...+++|++||..+++.+..+..+ .....+.+.
T Consensus 170 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 249 (329)
T 3fvz_A 170 QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYI 249 (329)
T ss_dssp EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEE
T ss_pred EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeec
Confidence 99955433333321 1133789999998 666677778899999999888887776432 223333222
Q ss_pred CCeEE--------EEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce
Q psy11885 148 GEKFV--------VGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK 219 (327)
Q Consensus 148 ~~~~~--------~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 219 (327)
+..++ +...+..|++||..+++.+.. +.....
T Consensus 250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~-----------------------------------~~~~~~----- 289 (329)
T 3fvz_A 250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV-----------------------------------FKPVRK----- 289 (329)
T ss_dssp TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE-----------------------------------ECCSSS-----
T ss_pred CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE-----------------------------------EcCCCC-----
Confidence 22222 222344677787765431100 000000
Q ss_pred eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC
Q psy11885 220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266 (327)
Q Consensus 220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~ 266 (327)
+...+..++++|+|..+++...++.|++|+...
T Consensus 290 --------------~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 290 --------------HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp --------------CCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred --------------ccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 001256799999998889999999999999653
No 197
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.31 E-value=1e-09 Score=98.31 Aligned_cols=252 Identities=10% Similarity=0.023 Sum_probs=150.0
Q ss_pred CcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEe----------cCCcEEEEEcCCCcee-eee-c------CCc
Q psy11885 38 CNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGG----------LDCTLKMFDFNTQTET-VIG-T------HDQ 98 (327)
Q Consensus 38 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs----------~Dg~i~vwd~~~~~~~-~~~-~------h~~ 98 (327)
+.|.+.|..+++......-.... .++++ ++.+++.+. .++.|.++|..+.+.. .+. . ...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~ 177 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT 177 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence 79999999999965544322223 78885 788887665 3678999999887643 221 1 012
Q ss_pred cEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeeeeCCCcEEEEecC-CCeEEEEeCCCeEEEEECCCCccceeee
Q psy11885 99 PIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNYTQPDKVFTMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRR 175 (327)
Q Consensus 99 ~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~ 175 (327)
....+.++|||++++.+.. ++.|.+.|+.+++.+.++..+.. ..+.+. ...+++.+.||++.+.|+.+.+.. ...
T Consensus 178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~-~~~ 255 (426)
T 3c75_H 178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGETK-VTN 255 (426)
T ss_dssp CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTCCE-EEE
T ss_pred CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEE-EEe
Confidence 2356889999999999875 58999999999999888876553 223333 345666778888888887443321 100
Q ss_pred ccccee----eeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCee-eEEE--eeEEEEecCCC
Q psy11885 176 ESSLKF----QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE-KIYP--VNAISFHQEYN 248 (327)
Q Consensus 176 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~-~~~~--v~~v~~spd~~ 248 (327)
...... ......+.+++..++..+..+.+.+........ .+...+.. ....... ...+ ...++++|+++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~--~v~~~~~~--~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA--TFRAPIEA--LTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE--EECCCEES--SCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce--EEeeeeee--ccccccccccccCCceeeEEcCCCC
Confidence 000000 001122344555555555555444433221110 00000000 0000000 0001 22378999988
Q ss_pred eEEEecC----------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCC-EEEEEEc
Q psy11885 249 TFATGGS----------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGN-VLAIACS 297 (327)
Q Consensus 249 ~lasgs~----------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~-~la~~~~ 297 (327)
.+.+.-. +++|.+.|..+.+.+..+.... ..+.++|+|||+ +|+++..
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~ 390 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSA 390 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEET
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcC
Confidence 7766532 4579999999999988875432 468999999999 7877763
No 198
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.31 E-value=5e-09 Score=90.90 Aligned_cols=233 Identities=11% Similarity=0.004 Sum_probs=136.4
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEecC----CcEEEEEcCCC
Q psy11885 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLD----CTLKMFDFNTQ 88 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~D----g~i~vwd~~~~ 88 (327)
...+.+++|+|+ +.+++++..++.|.+||..+++..... .+...+.++++. ++..++++..+ +.|.+||.+++
T Consensus 44 ~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 44 GLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp CCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 346789999995 467777778899999999988765443 466778899995 55555555555 58999998876
Q ss_pred cee-eee--cCCccEEEEEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeC--CCcEEEEecCCCeEEEE-eC
Q psy11885 89 TET-VIG--THDQPIRAVEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQ--PDKVFTMSLCGEKFVVG-TA 156 (327)
Q Consensus 89 ~~~-~~~--~h~~~V~~l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~ 156 (327)
... .+. .+...+..++++++|+.+++... .+.|..+|..+++....... ....+.++++++.++++ +.
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred EEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCC
Confidence 654 222 23457899999999987776654 35677777765544322221 12234566777766544 56
Q ss_pred CCeEEEEECCCC-ccceee---ecccce--eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC
Q psy11885 157 GRKVCIWDLRNM-GYIMQR---RESSLK--FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED 230 (327)
Q Consensus 157 d~~v~iwD~~~~-~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~ 230 (327)
++.|.+||+++. +..... ...... ..+..+.+.+++..++....++.+.+ ++.... ....+..+..
T Consensus 203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~--~d~~g~---~~~~~~~~~~--- 274 (333)
T 2dg1_A 203 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV--FNKRGY---PIGQILIPGR--- 274 (333)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEE--ECTTSC---EEEEEECTTG---
T ss_pred CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEE--ECCCCC---EEEEEEcCCC---
Confidence 789999998642 211100 000000 12345666666554443333444444 443211 1111111000
Q ss_pred CeeeEEEeeEEEEecCCCeEEEecCC
Q psy11885 231 GIEKIYPVNAISFHQEYNTFATGGSD 256 (327)
Q Consensus 231 ~~~~~~~v~~v~~spd~~~lasgs~d 256 (327)
..++...+.+++|+||++.|..++.+
T Consensus 275 ~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 275 DEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ccccccCcceEEECCCCCEEEEEeCc
Confidence 00001135789999998777655544
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.29 E-value=2.6e-08 Score=84.65 Aligned_cols=262 Identities=8% Similarity=-0.008 Sum_probs=155.3
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCce
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~ 90 (327)
....+.+++++++ +.+.++...++.|.+||.. ++..... .....+..+++. ++...++...++.|..+|.+ +..
T Consensus 18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 3468899999996 4566655568999999988 6643322 123457777775 45555555557889999987 443
Q ss_pred eee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee-eeC-CCcE--EEEecCCCeEEEEeCCCeEEEEE
Q psy11885 91 TVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN-YTQ-PDKV--FTMSLCGEKFVVGTAGRKVCIWD 164 (327)
Q Consensus 91 ~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~-~~~-~~~~--~~~~~~~~~~~~~~~d~~v~iwD 164 (327)
..+ ......+..+++.++++..++...++.|..+|.. ++.... +.. .... +.+...++.+++...++.|..+|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 322 2234568899999999887777768899999987 554321 221 1223 34455566455555578899999
Q ss_pred CCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885 165 LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH 244 (327)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 244 (327)
. +.+.......... ..+..+.+.+++..+++....+.+. .++..... ...... . . ...+.+++++
T Consensus 174 ~-~g~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~i~--~~~~~g~~--~~~~~~-----~-~---~~~~~~i~~d 238 (300)
T 2qc5_A 174 N-TGKLEEYPLPTNA-AAPVGITSGNDGALWFVEIMGNKIG--RITTTGEI--SEYDIP-----T-P---NARPHAITAG 238 (300)
T ss_dssp T-TCCEEEEECSSTT-CCEEEEEECTTSSEEEEETTTTEEE--EECTTCCE--EEEECS-----S-T---TCCEEEEEEC
T ss_pred C-CCcEEEeeCCCCC-CCcceEEECCCCCEEEEccCCCEEE--EEcCCCcE--EEEECC-----C-C---CCCceEEEEC
Confidence 8 3332211111111 1235555555554333332233333 34431111 011000 0 0 0135789999
Q ss_pred cCCCeEEEecCCCeEEEEeCCCceeee-ecCcCCcceEEEEECCCCCEEEEE
Q psy11885 245 QEYNTFATGGSDGYVNIWDGFNKKRLC-QFHRYDTGITSLCFSYDGNVLAIA 295 (327)
Q Consensus 245 pd~~~lasgs~dg~i~iWd~~~~~~~~-~~~~~~~~v~~l~fspdg~~la~~ 295 (327)
++++.+++...++.|..||. +++... .+......+.+++++|+|+++++.
T Consensus 239 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 239 KNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp STTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred CCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence 99998887777899999997 444322 222233457899999999876644
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=9.2e-09 Score=92.29 Aligned_cols=233 Identities=12% Similarity=0.074 Sum_probs=143.4
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCC--cEEEEEcCCCce-e
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDC--TLKMFDFNTQTE-T 91 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg--~i~vwd~~~~~~-~ 91 (327)
.....|+|+++ +.++++...++.|++||..++++........... ++|. ++..++.+..++ .|.+|+...+.. .
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46789999995 4666766667899999999888665544333333 7774 677788888766 688888765543 2
Q ss_pred ee---ec-CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee----eeC---CC-c-EEEEecCCCeE-EEEeCC
Q psy11885 92 VI---GT-HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN----YTQ---PD-K-VFTMSLCGEKF-VVGTAG 157 (327)
Q Consensus 92 ~~---~~-h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~----~~~---~~-~-~~~~~~~~~~~-~~~~~d 157 (327)
.+ .. ....+.+++++|++..|+.+..+++|+.||+.++..... ... .. . -+++++.+..+ ++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 22 12 345578899999655666677789999999987653221 111 11 1 56667644444 444566
Q ss_pred CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885 158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP 237 (327)
Q Consensus 158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 237 (327)
+.|+.||..... .. +.+...... +..+... .. ....
T Consensus 289 ~~I~~~~~~g~~--------------~~----------~~g~~~~~g----~~dg~~~---~~-------------~~~~ 324 (409)
T 3hrp_A 289 SSVYKITPDGEC--------------EW----------FCGSATQKT----VQDGLRE---EA-------------LFAQ 324 (409)
T ss_dssp TEEEEECTTCCE--------------EE----------EEECTTCCS----CBCEEGG---GC-------------BCSS
T ss_pred CEEEEEecCCCE--------------EE----------EEeCCCCCC----cCCCccc---cc-------------EeCC
Confidence 788888765310 00 000000000 0000000 00 0012
Q ss_pred eeEEEEecCCCeEEEec-CCCeEEEEeCCCceeeeecCcC---------------CcceEEEEECCCCCEEEEE
Q psy11885 238 VNAISFHQEYNTFATGG-SDGYVNIWDGFNKKRLCQFHRY---------------DTGITSLCFSYDGNVLAIA 295 (327)
Q Consensus 238 v~~v~~spd~~~lasgs-~dg~i~iWd~~~~~~~~~~~~~---------------~~~v~~l~fspdg~~la~~ 295 (327)
...++++|+|.++++-+ .++.|+.|+..+++.. .+.++ -.....|+++|+|.++++-
T Consensus 325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad 397 (409)
T 3hrp_A 325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE 397 (409)
T ss_dssp EEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred CeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence 56799999999888888 8899999997777643 22221 1236899999998776654
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.26 E-value=1.8e-08 Score=88.85 Aligned_cols=252 Identities=12% Similarity=0.039 Sum_probs=147.1
Q ss_pred EEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEec--C------CCceeeEEEe-CCceEEEEec--CC
Q psy11885 20 AVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYA--H------SDPVLDCCFQ-DAVHSFSGGL--DC 78 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~--h------~~~v~~~~~~-~~~~~~sgs~--Dg 78 (327)
.++++|++ ++|+++. .++.|.+||..+.+...... . ......++|+ ++.+++.+.. ++
T Consensus 82 ~va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred cEEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 49999976 4444443 36789999999988644332 1 1134567884 8888887764 68
Q ss_pred cEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC-Cceeeeee---CC--CcE---EEEecCC
Q psy11885 79 TLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS-SRCVGNYT---QP--DKV---FTMSLCG 148 (327)
Q Consensus 79 ~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~-~~~~~~~~---~~--~~~---~~~~~~~ 148 (327)
.|.++|+.+++.. .+.. .+. ...+....+.+++.+.||++-..++.+ ++...... .. ..+ ..+....
T Consensus 161 ~VsVID~~t~~vv~tI~v-~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d 237 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDV-PDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 237 (386)
T ss_dssp EEEEEETTTTEEEEEEEC-CSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred eEEEEECCCCcEEEEEEC-CCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC
Confidence 9999999987653 2321 111 223333446777888899988888876 55422111 11 111 1232223
Q ss_pred CeEEEEeCCCeEEEEECCCCcc-ceeeec--------ccc-eeeeEEeEEeeCCCceEEEeec--------CeEEEEEcc
Q psy11885 149 EKFVVGTAGRKVCIWDLRNMGY-IMQRRE--------SSL-KFQTRCIKCFPNKQGYVLSSIE--------GRAAVEYLD 210 (327)
Q Consensus 149 ~~~~~~~~d~~v~iwD~~~~~~-~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~ 210 (327)
..++..+.++.|.+.|+.+... +..... ... +.....+.++++.+.+.+.... ....|+.+|
T Consensus 238 G~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 238 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 3555577789999999975432 111000 000 1011224455665555554321 124555565
Q ss_pred CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC-eEEE-ecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCC
Q psy11885 211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFAT-GGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 288 (327)
Q Consensus 211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~-~las-gs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspd 288 (327)
..... +...+. .-..++.++++||++ +|.+ ...+++|.++|..+++.+.++.....+ +.|.+++|
T Consensus 318 ~~t~k--v~~~i~----------vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p-~~l~~s~d 384 (386)
T 3sjl_D 318 AKTGE--RLAKFE----------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG-PQVITTAD 384 (386)
T ss_dssp TTTCC--EEEEEE----------EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS-CCEEEECC
T ss_pred CCCCe--EEEEEE----------CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC-ceeEECCc
Confidence 43321 111111 012577899999997 5555 556899999999999998887643322 56788887
No 202
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=8e-09 Score=98.64 Aligned_cols=282 Identities=12% Similarity=0.129 Sum_probs=164.5
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCC------CceeeEEEeCCceEEEEec------CCcEEEEEcCCCceee-eec
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHS------DPVLDCCFQDAVHSFSGGL------DCTLKMFDFNTQTETV-IGT 95 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~------~~v~~~~~~~~~~~~sgs~------Dg~i~vwd~~~~~~~~-~~~ 95 (327)
..+++++.|+.+..+|..+|++.-..... ..+.+.-...+..++.++. ++.|+.+|..+++... +..
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 46777888999999999999865443321 1222211122445555543 7899999999887542 111
Q ss_pred C--C------------------------------ccEEEEEEeCCCCEEEEEECCC-------------------eEEEE
Q psy11885 96 H--D------------------------------QPIRAVEYSDEVNCILTGSWDT-------------------SVKMW 124 (327)
Q Consensus 96 h--~------------------------------~~V~~l~~~~~~~~l~sgs~d~-------------------~i~lw 124 (327)
. . .....+.++++++.++.++.++ .|..+
T Consensus 209 ~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~Al 288 (677)
T 1kb0_A 209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL 288 (677)
T ss_dssp SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred CCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEE
Confidence 1 0 0113567889999999887664 59999
Q ss_pred eCCCCceeeeeeCCC-----------c-EEEEecCC---CeEEEEeCCCeEEEEECCCCccceeeecccceee-------
Q psy11885 125 DPRSSRCVGNYTQPD-----------K-VFTMSLCG---EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQ------- 182 (327)
Q Consensus 125 dl~~~~~~~~~~~~~-----------~-~~~~~~~~---~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~------- 182 (327)
|.++++.++.++... . ......+| ..+++++.+|.+.++|.++++.+...........
T Consensus 289 D~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g 368 (677)
T 1kb0_A 289 DPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHG 368 (677)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTS
T ss_pred ECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCC
Confidence 999999888765311 1 12233355 5688889999999999998876533221110000
Q ss_pred --------------------------eEEeEEeeCCCceEEEeecC----------------------------------
Q psy11885 183 --------------------------TRCIKCFPNKQGYVLSSIEG---------------------------------- 202 (327)
Q Consensus 183 --------------------------~~~~~~~~~~~~~~~~~~~~---------------------------------- 202 (327)
...+++.|....+.+...+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 448 (677)
T 1kb0_A 369 KPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNA 448 (677)
T ss_dssp CEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECS
T ss_pred ceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccccc
Confidence 01234444444444433210
Q ss_pred -------eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc
Q psy11885 203 -------RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR 275 (327)
Q Consensus 203 -------~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~ 275 (327)
...+.-+|.... ++.+.+.. . .++....+.+++..++.|+.||.+++||..+++.+.++..
T Consensus 449 ~~~~~~~~g~l~A~D~~tG--~~~W~~~~-~---------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 449 EPPKSKPFGRLLAWDPVAQ--KAAWSVEH-V---------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp SCCCSCCEEEEEEEETTTT--EEEEEEEE-S---------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCccEEEEEeCCCC--cEEeecCC-C---------CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 012222222111 11111110 0 0233445667888899999999999999999999988764
Q ss_pred CCc-ceEEEEECCCCC-EEEEEEccccccC---CCCCCCCCCcEEEEEcccc
Q psy11885 276 YDT-GITSLCFSYDGN-VLAIACSYNYELE---TPPDPIPPNNIFIRHVTDQ 322 (327)
Q Consensus 276 ~~~-~v~~l~fspdg~-~la~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 322 (327)
... ...-+.|+++|+ ++++.++++..+. .+......+.++++.|...
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~ 568 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGK 568 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCB
T ss_pred CCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecccc
Confidence 332 224467888987 5555555444322 2222234678888877643
No 203
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=7.3e-09 Score=90.66 Aligned_cols=258 Identities=10% Similarity=0.035 Sum_probs=151.7
Q ss_pred CCeeEEEEecCCCcEEEEEE--CCCcEEEEECCCCeEEEEe-------cCCCceeeEEEeCCceEEEEe-c-----CCcE
Q psy11885 16 DGITAVKFAPNSNQFLLASS--WDCNVSLYDITNNNLRLKY-------AHSDPVLDCCFQDAVHSFSGG-L-----DCTL 80 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~sgs-~-----Dg~i 80 (327)
..+..++++|+ ++++++.. .++.++||.+.++++.... .+-..+..+++.....++... . ++.|
T Consensus 17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCC-CCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 57889999996 46777653 2343666666566544221 123467788886434455433 2 5789
Q ss_pred EEEEcCCCce-eeeec------CCccEEEEEEeCCCCEE-EEEE---CCCeEEEEeCCCCceeeeeeCCCc----EEEEe
Q psy11885 81 KMFDFNTQTE-TVIGT------HDQPIRAVEYSDEVNCI-LTGS---WDTSVKMWDPRSSRCVGNYTQPDK----VFTMS 145 (327)
Q Consensus 81 ~vwd~~~~~~-~~~~~------h~~~V~~l~~~~~~~~l-~sgs---~d~~i~lwdl~~~~~~~~~~~~~~----~~~~~ 145 (327)
.+||+.+++. ..+.. +......+++++++..+ ++.. .++.|.+||+.+++....+..+.. ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999987763 22221 22356889999765555 4444 578999999988876554432100 02233
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcc------cccce
Q psy11885 146 LCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE------MQKMK 219 (327)
Q Consensus 146 ~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~ 219 (327)
..+..+.+...++.++.|.. ....+++.++++.+..+...+. .++.++.... .....
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~----------------~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~ 238 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHL----------------GVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELG 238 (343)
T ss_dssp ETTEECBEECTTSCEECCCC----------------CEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHH
T ss_pred ECCEEEEeccCCCceeceec----------------ccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhh
Confidence 34555666666777766642 1245677777765665554443 3333331100 00000
Q ss_pred eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-CCcceEEEEECCCCCEEEEEEcc
Q psy11885 220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-YDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-~~~~v~~l~fspdg~~la~~~~~ 298 (327)
..+... ++......++++++|.++++...++.|.+||..+++....... ......+++|+|+|+++++.+..
T Consensus 239 ~~~~~~-------g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 239 SKIERY-------SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp TTCEEE-------EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred cceEec-------ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 000000 0001246799999999999999999999999855653322221 12347899999999988887654
No 204
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.24 E-value=7.4e-09 Score=96.59 Aligned_cols=192 Identities=10% Similarity=0.033 Sum_probs=120.0
Q ss_pred eEEEEecCCcEEEEEcCCCcee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCC--CCceeeeeeCCCc--EEEE
Q psy11885 70 HSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR--SSRCVGNYTQPDK--VFTM 144 (327)
Q Consensus 70 ~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~--~~~~~~~~~~~~~--~~~~ 144 (327)
.+++...+++|.++|..+++.. .+. ....+..+.++|||+++++++.|+.|.+||+. +++.+.++..... .+.+
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~ 247 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 247 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence 4457777899999999987654 333 23356789999999999999999999999996 7777777765332 3566
Q ss_pred e----cCCCeEEEEe-CCCeEEEEECCCCccceeeecccc--------ee-eeEEeEEeeCCCceEEEeecCeEEEEEcc
Q psy11885 145 S----LCGEKFVVGT-AGRKVCIWDLRNMGYIMQRRESSL--------KF-QTRCIKCFPNKQGYVLSSIEGRAAVEYLD 210 (327)
Q Consensus 145 ~----~~~~~~~~~~-~d~~v~iwD~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 210 (327)
+ ++|+.++++. .+++|.++|..+.+.+........ +. ....+..++....+++.. .....++.++
T Consensus 248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-~~~g~v~~vd 326 (567)
T 1qks_A 248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-KETGKILLVD 326 (567)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-TTTTEEEEEE
T ss_pred ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-cCCCeEEEEe
Confidence 7 5788776654 568999999988765433221110 00 112333344434433333 2223333344
Q ss_pred CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeCCCceeeeec
Q psy11885 211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDGFNKKRLCQF 273 (327)
Q Consensus 211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~~~~~~~~~~ 273 (327)
...........+. .. .....+.|+|++++|+++. .++.|.++|..+++.+..+
T Consensus 327 ~~~~~~~~v~~i~-----~~-----~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 327 YTDLNNLKTTEIS-----AE-----RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp TTCSSEEEEEEEE-----CC-----SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred cCCCccceeeeee-----cc-----ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 3221100000000 00 0134678999999987665 5689999999998876554
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.22 E-value=4.1e-09 Score=101.92 Aligned_cols=223 Identities=11% Similarity=0.010 Sum_probs=129.1
Q ss_pred ceeeEEEe-CCceEEEEecC-----CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCe------------
Q psy11885 59 PVLDCCFQ-DAVHSFSGGLD-----CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTS------------ 120 (327)
Q Consensus 59 ~v~~~~~~-~~~~~~sgs~D-----g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~------------ 120 (327)
.+...+|+ ++.+++.++.+ .+|++||++++.......+...+..++|+|| +.|+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 56777886 77877765543 3599999998875433222222357899999 99998887654
Q ss_pred --EEEEeCCCCcee--eeeeCCC-----cEEEEecCCCeEEEEeCC-----CeEEEEECCCC--ccceeeecccceeeeE
Q psy11885 121 --VKMWDPRSSRCV--GNYTQPD-----KVFTMSLCGEKFVVGTAG-----RKVCIWDLRNM--GYIMQRRESSLKFQTR 184 (327)
Q Consensus 121 --i~lwdl~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~d-----~~v~iwD~~~~--~~~~~~~~~~~~~~~~ 184 (327)
|++|++.++... ..+..+. ....++++|+.++..+.+ ..|.+||+.+. +....... ..... .
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~-~ 320 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-DLKAQ-W 320 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-SSSSC-E
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-CCCce-E
Confidence 899999876521 1222211 234567788888776644 38999998765 20111111 11111 1
Q ss_pred EeEEeeCCCceEEEeecC--eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEE
Q psy11885 185 CIKCFPNKQGYVLSSIEG--RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW 262 (327)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iW 262 (327)
. .+.++++.++..+..+ ...++.++...........+..+. ..+..++++ ++.++++...|+..+||
T Consensus 321 ~-~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---------~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 321 D-FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---------DNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp E-EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---------SEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---------CeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 1 1236666666555432 234444543321001111111110 124566776 56678888899988777
Q ss_pred eCC-CceeeeecCcC-CcceEEEEECCCCCEEEEE
Q psy11885 263 DGF-NKKRLCQFHRY-DTGITSLCFSYDGNVLAIA 295 (327)
Q Consensus 263 d~~-~~~~~~~~~~~-~~~v~~l~fspdg~~la~~ 295 (327)
... +++.+..+..+ ...+..++++||++.|+..
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 543 45555555432 4568899999999877654
No 206
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.22 E-value=1.1e-08 Score=97.92 Aligned_cols=282 Identities=11% Similarity=0.090 Sum_probs=162.1
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCC------Cceee-EEEeCCceEEEEe------cCCcEEEEEcCCCceee-ee
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHS------DPVLD-CCFQDAVHSFSGG------LDCTLKMFDFNTQTETV-IG 94 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~------~~v~~-~~~~~~~~~~sgs------~Dg~i~vwd~~~~~~~~-~~ 94 (327)
..+++++.|+.|.-+|..+|++.-.+... ..+.+ ....+ ..++.++ .++.|..||..+++... +.
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 36778889999999999999865433221 11211 11223 3445443 37899999999887642 11
Q ss_pred c--CC-----------------------------ccEEEEEEeCCCCEEEEEECCCe-------------------EEEE
Q psy11885 95 T--HD-----------------------------QPIRAVEYSDEVNCILTGSWDTS-------------------VKMW 124 (327)
Q Consensus 95 ~--h~-----------------------------~~V~~l~~~~~~~~l~sgs~d~~-------------------i~lw 124 (327)
. +. ..-..+.++++.+.++.++.++. |..|
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1 00 01125788898899999887764 9999
Q ss_pred eCCCCceeeeeeCC----------CcE--EEEecCCC---eEEEEeCCCeEEEEECCCCccceeeecccce--ee-----
Q psy11885 125 DPRSSRCVGNYTQP----------DKV--FTMSLCGE---KFVVGTAGRKVCIWDLRNMGYIMQRRESSLK--FQ----- 182 (327)
Q Consensus 125 dl~~~~~~~~~~~~----------~~~--~~~~~~~~---~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~--~~----- 182 (327)
|.++++.++.++.. ... ..+...|. .++.++.+|.+.++|.++++.+......... ..
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 99999998876531 111 12233454 5778889999999999988765222111100 00
Q ss_pred ------------------------------eEEeEEeeCCCceEEEeecCe-----------------------------
Q psy11885 183 ------------------------------TRCIKCFPNKQGYVLSSIEGR----------------------------- 203 (327)
Q Consensus 183 ------------------------------~~~~~~~~~~~~~~~~~~~~~----------------------------- 203 (327)
...+++.|....+.+...+..
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 001334444443333322111
Q ss_pred --------------EEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885 204 --------------AAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKR 269 (327)
Q Consensus 204 --------------~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~ 269 (327)
..+.-+|.... ++.+.+..+ .+...-.+...+..++.|+.||.++.||..+|+.
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG--~~~W~~~~~----------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQ--QAAWEVPYV----------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTT--EEEEEEEES----------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccCCCCCCCcceeEEEEECCCC--CeEeEccCC----------CCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 11222222111 111111110 0122335566788899999999999999999999
Q ss_pred eeecCcCCcc-eEEEEECCCCC-EEEEEEccccccCCC-------CCCCCCCcEEEEEccccc
Q psy11885 270 LCQFHRYDTG-ITSLCFSYDGN-VLAIACSYNYELETP-------PDPIPPNNIFIRHVTDQE 323 (327)
Q Consensus 270 ~~~~~~~~~~-v~~l~fspdg~-~la~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 323 (327)
+.++...... ..-+.|+.||+ |+++.++++..+..+ .....-+.+++|.+-..+
T Consensus 509 lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~~ 571 (689)
T 1yiq_A 509 LWEQPAASGVMAAPVTYSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTA 571 (689)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCCC
T ss_pred ceeeeCCCCcccCceEEEECCEEEEEEEecCCccccccccccccccccCCCceEEEeecCCcc
Confidence 9887543322 24478889988 555555544433211 122356678888765443
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=1.3e-08 Score=97.53 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=132.3
Q ss_pred CCCCeeEEEEecCCCcEEE-EEEC----CCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCc---------
Q psy11885 14 PEDGITAVKFAPNSNQFLL-ASSW----DCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCT--------- 79 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~-s~~~----d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~--------- 79 (327)
+...+..++|||++ ++|| +.+. +.+|++||+.+++......+......++|+++..++.++.+..
T Consensus 127 ~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccC
Confidence 44568889999975 5555 3332 2579999999998543211111124567887788887777743
Q ss_pred ----EEEEEcCCCce--eee-ec---CCccEEEEEEeCCCCEEEEE-E---CCCeEEEEeCCCCc-eeeeeeCC-C-cEE
Q psy11885 80 ----LKMFDFNTQTE--TVI-GT---HDQPIRAVEYSDEVNCILTG-S---WDTSVKMWDPRSSR-CVGNYTQP-D-KVF 142 (327)
Q Consensus 80 ----i~vwd~~~~~~--~~~-~~---h~~~V~~l~~~~~~~~l~sg-s---~d~~i~lwdl~~~~-~~~~~~~~-~-~~~ 142 (327)
|++|++.+... ..+ .. |...+..+.++|||++|+.. + .++.|.++|+.+++ ....+..+ . ...
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 99999987643 222 22 33456789999999987543 3 23589999997763 23333322 1 222
Q ss_pred EEecCCCeEEEEeCC----CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccc
Q psy11885 143 TMSLCGEKFVVGTAG----RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM 218 (327)
Q Consensus 143 ~~~~~~~~~~~~~~d----~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 218 (327)
.+...++.++..+.. ..|..+|+.+.+.. ...
T Consensus 286 ~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~------~~~-------------------------------------- 321 (693)
T 3iuj_A 286 LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA------HWR-------------------------------------- 321 (693)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------GCE--------------------------------------
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------ccE--------------------------------------
Confidence 355666666555432 45667776543210 000
Q ss_pred eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC-CC--eEEEEeCCCceeeeecC-cCCcceEEEEECCCCCEEEE
Q psy11885 219 KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DG--YVNIWDGFNKKRLCQFH-RYDTGITSLCFSYDGNVLAI 294 (327)
Q Consensus 219 ~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~-dg--~i~iWd~~~~~~~~~~~-~~~~~v~~l~fspdg~~la~ 294 (327)
.+..|.. .+. .|+|+++.|+.... ++ .|++|++..+ ....+. .....+..++++||++.|+.
T Consensus 322 --~l~~~~~---------~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~ 387 (693)
T 3iuj_A 322 --DLIPERQ---------QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYF 387 (693)
T ss_dssp --EEECCCS---------SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEE
T ss_pred --EEecCCC---------CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEE
Confidence 0000000 011 67788887776554 44 6888987644 334433 23345777888999888776
Q ss_pred EE
Q psy11885 295 AC 296 (327)
Q Consensus 295 ~~ 296 (327)
..
T Consensus 388 ~~ 389 (693)
T 3iuj_A 388 GF 389 (693)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.21 E-value=4.2e-09 Score=90.57 Aligned_cols=223 Identities=8% Similarity=-0.026 Sum_probs=138.4
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeeeec
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVIGT 95 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~ 95 (327)
-....+|+|+++.+++++..++.|..|+. +++......+...+..+++. ++..+++...++.|.+|+.+ +....+..
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~ 123 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG 123 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence 45678999976557777777899999998 45544444455667888885 55544444445789999986 43332221
Q ss_pred C-----CccEEEEEEeCCCCEEEE----EEC-------------CCeEEEEeCCCCceeeeeeC-CCcEEEEecCCCeEE
Q psy11885 96 H-----DQPIRAVEYSDEVNCILT----GSW-------------DTSVKMWDPRSSRCVGNYTQ-PDKVFTMSLCGEKFV 152 (327)
Q Consensus 96 h-----~~~V~~l~~~~~~~~l~s----gs~-------------d~~i~lwdl~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (327)
+ ...+..++++++|+..+| |.. .+.|..||..+++....... ....++++++++.++
T Consensus 124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLY 203 (305)
T ss_dssp EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEE
T ss_pred ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEE
Confidence 1 134678999999998886 332 25688888866654332211 112356677777777
Q ss_pred EEeCC------CeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885 153 VGTAG------RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR 226 (327)
Q Consensus 153 ~~~~d------~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~ 226 (327)
++... +.|.+||+.... + .. . .+. .+...
T Consensus 204 v~~~~~~~~~~~~i~~~~~~~~~-l--------~~--~--------------------~~~-~~~~~------------- 238 (305)
T 3dr2_A 204 VSQTPEQGHGSVEITAFAWRDGA-L--------HD--R--------------------RHF-ASVPD------------- 238 (305)
T ss_dssp EEECCC---CCCEEEEEEEETTE-E--------EE--E--------------------EEE-ECCSS-------------
T ss_pred EEecCCcCCCCCEEEEEEecCCC-c--------cC--C--------------------eEE-EECCC-------------
Confidence 66554 577777764321 0 00 0 000 00000
Q ss_pred eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885 227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~ 299 (327)
.....++++++|++.++. .+ .|.+|+. +++.+..+.... .+.+++|+|+++.|..++...
T Consensus 239 ---------~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 239 ---------GLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ---------SCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred ---------CCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 013457889999865554 44 4999997 566666665444 578999999999888886543
No 209
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.20 E-value=3.3e-11 Score=106.81 Aligned_cols=201 Identities=11% Similarity=0.084 Sum_probs=108.7
Q ss_pred CcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEE-eCCceEEEEecCCcEEEEEcCCCceee-eecCC-ccEE-EE
Q psy11885 28 NQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETV-IGTHD-QPIR-AV 103 (327)
Q Consensus 28 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~-~~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~~h~-~~V~-~l 103 (327)
+..+++++.|+.|+.||..+|++.-.... +++.+..+ .++..+++++.|+.|+.||.++++... ...+. ..+. +.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp 87 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP 87 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence 35788999999999999999987654444 45544433 455577777899999999997765432 22111 1110 00
Q ss_pred EEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeee
Q psy11885 104 EYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQT 183 (327)
Q Consensus 104 ~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 183 (327)
.+. ++..+++++.|+.|..||.++|+.++.+..+.. ...++.+..+++++.++.|+.||.++++......
T Consensus 88 ~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-------- 157 (369)
T 2hz6_A 88 CRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT-------- 157 (369)
T ss_dssp CC------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEE--------
T ss_pred eEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-ccccccCCEEEEEecCCEEEEEECCCCCEEEeEe--------
Confidence 111 345788888999999999999998877765432 2234467788888889999999988765221100
Q ss_pred EEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC---CeEEEecCCCeEE
Q psy11885 184 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY---NTFATGGSDGYVN 260 (327)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~---~~lasgs~dg~i~ 260 (327)
. .. + ...++.++. ..+++++.||.|+
T Consensus 158 ----~---------~~---------~-----------------------------~~~~~~~~~~~~~~v~~~~~dg~v~ 186 (369)
T 2hz6_A 158 ----Y---------FD---------Y-----------------------------AASLPEDDVDYKMSHFVSNGDGLVV 186 (369)
T ss_dssp ----E---------EE---------E-----------------------------CCBCCCCCTTCCCCEEEEETSCEEE
T ss_pred ----c---------cc---------c-----------------------------cCccccCCccccceEEEECCCCEEE
Confidence 0 00 0 001111211 3566788899999
Q ss_pred EEeCCCceeeeecCcCCcce-EEEEECCCCCE
Q psy11885 261 IWDGFNKKRLCQFHRYDTGI-TSLCFSYDGNV 291 (327)
Q Consensus 261 iWd~~~~~~~~~~~~~~~~v-~~l~fspdg~~ 291 (327)
.||..+++.+.+.. ...++ ...++++||..
T Consensus 187 a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 187 TVDSESGDVLWIQN-YASPVVAFYVWQREGLR 217 (369)
T ss_dssp EECTTTCCEEEEEE-CSSCEEEEEECTTSSCE
T ss_pred EEECCCCcEEEEec-CCCceEEEEEecCCceE
Confidence 99999998877765 33454 44578888864
No 210
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.18 E-value=8.7e-09 Score=87.96 Aligned_cols=198 Identities=9% Similarity=-0.123 Sum_probs=113.1
Q ss_pred cCCCceeeEEEe-CCc-eEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCcee
Q psy11885 55 AHSDPVLDCCFQ-DAV-HSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132 (327)
Q Consensus 55 ~h~~~v~~~~~~-~~~-~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~ 132 (327)
.+.....+++|. ++. .++++..++.|..||.+++ ...+..+...+.+++++++|+++++...++.|.+||.++++..
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 333445677885 555 5678888999999999887 5555566778899999999998777777799999999877653
Q ss_pred eeeeC-C------CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885 133 GNYTQ-P------DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA 205 (327)
Q Consensus 133 ~~~~~-~------~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (327)
..... . ...+.+++.|..+++.+..++...++... .... .+...
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~-------~~~~----------------------~~~~~ 154 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG-------GEME----------------------LPGRW 154 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC-------CCCC----------------------SSSCE
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc-------cccc----------------------CCCcE
Confidence 32211 0 01234444454444311100000000000 0000 00001
Q ss_pred EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCC-Ccee---eeecCcCCcceE
Q psy11885 206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGF-NKKR---LCQFHRYDTGIT 281 (327)
Q Consensus 206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~-~~~~---~~~~~~~~~~v~ 281 (327)
++.++.... ... +..+ ....+.++|+|+++.|++.+.++.|++|++. +++. ...+..+...+.
T Consensus 155 l~~~~~~g~---~~~-~~~~---------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~ 221 (296)
T 3e5z_A 155 VFRLAPDGT---LSA-PIRD---------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTD 221 (296)
T ss_dssp EEEECTTSC---EEE-EECC---------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCC
T ss_pred EEEECCCCC---EEE-eecC---------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCC
Confidence 111211100 000 0000 0124679999999999888888999999986 4433 222222334467
Q ss_pred EEEECCCCCEEEEE
Q psy11885 282 SLCFSYDGNVLAIA 295 (327)
Q Consensus 282 ~l~fspdg~~la~~ 295 (327)
.++|+++|+++++.
T Consensus 222 ~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 222 GLRVDAGGLIWASA 235 (296)
T ss_dssp SEEEBTTSCEEEEE
T ss_pred eEEECCCCCEEEEc
Confidence 89999999977766
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.13 E-value=1.5e-09 Score=95.94 Aligned_cols=146 Identities=13% Similarity=0.212 Sum_probs=107.3
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-----------EEEEecCCCceeeEEEeCCceEEEEecCCcEEE
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-----------LRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKM 82 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~v 82 (327)
+...++.+++++. ..++++|+.+ .+.+|++...+ ......+.. |..++| ++..++.+ .++.|++
T Consensus 36 ~~~~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 36 PFASLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CSSCCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEEE-ESSEEEE
T ss_pred CcccccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEEE-cCCcEEE
Confidence 3457999999995 5688888877 45669864322 112345666 999999 88888888 8999999
Q ss_pred EEcCCCce-eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEE
Q psy11885 83 FDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVC 161 (327)
Q Consensus 83 wd~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 161 (327)
||+.+... .....|+.++.++.+.+. .+++++.||.|.+||+.++.... +.. .+.+++++++.++.|..||+++
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~~--~Vs~v~WSpkG~~vg~~dg~i~ 185 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LAQ--NVTSFDVTNSQLAVLLKDRSFQ 185 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EEE--SEEEEEECSSEEEEEETTSCEE
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-ccC--CceEEEEcCCceEEEEcCCcEE
Confidence 99876543 345567778888777653 39999999999999999876643 222 3445555555588999999999
Q ss_pred EEECCCCc
Q psy11885 162 IWDLRNMG 169 (327)
Q Consensus 162 iwD~~~~~ 169 (327)
+|+.....
T Consensus 186 ~~~~~~~~ 193 (388)
T 1xip_A 186 SFAWRNGE 193 (388)
T ss_dssp EEEEETTE
T ss_pred EEcCCCcc
Confidence 99877654
No 212
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.12 E-value=4.1e-09 Score=89.40 Aligned_cols=175 Identities=13% Similarity=0.065 Sum_probs=119.2
Q ss_pred CCceEEEEecCCcEEEEEcCCCcee-eeecCC-ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC--cE-
Q psy11885 67 DAVHSFSGGLDCTLKMFDFNTQTET-VIGTHD-QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD--KV- 141 (327)
Q Consensus 67 ~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~-~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~--~~- 141 (327)
+++.+++++.|+.|.+||.++++.. .+..+. ..+.++.++|+|+.++ +.++.|..||. +++.++.+..+. .+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 5678889999999999999777654 344444 4678899999999888 46889999998 899888887642 23
Q ss_pred -EEEecCCCeEEEEeC-CCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce
Q psy11885 142 -FTMSLCGEKFVVGTA-GRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK 219 (327)
Q Consensus 142 -~~~~~~~~~~~~~~~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 219 (327)
....++|+.+++.+. ++.|..+|.. ++.+.. . . ...... .
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~------------~------------~---------~~~~~~-~--- 122 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNMK-GEVLSK------------T------------E---------FETGIE-R--- 122 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECTT-SCEEEE------------E------------E---------ECCSCS-S---
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEE------------E------------e---------ccCCCC-c---
Confidence 234566777777666 5666666642 221100 0 0 000000 0
Q ss_pred eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885 220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
.|. +...+++.++|.++++.+.++.|..||.. |+.+.++... ....++.+.|+|++|++++..
T Consensus 123 ----~~~----------~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~ 185 (276)
T 3no2_A 123 ----PHA----------QFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDA 185 (276)
T ss_dssp ----GGG----------SCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTT
T ss_pred ----ccc----------cccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCC
Confidence 000 12345678999999999999999999987 8888877543 345677888888888776543
No 213
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.11 E-value=1.4e-08 Score=85.17 Aligned_cols=195 Identities=10% Similarity=0.014 Sum_probs=125.1
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI 93 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~ 93 (327)
..+.++++++++ .++++.. ++.|.+||..++...... .....+..+++. ++...++...++.|.+|+..+......
T Consensus 67 ~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 144 (270)
T ss_dssp CSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred CCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence 568899999964 5555544 889999998776543322 222457788885 565555666678999997655433222
Q ss_pred -ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC-CcE--EEEecCCCeEEEEeCCCeEEEEECCCCc
Q psy11885 94 -GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP-DKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMG 169 (327)
Q Consensus 94 -~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~ 169 (327)
......+..++++++++.+++...++.|.+||............. ... ++++..|..+++...++.|.+||..+..
T Consensus 145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 222345688999999987777777889999998776543321111 223 3445556445555557788888875321
Q ss_pred cceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe
Q psy11885 170 YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249 (327)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~ 249 (327)
.. . ... .. ...+.+++++|+|+.
T Consensus 225 ~~----------------~--------------------~~~-~~--------------------~~~p~~i~~~~~g~l 247 (270)
T 1rwi_B 225 ST----------------V--------------------LPF-TG--------------------LNTPLAVAVDSDRTV 247 (270)
T ss_dssp CE----------------E--------------------CCC-CS--------------------CSCEEEEEECTTCCE
T ss_pred ce----------------e--------------------ecc-CC--------------------CCCceeEEECCCCCE
Confidence 00 0 000 00 002457899999998
Q ss_pred EEEecCCCeEEEEeCCCcee
Q psy11885 250 FATGGSDGYVNIWDGFNKKR 269 (327)
Q Consensus 250 lasgs~dg~i~iWd~~~~~~ 269 (327)
+++...++.|++++....++
T Consensus 248 ~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 248 YVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEEGGGTEEEEECCCGGGS
T ss_pred EEEECCCCEEEEEcCCCccc
Confidence 89988999999999876544
No 214
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.09 E-value=2.1e-08 Score=96.37 Aligned_cols=110 Identities=10% Similarity=0.051 Sum_probs=75.4
Q ss_pred CceeeEEEe-CCceEEEEecCC-----cEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCe-----------
Q psy11885 58 DPVLDCCFQ-DAVHSFSGGLDC-----TLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTS----------- 120 (327)
Q Consensus 58 ~~v~~~~~~-~~~~~~sgs~Dg-----~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~----------- 120 (327)
..+...+|+ ++.+++.++.++ .|++||+.++...........+..++|+|||+.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 356778885 777777554433 899999998865432222223667999999999999988876
Q ss_pred -----EEEEeCCCCcee--eeeeC---CC--cEEEEecCCCeEEEEeC-----CCeEEEEECCC
Q psy11885 121 -----VKMWDPRSSRCV--GNYTQ---PD--KVFTMSLCGEKFVVGTA-----GRKVCIWDLRN 167 (327)
Q Consensus 121 -----i~lwdl~~~~~~--~~~~~---~~--~~~~~~~~~~~~~~~~~-----d~~v~iwD~~~ 167 (327)
|++|++.+++.. ..+.. +. ....++++|+.++..+. +..|.+||+.+
T Consensus 205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 999999887632 11222 22 23567788888877654 56788888764
No 215
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.07 E-value=9e-08 Score=79.20 Aligned_cols=192 Identities=11% Similarity=0.110 Sum_probs=123.3
Q ss_pred EEEEecCCCce--eeEEEeCCceEEEEecCC--cEEEEEcCCCceeeeecCCccE--EEEEEeCCCCEEEEEE-CCCeEE
Q psy11885 50 LRLKYAHSDPV--LDCCFQDAVHSFSGGLDC--TLKMFDFNTQTETVIGTHDQPI--RAVEYSDEVNCILTGS-WDTSVK 122 (327)
Q Consensus 50 ~~~~~~h~~~v--~~~~~~~~~~~~sgs~Dg--~i~vwd~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~sgs-~d~~i~ 122 (327)
+...+.|...- ..+.|.++....|++.+| .|+++|+++++......-.... ..++. +++.|+... .++.+.
T Consensus 33 vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEE
T ss_pred EEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEE
Confidence 34456676543 677888665555777776 8999999988753211111222 33444 345666554 488999
Q ss_pred EEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC
Q psy11885 123 MWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG 202 (327)
Q Consensus 123 lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (327)
++|.++.+.+.++..+..-..++.+++.++.+..++.|.++|..+++... .+..-. +
T Consensus 111 v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~------------~I~V~~----------~- 167 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVR------------TITVTA----------H- 167 (262)
T ss_dssp EEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEE------------EEECEE----------T-
T ss_pred EEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEE------------EEEecc----------C-
Confidence 99999999999988765556667778888777667889999988754211 000000 0
Q ss_pred eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC------
Q psy11885 203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY------ 276 (327)
Q Consensus 203 ~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~------ 276 (327)
+.. ...++.+.|. +|+.+|..-.+..|.+.|..+++.+..+...
T Consensus 168 ---------g~~--------------------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~ 217 (262)
T 3nol_A 168 ---------GEE--------------------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEA 217 (262)
T ss_dssp ---------TEE--------------------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGS
T ss_pred ---------Ccc--------------------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccc
Confidence 000 0013345554 6666666666788999999998877665321
Q ss_pred ------CcceEEEEECCCCCEEEEEE
Q psy11885 277 ------DTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 277 ------~~~v~~l~fspdg~~la~~~ 296 (327)
....+.|||+|+++.|.+++
T Consensus 218 ~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 218 GPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccccCcCCceEEEEEcCCCCEEEEEC
Confidence 12458899999988777776
No 216
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.07 E-value=8e-07 Score=78.58 Aligned_cols=236 Identities=9% Similarity=-0.058 Sum_probs=135.7
Q ss_pred EEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEecC--------CCceeeEEEe-CCceEEEEec--CC
Q psy11885 20 AVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYAH--------SDPVLDCCFQ-DAVHSFSGGL--DC 78 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~h--------~~~v~~~~~~-~~~~~~sgs~--Dg 78 (327)
.++|+|++ ++|+++. .++.|.+||..+.+......- ......++++ ++.+++.++. ++
T Consensus 70 ~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence 89999965 5666554 367899999988765433211 1123466774 8888988764 57
Q ss_pred cEEEEEcCCCceeee-ecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeeeee------CCCcE---EEEecC
Q psy11885 79 TLKMFDFNTQTETVI-GTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGNYT------QPDKV---FTMSLC 147 (327)
Q Consensus 79 ~i~vwd~~~~~~~~~-~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~~~------~~~~~---~~~~~~ 147 (327)
.|.++| .+++.... ...... +.+.+++ +.+++.+.||++..+|. +++...... ....+ ..+...
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 899999 87765322 222222 3344544 45667788999999999 777653321 11111 122333
Q ss_pred CCeEEEEeCCCeEEEEECCCCccc-eeeec--c----c---ceeeeEEeEEeeCCCceEEEeec--------CeEEEEEc
Q psy11885 148 GEKFVVGTAGRKVCIWDLRNMGYI-MQRRE--S----S---LKFQTRCIKCFPNKQGYVLSSIE--------GRAAVEYL 209 (327)
Q Consensus 148 ~~~~~~~~~d~~v~iwD~~~~~~~-~~~~~--~----~---~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~ 209 (327)
+..++..+.++.|.+.|+.+.... ..... . . .+.....+.++++++.+.++... ....|+.+
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 445555557788999998654211 01000 0 0 01111224566665555544321 12234445
Q ss_pred cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC-eEEEec-CCCeEEEEeCCCceeeeec
Q psy11885 210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGG-SDGYVNIWDGFNKKRLCQF 273 (327)
Q Consensus 210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs-~dg~i~iWd~~~~~~~~~~ 273 (327)
|..... +...+.. + .....++|+|||+ .++++. .++.|.+||..+++.+..+
T Consensus 304 D~~t~~--vv~~i~~--------g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 304 TGLVGQ--TSSQISL--------G--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCCE--EEEEEEC--------C--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 543211 1111110 0 1257899999999 777776 4899999999999988773
No 217
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.05 E-value=6.6e-07 Score=75.76 Aligned_cols=219 Identities=5% Similarity=-0.046 Sum_probs=129.0
Q ss_pred CceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee
Q psy11885 58 DPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN 134 (327)
Q Consensus 58 ~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~ 134 (327)
..+.++++. ++...++...++.|.+||.. +....+ ..+...+..+++++++...++...++.|..||.. ++. ..
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~ 91 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KE 91 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EE
Confidence 456777774 55544555557899999987 444332 2345678999999999887777778999999986 332 22
Q ss_pred eeC---CCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEc
Q psy11885 135 YTQ---PDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYL 209 (327)
Q Consensus 135 ~~~---~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 209 (327)
+.. .... +.+.+++..+++...++.|.+||. +++......... ...+..+.+.+++..+++....+.+ ..+
T Consensus 92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i--~~~ 167 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK-GSYPSFITLGSDNALWFTENQNNAI--GRI 167 (299)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTSCEEEEETTTTEE--EEE
T ss_pred EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC-CCCCceEEEcCCCCEEEEeCCCCEE--EEE
Confidence 221 1223 334445655555566789999998 333211111111 1123555555555444433323333 334
Q ss_pred cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee-cCcCCcceEEEEECCC
Q psy11885 210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYD 288 (327)
Q Consensus 210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~-~~~~~~~v~~l~fspd 288 (327)
+...... ..... . . ...+..+++++++..+++...++.|.+||. +++.... .......+.+++++|+
T Consensus 168 ~~~g~~~--~~~~~-----~-~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 168 TESGDIT--EFKIP-----T-P---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG 235 (299)
T ss_dssp CTTCCEE--EEECS-----S-T---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred cCCCcEE--EeeCC-----C-C---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC
Confidence 4311110 00000 0 0 013568999999998888777899999998 6553322 2333456889999999
Q ss_pred CCEEEEE
Q psy11885 289 GNVLAIA 295 (327)
Q Consensus 289 g~~la~~ 295 (327)
|+++++.
T Consensus 236 g~l~v~~ 242 (299)
T 2z2n_A 236 IDLWFTE 242 (299)
T ss_dssp TCEEEEE
T ss_pred CCEEEec
Confidence 9976654
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.05 E-value=1.3e-08 Score=89.60 Aligned_cols=259 Identities=7% Similarity=-0.074 Sum_probs=143.4
Q ss_pred cEEEEEECCC----cEEEEECCCCeEEEEec-CCCceeeEEEe-CCceEEEEe----------cCCcEEEEEcCCCcee-
Q psy11885 29 QFLLASSWDC----NVSLYDITNNNLRLKYA-HSDPVLDCCFQ-DAVHSFSGG----------LDCTLKMFDFNTQTET- 91 (327)
Q Consensus 29 ~~l~s~~~d~----~i~iwd~~~~~~~~~~~-h~~~v~~~~~~-~~~~~~sgs----------~Dg~i~vwd~~~~~~~- 91 (327)
..+++...++ +|.+.|..+++...... ...+ .+.++ ++.+++.+. .+++|.+||..+.+..
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 4444444455 88899999999655443 2234 68885 788888775 3789999999987653
Q ss_pred eeecC-------CccEEEEEEeCCCCEEEEEEC--CCeEEE--EeCCCCceeeeeeCCCcEEEEecCCC-eEEEEeCCCe
Q psy11885 92 VIGTH-------DQPIRAVEYSDEVNCILTGSW--DTSVKM--WDPRSSRCVGNYTQPDKVFTMSLCGE-KFVVGTAGRK 159 (327)
Q Consensus 92 ~~~~h-------~~~V~~l~~~~~~~~l~sgs~--d~~i~l--wdl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~ 159 (327)
.+... ......+.++|||++++.+.. +..|.+ +|+.+ +..+..+.. ..+.+.+. .+++.+.|++
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~~dg~ 186 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGSCPAS 186 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCCCTTS
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEcCCCC
Confidence 23211 122457899999999999875 467888 99877 444443322 11233333 3555667888
Q ss_pred EEEEECCC----CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeE
Q psy11885 160 VCIWDLRN----MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI 235 (327)
Q Consensus 160 v~iwD~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 235 (327)
+.+.|+.+ ...+................ .+++..++..+. +.+.+...............+..-.....+. .-
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~-~p 263 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF-RS 263 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE-EE
T ss_pred EEEEECccccccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc-cc
Confidence 88888876 22111100000000000011 344444444443 4444322221110000000000000000000 00
Q ss_pred EEeeEEEEecCCCeEEEecC---------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 236 YPVNAISFHQEYNTFATGGS---------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 236 ~~v~~v~~spd~~~lasgs~---------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
.....++|+||++.+.++.. ++.+.++|..+++.+..+.... ..+.|+|+|||+++++++.
T Consensus 264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~ 333 (368)
T 1mda_H 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEE
T ss_pred CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEcc
Confidence 01123789999998876532 2355699999999888876443 5689999999996666654
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=1e-06 Score=78.56 Aligned_cols=228 Identities=14% Similarity=0.110 Sum_probs=132.7
Q ss_pred CCceE-EEEecCCcEEEEEcCCC--cee---eee------cCC-ccEEEEEEeCCCCEEEEEECC------CeEEEEeCC
Q psy11885 67 DAVHS-FSGGLDCTLKMFDFNTQ--TET---VIG------THD-QPIRAVEYSDEVNCILTGSWD------TSVKMWDPR 127 (327)
Q Consensus 67 ~~~~~-~sgs~Dg~i~vwd~~~~--~~~---~~~------~h~-~~V~~l~~~~~~~~l~sgs~d------~~i~lwdl~ 127 (327)
++.++ ++|-.+++|.++|+.+. +.. .+. ... ..-..+...|+| .++++..+ +.|.++|.+
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence 34455 47777899999998754 222 221 111 133456677999 66666555 789999999
Q ss_pred CCceeeeeeCC-C---cE--EEEecCCCeEEEEe-------------------CCCeEEEEECCCCccceeeecccceee
Q psy11885 128 SSRCVGNYTQP-D---KV--FTMSLCGEKFVVGT-------------------AGRKVCIWDLRNMGYIMQRRESSLKFQ 182 (327)
Q Consensus 128 ~~~~~~~~~~~-~---~~--~~~~~~~~~~~~~~-------------------~d~~v~iwD~~~~~~~~~~~~~~~~~~ 182 (327)
+++.+.++... . .. +.+++.++.+++.. .+++|.+||+.+.+.............
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 99998887632 1 12 44577788777764 368999999987643322222111122
Q ss_pred eEEeEE--eeCCCceEE-Ee-----ecCeEEEEEccCCcccccce-eeeeeeeecc------CCeee-EEEeeEEEEecC
Q psy11885 183 TRCIKC--FPNKQGYVL-SS-----IEGRAAVEYLDTGPEMQKMK-YAFKCHRIKE------DGIEK-IYPVNAISFHQE 246 (327)
Q Consensus 183 ~~~~~~--~~~~~~~~~-~~-----~~~~~~i~~~~~~~~~~~~~-~~~~~h~~~~------~~~~~-~~~v~~v~~spd 246 (327)
++.+++ +|++....+ .. .++.+.++.++.+. +.... ..+....... .+... ......|.+|||
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 345555 666654444 33 45556655555321 11111 0011110000 00000 013568999999
Q ss_pred CCeEEEecC-CCeEEEEeCCC---ceeeeecCcC-----------C---cceEEEEECCCCCEEEEEE
Q psy11885 247 YNTFATGGS-DGYVNIWDGFN---KKRLCQFHRY-----------D---TGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 247 ~~~lasgs~-dg~i~iWd~~~---~~~~~~~~~~-----------~---~~v~~l~fspdg~~la~~~ 296 (327)
|++|.++.. .+.|.++|+.+ .+.+.++.-. . ..-..+++||||++|.++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999876655 58999999853 3444444221 0 0236799999999999886
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.02 E-value=5.9e-07 Score=80.46 Aligned_cols=250 Identities=12% Similarity=0.020 Sum_probs=145.4
Q ss_pred EEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEecC--------CCceeeEEEe-CCceEEEEec--CC
Q psy11885 20 AVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYAH--------SDPVLDCCFQ-DAVHSFSGGL--DC 78 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~h--------~~~v~~~~~~-~~~~~~sgs~--Dg 78 (327)
.++|+|++. +|+++. .++.|.++|..+++......- ......++|+ ++.+++.+.. ++
T Consensus 122 gia~SpDgk-~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGS-FFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred ceEECCCCC-EEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence 799999764 444443 467999999999886443321 1234467784 7888888764 57
Q ss_pred cEEEEEcCCCcee-eeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCCCceeee----eeCCC----cEEEEecCC
Q psy11885 79 TLKMFDFNTQTET-VIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCVGN----YTQPD----KVFTMSLCG 148 (327)
Q Consensus 79 ~i~vwd~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~~~~~~~----~~~~~----~~~~~~~~~ 148 (327)
+|.+.|+.+.+.. .+.. ... ....|++ ..+++.+.||++...++.+++.... +.... ....+...+
T Consensus 201 ~VsVID~~t~kvv~~I~v-~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg 276 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDV-PDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS 276 (426)
T ss_dssp EEEEEETTTTEEEEEEEC-CSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT
T ss_pred eEEEEECCCCeEEEEEEc-CCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC
Confidence 8999999887643 2221 111 1222332 5566667788877777755554321 11111 112446667
Q ss_pred CeEEEEeCCCeEEEEECCCCccceeee-c----c--cc---eeeeEEeEEeeCCCceEEEeec--------CeEEEEEcc
Q psy11885 149 EKFVVGTAGRKVCIWDLRNMGYIMQRR-E----S--SL---KFQTRCIKCFPNKQGYVLSSIE--------GRAAVEYLD 210 (327)
Q Consensus 149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~-~----~--~~---~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~ 210 (327)
..++..+..+.|.+.|+.......... . . .. +.....+.++++++.+.+.... +...+..+|
T Consensus 277 ~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID 356 (426)
T 3c75_H 277 GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN 356 (426)
T ss_dssp CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE
Confidence 777777788899999986543110000 0 0 00 1111125667776655554321 233455555
Q ss_pred CCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCC-eEEEec-CCCeEEEEeCCCceeeeec-CcCCcceEEEEECC
Q psy11885 211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN-TFATGG-SDGYVNIWDGFNKKRLCQF-HRYDTGITSLCFSY 287 (327)
Q Consensus 211 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~-~lasgs-~dg~i~iWd~~~~~~~~~~-~~~~~~v~~l~fsp 287 (327)
..... +...+.. -...+.++|+||++ .+++.. .++.|.++|..+++.+.++ .....+ .+..+|
T Consensus 357 ~~T~k--vv~~I~v----------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P--~~i~~~ 422 (426)
T 3c75_H 357 AETGE--RINKIEL----------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGP--QIITTH 422 (426)
T ss_dssp TTTCC--EEEEEEE----------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSC--CEEECC
T ss_pred CCCCe--EEEEEEC----------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCC--cEEEcC
Confidence 43321 1111110 01367899999999 777776 5899999999999998886 322333 266666
Q ss_pred C
Q psy11885 288 D 288 (327)
Q Consensus 288 d 288 (327)
|
T Consensus 423 ~ 423 (426)
T 3c75_H 423 D 423 (426)
T ss_dssp C
T ss_pred C
Confidence 5
No 221
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.97 E-value=2.6e-07 Score=76.54 Aligned_cols=192 Identities=8% Similarity=0.050 Sum_probs=123.5
Q ss_pred EEEEecCCCc--eeeEEEeCCceEEEEecCCcEEEEEcCCCceee-eecCCccEEEEEEeCCCCEEE-EEECCCeEEEEe
Q psy11885 50 LRLKYAHSDP--VLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWD 125 (327)
Q Consensus 50 ~~~~~~h~~~--v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~-sgs~d~~i~lwd 125 (327)
+...+.|... ...+.|.++....+++.+|.|+++|+++++... +......-..+++. ++.|+ ....++.+.+||
T Consensus 45 Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEE
Confidence 4445566543 357788776666788989999999999886432 21111122335543 34444 445689999999
Q ss_pred CCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEE
Q psy11885 126 PRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAA 205 (327)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (327)
.++.+.+.++..+..-..++.++..++.+..++.|.++|..+++... .+..... +
T Consensus 123 ~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~------------~I~V~~~----------g--- 177 (268)
T 3nok_A 123 GMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVG------------AVQVKLR----------G--- 177 (268)
T ss_dssp TTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEE------------EEECEET----------T---
T ss_pred CCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEE------------EEEeCCC----------C---
Confidence 99999999988765556667778888887778899999988764211 0100000 0
Q ss_pred EEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc----------
Q psy11885 206 VEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR---------- 275 (327)
Q Consensus 206 i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~---------- 275 (327)
.. ...++.+.|. +|+.+|..-.+..|.+.|..+++.+..+.-
T Consensus 178 -------~~--------------------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~ 229 (268)
T 3nok_A 178 -------QP--------------------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQ 229 (268)
T ss_dssp -------EE--------------------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTT
T ss_pred -------cc--------------------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccc
Confidence 00 0013445555 666666666678899999999887766531
Q ss_pred ---CCcceEEEEECCCCCEEEEEE
Q psy11885 276 ---YDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 276 ---~~~~v~~l~fspdg~~la~~~ 296 (327)
.....+.|||+|+++.|.+++
T Consensus 230 ~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 230 VTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccCcCCceEEEEEcCCCCEEEEeC
Confidence 112468899999866665554
No 222
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.95 E-value=1.1e-06 Score=72.14 Aligned_cols=192 Identities=10% Similarity=0.076 Sum_probs=121.1
Q ss_pred EEEEecCCCc--eeeEEEeCCceEEEEecCC--cEEEEEcCCCceeeeecCCccE--EEEEEeCCCCEEEEE-ECCCeEE
Q psy11885 50 LRLKYAHSDP--VLDCCFQDAVHSFSGGLDC--TLKMFDFNTQTETVIGTHDQPI--RAVEYSDEVNCILTG-SWDTSVK 122 (327)
Q Consensus 50 ~~~~~~h~~~--v~~~~~~~~~~~~sgs~Dg--~i~vwd~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~sg-s~d~~i~ 122 (327)
+...+.|+.. ...+.|.++....|++.+| .|+.+|+.+++......-.... ..++.. ++.|+.. ..++.+.
T Consensus 11 v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEE
Confidence 4455677543 4578888765556777754 8999999988754211111112 234443 4555544 5689999
Q ss_pred EEeCCCCceeeeeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecC
Q psy11885 123 MWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG 202 (327)
Q Consensus 123 lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (327)
++|.++.+.+.++..+..-..+..++..++++..++.|.++|..+++... .+....+
T Consensus 89 v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~------------~I~V~~~----------- 145 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVG------------SIKVTAG----------- 145 (243)
T ss_dssp EEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEE------------EEECEET-----------
T ss_pred EEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEE------------EEEEccC-----------
Confidence 99999999999988766656777778888887778899999988764211 1100000
Q ss_pred eEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-------
Q psy11885 203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR------- 275 (327)
Q Consensus 203 ~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~------- 275 (327)
+... ..++.+.+. +|+.+|..-.+..|.+.|..+++.+..+.-
T Consensus 146 ---------g~~~--------------------~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~ 195 (243)
T 3mbr_X 146 ---------GRPL--------------------DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA 195 (243)
T ss_dssp ---------TEEC--------------------CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred ---------Cccc--------------------ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence 0000 012334443 565565555677888888888887765421
Q ss_pred ------CCcceEEEEECCCCCEEEEEE
Q psy11885 276 ------YDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 276 ------~~~~v~~l~fspdg~~la~~~ 296 (327)
.....+.|||+|+++.|.+++
T Consensus 196 ~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 196 DALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 112468899999877766665
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.94 E-value=2.8e-07 Score=81.35 Aligned_cols=225 Identities=11% Similarity=0.042 Sum_probs=131.3
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCccE------EE
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPI------RA 102 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V------~~ 102 (327)
..+++++.++.|..+|..+++..-.......+.+.....+..++.++.++.|..+|..+++.........++ ..
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 183 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA 183 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCC
Confidence 457778889999999999998654443333332211123457888888999999999887754322222221 11
Q ss_pred EEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE------------EEEecCCCeEEEEeCCCeEEEEECCCCcc
Q psy11885 103 VEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV------------FTMSLCGEKFVVGTAGRKVCIWDLRNMGY 170 (327)
Q Consensus 103 l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~d~~v~iwD~~~~~~ 170 (327)
.... +..++.++.++.|..+|.++++.++........ ......+..+++++.++.+..+|.++++.
T Consensus 184 ~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 184 PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI 261 (376)
T ss_dssp CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE
T ss_pred cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE
Confidence 1222 357888888999999999999988776532110 00112356788888899999999988764
Q ss_pred ceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeE
Q psy11885 171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTF 250 (327)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~l 250 (327)
........ ... ....+..+.+++.++........++.. .+.... .... .+..... .+..|
T Consensus 262 ~w~~~~~~----~~~--~~~~~~~l~~~~~~g~l~~~d~~tG~~----~w~~~~--~~~~------~~~~~~~--~~~~l 321 (376)
T 3q7m_A 262 MWKRELGS----VND--FIVDGNRIYLVDQNDRVMALTIDGGVT----LWTQSD--LLHR------LLTSPVL--YNGNL 321 (376)
T ss_dssp EEEECCCC----EEE--EEEETTEEEEEETTCCEEEEETTTCCE----EEEECT--TTTS------CCCCCEE--ETTEE
T ss_pred EeeccCCC----CCC--ceEECCEEEEEcCCCeEEEEECCCCcE----EEeecc--cCCC------cccCCEE--ECCEE
Confidence 42221111 111 112334455555555544433333221 111100 0000 0111111 24678
Q ss_pred EEecCCCeEEEEeCCCceeeeecCc
Q psy11885 251 ATGGSDGYVNIWDGFNKKRLCQFHR 275 (327)
Q Consensus 251 asgs~dg~i~iWd~~~~~~~~~~~~ 275 (327)
..++.+|.+..+|..+++.+.....
T Consensus 322 ~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEEec
Confidence 8888999999999999988766543
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.93 E-value=1.4e-06 Score=76.94 Aligned_cols=227 Identities=10% Similarity=-0.026 Sum_probs=129.5
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecC----------CCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecCCc
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAH----------SDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQ 98 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~ 98 (327)
..+.+++.++.|..+|..+++..-.... ...+.+.....+..++.++.++.|..+|..+++.........
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 133 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG 133 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence 3577778899999999998886543332 122322222356788888899999999998887643221111
Q ss_pred cE-EEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEE------EEecCCCeEEEEeCCCeEEEEECCCCccc
Q psy11885 99 PI-RAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVF------TMSLCGEKFVVGTAGRKVCIWDLRNMGYI 171 (327)
Q Consensus 99 ~V-~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~v~iwD~~~~~~~ 171 (327)
.+ ...... +..++.++.++.|..+|.++++.++.+....... .....+..+++++.++.|..+|.++++..
T Consensus 134 ~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~ 211 (376)
T 3q7m_A 134 EALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMI 211 (376)
T ss_dssp CCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEE
T ss_pred ceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEE
Confidence 11 111222 3578888999999999999999888776543221 11122567888888999999999887654
Q ss_pred eeeecccceee--eEE---e--EEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885 172 MQRRESSLKFQ--TRC---I--KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH 244 (327)
Q Consensus 172 ~~~~~~~~~~~--~~~---~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 244 (327)
........... ... + .....+..+.+++.++.........+.. .+... . . ....+..
T Consensus 212 w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~----~w~~~---~--~------~~~~~~~- 275 (376)
T 3q7m_A 212 WQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI----MWKRE---L--G------SVNDFIV- 275 (376)
T ss_dssp EEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE----EEEEC---C--C------CEEEEEE-
T ss_pred EEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE----Eeecc---C--C------CCCCceE-
Confidence 32211100000 000 0 0001123344444444444322222221 11110 0 0 1112222
Q ss_pred cCCCeEEEecCCCeEEEEeCCCceeeeecC
Q psy11885 245 QEYNTFATGGSDGYVNIWDGFNKKRLCQFH 274 (327)
Q Consensus 245 pd~~~lasgs~dg~i~iWd~~~~~~~~~~~ 274 (327)
++..+..++.++.+..+|..+++.+....
T Consensus 276 -~~~~l~~~~~~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 276 -DGNRIYLVDQNDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp -ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred -ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence 35677778889999999999998776554
No 225
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.93 E-value=3.3e-06 Score=71.41 Aligned_cols=219 Identities=7% Similarity=-0.020 Sum_probs=127.8
Q ss_pred CceeeEEEe-CCceEEEEecCCcEEEEEcCCCceeee--ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee
Q psy11885 58 DPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTETVI--GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN 134 (327)
Q Consensus 58 ~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~ 134 (327)
..+.++++. ++...++...++.|.+||.. +....+ ..+...+..++++++++..++...++.|..||.. ++.. .
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~ 96 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-E 96 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-E
Confidence 356677774 45555555567899999987 443322 2334568899999999877776668999999987 5542 2
Q ss_pred eeC---CCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEc
Q psy11885 135 YTQ---PDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYL 209 (327)
Q Consensus 135 ~~~---~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 209 (327)
+.. .... +.+...+..+++...++.|..+|.. .+..... .......+..+.+.+++..+++....+.+ ..+
T Consensus 97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i--~~~ 172 (300)
T 2qc5_A 97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQNNSI--GRI 172 (300)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETTTTEE--EEE
T ss_pred ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecCCCeE--EEE
Confidence 221 1223 3344456655555557899999987 3322111 11111224556666655533333223333 334
Q ss_pred cCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee-cCcCCcceEEEEECCC
Q psy11885 210 DTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ-FHRYDTGITSLCFSYD 288 (327)
Q Consensus 210 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~-~~~~~~~v~~l~fspd 288 (327)
+...... .... .. . ...+..+++++++..+++...++.|.+||. +++.... +......+.+++++|+
T Consensus 173 ~~~g~~~--~~~~-----~~-~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 173 TNTGKLE--EYPL-----PT-N---AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKN 240 (300)
T ss_dssp CTTCCEE--EEEC-----SS-T---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred CCCCcEE--EeeC-----CC-C---CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCC
Confidence 4321111 1100 00 0 013568999999988887777889999997 4443322 2223345789999999
Q ss_pred CCEEEEE
Q psy11885 289 GNVLAIA 295 (327)
Q Consensus 289 g~~la~~ 295 (327)
|+++++.
T Consensus 241 g~l~v~~ 247 (300)
T 2qc5_A 241 SEIWFTE 247 (300)
T ss_dssp TCEEEEE
T ss_pred CCEEEec
Confidence 9866655
No 226
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=1.3e-06 Score=72.96 Aligned_cols=192 Identities=8% Similarity=0.073 Sum_probs=123.5
Q ss_pred EEEEecCCCc--eeeEEEeCCceEEEE-ec--CCcEEEEEcCCCceee-e--ecCCccEEEEEEeCCCCEEEEE-ECCCe
Q psy11885 50 LRLKYAHSDP--VLDCCFQDAVHSFSG-GL--DCTLKMFDFNTQTETV-I--GTHDQPIRAVEYSDEVNCILTG-SWDTS 120 (327)
Q Consensus 50 ~~~~~~h~~~--v~~~~~~~~~~~~sg-s~--Dg~i~vwd~~~~~~~~-~--~~h~~~V~~l~~~~~~~~l~sg-s~d~~ 120 (327)
+...+.|... ...+.|.+...++.+ +. +++|++.|+.+++... + ..+ .....+++. ++.|+.+ ..++.
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCE
Confidence 3444566543 467888653456544 33 5799999999887532 2 222 222345554 4556555 45789
Q ss_pred EEEEeCCCCceeeeeeCC-CcEEEEecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEe
Q psy11885 121 VKMWDPRSSRCVGNYTQP-DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS 199 (327)
Q Consensus 121 i~lwdl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (327)
+.++|..+.+.+.++... ..-..++++++.++++..++.|.++|.++.+.. ..+.. +.
T Consensus 88 v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~------------~~I~V---------g~ 146 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLI------------KKHNV---------KY 146 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEE------------EEEEC---------EE
T ss_pred EEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEE------------EEEEE---------CC
Confidence 999999999998888755 444567778888887777889999998775421 00000 00
Q ss_pred ecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcC---
Q psy11885 200 IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY--- 276 (327)
Q Consensus 200 ~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~--- 276 (327)
... ....++.+.|. ++..++....++.|.+-|..+++.+..+.-.
T Consensus 147 -----------~~~--------------------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~ 194 (266)
T 2iwa_A 147 -----------NGH--------------------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLR 194 (266)
T ss_dssp -----------TTE--------------------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHH
T ss_pred -----------CCc--------------------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcc
Confidence 000 00014556676 6766666667889999999999887776421
Q ss_pred ----------CcceEEEEECCCCCEEEEEEc
Q psy11885 277 ----------DTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 277 ----------~~~v~~l~fspdg~~la~~~~ 297 (327)
......|+|+|+++.|..++.
T Consensus 195 ~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 195 KKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp HHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred cccccccccccCceEEEEEcCCCCEEEEECC
Confidence 023589999999987777763
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.87 E-value=2.9e-07 Score=80.96 Aligned_cols=245 Identities=9% Similarity=-0.014 Sum_probs=141.3
Q ss_pred EEEEecCCCcEEEEEE----------CCCcEEEEECCCCeEEEEec-C-------CCceeeEEEe-CCceEEEEec--CC
Q psy11885 20 AVKFAPNSNQFLLASS----------WDCNVSLYDITNNNLRLKYA-H-------SDPVLDCCFQ-DAVHSFSGGL--DC 78 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~-h-------~~~v~~~~~~-~~~~~~sgs~--Dg 78 (327)
.++|+|++. ++.++. .++.|.+||..+++...... . ......++++ ++.+++.+.. +.
T Consensus 69 ~i~~spDg~-~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~ 147 (368)
T 1mda_H 69 LAVAGHSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred ceEECCCCC-EEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence 799999764 455443 37899999999998654432 2 0224567885 7888888764 45
Q ss_pred cEEE--EEcCCCceeeeecCCccEEEEEEeCCC-CEEEEEECCCeEEEEeCCC-----Cceeee----eeCCCcEEEEec
Q psy11885 79 TLKM--FDFNTQTETVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRS-----SRCVGN----YTQPDKVFTMSL 146 (327)
Q Consensus 79 ~i~v--wd~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~sgs~d~~i~lwdl~~-----~~~~~~----~~~~~~~~~~~~ 146 (327)
.+.+ +|..+ ...+.. ... +.+.|++ ..+++.+.|+++.+.|+.+ ++.... +........ ..
T Consensus 148 ~v~V~~iD~~t--v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~ 220 (368)
T 1mda_H 148 AAGLSVPGASD--DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-AN 220 (368)
T ss_dssp EEEEEETTTEE--EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ET
T ss_pred eEEEEEEchhh--ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccc-cc
Confidence 6888 88876 222221 111 1122333 3455667788888888876 443311 111111112 55
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcc-ceeee-c-------cc-ceeeeEEeEEeeCCCceEEEee-c-C-------eEEEE
Q psy11885 147 CGEKFVVGTAGRKVCIWDLRNMGY-IMQRR-E-------SS-LKFQTRCIKCFPNKQGYVLSSI-E-G-------RAAVE 207 (327)
Q Consensus 147 ~~~~~~~~~~d~~v~iwD~~~~~~-~~~~~-~-------~~-~~~~~~~~~~~~~~~~~~~~~~-~-~-------~~~i~ 207 (327)
.+..++..+. +.|.+.|+.+... +.... . .. .+.....+.+.++++.+.++.. . + ...+.
T Consensus 221 ~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi 299 (368)
T 1mda_H 221 YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEE
Confidence 5666666666 8999999864321 11100 0 00 0111122567777766665543 2 2 33343
Q ss_pred EccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCe-EEEec-CCCeEEEEeCCCceeeeecCcCCcceEEEEE
Q psy11885 208 YLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT-FATGG-SDGYVNIWDGFNKKRLCQFHRYDTGITSLCF 285 (327)
Q Consensus 208 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~-lasgs-~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~f 285 (327)
...+......+. .. .....++|+||+++ +++.. .+++|.++|+.+++.+.++..... -+.+++
T Consensus 300 D~~t~~vv~~i~--vg------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~ 364 (368)
T 1mda_H 300 TASVGQTSGPIS--NG------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp ESSSCCEEECCE--EE------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred ECCCCeEEEEEE--CC------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEe
Confidence 333332211111 11 13678999999985 55666 589999999999999988875544 367787
Q ss_pred CCC
Q psy11885 286 SYD 288 (327)
Q Consensus 286 spd 288 (327)
.+.
T Consensus 365 ~~~ 367 (368)
T 1mda_H 365 QNE 367 (368)
T ss_dssp CCC
T ss_pred ecC
Confidence 653
No 228
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.84 E-value=1.5e-06 Score=74.23 Aligned_cols=149 Identities=7% Similarity=0.076 Sum_probs=89.6
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE-ecC-----CCceeeEEEe-CCceEEEEecC-----------
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK-YAH-----SDPVLDCCFQ-DAVHSFSGGLD----------- 77 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~h-----~~~v~~~~~~-~~~~~~sgs~D----------- 77 (327)
..+.+++++++++.+++ ++.++.|.+||.. ++.... ... ...+.++++. ++...++...+
T Consensus 71 ~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 57899999996244444 4445579999998 765443 221 1246778884 55555555444
Q ss_pred ----CcEEEEEcCCCceeeeecCCccEEEEEEe----CCCCEEEEE-ECCCeEEEEeCC-CCce-----eeeeeCC--Cc
Q psy11885 78 ----CTLKMFDFNTQTETVIGTHDQPIRAVEYS----DEVNCILTG-SWDTSVKMWDPR-SSRC-----VGNYTQP--DK 140 (327)
Q Consensus 78 ----g~i~vwd~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~sg-s~d~~i~lwdl~-~~~~-----~~~~~~~--~~ 140 (327)
+.|..||.+ +....+..+......++++ ++++.++.+ ..++.|.+||++ +++. ...+... ..
T Consensus 149 ~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 227 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG 227 (314)
T ss_dssp SSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred cCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC
Confidence 456666654 3333333333456889999 998766555 567999999976 3431 1222211 11
Q ss_pred --EEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885 141 --VFTMSLCGEKFVVGTAGRKVCIWDLRN 167 (327)
Q Consensus 141 --~~~~~~~~~~~~~~~~d~~v~iwD~~~ 167 (327)
.++++.+|..+++...++.|.+||.++
T Consensus 228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred CCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 234455566566555677888888753
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.82 E-value=8.4e-07 Score=84.70 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=90.6
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEecCCCc-----------e-eeEEEeCCceEEEEecCCcEEEEEcCCCceee-eecC
Q psy11885 30 FLLASSWDCNVSLYDITNNNLRLKYAHSDP-----------V-LDCCFQDAVHSFSGGLDCTLKMFDFNTQTETV-IGTH 96 (327)
Q Consensus 30 ~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~-----------v-~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~-~~~h 96 (327)
.|++++.++.|.-+|..+|+.+-.+..... + ..+++ .+..++.++.|+.+..+|..+++... ...+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 157 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAATGKEVWHQNTF 157 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEETT
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEECCCCCEEeeecCC
Confidence 566777789999999999997655432211 1 12222 45678888999999999998887643 2222
Q ss_pred -C----ccEEE-EEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeCCC-------------------------
Q psy11885 97 -D----QPIRA-VEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQPD------------------------- 139 (327)
Q Consensus 97 -~----~~V~~-l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~~~------------------------- 139 (327)
. ..+.+ ... . +..++.++. ++.|+.||.++++.++.+....
T Consensus 158 ~~~~~~~~~~~~p~v-~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~ 235 (677)
T 1kb0_A 158 EGQKGSLTITGAPRV-F-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW 235 (677)
T ss_dssp TTCCSSCBCCSCCEE-E-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred cCcCcCcccccCcEE-E-CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCce
Confidence 1 11111 111 1 345555543 7999999999999887765311
Q ss_pred ----------cEEEEecCCCeEEEEeCCC-------------------eEEEEECCCCccce
Q psy11885 140 ----------KVFTMSLCGEKFVVGTAGR-------------------KVCIWDLRNMGYIM 172 (327)
Q Consensus 140 ----------~~~~~~~~~~~~~~~~~d~-------------------~v~iwD~~~~~~~~ 172 (327)
....+++.++.+++++.++ +|..+|.++++..-
T Consensus 236 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W 297 (677)
T 1kb0_A 236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW 297 (677)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred eEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence 1234566677788776653 59999999887543
No 230
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.78 E-value=7e-06 Score=78.23 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=92.8
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEecCC-----Cceee-EEEeCCceEEEEec------CCcEEEEEcCCCceee-eec-
Q psy11885 30 FLLASSWDCNVSLYDITNNNLRLKYAHS-----DPVLD-CCFQDAVHSFSGGL------DCTLKMFDFNTQTETV-IGT- 95 (327)
Q Consensus 30 ~l~s~~~d~~i~iwd~~~~~~~~~~~h~-----~~v~~-~~~~~~~~~~sgs~------Dg~i~vwd~~~~~~~~-~~~- 95 (327)
.+++++.|+.|.-+|..+|++.-..... ..+.+ -... +..++.+.. ++.|..+|.++++... +..
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 197 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV 197 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence 5777888999999999999865433211 11111 1122 345555443 5899999998887643 111
Q ss_pred -CC-----------------------------ccEEEEEEeCCCCEEEEEECCC-------------------eEEEEeC
Q psy11885 96 -HD-----------------------------QPIRAVEYSDEVNCILTGSWDT-------------------SVKMWDP 126 (327)
Q Consensus 96 -h~-----------------------------~~V~~l~~~~~~~~l~sgs~d~-------------------~i~lwdl 126 (327)
.. .....++++++.+.++.++.++ .|..+|.
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~ 277 (668)
T 1kv9_A 198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP 277 (668)
T ss_dssp CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred CCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC
Confidence 00 0112467888888898887766 4999999
Q ss_pred CCCceeeeeeCC----------CcE--EEEecCCC---eEEEEeCCCeEEEEECCCCccc
Q psy11885 127 RSSRCVGNYTQP----------DKV--FTMSLCGE---KFVVGTAGRKVCIWDLRNMGYI 171 (327)
Q Consensus 127 ~~~~~~~~~~~~----------~~~--~~~~~~~~---~~~~~~~d~~v~iwD~~~~~~~ 171 (327)
++++.++.++.. ... ..+..+++ .++.++.+|.+.++|.++++.+
T Consensus 278 ~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 278 DTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 999998877642 111 22334554 4788889999999999988765
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.72 E-value=1.3e-06 Score=80.51 Aligned_cols=254 Identities=12% Similarity=0.086 Sum_probs=148.5
Q ss_pred eEEEEe---cCCCcEEEEEE-CCCcEEEEECCCCeEEEE--ecCCCceeeEEE---eCCceEEEEe--------------
Q psy11885 19 TAVKFA---PNSNQFLLASS-WDCNVSLYDITNNNLRLK--YAHSDPVLDCCF---QDAVHSFSGG-------------- 75 (327)
Q Consensus 19 ~~i~fs---~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~--~~h~~~v~~~~~---~~~~~~~sgs-------------- 75 (327)
..+++. +++ ++|.... .++.|.+-|+.+.++... ..-......+++ +++.+++.++
T Consensus 90 ~~~s~t~g~~DG-~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDG-RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEE-EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCC-CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 455552 343 5555555 456799999999986542 222344667776 5788888774
Q ss_pred ----cCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCC--------------------------------
Q psy11885 76 ----LDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDT-------------------------------- 119 (327)
Q Consensus 76 ----~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~-------------------------------- 119 (327)
.++.+.+.|.++.+....-.-.+.-..++++++|+++++.+++.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred cccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 34578889988765432111111235577899999999888653
Q ss_pred ------eEEEEeCCC--Cce-eeeeeC--CCcEEEEecCCCeEEEEe-CCCeEEEEECCCCccceeeecccceeeeEEeE
Q psy11885 120 ------SVKMWDPRS--SRC-VGNYTQ--PDKVFTMSLCGEKFVVGT-AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIK 187 (327)
Q Consensus 120 ------~i~lwdl~~--~~~-~~~~~~--~~~~~~~~~~~~~~~~~~-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~ 187 (327)
.|.+.|.++ ++. +..+.. ......++++|++++++. .+++|.++|+++.+... ...+.
T Consensus 249 k~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~---~~~l~------- 318 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF---YENAD------- 318 (595)
T ss_dssp CSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH---HSCCC-------
T ss_pred CeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc---ccccC-------
Confidence 366777776 433 344432 223467788888766654 56789999987532110 00000
Q ss_pred EeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCC-
Q psy11885 188 CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN- 266 (327)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~- 266 (327)
+. ..+.+. ... +. ....++|+|+|...++---|+.|-+||+.+
T Consensus 319 --~~--~~v~~~---------v~v-------------------G~----gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a 362 (595)
T 1fwx_A 319 --PR--SAVVAE---------PEL-------------------GL----GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 362 (595)
T ss_dssp --GG--GGEEEC---------CBC-------------------CS----CEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred --cc--cceEEE---------cCC-------------------CC----CcceEEECCCCeEEEEEecCCcEEEEEhhHh
Confidence 00 000000 000 00 134689999995555677799999999876
Q ss_pred ---------ceeeeecCcCCcce-----EEEEECCCCCEEEEEEccccccCCCCCCCCCCcEEEEEc
Q psy11885 267 ---------KKRLCQFHRYDTGI-----TSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHV 319 (327)
Q Consensus 267 ---------~~~~~~~~~~~~~v-----~~l~fspdg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (327)
.+.+.++..|-.+- ..+.++|||++|.++.....-..-+--++++.+--+|-+
T Consensus 363 ~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~di 429 (595)
T 1fwx_A 363 IRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDI 429 (595)
T ss_dssp HHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEEC
T ss_pred hhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEc
Confidence 34455554443321 234679999999999877655544433444444344444
No 232
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.68 E-value=0.00012 Score=62.61 Aligned_cols=249 Identities=11% Similarity=0.047 Sum_probs=136.9
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCC--cEEEEEcCCCceee
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDC--TLKMFDFNTQTETV 92 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg--~i~vwd~~~~~~~~ 92 (327)
.....++|+++ +.++++...++.|..||..++.. ........+..+++. ++..+++..... .|..+|..++....
T Consensus 32 ~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~~~-~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPD-GTIFVTNHEVGEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTT-SCEEEEETTTTEEEEECTTCCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCC-CCEEEEeCCCCeEEEECCCCceE-EEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45678999995 45666655788999999876543 233334457778885 555433333222 35556666655433
Q ss_pred eec--CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCce-eee----e---e---CCCcEEEEecCCCeEEEE-eCCC
Q psy11885 93 IGT--HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC-VGN----Y---T---QPDKVFTMSLCGEKFVVG-TAGR 158 (327)
Q Consensus 93 ~~~--h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~-~~~----~---~---~~~~~~~~~~~~~~~~~~-~~d~ 158 (327)
+.. .......++..+++..+++-..++.|..+|..+++. +.. + . .......+++++..++++ +..+
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~ 189 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKM 189 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCC
Confidence 221 122234455545444444444588999999875421 110 0 0 001122235566655444 4456
Q ss_pred eEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEe
Q psy11885 159 KVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV 238 (327)
Q Consensus 159 ~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v 238 (327)
.|..+|+...... ... .+. ... ...
T Consensus 190 ~I~~~~~~~~g~~-----~~~-------------------------~~~-~~~------------------------~~P 214 (306)
T 2p4o_A 190 LLLRIPVDSTDKP-----GEP-------------------------EIF-VEQ------------------------TNI 214 (306)
T ss_dssp EEEEEEBCTTSCB-----CCC-------------------------EEE-EES------------------------CCC
T ss_pred EEEEEEeCCCCCC-----Ccc-------------------------EEE-ecc------------------------CCC
Confidence 7777776531100 000 000 000 013
Q ss_pred eEEEEecCCCeEEEecCCCeEEEEeCCCcee--eeecCcCCcceEEEEEC---CCCCEEEEEEccccccCCCCCCCCCCc
Q psy11885 239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQFHRYDTGITSLCFS---YDGNVLAIACSYNYELETPPDPIPPNN 313 (327)
Q Consensus 239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~--~~~~~~~~~~v~~l~fs---pdg~~la~~~~~~~~~~~~~~~~~~~~ 313 (327)
..++++++|.++++....+.|.++|.. ++. +..+...-...++++|. ||++.|.+++........ ........
T Consensus 215 ~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~~~~~~-~~~~~~g~ 292 (306)
T 2p4o_A 215 DDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPP-PTGVVPAN 292 (306)
T ss_dssp SSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTTSSSCC-TTCCCCEE
T ss_pred CCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCCcccCC-Ccccccce
Confidence 457889999888877778899999964 554 22333222457899999 898888777665433322 12234556
Q ss_pred EEEEEccccc
Q psy11885 314 IFIRHVTDQE 323 (327)
Q Consensus 314 ~~~~~~~~~~ 323 (327)
||-+.+--.|
T Consensus 293 v~~i~~~~~G 302 (306)
T 2p4o_A 293 VVRLEVGKPG 302 (306)
T ss_dssp EEEEECSSCB
T ss_pred EEEEecCCCC
Confidence 8887764433
No 233
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.68 E-value=2.6e-05 Score=72.91 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=89.4
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCCC-----ceee-EEEeCCceEEEEec------CCcEEEEEcCCCceeeeecC
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHSD-----PVLD-CCFQDAVHSFSGGL------DCTLKMFDFNTQTETVIGTH 96 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-----~v~~-~~~~~~~~~~sgs~------Dg~i~vwd~~~~~~~~~~~h 96 (327)
..+++++.|+.+..+|..+|++.-...... .+.+ .... +..++.++. ++.|..+|.++++.......
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 357777889999999999998654332111 2221 1122 345666654 78999999998875431110
Q ss_pred Ccc--------------------------------------E-EEEEEeCCCCEEEEEECC----------------CeE
Q psy11885 97 DQP--------------------------------------I-RAVEYSDEVNCILTGSWD----------------TSV 121 (327)
Q Consensus 97 ~~~--------------------------------------V-~~l~~~~~~~~l~sgs~d----------------~~i 121 (327)
..+ + ..+++.++...++.++.+ +.|
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v 274 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence 000 0 235677777777766532 369
Q ss_pred EEEeCCCCceeeeeeCCC----------c-E-EEEecCCC---eEEEEeCCCeEEEEECCCCccc
Q psy11885 122 KMWDPRSSRCVGNYTQPD----------K-V-FTMSLCGE---KFVVGTAGRKVCIWDLRNMGYI 171 (327)
Q Consensus 122 ~lwdl~~~~~~~~~~~~~----------~-~-~~~~~~~~---~~~~~~~d~~v~iwD~~~~~~~ 171 (327)
..+|.++++.++.++... . + .....+|+ .++.++.+|.+.++|.++++.+
T Consensus 275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence 999999999888765321 1 1 11223453 4667888999999999888754
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.65 E-value=4.1e-09 Score=93.27 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=58.3
Q ss_pred CCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc--E-EE
Q psy11885 67 DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK--V-FT 143 (327)
Q Consensus 67 ~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~--~-~~ 143 (327)
.+..+++++.|+.|..||..+++....... .++.+..+..++..+++++.|+.|..||.++++.++.+..... + ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 467889999999999999988876532222 3444444556677788888999999999988887665543210 0 00
Q ss_pred Eec-CCCeEEEEeCCCeEEEEECCCCc
Q psy11885 144 MSL-CGEKFVVGTAGRKVCIWDLRNMG 169 (327)
Q Consensus 144 ~~~-~~~~~~~~~~d~~v~iwD~~~~~ 169 (327)
... .+..+++++.++.|..||.++++
T Consensus 87 p~~~~~~~v~~g~~dg~v~a~D~~tG~ 113 (369)
T 2hz6_A 87 PCRSSDGILYMGKKQDIWYVIDLLTGE 113 (369)
T ss_dssp SCC-----CCCCEEEEEEEEECCC---
T ss_pred ceEecCCEEEEEeCCCEEEEEECCCCc
Confidence 011 34456777788889999887654
No 235
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.65 E-value=5.9e-05 Score=70.68 Aligned_cols=141 Identities=15% Similarity=0.118 Sum_probs=90.5
Q ss_pred EEEEECCCcEEEEECCCCeEEEEecCCC-----ceee-EEEeCCceEEEEe------cCCcEEEEEcCCCceeeeecCCc
Q psy11885 31 LLASSWDCNVSLYDITNNNLRLKYAHSD-----PVLD-CCFQDAVHSFSGG------LDCTLKMFDFNTQTETVIGTHDQ 98 (327)
Q Consensus 31 l~s~~~d~~i~iwd~~~~~~~~~~~h~~-----~v~~-~~~~~~~~~~sgs------~Dg~i~vwd~~~~~~~~~~~h~~ 98 (327)
++.++.|+.+.-+|..+|++.-...... .+.+ -...+ ..++.++ .++.|+.+|.++++.........
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~ 202 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEEC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence 6778889999999999998654332111 2221 12233 3555554 38999999999887643211110
Q ss_pred c--------------------------------------E-EEEEEeCCCCEEEEEECC----------------CeEEE
Q psy11885 99 P--------------------------------------I-RAVEYSDEVNCILTGSWD----------------TSVKM 123 (327)
Q Consensus 99 ~--------------------------------------V-~~l~~~~~~~~l~sgs~d----------------~~i~l 123 (327)
+ + ....+.++...++.+..+ +.|..
T Consensus 203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 0 1 134567777888877655 38999
Q ss_pred EeCCCCceeeeeeCCC----------cEEEEe---cCC---CeEEEEeCCCeEEEEECCCCccce
Q psy11885 124 WDPRSSRCVGNYTQPD----------KVFTMS---LCG---EKFVVGTAGRKVCIWDLRNMGYIM 172 (327)
Q Consensus 124 wdl~~~~~~~~~~~~~----------~~~~~~---~~~---~~~~~~~~d~~v~iwD~~~~~~~~ 172 (327)
+|.++++.++.++... ....+. .+| ..++.++.+|.+.++|.++++.+.
T Consensus 283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 9999999888776421 112222 346 346668899999999999887643
No 236
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.61 E-value=0.00013 Score=68.21 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=90.0
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCCC-----cee-eEEEeCC----c-eEEEEe------cCCcEEEEEcCCCcee
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHSD-----PVL-DCCFQDA----V-HSFSGG------LDCTLKMFDFNTQTET 91 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-----~v~-~~~~~~~----~-~~~sgs------~Dg~i~vwd~~~~~~~ 91 (327)
..++.++.|+.+.-+|..+|++.-...-.. .+. .-...++ . .++.++ .++.|..+|..+++..
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence 357778889999999999998654332111 111 1122222 1 566654 3789999999887754
Q ss_pred eeecCC-cc----------------------------------------E-EEEEEeCCCCEEEEEEC------------
Q psy11885 92 VIGTHD-QP----------------------------------------I-RAVEYSDEVNCILTGSW------------ 117 (327)
Q Consensus 92 ~~~~h~-~~----------------------------------------V-~~l~~~~~~~~l~sgs~------------ 117 (327)
...... .. + ...+++++...++.+..
T Consensus 198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~ 277 (582)
T 1flg_A 198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTA 277 (582)
T ss_dssp EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSC
T ss_pred eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccccc
Confidence 321100 00 0 12466777778887663
Q ss_pred --------C----CeEEEEeCCCCceeeeeeCC-C---------cEEEEe---cCCC---eEEEEeCCCeEEEEECCCCc
Q psy11885 118 --------D----TSVKMWDPRSSRCVGNYTQP-D---------KVFTMS---LCGE---KFVVGTAGRKVCIWDLRNMG 169 (327)
Q Consensus 118 --------d----~~i~lwdl~~~~~~~~~~~~-~---------~~~~~~---~~~~---~~~~~~~d~~v~iwD~~~~~ 169 (327)
| +.|..+|.++++.++.++.. . ....+. .+|+ .++.++.+|.+.++|.++++
T Consensus 278 ~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 278 KGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp TTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred CCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 2 68999999999998877531 1 112222 3454 57778899999999998877
Q ss_pred cc
Q psy11885 170 YI 171 (327)
Q Consensus 170 ~~ 171 (327)
.+
T Consensus 358 ~l 359 (582)
T 1flg_A 358 LQ 359 (582)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 237
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.59 E-value=3.3e-05 Score=65.75 Aligned_cols=182 Identities=13% Similarity=0.176 Sum_probs=104.9
Q ss_pred cEEEEEEeCCCC-EEEEEECCCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccceeee
Q psy11885 99 PIRAVEYSDEVN-CILTGSWDTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRR 175 (327)
Q Consensus 99 ~V~~l~~~~~~~-~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~ 175 (327)
-.....|+++.+ ++++...+++|..||..+++. ..+..+..+ +.++++++ ++++. ++.|.+||.++.+......
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEe
Confidence 345778888654 555666789999999987764 333333333 44555666 55554 6789999987654321111
Q ss_pred c-cc-ceeeeEEeEEeeCCCceEEEeec---------CeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEe
Q psy11885 176 E-SS-LKFQTRCIKCFPNKQGYVLSSIE---------GRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFH 244 (327)
Q Consensus 176 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s 244 (327)
. .. .....+.+++.+++..++..... ....++.++....... .. ......+.++|+
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~----------~~~~~pngi~~s 157 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YF----------DQVDISNGLDWS 157 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EE----------EEESBEEEEEEC
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---Ee----------eccccccceEEc
Confidence 1 11 11224566777776644333221 2345555553221110 00 011135789999
Q ss_pred cCCCeE-EEecCCCeEEEEeC--CCcee-----eeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885 245 QEYNTF-ATGGSDGYVNIWDG--FNKKR-----LCQFHRYDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 245 pd~~~l-asgs~dg~i~iWd~--~~~~~-----~~~~~~~~~~v~~l~fspdg~~la~~~ 296 (327)
||++.| ++.+.++.|.+|++ .++.. ...+.........++++++|++.++..
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~ 217 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY 217 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc
Confidence 999876 55666789999986 34432 222333334568899999998776654
No 238
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.58 E-value=1.5e-05 Score=71.32 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=93.3
Q ss_pred EEEecCCCcEEEEEECCC--cEEEEECCCCeEEEEe----c-CCCceeeEEEeC-CceEEEEecCCcEEEEEcCCCceee
Q psy11885 21 VKFAPNSNQFLLASSWDC--NVSLYDITNNNLRLKY----A-HSDPVLDCCFQD-AVHSFSGGLDCTLKMFDFNTQTETV 92 (327)
Q Consensus 21 i~fs~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~----~-h~~~v~~~~~~~-~~~~~sgs~Dg~i~vwd~~~~~~~~ 92 (327)
++|+|++ ..|+++..++ .|.+++..++...... . ....+.++++.+ +..++.+..++.|..||.+++....
T Consensus 176 ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~ 254 (409)
T 3hrp_A 176 PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL 254 (409)
T ss_dssp CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE
T ss_pred eeEecCC-CcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE
Confidence 8999964 5777777665 7889988765432222 2 334567788864 6677777778899999998765443
Q ss_pred e-----ecCCcc--EEEEEEeCC-CCEEEEEECCCeEEEEeCCCCceeeeeeCC-----------------CcEEEEecC
Q psy11885 93 I-----GTHDQP--IRAVEYSDE-VNCILTGSWDTSVKMWDPRSSRCVGNYTQP-----------------DKVFTMSLC 147 (327)
Q Consensus 93 ~-----~~h~~~--V~~l~~~~~-~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~-----------------~~~~~~~~~ 147 (327)
+ .++... ...++|+|+ +.++++-...++|+.||.... ........ ..-++++++
T Consensus 255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d 333 (409)
T 3hrp_A 255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED 333 (409)
T ss_dssp EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence 3 112222 238999995 555555567899999997643 11111110 123556667
Q ss_pred CCeEEEEe-CCCeEEEEECCCC
Q psy11885 148 GEKFVVGT-AGRKVCIWDLRNM 168 (327)
Q Consensus 148 ~~~~~~~~-~d~~v~iwD~~~~ 168 (327)
|+.+++-+ .++.|+.||+.++
T Consensus 334 G~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 334 GNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp CCEEEEETTTTCEEEEEETTTT
T ss_pred CCEEEEeCCCCCEEEEEECCCC
Confidence 77566656 6789999997543
No 239
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.58 E-value=7.2e-06 Score=78.43 Aligned_cols=141 Identities=15% Similarity=0.136 Sum_probs=90.2
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCCCc-----------e-eeEEEeCCceEEEEecCCcEEEEEcCCCceeeee-c
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDP-----------V-LDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIG-T 95 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~-----------v-~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~-~ 95 (327)
..|++++.++.|.-+|..+|+.+-.+..... + ...++ .+..++.++.|+.|..+|..+++..... .
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 3567777889999999999987654432211 1 11222 3567888999999999999988764321 1
Q ss_pred --CC---ccEEE-EEEeCCCCEEEEEE------CCCeEEEEeCCCCceeeeeeC-C---C--------------------
Q psy11885 96 --HD---QPIRA-VEYSDEVNCILTGS------WDTSVKMWDPRSSRCVGNYTQ-P---D-------------------- 139 (327)
Q Consensus 96 --h~---~~V~~-l~~~~~~~~l~sgs------~d~~i~lwdl~~~~~~~~~~~-~---~-------------------- 139 (327)
+. ..+.+ -.+ .++ .++.++ .++.|..||.++++.++.+.. + .
T Consensus 150 ~~~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 150 RADHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp CSCTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCCCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 11 11110 011 133 455443 378999999999998877642 1 0
Q ss_pred ----------cEEEEecCCCeEEEEeCCC-------------------eEEEEECCCCccce
Q psy11885 140 ----------KVFTMSLCGEKFVVGTAGR-------------------KVCIWDLRNMGYIM 172 (327)
Q Consensus 140 ----------~~~~~~~~~~~~~~~~~d~-------------------~v~iwD~~~~~~~~ 172 (327)
...++++..+.+++++.++ .|..||.++++..-
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W 289 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW 289 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeE
Confidence 1234555667788887765 39999999887653
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.50 E-value=2.4e-05 Score=67.13 Aligned_cols=204 Identities=11% Similarity=0.077 Sum_probs=100.2
Q ss_pred CceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCc-E--EEE
Q psy11885 68 AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK-V--FTM 144 (327)
Q Consensus 68 ~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~-~--~~~ 144 (327)
+..++.++.++.+..+|.+.........+...+.++...+++..++... ++.|..+|.. ++.+..+..... + ...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSN-DNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECT-TSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcC-CCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 4556666667777777766554443333444555556666666666663 4667777766 655554443221 1 122
Q ss_pred ecCCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885 145 SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224 (327)
Q Consensus 145 ~~~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 224 (327)
...+ .+.+++ +.|..+| .+++......... ....++...++ ..+.+++.++.... ++... .....+..
T Consensus 185 d~~g-~l~v~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~-g~l~v~t~~~gl~~--~~~~g---~~~~~~~~ 252 (330)
T 3hxj_A 185 GKDG-TIYFGS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISED-GTIYVTSLDGHLYA--INPDG---TEKWRFKT 252 (330)
T ss_dssp CTTC-CEEEES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTT-SCEEEEETTTEEEE--ECTTS---CEEEEEEC
T ss_pred cCCC-EEEEEe--CEEEEEC-CCCcEEEEEccCC--cceeceEECCC-CeEEEEcCCCeEEE--ECCCC---CEeEEeeC
Confidence 2223 344444 6666677 4443322211110 01112222222 23444444333322 22211 01111110
Q ss_pred eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
. .. .+.++...+++ .|..++.+|.+..+|. +++.+..+......+.++...++|++.+ ++.
T Consensus 253 ~----~~-----~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~ 313 (330)
T 3hxj_A 253 G----KR-----IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTR 313 (330)
T ss_dssp S----SC-----CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECT
T ss_pred C----CC-----ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcC
Confidence 0 00 12234444455 5666778888999995 6666665544445577888888887665 543
No 241
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.49 E-value=0.00035 Score=58.22 Aligned_cols=215 Identities=9% Similarity=0.004 Sum_probs=126.5
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC-CCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceee
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH-SDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETV 92 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h-~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~ 92 (327)
..+..++|+++++.++++...++.|..++..++........ -.....+++. ++..++ +-...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 35678999996555555555678999999987654333322 2356778885 455565 44456789999987654333
Q ss_pred ee-cCCccEEEEEEeCCCCEEEEEEC---CCeEEEEeCCCCceeeeee-C-C--CcEEEEecCCCeEEEE-eCCCeEEEE
Q psy11885 93 IG-THDQPIRAVEYSDEVNCILTGSW---DTSVKMWDPRSSRCVGNYT-Q-P--DKVFTMSLCGEKFVVG-TAGRKVCIW 163 (327)
Q Consensus 93 ~~-~h~~~V~~l~~~~~~~~l~sgs~---d~~i~lwdl~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~-~~d~~v~iw 163 (327)
+. ........+++++++..|+.+.. .+.|..+++... ....+. . . ..-+++++.+..++.+ ...+.|.++
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 32 22234688999997766666554 368888887532 222221 1 1 1234555555565544 345677777
Q ss_pred ECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885 164 DLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISF 243 (327)
Q Consensus 164 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~ 243 (327)
|...... .. + .... . ....++.
T Consensus 195 ~~~g~~~-------------~~--~--------------------~~~~------~-----------------~P~gi~~ 216 (267)
T 1npe_A 195 NPAQPGR-------------RK--V--------------------LEGL------Q-----------------YPFAVTS 216 (267)
T ss_dssp ETTEEEE-------------EE--E--------------------EECC------C-----------------SEEEEEE
T ss_pred ecCCCce-------------EE--E--------------------ecCC------C-----------------CceEEEE
Confidence 7653110 00 0 0000 0 0123444
Q ss_pred ecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCc-ceEEEEECCCCC
Q psy11885 244 HQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDT-GITSLCFSYDGN 290 (327)
Q Consensus 244 spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~-~v~~l~fspdg~ 290 (327)
. .+..+++...++.|..+|..+++.+..+..... ..+.+++.|++.
T Consensus 217 d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 217 Y-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp E-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 3 333444555568999999988888877754332 357899999876
No 242
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.48 E-value=6.1e-06 Score=79.04 Aligned_cols=189 Identities=10% Similarity=0.006 Sum_probs=108.6
Q ss_pred CCccEEEEEEeCCCCEEEEE-----ECCCeEEEEeCCCCceeee-eeCC-CcEEEEecCCCeEEEEeCCC----------
Q psy11885 96 HDQPIRAVEYSDEVNCILTG-----SWDTSVKMWDPRSSRCVGN-YTQP-DKVFTMSLCGEKFVVGTAGR---------- 158 (327)
Q Consensus 96 h~~~V~~l~~~~~~~~l~sg-----s~d~~i~lwdl~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~d~---------- 158 (327)
|...+..+.|||||++|+-+ +.+.+|++||+.+++.+.. +... ....+++ +++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 45578889999999988843 3335799999999986543 2221 2345677 888888887763
Q ss_pred ---eEEEEECCCCcc--ceeeeccc-ceeeeEEeEEeeCCCceEEEeecC--eEEEEEccCCcccccceeeeeeeeeccC
Q psy11885 159 ---KVCIWDLRNMGY--IMQRRESS-LKFQTRCIKCFPNKQGYVLSSIEG--RAAVEYLDTGPEMQKMKYAFKCHRIKED 230 (327)
Q Consensus 159 ---~v~iwD~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~h~~~~~ 230 (327)
.|++|++.+... ........ .+.....+.++++++.+++....+ ...+++++......... .+..+. .
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-~l~~~~---~ 281 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-TVQGDL---D 281 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-EEECSS---S
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-EEeCCC---C
Confidence 499999876532 11111111 111123456778877666554422 23566665432211111 111111 0
Q ss_pred CeeeEEEeeEEEEecCCCeEE-EecCC---CeEEEEeCCCcee--eeecCcCCcceEEEEECCCCCEEEEEEcc
Q psy11885 231 GIEKIYPVNAISFHQEYNTFA-TGGSD---GYVNIWDGFNKKR--LCQFHRYDTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 231 ~~~~~~~v~~v~~spd~~~la-sgs~d---g~i~iWd~~~~~~--~~~~~~~~~~v~~l~fspdg~~la~~~~~ 298 (327)
..... +++++..|+ +...+ +.|..+|+.++.. ...+..+...+. .|+|+|++|+.....
T Consensus 282 ------~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~ 346 (693)
T 3iuj_A 282 ------ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV 346 (693)
T ss_dssp ------SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred ------ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence 01122 566666554 44333 5799999887643 233434444444 999999999887653
No 243
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.46 E-value=9.6e-05 Score=70.27 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=70.4
Q ss_pred EEEEecCCCcEEEEEECCC-----------cEEEEECCCCeEEEE--e--cCCCceeeEEE-eCCceEEEEec-CCcEEE
Q psy11885 20 AVKFAPNSNQFLLASSWDC-----------NVSLYDITNNNLRLK--Y--AHSDPVLDCCF-QDAVHSFSGGL-DCTLKM 82 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~--~--~h~~~v~~~~~-~~~~~~~sgs~-Dg~i~v 82 (327)
++++.|.++++++.||.+. .+.+||..+++-... . .+.....++++ .++..++.||. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 6677774467888887653 588999988762211 1 12222334455 46777778874 468999
Q ss_pred EEcCCCceeeeec-CC-ccEEEEEEeCCCCEEEEEE-CC-----CeEEEEeCCCCce
Q psy11885 83 FDFNTQTETVIGT-HD-QPIRAVEYSDEVNCILTGS-WD-----TSVKMWDPRSSRC 131 (327)
Q Consensus 83 wd~~~~~~~~~~~-h~-~~V~~l~~~~~~~~l~sgs-~d-----~~i~lwdl~~~~~ 131 (327)
||..++.-..+.. +. ..-.+++..++++.++.|+ .+ ..+.+||+.+++.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 9988765332221 11 1113445557889888888 44 5789999988764
No 244
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.41 E-value=0.00021 Score=61.66 Aligned_cols=148 Identities=10% Similarity=-0.090 Sum_probs=88.3
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC-----CCceeeEEEe-CCceEEEEecC----CcEEEEEc
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH-----SDPVLDCCFQ-DAVHSFSGGLD----CTLKMFDF 85 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h-----~~~v~~~~~~-~~~~~~sgs~D----g~i~vwd~ 85 (327)
..|.+++|+|+ +.++++ +. +.|.+||..+++....... ...+..+++. ++...++...+ ....+|.+
T Consensus 90 ~~v~~i~~~~d-g~l~v~-~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~ 166 (326)
T 2ghs_A 90 FMGSALAKISD-SKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 166 (326)
T ss_dssp SCEEEEEEEET-TEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CcceEEEEeCC-CeEEEE-EC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence 57999999996 455554 33 4599999988876443322 1246777775 55544433321 23455544
Q ss_pred CCCceeeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCC--CC-ce-----eeeeeC-CCc--EEEEecCCCeEEE
Q psy11885 86 NTQTETVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPR--SS-RC-----VGNYTQ-PDK--VFTMSLCGEKFVV 153 (327)
Q Consensus 86 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~--~~-~~-----~~~~~~-~~~--~~~~~~~~~~~~~ 153 (327)
+.+....+..+......++|+++++.++.+ +.++.|.+||+. ++ +. +..+.. ... .+.++..|..+++
T Consensus 167 ~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva 246 (326)
T 2ghs_A 167 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA 246 (326)
T ss_dssp ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred eCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE
Confidence 433333332333456789999999877555 557899999985 55 32 112211 112 2344555665555
Q ss_pred EeCCCeEEEEECC
Q psy11885 154 GTAGRKVCIWDLR 166 (327)
Q Consensus 154 ~~~d~~v~iwD~~ 166 (327)
...++.|.+||..
T Consensus 247 ~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 247 RWGEGAVDRYDTD 259 (326)
T ss_dssp EETTTEEEEECTT
T ss_pred EeCCCEEEEECCC
Confidence 5567889999984
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.40 E-value=0.0001 Score=61.49 Aligned_cols=177 Identities=7% Similarity=-0.030 Sum_probs=108.0
Q ss_pred CeeEEEEecCCCcEEEEEEC--CCcEEEEECCCCeEEEEecCCC--ceeeEEEeCCceEE-EEecCCcEEEEEcCCCcee
Q psy11885 17 GITAVKFAPNSNQFLLASSW--DCNVSLYDITNNNLRLKYAHSD--PVLDCCFQDAVHSF-SGGLDCTLKMFDFNTQTET 91 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~h~~--~v~~~~~~~~~~~~-sgs~Dg~i~vwd~~~~~~~ 91 (327)
....++|+|+ +.++++.+. ++.|++.|..+++......-.. ....+++. +..++ +.-.++.+.++|..+.+..
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4679999996 455555553 5799999999998655443211 12234554 44555 5555789999999876543
Q ss_pred -eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC------c--EEEEecCCCeEEEE-eCCCeEE
Q psy11885 92 -VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD------K--VFTMSLCGEKFVVG-TAGRKVC 161 (327)
Q Consensus 92 -~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~-~~d~~v~ 161 (327)
.+..-... ...+++|++.++.+..+++|.++|.++.+.+..+.... . .+.+. ++ .+.+. ..++.|.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIA 175 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEE
Confidence 23211111 12345577777777678999999999988777765321 1 12233 44 45444 4578999
Q ss_pred EEECCCCccceeeecccc-----------eeeeEEeEEeeCCCceEEEe
Q psy11885 162 IWDLRNMGYIMQRRESSL-----------KFQTRCIKCFPNKQGYVLSS 199 (327)
Q Consensus 162 iwD~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 199 (327)
+-|.++++.+.......+ ....+.+++.++++.+.++.
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 999998875433322111 02346777777765544443
No 246
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.35 E-value=8e-05 Score=61.65 Aligned_cols=149 Identities=7% Similarity=-0.065 Sum_probs=96.2
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCce--eeEEEeCCceEEEEecCCcEEEEEcCCCcee-e
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPV--LDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-V 92 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v--~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~-~ 92 (327)
.-...+.|+. +.++.+.+.+|.|+++|+.+++..... -.... -.+++..+........++.+.++|.++.+.. .
T Consensus 55 ~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 3457899984 578888888999999999999853333 22222 2244443333335556889999999887653 2
Q ss_pred eecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC------cEEEEec-CCCeEEEEe-CCCeEEEEE
Q psy11885 93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD------KVFTMSL-CGEKFVVGT-AGRKVCIWD 164 (327)
Q Consensus 93 ~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~-~d~~v~iwD 164 (327)
+.. ...-..++ ++++.|+.+..+++|.++|.++.+.+..+.... ....+.+ +| .+.++. .++.|.+-|
T Consensus 132 i~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG-~lyanvw~s~~I~vID 207 (268)
T 3nok_A 132 TRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG-VIYANIWHSSDVLEID 207 (268)
T ss_dssp EEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT-EEEEEETTCSEEEEEC
T ss_pred EeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC-EEEEEECCCCeEEEEe
Confidence 221 22223444 456777777779999999999998877765421 1112222 45 454544 578899999
Q ss_pred CCCCccc
Q psy11885 165 LRNMGYI 171 (327)
Q Consensus 165 ~~~~~~~ 171 (327)
.++++..
T Consensus 208 p~TG~V~ 214 (268)
T 3nok_A 208 PATGTVV 214 (268)
T ss_dssp TTTCBEE
T ss_pred CCCCcEE
Confidence 9887754
No 247
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.35 E-value=0.00013 Score=63.52 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=97.0
Q ss_pred CCCCeeEEEEecCCCcEEEEEEC-----CCcEEEEECCCCeEEEEecC-------CCceeeEEEe-CCceEE-EEe---c
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSW-----DCNVSLYDITNNNLRLKYAH-------SDPVLDCCFQ-DAVHSF-SGG---L 76 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~h-------~~~v~~~~~~-~~~~~~-sgs---~ 76 (327)
+...+..++|+++ ++++++... ++.|.+||+.++++...+.. ...+..+++. ++..++ +.. .
T Consensus 65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3468999999996 455554332 57899999998885443321 1235678886 444554 444 6
Q ss_pred CCcEEEEEcCCCceee-eecC-----------------------------CccEEEEEEeCCCCEEEEEECCC-eEEEEe
Q psy11885 77 DCTLKMFDFNTQTETV-IGTH-----------------------------DQPIRAVEYSDEVNCILTGSWDT-SVKMWD 125 (327)
Q Consensus 77 Dg~i~vwd~~~~~~~~-~~~h-----------------------------~~~V~~l~~~~~~~~l~sgs~d~-~i~lwd 125 (327)
++.|.+||+.++.... +..| ...+..++++|+++.|+.+..++ .|..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 7899999987665432 2221 01357899999999998887766 554444
Q ss_pred CC---CCc-----ee---eeeeC--CCcEEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885 126 PR---SSR-----CV---GNYTQ--PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM 168 (327)
Q Consensus 126 l~---~~~-----~~---~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~ 168 (327)
.. .+. .. ..... ...-++++..|..+++...++.|.+||.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence 21 110 01 11111 1123667777877888888899999998443
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.34 E-value=0.00047 Score=59.22 Aligned_cols=150 Identities=13% Similarity=0.029 Sum_probs=96.3
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec-C-------------------CCceeeEEEeC-CceEEEEe
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-H-------------------SDPVLDCCFQD-AVHSFSGG 75 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-h-------------------~~~v~~~~~~~-~~~~~sgs 75 (327)
...+++|+++ +.++.++..++.|..||..+++...... . ...+..+++.. ...++.+.
T Consensus 20 ~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 3457899985 5667777888999999988766443221 0 12456777763 56677776
Q ss_pred cCCcEEEEEcCCCceeeeec-----CCccEEEEEEeC-CCCEEEEEEC-----------------CCeEEEEeCCCCcee
Q psy11885 76 LDCTLKMFDFNTQTETVIGT-----HDQPIRAVEYSD-EVNCILTGSW-----------------DTSVKMWDPRSSRCV 132 (327)
Q Consensus 76 ~Dg~i~vwd~~~~~~~~~~~-----h~~~V~~l~~~~-~~~~l~sgs~-----------------d~~i~lwdl~~~~~~ 132 (327)
..+.|..+|.+++....+.. .......+++.+ +|+..++-.. ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 66668888876553332221 112467899999 8876665432 367889998766543
Q ss_pred eeee--CCCcEEEEecCCCeEEEE-eCCCeEEEEECCC
Q psy11885 133 GNYT--QPDKVFTMSLCGEKFVVG-TAGRKVCIWDLRN 167 (327)
Q Consensus 133 ~~~~--~~~~~~~~~~~~~~~~~~-~~d~~v~iwD~~~ 167 (327)
.... ....-++++++++.++++ +..+.|.+||+..
T Consensus 179 ~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 2211 112245677777766655 5668999999875
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.31 E-value=0.00016 Score=59.72 Aligned_cols=174 Identities=8% Similarity=-0.017 Sum_probs=105.5
Q ss_pred CeeEEEEecCCCcEEEEEECCC--cEEEEECCCCeEEEEecCCCcee--eEEEeCCceEE-EEecCCcEEEEEcCCCcee
Q psy11885 17 GITAVKFAPNSNQFLLASSWDC--NVSLYDITNNNLRLKYAHSDPVL--DCCFQDAVHSF-SGGLDCTLKMFDFNTQTET 91 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~h~~~v~--~~~~~~~~~~~-sgs~Dg~i~vwd~~~~~~~ 91 (327)
-...+.|+ + +.++.+.|.+| .|+++|+.+++......-..... .+++. +..++ ..-.++.+.++|.++.+..
T Consensus 44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECccCcEE
Confidence 34789998 3 46777777766 99999999999655443333332 24443 44555 4455889999999887653
Q ss_pred -eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC--C-c-----EEEEecCCCeEEEE-eCCCeEE
Q psy11885 92 -VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP--D-K-----VFTMSLCGEKFVVG-TAGRKVC 161 (327)
Q Consensus 92 -~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~--~-~-----~~~~~~~~~~~~~~-~~d~~v~ 161 (327)
.+.. ...=..++ ++++.|+.+..+++|.++|.++.+.+..+... . . .+.+. .| .+.++ ..++.|.
T Consensus 121 ~ti~~-~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~ 195 (262)
T 3nol_A 121 RSFNY-DGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIV 195 (262)
T ss_dssp EEEEC-SSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEE
T ss_pred EEEEC-CCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEE
Confidence 2221 11113344 45666666656789999999998887776542 1 1 12232 45 44444 4578899
Q ss_pred EEECCCCccceeeecccc----------eeeeEEeEEeeCCCceEEE
Q psy11885 162 IWDLRNMGYIMQRRESSL----------KFQTRCIKCFPNKQGYVLS 198 (327)
Q Consensus 162 iwD~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 198 (327)
+.|.++++.........+ ....+.+++.|..+.+.+.
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 999988775433222111 1123566777665544443
No 250
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.28 E-value=6.8e-05 Score=64.01 Aligned_cols=147 Identities=9% Similarity=0.081 Sum_probs=89.2
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecC-----CCceeeEEEe-CCceEEE----Eec--------
Q psy11885 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAH-----SDPVLDCCFQ-DAVHSFS----GGL-------- 76 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h-----~~~v~~~~~~-~~~~~~s----gs~-------- 76 (327)
.+.+..+++++++ +++++...++.|.+|+.. ++......+ ...+..+++. ++...+| |..
T Consensus 85 ~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~ 162 (305)
T 3dr2_A 85 TAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA 162 (305)
T ss_dssp CSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred CCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence 3568899999964 555544445789999986 554333221 1235567774 5655554 332
Q ss_pred -----CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECC------CeEEEEeCCCCcee--eeeeC----CC
Q psy11885 77 -----DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWD------TSVKMWDPRSSRCV--GNYTQ----PD 139 (327)
Q Consensus 77 -----Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d------~~i~lwdl~~~~~~--~~~~~----~~ 139 (327)
.+.|..+|..++....+. .......++|+|+++.|+.+... +.|.+||+..+... ..+.. ..
T Consensus 163 ~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~p 241 (305)
T 3dr2_A 163 DPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLP 241 (305)
T ss_dssp CCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred ccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCC
Confidence 245666666555543333 33456789999999988877665 78999998754311 11111 11
Q ss_pred cEEEEecCCCeEEEEeCCCeEEEEECC
Q psy11885 140 KVFTMSLCGEKFVVGTAGRKVCIWDLR 166 (327)
Q Consensus 140 ~~~~~~~~~~~~~~~~~d~~v~iwD~~ 166 (327)
..+.++..|+ +.+++. +.|.+||..
T Consensus 242 dgi~~d~~G~-lwv~~~-~gv~~~~~~ 266 (305)
T 3dr2_A 242 DGFCVDRGGW-LWSSSG-TGVCVFDSD 266 (305)
T ss_dssp CSEEECTTSC-EEECCS-SEEEEECTT
T ss_pred CeEEECCCCC-EEEecC-CcEEEECCC
Confidence 2345566676 455554 459999975
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.24 E-value=0.0012 Score=53.97 Aligned_cols=155 Identities=8% Similarity=0.026 Sum_probs=97.8
Q ss_pred CCCCCCeeEEEEecCCCcEEEEEECC--CcEEEEECCCCeEEEEecCCCce--eeEEEeCCceEEEEecCCcEEEEEcCC
Q psy11885 12 SPPEDGITAVKFAPNSNQFLLASSWD--CNVSLYDITNNNLRLKYAHSDPV--LDCCFQDAVHSFSGGLDCTLKMFDFNT 87 (327)
Q Consensus 12 ~~~~~~I~~i~fs~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~h~~~v--~~~~~~~~~~~~sgs~Dg~i~vwd~~~ 87 (327)
+....-...+.|++ +.++.+.|.+ ..|+.+|+.+++......-.... -.+++..+........++.+.++|.++
T Consensus 17 hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t 94 (243)
T 3mbr_X 17 HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT 94 (243)
T ss_dssp CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence 34445677999996 4677777775 48999999999976554332222 233444333333556688999999988
Q ss_pred Ccee-eeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCC------cEEEEecCCCeEEEEe-CCCe
Q psy11885 88 QTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD------KVFTMSLCGEKFVVGT-AGRK 159 (327)
Q Consensus 88 ~~~~-~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~d~~ 159 (327)
.+.. .+.. ...=..|+ ++++.|+.+..+++|.++|.++.+.+..+.... ....+.+.+..+.+.. .++.
T Consensus 95 l~~~~ti~~-~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~ 171 (243)
T 3mbr_X 95 LTPRARFRY-PGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSR 171 (243)
T ss_dssp TEEEEEEEC-SSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTE
T ss_pred CcEEEEEeC-CCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCe
Confidence 7653 2221 12223454 456666666668999999999988877765421 1122333334454444 5778
Q ss_pred EEEEECCCCccc
Q psy11885 160 VCIWDLRNMGYI 171 (327)
Q Consensus 160 v~iwD~~~~~~~ 171 (327)
|.+.|.++++..
T Consensus 172 I~vIDp~tG~V~ 183 (243)
T 3mbr_X 172 IARIDPASGKVV 183 (243)
T ss_dssp EEEECTTTCBEE
T ss_pred EEEEECCCCCEE
Confidence 999999887754
No 252
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.22 E-value=4e-05 Score=65.74 Aligned_cols=243 Identities=9% Similarity=0.047 Sum_probs=123.0
Q ss_pred EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCC-ceeeEEEeCCceEEEEecCCcEEEEEcCCCcee-eeecCC
Q psy11885 20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSD-PVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-VIGTHD 97 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~-~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~-~~~~h~ 97 (327)
+..+..+ ..|.+++.++.|..|| .+++......... .+.++.......++.++.+ +..+|. ++... ......
T Consensus 24 ~~~~d~~--g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKN--GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTT--SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccC--CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCC
Confidence 3444443 3467777889999999 7777543332222 2344455445566666555 888885 33221 111112
Q ss_pred ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcE-EEEecC-CCeEEEEeCCCeEEEEECCCCccceeee
Q psy11885 98 QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV-FTMSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRR 175 (327)
Q Consensus 98 ~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~ 175 (327)
.......+. +..+..++.++.|..+|.+ ++.......+... ...... ...+.+++.++.|..+|.. ++......
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe
Confidence 222223333 4578888889999999988 7766655433221 111112 4457788888999999987 44322111
Q ss_pred cccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecC
Q psy11885 176 ESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS 255 (327)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~ 255 (327)
... .....+.... ...+.+++ +... .++. .. .....+.. .. ..+.++...+++... .++.
T Consensus 174 ~~~--~~~~~~~~d~-~g~l~v~t--~~l~--~~d~-~g--~~~~~~~~---~~------~~~~~~~~~~~g~l~-v~t~ 233 (330)
T 3hxj_A 174 TND--AITSAASIGK-DGTIYFGS--DKVY--AINP-DG--TEKWNFYA---GY------WTVTRPAISEDGTIY-VTSL 233 (330)
T ss_dssp CSS--CCCSCCEECT-TCCEEEES--SSEE--EECT-TS--CEEEEECC---SS------CCCSCCEECTTSCEE-EEET
T ss_pred cCC--CceeeeEEcC-CCEEEEEe--CEEE--EECC-CC--cEEEEEcc---CC------cceeceEECCCCeEE-EEcC
Confidence 110 0011122212 23344554 3332 2331 11 11111110 00 135677778887544 4556
Q ss_pred CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEE
Q psy11885 256 DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293 (327)
Q Consensus 256 dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la 293 (327)
++.+..+|. +++.+..+......+.++.+.++|.+.+
T Consensus 234 ~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v 270 (330)
T 3hxj_A 234 DGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF 270 (330)
T ss_dssp TTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE
T ss_pred CCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE
Confidence 777888874 5555554433222234455555555443
No 253
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.21 E-value=0.00069 Score=60.45 Aligned_cols=140 Identities=9% Similarity=0.091 Sum_probs=86.2
Q ss_pred cCCCcEEEEEECCCcEEEEECCCC----eEEEEec-------CCC-ceeeEEE-eCCceEEEEecC------CcEEEEEc
Q psy11885 25 PNSNQFLLASSWDCNVSLYDITNN----NLRLKYA-------HSD-PVLDCCF-QDAVHSFSGGLD------CTLKMFDF 85 (327)
Q Consensus 25 ~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~-------h~~-~v~~~~~-~~~~~~~sgs~D------g~i~vwd~ 85 (327)
++...+++.+..++.|.+.|+.+. ++..... ... ....+.. +++ .++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 654445555667789999999754 4433331 111 1122222 455 55555444 78999998
Q ss_pred CCCcee-eee--cCC-ccEEEEEEeCCCCEEEEEE-------------------CCCeEEEEeCCCCceeeeeeCCC---
Q psy11885 86 NTQTET-VIG--THD-QPIRAVEYSDEVNCILTGS-------------------WDTSVKMWDPRSSRCVGNYTQPD--- 139 (327)
Q Consensus 86 ~~~~~~-~~~--~h~-~~V~~l~~~~~~~~l~sgs-------------------~d~~i~lwdl~~~~~~~~~~~~~--- 139 (327)
++.+.. ... ... ..-..+-|+|+++.+++.. .+.+|.+||+.+++.++++....
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 876543 222 122 2234678899999888885 37899999999988888877631
Q ss_pred cE--EEE--ecCCCeEEEEe------CCCeEEEEEC
Q psy11885 140 KV--FTM--SLCGEKFVVGT------AGRKVCIWDL 165 (327)
Q Consensus 140 ~~--~~~--~~~~~~~~~~~------~d~~v~iwD~ 165 (327)
.. +.+ ++++..++++. .+++|.+|..
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 11 223 56677766665 4567766544
No 254
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.20 E-value=0.0015 Score=54.39 Aligned_cols=155 Identities=5% Similarity=-0.008 Sum_probs=98.2
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC-CceeeEEEe-CCceEEEEec---CCcEEEEEcCCCce
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS-DPVLDCCFQ-DAVHSFSGGL---DCTLKMFDFNTQTE 90 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~-~~v~~~~~~-~~~~~~sgs~---Dg~i~vwd~~~~~~ 90 (327)
.....++++|+++.++++....+.|.+++............. .....+++. ++..++.+.. .+.|..++++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 467899999965555555556789999998764432222222 345778885 3666665554 36788888875443
Q ss_pred eeee-cCCccEEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEEe-CCCeEEEEECCC
Q psy11885 91 TVIG-THDQPIRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGT-AGRKVCIWDLRN 167 (327)
Q Consensus 91 ~~~~-~h~~~V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~iwD~~~ 167 (327)
..+. ..-.....++++++++.|+.+. ..++|..+|+........+........+...+..++++. .++.|.++|..+
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence 3332 2223568899999877776554 568999999976443333333223344455566666654 457899999886
Q ss_pred Ccc
Q psy11885 168 MGY 170 (327)
Q Consensus 168 ~~~ 170 (327)
++.
T Consensus 239 g~~ 241 (267)
T 1npe_A 239 SKE 241 (267)
T ss_dssp TEE
T ss_pred CCc
Confidence 653
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.16 E-value=0.0067 Score=58.85 Aligned_cols=267 Identities=10% Similarity=0.112 Sum_probs=145.8
Q ss_pred eeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe--cCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeee-
Q psy11885 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIG- 94 (327)
Q Consensus 18 I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~- 94 (327)
|.++...++ +. |..+..++-+..||..+++..... .....|.++.......+..|..++-+..||..++....+.
T Consensus 175 i~~i~~d~~-g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQG-DQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEET-TE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCC-CC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeec
Confidence 888888874 34 444666556889998877654321 2334576666544445556665556888998765443221
Q ss_pred c-------CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC--------CCcEEEEecC-CCeEEEEeCCC
Q psy11885 95 T-------HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ--------PDKVFTMSLC-GEKFVVGTAGR 158 (327)
Q Consensus 95 ~-------h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~d~ 158 (327)
. ....|.++...++|.. ..|+.+ .|.+||..+++....... ...+.++..+ ...+.+|+.++
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~ 330 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFG 330 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSS
T ss_pred CCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCC
Confidence 1 1356999988888764 445555 689999877654322111 1234554443 33577888888
Q ss_pred eEEEEECCCCccceeeec---ccce-eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccC-Cee
Q psy11885 159 KVCIWDLRNMGYIMQRRE---SSLK-FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED-GIE 233 (327)
Q Consensus 159 ~v~iwD~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~-~~~ 233 (327)
-|..||..+......... ..+. ....++.... ...+.+++.++.... ++.... ... .+........ ++.
T Consensus 331 Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~lWiGt~~~Gl~~--~~~~~~--~~~-~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 331 GLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKNLWIGTNDGGLNL--YNPITQ--RFT-SYTLQEDESARGIG 404 (795)
T ss_dssp CEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSCEEEEESSSCEEE--ECTTTC--CEE-EECCC------CCS
T ss_pred CeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCCEEEEECCCCeEE--EcCCCC--cEE-EEecCCCCcccCCC
Confidence 899998654332111110 1111 1123333222 234566665544433 332211 110 0000000000 000
Q ss_pred eEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC----cCCcceEEEEECCCCCEEEEE
Q psy11885 234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH----RYDTGITSLCFSYDGNVLAIA 295 (327)
Q Consensus 234 ~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~----~~~~~v~~l~fspdg~~la~~ 295 (327)
...|.++...+++..|-.|+.++.+.+||..+++...... .....|.++...++|++.+.+
T Consensus 405 -~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 405 -SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred -CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence 0147788888888746667777779999987664322111 123468999999999876644
No 256
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.12 E-value=0.0078 Score=58.40 Aligned_cols=291 Identities=9% Similarity=0.078 Sum_probs=161.1
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec--------CCCceeeEEEeCCceEEEEecCCcEEEEEcC
Q psy11885 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA--------HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFN 86 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~ 86 (327)
...|.++...+++ . |..|..+ -|.+||..+++...... ....|.++..-....+..|+.++-|..|+..
T Consensus 262 ~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCC
Confidence 4679999998854 3 4445555 58899988887544321 1235667666555567778888889999876
Q ss_pred CCceeeeec-------CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee---------CCCcEEEEec--CC
Q psy11885 87 TQTETVIGT-------HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT---------QPDKVFTMSL--CG 148 (327)
Q Consensus 87 ~~~~~~~~~-------h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~---------~~~~~~~~~~--~~ 148 (327)
+.....+.. ....|.++...++|+ |-.|+.++.|..||..+++...... ....+.++.. .+
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 554322211 234689999888776 5567888889999987765432211 1233555544 34
Q ss_pred CeEEEEeCCCeEEEEECCCCccceeee-cccce-eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeee
Q psy11885 149 EKFVVGTAGRKVCIWDLRNMGYIMQRR-ESSLK-FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR 226 (327)
Q Consensus 149 ~~~~~~~~d~~v~iwD~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~ 226 (327)
..+.+|+.++-|.+||.++.+...... ...+. ....++...++ ..+.+++..| ..+ ++.... ... .+. ..
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lwigt~~G-l~~--~~~~~~--~~~-~~~-~~ 489 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE-GNLWLGTLSA-LVR--FNPEQR--SFT-TIE-KE 489 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS-SCEEEEESSC-EEE--EETTTT--EEE-ECC-BC
T ss_pred CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC-CCEEEEecCc-eeE--EeCCCC--eEE-Ecc-cc
Confidence 338888888889999987654221111 00011 12233333222 3445555433 332 332211 110 000 00
Q ss_pred eccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC-------cCCcceEEEEECCCCCEEEEEEccc
Q psy11885 227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH-------RYDTGITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 227 ~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~-------~~~~~v~~l~fspdg~~la~~~~~~ 299 (327)
...... ....|.++...+++...+... +.+..||..+++. .+. .....|.++...++|++.+.+.. +
T Consensus 490 ~~~~~~-~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-G 563 (795)
T 4a2l_A 490 KDGTPV-VSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-G 563 (795)
T ss_dssp TTCCBC-CCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-C
T ss_pred cccccc-CCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-C
Confidence 000000 012477888888988777554 4588888766554 221 12346899999999986654432 3
Q ss_pred cccCC----------CCCCCCCCcEEEEEccccc
Q psy11885 300 YELET----------PPDPIPPNNIFIRHVTDQE 323 (327)
Q Consensus 300 ~~~~~----------~~~~~~~~~~~~~~~~~~~ 323 (327)
+.+.- ..+-++.+.|+.+...++|
T Consensus 564 l~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g 597 (795)
T 4a2l_A 564 FYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFG 597 (795)
T ss_dssp EEEEETTTTEEEEECGGGTCSCSCEEEEEECTTS
T ss_pred ceeECCCCCcEEEeCCCCCCchhheEEEEECCCC
Confidence 33221 1233566666655544443
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.06 E-value=0.00061 Score=64.85 Aligned_cols=141 Identities=13% Similarity=0.071 Sum_probs=88.6
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCCCc-----------e-eeEEEeCCceEEEEecCCcEEEEEcCCCceeee-ec
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDP-----------V-LDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVI-GT 95 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~-----------v-~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~-~~ 95 (327)
..|++++.++.|.-+|..+|+.+-.+..... + ...++ .+..++.++.|+.|..+|..+++.... ..
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 3567777889999999999987654432211 1 11222 355788888999999999998876432 11
Q ss_pred C----CccEEE-EEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeCC----C---------------------
Q psy11885 96 H----DQPIRA-VEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQP----D--------------------- 139 (327)
Q Consensus 96 h----~~~V~~-l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~~----~--------------------- 139 (327)
. ...+.+ -.+. + ..++.+.. ++.|..+|.++++.++.+... .
T Consensus 146 ~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 146 TDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp SCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 1 011110 0111 3 35555533 589999999999998876521 1
Q ss_pred ---------cEEEEecCCCeEEEEeCCC-------------------eEEEEECCCCccce
Q psy11885 140 ---------KVFTMSLCGEKFVVGTAGR-------------------KVCIWDLRNMGYIM 172 (327)
Q Consensus 140 ---------~~~~~~~~~~~~~~~~~d~-------------------~v~iwD~~~~~~~~ 172 (327)
...++++..+.+++++.++ .|.-+|.++++..-
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W 284 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAW 284 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceee
Confidence 0134555567777777665 48999999887643
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.05 E-value=0.0016 Score=60.73 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=66.2
Q ss_pred EEEEEEC-CCcEEEEEC-CCCeEEEEecCCCc--e----------eeEEEeCCceEEEEecCCcEEEEEcCCCceeee--
Q psy11885 30 FLLASSW-DCNVSLYDI-TNNNLRLKYAHSDP--V----------LDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVI-- 93 (327)
Q Consensus 30 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~h~~~--v----------~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~-- 93 (327)
.+.+++. ++.|.-+|. .+|+.+-.+..... + ...++ .+..++.++.|+.+..+|..+++....
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 142 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDAKTGKINWEVE 142 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEECCCCCEEEEec
Confidence 4566666 889999999 88886544432211 0 11222 356788888899999999988876432
Q ss_pred -ecCC--ccEEE-EEEeCCCCEEEEEEC------CCeEEEEeCCCCceeeeeeC
Q psy11885 94 -GTHD--QPIRA-VEYSDEVNCILTGSW------DTSVKMWDPRSSRCVGNYTQ 137 (327)
Q Consensus 94 -~~h~--~~V~~-l~~~~~~~~l~sgs~------d~~i~lwdl~~~~~~~~~~~ 137 (327)
..+. ..+.+ .... + ..++.++. ++.|..+|.++++.++.+..
T Consensus 143 ~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 143 VCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp CCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 1111 01111 1111 3 45666654 79999999999998877653
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=0.012 Score=57.02 Aligned_cols=291 Identities=11% Similarity=0.106 Sum_probs=153.2
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec--------CCCceeeEEEeCCceEEEEecCCcEEEEEcC
Q psy11885 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA--------HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFN 86 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~ 86 (327)
...|.+|...+++ . |..|..+ -+.+||..+++...... ....|.++.......+..|...+-|.++|..
T Consensus 210 ~~~i~~i~~d~~g-~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 210 GNDVRCIYKDTNG-N-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQ 286 (781)
T ss_dssp CSSEEEEEECTTC-C-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETT
T ss_pred CCceeEEEEcCCC-C-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCC
Confidence 3578999888754 3 4444544 68899988776543221 1234666666445566667765678888877
Q ss_pred CCceeeee---------------cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee----------CCCcE
Q psy11885 87 TQTETVIG---------------THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT----------QPDKV 141 (327)
Q Consensus 87 ~~~~~~~~---------------~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~----------~~~~~ 141 (327)
+.....+. -....|.++...++|. |-.|+.++-|..++..++....... ....+
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 65422111 1235689998888776 5667777889999987654221110 12235
Q ss_pred EEEecCC-CeEEEEeCCCeEEEEECCCCccceeeecccce-eeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccce
Q psy11885 142 FTMSLCG-EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLK-FQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK 219 (327)
Q Consensus 142 ~~~~~~~-~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 219 (327)
.++..+. ..+.+|+.++-|..||..+...........+. ....++...+ ...+.+++..+.. ..++.... ...
T Consensus 366 ~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWigt~~~Gl--~~~~~~~~--~~~ 440 (781)
T 3v9f_A 366 SSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWFGTYLGNI--SYYNTRLK--KFQ 440 (781)
T ss_dssp EEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEEEEETTEEE--EEECSSSC--EEE
T ss_pred EEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEEEeccCCE--EEEcCCCC--cEE
Confidence 5555443 45778887777888997653221110000111 1122332222 2345555543332 22332211 010
Q ss_pred eeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCc-----CCcceEEEEECCCCCEEEE
Q psy11885 220 YAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHR-----YDTGITSLCFSYDGNVLAI 294 (327)
Q Consensus 220 ~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~-----~~~~v~~l~fspdg~~la~ 294 (327)
.+. .. .. ....|.++...+++.+.+.. . +.+..+|..+++....... ....|.++...++|++.+.
T Consensus 441 -~~~---~~--~~-~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 441 -IIE---LE--KN-ELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp -ECC---ST--TT-CCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred -Eec---cC--CC-CCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 000 00 00 01246788888888766544 3 5688898766543221111 1346899999999987765
Q ss_pred EEccccccCCC----------CCCCCCCcEEEEEccccc
Q psy11885 295 ACSYNYELETP----------PDPIPPNNIFIRHVTDQE 323 (327)
Q Consensus 295 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 323 (327)
+...++.+..+ +..++.+.|+-+...+++
T Consensus 512 t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 550 (781)
T 3v9f_A 512 TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKG 550 (781)
T ss_dssp ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTS
T ss_pred EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCC
Confidence 43233333221 234556666655544443
No 260
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.95 E-value=0.00023 Score=65.71 Aligned_cols=195 Identities=9% Similarity=0.064 Sum_probs=114.7
Q ss_pred CCceEEEEe-cCCcEEEEEcCCCcee-eeec-CCccEEEEEE-e-CCCCEEEEEE------------------CCCeEEE
Q psy11885 67 DAVHSFSGG-LDCTLKMFDFNTQTET-VIGT-HDQPIRAVEY-S-DEVNCILTGS------------------WDTSVKM 123 (327)
Q Consensus 67 ~~~~~~sgs-~Dg~i~vwd~~~~~~~-~~~~-h~~~V~~l~~-~-~~~~~l~sgs------------------~d~~i~l 123 (327)
++.+++... .+++|.+-|+.+.+.. .+.- .......+++ . |++++++.++ +++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 456666544 4567999999887643 2221 1234778887 4 8999999885 3467999
Q ss_pred EeCCCCceeeeeeCCC--cEEEEecCCCeEEEEeCCC---------------eEEEEECCCCccceeeecccceeeeEEe
Q psy11885 124 WDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVGTAGR---------------KVCIWDLRNMGYIMQRRESSLKFQTRCI 186 (327)
Q Consensus 124 wdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~---------------~v~iwD~~~~~~~~~~~~~~~~~~~~~~ 186 (327)
.|..+.+..+++.... .-..++++|..+++.+.+. .|.+.|.....
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~----------------- 242 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE----------------- 242 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-----------------
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee-----------------
Confidence 9999998888776422 2456778888877766442 35555543211
Q ss_pred EEeeCCCceEEEeecCeEEEEEccCCcccccc-eeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec-CCCeEEEEeC
Q psy11885 187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKM-KYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG-SDGYVNIWDG 264 (327)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs-~dg~i~iWd~ 264 (327)
.+.++++...+ +.+.+ .|........ ...+..- ....++.++|||+++++++ .+.+|.++|.
T Consensus 243 ~~v~~Gk~~~i----~~V~V--ID~~~~~~~~~~~~Ipvg----------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~ 306 (595)
T 1fwx_A 243 KAIAAGDYQEL----NGVKV--VDGRKEASSLFTRYIPIA----------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDV 306 (595)
T ss_dssp HHHHHTCSEEE----TTEEE--EECSGGGCCSSEEEEEEE----------SSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred EeccCCCeeEE----CcEEE--EeCcccCCceeEEEEecC----------CCceEEEEcCCCCEEEEeCCCCCeEEEEEC
Confidence 01122222111 22333 4433311111 1111100 0245799999999876655 5789999998
Q ss_pred CCce------------eeeecCcCCcceEEEEECCCCCEEEEEE
Q psy11885 265 FNKK------------RLCQFHRYDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 265 ~~~~------------~~~~~~~~~~~v~~l~fspdg~~la~~~ 296 (327)
.+.+ ...++... .+-..++|+||| .+-++.
T Consensus 307 ~~~~~~~~~~l~~~~~v~~~v~vG-~gP~h~aF~~dG-~aY~t~ 348 (595)
T 1fwx_A 307 TRFDAVFYENADPRSAVVAEPELG-LGPLHTAFDGRG-NAYTSL 348 (595)
T ss_dssp GGHHHHHHSCCCGGGGEEECCBCC-SCEEEEEECTTS-EEEEEE
T ss_pred cccccccccccCcccceEEEcCCC-CCcceEEECCCC-eEEEEE
Confidence 8653 23333322 345889999999 554544
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.93 E-value=0.0035 Score=58.67 Aligned_cols=106 Identities=8% Similarity=0.000 Sum_probs=66.6
Q ss_pred EEEEEEC-CCcEEEEEC-CCCeEEEEecCCCc------------eeeEEEe-CCce----EEEEecCCcEEEEEcCCCce
Q psy11885 30 FLLASSW-DCNVSLYDI-TNNNLRLKYAHSDP------------VLDCCFQ-DAVH----SFSGGLDCTLKMFDFNTQTE 90 (327)
Q Consensus 30 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~h~~~------------v~~~~~~-~~~~----~~sgs~Dg~i~vwd~~~~~~ 90 (327)
.|.+++. ++.|.-+|. .+|+.+-.+..... ...+++. .+.. ++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666676 889999999 88886644432221 1123442 3444 88888999999999988876
Q ss_pred eeee---cCC--ccEEE-EEEeCCCCEEEEEE------CCCeEEEEeCCCCceeeeeeC
Q psy11885 91 TVIG---THD--QPIRA-VEYSDEVNCILTGS------WDTSVKMWDPRSSRCVGNYTQ 137 (327)
Q Consensus 91 ~~~~---~h~--~~V~~-l~~~~~~~~l~sgs------~d~~i~lwdl~~~~~~~~~~~ 137 (327)
.... .+. ..+.+ -.+. + ..++.++ .++.|+.+|.++++.++.+..
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 4321 110 01111 1111 3 3555554 489999999999998877653
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.91 E-value=0.0048 Score=59.56 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=87.6
Q ss_pred CeeEEEEe-cCCCcEEEEEECCC----cEEEEECCCC-eEEEEecCCCceeeEEEe-CCceEEEEecC-----CcEEEEE
Q psy11885 17 GITAVKFA-PNSNQFLLASSWDC----NVSLYDITNN-NLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD-----CTLKMFD 84 (327)
Q Consensus 17 ~I~~i~fs-~~~~~~l~s~~~d~----~i~iwd~~~~-~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D-----g~i~vwd 84 (327)
.+...+|| |++..++.+.+.+| .|+++|+.++ +.... .-......++|+ ++..++....| ..|.+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57789999 97543443444433 4999999988 62110 001112356785 67777766655 3577788
Q ss_pred cCCCce---eeee-cCCccEEEEEEeCCCCEEEEEEC---CCeEEEEeCCCCc-ee--eeeeC--CCcEEEEe-cCCCeE
Q psy11885 85 FNTQTE---TVIG-THDQPIRAVEYSDEVNCILTGSW---DTSVKMWDPRSSR-CV--GNYTQ--PDKVFTMS-LCGEKF 151 (327)
Q Consensus 85 ~~~~~~---~~~~-~h~~~V~~l~~~~~~~~l~sgs~---d~~i~lwdl~~~~-~~--~~~~~--~~~~~~~~-~~~~~~ 151 (327)
+.++.. .++. ........+.|+|||++|+..+. ...|.++|+.+++ .. ..+.. ....+... ..++.|
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l 333 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL 333 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence 877542 2222 23344667899999998876552 4578889987752 11 22221 12233443 337766
Q ss_pred EEEeCC-----CeEEEEECCC
Q psy11885 152 VVGTAG-----RKVCIWDLRN 167 (327)
Q Consensus 152 ~~~~~d-----~~v~iwD~~~ 167 (327)
+..+.. ..|..+|+.+
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTS
T ss_pred EEEeCCCCCCCcEEEEEcCCC
Confidence 665443 2677778764
No 263
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.76 E-value=0.012 Score=48.61 Aligned_cols=207 Identities=9% Similarity=0.103 Sum_probs=114.8
Q ss_pred eecCCccEEEEEEeCCCCEEEE-EECCCeEEEEeCCCCceeeeeeCC--CcEEEEecC-CCeEEEEe-CCCeEEEEECCC
Q psy11885 93 IGTHDQPIRAVEYSDEVNCILT-GSWDTSVKMWDPRSSRCVGNYTQP--DKVFTMSLC-GEKFVVGT-AGRKVCIWDLRN 167 (327)
Q Consensus 93 ~~~h~~~V~~l~~~~~~~~l~s-gs~d~~i~lwdl~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~-~d~~v~iwD~~~ 167 (327)
+.+-...+..++|+|+++.|++ ...++.|...|+. ++.+..+... ...-.+.+. +..++++. .++.+.++++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 3445567999999998776654 6778899999987 8877776432 223333332 23444444 456788888765
Q ss_pred Cccceeeecc--cc-----eeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeE
Q psy11885 168 MGYIMQRRES--SL-----KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 240 (327)
Q Consensus 168 ~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~ 240 (327)
...+...... .+ ......+++.+.++.+.++.......++.++.......+.. ........ . .....+.+
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i-~~~~~~~~-~-~~~~d~S~ 177 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHI-SKDKALQR-Q-FTLDDVSG 177 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEE-EECHHHHH-T-CCSSCCCE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceee-ecchhhcc-c-cccCCcee
Confidence 4321111111 11 00124567777777777766665556655551110000100 00000000 0 00113578
Q ss_pred EEEecCCC-eEEEecCCCeEEEEeCCCceeeeec--Cc-C------CcceEEEEECCCCCEEEEEEccccccCCCCCCCC
Q psy11885 241 ISFHQEYN-TFATGGSDGYVNIWDGFNKKRLCQF--HR-Y------DTGITSLCFSYDGNVLAIACSYNYELETPPDPIP 310 (327)
Q Consensus 241 v~~spd~~-~lasgs~dg~i~iWd~~~~~~~~~~--~~-~------~~~v~~l~fspdg~~la~~~~~~~~~~~~~~~~~ 310 (327)
++++|... +++....++.+.++|.. ++.+..+ .. . -..--.|+|.|+|+.++++ +
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs--------------E 242 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS--------------E 242 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE--------------T
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc--------------C
Confidence 99999655 45566667889999965 4544332 21 1 0123679999999977765 6
Q ss_pred CCcEEEEE
Q psy11885 311 PNNIFIRH 318 (327)
Q Consensus 311 ~~~~~~~~ 318 (327)
+|.+|.|.
T Consensus 243 ~n~~y~f~ 250 (255)
T 3qqz_A 243 PNRFYRFT 250 (255)
T ss_dssp TTEEEEEE
T ss_pred CceEEEEE
Confidence 67777763
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.043 Score=53.02 Aligned_cols=270 Identities=11% Similarity=0.063 Sum_probs=144.6
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec---------------CCCceeeEEEeCCceEEEEecCCc
Q psy11885 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA---------------HSDPVLDCCFQDAVHSFSGGLDCT 79 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~~sgs~Dg~ 79 (327)
...|.++...+++ .|..|...+-|.++|..+++...... ....|.++..-....+..|..++-
T Consensus 257 ~~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTS--EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSC
T ss_pred CceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCe
Confidence 4679999988743 35556665668889988766322111 123566666544456777877888
Q ss_pred EEEEEcCCCceeeee-------c---CCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee----CCCcEEEEe
Q psy11885 80 LKMFDFNTQTETVIG-------T---HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT----QPDKVFTMS 145 (327)
Q Consensus 80 i~vwd~~~~~~~~~~-------~---h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~----~~~~~~~~~ 145 (327)
|..++..+.....+. . ....|.++...++|+ |..|+.++.|..||..+++...... ....+.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 999987765433221 0 235689998887775 5567767779999986543322111 123455555
Q ss_pred cC-CCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeee
Q psy11885 146 LC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224 (327)
Q Consensus 146 ~~-~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 224 (327)
.+ ...+.+|+.++-+..+|.++.+...............++...+ ...+.+++. +.... ++.... .... +.
T Consensus 414 ~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~-~Gl~~--~~~~~~--~~~~-~~- 485 (781)
T 3v9f_A 414 KDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTH-AGVFV--IDLASK--KVIH-HY- 485 (781)
T ss_dssp ECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEET-TEEEE--EESSSS--SCCE-EE-
T ss_pred ECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEEC-CceEE--EeCCCC--eEEe-cc-
Confidence 44 4457778887788889886543211110000011123332222 234455554 33332 332211 1100 00
Q ss_pred eeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC---c-CCcceEEEEECCCCCEEEEEEcccc
Q psy11885 225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH---R-YDTGITSLCFSYDGNVLAIACSYNY 300 (327)
Q Consensus 225 h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~---~-~~~~v~~l~fspdg~~la~~~~~~~ 300 (327)
....... ....|.++...++|.+.+.. .++-+..||..+++. ..+. + ....|.++...++|++.+.+ ..++
T Consensus 486 -~~~~~~~-~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Gl 560 (781)
T 3v9f_A 486 -DTSNSQL-LENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGL 560 (781)
T ss_dssp -CTTTSSC-SCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEE
T ss_pred -cCccccc-ccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCc
Confidence 0000000 01247788888888776654 333477788765432 2222 1 13468999999999876544 3444
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.50 E-value=0.0049 Score=57.55 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=41.4
Q ss_pred CCeEEEEeCCCCceeeeeeCCCcE--EEEecCCCeEEEEeCCCeEEEEECCCCccce
Q psy11885 118 DTSVKMWDPRSSRCVGNYTQPDKV--FTMSLCGEKFVVGTAGRKVCIWDLRNMGYIM 172 (327)
Q Consensus 118 d~~i~lwdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~ 172 (327)
++.|..||+.+++.+++....... ..+...+..+++++.|+.++.||.++++.+-
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 688999999999988876543221 1223346778889999999999999987653
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.49 E-value=0.017 Score=54.70 Aligned_cols=107 Identities=10% Similarity=0.089 Sum_probs=66.3
Q ss_pred eEEEe--CCceEEEEecCC-----------cEEEEEcCCCceee---ee-cCCccEEEEEEeCCCCEEEEEEC-CCeEEE
Q psy11885 62 DCCFQ--DAVHSFSGGLDC-----------TLKMFDFNTQTETV---IG-THDQPIRAVEYSDEVNCILTGSW-DTSVKM 123 (327)
Q Consensus 62 ~~~~~--~~~~~~sgs~Dg-----------~i~vwd~~~~~~~~---~~-~h~~~V~~l~~~~~~~~l~sgs~-d~~i~l 123 (327)
.+++. ++..++.|+.+. .+.+||..++.-.. +. .+.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 34443 666777777543 57889988765322 11 23333345677789999999884 568999
Q ss_pred EeCCCCceeeeeeCC---CcEEEEe-cCCCeEEEEe-CC-----CeEEEEECCCC
Q psy11885 124 WDPRSSRCVGNYTQP---DKVFTMS-LCGEKFVVGT-AG-----RKVCIWDLRNM 168 (327)
Q Consensus 124 wdl~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~-~d-----~~v~iwD~~~~ 168 (327)
||+.+++....-..+ ....... .++..++.|+ .+ ..+.+||..+.
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 999877644321111 1122233 3677777777 33 57999998764
No 267
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=0.061 Score=48.12 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=91.1
Q ss_pred CCeeEEEEec-CCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecC-C----cEEEEEcCCC
Q psy11885 16 DGITAVKFAP-NSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLD-C----TLKMFDFNTQ 88 (327)
Q Consensus 16 ~~I~~i~fs~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~D-g----~i~vwd~~~~ 88 (327)
.....|+|+| +++ .|.++...+.|+.+|..++++............+++. ++..++.+... + .+...+.+..
T Consensus 137 ~~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp SCCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 3557899998 344 4555554589999999888766555444456788885 66656665542 2 2333343322
Q ss_pred ce--eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeeeeCC----CcEEEEecCCCeEEEE-eCCCeE
Q psy11885 89 TE--TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNYTQP----DKVFTMSLCGEKFVVG-TAGRKV 160 (327)
Q Consensus 89 ~~--~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~d~~v 160 (327)
.. ..+.. ......++++| ++..+++-...++|..+|..++......... ...+++++.++.++++ ...+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 11 12222 12346788999 6666666667789999999876542222221 2346778888855554 566789
Q ss_pred EEEECC
Q psy11885 161 CIWDLR 166 (327)
Q Consensus 161 ~iwD~~ 166 (327)
..+|..
T Consensus 295 ~~~~~d 300 (430)
T 3tc9_A 295 LRSDYD 300 (430)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 998765
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.076 Score=47.47 Aligned_cols=147 Identities=10% Similarity=0.035 Sum_probs=81.9
Q ss_pred eeEEEe--CCceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECC-C----eEEEEeCCCCcee-
Q psy11885 61 LDCCFQ--DAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWD-T----SVKMWDPRSSRCV- 132 (327)
Q Consensus 61 ~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d-~----~i~lwdl~~~~~~- 132 (327)
..+++. +...++.+...+.|+.+|++++....+.........|+++++++.|+.+... + .+..++. .+...
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~ 218 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKV 218 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCS
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceee
Confidence 456665 3566776665578889998876654444444557899999999977666542 2 3333443 33221
Q ss_pred ----eeeeCCCcEEEEec-CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEE-eecCeEEE
Q psy11885 133 ----GNYTQPDKVFTMSL-CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS-SIEGRAAV 206 (327)
Q Consensus 133 ----~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 206 (327)
..+..+ ..+++++ .+..+++-..++.|..+|..+............ ..++.+++.++++.+.++ .....+..
T Consensus 219 ~~~l~~~~~p-~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~-~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 219 ITELTKGQNC-NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS-GWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEEEECSSC-CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS-SCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeeccCCCc-eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC-CcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 122222 2345666 455455555678899999875432111111111 124567888887744444 33444444
Q ss_pred EEcc
Q psy11885 207 EYLD 210 (327)
Q Consensus 207 ~~~~ 210 (327)
..++
T Consensus 297 ~~~d 300 (430)
T 3tc9_A 297 SDYD 300 (430)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 3333
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.31 E-value=0.036 Score=47.21 Aligned_cols=148 Identities=10% Similarity=0.043 Sum_probs=82.3
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEec--C---CCceeeEEEeC-CceEEEEec--------------
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA--H---SDPVLDCCFQD-AVHSFSGGL-------------- 76 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--h---~~~v~~~~~~~-~~~~~sgs~-------------- 76 (327)
.+..+++.++++. |.++...+.|..+|..+++...... . ......+++.. ...++.+..
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 5788999973344 4555555668889987665332221 1 12345667643 334443332
Q ss_pred ----CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCc-----eeeeeeCCCcEEEEec
Q psy11885 77 ----DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSR-----CVGNYTQPDKVFTMSL 146 (327)
Q Consensus 77 ----Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~-----~~~~~~~~~~~~~~~~ 146 (327)
++.|..+|..++....+...-.....++++++++.|+.+ +..++|..|++.... .+..+.. ..-+.++.
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~ 238 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA 238 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence 256777877655433222111234678999999876655 556899999987521 1111111 12244555
Q ss_pred CCCeEEEEeC----------CCeEEEEECC
Q psy11885 147 CGEKFVVGTA----------GRKVCIWDLR 166 (327)
Q Consensus 147 ~~~~~~~~~~----------d~~v~iwD~~ 166 (327)
.|+.+++... .+.|..+|..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC
Confidence 6664444333 3567777754
No 270
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.16 E-value=0.093 Score=44.71 Aligned_cols=204 Identities=11% Similarity=0.168 Sum_probs=116.3
Q ss_pred EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCC--ceeeeecC-
Q psy11885 20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQ--TETVIGTH- 96 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~--~~~~~~~h- 96 (327)
+.-.+|. .+.+|.-. ..+++|+|+++.+..........|.-=.|-+...++--. +..|..|+++.. ..+.+..|
T Consensus 71 sAIMnP~-~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 71 SAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEEECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeeCCC-ccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 4556884 45666554 789999999998866555555677666675555554333 568999999753 23445444
Q ss_pred ---CccEEEEEEeCCCCEEEEEE-------CCCeEEEEeCCCCceeeeeeCCCcEE-EEecCCC-----eEEEEeC---C
Q psy11885 97 ---DQPIRAVEYSDEVNCILTGS-------WDTSVKMWDPRSSRCVGNYTQPDKVF-TMSLCGE-----KFVVGTA---G 157 (327)
Q Consensus 97 ---~~~V~~l~~~~~~~~l~sgs-------~d~~i~lwdl~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~---d 157 (327)
...|.....+++.++++..+ -.|.+++|..+.+. -+.++++...+ .+...|+ .++.+.. .
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 34677777788888875432 23677899876543 33444443322 2222222 1222211 2
Q ss_pred CeEEEEECCCCccceeeecccceeeeEEeE-EeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885 158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIK-CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236 (327)
Q Consensus 158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 236 (327)
++++|-++.... ...-+++.+.+. ++|.. ....+
T Consensus 227 ~kLhIiEi~~~~------~~~~~f~kk~vdi~fppe---------------------------------------a~~DF 261 (365)
T 2xzh_A 227 GKLHIIEVGTPP------TGNQPFPKKAVDVFFPPE---------------------------------------AQNDF 261 (365)
T ss_dssp EEEEEEECSSCC------TTCCCCCCEEEEECCCTT---------------------------------------CTTCC
T ss_pred cEEEEEEcCCCC------CCCCCcccccceeeCCcc---------------------------------------ccCCc
Confidence 466776664320 000011111111 01100 00012
Q ss_pred EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF 273 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~ 273 (327)
|| ++..|+....+..-..-|.|.+||++++..+..-
T Consensus 262 PV-amqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 262 PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eE-EEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 33 4677888888888888999999999999877654
No 271
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.12 E-value=0.11 Score=44.79 Aligned_cols=136 Identities=7% Similarity=0.152 Sum_probs=82.4
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-----CCc---eEEEEec---CCcEEEEEcC--CCceeeeec
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-----DAV---HSFSGGL---DCTLKMFDFN--TQTETVIGT 95 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-----~~~---~~~sgs~---Dg~i~vwd~~--~~~~~~~~~ 95 (327)
.+++....++-+.+||+ +|+....... +.++.+..- .+. .+++... +++|++|+++ ++....+..
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 45666667788999999 5554443332 445544431 222 2344443 5789999874 333222211
Q ss_pred ------CC-ccEEEEEE--eCC-CC-EEEEEECCCeEEEEeCC-------CCceeeeeeCCCcEEEEec--CCCeEEEEe
Q psy11885 96 ------HD-QPIRAVEY--SDE-VN-CILTGSWDTSVKMWDPR-------SSRCVGNYTQPDKVFTMSL--CGEKFVVGT 155 (327)
Q Consensus 96 ------h~-~~V~~l~~--~~~-~~-~l~sgs~d~~i~lwdl~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 155 (327)
.. ..+..+|+ ++. +. +++....++.+..|++. +++.++++........+.. ....++++-
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~e 198 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAE 198 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEec
Confidence 11 44566777 664 43 57888889999999882 3355677776655544433 456888888
Q ss_pred CCCeEEEEECC
Q psy11885 156 AGRKVCIWDLR 166 (327)
Q Consensus 156 ~d~~v~iwD~~ 166 (327)
++.-|-.+|.+
T Consensus 199 Ed~GIw~~da~ 209 (355)
T 3amr_A 199 EDEAIWKFSAE 209 (355)
T ss_dssp TTTEEEEEECS
T ss_pred ccceEEEEeCC
Confidence 88766666654
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.09 E-value=0.091 Score=43.28 Aligned_cols=151 Identities=10% Similarity=0.091 Sum_probs=89.7
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC--CceeeEEEe-CCceEEEEecCCcEEEEEcCCCce--
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS--DPVLDCCFQ-DAVHSFSGGLDCTLKMFDFNTQTE-- 90 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~--~~v~~~~~~-~~~~~~sgs~Dg~i~vwd~~~~~~-- 90 (327)
+++..++|+|+++.++++...++.|...|.. +++....... ...-.+++. ++..+++.-.++.+.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 5799999999766666777788899999998 6654433221 234455664 444445544567788887765431
Q ss_pred --eee--e----cCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCC---CceeeeeeC----------CCcEEEEecC-C
Q psy11885 91 --TVI--G----THDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS---SRCVGNYTQ----------PDKVFTMSLC-G 148 (327)
Q Consensus 91 --~~~--~----~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~---~~~~~~~~~----------~~~~~~~~~~-~ 148 (327)
... . ..+...-.|+|+++++.|+++.......+|.... ...+..... .-..+++.+. +
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg 185 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN 185 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence 111 1 1234568999999998888877655555555431 111111110 1123445554 3
Q ss_pred CeEEEEeCCCeEEEEECCC
Q psy11885 149 EKFVVGTAGRKVCIWDLRN 167 (327)
Q Consensus 149 ~~~~~~~~d~~v~iwD~~~ 167 (327)
..++.+..++.+-.+|...
T Consensus 186 ~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 186 TLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp EEEEEETTTTEEEEECTTC
T ss_pred eEEEEECCCCeEEEEcCCC
Confidence 3455556667788888764
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.04 E-value=0.15 Score=44.81 Aligned_cols=206 Identities=7% Similarity=-0.028 Sum_probs=106.7
Q ss_pred CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE-EEECCCeEEEEeCCCCceeeeeeC---CCcEEEEecCCCeEE
Q psy11885 77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSRCVGNYTQ---PDKVFTMSLCGEKFV 152 (327)
Q Consensus 77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-sgs~d~~i~lwdl~~~~~~~~~~~---~~~~~~~~~~~~~~~ 152 (327)
...|+..++.......+......+..++|++..+.|+ +-...+.|+.+++..+.....+.. ...-+++.+.+..++
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY 174 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY 174 (386)
T ss_dssp BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEE
T ss_pred CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEE
Confidence 4678888887665443333334578899997666555 445678999999876543222221 112356665555544
Q ss_pred -EEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCC
Q psy11885 153 -VGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG 231 (327)
Q Consensus 153 -~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~ 231 (327)
+-...+.|.+.++...... ......+ ..++.+++.|....+..+.......|+.++.......... ..+
T Consensus 175 ~~d~~~~~I~~~~~dg~~~~-~l~~~~l-~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~~~ 244 (386)
T 3v65_B 175 WTDSGTSRIEVANLDGAHRK-VLLWQSL-EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------DTH 244 (386)
T ss_dssp EEETTTTEEEECBTTSCSCE-EEECSSC-SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--------CSS
T ss_pred EEcCCCCeEEEEeCCCCceE-EeecCCC-CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE--------ECC
Confidence 4455678888887643211 1111111 1245666666554444433322133333332211111000 001
Q ss_pred eeeEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 232 IEKIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 232 ~~~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
....+.++++|++..|..+ +..+.|..+|+....+...+.........|++. .+ .|..+..
T Consensus 245 ---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~ 306 (386)
T 3v65_B 245 ---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDW 306 (386)
T ss_dssp ---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEET
T ss_pred ---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeC
Confidence 1135789999877666544 456789999976433222222122234677873 33 4444433
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.93 E-value=0.11 Score=49.99 Aligned_cols=113 Identities=11% Similarity=0.055 Sum_probs=65.3
Q ss_pred cEEEEEEe-CCCCEEEEEE-CC----CeEEEEeCCCC-ceeee-eeCCCcEEEEecCCCeEEEEeCC-----CeEEEEEC
Q psy11885 99 PIRAVEYS-DEVNCILTGS-WD----TSVKMWDPRSS-RCVGN-YTQPDKVFTMSLCGEKFVVGTAG-----RKVCIWDL 165 (327)
Q Consensus 99 ~V~~l~~~-~~~~~l~sgs-~d----~~i~lwdl~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~d-----~~v~iwD~ 165 (327)
.+....|| |||++|+-+. .+ .+|+++|+.++ +.+.. +........++++++.|+....+ ..|.++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 57889999 9999887443 33 25999999988 63321 22212235677788887776654 26888888
Q ss_pred CCCccc--eeeecccceeeeEEeEEeeCCCceEEEeec-CeEEEEEccCC
Q psy11885 166 RNMGYI--MQRRESSLKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTG 212 (327)
Q Consensus 166 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 212 (327)
.+.... .......... .....++++++.++..+.. ....++.++..
T Consensus 255 gt~~~~~~lv~~~~~~~~-~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLF-SAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp TSCGGGCEEEEECCCTTC-EEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred CCCchhcEEEEecCCCce-EEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 764311 1000011111 2345677777766655433 34556665543
No 275
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.93 E-value=0.16 Score=43.40 Aligned_cols=148 Identities=5% Similarity=0.019 Sum_probs=94.7
Q ss_pred EEEEecCCCcEEEEEECCCcEEEEECCCCeEE-EEecC-----CC--ceeeEEE----eCCceEEEEe------------
Q psy11885 20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLR-LKYAH-----SD--PVLDCCF----QDAVHSFSGG------------ 75 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~h-----~~--~v~~~~~----~~~~~~~sgs------------ 75 (327)
+++|++..+.++++.-..++|..||..++... ..... .. .+..+.+ .++..++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 68999865555555447899999999866432 22222 11 2456777 3433333322
Q ss_pred -cCCcEEEEEcC---CCceee---eecC----------C-ccEEEEEEeCCCCEEEEEECC-CeEEEEeCCCCceeeee-
Q psy11885 76 -LDCTLKMFDFN---TQTETV---IGTH----------D-QPIRAVEYSDEVNCILTGSWD-TSVKMWDPRSSRCVGNY- 135 (327)
Q Consensus 76 -~Dg~i~vwd~~---~~~~~~---~~~h----------~-~~V~~l~~~~~~~~l~sgs~d-~~i~lwdl~~~~~~~~~- 135 (327)
.+..+..+|+. +++... +... . .....++..++|+..++++.- +.|...+.........+
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~ 176 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW 176 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence 15778899998 554432 1111 1 247899999999999999988 88888886543222111
Q ss_pred eCC-------CcEEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885 136 TQP-------DKVFTMSLCGEKFVVGTAGRKVCIWDLRN 167 (327)
Q Consensus 136 ~~~-------~~~~~~~~~~~~~~~~~~d~~v~iwD~~~ 167 (327)
..+ -.-+.+.+++..|++...++.+..+|++.
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 111 12467788898888887799999999884
No 276
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.92 E-value=0.43 Score=48.22 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=99.3
Q ss_pred CCCeeEEEEecCC-----CcEEEEEEC-CCcEEEEECCCCeEEEEecC--CCceeeEEE---eCCceEEEEecCCcEEEE
Q psy11885 15 EDGITAVKFAPNS-----NQFLLASSW-DCNVSLYDITNNNLRLKYAH--SDPVLDCCF---QDAVHSFSGGLDCTLKMF 83 (327)
Q Consensus 15 ~~~I~~i~fs~~~-----~~~l~s~~~-d~~i~iwd~~~~~~~~~~~h--~~~v~~~~~---~~~~~~~sgs~Dg~i~vw 83 (327)
+++|.|+++.|.. ..++++|.. |++|+|+++.+-+......- .....++++ ....+++.|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4579999998642 368999997 99999999987664433332 223445544 234577888889998776
Q ss_pred EcCC--Cce-----eeeecCCccEEEEEEeCCCCE-EEEEECCCeEEEEeCCCCceee-eeeCCC--cEEEEec--CCCe
Q psy11885 84 DFNT--QTE-----TVIGTHDQPIRAVEYSDEVNC-ILTGSWDTSVKMWDPRSSRCVG-NYTQPD--KVFTMSL--CGEK 150 (327)
Q Consensus 84 d~~~--~~~-----~~~~~h~~~V~~l~~~~~~~~-l~sgs~d~~i~lwdl~~~~~~~-~~~~~~--~~~~~~~--~~~~ 150 (327)
.++. +.. ..++ ..++.-..+...+.. ++..+ +....++.-+ ++... .+.... ....+.. +++.
T Consensus 633 ~~d~~tg~l~d~r~~~LG--~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g 708 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG--TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDS 708 (1158)
T ss_dssp EECTTTCCEEEEEEEECC--SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTE
T ss_pred EEcCCCCccccceeEEcC--CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCc
Confidence 6543 221 1222 345554445444433 33333 3444444432 22211 111111 1122221 3555
Q ss_pred EEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee
Q psy11885 151 FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI 200 (327)
Q Consensus 151 ~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (327)
++..+ ++.++|.-+...... ..+.-.+...++.++.+|..+.+++...
T Consensus 709 ~v~~~-~~~LrI~~i~~~~~~-~~~~ipL~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 709 LALAN-NSTLTIGTIDEIQKL-HIRTVPLYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp EEEEC-SSCEEEEEECCSSSE-EEEEEECSSEEEEEEEEGGGTEEEEEEE
T ss_pred EEEEc-CCceEEEEecccCCe-eEEEEeCCCCceEEEEcCCCCEEEEEEE
Confidence 66544 556998877554322 2233345556788888888777666553
No 277
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.80 E-value=0.39 Score=46.43 Aligned_cols=207 Identities=9% Similarity=-0.078 Sum_probs=105.2
Q ss_pred CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEE-EEECCCeEEEEeCCCCc----eeeeee---CCCcEEEEecCC
Q psy11885 77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSR----CVGNYT---QPDKVFTMSLCG 148 (327)
Q Consensus 77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-sgs~d~~i~lwdl~~~~----~~~~~~---~~~~~~~~~~~~ 148 (327)
...|+..++.......+......+..|+|++..+.|+ +-...++|+.+++.... ....+. ....-+++.+.+
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence 4578888887655444333345678899998655555 44556889999987531 111122 112346677666
Q ss_pred CeEEE-EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885 149 EKFVV-GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 227 (327)
Q Consensus 149 ~~~~~-~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~ 227 (327)
..|+. -...+.|.+.|+...... ......+. .++.+++.|....+..+.......|+..+......... +.
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~-~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l--v~---- 554 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGVKRK-TLFRENGS-KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--VT---- 554 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEE-EEEECTTC-CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE--EC----
T ss_pred CcEEEEecCCCeEEEEeCCCCeEE-EEEeCCCC-CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE--Ee----
Confidence 55554 456678999998754321 11111221 24667776654444443322212232232221111100 00
Q ss_pred ccCCeeeEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcC--CcceEEEEECCCCCEEEEEEcc
Q psy11885 228 KEDGIEKIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRY--DTGITSLCFSYDGNVLAIACSY 298 (327)
Q Consensus 228 ~~~~~~~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~--~~~v~~l~fspdg~~la~~~~~ 298 (327)
.. ....+.|+++|....|..+ ...+.|...++....+...+... -....+|++. +.+|..+...
T Consensus 555 --~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~ 621 (791)
T 3m0c_C 555 --EN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDII 621 (791)
T ss_dssp --SS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred --CC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECC
Confidence 01 1136789999877766655 44578999987543332222211 1123466663 4456555443
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.78 E-value=0.24 Score=43.42 Aligned_cols=240 Identities=10% Similarity=0.006 Sum_probs=126.6
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceeee-
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETVI- 93 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~~- 93 (327)
+-+|.+..+ . .+|+.+ ....|+..++.+.+..........+..++|. ....++ +-...+.|..+++++.....+
T Consensus 78 ~~~C~~~~~-~-~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 78 RRSCKALGP-E-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp SSCEEECSS-C-CEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred CCeECCccc-c-ceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 345655555 2 344433 3467888998876644444333456778885 455555 545568899999887654332
Q ss_pred ecCCccEEEEEEeCCCCEE-EEEECCCeEEEEeCCCCceeeeeeC-CC--cEEEEecCCCeEEEEe-CC-CeEEEEECCC
Q psy11885 94 GTHDQPIRAVEYSDEVNCI-LTGSWDTSVKMWDPRSSRCVGNYTQ-PD--KVFTMSLCGEKFVVGT-AG-RKVCIWDLRN 167 (327)
Q Consensus 94 ~~h~~~V~~l~~~~~~~~l-~sgs~d~~i~lwdl~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~-~d-~~v~iwD~~~ 167 (327)
.........+++++.+..| ++-...+.|.+.++........+.. .. .-+++++.+..++... .. +.|...|+..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 2222334678888755555 4555678899999865432222221 11 2345565555555443 33 6788888865
Q ss_pred CccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCC
Q psy11885 168 MGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEY 247 (327)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~ 247 (327)
.... ......+. .++.+++.+....+..+..... .|+.++......... +. .+.. ....+++ ..+
T Consensus 235 ~~~~-~~~~~~~~-~PnGlavd~~~~~lY~aD~~~~-~I~~~d~dG~~~~~~--~~------~~~~---~P~giav-~~~ 299 (386)
T 3v65_B 235 SGRR-IIADTHLF-WPNGLTIDYAGRRMYWVDAKHH-VIERANLDGSHRKAV--IS------QGLP---HPFAITV-FED 299 (386)
T ss_dssp CSCE-EEECSSCS-CEEEEEEEGGGTEEEEEETTTT-EEEEECTTSCSCEEE--EC------SSCS---SEEEEEE-ETT
T ss_pred CCcE-EEEECCCC-CeeeEEEeCCCCEEEEEECCCC-EEEEEeCCCCeeEEE--EE------CCCC---CceEEEE-ECC
Confidence 3221 11111111 2456677665544444433222 233333221111100 00 0111 2346677 345
Q ss_pred CeEEEecCCCeEEEEeCCCceeeeecC
Q psy11885 248 NTFATGGSDGYVNIWDGFNKKRLCQFH 274 (327)
Q Consensus 248 ~~lasgs~dg~i~iWd~~~~~~~~~~~ 274 (327)
..+.+-...+.|..++..+++.+..+.
T Consensus 300 ~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 300 SLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 566666677889888866666555543
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.73 E-value=0.3 Score=43.64 Aligned_cols=205 Identities=11% Similarity=0.050 Sum_probs=100.9
Q ss_pred eeEEEeC---CceEEEEecCCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEECCC-----eEEEEeCCCCc--
Q psy11885 61 LDCCFQD---AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDT-----SVKMWDPRSSR-- 130 (327)
Q Consensus 61 ~~~~~~~---~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs~d~-----~i~lwdl~~~~-- 130 (327)
..+++.. ...|+.+...+.|+.+|..++....+.........++++++|+ |+.+...+ .+...+...+.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~ 220 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTE 220 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeec
Confidence 4566643 3566666555889999987766554444445578999999999 55544322 23333322111
Q ss_pred --eeeeeeCCCcEEEEec-CCCeEEEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEee-cCeEEE
Q psy11885 131 --CVGNYTQPDKVFTMSL-CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAV 206 (327)
Q Consensus 131 --~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i 206 (327)
.+..+..+ .-+++++ .+..+++-..++.|+.+|..++.................+++.++++.+.++.. ...+..
T Consensus 221 ~~~~~~~~~P-~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~ 299 (433)
T 4hw6_A 221 RLSLCNARGA-KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR 299 (433)
T ss_dssp EEEEEECSSB-CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred cccccccCCC-CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence 11111122 1244555 444444444667899999875432111111000011134677777764444433 333333
Q ss_pred EEccCCcccccceeeeeeeeeccCCe-------eeEEEeeEEEE---------ecCCCeEEEecCCCeEEEEeCCCcee
Q psy11885 207 EYLDTGPEMQKMKYAFKCHRIKEDGI-------EKIYPVNAISF---------HQEYNTFATGGSDGYVNIWDGFNKKR 269 (327)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~v~~v~~---------spd~~~lasgs~dg~i~iWd~~~~~~ 269 (327)
..++...........+... ....+. ........+++ .+++.++++-...+.|+.++. ++..
T Consensus 300 ~~~d~~~~~~~~~~~~ag~-~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v 376 (433)
T 4hw6_A 300 VDYNRETGKLAVPYIVCGQ-HSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV 376 (433)
T ss_dssp EEBCTTTCCBCCCEEEEEC-TTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred EeCCCCCcccCcEEEEEec-CCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence 3333211100000011000 000000 01113456888 677777777777889999984 4543
No 280
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.69 E-value=0.025 Score=53.97 Aligned_cols=150 Identities=9% Similarity=0.044 Sum_probs=81.7
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCC----CeEEEEecC-CCceeeEEEe--CCceEEEEecCCcEEEEEcCCC
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITN----NNLRLKYAH-SDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h-~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
..+.+|+|++.++.++++-...+.|+.+++.+ ......... -.....+++. .+...++-...+.|.+.+++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 46678999986554445444568899999875 221111111 1123455653 3344445455788999998766
Q ss_pred ceeeee-cCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeee----eeCCCcEEEEecCCCeEEEE-eCCCeE
Q psy11885 89 TETVIG-THDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGN----YTQPDKVFTMSLCGEKFVVG-TAGRKV 160 (327)
Q Consensus 89 ~~~~~~-~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~d~~v 160 (327)
....+. ........|+++|.+..|+.+.. .++|..+++........ +..+ .-+++++.+..|+.+ +..+.|
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P-nGlavd~~~~~LY~aD~~~~~I 564 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSI 564 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC-CCEEECTTTCCEEEEETTTTEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc-cEEEEeccCCEEEEEecCCCeE
Confidence 544332 22234577888886655554433 26788877653221111 1111 235566555554444 344567
Q ss_pred EEEECC
Q psy11885 161 CIWDLR 166 (327)
Q Consensus 161 ~iwD~~ 166 (327)
..+|+.
T Consensus 565 ~~~d~d 570 (699)
T 1n7d_A 565 SSIDVN 570 (699)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 777664
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.65 E-value=0.28 Score=42.37 Aligned_cols=206 Identities=7% Similarity=-0.038 Sum_probs=107.0
Q ss_pred CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCceeeeeeC---CCcEEEEecCCCeE-
Q psy11885 77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSRCVGNYTQ---PDKVFTMSLCGEKF- 151 (327)
Q Consensus 77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~~---~~~~~~~~~~~~~~- 151 (327)
...|+..+++......+......+..++|++..+.|+-. ...+.|..+++..+.....+.. ...-+++.+.+..+
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly 131 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY 131 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEE
Confidence 456888888765544333333447899999766666544 5678999999876543222221 12345666655554
Q ss_pred EEEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCC
Q psy11885 152 VVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG 231 (327)
Q Consensus 152 ~~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~ 231 (327)
++-...+.|.+.++...... ......+ ..++.+++.|....+..+.......|+.++.......... ..+
T Consensus 132 ~~d~~~~~I~~~~~dG~~~~-~l~~~~l-~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~~~ 201 (349)
T 3v64_C 132 WTDSGTSRIEVANLDGAHRK-VLLWQSL-EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------DTH 201 (349)
T ss_dssp EEETTTTEEEEEETTSCSCE-EEECTTC-SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC--------CSS
T ss_pred EEcCCCCeEEEEcCCCCceE-EEEeCCC-CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE--------ECC
Confidence 44455678999998754211 1111112 1246667776554444333322123333332211111000 001
Q ss_pred eeeEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEc
Q psy11885 232 IEKIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297 (327)
Q Consensus 232 ~~~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~ 297 (327)
....+.++++|++..|..+ +..+.|..+|.....+...+.........|++. ++ .|..+..
T Consensus 202 ---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~ 263 (349)
T 3v64_C 202 ---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDW 263 (349)
T ss_dssp ---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEET
T ss_pred ---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecC
Confidence 1135789999877766544 456789999976433222222212234677773 33 4444443
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.64 E-value=0.34 Score=43.25 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=88.3
Q ss_pred CCeeEEEEecC--CCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEEecCC----c-EEEEEcCC
Q psy11885 16 DGITAVKFAPN--SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSGGLDC----T-LKMFDFNT 87 (327)
Q Consensus 16 ~~I~~i~fs~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sgs~Dg----~-i~vwd~~~ 87 (327)
.....|+|+|+ ++. |..+...+.|+.+|..++++............+++. ++. ++.+...+ . +...+...
T Consensus 139 ~~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999984 344 444444489999999888876655444457788885 555 66554322 1 22233222
Q ss_pred Cce--eeeecCCccEEEEEEeC-CCCEEEEEECCCeEEEEeCCCCceeeee-eC--C--CcEEEEecCCCeEEEE-eCCC
Q psy11885 88 QTE--TVIGTHDQPIRAVEYSD-EVNCILTGSWDTSVKMWDPRSSRCVGNY-TQ--P--DKVFTMSLCGEKFVVG-TAGR 158 (327)
Q Consensus 88 ~~~--~~~~~h~~~V~~l~~~~-~~~~l~sgs~d~~i~lwdl~~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~-~~d~ 158 (327)
... ..+.. -.....+++++ ++.+.++-..++.|+.+|..+++....+ .. . ...+++++.++.|+++ ...+
T Consensus 217 ~~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 11211 12335678888 6665556566789999999877652222 21 1 1236777888866555 4567
Q ss_pred eEEEEECC
Q psy11885 159 KVCIWDLR 166 (327)
Q Consensus 159 ~v~iwD~~ 166 (327)
.|+.+|..
T Consensus 296 ~I~~~~~d 303 (433)
T 4hw6_A 296 CIYRVDYN 303 (433)
T ss_dssp EEEEEEBC
T ss_pred EEEEEeCC
Confidence 89998865
No 283
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.58 E-value=0.36 Score=42.81 Aligned_cols=204 Identities=11% Similarity=0.168 Sum_probs=116.3
Q ss_pred EEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCC--ceeeeecC-
Q psy11885 20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQ--TETVIGTH- 96 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~--~~~~~~~h- 96 (327)
+.-.+|. .+.+|.-. ..+++|+|+++.+..........|.-=.|-+...++-.. +..|..|+++.. ..+.+..|
T Consensus 70 sAIMnP~-~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 70 SAIMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEEECSS-SSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeeCCC-CcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecch
Confidence 4567784 45666544 789999999998865555555667666665454444333 668999999653 33455444
Q ss_pred ---CccEEEEEEeCCCCEEEEEE-------CCCeEEEEeCCCCceeeeeeCCCcEE-EEecCCC-----eEEEEeC---C
Q psy11885 97 ---DQPIRAVEYSDEVNCILTGS-------WDTSVKMWDPRSSRCVGNYTQPDKVF-TMSLCGE-----KFVVGTA---G 157 (327)
Q Consensus 97 ---~~~V~~l~~~~~~~~l~sgs-------~d~~i~lwdl~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~---d 157 (327)
+..|.....+++.++++..+ -.|.+++|..+.+. -+.++++...+ .+...|+ .+..+.. .
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 34677777888999876322 23677899876543 23344433222 2222322 1222222 2
Q ss_pred CeEEEEECCCCccceeeecccceeeeEEeE-EeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEE
Q psy11885 158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIK-CFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236 (327)
Q Consensus 158 ~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 236 (327)
+.++|-++.... ...-+++.+.+. ++|.. ....+
T Consensus 226 ~kLhi~Ei~~~~------~~~~~f~kk~vdv~fppe---------------------------------------~~~DF 260 (494)
T 1bpo_A 226 GKLHIIEVGTPP------TGNQPFPKKAVDVFFPPE---------------------------------------AQNDF 260 (494)
T ss_dssp CEEEEEECSCCC------TTCCCCCCEEEECCCCTT---------------------------------------STTCC
T ss_pred cEEEEEEcCCCc------cCCCCccceeeeeeCCcc---------------------------------------cccCc
Confidence 567777664320 000001101110 00000 00012
Q ss_pred EeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF 273 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~ 273 (327)
|| ++..|+....+..-..-|.|.+||++++..+..-
T Consensus 261 Pv-amqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 261 PV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp EE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ee-EEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 23 4677888888888889999999999999877543
No 284
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.30 E-value=0.47 Score=40.93 Aligned_cols=239 Identities=11% Similarity=0.000 Sum_probs=126.7
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCCceee-
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQTETV- 92 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~~~~~- 92 (327)
++.+|.+..+ . .+|+.+ ..+.|+..++.+............+..++|. ....++ +-...+.|..+++++.....
T Consensus 34 d~~~C~~~~~-~-~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 34 DRRSCKALGP-E-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TSSCEEESSS-C-CEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCccccccc-C-ceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 4556776665 3 344433 3456888888776654444333456778885 455555 44557889999988765433
Q ss_pred eecCCccEEEEEEeCCCCEE-EEEECCCeEEEEeCCCCceeeeeeC-CC--cEEEEecCCCeEEEE-eCC-CeEEEEECC
Q psy11885 93 IGTHDQPIRAVEYSDEVNCI-LTGSWDTSVKMWDPRSSRCVGNYTQ-PD--KVFTMSLCGEKFVVG-TAG-RKVCIWDLR 166 (327)
Q Consensus 93 ~~~h~~~V~~l~~~~~~~~l-~sgs~d~~i~lwdl~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~-~~d-~~v~iwD~~ 166 (327)
+.........+++.+.+..| ++-...+.|.+.++........+.. .. .-+++++.+..++.. ... +.|...++.
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d 190 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 190 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence 22222345678888755555 4555678999999865432222211 11 234566545554444 344 788888887
Q ss_pred CCccceeeecccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEec
Q psy11885 167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245 (327)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp 245 (327)
..... ......+. .++.+++.+....+..+.. .+.+.....+.. ...... . .... ....+++ .
T Consensus 191 G~~~~-~~~~~~~~-~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~--~~~~~~--~------~~~~---~P~giav-~ 254 (349)
T 3v64_C 191 GSGRR-IIADTHLF-WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKAVI--S------QGLP---HPFAITV-F 254 (349)
T ss_dssp SCSCE-ESCCSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEE--C------SSCS---SEEEEEE-E
T ss_pred CCCcE-EEEECCCC-CcceEEEeCCCCEEEEEECCCCEEEEEeCCCC--ceEEEE--e------CCCC---CceEEEE-E
Confidence 53211 11111111 2456777765554444433 333333223221 111100 0 0011 2345666 3
Q ss_pred CCCeEEEecCCCeEEEEeCCCceeeeec
Q psy11885 246 EYNTFATGGSDGYVNIWDGFNKKRLCQF 273 (327)
Q Consensus 246 d~~~lasgs~dg~i~iWd~~~~~~~~~~ 273 (327)
.+..+.+-...+.|...+..+++.+..+
T Consensus 255 ~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 255 EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 4555666666788888886666554444
No 285
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.25 E-value=0.47 Score=40.50 Aligned_cols=160 Identities=9% Similarity=0.106 Sum_probs=89.2
Q ss_pred EEEEEEeCCCCEEEEEE-CCCeEEEEeCCCCceeee-eeC-----CC--cEEEEec---C-CCeEEEEeC----------
Q psy11885 100 IRAVEYSDEVNCILTGS-WDTSVKMWDPRSSRCVGN-YTQ-----PD--KVFTMSL---C-GEKFVVGTA---------- 156 (327)
Q Consensus 100 V~~l~~~~~~~~l~sgs-~d~~i~lwdl~~~~~~~~-~~~-----~~--~~~~~~~---~-~~~~~~~~~---------- 156 (327)
-.+++|++....++.++ ..++|..||...+..... +.. .. ....+.. + ..+|+++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 45678988666666666 789999999975533222 221 00 2234444 2 234444332
Q ss_pred ----CCeEEEEECC---CCccceeeeccc-----------ceeeeEEeEEeeCCCceEEEeec-CeEEEEEccCCccccc
Q psy11885 157 ----GRKVCIWDLR---NMGYIMQRRESS-----------LKFQTRCIKCFPNKQGYVLSSIE-GRAAVEYLDTGPEMQK 217 (327)
Q Consensus 157 ----d~~v~iwD~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 217 (327)
++.|..+|+. +.+.+....... ......-++..+.++.+++.+.. +.+ +.++..... .
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I--~rV~pdG~~-~ 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI--ARVSADGKT-V 171 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE--EEECTTSCC-E
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeE--EEEeCCCCE-E
Confidence 5779999998 555443222111 11124556666777888877766 443 333332210 0
Q ss_pred ceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCc
Q psy11885 218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNK 267 (327)
Q Consensus 218 ~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~ 267 (327)
..+... .... ......+.|+++|++..|++...+|.+..+|+.+.
T Consensus 172 ~~~~~~-~~~~----~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 172 STFAWE-SGNG----GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEEC-CCCS----SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeeeec-CCCc----ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 101000 0000 00012568999999999888877999999998754
No 286
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.13 E-value=1.4 Score=44.65 Aligned_cols=118 Identities=9% Similarity=0.057 Sum_probs=71.8
Q ss_pred cCCCCCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEE--EecCCCceeeEEEeC-------CceEEEEec-CCc
Q psy11885 10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL--KYAHSDPVLDCCFQD-------AVHSFSGGL-DCT 79 (327)
Q Consensus 10 ~~~~~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~h~~~v~~~~~~~-------~~~~~sgs~-Dg~ 79 (327)
+..+....|.+.+.+. . +++.++ ++.+.++.+..+++.. ...-...|.|+.+.+ +..++.|.+ |++
T Consensus 508 w~~p~~~~I~~As~n~--~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~t 583 (1158)
T 3ei3_A 508 WKEPQAKNISVASCNS--S-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDIS 583 (1158)
T ss_dssp ECCTTCCCCCEEEECS--S-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTE
T ss_pred EECCCCCEEEEEEeCC--C-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCE
Confidence 3334445688887664 3 444444 6788888887666432 223456788888741 357888887 999
Q ss_pred EEEEEcCCCceeeeecC--CccEEEEEEe--CCCCEEEEEECCCeEEE--EeCCCCce
Q psy11885 80 LKMFDFNTQTETVIGTH--DQPIRAVEYS--DEVNCILTGSWDTSVKM--WDPRSSRC 131 (327)
Q Consensus 80 i~vwd~~~~~~~~~~~h--~~~V~~l~~~--~~~~~l~sgs~d~~i~l--wdl~~~~~ 131 (327)
|++++++.-.......- +....++.+. ....+|..|-.||.+.- +|..+++.
T Consensus 584 v~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l 641 (1158)
T 3ei3_A 584 ARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLL 641 (1158)
T ss_dssp EEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCE
T ss_pred EEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcc
Confidence 99999986443222111 2234444443 23357889999998754 44445543
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.86 E-value=0.72 Score=39.21 Aligned_cols=198 Identities=13% Similarity=0.048 Sum_probs=99.4
Q ss_pred CCcEEEEEcCCCc--eeeeecCCccEEEEEEeCCCCEEE-EEECCCeEEEEeCCCCceeee-ee-C--CCcEEEEecCCC
Q psy11885 77 DCTLKMFDFNTQT--ETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSRCVGN-YT-Q--PDKVFTMSLCGE 149 (327)
Q Consensus 77 Dg~i~vwd~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~-sgs~d~~i~lwdl~~~~~~~~-~~-~--~~~~~~~~~~~~ 149 (327)
...|+..+++... ...+......+.+++|++..+.|+ +-...+.|..+++..+..... +. . ...-+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4578888887653 222222223466889998655555 545678999999876532111 11 1 122356665444
Q ss_pred eEE-EEeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeec
Q psy11885 150 KFV-VGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIK 228 (327)
Q Consensus 150 ~~~-~~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~ 228 (327)
.++ +-...+.|.++|+...... ......+ ..++.+++.|....+..+.......|+.++......... .
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~-~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--~------ 161 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRK-VLFWQEL-DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII--I------ 161 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCE-EEECSSC-SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE--E------
T ss_pred eEEEEECCCCEEEEEECCCCcEE-EEEeCCC-CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE--E------
Confidence 444 4456678999998753211 1111112 124566666654443333322122333333221111000 0
Q ss_pred cCCeeeEEEeeEEEEecCCCeEEEe-cCCCeEEEEeCCCceeeeecCcCCcceEEEEECC
Q psy11885 229 EDGIEKIYPVNAISFHQEYNTFATG-GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSY 287 (327)
Q Consensus 229 ~~~~~~~~~v~~v~~spd~~~lasg-s~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fsp 287 (327)
..+ ....+.++++|++..|..+ +..+.|..+|.....+.............|++..
T Consensus 162 ~~~---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~ 218 (318)
T 3sov_A 162 NSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE 218 (318)
T ss_dssp CSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET
T ss_pred ECC---CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC
Confidence 001 1135789999977666554 4568899999764322211221122335677743
No 288
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.83 E-value=0.53 Score=41.64 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=41.8
Q ss_pred EEeeEEEEecC---CCeEEEecCCCeEEEEeCCCce-eeeecC---------cCCcceEEEEECCCCCEEEEE
Q psy11885 236 YPVNAISFHQE---YNTFATGGSDGYVNIWDGFNKK-RLCQFH---------RYDTGITSLCFSYDGNVLAIA 295 (327)
Q Consensus 236 ~~v~~v~~spd---~~~lasgs~dg~i~iWd~~~~~-~~~~~~---------~~~~~v~~l~fspdg~~la~~ 295 (327)
.+|..+-|||- +..|++=..|++||+||+.... ....+. .....|.+++|+++|-.|-..
T Consensus 125 s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl 197 (452)
T 3pbp_A 125 SSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL 197 (452)
T ss_dssp CCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred CceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence 36889999995 4689988899999999987521 111121 112457899999987766554
No 289
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.74 E-value=0.66 Score=47.39 Aligned_cols=106 Identities=8% Similarity=0.062 Sum_probs=66.7
Q ss_pred EEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCc--eeeeecC--
Q psy11885 21 VKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQT--ETVIGTH-- 96 (327)
Q Consensus 21 i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~--~~~~~~h-- 96 (327)
.-.+|. .+.+|.- ...+++|+|+++.+.......+.+|.-=.|-+...++-.. +..|..|+++... .+.+..|
T Consensus 71 AIMnP~-~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 71 AIMNPA-SKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred hccCCC-cceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 445774 3455544 3789999999887754444444566655665554444333 5689999996532 2334344
Q ss_pred --CccEEEEEEeCCCCEEEEEE-------CCCeEEEEeCCCC
Q psy11885 97 --DQPIRAVEYSDEVNCILTGS-------WDTSVKMWDPRSS 129 (327)
Q Consensus 97 --~~~V~~l~~~~~~~~l~sgs-------~d~~i~lwdl~~~ 129 (327)
+..|.....+++.++++..| -.|.+++|..+.+
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence 35677777788888876332 3478888887654
No 290
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.63 E-value=0.98 Score=39.07 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=38.3
Q ss_pred EeeEEEEecCCCeEEEecC-----------------CCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEEEEEEccc
Q psy11885 237 PVNAISFHQEYNTFATGGS-----------------DGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN 299 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~-----------------dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~la~~~~~~ 299 (327)
..|.+++.++|++.++... .|.|+-+|. ++......+. ..-+.|+|||||+.|..+.+..
T Consensus 166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l-~~pNGia~spDg~~lYvadt~~ 242 (355)
T 3sre_A 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGF-DFANGINISPDGKYVYIAELLA 242 (355)
T ss_dssp SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEE-SSEEEEEECTTSSEEEEEEGGG
T ss_pred CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCC-cccCcceECCCCCEEEEEeCCC
Confidence 4688999999988887641 245555554 2211111121 2347899999999998887643
No 291
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.59 E-value=0.86 Score=38.21 Aligned_cols=148 Identities=7% Similarity=-0.006 Sum_probs=82.8
Q ss_pred CCeeEEEEecCCCcEEEEEEC-CC-cEEEEECCCCeEEEEecCC--CceeeEEEeCCceEEEE-ecCCcEEEEEcCCCce
Q psy11885 16 DGITAVKFAPNSNQFLLASSW-DC-NVSLYDITNNNLRLKYAHS--DPVLDCCFQDAVHSFSG-GLDCTLKMFDFNTQTE 90 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~-d~-~i~iwd~~~~~~~~~~~h~--~~v~~~~~~~~~~~~sg-s~Dg~i~vwd~~~~~~ 90 (327)
.....+++++++ +++++... ++ .|..+|..++++....... .....++...+..++.. ..++.|.++|..++..
T Consensus 72 ~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 72 GKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp SEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence 467899999965 55554433 22 4667777777754433221 12233443334444444 3578888888765422
Q ss_pred eee--e---------cCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCC-Cce--eeeee--CCCcEEEEecCCCeEEE
Q psy11885 91 TVI--G---------THDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRS-SRC--VGNYT--QPDKVFTMSLCGEKFVV 153 (327)
Q Consensus 91 ~~~--~---------~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~-~~~--~~~~~--~~~~~~~~~~~~~~~~~ 153 (327)
... . ..-...+.+ +++++.|+.+ ...++|..+|+.. ++. ...+. ....-++++.+|+.+++
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE
T ss_pred eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE
Confidence 111 0 011234455 7787766655 5578999999864 321 11111 11223567777866555
Q ss_pred EeCCCeEEEEECC
Q psy11885 154 GTAGRKVCIWDLR 166 (327)
Q Consensus 154 ~~~d~~v~iwD~~ 166 (327)
....+.|.++|..
T Consensus 229 ~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 229 THIYNSVVRIAPD 241 (306)
T ss_dssp CBTTCCEEEECTT
T ss_pred eCCCCeEEEECCC
Confidence 5567889999875
No 292
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.56 E-value=0.93 Score=38.35 Aligned_cols=152 Identities=8% Similarity=0.029 Sum_probs=92.2
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCcEEEEECCC----CeEEEEec-CCCceeeEEEe-CCceEE-EEecCCcEEEEEcCC
Q psy11885 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITN----NNLRLKYA-HSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNT 87 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~-h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~ 87 (327)
...+.+++|++.++.++.+-..++.|+.++..+ ........ .-.....+++. .+..++ +-...+.|.+.+++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 356789999986555666656678999999876 22222222 11234567774 344454 556678999999876
Q ss_pred Cceeee-ecCCccEEEEEEeCCCCEEEEEECC--CeEEEEeCCCCceeeeee--C--CCcEEEEecCCCeEEEEe-CCCe
Q psy11885 88 QTETVI-GTHDQPIRAVEYSDEVNCILTGSWD--TSVKMWDPRSSRCVGNYT--Q--PDKVFTMSLCGEKFVVGT-AGRK 159 (327)
Q Consensus 88 ~~~~~~-~~h~~~V~~l~~~~~~~~l~sgs~d--~~i~lwdl~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~-~d~~ 159 (327)
.....+ .........++++|.+..++.+... +.|...++... ....+. . ...-+++++.+..++.+. ..+.
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 554333 2233456899999877766655543 68888887532 222221 1 112356666666666554 5568
Q ss_pred EEEEECCC
Q psy11885 160 VCIWDLRN 167 (327)
Q Consensus 160 v~iwD~~~ 167 (327)
|..+|+..
T Consensus 188 I~~~d~dg 195 (316)
T 1ijq_A 188 ISSIDVNG 195 (316)
T ss_dssp EEEEETTS
T ss_pred EEEEecCC
Confidence 99999874
No 293
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.42 E-value=1.3 Score=39.01 Aligned_cols=155 Identities=8% Similarity=0.013 Sum_probs=94.0
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCC----eEEEEec-CCCceeeEEEe-CCceE-EEEecCCcEEEEEcC
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNN----NLRLKYA-HSDPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFN 86 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~-h~~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~ 86 (327)
....+.+|+|++.++.++.+-...+.|+.+++.+. ....... .-.....+++. .+..+ ++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34678899999865555555556788999998752 2222222 22345567764 24444 455567889999988
Q ss_pred CCceeee-ecCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeeeeC---CCcEEEEecCCCeEEEEe-CCCe
Q psy11885 87 TQTETVI-GTHDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNYTQ---PDKVFTMSLCGEKFVVGT-AGRK 159 (327)
Q Consensus 87 ~~~~~~~-~~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~d~~ 159 (327)
......+ .........|+++|.+..|+.... .+.|...++........... ...-+++++.+..|+.+. ..+.
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~ 269 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 269 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence 7654433 323345689999997766665543 37898888864332221111 112456666667776664 4578
Q ss_pred EEEEECCCC
Q psy11885 160 VCIWDLRNM 168 (327)
Q Consensus 160 v~iwD~~~~ 168 (327)
|..+|+...
T Consensus 270 I~~~d~dG~ 278 (400)
T 3p5b_L 270 ISSIDVNGG 278 (400)
T ss_dssp EEEEETTSC
T ss_pred EEEEeCCCC
Confidence 999998653
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.33 E-value=1.4 Score=38.82 Aligned_cols=231 Identities=9% Similarity=-0.028 Sum_probs=120.7
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCC-----ceeeeecCCccEE
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQ-----TETVIGTHDQPIR 101 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~-----~~~~~~~h~~~V~ 101 (327)
.+|+.+. ...|+..++..............+..++|. ....++ +-...+.|..++++.. ....+........
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 3555443 578999999877644444444567788885 455555 4445678888988752 1223332334567
Q ss_pred EEEEeCCCCEEE-EEECCCeEEEEeCCCCceeeeeeC-CC--cEEEEecCCCeEEEEeC--CCeEEEEECCCCccceeee
Q psy11885 102 AVEYSDEVNCIL-TGSWDTSVKMWDPRSSRCVGNYTQ-PD--KVFTMSLCGEKFVVGTA--GRKVCIWDLRNMGYIMQRR 175 (327)
Q Consensus 102 ~l~~~~~~~~l~-sgs~d~~i~lwdl~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~--d~~v~iwD~~~~~~~~~~~ 175 (327)
.|++...++.|+ +-...+.|.+.++........+.. .. .-+++.+.+..|+.... .+.|...++...... ...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~~ 241 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV 241 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-EEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-EEE
Confidence 899987544454 555678999999876543322221 11 23455655555555432 367888888753321 111
Q ss_pred cccceeeeEEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEec
Q psy11885 176 ESSLKFQTRCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG 254 (327)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs 254 (327)
...+ ..++.+++.+....+..+.. ...+....++. ....... .. ..... ....+++. .+..+.+-.
T Consensus 242 ~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~--~~----~~~l~---~P~gl~v~-~~~lywtd~ 308 (400)
T 3p5b_L 242 TENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTIL--ED----EKRLA---HPFSLAVF-EDKVFWTDI 308 (400)
T ss_dssp CSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CCCEEEE--EC----SSTTS---SEEEEEEE-TTEEEEEES
T ss_pred ECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC--CccEEEE--eC----CCCCC---CCEEEEEe-CCEEEEecC
Confidence 1111 12456666665554444433 23333322221 1111110 00 00011 12345553 334555666
Q ss_pred CCCeEEEEeCCCceeeeecC
Q psy11885 255 SDGYVNIWDGFNKKRLCQFH 274 (327)
Q Consensus 255 ~dg~i~iWd~~~~~~~~~~~ 274 (327)
..+.|..+|..+++.+..+.
T Consensus 309 ~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 309 INEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp SSCSEEEEESSSCCCCEEEE
T ss_pred CCCeEEEEEcCCCCceEEEe
Confidence 67888888877776555543
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.21 E-value=0.095 Score=50.02 Aligned_cols=177 Identities=8% Similarity=-0.071 Sum_probs=86.0
Q ss_pred CCcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCC----CceeeeeeC---CCcEEEEecCC
Q psy11885 77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRS----SRCVGNYTQ---PDKVFTMSLCG 148 (327)
Q Consensus 77 Dg~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~----~~~~~~~~~---~~~~~~~~~~~ 148 (327)
.+.|+..++++.....+......+..|+|++..+.|+.+ ...++|+.+++.. ......+.. ...-+++.+.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 357778887765543332222345688999877666655 4568899999875 222111111 11224445444
Q ss_pred CeEEE-EeCCCeEEEEECCCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeee
Q psy11885 149 EKFVV-GTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRI 227 (327)
Q Consensus 149 ~~~~~-~~~d~~v~iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~ 227 (327)
..|+. -...+.|.+.|+...... ......+ ..++.+++.|....+..+.......|..++......... .
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~-~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l--~----- 535 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRK-TLFREQG-SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--V----- 535 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEE-EECCCSS-CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE--S-----
T ss_pred CcEEEEeccCCeEEEEecCCCceE-EEEeCCC-CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE--E-----
Confidence 44443 345678888888653211 1111111 122444555543333332221112222222211110000 0
Q ss_pred ccCCeeeEEEeeEEEEecCCCeEE-EecCCCeEEEEeCCC
Q psy11885 228 KEDGIEKIYPVNAISFHQEYNTFA-TGGSDGYVNIWDGFN 266 (327)
Q Consensus 228 ~~~~~~~~~~v~~v~~spd~~~la-sgs~dg~i~iWd~~~ 266 (327)
... ....+.|+|+|++..|. +-+..+.|..+++..
T Consensus 536 -~~~---l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 536 -TEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp -CSS---CSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred -eCC---CCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 000 11356899999866554 445567899999764
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.11 E-value=2.2 Score=39.97 Aligned_cols=154 Identities=4% Similarity=-0.056 Sum_probs=90.7
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-cCCCceeeEEE-eCCceEEEEec--CCcEEEEEcCCCcee
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF-QDAVHSFSGGL--DCTLKMFDFNTQTET 91 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~-~~~~~~~sgs~--Dg~i~vwd~~~~~~~ 91 (327)
.....|++.+.++.++++-...+.|.+.++.+....... ..-.....+++ +.+..++-+.+ .+.|...+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 467899999866666666667789999999765533333 22234567777 34556665544 356666676654433
Q ss_pred eee-cCCccEEEEEEeCCCCEEEEE-ECCCeEEEEeCCCCceeeeee-CCCcEEEEecCCCeEEEEe-CCCeEEEEECCC
Q psy11885 92 VIG-THDQPIRAVEYSDEVNCILTG-SWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCGEKFVVGT-AGRKVCIWDLRN 167 (327)
Q Consensus 92 ~~~-~h~~~V~~l~~~~~~~~l~sg-s~d~~i~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~d~~v~iwD~~~ 167 (327)
.+. ..-.....|+++++++.|+.+ ...+.|...|+.......... .......+...++.++... ..+.|...|..+
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCC
Confidence 332 223346889999877777666 446789999986543221111 1111223334445555543 456788888765
Q ss_pred Cc
Q psy11885 168 MG 169 (327)
Q Consensus 168 ~~ 169 (327)
++
T Consensus 244 g~ 245 (619)
T 3s94_A 244 GE 245 (619)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 297
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.80 E-value=1.6 Score=36.96 Aligned_cols=150 Identities=7% Similarity=-0.004 Sum_probs=91.1
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--EEEecCCCceeeEEEe--CCceEEEEecCCcEEEEEcCCCceee
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKYAHSDPVLDCCFQ--DAVHSFSGGLDCTLKMFDFNTQTETV 92 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~h~~~v~~~~~~--~~~~~~sgs~Dg~i~vwd~~~~~~~~ 92 (327)
.+.+++|++.++.++.+-...+.|+.++..++.. ......-.....+++. .+...++-...+.|.+++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4668899986555666656678899999876531 1111111234456664 34444455567889999987654443
Q ss_pred ee-cCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeee-eC---CCcEEEEecCCCeEEEE-eCCCeEEEEE
Q psy11885 93 IG-THDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNY-TQ---PDKVFTMSLCGEKFVVG-TAGRKVCIWD 164 (327)
Q Consensus 93 ~~-~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~-~~d~~v~iwD 164 (327)
+. ........+++.|.+..++.+.. .+.|...++.... ...+ .. ...-+++++.+..++.+ +..+.|..+|
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 32 33345689999987666666553 5788888876432 2222 11 11235666656666655 4557888888
Q ss_pred CCC
Q psy11885 165 LRN 167 (327)
Q Consensus 165 ~~~ 167 (327)
+..
T Consensus 195 ~dG 197 (318)
T 3sov_A 195 LDG 197 (318)
T ss_dssp TTS
T ss_pred CCC
Confidence 864
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.74 E-value=1.7 Score=36.89 Aligned_cols=258 Identities=10% Similarity=0.059 Sum_probs=117.4
Q ss_pred CCCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe--EEEEec---CCCceeeEEEeCCceEEEEecCCcEEEEEcCCC
Q psy11885 14 PEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN--LRLKYA---HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQ 88 (327)
Q Consensus 14 ~~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~---h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~ 88 (327)
....+++|.|.+. +..++ ++.++.|. +....++ ...... ....+..+.|.+ ..++.++.++.|.. ..+.+
T Consensus 34 ~~~~~~~v~~~~~-~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 34 TTATILDMSFIDR-HHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp CSSCEEEEEESSS-SCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTT
T ss_pred CCCcEEEEEECCC-CcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCC
Confidence 3467999999863 45555 56677653 3344443 121111 233567777765 44555566665444 22322
Q ss_pred ce-eeee---cCCccEEEEEEeCCCCEEEEEECCCeE-EEEeCCCCceeeeeeC--CCcEEEE--ecCCCeEEEEeCCCe
Q psy11885 89 TE-TVIG---THDQPIRAVEYSDEVNCILTGSWDTSV-KMWDPRSSRCVGNYTQ--PDKVFTM--SLCGEKFVVGTAGRK 159 (327)
Q Consensus 89 ~~-~~~~---~h~~~V~~l~~~~~~~~l~sgs~d~~i-~lwdl~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~d~~ 159 (327)
+. .... .+...+..+.+.+++..++. +.++.| +..| .++.-..... ...+..+ .+.+..++++...+.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~ 185 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMI-TNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSF 185 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEE-ETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSE
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEE-eCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcE
Confidence 21 1111 13345677777666655554 456654 3333 2332222221 2223333 344545555544444
Q ss_pred EEEEEC--CCCccceeeecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEE
Q psy11885 160 VCIWDL--RNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP 237 (327)
Q Consensus 160 v~iwD~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 237 (327)
.+-+|- .+-..+ ..........+.+.+++. +++...++...+...|.+..+...... .+.....
T Consensus 186 ~~S~d~gG~tW~~~----~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~---------~~~~~~~ 251 (327)
T 2xbg_A 186 YSTWEPGQTAWEPH----NRTTSRRLHNMGFTPDGR-LWMIVNGGKIAFSDPDNSENWGELLSP---------LRRNSVG 251 (327)
T ss_dssp EEEECTTCSSCEEE----ECCSSSCEEEEEECTTSC-EEEEETTTEEEEEETTEEEEECCCBCT---------TSSCCSC
T ss_pred EEEeCCCCCceeEC----CCCCCCccceeEECCCCC-EEEEeCCceEEEecCCCCCeeEeccCC---------cccCCcc
Confidence 555553 111111 001111123344444443 333333443222111112111111100 0000012
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecC---cCCcceEEEEECCCCCEEEEE
Q psy11885 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH---RYDTGITSLCFSYDGNVLAIA 295 (327)
Q Consensus 238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~---~~~~~v~~l~fspdg~~la~~ 295 (327)
+.++++.|++..++++. +|.| ++....++.-..+. .....+.+++|.++++.+|.|
T Consensus 252 ~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G 310 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG 310 (327)
T ss_dssp EEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC
T ss_pred eEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc
Confidence 56788888887777765 6666 44444454332222 223467889998776655544
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.65 E-value=3.4 Score=39.92 Aligned_cols=166 Identities=9% Similarity=-0.034 Sum_probs=90.1
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCCC-----ceeeeecCCccEEE
Q psy11885 30 FLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNTQ-----TETVIGTHDQPIRA 102 (327)
Q Consensus 30 ~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~~-----~~~~~~~h~~~V~~ 102 (327)
+|+.+ ....|+..++...+...+......+..++|. ....++ +-...+.|+.++++.. ...++.........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 44433 3567888888776644444444556778884 344554 5555678888988753 12233323345678
Q ss_pred EEEeCCCCEEEE-EECCCeEEEEeCCCCceeeeee-CCC--cEEEEecCCCeEEEEeC--CCeEEEEECCCCccceeeec
Q psy11885 103 VEYSDEVNCILT-GSWDTSVKMWDPRSSRCVGNYT-QPD--KVFTMSLCGEKFVVGTA--GRKVCIWDLRNMGYIMQRRE 176 (327)
Q Consensus 103 l~~~~~~~~l~s-gs~d~~i~lwdl~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~--d~~v~iwD~~~~~~~~~~~~ 176 (327)
|++...++.|+. -...++|.+.++........+. ... .-+++.+....|+.... .+.|.+.++...... ....
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv~ 554 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVT 554 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEEC
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEEe
Confidence 999887765554 4567899999987543322222 111 23455655455555443 267888888754321 1111
Q ss_pred ccceeeeEEeEEeeCCCceEEE
Q psy11885 177 SSLKFQTRCIKCFPNKQGYVLS 198 (327)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~ 198 (327)
..+. .++.+++.+....+..+
T Consensus 555 ~~l~-~P~GLavD~~~~~LYwa 575 (791)
T 3m0c_C 555 ENIQ-WPNGITLDLLSGRLYWV 575 (791)
T ss_dssp SSCS-CEEEEEEETTTTEEEEE
T ss_pred CCCC-CceEEEEecCCCeEEEE
Confidence 1221 24556666554444444
No 300
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.60 E-value=1.7 Score=36.15 Aligned_cols=140 Identities=13% Similarity=0.130 Sum_probs=74.4
Q ss_pred CcEEEEEE-CC-----CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC-----CcEEEEEcCCCc---ee
Q psy11885 28 NQFLLASS-WD-----CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD-----CTLKMFDFNTQT---ET 91 (327)
Q Consensus 28 ~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D-----g~i~vwd~~~~~---~~ 91 (327)
+.+++.|| .+ ..+.+||..+++-........+ -.+++..++...+.|+.+ ..+.+||..++. -.
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~ 94 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY 94 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE
Confidence 46777777 33 4789999988874332211111 123333466666677765 468889987765 33
Q ss_pred eeecCC--ccEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeeeeeCCC---cEEEEecCCCeEEEEeCC----
Q psy11885 92 VIGTHD--QPIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGNYTQPD---KVFTMSLCGEKFVVGTAG---- 157 (327)
Q Consensus 92 ~~~~h~--~~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d---- 157 (327)
.+.... ..-.+++. .+++.++.|+.+ ..+.+||+.+++....-..+. ....+...+..++.|+.+
T Consensus 95 ~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 173 (301)
T 2vpj_A 95 SVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNI 173 (301)
T ss_dssp EECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCB
T ss_pred ECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcc
Confidence 222110 00111222 245666666643 468899998876433221111 112223345455555543
Q ss_pred -CeEEEEECCCC
Q psy11885 158 -RKVCIWDLRNM 168 (327)
Q Consensus 158 -~~v~iwD~~~~ 168 (327)
..+.+||+.+.
T Consensus 174 ~~~~~~~d~~~~ 185 (301)
T 2vpj_A 174 LNSVEKYDPHTG 185 (301)
T ss_dssp CCCEEEEETTTT
T ss_pred cceEEEEeCCCC
Confidence 46888998764
No 301
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=94.58 E-value=1.8 Score=36.50 Aligned_cols=223 Identities=9% Similarity=-0.036 Sum_probs=115.5
Q ss_pred CCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEE-EEecCCcEEEEEcCC----Cce-eeeecCCccEEEEEEeCCC
Q psy11885 37 DCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSF-SGGLDCTLKMFDFNT----QTE-TVIGTHDQPIRAVEYSDEV 109 (327)
Q Consensus 37 d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~-sgs~Dg~i~vwd~~~----~~~-~~~~~h~~~V~~l~~~~~~ 109 (327)
.+.|+..|+.+.+.......-..+..++|. .+..++ +-...+.|..+++++ ... ..+...-.....+++++.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 456899999887644333333456778885 455555 555568899999876 222 2232222345788898755
Q ss_pred CEEE-EEECCCeEEEEeCCCCceeeeee-CCC--cEEEEecCCCeEEEEeCC--CeEEEEECCCCccceeeecccceeee
Q psy11885 110 NCIL-TGSWDTSVKMWDPRSSRCVGNYT-QPD--KVFTMSLCGEKFVVGTAG--RKVCIWDLRNMGYIMQRRESSLKFQT 183 (327)
Q Consensus 110 ~~l~-sgs~d~~i~lwdl~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~d--~~v~iwD~~~~~~~~~~~~~~~~~~~ 183 (327)
..|+ +-...++|.+.|+........+. ... .-+++++.+..++..... +.|...++...... ......+ ..+
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~~~~~~-~~P 166 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENI-QWP 166 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSC-SCE
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EEEECCC-CCc
Confidence 5554 44667899999987543322222 111 234556555555554433 68888887643211 1111112 124
Q ss_pred EEeEEeeCCCceEEEee-cCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEE
Q psy11885 184 RCIKCFPNKQGYVLSSI-EGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIW 262 (327)
Q Consensus 184 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iW 262 (327)
+.+++.+....+..+.. .+.+....++. ....... .. ..... ....+++. .+..+.+-...+.|..+
T Consensus 167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~--~~----~~~~~---~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 167 NGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTIL--ED----EKRLA---HPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEE--EC----TTTTS---SEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred eEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEe--ec----CCccC---CcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 56666665554444433 33333333331 1111100 00 00011 13456664 35556666667889888
Q ss_pred eCCCceeeeec
Q psy11885 263 DGFNKKRLCQF 273 (327)
Q Consensus 263 d~~~~~~~~~~ 273 (327)
+..+++.+..+
T Consensus 235 ~~~~g~~~~~i 245 (316)
T 1ijq_A 235 NRLTGSDVNLL 245 (316)
T ss_dssp ETTTCCCCEEE
T ss_pred eCCCCcceEEE
Confidence 87666544433
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.47 E-value=2.2 Score=36.90 Aligned_cols=81 Identities=9% Similarity=0.107 Sum_probs=48.7
Q ss_pred EeeEEEEecCCCeEEEec-CCCeEEEEeCCC-cee--eeecCcCCcceEEEEECC-CCCEEEEEEccccccCC-CCCCCC
Q psy11885 237 PVNAISFHQEYNTFATGG-SDGYVNIWDGFN-KKR--LCQFHRYDTGITSLCFSY-DGNVLAIACSYNYELET-PPDPIP 310 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs-~dg~i~iWd~~~-~~~--~~~~~~~~~~v~~l~fsp-dg~~la~~~~~~~~~~~-~~~~~~ 310 (327)
..|.++|+||++.|..+. ..+.|+.|++.. ++. ...+ ......-.+++.+ +|++.+++......+.+ -|+..+
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~ 300 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPP 300 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCC
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCC
Confidence 368899999998876654 468899998753 321 1122 2234457799999 59988766533333333 233333
Q ss_pred CCcEEEEE
Q psy11885 311 PNNIFIRH 318 (327)
Q Consensus 311 ~~~~~~~~ 318 (327)
...|+-+.
T Consensus 301 ~s~v~rI~ 308 (355)
T 3sre_A 301 GSEVLRIQ 308 (355)
T ss_dssp CEEEEEEE
T ss_pred CCEEEEEE
Confidence 44444443
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.18 E-value=2.5 Score=36.40 Aligned_cols=178 Identities=13% Similarity=0.176 Sum_probs=90.0
Q ss_pred CCCEEEEEECCCeEEEEeCCCCceeeeeeCCC-cEE----EEecCCCe--EEEEe--C--CCeEEEEECC-CCccceeee
Q psy11885 108 EVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD-KVF----TMSLCGEK--FVVGT--A--GRKVCIWDLR-NMGYIMQRR 175 (327)
Q Consensus 108 ~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~-~~~----~~~~~~~~--~~~~~--~--d~~v~iwD~~-~~~~~~~~~ 175 (327)
...+++....++.+.+||+ +++.++.+.... .-. .+...+.. ++.++ . +++|++|++. ..+.+....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 3456777777889999999 788888776411 112 23333443 34433 3 5789999773 222221110
Q ss_pred cc--cce---eeeEEeEE--eeCCCc--eEEEeecCeEEEEEcc-CCc--ccccceeeeeeeeeccCCeeeEEEeeEEEE
Q psy11885 176 ES--SLK---FQTRCIKC--FPNKQG--YVLSSIEGRAAVEYLD-TGP--EMQKMKYAFKCHRIKEDGIEKIYPVNAISF 243 (327)
Q Consensus 176 ~~--~~~---~~~~~~~~--~~~~~~--~~~~~~~~~~~i~~~~-~~~--~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~ 243 (327)
.. ... ..+..+++ .+.... ..+...++....+.+. ... ...+....+.. . ..+..|..
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---g-------sq~Egcvv 187 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---N-------SQTEGMAA 187 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---S-------SCEEEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---C-------CCcceEEE
Confidence 00 000 11122333 333332 2333334444332221 111 11111111110 0 13567888
Q ss_pred ecCCCeEEEecCCCeEEEEeCC-----CceeeeecC--cCCcceEEEEE--CCCCC-EEEEEE
Q psy11885 244 HQEYNTFATGGSDGYVNIWDGF-----NKKRLCQFH--RYDTGITSLCF--SYDGN-VLAIAC 296 (327)
Q Consensus 244 spd~~~lasgs~dg~i~iWd~~-----~~~~~~~~~--~~~~~v~~l~f--spdg~-~la~~~ 296 (327)
.+....|..+-+|.-|..++.. +++.+..+. .....+-.|++ .++|+ ||+++|
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs 250 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS 250 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence 8989999999999777666754 344444432 12235677777 67777 777776
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.07 E-value=3.3 Score=37.50 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=88.4
Q ss_pred CeeEEEEecC-CCcEEEEEECCCcEEEEECCCCeEEEEecCC----CceeeEEE-------e-CCceEEEEecCC-c---
Q psy11885 17 GITAVKFAPN-SNQFLLASSWDCNVSLYDITNNNLRLKYAHS----DPVLDCCF-------Q-DAVHSFSGGLDC-T--- 79 (327)
Q Consensus 17 ~I~~i~fs~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~----~~v~~~~~-------~-~~~~~~sgs~Dg-~--- 79 (327)
....|+|+|. .+.++++-...+.|++.|.+++.+..+..-. .....++| . ++..++.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 4455555554578999999998876554321 24677888 6 556677776554 2
Q ss_pred ---EEEEEcCC-Cce------eeeecCCccEEEEEEeCC-CCEEEEEECCCeEEEEeCC-------CCce----------
Q psy11885 80 ---LKMFDFNT-QTE------TVIGTHDQPIRAVEYSDE-VNCILTGSWDTSVKMWDPR-------SSRC---------- 131 (327)
Q Consensus 80 ---i~vwd~~~-~~~------~~~~~h~~~V~~l~~~~~-~~~l~sgs~d~~i~lwdl~-------~~~~---------- 131 (327)
|.+.+... +.. ..+.... ....++++|+ +.++++-..++.|..+|+. +++.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 44554333 111 1222212 2346778885 4555556677889999987 4543
Q ss_pred -eee-eeCC----CcEEEEecCCCeEEEE-eCCCeEEEEEC
Q psy11885 132 -VGN-YTQP----DKVFTMSLCGEKFVVG-TAGRKVCIWDL 165 (327)
Q Consensus 132 -~~~-~~~~----~~~~~~~~~~~~~~~~-~~d~~v~iwD~ 165 (327)
... +..+ ...+++++.++.++++ +....|+.+|.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 111 2221 2346778888865555 45668888654
No 305
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.46 E-value=5 Score=37.57 Aligned_cols=153 Identities=8% Similarity=0.032 Sum_probs=94.5
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCC-CceeeEEEe-CCceE-EEEecCCcEEEEEcCCCceee
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHS-DPVLDCCFQ-DAVHS-FSGGLDCTLKMFDFNTQTETV 92 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~-~~v~~~~~~-~~~~~-~sgs~Dg~i~vwd~~~~~~~~ 92 (327)
..+.+|+|++.++.++.+-..++.|+.+++.+.......... .....+++. .+..+ ++-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 467899999976655566556789999998765433333221 235566763 33444 455556889999987665443
Q ss_pred ee-cCCccEEEEEEeCCCCEEEEEEC--CCeEEEEeCCCCceeeeeeCCC--cEEEEecCCCeEEEE-eCCCeEEEEECC
Q psy11885 93 IG-THDQPIRAVEYSDEVNCILTGSW--DTSVKMWDPRSSRCVGNYTQPD--KVFTMSLCGEKFVVG-TAGRKVCIWDLR 166 (327)
Q Consensus 93 ~~-~h~~~V~~l~~~~~~~~l~sgs~--d~~i~lwdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~d~~v~iwD~~ 166 (327)
+. ..-.....|++.|....|+-..+ .+.|...++............. .-+++++.+.+++.+ ...+.|...|+.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 32 33345689999986666665553 5688888876443222222211 235566656666665 455688888886
Q ss_pred CC
Q psy11885 167 NM 168 (327)
Q Consensus 167 ~~ 168 (327)
..
T Consensus 197 G~ 198 (628)
T 4a0p_A 197 GL 198 (628)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 306
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.29 Score=42.11 Aligned_cols=110 Identities=12% Similarity=0.125 Sum_probs=70.4
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEecCC--CceeeEEEe---CCceEEEE--ecCCcEEEEEcCCCceeeeec-----C
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKYAHS--DPVLDCCFQ---DAVHSFSG--GLDCTLKMFDFNTQTETVIGT-----H 96 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~~h~--~~v~~~~~~---~~~~~~sg--s~Dg~i~vwd~~~~~~~~~~~-----h 96 (327)
.++++++.||.|.-.|..+|+.+-.+... .++....-. .+..++.+ ..||.+..++.+++..+.... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999976555432 233222111 12244444 579999999987764332111 2
Q ss_pred CccEEE---EEE-----eCCCCEEEEEECCCeEEEEeCCCCceeeeeeCC
Q psy11885 97 DQPIRA---VEY-----SDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQP 138 (327)
Q Consensus 97 ~~~V~~---l~~-----~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~ 138 (327)
..++.. ... ...+..+++|+.++++...|+++|+.++++...
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 223321 000 014568999999999999999999998887653
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.33 E-value=3 Score=34.64 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=74.0
Q ss_pred CcEEEEEECC--CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC----CcEEEEEcCCCceeeeecCCcc
Q psy11885 28 NQFLLASSWD--CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD----CTLKMFDFNTQTETVIGTHDQP 99 (327)
Q Consensus 28 ~~~l~s~~~d--~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D----g~i~vwd~~~~~~~~~~~h~~~ 99 (327)
+.+++.||.+ ..+.+||..+++-.....-..+ -.+++..++...+.|+.+ ..+.++|..++.-..+.....+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4567777754 6799999988873322211111 122333456666677755 5677888877653322211000
Q ss_pred --EEEEEEeCCCCEEEEEECC------CeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeC---------CCe
Q psy11885 100 --IRAVEYSDEVNCILTGSWD------TSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTA---------GRK 159 (327)
Q Consensus 100 --V~~l~~~~~~~~l~sgs~d------~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~---------d~~ 159 (327)
-.+++. -+++.++.|+.+ ..+.+||+.+++.... +..+- ....+...+..++.|+. -+.
T Consensus 92 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 170 (306)
T 3ii7_A 92 RDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170 (306)
T ss_dssp CBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCC
T ss_pred ccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccce
Confidence 011111 255666777765 5688999988764332 11111 11222334444455542 345
Q ss_pred EEEEECCCC
Q psy11885 160 VCIWDLRNM 168 (327)
Q Consensus 160 v~iwD~~~~ 168 (327)
+.+||+.+.
T Consensus 171 ~~~yd~~~~ 179 (306)
T 3ii7_A 171 CEVYDPATE 179 (306)
T ss_dssp EEEEETTTT
T ss_pred EEEeCCCCC
Confidence 888998765
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=92.75 E-value=4.3 Score=34.83 Aligned_cols=69 Identities=4% Similarity=-0.044 Sum_probs=42.5
Q ss_pred ceeeEEEeCCceEEEEecCCcEEEEEcCCCceeee------ecCCccEEEEEEeCC---CCEEEEEEC-C-----CeEEE
Q psy11885 59 PVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVI------GTHDQPIRAVEYSDE---VNCILTGSW-D-----TSVKM 123 (327)
Q Consensus 59 ~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~------~~h~~~V~~l~~~~~---~~~l~sgs~-d-----~~i~l 123 (327)
....++|.+...++.+..++.|++++ + +....+ .........|+++|+ +..|+.+.. . +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 34577885433466667789999998 3 322211 111345788999998 555655443 2 67888
Q ss_pred EeCCCC
Q psy11885 124 WDPRSS 129 (327)
Q Consensus 124 wdl~~~ 129 (327)
|++..+
T Consensus 110 ~~~~~~ 115 (352)
T 2ism_A 110 LRHLGE 115 (352)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 887643
No 309
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.46 E-value=2.6 Score=36.14 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=64.2
Q ss_pred CceEEEEecCCcEEEEEcCCCceeeeecCC--ccEEEEEE--eCCCCEEEEE--ECCCeEEEEeCCCCceeeeeeCCCcE
Q psy11885 68 AVHSFSGGLDCTLKMFDFNTQTETVIGTHD--QPIRAVEY--SDEVNCILTG--SWDTSVKMWDPRSSRCVGNYTQPDKV 141 (327)
Q Consensus 68 ~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h~--~~V~~l~~--~~~~~~l~sg--s~d~~i~lwdl~~~~~~~~~~~~~~~ 141 (327)
+..++.++.||.|.-+|.++++........ .++....- .+.+..++.+ +.||.|..+|.++|.....+..+..+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 346788899999999998888765432221 22222110 0112234443 68999999999888654443322111
Q ss_pred ----EEEe----c-------CCCeEEEEeCCCeEEEEECCCCccce
Q psy11885 142 ----FTMS----L-------CGEKFVVGTAGRKVCIWDLRNMGYIM 172 (327)
Q Consensus 142 ----~~~~----~-------~~~~~~~~~~d~~v~iwD~~~~~~~~ 172 (327)
.... . .+..+++++.++.+.-.|+++++.+.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence 1100 1 45678899999999999999887543
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.41 E-value=2.5 Score=35.04 Aligned_cols=140 Identities=17% Similarity=0.167 Sum_probs=72.4
Q ss_pred CcEEEEEECCC-----cEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC-------CcEEEEEcCCCceeee
Q psy11885 28 NQFLLASSWDC-----NVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD-------CTLKMFDFNTQTETVI 93 (327)
Q Consensus 28 ~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D-------g~i~vwd~~~~~~~~~ 93 (327)
+.+++.||.++ .+.+||..+++-........+ -.+++..++...+.|+.+ ..+.+||+.++.-..+
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 188 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI 188 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC
Confidence 46777787653 578899888774332221111 123333455555666543 3577888877653322
Q ss_pred ecCCc--cEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeeee--eCCC-cEEEEecCCCeEEEEeCCC-----
Q psy11885 94 GTHDQ--PIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGNY--TQPD-KVFTMSLCGEKFVVGTAGR----- 158 (327)
Q Consensus 94 ~~h~~--~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~d~----- 158 (327)
..... .-.+++. -+++.++.|+.+ +.+.+||+++++....- ..+- ....+...+..++.|+.++
T Consensus 189 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~ 267 (302)
T 2xn4_A 189 AEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLA 267 (302)
T ss_dssp CCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCC
T ss_pred CCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccc
Confidence 11100 0112222 245666777654 46889999887643221 1111 1122233444555555442
Q ss_pred eEEEEECCCC
Q psy11885 159 KVCIWDLRNM 168 (327)
Q Consensus 159 ~v~iwD~~~~ 168 (327)
.+.+||+.+.
T Consensus 268 ~v~~yd~~~~ 277 (302)
T 2xn4_A 268 SVEYYNPTTD 277 (302)
T ss_dssp CEEEEETTTT
T ss_pred cEEEEcCCCC
Confidence 4777777653
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.40 E-value=4.5 Score=34.21 Aligned_cols=142 Identities=8% Similarity=0.021 Sum_probs=71.2
Q ss_pred CCCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeE--EEEe--cCCCceeeEEEeCCceEEEEecCCcEE-EEEcCCCc
Q psy11885 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKY--AHSDPVLDCCFQDAVHSFSGGLDCTLK-MFDFNTQT 89 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~--~h~~~v~~~~~~~~~~~~sgs~Dg~i~-vwd~~~~~ 89 (327)
...+.+|+|++ + ..++ ++.++.|.. ....++. .... .+...+..+.+.+...++.++.++.|. -.| .+.
T Consensus 79 ~~~~~~i~~~~-~-~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-N-EGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD--SGK 152 (327)
T ss_dssp CCEEEEEEEET-T-EEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS--TTS
T ss_pred CccEEEEEecC-C-eEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC--CCC
Confidence 34689999986 3 4444 455665544 2333431 1111 133456666664334455455566542 232 222
Q ss_pred e--eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee--CCCcEEE--EecCCCeEEEEeCCCeEEEE
Q psy11885 90 E--TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT--QPDKVFT--MSLCGEKFVVGTAGRKVCIW 163 (327)
Q Consensus 90 ~--~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~d~~v~iw 163 (327)
. .....+...+..+.+.+++..++.+...+..+.+|-. ++.-..+. ....... +...+ .++.++.++.+++.
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g-~~~~~~~~G~~~~s 230 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDG-RLWMIVNGGKIAFS 230 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTS-CEEEEETTTEEEEE
T ss_pred CCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCC-CEEEEeCCceEEEe
Confidence 1 1222344568889999988877666544444555531 22211111 1222333 33334 45566677887776
Q ss_pred E
Q psy11885 164 D 164 (327)
Q Consensus 164 D 164 (327)
+
T Consensus 231 ~ 231 (327)
T 2xbg_A 231 D 231 (327)
T ss_dssp E
T ss_pred c
Confidence 4
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.33 E-value=2.6 Score=37.29 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=72.1
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCe-----------EE-EEe--c-----CCCceeeEEEe----CCceEE
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-----------LR-LKY--A-----HSDPVLDCCFQ----DAVHSF 72 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~-~~~--~-----h~~~v~~~~~~----~~~~~~ 72 (327)
+.|..+..+|+ +.+||..+ +..|.|-.+..+. +. ..+ + ...+|..+.|+ .+..++
T Consensus 66 ~~i~qlvlSps-G~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LV 143 (452)
T 3pbp_A 66 DDTFHVISSTS-GDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIV 143 (452)
T ss_dssp CTTCEEEECTT-SSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEE
T ss_pred CceeEEEECCC-CCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEE
Confidence 47888999995 57888776 6788888876221 11 111 1 23568899995 356788
Q ss_pred EEecCCcEEEEEcCCCc--eeeee---------cCCccEEEEEEeCCCCEEEEEE--CCCeEEEE
Q psy11885 73 SGGLDCTLKMFDFNTQT--ETVIG---------THDQPIRAVEYSDEVNCILTGS--WDTSVKMW 124 (327)
Q Consensus 73 sgs~Dg~i~vwd~~~~~--~~~~~---------~h~~~V~~l~~~~~~~~l~sgs--~d~~i~lw 124 (327)
.--.|+.||+||+.... +..+. .....|.+++|..++-.|+..+ ..|.|...
T Consensus 144 VLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 144 VLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 88889999999998522 11111 1235688999998877666655 77877644
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.17 E-value=5.7 Score=32.85 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=72.2
Q ss_pred CcEEEEEECC----CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC-----CcEEEEEcCCCceeeeecC
Q psy11885 28 NQFLLASSWD----CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD-----CTLKMFDFNTQTETVIGTH 96 (327)
Q Consensus 28 ~~~l~s~~~d----~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D-----g~i~vwd~~~~~~~~~~~h 96 (327)
+.+++.||.+ ..+..||..+++-.....-..+ -.+++..++...+.|+.+ ..+.+||..++.-..+...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 3567777754 4688999988873332211111 122333456666677755 3577888876653322211
Q ss_pred Cc--cEEEEEEeCCCCEEEEEECCC-----eEEEEeCCCCceeee--eeCCCc-EEEEecCCCeEEEEeC-------CCe
Q psy11885 97 DQ--PIRAVEYSDEVNCILTGSWDT-----SVKMWDPRSSRCVGN--YTQPDK-VFTMSLCGEKFVVGTA-------GRK 159 (327)
Q Consensus 97 ~~--~V~~l~~~~~~~~l~sgs~d~-----~i~lwdl~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~-------d~~ 159 (327)
.. .-.+++. -++..++.|+.++ .+.+||+.+++.... +..+-. .......+..++.|+. -..
T Consensus 96 p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 174 (302)
T 2xn4_A 96 RDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLST 174 (302)
T ss_dssp SSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCC
T ss_pred CccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccE
Confidence 00 0011222 2456666776553 578899987764332 111111 1222234444555543 245
Q ss_pred EEEEECCCC
Q psy11885 160 VCIWDLRNM 168 (327)
Q Consensus 160 v~iwD~~~~ 168 (327)
+.+||+.+.
T Consensus 175 ~~~yd~~~~ 183 (302)
T 2xn4_A 175 VECYNATTN 183 (302)
T ss_dssp EEEEETTTT
T ss_pred EEEEeCCCC
Confidence 888998764
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=90.83 E-value=11 Score=35.37 Aligned_cols=114 Identities=7% Similarity=-0.071 Sum_probs=70.0
Q ss_pred CCCeeEEEEecCCCcEEEEEE--CCCcEEEEECCCCeEEEEecCCCceeeEEEe-CCceEEEE-ecCCcEEEEEcCCCce
Q psy11885 15 EDGITAVKFAPNSNQFLLASS--WDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFSG-GLDCTLKMFDFNTQTE 90 (327)
Q Consensus 15 ~~~I~~i~fs~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~-~~~~~~sg-s~Dg~i~vwd~~~~~~ 90 (327)
-...++|+++|..+. |.... ..+.|...++...........-.....+++. ++..++-+ ...+.|...|++....
T Consensus 122 l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 122 LDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR 200 (628)
T ss_dssp CCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence 356789999996544 44444 2467888888765543333333456678885 45666644 4467888999876544
Q ss_pred eeeecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885 91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR 130 (327)
Q Consensus 91 ~~~~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~ 130 (327)
..+.........|++.. +..+.+-...+.|...|..+++
T Consensus 201 ~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 201 EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 44433333345777765 3444444457889988876654
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=90.43 E-value=6.6 Score=32.37 Aligned_cols=139 Identities=16% Similarity=0.180 Sum_probs=73.1
Q ss_pred CcEEEEEECC-----CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC-----CcEEEEEcCCCceeeeec
Q psy11885 28 NQFLLASSWD-----CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD-----CTLKMFDFNTQTETVIGT 95 (327)
Q Consensus 28 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D-----g~i~vwd~~~~~~~~~~~ 95 (327)
+.+++.||.+ ..+.+||..+++-........+ -.+++..++...+.|+.+ ..+.++|+.++.-..+..
T Consensus 113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 192 (301)
T 2vpj_A 113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP 192 (301)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC
Confidence 5677777754 3688999988873322221111 123333466666677655 457888887765333221
Q ss_pred CCcc--EEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeCC-----CeE
Q psy11885 96 HDQP--IRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTAG-----RKV 160 (327)
Q Consensus 96 h~~~--V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~d-----~~v 160 (327)
...+ -.++.. -+++.++.|+.+ ..+.+||+++++.... +..+. ....+...+..++.|+.+ ..+
T Consensus 193 ~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v 271 (301)
T 2vpj_A 193 MATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSI 271 (301)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEE
T ss_pred CCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccE
Confidence 1111 111222 245666777664 5689999988764332 11111 112223344445555544 356
Q ss_pred EEEECCC
Q psy11885 161 CIWDLRN 167 (327)
Q Consensus 161 ~iwD~~~ 167 (327)
.+||+++
T Consensus 272 ~~yd~~~ 278 (301)
T 2vpj_A 272 ECYDPII 278 (301)
T ss_dssp EEEETTT
T ss_pred EEEcCCC
Confidence 7777764
No 316
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=89.80 E-value=7.8 Score=32.26 Aligned_cols=105 Identities=9% Similarity=0.033 Sum_probs=57.2
Q ss_pred CCcEEEEEECC--------CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEec-C-----CcEEEEEcCCCce
Q psy11885 27 SNQFLLASSWD--------CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGL-D-----CTLKMFDFNTQTE 90 (327)
Q Consensus 27 ~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~-D-----g~i~vwd~~~~~~ 90 (327)
++.+++.||.+ ..+.+||..+++-.....-..+ -.+++..++...+.|+. + ..+.+||..+..-
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 34677777743 4689999988763322211111 12333356666667766 2 4688888877643
Q ss_pred eeeecCCcc--EEEEEEeCCCCEEEEEECCC-----eEEEEeCCCCcee
Q psy11885 91 TVIGTHDQP--IRAVEYSDEVNCILTGSWDT-----SVKMWDPRSSRCV 132 (327)
Q Consensus 91 ~~~~~h~~~--V~~l~~~~~~~~l~sgs~d~-----~i~lwdl~~~~~~ 132 (327)
..+.....+ -.+++. -+++.++.|+.++ .+.+||+.+.+..
T Consensus 178 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 178 KELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp EECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred EECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 322211100 111222 2556677777654 5889999887543
No 317
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=89.57 E-value=13 Score=34.61 Aligned_cols=220 Identities=8% Similarity=-0.028 Sum_probs=106.3
Q ss_pred CCCcEEEEECCCCe--EEEEecCCCceeeEEEe-CCceEEEE-ecCCcEEEEEcCCCc--eeeeecCCccEEEEEEeCCC
Q psy11885 36 WDCNVSLYDITNNN--LRLKYAHSDPVLDCCFQ-DAVHSFSG-GLDCTLKMFDFNTQT--ETVIGTHDQPIRAVEYSDEV 109 (327)
Q Consensus 36 ~d~~i~iwd~~~~~--~~~~~~h~~~v~~~~~~-~~~~~~sg-s~Dg~i~vwd~~~~~--~~~~~~h~~~V~~l~~~~~~ 109 (327)
..+.|+.-|+.... .......-.....++|. .+..++-+ ...+.|..++++... ...+..--.....|+++..+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 35678888887643 22222223346677875 45556544 446788888887653 22333222457889999866
Q ss_pred CEEEEE-ECCCeEEEEeCCCCceeeeee-C--CCcEEEEecCCCeEEEEeC--CCeEEEEECCCCccceeeecccceeee
Q psy11885 110 NCILTG-SWDTSVKMWDPRSSRCVGNYT-Q--PDKVFTMSLCGEKFVVGTA--GRKVCIWDLRNMGYIMQRRESSLKFQT 183 (327)
Q Consensus 110 ~~l~sg-s~d~~i~lwdl~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~--d~~v~iwD~~~~~~~~~~~~~~~~~~~ 183 (327)
+.|+.+ ...+.|.+.++.......... . ...-+++.+.+..++.... ...|...++...... ......+ ..+
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~~~-~~P 173 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEI-YWP 173 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSC-SSE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-EEEeCCC-CCC
Confidence 655554 557899999987543211111 1 1223566665555554443 356777777643211 1111111 123
Q ss_pred EEeEEeeCCCceEEEeecCeEEEEEccCCcccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEe
Q psy11885 184 RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD 263 (327)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd 263 (327)
..+++.+....+..+.... ..|+..+........... .. ......+++..+ ..+.+-...+.|...|
T Consensus 174 ~Glald~~~~~LY~aD~~~-~~I~~~~~dG~~~~~~~~--------~~---~~~P~gi~~~~~-~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKL-NFIHKSNLDGTNRQAVVK--------GS---LPHPFALTLFED-ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEEEETTTTEEEEEETTT-CCEEEESSSCCEEC--------------------CCCEEESSS-EEEEECTTTCSEEEEE
T ss_pred cEEEEEccCCEEEEEeCCC-CeEEEecCCCCccEEEEe--------CC---CCCceEEEEeCC-EEEEecCCCCEEEEEE
Confidence 5566665544444433222 123233322111111000 00 111345676655 4445555667888888
Q ss_pred CCCceee
Q psy11885 264 GFNKKRL 270 (327)
Q Consensus 264 ~~~~~~~ 270 (327)
..+++..
T Consensus 241 ~~tg~~~ 247 (619)
T 3s94_A 241 KYTGEGL 247 (619)
T ss_dssp SSSCCCC
T ss_pred CCCCccc
Confidence 7766543
No 318
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=89.36 E-value=3 Score=33.35 Aligned_cols=102 Identities=4% Similarity=-0.066 Sum_probs=56.7
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEecCCCc--------eeeEEEeCCceEEEEecCCcEEEEEcCC
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDP--------VLDCCFQDAVHSFSGGLDCTLKMFDFNT 87 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~--------v~~~~~~~~~~~~sgs~Dg~i~vwd~~~ 87 (327)
..++.++|+|+ +.+.++ .+|.+.-.+..+.+......-... -..+.|-....++.. .||.|..++-.+
T Consensus 41 ~~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCC-ccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 36789999995 455554 577766666544221111110111 234455333444444 579998887533
Q ss_pred Cce-e------eeecCC-ccEEEEEEeCCCCEEEEEECCCeEEE
Q psy11885 88 QTE-T------VIGTHD-QPIRAVEYSDEVNCILTGSWDTSVKM 123 (327)
Q Consensus 88 ~~~-~------~~~~h~-~~V~~l~~~~~~~~l~sgs~d~~i~l 123 (327)
... . .+..+. ..+..|.+.|+|.+.+.. |+.+.-
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 221 1 121111 457999999999866665 787543
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=88.90 E-value=7.8 Score=32.19 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=71.4
Q ss_pred CcEEEEEECC-----CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEecC-----CcEEEEEcCCCceeeeec
Q psy11885 28 NQFLLASSWD-----CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGLD-----CTLKMFDFNTQTETVIGT 95 (327)
Q Consensus 28 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~D-----g~i~vwd~~~~~~~~~~~ 95 (327)
+++++.||.+ ..+.+||..+++-........+ -.+++..++...+.|+.+ ..+.+||+.+..-..+..
T Consensus 122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 201 (308)
T 1zgk_A 122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA 201 (308)
T ss_dssp TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC
T ss_pred CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC
Confidence 4677777644 4688999988773332211111 122333456666677655 457888887664332211
Q ss_pred C---CccEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeCC-----Ce
Q psy11885 96 H---DQPIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTAG-----RK 159 (327)
Q Consensus 96 h---~~~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~d-----~~ 159 (327)
. ...-..+.+ +++.++.|+.+ ..+.+||+.+.+.... +..+- ....+...+..++.|+.+ ..
T Consensus 202 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 279 (308)
T 1zgk_A 202 MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDS 279 (308)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCE
T ss_pred CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccce
Confidence 1 111112222 55666777654 5689999988764332 11111 112222344445555533 35
Q ss_pred EEEEECCC
Q psy11885 160 VCIWDLRN 167 (327)
Q Consensus 160 v~iwD~~~ 167 (327)
+.+||+.+
T Consensus 280 v~~yd~~~ 287 (308)
T 1zgk_A 280 VECYDPDT 287 (308)
T ss_dssp EEEEETTT
T ss_pred EEEEcCCC
Confidence 67777764
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=87.65 E-value=11 Score=31.16 Aligned_cols=141 Identities=10% Similarity=0.060 Sum_probs=73.8
Q ss_pred CCcEEEEEECC------CcEEEEECCCCeEEEEecCCC--ceeeEEEeCCceEEEEec---------CCcEEEEEcCCCc
Q psy11885 27 SNQFLLASSWD------CNVSLYDITNNNLRLKYAHSD--PVLDCCFQDAVHSFSGGL---------DCTLKMFDFNTQT 89 (327)
Q Consensus 27 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~h~~--~v~~~~~~~~~~~~sgs~---------Dg~i~vwd~~~~~ 89 (327)
++.+++.||.+ ..+.+||..+++-........ .-.+++..++...+.|+. -..+.+||..+..
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 35677888765 568999998887333221111 112233345555556654 3457788887765
Q ss_pred eeeeecCCc--cEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeCC--
Q psy11885 90 ETVIGTHDQ--PIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTAG-- 157 (327)
Q Consensus 90 ~~~~~~h~~--~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~d-- 157 (327)
-..+..... .-.+++.. +++.++.|+.+ ..+.+||+.+++.... +..+. ...++...+..++.|+.+
T Consensus 181 W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 259 (306)
T 3ii7_A 181 WTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGV 259 (306)
T ss_dssp EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSS
T ss_pred EEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCC
Confidence 333221111 11122222 45566666543 4688999988764322 11111 112223345556666643
Q ss_pred ---CeEEEEECCCC
Q psy11885 158 ---RKVCIWDLRNM 168 (327)
Q Consensus 158 ---~~v~iwD~~~~ 168 (327)
+.+.+||+.+.
T Consensus 260 ~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 260 GRLGHILEYNTETD 273 (306)
T ss_dssp SBCCEEEEEETTTT
T ss_pred eeeeeEEEEcCCCC
Confidence 46778887653
No 321
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=86.47 E-value=14 Score=31.26 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=46.4
Q ss_pred CCcEEEEEECC-CcEEEEECCC--CeEEEEecCC--Cc-eeeEEEeCCceEEEEec-C---------CcEEEEEcCCCce
Q psy11885 27 SNQFLLASSWD-CNVSLYDITN--NNLRLKYAHS--DP-VLDCCFQDAVHSFSGGL-D---------CTLKMFDFNTQTE 90 (327)
Q Consensus 27 ~~~~l~s~~~d-~~i~iwd~~~--~~~~~~~~h~--~~-v~~~~~~~~~~~~sgs~-D---------g~i~vwd~~~~~~ 90 (327)
++.+++.||.+ ..+.++|... .+-.....-. .. -.+++..++...+.||. + ..+.+||..++.-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 35677777754 5788999874 4322221111 11 12333345655666665 2 4678888877653
Q ss_pred eeeecCC-cc--EEEEEEeCCCCEEEEEECC
Q psy11885 91 TVIGTHD-QP--IRAVEYSDEVNCILTGSWD 118 (327)
Q Consensus 91 ~~~~~h~-~~--V~~l~~~~~~~~l~sgs~d 118 (327)
..+.... .+ -.+++. .+++.++.|+.+
T Consensus 99 ~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp EECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred EECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 3222111 11 111222 456677777765
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.80 E-value=1.4 Score=35.29 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=42.0
Q ss_pred eEEEEecCCCeEEEecCCCeEEEEeCCCceeeee------c-CcCCcceEEEEECCCCCEEEEEEccccccCCCC
Q psy11885 239 NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ------F-HRYDTGITSLCFSYDGNVLAIACSYNYELETPP 306 (327)
Q Consensus 239 ~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~------~-~~~~~~v~~l~fspdg~~la~~~~~~~~~~~~~ 306 (327)
.++.|.|+|.+.++ .||.|+-++-.+...-.. + ...=..+..|.|.|+|.+.|+. ...+....+|
T Consensus 91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P 162 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPP 162 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCC
T ss_pred eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCC
Confidence 47899999988888 569998887432111111 1 0011357899999999999988 4444444454
No 323
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=83.79 E-value=18 Score=33.35 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=41.7
Q ss_pred EEeeEEEEecCCCeEEEecC------------CCeEEEEeCCCceeeeecCcC-CcceEEEEECCCCCEEEEEE
Q psy11885 236 YPVNAISFHQEYNTFATGGS------------DGYVNIWDGFNKKRLCQFHRY-DTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 236 ~~v~~v~~spd~~~lasgs~------------dg~i~iWd~~~~~~~~~~~~~-~~~v~~l~fspdg~~la~~~ 296 (327)
...+.|+|+++|.+.+.... ...+..++..+++....+... ...++.++||||+++|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999988884322 125666676666644433322 23579999999999998885
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=83.01 E-value=19 Score=29.88 Aligned_cols=104 Identities=12% Similarity=0.130 Sum_probs=55.3
Q ss_pred CcEEEEEECC-------CcEEEEECCCCeEEEEecCCCce--eeEEEeCCceEEEEec------CCcEEEEEcCCCceee
Q psy11885 28 NQFLLASSWD-------CNVSLYDITNNNLRLKYAHSDPV--LDCCFQDAVHSFSGGL------DCTLKMFDFNTQTETV 92 (327)
Q Consensus 28 ~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~h~~~v--~~~~~~~~~~~~sgs~------Dg~i~vwd~~~~~~~~ 92 (327)
+.+++.||.+ ..+.+||..+++-........+. .+++..++...+.|+. -..+.++|..++.-..
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~ 189 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD 189 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEE
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE
Confidence 4677778764 35888898887733222111111 1233345655566654 2458888887765332
Q ss_pred eecCCc--cEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCcee
Q psy11885 93 IGTHDQ--PIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRCV 132 (327)
Q Consensus 93 ~~~h~~--~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~~ 132 (327)
+..... .-.+++. -+++.++.|+.+ ..+.+||+.+++..
T Consensus 190 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 190 LAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred CCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 221110 1112222 245666666643 35778999887643
No 325
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=82.94 E-value=27 Score=31.57 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=62.4
Q ss_pred eeEEEe--CCceEEEEecC-CcEEEEEcCCCceeeeecC----CccEEEEEE-------eCCCCEEEEEECCC-------
Q psy11885 61 LDCCFQ--DAVHSFSGGLD-CTLKMFDFNTQTETVIGTH----DQPIRAVEY-------SDEVNCILTGSWDT------- 119 (327)
Q Consensus 61 ~~~~~~--~~~~~~sgs~D-g~i~vwd~~~~~~~~~~~h----~~~V~~l~~-------~~~~~~l~sgs~d~------- 119 (327)
..++|. +...|+.+... +.|++.|++.+....+..- ......|+| +++++.|+.+...+
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 355664 24556655543 6788888887765543321 124789999 99999777776654
Q ss_pred eEEEEeCCC-Cce--------eeeeeCCCcEEEEecCCCe-EEEEeCCCeEEEEECC
Q psy11885 120 SVKMWDPRS-SRC--------VGNYTQPDKVFTMSLCGEK-FVVGTAGRKVCIWDLR 166 (327)
Q Consensus 120 ~i~lwdl~~-~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~d~~v~iwD~~ 166 (327)
.|.+++... ++. +..+..+. .+.+++.+.. +++-..++.|..+|+.
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~~~p~-giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAYKQCN-GATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEESCCC-CEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred eEEEEecCCCCceeecccceeeccCCCce-EEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 266666433 222 12222222 3455664344 5555677889999987
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.76 E-value=7.6 Score=38.39 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=32.7
Q ss_pred cEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee
Q psy11885 99 PIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT 136 (327)
Q Consensus 99 ~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~ 136 (327)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677777888899999999999999999999987653
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=82.59 E-value=19 Score=29.69 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=55.2
Q ss_pred CCcEEEEEECC----CcEEEEECCCCeEEEEecCCCc--eeeEEEeCCceEEEEec----C-----CcEEEEEcCCCcee
Q psy11885 27 SNQFLLASSWD----CNVSLYDITNNNLRLKYAHSDP--VLDCCFQDAVHSFSGGL----D-----CTLKMFDFNTQTET 91 (327)
Q Consensus 27 ~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~h~~~--v~~~~~~~~~~~~sgs~----D-----g~i~vwd~~~~~~~ 91 (327)
++.+++.||.+ ..+.+||..+++-........+ -.+++..++...+.|+. + ..+.++|..++.-.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 45677778742 4689999988874332211111 11233345555666665 2 46778888776533
Q ss_pred eeec---CCccEEEEEEeCCCCEEEEEECC-----CeEEEEeCCCCce
Q psy11885 92 VIGT---HDQPIRAVEYSDEVNCILTGSWD-----TSVKMWDPRSSRC 131 (327)
Q Consensus 92 ~~~~---h~~~V~~l~~~~~~~~l~sgs~d-----~~i~lwdl~~~~~ 131 (327)
.+.. ....-..+.+ +++.++.|+.+ ..+.+||+.+++.
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 2211 1111112222 45566666543 4678899887654
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=82.56 E-value=5 Score=34.45 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=36.7
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEeCCCcee--eeec----CcCCcceEEEEECCC
Q psy11885 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQF----HRYDTGITSLCFSYD 288 (327)
Q Consensus 238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~--~~~~----~~~~~~v~~l~fspd 288 (327)
.+.++|.|||++|++--..|.|++++..+++. +..+ ...+.....|+|+||
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 46899999999888776689999998655443 2212 123456789999995
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=81.58 E-value=23 Score=29.88 Aligned_cols=131 Identities=8% Similarity=0.025 Sum_probs=60.3
Q ss_pred CcEEEEECCCCeEEEEec--CCCce-eeEEEeCCceEEEEec------CCcEEEEEc--CCCceeeeecC---CccE-EE
Q psy11885 38 CNVSLYDITNNNLRLKYA--HSDPV-LDCCFQDAVHSFSGGL------DCTLKMFDF--NTQTETVIGTH---DQPI-RA 102 (327)
Q Consensus 38 ~~i~iwd~~~~~~~~~~~--h~~~v-~~~~~~~~~~~~sgs~------Dg~i~vwd~--~~~~~~~~~~h---~~~V-~~ 102 (327)
..+.+||..+++-..... ..... .+++..++...+.|+. ...+..+|+ ++..-..+... .... .+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 578999998887332221 11111 2344445555566654 235666776 33322222111 1101 11
Q ss_pred EEEeCCCCEEEEEECC----------------------CeEEEEeCCCCceeee--eeCCC-cEEEEecCCCeEEEEeCC
Q psy11885 103 VEYSDEVNCILTGSWD----------------------TSVKMWDPRSSRCVGN--YTQPD-KVFTMSLCGEKFVVGTAG 157 (327)
Q Consensus 103 l~~~~~~~~l~sgs~d----------------------~~i~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~d 157 (327)
++. .+++.++.|+.+ ..+.+||+++.+.... +..+- ...++...+..++.|+.+
T Consensus 248 ~~~-~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 248 AGI-SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp EEE-ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEEC
T ss_pred EEE-ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeC
Confidence 222 345666666532 2577899987654332 22211 122334456666777754
Q ss_pred C------eEEEEECCCCc
Q psy11885 158 R------KVCIWDLRNMG 169 (327)
Q Consensus 158 ~------~v~iwD~~~~~ 169 (327)
+ .|.++++++.+
T Consensus 327 ~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp GGGCEEEEEEEEEC-CCS
T ss_pred CCCCEeeeEEEEEEcCcE
Confidence 2 35555776654
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=81.27 E-value=8.1 Score=34.52 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=38.1
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEeCCCcee--eeecCc------CCcceEEEEECCC---CCEEEEE
Q psy11885 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQFHR------YDTGITSLCFSYD---GNVLAIA 295 (327)
Q Consensus 238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~--~~~~~~------~~~~v~~l~fspd---g~~la~~ 295 (327)
...++|.|+|+++++-...+.|++++..+++. +..+.. .+.....|+|+|| +.+|-.+
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 45899999999888776556788887554432 222221 2456789999995 4444444
No 331
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=80.91 E-value=25 Score=29.96 Aligned_cols=97 Identities=6% Similarity=-0.028 Sum_probs=57.0
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe-----c-CCCceeeEEEeC----CceEEEEec----C----
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-----A-HSDPVLDCCFQD----AVHSFSGGL----D---- 77 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~-h~~~v~~~~~~~----~~~~~sgs~----D---- 77 (327)
.....|+|.|++ . |+++..++.|++++. +++ .... . .......+++.+ +..++.+.. +
T Consensus 29 ~~P~~ia~~pdG-~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGG-R-YLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETT-E-EEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCC-e-EEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 467899999964 5 555567799999974 444 2111 1 123567888864 355654433 3
Q ss_pred CcEEEEEcCCC--c---ee-e---eec-CCccEEEEEEeCCCCEEEEEE
Q psy11885 78 CTLKMFDFNTQ--T---ET-V---IGT-HDQPIRAVEYSDEVNCILTGS 116 (327)
Q Consensus 78 g~i~vwd~~~~--~---~~-~---~~~-h~~~V~~l~~~~~~~~l~sgs 116 (327)
..|..|+.... . .. + +.. .......|+|.|||.+.++-+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 56777776654 1 11 1 111 111246789999998766643
No 332
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=80.36 E-value=29 Score=32.86 Aligned_cols=103 Identities=14% Similarity=0.230 Sum_probs=58.8
Q ss_pred CcEEEEEECC------CcEEEEECCCCeEEEEecCCCc--eeeEEE-eCCceEEEEecCC--cEEEEEcCCCceeeeec-
Q psy11885 28 NQFLLASSWD------CNVSLYDITNNNLRLKYAHSDP--VLDCCF-QDAVHSFSGGLDC--TLKMFDFNTQTETVIGT- 95 (327)
Q Consensus 28 ~~~l~s~~~d------~~i~iwd~~~~~~~~~~~h~~~--v~~~~~-~~~~~~~sgs~Dg--~i~vwd~~~~~~~~~~~- 95 (327)
+.+++.||.+ +.+.+||..+++-.....-..+ -.+++. .++...+.||.++ .+.+||..++.-..+..
T Consensus 452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 531 (695)
T 2zwa_A 452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK 531 (695)
T ss_dssp TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence 4677778754 3578899988763322111111 123333 3666667777665 68888887765332211
Q ss_pred -----CCccEEEEEEeCC-CCEEEEEEC--C-----CeEEEEeCCCCc
Q psy11885 96 -----HDQPIRAVEYSDE-VNCILTGSW--D-----TSVKMWDPRSSR 130 (327)
Q Consensus 96 -----h~~~V~~l~~~~~-~~~l~sgs~--d-----~~i~lwdl~~~~ 130 (327)
....-.++.+..+ ++.++.|+. + +.+..||+.+++
T Consensus 532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1111223445554 556666765 2 468899998876
No 333
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=80.28 E-value=6.1 Score=36.65 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=39.0
Q ss_pred EeeEEEEecCCCeEEEecCC------------CeEEEEeCCCceeeeecCcC-CcceEEEEECCCCCEEEEEE
Q psy11885 237 PVNAISFHQEYNTFATGGSD------------GYVNIWDGFNKKRLCQFHRY-DTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 237 ~v~~v~~spd~~~lasgs~d------------g~i~iWd~~~~~~~~~~~~~-~~~v~~l~fspdg~~la~~~ 296 (327)
...-|+|+|+|.+++.-..+ ..+.+.+..+++...-+... ...++.++|+||++.|.+.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 35679999999877764332 23444455555543333333 34589999999999998773
No 334
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=79.53 E-value=10 Score=32.48 Aligned_cols=55 Identities=11% Similarity=0.202 Sum_probs=35.7
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEeCCCcee--eeecC---cCCcceEEEEECCC---CCEEEEE
Q psy11885 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKR--LCQFH---RYDTGITSLCFSYD---GNVLAIA 295 (327)
Q Consensus 238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~--~~~~~---~~~~~v~~l~fspd---g~~la~~ 295 (327)
...++|.|+|+++++ ..+|.|++++ +++. +..+. ........|+|+|| +..|.++
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~ 95 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY 95 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence 457999999986665 4569999998 3432 22221 12345789999998 4444444
No 335
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=77.83 E-value=8.4 Score=33.00 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=32.4
Q ss_pred eeEEEEecCCC-eEEEecCCCeEEEEeCCCceee---eec----CcCCcceEEEEECCC
Q psy11885 238 VNAISFHQEYN-TFATGGSDGYVNIWDGFNKKRL---CQF----HRYDTGITSLCFSYD 288 (327)
Q Consensus 238 v~~v~~spd~~-~lasgs~dg~i~iWd~~~~~~~---~~~----~~~~~~v~~l~fspd 288 (327)
...++|.|+|+ ++++ ..+|.|++++.. ++.. ..+ ...+.....|+|+||
T Consensus 20 P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 20 PWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp EEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred cEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence 46799999998 5554 467999999853 3321 111 112345789999996
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=76.96 E-value=40 Score=29.96 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=22.9
Q ss_pred cEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885 99 PIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR 130 (327)
Q Consensus 99 ~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~ 130 (327)
..+.++|.|+|+.+++-...++|++++..+++
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence 45799999999866654433579999875554
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=76.06 E-value=32 Score=28.39 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=50.9
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEe-cCC--CceeeEEEeCCceEEEEec----C---C----cEEEEEcCCCceeeee
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKY-AHS--DPVLDCCFQDAVHSFSGGL----D---C----TLKMFDFNTQTETVIG 94 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~--~~v~~~~~~~~~~~~sgs~----D---g----~i~vwd~~~~~~~~~~ 94 (327)
.+++.|+ ..+..||..+++-.... ... ..-.+++..++...+.|+. + . .+.+||..++.-..+.
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 3455565 67999999988833211 111 1122333345666667773 1 1 2566777665432221
Q ss_pred cCCccE--EEEEEeCCCCEEEEEECC--------CeEEEEeCCCCce
Q psy11885 95 THDQPI--RAVEYSDEVNCILTGSWD--------TSVKMWDPRSSRC 131 (327)
Q Consensus 95 ~h~~~V--~~l~~~~~~~~l~sgs~d--------~~i~lwdl~~~~~ 131 (327)
....+- .+++.. ++..++.|+.+ ..+.+||+.+++.
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W 129 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW 129 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEE
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcE
Confidence 111110 112222 45556666632 4688899987754
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=73.85 E-value=47 Score=31.39 Aligned_cols=106 Identities=10% Similarity=0.109 Sum_probs=59.7
Q ss_pred CCcEEEEEECC----CcEEEEECCCCeEEEEe-c------CCC-ceeeEEEe--CCceEEEEecCC------cEEEEEcC
Q psy11885 27 SNQFLLASSWD----CNVSLYDITNNNLRLKY-A------HSD-PVLDCCFQ--DAVHSFSGGLDC------TLKMFDFN 86 (327)
Q Consensus 27 ~~~~l~s~~~d----~~i~iwd~~~~~~~~~~-~------h~~-~v~~~~~~--~~~~~~sgs~Dg------~i~vwd~~ 86 (327)
++.+++.||.+ ..+.+||..+++-.... . ... .-.+++.. ++...+.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 45677888854 46889998887633222 1 111 11233334 666666776543 46778877
Q ss_pred CCceeeeecCCc--cEEEEEEeCCCCEEEEEECCC--eEEEEeCCCCcee
Q psy11885 87 TQTETVIGTHDQ--PIRAVEYSDEVNCILTGSWDT--SVKMWDPRSSRCV 132 (327)
Q Consensus 87 ~~~~~~~~~h~~--~V~~l~~~~~~~~l~sgs~d~--~i~lwdl~~~~~~ 132 (327)
++.-..+..... .-.+.+...+++.++.|+.++ .+.+||+.+++..
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK 526 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE
Confidence 654332211111 111223324777888887654 6899999887643
No 339
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.74 E-value=4.4 Score=40.98 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=30.6
Q ss_pred EEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeee
Q psy11885 100 IRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT 136 (327)
Q Consensus 100 V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~ 136 (327)
+.+++..++...+++-+.|+++|+|++.+++|+.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3455566777899999999999999999999987754
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=67.61 E-value=51 Score=27.15 Aligned_cols=137 Identities=18% Similarity=0.142 Sum_probs=67.5
Q ss_pred cEEEEEECCCcEEEEECCCCeEEEEe-cC--CCceeeEEEeCCceEEEEec----CC-------cEEEEEcCCCceeeee
Q psy11885 29 QFLLASSWDCNVSLYDITNNNLRLKY-AH--SDPVLDCCFQDAVHSFSGGL----DC-------TLKMFDFNTQTETVIG 94 (327)
Q Consensus 29 ~~l~s~~~d~~i~iwd~~~~~~~~~~-~h--~~~v~~~~~~~~~~~~sgs~----Dg-------~i~vwd~~~~~~~~~~ 94 (327)
.+++.|+. .+..||..+++-.... .. ...-.+++..++...+.|+. ++ .+.++|..++.-..+.
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 45555653 4899999988733221 11 11122333345666667763 12 1666777665433221
Q ss_pred cCCc--cEEEEEEeCCCCEEEEEECC-------CeEEEEeCCCCceeeeeeCCCc---EEEEecCCCeEEEEeC------
Q psy11885 95 THDQ--PIRAVEYSDEVNCILTGSWD-------TSVKMWDPRSSRCVGNYTQPDK---VFTMSLCGEKFVVGTA------ 156 (327)
Q Consensus 95 ~h~~--~V~~l~~~~~~~~l~sgs~d-------~~i~lwdl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------ 156 (327)
.... .-.+++.. +++.++.|+.+ ..+.+||+.+++....-..+.. ...+...+..++.|+.
T Consensus 95 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 95 PLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKC 173 (318)
T ss_dssp CBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCB
T ss_pred CCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCc
Confidence 1100 01112222 45666677654 3578899988764332111211 1122234444555543
Q ss_pred CCeEEEEECCCC
Q psy11885 157 GRKVCIWDLRNM 168 (327)
Q Consensus 157 d~~v~iwD~~~~ 168 (327)
-+.+.+||+.+.
T Consensus 174 ~~~~~~yd~~~~ 185 (318)
T 2woz_A 174 TNRVFIYNPKKG 185 (318)
T ss_dssp CCCEEEEETTTT
T ss_pred cceEEEEcCCCC
Confidence 235889998764
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=66.68 E-value=60 Score=27.66 Aligned_cols=33 Identities=6% Similarity=0.093 Sum_probs=25.5
Q ss_pred ccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCc
Q psy11885 98 QPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR 130 (327)
Q Consensus 98 ~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~ 130 (327)
...+.++|.|+|..+++--..|+|++++...++
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence 346899999999866665558999999876554
No 342
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.04 E-value=13 Score=36.64 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEE
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLK 53 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 53 (327)
..|.+++..++ ..++++-+.|+++|+|++.++++...
T Consensus 236 ~~~~~~~~~~~-~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 236 NTIISMIFLST-YNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp TCEEEEEEETT-TTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEEeecCC-CcEEEEEECCCEEEEEECCCCCeEee
Confidence 45677887774 57999999999999999999986543
No 343
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=62.72 E-value=16 Score=32.62 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=36.5
Q ss_pred eeEEEEecCCC-eEEEecCCCeEEEEeCCCce---eeeecC---------cCCcceEEEEECCC----CCEEEEE
Q psy11885 238 VNAISFHQEYN-TFATGGSDGYVNIWDGFNKK---RLCQFH---------RYDTGITSLCFSYD----GNVLAIA 295 (327)
Q Consensus 238 v~~v~~spd~~-~lasgs~dg~i~iWd~~~~~---~~~~~~---------~~~~~v~~l~fspd----g~~la~~ 295 (327)
...|+|.||++ .|.++...|.|++++..... .+..+. ..+.....|+|+|+ +.+.++-
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 46799999996 45555678999999743221 111111 11456889999997 5544443
No 344
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=62.71 E-value=13 Score=35.26 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=28.5
Q ss_pred EEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeeeeeC
Q psy11885 100 IRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ 137 (327)
Q Consensus 100 V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~ 137 (327)
|.++.+ +...+++-+.|.++|+||+++++++.+..-
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 454444 357999999999999999999998876543
No 345
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=60.16 E-value=79 Score=26.80 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=38.3
Q ss_pred eeEEEE-------ecCCCeEEEecCCCeEEEEeCCCc-eee--eec-CcCCcceEEEEECCCCCEEEEEE
Q psy11885 238 VNAISF-------HQEYNTFATGGSDGYVNIWDGFNK-KRL--CQF-HRYDTGITSLCFSYDGNVLAIAC 296 (327)
Q Consensus 238 v~~v~~-------spd~~~lasgs~dg~i~iWd~~~~-~~~--~~~-~~~~~~v~~l~fspdg~~la~~~ 296 (327)
...++| ..++.++++.-..+.|...++... +.. ..+ ......+..+++.|||.++++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 456777 356777777766778888887643 221 222 22234688999999998776653
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=59.28 E-value=76 Score=26.30 Aligned_cols=126 Identities=8% Similarity=0.013 Sum_probs=64.3
Q ss_pred EEEEecCCCcEEEEEE----CCCcEEEEECCCCeEEEEecCCCceeeEEEeCCceEEEEe-cCCcEEEEEcCCCceeeee
Q psy11885 20 AVKFAPNSNQFLLASS----WDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGG-LDCTLKMFDFNTQTETVIG 94 (327)
Q Consensus 20 ~i~fs~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~sgs-~Dg~i~vwd~~~~~~~~~~ 94 (327)
+..|+++++ +|+-.. .+..|..-++.+.....+..+.. ..+. ..+..++-.+ ....|.+-+++.+....+.
T Consensus 108 ~~~~s~~g~-~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~-~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 108 CIYASLIGN-YIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCN-TSDRYFYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EEEEEEETT-EEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSE-EETTEEEEECTTTCCEEEEETTTTEEEEEE
T ss_pred ccEEEEeCC-EEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEee-EECCEEEEEeCCCceEEEEECCCCCEEEEe
Confidence 346778654 444443 23455555665444333333322 2222 2455555444 3678888888776555443
Q ss_pred cCCccEEEEEEeCCCCEEEEEECC--CeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEEE
Q psy11885 95 THDQPIRAVEYSDEVNCILTGSWD--TSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVG 154 (327)
Q Consensus 95 ~h~~~V~~l~~~~~~~~l~sgs~d--~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
.. ... ..+.|++++|+-.... ..|..-++..... ..+.. .....+++.+..|.-+
T Consensus 184 ~~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~-~~~~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 184 DC--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE-ANIEHYNVYGSLIFYQ 240 (302)
T ss_dssp CS--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC-SCEEEEEEETTEEEEE
T ss_pred CC--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC-CCcceEEECCCEEEEE
Confidence 32 222 2355888887755543 3566666654432 22221 2234466667766544
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=58.04 E-value=76 Score=25.93 Aligned_cols=143 Identities=14% Similarity=0.035 Sum_probs=78.0
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCC-CeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee-ee
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITN-NNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-VI 93 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~-~~ 93 (327)
..|..|+... ...++. . ||.+..|-.+. +++-........|..++--....++- . ||.|..|-.+..... ..
T Consensus 24 ~~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 4688888765 344554 5 99999998654 33211111123455554433333333 4 999999976543211 11
Q ss_pred ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceee-eeeCCCcEEEEecCCCeEEEEeCCCeEEEEECCCC
Q psy11885 94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVG-NYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM 168 (327)
Q Consensus 94 ~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~ 168 (327)
..-...|..++-......++ . |+.|..|-......+. .......+..++......+.-. |+.|..|-....
T Consensus 98 ~~~~~~v~~ia~G~~hs~al--~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYAL--K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYF 169 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTT
T ss_pred cccCCCeEEEECcCCEEEEE--e-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCC
Confidence 11234677777655433333 4 8999999865422111 1112234555555444444445 899999976543
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=57.88 E-value=93 Score=28.74 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=46.3
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCC------CeE-------EEEecCCCceeeEEEe-CCceEEEE-ecCCcEE
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITN------NNL-------RLKYAHSDPVLDCCFQ-DAVHSFSG-GLDCTLK 81 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~------~~~-------~~~~~h~~~v~~~~~~-~~~~~~sg-s~Dg~i~ 81 (327)
+...+.++|++..++++|..+.++.++|.+. +++ .....-.......+|. ++ .+++. -.|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEE
Confidence 3456899997655555666789999999873 211 1111233456777884 55 56544 5799999
Q ss_pred EEEcCC
Q psy11885 82 MFDFNT 87 (327)
Q Consensus 82 vwd~~~ 87 (327)
.|+++.
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999874
No 349
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.15 E-value=25 Score=33.32 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=27.3
Q ss_pred CeeEEEEecCCCcEEEEEECCCcEEEEECCCCeEEEEe
Q psy11885 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY 54 (327)
Q Consensus 17 ~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 54 (327)
-|.++.+. ..++++-+.|+++|+||+.++++....
T Consensus 223 ~Is~~~~~---~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLFH---ERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEET---TTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEeccC---CcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 45655554 469999999999999999999865443
No 350
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.25 E-value=14 Score=37.25 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=29.2
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEeCCCceeeee
Q psy11885 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQ 272 (327)
Q Consensus 238 v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~ 272 (327)
+.+++..++..+++|-+.|+++|||++.+++.+.+
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 44566778888999999999999999999877654
No 351
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=44.03 E-value=1.5e+02 Score=25.06 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=37.9
Q ss_pred eeEEEEec-------CCCeEEEecCCCeEEEEeCCCceeeee--c-CcCCcceEEEEECCCCCEEEEE
Q psy11885 238 VNAISFHQ-------EYNTFATGGSDGYVNIWDGFNKKRLCQ--F-HRYDTGITSLCFSYDGNVLAIA 295 (327)
Q Consensus 238 v~~v~~sp-------d~~~lasgs~dg~i~iWd~~~~~~~~~--~-~~~~~~v~~l~fspdg~~la~~ 295 (327)
+..++|-. ++++|++.-..+.|...++..++.... + ......+..|++.|||.++++.
T Consensus 273 p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 273 VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 45567753 466777666678888777766543322 2 2223468899999999977754
No 352
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=39.38 E-value=2.5e+02 Score=29.40 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=41.7
Q ss_pred EeCCCCEEEEEECCCeEEEEeCCCCceeeeeeCCCcEEEEecC-CCeEEEEeCCCeEEEEECCC
Q psy11885 105 YSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLC-GEKFVVGTAGRKVCIWDLRN 167 (327)
Q Consensus 105 ~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~v~iwD~~~ 167 (327)
.+|..+.++-- ...++++||+++...++.+..+..+.-|.+- .+.++.. .+..|.-|++..
T Consensus 73 MnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lV-T~~aVyHW~~~~ 134 (1630)
T 1xi4_A 73 MNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV-TDNAVYHWSMEG 134 (1630)
T ss_pred cCCCcceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEE-cCCeEEEeccCC
Confidence 34554444433 3678999999998888887777677777764 4444444 356899999964
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=37.26 E-value=1.7e+02 Score=23.81 Aligned_cols=142 Identities=12% Similarity=0.032 Sum_probs=75.6
Q ss_pred CCeeEEEEecCCCcEEEEEECCCcEEEEECCC-CeEEEEecCCCceeeEEEeCCceEEEEecCCcEEEEEcCCCcee-ee
Q psy11885 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITN-NNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-VI 93 (327)
Q Consensus 16 ~~I~~i~fs~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~-~~ 93 (327)
..|..|+... ...++. . ||.|..|-.+. +++-.-..-...|..++--.. +.+.-. ||.|..|-.+..... ..
T Consensus 63 ~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~-hs~al~-~G~v~~wG~n~~gqlg~~ 136 (282)
T 3qhy_B 63 SGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW-ASYALK-DGKVIAWGDDSDGQTTVP 136 (282)
T ss_dssp SCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT-EEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred CCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC-EEEEEe-CCeEEEecCCCCCcCCCC
Confidence 3677787765 345555 5 99999998654 332111111234555543333 333344 999999976543211 11
Q ss_pred ecCCccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee-eeCCCcEEEEecCCCeEEEEeCCCeEEEEECCC
Q psy11885 94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN-YTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRN 167 (327)
Q Consensus 94 ~~h~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~ 167 (327)
......|..++-......++ . |+.|..|-......+.. ......+..++......+.- .++.|..|-...
T Consensus 137 ~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 137 AEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp GGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCT
T ss_pred ccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCC
Confidence 11234577666544332232 3 79999998654221111 11123455555554544444 689999997543
No 354
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=35.72 E-value=2.8e+02 Score=26.03 Aligned_cols=252 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCceeeEEEeCCceEEEEecCCcEEEEEcCCCceeeeecC--CccEEEEEEeCCCCEEEEEECCCeEEEEeCCCCceeee
Q psy11885 57 SDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTH--DQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN 134 (327)
Q Consensus 57 ~~~v~~~~~~~~~~~~sgs~Dg~i~vwd~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~sgs~d~~i~lwdl~~~~~~~~ 134 (327)
+..|.++.--....+-.|..+| +..||-..-........ ...|.++....++.+-+.. +..+..||..+.+-...
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT--~~Gl~~yd~~~~~f~~~ 97 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGT--DNGILVYNYRADRYEQP 97 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEE--TTEEEEEETTTTEECCC
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEe--CCCeEEEeCCCCEEECc
Q ss_pred eeC-CCcEEEEecCCCeEEEEeCCCeEEEEECCCCcccee-eecccceeeeEEeEEeeCCCceEEEeecCeEEEEEccCC
Q psy11885 135 YTQ-PDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQ-RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTG 212 (327)
Q Consensus 135 ~~~-~~~~~~~~~~~~~~~~~~~d~~v~iwD~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 212 (327)
... ...+.++......+.+++.+ -+..+|..+.+.... .....++.......+......+.+++..|-...
T Consensus 98 ~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~------ 170 (758)
T 3ott_A 98 ETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRY------ 170 (758)
T ss_dssp SCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEE------
T ss_pred ccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhC------
Q ss_pred cccccceeeeeeeeeccCCeeeEEEeeEEEEecCCCeEEEecCCCeEEEEeCCCceeeeecCcCCcceEEEEECCCCCEE
Q psy11885 213 PEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVL 292 (327)
Q Consensus 213 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~spd~~~lasgs~dg~i~iWd~~~~~~~~~~~~~~~~v~~l~fspdg~~l 292 (327)
......+...............|.++...+++..|-.|. ++-+..+|..+++...........|.++...++|.+.
T Consensus 171 ---~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 246 (758)
T 3ott_A 171 ---IPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-EGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL 246 (758)
T ss_dssp ---ETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-EEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE
T ss_pred ---ccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE-CCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE
Q ss_pred EEEEccccccCCCCC--------------CCCCCcEEEEEccccc
Q psy11885 293 AIACSYNYELETPPD--------------PIPPNNIFIRHVTDQE 323 (327)
Q Consensus 293 a~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 323 (327)
+.. ..++.+..+.. .++.+.|+-+..-+++
T Consensus 247 igT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g 290 (758)
T 3ott_A 247 AGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH 290 (758)
T ss_dssp EEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC
T ss_pred EEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC
No 355
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=22.48 E-value=3.2e+02 Score=22.37 Aligned_cols=85 Identities=16% Similarity=0.052 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCceeeeecCCccEEEEEEeCCCCEEEEEE----CCCeEEEEeCCCCceeeeeeCCCcEEEEecCCCeEEE
Q psy11885 78 CTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGS----WDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVV 153 (327)
Q Consensus 78 g~i~vwd~~~~~~~~~~~h~~~V~~l~~~~~~~~l~sgs----~d~~i~lwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (327)
..|+..+++......+... .. ..++++++.|+-.. ....|..-++..... ..+..... ..+++.++.|+-
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~--~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~-~~~~~~g~~iy~ 161 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD--PC--IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL-FTCNTSDRYFYY 161 (302)
T ss_dssp EEEEEEETTSCCCEEEECS--CE--EEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC-CCSEEETTEEEE
T ss_pred CeEEEEeCCCCcceEeecC--Cc--cEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc-eEeeEECCEEEE
Confidence 4677777776654444322 22 25667888887655 344566666654332 22322211 334566777665
Q ss_pred EeC-CCeEEEEECCCC
Q psy11885 154 GTA-GRKVCIWDLRNM 168 (327)
Q Consensus 154 ~~~-d~~v~iwD~~~~ 168 (327)
.+. ...|.+-++...
T Consensus 162 t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 162 NNPKNGQLYRYDTASQ 177 (302)
T ss_dssp ECTTTCCEEEEETTTT
T ss_pred EeCCCceEEEEECCCC
Confidence 544 457777777654
Done!