RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11885
(327 letters)
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 124 bits (310), Expect = 1e-33
Identities = 66/312 (21%), Positives = 125/312 (40%), Gaps = 23/312 (7%)
Query: 10 LNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN----LRLKYAHSDPVLDCCF 65
+ P+D I+ +K P+ + LL +SWD ++++Y L + P+L C F
Sbjct: 6 IEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 66 QD----AVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSV 121
D ++ + + + + + + ++ SWD +
Sbjct: 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 122 KMWDPRSSRC---------VGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNM--GY 170
++ DPR+ N +K+FTM + +VG +V + L
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184
Query: 171 IMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM--QKMKYAFKCHRIK 228
++GY SSI+GR AVE+ D + ++AF+CHR+
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 229 EDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYD 288
YPVN+I F + T GSDG ++ W+ +K++ F +++ + + +
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACS 303
Query: 289 GNVLAIACSYNY 300
N+L +A S +
Sbjct: 304 DNILCLATSDDT 315
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 87.1 bits (214), Expect = 3e-20
Identities = 48/296 (16%), Positives = 99/296 (33%), Gaps = 16/296 (5%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQDAVHSFS 73
+T V F P + ++++S D + ++D + H+D V D F + +
Sbjct: 17 RSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75
Query: 74 GGLDCTLKMFDFNTQTETV--IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC 131
E + + HD + +V + I++ S D ++KMW+ ++ C
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135
Query: 132 VGNY---TQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188
V + + ++ + G + + V +W + + RE + CI
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH--RHVVECISW 193
Query: 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY-------PVNAI 241
P +S G + GP + + V +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253
Query: 242 SFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
FH + D + +WD NK+ + + ++ +TSL F +
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Score = 61.3 bits (147), Expect = 2e-11
Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 14/207 (6%)
Query: 96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCGEKFVVG 154
H P+ V + + +++ S D ++K+WD + D V +S ++
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75
Query: 155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE 214
+ + I G+ R + PN V +S + + + T
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--- 132
Query: 215 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 274
F HR V + +Q+ A+ +D V +W K+ +
Sbjct: 133 -GYCVKTFTGHR---------EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
Query: 275 RYDTGITSLCFSYDGNVLAIACSYNYE 301
+ + + ++ + + +I+ + E
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSE 209
Score = 41.7 bits (96), Expect = 7e-05
Identities = 12/82 (14%), Positives = 24/82 (29%)
Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC 296
PV + FH ++ + D + +WD + + + F + G +LA
Sbjct: 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78
Query: 297 SYNYELETPPDPIPPNNIFIRH 318
+ H
Sbjct: 79 ADMTIKLWDFQGFECIRTMHGH 100
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 81.7 bits (200), Expect = 4e-18
Identities = 52/292 (17%), Positives = 102/292 (34%), Gaps = 23/292 (7%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCF-QDAVHSF 72
I A+ + + ++ L+++S D + ++D T N + S V+ C + +
Sbjct: 55 LAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 73 SGGLDCTLKMFDFNTQTETVIGTHDQP----IRAVEYSDEVNCILTGSWDTSVKMWDPRS 128
GGLD +++ T+ V + + + + N I+T S DT+ +WD +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 129 SRCVG---NYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRC 185
+ +T +++ FV G +WD+R +
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH--ESDINA 231
Query: 186 IKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245
I FPN + S + + L E+ + + ++SF +
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-----------GITSVSFSK 280
Query: 246 EYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
G D N+WD R +D ++ L + DG +A
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Score = 60.9 bits (146), Expect = 4e-11
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 6/117 (5%)
Query: 14 PEDGITAVKFAPNSNQFLLASSWDCNVSL---YDITNNNLRLKYAHSDPVLDCCF-QDAV 69
E I A+ F PN N S D L + F +
Sbjct: 225 HESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 70 HSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
+G D ++D V+ HD + + +D+ + TGSWD+ +K+W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 57.1 bits (136), Expect = 7e-10
Identities = 37/246 (15%), Positives = 68/246 (27%), Gaps = 13/246 (5%)
Query: 56 HSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCIL 113
H + + D+ S D L ++D T + I + Y+ N +
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 114 TGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQ 173
G D +++ ++ ++ T L +F+ + I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 174 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233
++++ + + G + F H
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE------- 226
Query: 234 KIYPVNAISFHQEYNTFATGGSDGYVNI--WDGFNKKRLCQFHRYDTGITSLCFSYDGNV 291
+NAI F N FATG D + + GITS+ FS G +
Sbjct: 227 --SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 292 LAIACS 297
L
Sbjct: 285 LLAGYD 290
Score = 44.3 bits (103), Expect = 9e-06
Identities = 12/82 (14%), Positives = 27/82 (32%)
Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC 296
+ A+ + + + DG + IWD + ++ + + + ++ GN +A
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 297 SYNYELETPPDPIPPNNIFIRH 318
N N R
Sbjct: 117 LDNICSIYNLKTREGNVRVSRE 138
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 75.2 bits (183), Expect = 8e-16
Identities = 53/319 (16%), Positives = 108/319 (33%), Gaps = 40/319 (12%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-------------------A 55
+ VKF+ + LA+ + +Y +++ +L + +
Sbjct: 62 TSVVCCVKFSNDGE--YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119
Query: 56 HSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSD-EVNCIL 113
+ CF D +G D ++++D + +I + + ++
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179
Query: 114 TGSWDTSVKMWDPRSSRCVGNYTQPDKVFTM---SLCGEKFVVGTAGRKVCIWDLRNMGY 170
+GS D +V++WD R+ +C + D V T+ G+ G+ R V +WD G+
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GF 238
Query: 171 IMQRRESSLKFQT------RCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224
+++R +S + T + + Q V S++ + L K
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC 284
K V +++ Q +G D V WD + L + + S+
Sbjct: 299 TCEVTYIGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 357
Query: 285 ------FSYDGNVLAIACS 297
+ NV A
Sbjct: 358 VANGSSLGPEYNVFATGSG 376
Score = 68.7 bits (166), Expect = 1e-13
Identities = 48/271 (17%), Positives = 88/271 (32%), Gaps = 29/271 (10%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ-DAVHSFS 73
+ I +V F+P+ + + + H + + S
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 74 GGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEV-NCILTGSWDTSVKMWDPRSSRCV 132
G D T++++D T ++ + + + V S I GS D +V++WD + V
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 133 GNYTQPDKVFT----------MSLCGEKFVVGTAGRKVCIWDLRN----------MGYIM 172
++ T + G+ V G+ R V +W+L+N
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 173 QRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGI 232
+ K + N + + S + +G + HR + +
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG----NPLLMLQGHR---NSV 353
Query: 233 EKIYPVNAISFHQEYNTFATGGSDGYVNIWD 263
+ N S EYN FATG D IW
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
Score = 61.7 bits (148), Expect = 3e-11
Identities = 36/291 (12%), Positives = 94/291 (32%), Gaps = 38/291 (13%)
Query: 39 NVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-------- 90
N +L + L H+ V F + + G + T +++ + +
Sbjct: 44 NPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDS 103
Query: 91 -----------TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD 139
+ + D IR+V +S + + TG+ D +++WD + + V +
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163
Query: 140 KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS- 198
+ +G + ++ S++ + P Y+ +
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 223
Query: 199 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGY 258
S++ V +TG ++++ + +D V ++ F ++ + +G D
Sbjct: 224 SLDRAVRVWDSETGFLVERLDSENESGTGHKD------SVYSVVFTRDGQSVVSGSLDRS 277
Query: 259 VNIWDGFNKKR------------LCQFHRYDTGITSLCFSYDGNVLAIACS 297
V +W+ N + + + S+ + + +
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328
Score = 59.4 bits (142), Expect = 1e-10
Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 31/184 (16%)
Query: 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--------AHSDPVLDCCF-Q 66
DG+T V +P +++ A S D V ++D L + H D V F +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264
Query: 67 DAVHSFSGGLDCTLKMFDFNT-------------QTETVIGTHDQPIRAVEYSDEVNCIL 113
D SG LD ++K+++ E H + +V + IL
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 324
Query: 114 TGSWDTSVKMWDPRSSRCVGNYT---------QPDKVFTMSLCGEKFVVGTAGRKVCIWD 164
+GS D V WD +S + ++ F G+ K IW
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
Query: 165 LRNM 168
+ +
Sbjct: 385 YKKI 388
Score = 52.1 bits (123), Expect = 3e-08
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYA-------------HSDPVL 61
+D + +V F + Q +++ S D +V L+++ N N + H D VL
Sbjct: 254 KDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 62 DCCF-QDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEV------NCIL 113
Q+ + SG D + +D + ++ H + +V ++ N
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 114 TGSWDTSVKMWDPR 127
TGS D ++W +
Sbjct: 373 TGSGDCKARIWKYK 386
Score = 30.2 bits (66), Expect = 0.35
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 244 HQEYNTFATGGSDGYVNIWDGFNKKR----LCQFHRYDTGITSLCFSYDGNVLAIAC 296
Q ++ Y +++ + L + + + + + FS DG LA C
Sbjct: 25 SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC 81
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 68.0 bits (164), Expect = 2e-13
Identities = 27/254 (10%), Positives = 81/254 (31%), Gaps = 16/254 (6%)
Query: 56 HSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVIGT---HDQPIRAVEYSDEVNC 111
+P+ + +D + + +++ + + H+ + V+++ + N
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 112 ILTGSWDTSVKMWDPRSSRCV-----GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLR 166
I+T D + +W + + + + +KF VG+ R + I
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 167 NMG--YIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224
++ + + ++ + PN S + + + ++
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 225 HRI-----KEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG 279
++ + V+ + F + A D V + D K +
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 280 ITSLCFSYDGNVLA 293
+ ++ F + +++A
Sbjct: 246 LLAVTFITESSLVA 259
Score = 48.7 bits (114), Expect = 4e-07
Identities = 8/61 (13%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWD--GFNKKRLCQFHRYDTGITSLCFSYDGNVLAI 294
P++ +++++ A ++ V+I++ G ++ + ++ +T + ++ D N +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 295 A 295
Sbjct: 69 C 69
Score = 41.4 bits (95), Expect = 1e-04
Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 6/112 (5%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDITN--NNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTL 80
+ L+A+ DC L+ + L P LD
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 308
Query: 81 KMFDFNTQTETVIGTHDQPIRAVEYS----DEVNCILTGSWDTSVKMWDPRS 128
+ H + + + + T D + +WD RS
Sbjct: 309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
Score = 35.6 bits (80), Expect = 0.007
Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 7/169 (4%)
Query: 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHS 71
S + V F+ N ++ S + + + P+L F
Sbjct: 198 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL 257
Query: 72 FSGGLDCTLKMFDFNTQTETV-IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSR 130
+ G DC +F +++ + G + + D ++
Sbjct: 258 VAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 317
Query: 131 CVGNYTQPDKVFTMSLC------GEKFVVGTAGRKVCIWDLRNMGYIMQ 173
+ + V +S+ +F + IWD+R++ ++
Sbjct: 318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 366
Score = 34.1 bits (76), Expect = 0.018
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 35 SWDCNVSLYDITNNNLRLKYAHSDPVLDCCF----QDAVHSF-SGGLDCTLKMFDFNTQT 89
+ D S L H + V + F + G+D + ++D +
Sbjct: 303 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
Query: 90 ETVIG 94
+
Sbjct: 363 SALKD 367
Score = 32.5 bits (72), Expect = 0.055
Identities = 23/188 (12%), Positives = 42/188 (22%), Gaps = 22/188 (11%)
Query: 82 MFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKV 141
+ + + V +S + + S D++V + D V
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 142 FTMSLC--GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS 199
V ++ + + +
Sbjct: 246 LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS-----------FGGRLDVPKQSSQRG 294
Query: 200 IEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT----FATGGS 255
+ R + LD K V+ IS F T G
Sbjct: 295 LTARERFQNLDK-----KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 349
Query: 256 DGYVNIWD 263
DG ++IWD
Sbjct: 350 DGGMSIWD 357
Score = 26.0 bits (55), Expect = 7.1
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 280 ITSLCFSYDGNVLAIACS 297
I+ ++ D +AI +
Sbjct: 10 ISCHAWNKDRTQIAICPN 27
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 66.4 bits (160), Expect = 5e-13
Identities = 46/249 (18%), Positives = 81/249 (32%), Gaps = 15/249 (6%)
Query: 20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCT 79
V+ + +++ S D + ++DI + C D SG D
Sbjct: 99 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 158
Query: 80 LKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QP 138
+K++D T+T D +++GS DTS+++WD + C+ T
Sbjct: 159 VKVWDPETETCLHTLQGHTNRVYSLQFDG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 217
Query: 139 DKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS 198
M L V G A V IWD++ + + + F + S
Sbjct: 218 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-VITS 276
Query: 199 SIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDG- 257
S +G + L TG ++ + V I A G +G
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGG--------VVWRIRASNTKLVCAVGSRNGT 328
Query: 258 ---YVNIWD 263
+ + D
Sbjct: 329 EETKLLVLD 337
Score = 58.3 bits (139), Expect = 3e-10
Identities = 43/325 (13%), Positives = 90/325 (27%), Gaps = 64/325 (19%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDPVLDCCFQDAVHSFSGGL 76
IT ++F +++ S D + ++ T LR H+ V +D +
Sbjct: 20 ITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTD 76
Query: 77 DCTLKMFDFNTQTETVIGTHDQPIR----------------------------------- 101
+ + H +R
Sbjct: 77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH 136
Query: 102 ---AVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTMSLCGEKFVVGTAG 157
+ +++G++D VK+WDP + C+ ++V+++ G V G+
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLD 196
Query: 158 RKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQK 217
+ +WD+ I +L K ++S + + +
Sbjct: 197 TSIRVWDVETGNCIH-----TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251
Query: 218 MKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYD 277
H+ N T DG V +WD + + +
Sbjct: 252 TLQGPNKHQS-----------AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300
Query: 278 TG-----ITSLCFSYDGNVLAIACS 297
+G + + S V A+
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSR 325
Score = 53.7 bits (127), Expect = 8e-09
Identities = 34/246 (13%), Positives = 71/246 (28%), Gaps = 23/246 (9%)
Query: 55 AHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT-QTETVIGTHDQPIRAVEYSDEVNCIL 113
H D V+ C SG D TLK++ T + + H + + + D +
Sbjct: 14 GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISG 73
Query: 114 TGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQ 173
+ V + Y V M L ++ V G+ + +WD+ +
Sbjct: 74 STDRTLKVWNAETGECIHT-LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132
Query: 174 RRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIE 233
+ + V + + V PE + + + H
Sbjct: 133 LM----GHVAAVRCVQYDGRRVVSGAYDFMVKV----WDPETETCLHTLQGH-------- 176
Query: 234 KIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
S + +G D + +WD + + + + + N+L
Sbjct: 177 ---TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILV 231
Query: 294 IACSYN 299
+ +
Sbjct: 232 SGNADS 237
Score = 48.3 bits (113), Expect = 5e-07
Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 14/153 (9%)
Query: 27 SNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFN 86
+++ S D ++ ++D+ N + SG D T+K++D
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 245
Query: 87 TQTETVIGTHDQP--IRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDK---- 140
T N ++T S D +VK+WD ++ + N +
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 305
Query: 141 --VFTMSLCGEKFVV------GTAGRKVCIWDL 165
V+ + K V GT K+ + D
Sbjct: 306 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 62.1 bits (149), Expect = 2e-11
Identities = 24/289 (8%), Positives = 66/289 (22%), Gaps = 19/289 (6%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNN------LRLKYAHSDPVLDCCFQDA 68
+ + AV + + + + V ++DI++ + + C
Sbjct: 51 GEVVCAVTISNPTR--HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 69 VHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS 128
+ G + + I Y+ ++ +
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
Query: 129 SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188
+ + T D + ++ +
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE------GRQLQQHD 222
Query: 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYN 248
F ++ + G +++ +++ V ++ F
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE----SCVLSLKFAYCGK 278
Query: 249 TFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
F + G D +N W + Q + + S S D +
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSG 326
Score = 49.0 bits (115), Expect = 3e-07
Identities = 13/134 (9%), Positives = 46/134 (34%), Gaps = 3/134 (2%)
Query: 35 SWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSGGLDCTLKMFDFNTQTETVI 93
D V +D+ ++ + + + G +++ N + +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261
Query: 94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTM--SLCGEKF 151
H+ + +++++ ++ D + W + + V + S+ +
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321
Query: 152 VVGTAGRKVCIWDL 165
V G+ +K ++++
Sbjct: 322 VTGSGDKKATVYEV 335
Score = 46.3 bits (108), Expect = 2e-06
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 2/111 (1%)
Query: 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSFSG 74
I ++ + P + + + + H VL F S
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEV-LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVST 283
Query: 75 GLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
G D L + + + + S + I+TGS D +++
Sbjct: 284 GKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 40.9 bits (94), Expect = 1e-04
Identities = 18/87 (20%), Positives = 24/87 (27%), Gaps = 6/87 (6%)
Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWD---GFNKKRLCQ--FHRYDTGITSLCFSYDGNV 291
V A++ TG G V +WD NK + Q D I S DG
Sbjct: 53 VVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Query: 292 LAIACSYNYELETPPDPIPPNNIFIRH 318
L + + P
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELT 138
Score = 27.9 bits (60), Expect = 1.7
Identities = 3/31 (9%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDI 45
+ + + + ++++ S D ++Y++
Sbjct: 306 SSSVLSCDISVDD-KYIVTGSGDKKATVYEV 335
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 60.6 bits (145), Expect = 5e-11
Identities = 28/313 (8%), Positives = 68/313 (21%), Gaps = 28/313 (8%)
Query: 2 VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWD-CNVSLYDITNNNLRLKYAHSDPV 60
D Y L P I V+ ++ + + + + +YD + V
Sbjct: 29 QDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNV 88
Query: 61 LDC------------CFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDE 108
+ + + + T D
Sbjct: 89 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL 148
Query: 109 VNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLC--GEKFVVGTAGRKVCIWDLR 166
+ G ++ ++D + T+ + + + + D
Sbjct: 149 KHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 208
Query: 167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGR--AAVEYLDTGPEMQKMKYAFKC 224
+ + + + I P A EY +
Sbjct: 209 VLNFSFEVVS-----KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP 263
Query: 225 HRIKEDGIEK--IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITS 282
+ + I + + + G + +D +K +T
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTD 319
Query: 283 LCFSYDGNVLAIA 295
L S D + +
Sbjct: 320 LRLSADRKTVMVR 332
Score = 26.7 bits (57), Expect = 4.5
Identities = 9/46 (19%), Positives = 11/46 (23%), Gaps = 2/46 (4%)
Query: 254 GSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN 299
S G I D L I + D V I +
Sbjct: 21 VSRGQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTRE 64
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 58.5 bits (139), Expect = 2e-10
Identities = 31/287 (10%), Positives = 72/287 (25%), Gaps = 14/287 (4%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLR--LKYAHSDPVLDCCFQDAVHSF 72
ITA+ + + + L ++ + +++ +DI+ H+ + F
Sbjct: 12 NKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 73 SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
+ D LK+ + + V+ + K S +
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 133 GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK 192
++L +K + + + S P +
Sbjct: 131 TEVPISYNSSCVALSNDKQ---------FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181
Query: 193 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT 252
V S G V + + V +S+ + AT
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 253 GGSDGYVNIWD--GFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
G D V +W+ + + + + + + A
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288
Score = 38.8 bits (88), Expect = 6e-04
Identities = 7/106 (6%), Positives = 26/106 (24%), Gaps = 3/106 (2%)
Query: 96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLC---GEKFV 152
H++ I A+ S + + + + + WD + + +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 153 VGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLS 198
+ + + G + ++ ++
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116
Score = 38.8 bits (88), Expect = 6e-04
Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 63 CCFQDAVHSFSGGLDCTLKMFDFNTQTETVI----GTHDQPIRAVEYSDEVNCILTGSWD 118
D V +G LD ++ +++ N ++ I + +V + +E I++ D
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TTIVSAGQD 289
Query: 119 TSVKMWD 125
+++K W+
Sbjct: 290 SNIKFWN 296
Score = 36.5 bits (82), Expect = 0.003
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 237 PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG-ITSLCFSYDGNVLAIA 295
+ A+S + T + ++G++N WD F IT + + G++ ++
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73
Query: 296 CSYN 299
+
Sbjct: 74 WDDH 77
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 57.9 bits (138), Expect = 3e-10
Identities = 34/295 (11%), Positives = 87/295 (29%), Gaps = 56/295 (18%)
Query: 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF----- 65
S G+ +++ +Q +++ D + ++D + H+ VL +
Sbjct: 12 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68
Query: 66 ----------------------------------QDAVHSFSGGLDCTLKMFDFNTQTET 91
+ + D ++ ++D + T+
Sbjct: 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128
Query: 92 VIGTHDQPIRAVEYSDEVNC--ILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCG 148
+ RA + + I++ S D ++K+W+ + V + +
Sbjct: 129 TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 188
Query: 149 EKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEY 208
V G++ + +WD+ + + + + V + +G+ V
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLE----GHEELVRCIRFDNKRIVSGAYDGKIKVWD 244
Query: 209 LDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD 263
L + + + E V + F + + D + IWD
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHS----GRVFRLQFDE--FQIVSSSHDDTILIWD 293
Score = 37.5 bits (85), Expect = 0.002
Identities = 26/202 (12%), Positives = 57/202 (28%), Gaps = 21/202 (10%)
Query: 96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLCGEKFVVG 154
+ + ++Y D I++G D ++K+WD + C T V + + G
Sbjct: 14 TSKGVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 71
Query: 155 TAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPE 214
++ V +WD+ + SI + P
Sbjct: 72 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSI-----AVWDMASPT 126
Query: 215 MQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFH 274
++ HR + + D + +W+ + + +
Sbjct: 127 DITLRRVLVGHRA-----------AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 175
Query: 275 RYDTGITSLCFSYDGNVLAIAC 296
+ GI C Y ++
Sbjct: 176 GHKRGIA--CLQYRDRLVVSGS 195
Score = 36.7 bits (83), Expect = 0.003
Identities = 37/222 (16%), Positives = 68/222 (30%), Gaps = 19/222 (8%)
Query: 56 HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILT 114
S V + D SG D T+K++D NT ++ H + ++Y DE I
Sbjct: 14 TSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITG 71
Query: 115 GSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQR 174
S T + V + V + R + +WD+ + I R
Sbjct: 72 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131
Query: 175 RESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEK 234
R + F + + V +S + V T ++ +
Sbjct: 132 RVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLN-------------GH 177
Query: 235 IYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRY 276
+ + + +G SD + +WD L +
Sbjct: 178 KRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGH 217
Score = 32.9 bits (73), Expect = 0.037
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
V + + + +G D + IWD + + + L + + + S
Sbjct: 18 VYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDS 75
Query: 298 YNY 300
Sbjct: 76 TVR 78
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 58.3 bits (139), Expect = 3e-10
Identities = 43/347 (12%), Positives = 87/347 (25%), Gaps = 65/347 (18%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRL-------KYAHSDPVLDCCFQD 67
+ I +V N F ++ S D + ++D + + H +
Sbjct: 14 DADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 68 AVHSF--------SGGLDCTLKMFDFNTQTETVIGT-----------HDQPIRAV----- 103
A+ + L + + ET A+
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 104 EYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGE-------------- 149
+ ++ + +W N + T+ L G
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190
Query: 150 ------KFVVGTAGRKVCIWD-LRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG 202
G V I + + S+ + I+ L +I
Sbjct: 191 DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250
Query: 203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKI------YPVNAISFHQEYNTFATGGSD 256
+ T E + + + V ++SF+ T + G D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310
Query: 257 GYVNIWDGFNKKRLCQFHRYDTGI----TSLCFSYDGNVLAIACSYN 299
G + WD K+R+ + + I L G+ LA ++
Sbjct: 311 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
Score = 34.4 bits (77), Expect = 0.016
Identities = 17/204 (8%), Positives = 57/204 (27%), Gaps = 28/204 (13%)
Query: 12 SPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQ----- 66
P T+V + + + V + +++ + +++
Sbjct: 181 MTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 67 ---DAVHSFSGGLD-----------------CTLKMFDFNTQTETVIGTHDQPIRAVEYS 106
+L + ++Q H + ++ ++
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 107 DEVNCILTGSWDTSVKMWDPRSSRCVGNYTQ-PDKVFTMSLCGEKFVVGTAGRKVCIWDL 165
D + + WD ++ WD ++ + D + G + + ++D+
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 358
Query: 166 RNMGYIMQRRESSLKFQTRCIKCF 189
+ + + + ++ C C
Sbjct: 359 KFLKKGWRSGMGADLNESLCCVCL 382
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 56.1 bits (133), Expect = 2e-09
Identities = 46/328 (14%), Positives = 94/328 (28%), Gaps = 55/328 (16%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCFQDAVHSFSGGL 76
IT ++F + +++ + D + +YD N L+ H V + SG
Sbjct: 16 ITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGST 72
Query: 77 DCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCI---LTGSWDTSVKMWDPRSSRCVG 133
D T++++D T + E I +TGS D ++ +W V
Sbjct: 73 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 132
Query: 134 NYTQPDK------------------------VFTMSLCGEKFVVGTAGRKVCIWDLR--- 166
++ + V T+S G V G+ + +WD+
Sbjct: 133 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK 192
Query: 167 --------------------NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAV 206
I +++++ + +
Sbjct: 193 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 252
Query: 207 EYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFN 266
+ + + ++AI+ + GS+ NI++ +
Sbjct: 253 DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS 312
Query: 267 KKRLCQFHRYDTG-ITSLCFSYDGNVLA 293
K + D I S+ F V A
Sbjct: 313 GKLVHANILKDADQIWSVNFKGKTLVAA 340
Score = 44.9 bits (104), Expect = 8e-06
Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 7/128 (5%)
Query: 56 HSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTE-TVIGTHDQPIRAVEYSDEVNCILT 114
H V+ C + + +G D ++++D + + HD + A++Y+ +++
Sbjct: 11 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69
Query: 115 GSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKF-----VVGTAGRKVCIWDLRNMG 169
GS D +V++WD + C + + E V G+ + +W L
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 170 YIMQRRES 177
+ E
Sbjct: 130 SVPDHGEE 137
Score = 42.2 bits (97), Expect = 5e-05
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
+ + F Y TG D + ++D NKK L Q +D G+ +L +++ G +++ +
Sbjct: 16 ITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73
Query: 298 YNYELETPPDPIPPNNIFIRHVTDQ 322
+ + + T +
Sbjct: 74 RTVRVWDIKKGCCTHVFEGHNSTVR 98
Score = 39.5 bits (90), Expect = 4e-04
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 4/163 (2%)
Query: 85 FNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFT 143
F Q T+ G I +++ D N ++TG+ D ++++D + + + + V+
Sbjct: 1 FVPQRTTLRGHMTSVITCLQFED--NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58
Query: 144 MSLC-GEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEG 202
+ G V G+ R V +WD++ + + I + N + V S +
Sbjct: 59 LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 203 RAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQ 245
V L + + E Y V + H
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161
Score = 38.3 bits (87), Expect = 9e-04
Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 36 WDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT--QTETVI 93
D ++ +D + + + Y H++ F + + G + +++ + I
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI 320
Query: 94 GTHDQPIRAVEYSDEVNCILTGSWDTSVKMWD 125
I +V + + + D +
Sbjct: 321 LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI 351
Score = 32.6 bits (72), Expect = 0.056
Identities = 27/228 (11%), Positives = 64/228 (28%), Gaps = 16/228 (7%)
Query: 36 WDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGT 95
+ + + + H V + + + + ++
Sbjct: 140 YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 199
Query: 96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGT 155
H I + Y E ++ S DT++++WD + + + + +KF+V
Sbjct: 200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSA 259
Query: 156 AGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEM 215
A R+ S I F ++S E + + L +G
Sbjct: 260 AADGSIRG---WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSG--- 313
Query: 216 QKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWD 263
+ + + +++F + A DG +
Sbjct: 314 KLVHANILKDAD---------QIWSVNFKGK-TLVAAVEKDGQSFLEI 351
Score = 31.4 bits (69), Expect = 0.13
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL--RLKYAHSDPVLDCCFQDAVHSFS 73
++A+ S+ +L S + ++Y++ + L +D + F+ +
Sbjct: 282 TNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAA 340
Query: 74 GGLDCTLKM--FDFN 86
D + DF+
Sbjct: 341 VEKDGQSFLEILDFS 355
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 55.3 bits (131), Expect = 3e-09
Identities = 36/302 (11%), Positives = 81/302 (26%), Gaps = 24/302 (7%)
Query: 18 ITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL----RLKYAHSDPVLDCCF---QDAVH 70
T + + P +N V D ++ + + S V F + + +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 71 SFSGGLDCTLKMFDFNT---------QTETVIGTHDQPIRAVEYS--DEVNCILTGSWDT 119
SG + ++ + ++ PI + + C++ D
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 120 SVKMWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSL 179
S +G + + + + + + G +
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS---- 195
Query: 180 KFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVN 239
K + S G + + + + ED E +
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255
Query: 240 AISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF--HRYDTGITSLCFSYDGNVLAIACS 297
+ FAT G+D + +WD K + ++ + G + GN I+ S
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315
Query: 298 YN 299
+
Sbjct: 316 LD 317
Score = 39.9 bits (91), Expect = 2e-04
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 110 NCILTGSWDTSVKMWDPRSSRCVGNYT-QPDKVFTMSLC-----GEKFVVGTAGRKVCIW 163
T D ++++WD +S+CV +T ++ + + + + + +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Query: 164 DL 165
+L
Sbjct: 324 EL 325
Score = 37.6 bits (85), Expect = 0.002
Identities = 21/261 (8%), Positives = 57/261 (21%), Gaps = 13/261 (4%)
Query: 16 DGITAVKFAPNSNQFLLAS-SWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSG 74
+T VKF+P L S V ++ T + + + S
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123
Query: 75 GLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN 134
+ + + ++ + + + + G+
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS 183
Query: 135 YTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQG 194
++ + + G + S K K +
Sbjct: 184 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243
Query: 195 YVLSSIEGRAAV--------EYLDTGPEMQKMK----YAFKCHRIKEDGIEKIYPVNAIS 242
+ + + T ++ KC + +++
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303
Query: 243 FHQEYNTFATGGSDGYVNIWD 263
+ DG +N ++
Sbjct: 304 VATGNGRIISLSLDGTLNFYE 324
Score = 31.8 bits (70), Expect = 0.091
Identities = 16/203 (7%), Positives = 45/203 (22%), Gaps = 15/203 (7%)
Query: 11 NSPPEDGITAVKFAPNSNQFL--------LASSWDCNVSLYDITNNNLRLKYAHSDPVLD 62
I+ + + + + + +
Sbjct: 111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS 170
Query: 63 CCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVK 122
+ G + + ++ +R VE+S + +
Sbjct: 171 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 230
Query: 123 MWDPRSSRCVGNYTQPDKVFTMSLC-------GEKFVVGTAGRKVCIWDLRNMGYIMQRR 175
S Y + D+ +KF A + +WD+ + +
Sbjct: 231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290
Query: 176 ESSLKFQTRCIKCFPNKQGYVLS 198
+ + + G ++S
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIIS 313
Score = 27.2 bits (58), Expect = 3.2
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDI 45
+ G V N +++ S D ++ Y++
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 54.9 bits (130), Expect = 3e-09
Identities = 26/289 (8%), Positives = 67/289 (23%), Gaps = 18/289 (6%)
Query: 19 TAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY-AHSDPVLDCCF-QDAVHSFSGGL 76
+ P ++ + +V + + Y HS + SG +
Sbjct: 21 VVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 77 DCTLKMFDFN-------TQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSS 129
++++D T G E V ++D +S
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 130 RCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCF 189
F + + + + + ++
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 190 PNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT 249
P+ + + +G + G + + + V +++ +
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG------SVFGLTWSPDGTK 252
Query: 250 FATGGSDGYVNIWDGFNKKRLCQFHRY-DTGITSLCFSYDGNVLAIACS 297
A+ +D + IW+ K L + L +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301
Score = 39.1 bits (89), Expect = 4e-04
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 110 NCILTGSWDTSVKMWDPRSSRCV----GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDL 165
I + S D ++K+W+ + + D+ + + V +A + +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 35.6 bits (80), Expect = 0.006
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 52 LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNT--QTETVIGTHDQPIRAVEYSDEV 109
D S D T+K+++ T +T+ + +
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 293
Query: 110 NCILTGSWDTSVKMWDP 126
+++ S + + +P
Sbjct: 294 QALVSISANGFINFVNP 310
Score = 30.3 bits (66), Expect = 0.33
Identities = 5/59 (8%), Positives = 11/59 (18%), Gaps = 1/59 (1%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIAC 296
+ + + V + + + T S G A
Sbjct: 20 AVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 51.9 bits (122), Expect = 3e-08
Identities = 34/280 (12%), Positives = 84/280 (30%), Gaps = 19/280 (6%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSG 74
GITA+ P L++ S+D + + ++ + HS+ ++ S
Sbjct: 13 NKGITALTVNP-----LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDN-------SK 56
Query: 75 GLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN 134
+ + +D + + V ++ + D + + + + +
Sbjct: 57 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116
Query: 135 YTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQG 194
+SL VG + + ++ L+ + I P++
Sbjct: 117 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176
Query: 195 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG 254
+ G+ + L + K A E + ATG
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS--WKPAEKGANEEEIEEDLVATGS 234
Query: 255 SDGYVNIWD-GFNKKRLCQFHRYDTGITSLCFSYDGNVLA 293
D + I+ K + + + G+ +L + +++
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVS 274
Score = 36.5 bits (82), Expect = 0.003
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 23 FAPNSNQFLLASSWDCNVSLYDITNNN--LRLKYAHSDPVLDCCFQDAVHSFSGGLDCTL 80
+ S D N+ +Y + ++ AH D V + ++ S G D +
Sbjct: 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACI 281
Query: 81 KMFD 84
K ++
Sbjct: 282 KRWN 285
Score = 31.5 bits (69), Expect = 0.11
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 96 HDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRC 131
H++ I A+ + +++GS+D + W S
Sbjct: 12 HNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43
Score = 26.5 bits (56), Expect = 4.6
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 15 EDGITAVKFAPNSNQFLLASSWDCNVSLYDI 45
+DG+ + + S L++S D + +++
Sbjct: 258 KDGVNNLLWETPST--LVSSGADACIKRWNV 286
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 47.1 bits (110), Expect = 1e-06
Identities = 16/139 (11%), Positives = 36/139 (25%), Gaps = 1/139 (0%)
Query: 1 MVDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDI-TNNNLRLKYAHSDP 59
D ++ + T A +++ + D+ T + D
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 60 VLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDT 119
+ + + G L+ FD +V S + + + G
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 120 SVKMWDPRSSRCVGNYTQP 138
+ +D + G P
Sbjct: 302 DLAAYDAETLEKKGQVDLP 320
Score = 41.3 bits (95), Expect = 8e-05
Identities = 22/302 (7%), Positives = 67/302 (22%), Gaps = 30/302 (9%)
Query: 17 GITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDP----------------- 59
AP + ++ D+ + S P
Sbjct: 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK 94
Query: 60 --VLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSW 117
+ + + ++D T + + I + ++ + + +
Sbjct: 95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR 154
Query: 118 DTSVKMW-DPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRE 176
D V + + + + + + I
Sbjct: 155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214
Query: 177 SSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIY 236
++ + + + I + + + I
Sbjct: 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIK 274
Query: 237 ------PVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQF---HRYDTGITSL-CFS 286
+++ + +T GG+ G + +D ++ Q + S+ F+
Sbjct: 275 RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFT 334
Query: 287 YD 288
D
Sbjct: 335 RD 336
Score = 37.5 bits (85), Expect = 0.002
Identities = 20/220 (9%), Positives = 57/220 (25%), Gaps = 10/220 (4%)
Query: 112 ILTGSWDTSVKMWDPRSSRCVGNYTQPDKV-----FTMSLCGEK-FVVGTAGRKVCIWDL 165
IL + + + D T D ++ G + + DL
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 166 RNMGYIMQRRESSLKFQTRCIKCFP-NKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKC 224
+ + S+ + + + + + G L+ E +E + ++
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 225 HRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLC 284
+ E + +++ ++ + G D +V + ++
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET---Y 180
Query: 285 FSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVTDQET 324
D + + + TP + +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 46.3 bits (108), Expect = 2e-06
Identities = 12/114 (10%), Positives = 30/114 (26%), Gaps = 2/114 (1%)
Query: 28 NQFLLASSWDCNVSLYDITNNNLRLK--YAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDF 85
Q + D+ + ++ + G+ L +D
Sbjct: 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279
Query: 86 NTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD 139
+ D V + + + + G + +++P + V N P
Sbjct: 280 KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333
Score = 42.0 bits (97), Expect = 5e-05
Identities = 17/220 (7%), Positives = 42/220 (19%), Gaps = 16/220 (7%)
Query: 112 ILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLC----GEK-FVVGTAGRKVCIWDLR 166
++ ++ ++ + D S + PDK + +V+ + DL
Sbjct: 11 MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70
Query: 167 NMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHR 226
+ + + + + +S T
Sbjct: 71 -----TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE 125
Query: 227 IKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKK------RLCQFHRYDTGI 280
+ DG + + K +
Sbjct: 126 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185
Query: 281 TSLCFSYDGNVLAIACSYNYELETPPDPIPPNNIFIRHVT 320
+ D S +E + T
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225
Score = 40.9 bits (94), Expect = 1e-04
Identities = 25/292 (8%), Positives = 75/292 (25%), Gaps = 12/292 (4%)
Query: 9 SLNSPPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDA 68
S P + G AP++ + ++ ++ D+ S +
Sbjct: 33 SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92
Query: 69 VHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRS 128
+ S +++ T+ + + +E + + V+ +
Sbjct: 93 SFAIS---PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP----VRTFPMPR 145
Query: 129 SRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKC 188
+ ++ K V T L + + + +
Sbjct: 146 QVYLMRAADDGSLYVAGPDIYKMDVKTG---KYTVALPLRNWNRKGYSAPDVLYFWPHQS 202
Query: 189 FPNKQGYVLSSIEGRAAVEYLDTGPEMQKMK-YAFKCHRIKEDGIEKIYPVNAISFHQEY 247
++ + + + + T + K + + +
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262
Query: 248 NTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACSYN 299
+ G + +D +K + + D + F G+ L + ++N
Sbjct: 263 DPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFN 313
Score = 39.7 bits (91), Expect = 3e-04
Identities = 13/258 (5%), Positives = 62/258 (24%), Gaps = 23/258 (8%)
Query: 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLD---CCFQDAVHSF 72
+ + +P+ + + ++ + + ++ +D + F +
Sbjct: 89 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVY 148
Query: 73 SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
++ + + A+ + +
Sbjct: 149 LMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR---- 204
Query: 133 GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK 192
++ + + DL+ Q + ++ +
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD- 263
Query: 193 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFAT 252
+ + R A L ++ + ++F ++ +
Sbjct: 264 -PNQIYGVLNRLAKYDLKQRKLIKA--------------ANLDHTYYCVAFDKKGDKLYL 308
Query: 253 GGSDGYVNIWDGFNKKRL 270
GG+ + +++ +++
Sbjct: 309 GGTFNDLAVFNPDTLEKV 326
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 46.1 bits (108), Expect = 3e-06
Identities = 23/249 (9%), Positives = 51/249 (20%), Gaps = 24/249 (9%)
Query: 72 FSGGLDCTLKMFDFNT-QTETVIGTHDQPI-------RAVEYSDEVNCILTGSW-DTSVK 122
G +++FD T I D P + C+L + ++
Sbjct: 90 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149
Query: 123 MWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKF- 181
+ +G+ + DL +
Sbjct: 150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209
Query: 182 -QTRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPV-- 238
N G ++ ++ + K K D
Sbjct: 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269
Query: 239 ------NAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTG--ITSLCFSYDGN 290
+ I ++ + + + + G ++ + DG
Sbjct: 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS---GPISNGHDSDAIIAAQDGA 326
Query: 291 VLAIACSYN 299
A S
Sbjct: 327 SDNYANSAG 335
Score = 29.2 bits (64), Expect = 0.76
Identities = 17/254 (6%), Positives = 59/254 (23%), Gaps = 34/254 (13%)
Query: 20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCT 79
+ +S L + + C H G
Sbjct: 128 IIGNCASSACLLFFLFGSSAAAGLSVPGA----SDDQLTKSASC-----FHIHPGA---- 174
Query: 80 LKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPD 139
+G+ + A + + + ++
Sbjct: 175 --------AATHYLGSCPASLAASDLAAAPAAA----GIVGAQCTGAQNCSSQAAQANYP 222
Query: 140 KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSS 199
+ ++ + + ++ ++ + + N G ++ +
Sbjct: 223 GMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282
Query: 200 IEGRAAVEYLDTGPEMQKMKYA-FKCHRIKEDGIEKIYPVNAISFHQEYNT--FATGGSD 256
+E + + + + +G + +AI Q+ + +A
Sbjct: 283 VEHSRSCL--AAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGT 336
Query: 257 GYVNIWDGFNKKRL 270
++I+D + +
Sbjct: 337 EVLDIYDAASDQDQ 350
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 44.0 bits (102), Expect = 1e-05
Identities = 33/248 (13%), Positives = 57/248 (22%), Gaps = 24/248 (9%)
Query: 73 SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILT----------GSWDTSVK 122
G +++FD T T R + + LT S +V
Sbjct: 73 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG 132
Query: 123 MWDPRSSRCVGNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQ 182
+ D PD + F + + G +
Sbjct: 133 VVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 192
Query: 183 ----TRCIKCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYP- 237
V + G+ L +G + DG
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 252
Query: 238 --------VNAISFHQEYNTFATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDG 289
+ + + + +V + D +RL +F I S+ S D
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDE 311
Query: 290 NVLAIACS 297
L A S
Sbjct: 312 KPLLYALS 319
Score = 40.5 bits (93), Expect = 2e-04
Identities = 23/327 (7%), Positives = 73/327 (22%), Gaps = 43/327 (13%)
Query: 2 VDSKTEYSLNSPPEDGITAVKFAPNSNQFLLASSW---------DCNVSLYDITNNNLRL 52
+D + + + A + + AS+ V ++D
Sbjct: 33 IDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA 92
Query: 53 KY-----------AHSDPVLDCCFQDAVHSFSGGLDCTLKMFD---------FNTQTETV 92
+ + + + + D +
Sbjct: 93 DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH 152
Query: 93 IGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGN--------YTQPDKVFTM 144
I + D + + + ++ + ++
Sbjct: 153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP 212
Query: 145 SLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRA 204
+ G+ + + +R + + + L +
Sbjct: 213 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 272
Query: 205 AVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT--FATGGSDGYVNIW 262
+ + + E G + +++I+ Q+ +A D + I
Sbjct: 273 WRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIH 328
Query: 263 DGFNKKRLCQFHRYDTGITSLCFSYDG 289
D + + L ++ G + + G
Sbjct: 329 DAESGEELRSVNQLGHGPQVITTADMG 355
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 33.3 bits (76), Expect = 0.037
Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 20/138 (14%)
Query: 20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKY--AHSDPVLDCCFQDAVHSF-SGGL 76
N + S V + D + +Y +P D + +G L
Sbjct: 222 IAAAVKAGNFKTIGDS---KVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKL 278
Query: 77 DCTLKMFDFNTQTETVIGTHDQPIRAV-------------EYSDEVNCILTGSWDTSVKM 123
T+ + + + + + + + N T D+ V
Sbjct: 279 SPTVSVIAI-DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK 337
Query: 124 WDPRSSRCVGNYTQPDKV 141
W+ + N + + +
Sbjct: 338 WNIADAIKHYNGDRVNYI 355
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 32.1 bits (71), Expect = 0.079
Identities = 26/283 (9%), Positives = 62/283 (21%), Gaps = 25/283 (8%)
Query: 16 DGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGG 75
+ + +P+ + + V Y I ++ L +A + +
Sbjct: 37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQF 96
Query: 76 LDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPR-SSRCVGN 134
+ + T G + VE D + + ++ + + C+
Sbjct: 97 VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT 156
Query: 135 YTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQG 194
+ + V G R + Y + SS+
Sbjct: 157 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH------ 210
Query: 195 YVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGG 254
++ ++ D Y T
Sbjct: 211 ------------------GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 252
Query: 255 SDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
++ + + F +T + G L A
Sbjct: 253 LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 295
Score = 25.9 bits (55), Expect = 6.4
Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 250 FATGGSDGYVNIWDGFNKKRLCQFHRYDTG--ITSLCFSYDGNVLAIACS 297
+ +++W+ ++ L D + + S D L +
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR 56
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 31.4 bits (69), Expect = 0.12
Identities = 25/252 (9%), Positives = 52/252 (20%), Gaps = 9/252 (3%)
Query: 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSF 72
P +P+ + +A++ +VS+ D NN+
Sbjct: 29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQV 88
Query: 73 SGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCV 132
+ + +T + TV GT L S D + V
Sbjct: 89 YVTNMASSTLSVIDTTSNTVAGTVKTGKSP--------LGLALSPDGKKLYVTNNGDKTV 140
Query: 133 GNYTQPDKVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNK 192
K ++ + G A M +
Sbjct: 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200
Query: 193 QGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNT-FA 251
++ + + I I+ + +
Sbjct: 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYV 260
Query: 252 TGGSDGYVNIWD 263
V++ D
Sbjct: 261 ALSFCNTVSVID 272
Score = 31.0 bits (68), Expect = 0.16
Identities = 27/269 (10%), Positives = 61/269 (22%), Gaps = 12/269 (4%)
Query: 33 ASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCF-QDAVHSF-SGGLDCTLKMFDFNTQTE 90
A+S N+S+ D+T+N + + D + + + + D T
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--- 63
Query: 91 TVIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNYTQPDKVFTMSLCGEK 150
+ A V G M S
Sbjct: 64 ---NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLG 120
Query: 151 FVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCIKCFPNKQGYVLSSIEGRAAVEYLD 210
+ G+K+ + + + + + T + P + A
Sbjct: 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSM 180
Query: 211 TGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQEYNTFATGGSDGYVNIWDGFNKKRL 270
+ + + + E I + N ++
Sbjct: 181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVD----KYFNTVSMIDTGTNKI 236
Query: 271 CQFHRYDTGITSLCFSYDGNVLAIACSYN 299
+ + DG + +A S+
Sbjct: 237 TARIPVGPDPAGIAVTPDGKKVYVALSFC 265
Score = 28.3 bits (61), Expect = 1.2
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 250 FATGGSDGYVNIWDGFNKKRLCQFHRYDTG--ITSLCFSYDGNVLAIACSYNYEL 302
+ +++ D + K G S DG + +A +++ ++
Sbjct: 5 YIANSESDNISVIDVTSNKVT---ATIPVGSNPMGAVISPDGTKVYVANAHSNDV 56
Score = 27.5 bits (59), Expect = 2.3
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
Query: 63 CCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYS-DEVNCILTGSWDTSV 121
A + T+ M D T T + + D + S+ +V
Sbjct: 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTV 268
Query: 122 KMWDPRSSRCVG 133
+ D ++
Sbjct: 269 SVIDTATNTITA 280
Score = 26.0 bits (55), Expect = 6.6
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 13 PPEDGITAVKFAPNSNQFLLASSWDCNVSLYDITNNNL 50
P + P+ + +A S+ VS+ D N +
Sbjct: 241 PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 31.3 bits (70), Expect = 0.15
Identities = 8/48 (16%), Positives = 11/48 (22%)
Query: 250 FATGGSDGYVNIWDGFNKKRLCQFHRYDTGITSLCFSYDGNVLAIACS 297
A I DG + + + V AI S
Sbjct: 124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 171
Score = 28.2 bits (62), Expect = 1.4
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 5/67 (7%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKK-----RLCQFHRYDTGITSLCFSYDGNVL 292
V+ G DG VN+ D + K+ + + TS ++
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 293 AIACSYN 299
+
Sbjct: 124 IAGAYWP 130
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 29.2 bits (64), Expect = 0.82
Identities = 24/234 (10%), Positives = 49/234 (20%), Gaps = 16/234 (6%)
Query: 77 DCTLKMFDFNTQTET-VIGTHDQPIRAVEYSDEVNCILTGSWDTSVKMWDPRSSRCVGNY 135
+ + D +++ VI T S +L D + M D +
Sbjct: 41 AGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99
Query: 136 TQPD---------KVFTMSLCGEKFVVGTAGRKVCIWDLRNMGYIMQRRESSLKFQTRCI 186
F + I D + + T+
Sbjct: 100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 159
Query: 187 KCFPNKQGYVLSSIEGRAAVEYLDTGPEMQKMKYAFKCHRIKEDGIEKIYPVNAISFHQE 246
P + S V +TG + + I + +
Sbjct: 160 HPEPRVAAIIASHEHPEFIVNVKETG--KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSS 217
Query: 247 YNTFATGGSDGYVNIWDGFNKK---RLCQFHRYDTGITSLCFSYDGNVLAIACS 297
+ F T ++ + L + F + + S
Sbjct: 218 HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271
Score = 26.5 bits (57), Expect = 6.0
Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 6/94 (6%)
Query: 238 VNAISFHQEYNTFATGGSDGYVNIWDGFNKK-----RLCQFHRYDTGITSLCFSYDGNVL 292
V+ G D +++ D + K+ + + +S Y+
Sbjct: 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123
Query: 293 AIACSYNYELETP-PDPIPPNNIFIRHVTDQETK 325
+ + + + P I +T+
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ 157
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 25.9 bits (57), Expect = 3.1
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 280 ITSLCFSYDGNVLAIACSY------NYELETPPDPIPPNNIFIRHVTDQE 323
+T+ C Y V+A C + N+E+ D VT +
Sbjct: 34 LTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLEL 83
>d1j3la_ c.8.7.1 (A:) Demethylmenaquinone methyltransferase {Thermus
thermophilus [TaxId: 274]}
Length = 164
Score = 25.7 bits (56), Expect = 5.9
Identities = 6/82 (7%), Positives = 18/82 (21%)
Query: 20 AVKFAPNSNQFLLASSWDCNVSLYDITNNNLRLKYAHSDPVLDCCFQDAVHSFSGGLDCT 79
++ + +L + + V+ +D +
Sbjct: 50 VLEEEGAGQVLFVDGGGSLRTALLGGNLARRAWEKGWAGVVVHGAVRDTEELREVPIGLL 109
Query: 80 LKMFDFNTQTETVIGTHDQPIR 101
+ G D P++
Sbjct: 110 ALAATPKKSAKEGKGEVDVPLK 131
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 26.2 bits (57), Expect = 6.2
Identities = 10/73 (13%), Positives = 23/73 (31%)
Query: 52 LKYAHSDPVLDCCFQDAVHSFSGGLDCTLKMFDFNTQTETVIGTHDQPIRAVEYSDEVNC 111
L++ HS + + + T+K+ +F + G + + +
Sbjct: 115 LQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEV 174
Query: 112 ILTGSWDTSVKMW 124
T+ MW
Sbjct: 175 HQHDVVSTATDMW 187
>d1kjsa_ a.50.1.1 (A:) C5a anaphylotoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 74
Score = 24.0 bits (52), Expect = 8.0
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 158 RKVCIWDLR-NMGYIMQRRESSLKFQTRCIKCF 189
+K C N ++R + + RCIK F
Sbjct: 19 KKCCYDGACVNNDETCEQRAARISLGPRCIKAF 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.432
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,273,032
Number of extensions: 59840
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 114
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)