RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11885
(327 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 112 bits (281), Expect = 7e-29
Identities = 65/292 (22%), Positives = 119/292 (40%), Gaps = 29/292 (9%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN-LRLKYAHSDPVLDCCFQDAVHS-F 72
G+T V F+P+ L S D + ++D+ LR H+ PV D
Sbjct: 9 TGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 73 SGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC 131
SG D T++++D T + H + +V +S + + + S D ++K+WD + +C
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127
Query: 132 VGNYT-QPDKVFTMSLCGEKFVVGTAG--RKVCIWDLRNMGYIMQRRESSLKFQT---RC 185
+ D V +++ + V ++ + +WDLR + L T
Sbjct: 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT-----LTGHTGEVNS 182
Query: 186 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245
+ P+ + + SS +G + L TG K + H VN+++F
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTG----KCLGTLRGHE---------NGVNSVAFSP 229
Query: 246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
+ A+G DG + +WD + + + +TSL +S DG L + S
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL-ASGS 280
Score = 95.9 bits (239), Expect = 8e-23
Identities = 45/255 (17%), Positives = 92/255 (36%), Gaps = 64/255 (25%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF-QDAVHSF 72
+++V F+P+ + L +SS D + ++D+ H+D V F D
Sbjct: 93 TSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151
Query: 73 SGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC 131
S D T+K++D T + + H + +V +S + +L+ S D ++K+WD + +C
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 132 VGNYT-QPDKVFTMSLCGEK--FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188
+G + V +++ + G+ + +WDLR C++
Sbjct: 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT---------------GECVQT 256
Query: 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN 248
V ++++ +
Sbjct: 257 LSGHTN------------------------------------------SVTSLAWSPDGK 274
Query: 249 TFATGGSDGYVNIWD 263
A+G +DG + IWD
Sbjct: 275 RLASGSADGTIRIWD 289
Score = 75.1 bits (185), Expect = 2e-15
Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 28/210 (13%)
Query: 96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWD---PRSSRCVGNYTQPDKVFTMSLCGEKFV 152
H + V +S + + TGS D ++K+WD R + +T P + S G
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 153 VGTAGRKVCIWDLRNMGYIMQRRESSL---KFQTRCIKCFPNKQGYVLSSIE-GRAAVEY 208
G++ + + +WDL +L + P+ + + SS V
Sbjct: 68 SGSSDKTIRLWDLET-----GECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWD 121
Query: 209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGS-DGYVNIWDGFNK 267
++TG K + H D VN+++F + TF S DG + +WD
Sbjct: 122 VETG----KCLTTLRGH---TD------WVNSVAFSPD-GTFVASSSQDGTIKLWDLRTG 167
Query: 268 KRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
K + + + S+ FS DG L + S
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 96.3 bits (238), Expect = 4e-22
Identities = 67/297 (22%), Positives = 121/297 (40%), Gaps = 27/297 (9%)
Query: 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-HSDPVLDCCFQ--DA 68
+ +T++ F+P+ SS D + L+D+ A H+DPV F
Sbjct: 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211
Query: 69 VHSFSGGLDCTLKMFDFNT---QTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
+ SG D T++++D +T T+ G D + + S + + + +GS D ++++WD
Sbjct: 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF--SPDGSLLASGSSDGTIRLWD 269
Query: 126 PRSSRCVGNYTQP--DKVFTMSL--CGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF 181
RSS + V +++ G+ G++ V +WDL + +
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329
Query: 182 QTRCIKCFPNKQGYVLS-SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNA 240
+ P+ V S +G + L TG ++ +E V +
Sbjct: 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT--------------LEGHSNVLS 375
Query: 241 ISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
+SF + ++G +DG V +WD L + + +TSL FS DG LA S
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432
Score = 93.2 bits (230), Expect = 4e-21
Identities = 64/311 (20%), Positives = 118/311 (37%), Gaps = 31/311 (9%)
Query: 5 KTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY---AHSDPVL 61
L ED IT++ F+P+ + LL+ S D + L+D+ N +K H V
Sbjct: 55 DLSSLLLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113
Query: 62 DCCFQ----DAVHSFSGGLDCTLKMFDFNTQTETV--IGTHDQPIRAVEYS-DEVNCILT 114
+++ S LD T+K++D +T + + + H + + ++ +S D
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173
Query: 115 GSWDTSVKMWDPRSSRCVGNYTQPDKVFT----MSLCGEKFVVGTAGRKVCIWDLRNMGY 170
S D ++K+WD R+ + + + G G++ + +WDL
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233
Query: 171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKED 230
+ + F + G +L+S + D + H
Sbjct: 234 LRSTLSG---HSDSVVSSF-SPDGSLLASGSSDGTIRLWDL-RSSSSLLRTLSGHS---- 284
Query: 231 GIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG--ITSLCFSYD 288
V +++F + A+G SDG V +WD K L ++SL FS D
Sbjct: 285 -----SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 289 GNVLAIACSYN 299
G++L S +
Sbjct: 340 GSLLVSGGSDD 350
Score = 81.3 bits (199), Expect = 5e-17
Identities = 54/282 (19%), Positives = 110/282 (39%), Gaps = 26/282 (9%)
Query: 2 VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKYAHSDP 59
+ + S + D ++++ F+P+ + + S D + L+D++ L HSD
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 60 VLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETV--IGTHDQPIRAVEYSDEVNCILTGSW 117
V+ D SG D T++++D + + + + H + +V +S + + +GS
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304
Query: 118 DTSVKMWDPRSSRCVGNYTQPD-----KVFTMSLCGEKFVVGTAGRK-VCIWDLRNMGYI 171
D +V++WD + + + + T + S G V G + + +WDLR +
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364
Query: 172 MQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDG 231
S + P+ + S +G + L TG + H
Sbjct: 365 KTLEGHS---NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG----SLLRNLDGH------ 411
Query: 232 IEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF 273
V ++ F + + A+G SD + +WD + F
Sbjct: 412 ---TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
Score = 51.2 bits (121), Expect = 4e-07
Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFS 73
E ++++ F+P+ + + S D + L+D+ VL F D S
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSS 387
Query: 74 GGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
G D T++++D +T + + H + ++++S + + +GS D ++++WD ++S
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447
Query: 133 GNYTQPDKVFT 143
+++ KV
Sbjct: 448 VSFSPDGKVLA 458
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 38.9 bits (91), Expect = 8e-05
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWD 263
PV +++F + N A+G DG V +WD
Sbjct: 13 PVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 38.5 bits (90), Expect = 1e-04
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
+ H P+ +V +S + N + +GS D +V++WD
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 31.2 bits (71), Expect = 0.055
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYD 44
+T+V F+P+ N L + S D V ++D
Sbjct: 11 TGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39
Score = 30.0 bits (68), Expect = 0.11
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 YAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFD 84
H+ PV F D SG D T++++D
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 37.3 bits (87), Expect = 3e-04
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 92 VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
+ H P+ +V +S + + +GS D ++K+WD
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 37.3 bits (87), Expect = 4e-04
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWD 263
PV +++F + A+G DG + +WD
Sbjct: 14 PVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 30.4 bits (69), Expect = 0.10
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYD 44
+T+V F+P+ +L + S D + L+D
Sbjct: 12 TGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40
Score = 28.4 bits (64), Expect = 0.51
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 55 AHSDPVLDCCF-QDAVHSFSGGLDCTLKMFD 84
H+ PV F D + SG D T+K++D
Sbjct: 10 GHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 25.4 bits (56), Expect = 6.3
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 266 NKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
+ + L + +TS+ FS DG LA
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSD 32
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 38.3 bits (89), Expect = 0.004
Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 24/181 (13%)
Query: 12 SPP-----EDGITAVKFAPNSNQFLLASSWDCNVSLYDI--------TNNNLRLKYAHSD 58
+PP E I V F P Q L +S D + + I ++ + H+
Sbjct: 67 NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK 126
Query: 59 PVLDCCFQDAVHSF--SGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTG 115
V F + + S G D + ++D VI H I ++E++ + + + T
Sbjct: 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT 186
Query: 116 SWDTSVKMWDPRSSR--CVGNYTQPDKVFTMSLCGEKFVVGTAG------RKVCIWDLRN 167
S D + + DPR K K ++ T G R++ +WD R
Sbjct: 187 SKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246
Query: 168 M 168
M
Sbjct: 247 M 247
>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional.
Length = 989
Score = 35.1 bits (80), Expect = 0.055
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDC--CFQ 66
++ +P D + +F P++ + + S +D Y H +L C Q
Sbjct: 623 AMQAPSGDNVQPWRFVPHATGLHIHLDRQADGSFFD---------YRHVASLLACGAAVQ 673
Query: 67 DAVH-SFSGGLDCTLKMFDFNTQTETVIGTHDQPI 100
+AV+ S S GLD TL +F T+ + V H P+
Sbjct: 674 NAVYASGSAGLDATLSLFPDATKPDRVASLHCTPL 708
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 32.4 bits (73), Expect = 0.42
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 73 SGGLDCTLKMFDF-NTQTETVIGTHDQPIRAVEYSDEVNCIL-TGSWDTSVKMWDPRSSR 130
S + ++++D +Q T + H++ + +++YS +L +GS D SVK+W
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609
Query: 131 CVGNYTQPDKVFTM---SLCGEKFVVGTAGRKVCIWDLRN 167
+G + + S G G+A KV +DLRN
Sbjct: 610 SIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649
Score = 29.3 bits (65), Expect = 3.2
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL--KYAHSDPVLDCCFQDAVHSFSGG 75
I V+F S + L S D V YD+ N L L HS V F D+ S
Sbjct: 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSS 679
Query: 76 LDCTLKMFDFNTQTETVIGTHDQPIRA 102
D TLK++D + ++ G ++ P+ +
Sbjct: 680 TDNTLKLWDLSM---SISGINETPLHS 703
>gnl|CDD|233912 TIGR02535, hyp_Hser_kinase, proposed homoserine kinase. The genes
in this family are largely adjacent to genes involved in
the biosynthesis of threonine (aspartate kinase,
homoserine dehydrogenase and threonine synthase) in
genomes which are lacking any other known homoserine
kinase, and in which the presence of a homoserine kinase
would indicate a complete pathway for the biosynthesis
of threonine. These genes are a member of the (now
subfamily, formerly equivalog) TIGR00306 model
describing the archaeal form of
2,3-bisphosphoglycerate-independent phosphoglycerate
mutase. All of these are members of a superfamily
(pfam01676) of metalloenzyme also including
phosphopentomutase alkaline phosphatases and sulfatases.
The proposal that this family encodes a kinase is based
on analogy to phosphomutases which are intramolecular
phosphotransferases. A mutase active site could evolve
to bring together homoserine and a phosphate donor such
as phosphoenolpyruvate resulting in a kinase activity.
Length = 396
Score = 29.7 bits (67), Expect = 2.1
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 29/128 (22%)
Query: 201 EGRAAVEYLDTGPEMQKMKYAFKCHRIK-EDGIEKIYPVNAISFHQEYNTFATGGSDGYV 259
GRA +E G ++ + AF+C+ + EDG K + IS S+
Sbjct: 73 TGRAPLEAASIGVDLAPDEVAFRCNLVTVEDGKMKDFSAGHIS------------SEEAA 120
Query: 260 NIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYNY-ELETPPDPIPPNNIFIRH 318
+ + NK+ + R+ G+ SY N+L I + EL PP++I
Sbjct: 121 TLIEDLNKELGSERVRFYPGV-----SYR-NLLVIKGDGDRAELRC----TPPHDI---- 166
Query: 319 VTDQETKP 326
T +E
Sbjct: 167 -TGKEVSK 173
>gnl|CDD|218422 pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This
family consists of several bacterial proteins which are
closely related to NAD-glutamate dehydrogenase found in
Streptomyces clavuligerus. Glutamate dehydrogenases
(GDHs) are a broadly distributed group of enzymes that
catalyze the reversible oxidative deamination of
glutamate to ketoglutarate and ammonia.
Length = 1526
Score = 29.8 bits (68), Expect = 2.5
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 7/25 (28%)
Query: 239 NAISFHQEYN-----TFATGGSDGY 258
NAI+ EY FA+GGS GY
Sbjct: 846 NAIA--AEYGFWLGDAFASGGSVGY 868
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 29.5 bits (66), Expect = 2.7
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 238 VNAISFH-QEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC 296
++ I ++ Y + G D +VNIWD N+KR Q + ++SL ++ GN+L+ C
Sbjct: 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC 186
>gnl|CDD|116470 pfam07858, LEH, Limonene-1,2-epoxide hydrolase catalytic domain.
Epoxide hydrolases catalyze the hydrolysis of epoxides
to corresponding diols, which is important in
detoxification, synthesis of signal molecules, or
metabolism. Limonene-1,2- epoxide hydrolase (LEH)
differs from many other epoxide hydrolases in its
structure and its novel one-step catalytic mechanism.
Its main fold consists of a six-stranded mixed
beta-sheet, with three N-terminal alpha helices packed
to one side to create a pocket that extends into the
protein core. A fourth helix lies in such a way that it
acts as a rim to this pocket. Although mainly lined by
hydrophobic residues, this pocket features a cluster of
polar groups that lie at its deepest point and
constitute the enzyme's active site.
Length = 125
Score = 27.8 bits (62), Expect = 3.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 197 LSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI 232
L +I GR L M FK HRI DG
Sbjct: 38 LPTIHGRDEAIALLRRMSMSIAAVEFKIHRIAADGG 73
>gnl|CDD|191430 pfam06021, Gly_acyl_tr_N, Aralkyl acyl-CoA:amino acid
N-acyltransferase. This family consists of several
mammalian specific aralkyl acyl-CoA:amino acid
N-acyltransferase (glycine N-acyltransferase) proteins
EC:2.3.1.13.
Length = 205
Score = 28.6 bits (64), Expect = 4.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 176 ESSLKFQTRCIKCFPN 191
E SL+F RCI+ FP+
Sbjct: 190 ERSLRFIERCIQDFPS 205
>gnl|CDD|235662 PRK05986, PRK05986, cob(I)alamin adenolsyltransferase/cobinamide
ATP-dependent adenolsyltransferase; Validated.
Length = 191
Score = 27.8 bits (63), Expect = 6.6
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 200 IEGRAA----VEYLDTGPEMQKMKYAFKCHRIKEDGIE 233
I GR A +E D EM+ +K+ F + GIE
Sbjct: 153 ITGRGAPRELIEAADLVTEMRPVKHPFDAGVKAQKGIE 190
>gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria, while some of them are also found in
Archaea and eukaryotes.
Length = 475
Score = 27.6 bits (62), Expect = 9.7
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 42/116 (36%)
Query: 149 EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY 208
E VVG GR V I D++ P+ +G+V+
Sbjct: 292 EPPVVGLIGRVVPIKDIKTFIRAAAIVRKK----------IPDAEGWVI----------- 330
Query: 209 LDTGPEMQKMKYAFKCHR-IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD 263
GP + +YA +C ++ G+E + F G+ N+ +
Sbjct: 331 ---GPTDEDPEYAEECRELVESLGLED-----NVKFT------------GFQNVKE 366
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.432
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,176,712
Number of extensions: 1467195
Number of successful extensions: 1007
Number of sequences better than 10.0: 1
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 32
Length of query: 327
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 230
Effective length of database: 6,635,264
Effective search space: 1526110720
Effective search space used: 1526110720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)