BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11889
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 100 bits (248), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 6 ENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFS 65
++ F SIP WWA+V+MTTVGYGDMVP T G VG+LCA+AGVLTIALPVPVIVSNF+
Sbjct: 355 DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 414
Query: 66 RFY 68
FY
Sbjct: 415 YFY 417
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 100 bits (248), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 6 ENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFS 65
++ F SIP WWA+V+MTTVGYGDMVP T G VG+LCA+AGVLTIALPVPVIVSNF+
Sbjct: 355 DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 414
Query: 66 RFY 68
FY
Sbjct: 415 YFY 417
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 99.4 bits (246), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 6 ENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFS 65
++ F SIP WWA+V+MTTVGYGDMVP T G VG+LCA+AGVLTIALPVPVIVSNF+
Sbjct: 370 DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 429
Query: 66 RFY 68
FY
Sbjct: 430 YFY 432
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 99.0 bits (245), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/63 (71%), Positives = 52/63 (82%)
Query: 6 ENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFS 65
++ F SIP WWA+V+MTTVGYGDMVP T G VG+LCA+AGVLTIALPVPVIVSNF+
Sbjct: 370 DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 429
Query: 66 RFY 68
FY
Sbjct: 430 YFY 432
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 6 ENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFS 65
E + N+ P LWWA+VT TTVGYGD+VP T +G + ++ L G+ I + + ++NF
Sbjct: 38 EPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGM-ITSTITNFF 96
Query: 66 RFYSHAQARSKLPKKRRRVLPVEQPRPKRGESVNVINRRMT 106
R + ++ K +++ E P + E + V+ + +T
Sbjct: 97 RCKKPTNSSTQRANKITQLIS-ETPDLTK-EEIAVVEQFLT 135
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 2 HANPENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIV 61
+ +P + S+ LWWA+VT TTVGYGD+VP T +G +G L G+ + L + +
Sbjct: 168 YPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVS 227
Query: 62 SNFSRF 67
+ F +
Sbjct: 228 NMFQKI 233
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 4 NPENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSN 63
+P + S+ LWWA+VT TTVGYGD+VP T +G +G L G+ + L + + +
Sbjct: 158 DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217
Query: 64 FSR 66
F +
Sbjct: 218 FQK 220
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4 NPENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSN 63
PE F SIP +WWA+VT++T GYGD +P+++ G + ++G+ L ++ +
Sbjct: 155 QPEK-FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATG 213
Query: 64 F 64
F
Sbjct: 214 F 214
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 11 SIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66
S P +WW++ T TTVGYGD P T G V AG+ AL + ++F R
Sbjct: 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 34 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 93
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 61 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 120
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 114
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 62 PGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 121
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW+++T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 34 PGAQLITYPRALWWSVITATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 34 PGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 93
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 33 PGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 92
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 114
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 114
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P S P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 78 PGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWF 137
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 34 PGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 114
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 114
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 34 PGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 114
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 114
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 34 PGAQLITYPRALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With
Tetrabutylammonium (Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 34 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGITSAGLVTAALATWF 114
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T T VGYGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPRALWWSVETATCVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 114
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 33 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 92
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWWA T TTV YGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWF 114
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State
With 32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State
With 23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With
17 A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With
16 A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 35 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 94
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPV 57
S + L+W VT+ TVGYGD P T +GM+ + G+ T A+ V
Sbjct: 44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAV 91
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVP 58
S + L+W VT+ TVGYGD P T +GM+ + G+ T A+ V
Sbjct: 44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVE 92
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64
P + P LWW++ T TTVGYGD+ P T G V + +AG+ + L + + F
Sbjct: 55 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVVVAGITSFGLVTAALATWF 114
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 16 LWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
LW+++VT+TTVGYGD P+T G L G+ L + + +P I+SN
Sbjct: 37 LWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 93
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66
++++ T+ TVGYGDM P+T + L G+ IAL ++ + F+R
Sbjct: 100 AFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 151
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66
++++ T+ TVGYGDM P+T + L G+ IAL ++ + F+R
Sbjct: 100 AFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 151
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPV 57
S + L+W VT+ TVGYGD P T +GM+ + G+ T A+ V
Sbjct: 34 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 81
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPV 57
S + L+W VT+ TVGYGD P+T +GM+ + G+ T A+ V
Sbjct: 27 ESWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFAVAV 74
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPV 57
S + L+W VT+ TVGYGD P T +GM+ + G+ T A+ V
Sbjct: 27 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 74
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPV 57
S + L+W VT+ TVGYGD P T +GM+ + G+ T A+ V
Sbjct: 27 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 74
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVP 58
G++W + MTT+G+GD+ ++ G ++ ++GV+ + + +P
Sbjct: 55 GIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLLIILP 98
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 35.8 bits (81), Expect = 0.005, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVP 58
G++W + MTT+G+GD+ ++ G ++ ++GV+ + + +P
Sbjct: 55 GIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILP 98
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 10 NSIPLGL----WWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFS 65
N P G ++++ T+ TVGYGDM P+T ++ L G+ +IAL S
Sbjct: 73 NQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMS 132
Query: 66 RFYSHAQARSKLPKKRRRVL 85
+ PKKR L
Sbjct: 133 Q-----------PKKRAETL 141
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 16 LWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVGYGD P+T G L G+ L + + +P I+SN
Sbjct: 37 LYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 93
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 16 LWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVGYGD P+T G L G+ L + + +P I+SN
Sbjct: 37 LFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 93
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPV 57
S + L+W VT+ VGYGD P T +GM+ + G+ T A+ V
Sbjct: 27 ESWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAV 74
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 16 LWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVG+GD P+T G L G+ L + + +P I+SN
Sbjct: 37 LYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 93
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66
++++ TM T+GYG ++P + + L AL G+L +A+ +I + F+R
Sbjct: 86 AFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66
++++ TM T+GYG ++P + + L AL G+L +A+ +I + F+R
Sbjct: 86 AFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66
++++ TM T+GYG ++P + + L AL G+L +A+ +I + F+R
Sbjct: 86 AFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66
++++ TM T+GYG ++P + + L AL G+L +A+ +I + F+R
Sbjct: 86 AFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66
++++ TM T+GYG ++P + + L AL G+L +A+ +I + F+R
Sbjct: 86 AFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 16 LWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVGYG+ P+T G L G+ L + + +P I+SN
Sbjct: 37 LYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 93
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66
++++ TM T+GYG ++P + + L AL G+L +A+ +I + F+R
Sbjct: 86 AFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAARLIYARFTR 137
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 16 LWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVGYG+ P+T G L G+ L + + +P I+SN
Sbjct: 37 LYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 93
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 16 LWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVG GD P+T G L G+ L + + +P I+SN
Sbjct: 37 LYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 93
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 15 GLWWALVTMTTVGYGDMVPKT---------YVGMFVGALCALAGVLTIALPVPVIVSN 63
L++++VT+TTVG G+ P+T Y+ + +G + L + + +P I+SN
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 113
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVG G+ P+T G L G+ L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVG G+ P+T G L G+ L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVG G+ P+T G L G+ L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVG G+ P+T G L G+ L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak
Channel Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak
Channel Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+
Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+
Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 16 LWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVG G+ P+T G L G+ L + + +P I+SN
Sbjct: 36 LYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 92
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 15 GLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGV---------LTIALPVPVIVSN 63
L++++VT+TTVG G+ P+T G L G+ L + + +P I+SN
Sbjct: 53 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110
>pdb|2H8P|C Chain C, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HFE|C Chain C, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|C Chain C, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 57
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 5 PENDFNSIPLGLWWALVTMTTVGY 28
P + P LWWA T TTVGY
Sbjct: 34 PGAQLITYPRALWWACETATTVGY 57
>pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1IWP|L Chain L, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1MMF|A Chain A, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
pdb|1MMF|L Chain L, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
Length = 555
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 24 TTVGYGDMVPKTYVGMFVGALCALAGVLT 52
TTVG P + + VG+ C GVLT
Sbjct: 172 TTVGIARYAPFNALALLVGSQCGRPGVLT 200
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 8 DFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRF 67
DF S L++A ++T GYG VP + G A C + V+ I + + + R
Sbjct: 93 DFTS---ALFFASTVLSTTGYGHTVPLSDGG---KAFCIIYSVIGIPFTLLFLTAVVQRI 146
Query: 68 YSHAQAR 74
H R
Sbjct: 147 TVHVTRR 153
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 87 VEQPRPKRGESVNVINRRMTAIKNNPSMFTGAKI 120
VE P G+ + ++RR +K S TG KI
Sbjct: 620 VETPEENTGDVIGDLSRRRGMLKGQESEVTGVKI 653
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 87 VEQPRPKRGESVNVINRRMTAIKNNPSMFTGAKI 120
VE P G+ + ++RR +K S TG KI
Sbjct: 621 VETPEENTGDVIGDLSRRRGMLKGQESEVTGVKI 654
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 16 LWWALVTMTTVGYGDMV 32
+++ +VT+TTVG+GD V
Sbjct: 229 IYFVIVTLTTVGFGDYV 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,678,951
Number of Sequences: 62578
Number of extensions: 133370
Number of successful extensions: 291
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 74
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)