Query psy11889
Match_columns 123
No_of_seqs 151 out of 1261
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 21:31:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h33_A LMO2059 protein; bilaye 99.8 4E-22 1.4E-26 135.1 3.8 60 7-66 39-98 (137)
2 2ih3_C Voltage-gated potassium 99.8 6.3E-20 2.1E-24 122.0 8.7 65 5-69 55-119 (122)
3 3eff_K Voltage-gated potassium 99.8 4.9E-20 1.7E-24 124.8 7.7 66 5-70 34-99 (139)
4 2a9h_A Voltage-gated potassium 99.8 2.5E-20 8.5E-25 128.7 5.9 64 5-68 78-141 (155)
5 2k1e_A Water soluble analogue 99.8 1.9E-20 6.4E-25 121.1 2.8 64 5-68 34-97 (103)
6 3ldc_A Calcium-gated potassium 99.7 4.2E-18 1.4E-22 106.0 7.2 55 10-64 27-81 (82)
7 3pjs_K KCSA, voltage-gated pot 99.7 1.3E-19 4.5E-24 126.2 -0.3 65 5-69 61-125 (166)
8 3ouf_A Potassium channel prote 99.7 9.1E-18 3.1E-22 107.5 7.5 56 10-65 31-86 (97)
9 2q67_A Potassium channel prote 99.7 4.2E-18 1.4E-22 112.0 6.0 56 10-65 48-103 (114)
10 3vou_A ION transport 2 domain 99.7 3.7E-18 1.3E-22 116.7 5.4 53 10-62 51-103 (148)
11 1orq_C Potassium channel; volt 99.7 3E-17 1E-21 118.1 8.6 63 4-66 158-220 (223)
12 3um7_A Potassium channel subfa 99.7 8.5E-17 2.9E-21 121.7 9.2 62 9-70 113-174 (309)
13 3ukm_A Potassium channel subfa 99.6 4.5E-16 1.6E-20 116.2 8.3 62 6-67 88-149 (280)
14 2qks_A KIR3.1-prokaryotic KIR 99.6 1.1E-15 3.6E-20 116.3 8.1 62 6-67 71-134 (321)
15 3beh_A MLL3241 protein; transm 99.6 6.3E-16 2.2E-20 117.8 6.9 64 7-70 157-220 (355)
16 1xl4_A Inward rectifier potass 99.6 7.9E-16 2.7E-20 116.1 7.2 61 6-66 77-137 (301)
17 1p7b_A Integral membrane chann 99.6 1.6E-15 5.4E-20 115.8 7.3 62 6-67 91-152 (333)
18 2r9r_B Paddle chimera voltage 99.6 2.5E-15 8.5E-20 120.3 8.3 68 4-71 368-435 (514)
19 3um7_A Potassium channel subfa 99.6 1E-15 3.5E-20 115.7 2.7 59 10-68 223-287 (309)
20 3ukm_A Potassium channel subfa 99.5 5.8E-15 2E-19 110.3 5.6 56 10-65 200-262 (280)
21 4gx0_A TRKA domain protein; me 99.5 2.1E-14 7.2E-19 115.3 7.2 58 10-67 50-108 (565)
22 1lnq_A MTHK channels, potassiu 99.5 1.6E-15 5.4E-20 114.8 -0.8 58 10-67 44-101 (336)
23 3sya_A G protein-activated inw 99.4 2.8E-13 9.5E-18 103.6 6.9 60 8-67 88-149 (340)
24 3spc_A Inward-rectifier K+ cha 99.4 7.3E-13 2.5E-17 101.4 6.9 59 8-66 91-151 (343)
25 3rvy_A ION transport protein; 99.3 1.7E-12 5.7E-17 96.4 3.1 66 7-72 176-247 (285)
26 4dxw_A Navrh, ION transport pr 97.6 9.6E-05 3.3E-09 52.7 5.2 62 4-65 158-224 (229)
27 3kg2_A Glutamate receptor 2; I 96.5 0.0032 1.1E-07 51.8 5.5 55 11-66 563-617 (823)
28 4f4l_A ION transport protein; 73.7 3.6 0.00012 25.8 3.5 61 7-67 34-100 (112)
29 2knc_B Integrin beta-3; transm 63.5 20 0.0007 21.1 5.4 23 45-67 16-38 (79)
30 3pjz_A Potassium uptake protei 55.9 14 0.00049 29.2 4.5 41 11-51 423-469 (494)
31 2nr1_A NR1 M2, M2; receptor, s 46.4 5.4 0.00018 18.8 0.4 19 11-29 8-26 (27)
32 1q90_M Cytochrome B6F complex 39.5 39 0.0013 17.3 4.1 29 37-65 3-31 (39)
33 3sok_A Fimbrial protein; pilus 36.3 61 0.0021 20.9 4.6 26 44-69 4-29 (151)
34 1oqw_A Fimbrial protein; type 35.9 64 0.0022 20.5 4.6 22 46-67 6-27 (144)
35 2hi2_A Fimbrial protein; type 33.5 35 0.0012 22.0 3.0 24 44-67 4-27 (158)
36 2jp3_A FXYD domain-containing 33.4 43 0.0015 19.2 2.9 29 14-53 8-36 (67)
37 2jo1_A Phospholemman; FXYD1, N 31.9 30 0.001 20.1 2.1 16 37-52 19-34 (72)
38 3pjz_A Potassium uptake protei 31.7 13 0.00046 29.4 0.7 40 12-51 307-348 (494)
39 2zxe_G FXYD10, phospholemman-l 30.0 47 0.0016 19.4 2.7 29 14-53 10-38 (74)
40 2k21_A Potassium voltage-gated 26.2 1E+02 0.0035 20.0 4.1 13 10-22 19-31 (138)
41 3rvy_A ION transport protein; 20.7 1.1E+02 0.0036 21.6 3.8 16 58-73 229-244 (285)
No 1
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.85 E-value=4e-22 Score=135.12 Aligned_cols=60 Identities=40% Similarity=0.734 Sum_probs=56.3
Q ss_pred CCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 7 NDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66 (123)
Q Consensus 7 ~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~ 66 (123)
+++++|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+.+.+..
T Consensus 39 ~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 39 PEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp SSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999998877654
No 2
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.81 E-value=6.3e-20 Score=122.03 Aligned_cols=65 Identities=32% Similarity=0.576 Sum_probs=60.1
Q ss_pred CCCCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRFYS 69 (123)
Q Consensus 5 ~~~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~~~ 69 (123)
+++.+++|.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.+.+.+.+..+
T Consensus 55 ~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 55 PGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp TTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999988875543
No 3
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.81 E-value=4.9e-20 Score=124.75 Aligned_cols=66 Identities=32% Similarity=0.611 Sum_probs=60.9
Q ss_pred CCCCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRFYSH 70 (123)
Q Consensus 5 ~~~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~~~~ 70 (123)
+++.+++|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+.+.+....++
T Consensus 34 ~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~ 99 (139)
T 3eff_K 34 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99 (139)
T ss_dssp TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999887766544
No 4
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.81 E-value=2.5e-20 Score=128.72 Aligned_cols=64 Identities=34% Similarity=0.593 Sum_probs=59.8
Q ss_pred CCCCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRFY 68 (123)
Q Consensus 5 ~~~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~~ 68 (123)
+++.|++|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+.+.+.+..
T Consensus 78 ~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~ 141 (155)
T 2a9h_A 78 PGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGRE 141 (155)
T ss_dssp SCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999998887554
No 5
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.79 E-value=1.9e-20 Score=121.13 Aligned_cols=64 Identities=36% Similarity=0.563 Sum_probs=59.0
Q ss_pred CCCCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRFY 68 (123)
Q Consensus 5 ~~~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~~ 68 (123)
+++.+.+|.||+||+++|+|||||||++|.|+.||+++++++++|+.+++++++.+.+.+.+..
T Consensus 34 ~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 34 PGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp TTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred CCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999988776543
No 6
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.74 E-value=4.2e-18 Score=105.95 Aligned_cols=55 Identities=35% Similarity=0.653 Sum_probs=52.2
Q ss_pred CchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNF 64 (123)
Q Consensus 10 ~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~ 64 (123)
++|.||+||+++|+|||||||++|.|+.||+++++++++|+.++++.++.+.+.+
T Consensus 27 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 27 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999888754
No 7
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.74 E-value=1.3e-19 Score=126.16 Aligned_cols=65 Identities=32% Similarity=0.621 Sum_probs=59.3
Q ss_pred CCCCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 5 PENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRFYS 69 (123)
Q Consensus 5 ~~~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~~~ 69 (123)
+++.+++|.||+||+++|+|||||||++|.|..||+++++++++|+++++++++.+++.+.....
T Consensus 61 ~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 125 (166)
T 3pjs_K 61 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQ 125 (166)
T ss_dssp TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHH
T ss_pred CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999877665443
No 8
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.73 E-value=9.1e-18 Score=107.50 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=53.1
Q ss_pred CchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFS 65 (123)
Q Consensus 10 ~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~ 65 (123)
++|.||+||+++|+|||||||++|.|..||+++++++++|++++++.++.+...+.
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999998887664
No 9
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.73 E-value=4.2e-18 Score=112.01 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=53.0
Q ss_pred CchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFS 65 (123)
Q Consensus 10 ~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~ 65 (123)
++|.||+||+++|+|||||||++|.|..||+++++++++|+.++++.++.+.+.+.
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~ 103 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999998887763
No 10
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.72 E-value=3.7e-18 Score=116.71 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=51.1
Q ss_pred CchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVS 62 (123)
Q Consensus 10 ~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~ 62 (123)
++|.||+||+++|+|||||||++|.|..||+++++++++|++++++.++.+..
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999998876
No 11
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.71 E-value=3e-17 Score=118.15 Aligned_cols=63 Identities=38% Similarity=0.767 Sum_probs=59.0
Q ss_pred CCCCCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 4 NPENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66 (123)
Q Consensus 4 ~~~~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~ 66 (123)
.+++.+.+|.+|+||+++|+|||||||++|.|+.||+++++++++|+.+++++++.+.+.+.+
T Consensus 158 ~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 158 DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp STTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999887764
No 12
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=121.65 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=57.8
Q ss_pred CCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 9 FNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRFYSH 70 (123)
Q Consensus 9 f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~~~~ 70 (123)
-++|.||+||+++|+|||||||++|.|..||+++++++++|+++++++++.+++.+....++
T Consensus 113 ~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~ 174 (309)
T 3um7_A 113 AWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRH 174 (309)
T ss_dssp CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 47999999999999999999999999999999999999999999999999999888776543
No 13
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=116.22 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=55.5
Q ss_pred CCCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 6 ENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRF 67 (123)
Q Consensus 6 ~~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~ 67 (123)
++.-++|.||+||+++|+|||||||++|.|..||+++++++++|++++++.++.++..+...
T Consensus 88 ~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 88 GNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp --CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557999999999999999999999999999999999999999999999999888766544
No 14
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.62 E-value=1.1e-15 Score=116.30 Aligned_cols=62 Identities=26% Similarity=0.402 Sum_probs=57.0
Q ss_pred CCCCC--chhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 6 ENDFN--SIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRF 67 (123)
Q Consensus 6 ~~~f~--s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~ 67 (123)
...++ +|.+||||+++|+|||||||++|.|..||+++++++++|+++++++++.+.+.+.+.
T Consensus 71 ~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 71 IANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp BTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccCcCCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567 999999999999999999999999999999999999999999999999999877643
No 15
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.62 E-value=6.3e-16 Score=117.78 Aligned_cols=64 Identities=30% Similarity=0.714 Sum_probs=59.1
Q ss_pred CCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 7 NDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRFYSH 70 (123)
Q Consensus 7 ~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~~~~ 70 (123)
..|.+|.+|+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+.+.+.+..++
T Consensus 157 ~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 220 (355)
T 3beh_A 157 EKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR 220 (355)
T ss_dssp HHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999888765543
No 16
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.61 E-value=7.9e-16 Score=116.09 Aligned_cols=61 Identities=28% Similarity=0.504 Sum_probs=56.9
Q ss_pred CCCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 6 ENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66 (123)
Q Consensus 6 ~~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~ 66 (123)
+..+.+|.+|+||+++|+|||||||++|.++.||+++++++++|+++++++++.+...+.+
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999999999999999988887753
No 17
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.60 E-value=1.6e-15 Score=115.82 Aligned_cols=62 Identities=27% Similarity=0.461 Sum_probs=57.1
Q ss_pred CCCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 6 ENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRF 67 (123)
Q Consensus 6 ~~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~ 67 (123)
+..+.+|.+||||+++|+|||||||++|.|..||+++++++++|+++++++++.+...+.+.
T Consensus 91 ~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 91 NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp CSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999998877643
No 18
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.59 E-value=2.5e-15 Score=120.34 Aligned_cols=68 Identities=66% Similarity=1.159 Sum_probs=63.1
Q ss_pred CCCCCCCchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 4 NPENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRFYSHA 71 (123)
Q Consensus 4 ~~~~~f~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~~~~~ 71 (123)
+++..|.+|.+|+||+++|+|||||||++|.|..||+++++++++|+++++++++++.+.+....+++
T Consensus 368 ~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~ 435 (514)
T 2r9r_B 368 ERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 435 (514)
T ss_dssp CTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999888877643
No 19
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.55 E-value=1e-15 Score=115.74 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=53.2
Q ss_pred CchhhHHHHHhhhhhccccccccccCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGM------FVGALCALAGVLTIALPVPVIVSNFSRFY 68 (123)
Q Consensus 10 ~s~~~aly~~~vt~tTVGyGDi~P~t~~gr------~~~~~~~l~Gi~~~~~~i~~i~~~~~~~~ 68 (123)
++|.||+||+++|+|||||||++|.+..|| +++++++++|+++++++++.+++.+....
T Consensus 223 ~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~ 287 (309)
T 3um7_A 223 WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVS 287 (309)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999987 59999999999999999998887665443
No 20
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=110.26 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=51.2
Q ss_pred CchhhHHHHHhhhhhccccccccccCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 10 NSIPLGLWWALVTMTTVGYGDMVPKTYV-------GMFVGALCALAGVLTIALPVPVIVSNFS 65 (123)
Q Consensus 10 ~s~~~aly~~~vt~tTVGyGDi~P~t~~-------gr~~~~~~~l~Gi~~~~~~i~~i~~~~~ 65 (123)
++|+||+||+++|+|||||||++|.|.. ||+++++++++|+++++++++.+.+.+.
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999985 6999999999999999998888876543
No 21
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.51 E-value=2.1e-14 Score=115.28 Aligned_cols=58 Identities=28% Similarity=0.611 Sum_probs=52.4
Q ss_pred CchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy11889 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPV-IVSNFSRF 67 (123)
Q Consensus 10 ~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~-i~~~~~~~ 67 (123)
++|++||||+++|+|||||||++|.|+.||+++++++++|++++++.++. +.+.+...
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 108 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAP 108 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999987 55544433
No 22
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.49 E-value=1.6e-15 Score=114.79 Aligned_cols=58 Identities=33% Similarity=0.587 Sum_probs=52.6
Q ss_pred CchhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 10 NSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSRF 67 (123)
Q Consensus 10 ~s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~ 67 (123)
++|.+|+||+++|+|||||||++|.|..||+++++++++|+++++++++.+.+.+...
T Consensus 44 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999998777654
No 23
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.42 E-value=2.8e-13 Score=103.57 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=55.4
Q ss_pred CCCchhhHHHHHhhhhhcccccccccc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 8 DFNSIPLGLWWALVTMTTVGYGDMVPK--TYVGMFVGALCALAGVLTIALPVPVIVSNFSRF 67 (123)
Q Consensus 8 ~f~s~~~aly~~~vt~tTVGyGDi~P~--t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~~ 67 (123)
.+.+|.+||||+++|+|||||||++|. ++.|++++.+.+++|+++++++++++...+.+-
T Consensus 88 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 88 NLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp CCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred cccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 578999999999999999999999997 689999999999999999999999998877654
No 24
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=99.37 E-value=7.3e-13 Score=101.36 Aligned_cols=59 Identities=19% Similarity=0.366 Sum_probs=54.6
Q ss_pred CCCchhhHHHHHhhhhhcccccccccc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 8 DFNSIPLGLWWALVTMTTVGYGDMVPK--TYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66 (123)
Q Consensus 8 ~f~s~~~aly~~~vt~tTVGyGDi~P~--t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~ 66 (123)
.+.+|.+||||+++|+|||||||++|. ++.|++++.+.+++|+++++++++++...+.+
T Consensus 91 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 91 QVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp TCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999975 89999999999999999999999988887754
No 25
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.26 E-value=1.7e-12 Score=96.36 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=53.1
Q ss_pred CCCCchhhHHHHHhhhhhccccc-ccc-ccCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 7 NDFNSIPLGLWWALVTMTTVGYG-DMV-PKTYVG----MFVGALCALAGVLTIALPVPVIVSNFSRFYSHAQ 72 (123)
Q Consensus 7 ~~f~s~~~aly~~~vt~tTVGyG-Di~-P~t~~g----r~~~~~~~l~Gi~~~~~~i~~i~~~~~~~~~~~~ 72 (123)
..|+++.+|+||+++++||+||| |+. |.+..| +.+++++++.|+++++++++++.+.+....++++
T Consensus 176 ~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~~ 247 (285)
T 3rvy_A 176 EWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEE 247 (285)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred cccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999 995 887754 8899999999999999999999999987765543
No 26
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.58 E-value=9.6e-05 Score=52.69 Aligned_cols=62 Identities=6% Similarity=0.147 Sum_probs=45.9
Q ss_pred CCCCCCCchhhHHHHHhhhhhccccccccc----cCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 4 NPENDFNSIPLGLWWALVTMTTVGYGDMVP----KTYVGMFV-GALCALAGVLTIALPVPVIVSNFS 65 (123)
Q Consensus 4 ~~~~~f~s~~~aly~~~vt~tTVGyGDi~P----~t~~gr~~-~~~~~l~Gi~~~~~~i~~i~~~~~ 65 (123)
..+..|+++.+|+|+.+.++|+.||+|+.. .++.+.++ ..++++.+..++.++++++.+.+.
T Consensus 158 ~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 158 DDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp TSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344579999999999999999999999832 23344444 444555567888888888887765
No 27
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=96.55 E-value=0.0032 Score=51.79 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=45.0
Q ss_pred chhhHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 11 SIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVSNFSR 66 (123)
Q Consensus 11 s~~~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~~ 66 (123)
++.+++||++.+++..| ++..|.+..+|++.++|+++++++.+...+.+.+.++.
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36789999999999999 78999999999999999999999999999999888764
No 28
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=73.69 E-value=3.6 Score=25.79 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=32.6
Q ss_pred CCCCchhhHHHHHhhhhhcccccccc--c---cCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy11889 7 NDFNSIPLGLWWALVTMTTVGYGDMV--P---KTYVGMFVGALCAL-AGVLTIALPVPVIVSNFSRF 67 (123)
Q Consensus 7 ~~f~s~~~aly~~~vt~tTVGyGDi~--P---~t~~gr~~~~~~~l-~Gi~~~~~~i~~i~~~~~~~ 67 (123)
..|+++..|+.-.+..+|+=|..|.. | ..+..-++.+.+++ ....++-++++++.+.+...
T Consensus 34 ~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~~ 100 (112)
T 4f4l_A 34 EWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAIT 100 (112)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC-------
T ss_pred ccccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34888888887777777776665432 2 23344455444444 44456666677777666544
No 29
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.53 E-value=20 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 45 CALAGVLTIALPVPVIVSNFSRF 67 (123)
Q Consensus 45 ~~l~Gi~~~~~~i~~i~~~~~~~ 67 (123)
.++.|++++++++-.+...+...
T Consensus 16 gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666555455444333
No 30
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=55.94 E-value=14 Score=29.16 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=32.0
Q ss_pred chhhHHHHHhhhhhcccc--ccc----cccCchhHHHHHHHHHHHHH
Q psy11889 11 SIPLGLWWALVTMTTVGY--GDM----VPKTYVGMFVGALCALAGVL 51 (123)
Q Consensus 11 s~~~aly~~~vt~tTVGy--GDi----~P~t~~gr~~~~~~~l~Gi~ 51 (123)
++.+|+.=+..++.|||- |.+ ..-++.+|++.++.|++|=.
T Consensus 423 ~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~~M~~GRL 469 (494)
T 3pjz_A 423 DELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFGRL 469 (494)
T ss_dssp CHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHHHHHHHHh
Confidence 567888888899999995 432 23578899999999998854
No 31
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=46.36 E-value=5.4 Score=18.80 Aligned_cols=19 Identities=16% Similarity=0.602 Sum_probs=13.4
Q ss_pred chhhHHHHHhhhhhccccc
Q psy11889 11 SIPLGLWWALVTMTTVGYG 29 (123)
Q Consensus 11 s~~~aly~~~vt~tTVGyG 29 (123)
++..|+||+--++.-.|-|
T Consensus 8 ~l~aa~wF~WGvllnsgi~ 26 (27)
T 2nr1_A 8 TLSSAMWFSWGVLLNSGIG 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhHHHhhHhheecccC
Confidence 4567889888777666544
No 32
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=39.54 E-value=39 Score=17.25 Aligned_cols=29 Identities=10% Similarity=0.329 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 37 VGMFVGALCALAGVLTIALPVPVIVSNFS 65 (123)
Q Consensus 37 ~gr~~~~~~~l~Gi~~~~~~i~~i~~~~~ 65 (123)
.+-+|.+..+.+++.++++.++.+.-.+.
T Consensus 3 ~~EIf~~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 3 AEFIAGTALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45677777777888888887777665544
No 33
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=36.33 E-value=61 Score=20.92 Aligned_cols=26 Identities=8% Similarity=0.232 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 44 LCALAGVLTIALPVPVIVSNFSRFYS 69 (123)
Q Consensus 44 ~~~l~Gi~~~~~~i~~i~~~~~~~~~ 69 (123)
+-+++-+++++++.++..-.+.....
T Consensus 4 iEllvviaIigiLaaia~p~~~~~~~ 29 (151)
T 3sok_A 4 IELMIVVAIIGILAAFAIPAYNDYIA 29 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555444444433
No 34
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=35.86 E-value=64 Score=20.49 Aligned_cols=22 Identities=9% Similarity=0.330 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11889 46 ALAGVLTIALPVPVIVSNFSRF 67 (123)
Q Consensus 46 ~l~Gi~~~~~~i~~i~~~~~~~ 67 (123)
+++-+++++++.++..-.+..+
T Consensus 6 llivi~Ii~il~~ia~p~~~~~ 27 (144)
T 1oqw_A 6 LMIVVAIIGILAAIAIPQYQNY 27 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444344433
No 35
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=33.46 E-value=35 Score=22.04 Aligned_cols=24 Identities=4% Similarity=0.247 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11889 44 LCALAGVLTIALPVPVIVSNFSRF 67 (123)
Q Consensus 44 ~~~l~Gi~~~~~~i~~i~~~~~~~ 67 (123)
+-+++-+++++++.++..-.+...
T Consensus 4 iEl~vvi~ii~il~~~~~p~~~~~ 27 (158)
T 2hi2_A 4 IELMIVIAIVGILAAVALPAYQDY 27 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444334333
No 36
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=33.37 E-value=43 Score=19.20 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=16.6
Q ss_pred hHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHH
Q psy11889 14 LGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTI 53 (123)
Q Consensus 14 ~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~ 53 (123)
+-|||=.-|+.. .|-+|+.++.++|++++
T Consensus 8 dpF~YDY~tLRi-----------gGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 8 SPFYYDWESLQL-----------GGLIFGGLLCIAGIALA 36 (67)
T ss_dssp SGGGGGGHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHhee-----------cchhhHHHHHHHHHHHH
Confidence 556665556544 34666666666665443
No 37
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=31.91 E-value=30 Score=20.06 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHH
Q psy11889 37 VGMFVGALCALAGVLT 52 (123)
Q Consensus 37 ~gr~~~~~~~l~Gi~~ 52 (123)
.|-+|+.++.++|+++
T Consensus 19 GGLifA~vLfi~GI~i 34 (72)
T 2jo1_A 19 GGLVIAGILFILGILI 34 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 3455655555555443
No 38
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=31.66 E-value=13 Score=29.37 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=25.3
Q ss_pred hhhHHHHHhhhhhccccc--cccccCchhHHHHHHHHHHHHH
Q psy11889 12 IPLGLWWALVTMTTVGYG--DMVPKTYVGMFVGALCALAGVL 51 (123)
Q Consensus 12 ~~~aly~~~vt~tTVGyG--Di~P~t~~gr~~~~~~~l~Gi~ 51 (123)
+.+|++-++...||.||. |+.--+...+++.++.|++|-+
T Consensus 307 l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~ 348 (494)
T 3pjz_A 307 FDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGC 348 (494)
T ss_dssp HHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSC
T ss_pred HHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCC
Confidence 445555566666887985 4444455667777777777643
No 39
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=29.98 E-value=47 Score=19.40 Aligned_cols=29 Identities=17% Similarity=0.419 Sum_probs=16.5
Q ss_pred hHHHHHhhhhhccccccccccCchhHHHHHHHHHHHHHHH
Q psy11889 14 LGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTI 53 (123)
Q Consensus 14 ~aly~~~vt~tTVGyGDi~P~t~~gr~~~~~~~l~Gi~~~ 53 (123)
+-|||=.-|+.. .|-+|+.++.++|++++
T Consensus 10 dpF~YDY~tLRi-----------gGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 10 ERFTYDYYRLRV-----------VGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp GGGCCCHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHhee-----------ccchhHHHHHHHHHHHH
Confidence 566665555543 34666666666665443
No 40
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=26.16 E-value=1e+02 Score=20.04 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=7.8
Q ss_pred CchhhHHHHHhhh
Q psy11889 10 NSIPLGLWWALVT 22 (123)
Q Consensus 10 ~s~~~aly~~~vt 22 (123)
..|+..+|--.+-
T Consensus 19 ~~~L~~l~~e~~~ 31 (138)
T 2k21_A 19 TPFLTKLWQETVQ 31 (138)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4566777765543
No 41
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=20.70 E-value=1.1e+02 Score=21.60 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11889 58 PVIVSNFSRFYSHAQA 73 (123)
Q Consensus 58 ~~i~~~~~~~~~~~~~ 73 (123)
+.....+...+.+..+
T Consensus 229 nl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 229 NLVVAICVDAMAILNQ 244 (285)
T ss_dssp HHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
Done!