RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11889
         (123 letters)



>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 103

 Score = 68.8 bits (168), Expect = 5e-17
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 2   HANPENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIV 61
              P     + P  LWW++ T TTVGYGD+ P T  G  V  +  +AG+ +  L    + 
Sbjct: 31  RGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALA 90

Query: 62  SNFSRFYSHAQ 72
           + F       +
Sbjct: 91  TWFVGREQERR 101


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 66.5 bits (162), Expect = 5e-16
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 1   MHANPENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVI 60
                     S     ++++ TM T+GYG ++P   +   +  L AL G+L +A+   +I
Sbjct: 50  GDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLI 109

Query: 61  VSNFSR 66
            + F+R
Sbjct: 110 YARFTR 115


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 65.4 bits (159), Expect = 1e-15
 Identities = 17/66 (25%), Positives = 29/66 (43%)

Query: 1   MHANPENDFNSIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVI 60
                           ++++ T+ TVGYGDM P+T     +  L    G+  IAL   ++
Sbjct: 51  DAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLV 110

Query: 61  VSNFSR 66
            + F+R
Sbjct: 111 FARFAR 116


>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
          {Archaeon Methanothermobacter thermautotrophicus
          [TaxId: 145262]}
          Length = 80

 Score = 58.2 bits (141), Expect = 3e-13
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 11 SIPLGLWWALVTMTTVGYGDMVPKTYVGMFVGALCALAGVLTIALPVPVIVS 62
          S  + L+W  VT+ TVGYGD  P T +GM+      + G+ T A+ V  ++ 
Sbjct: 27 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE 78


>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein
          {Streptomyces coelicolor [TaxId: 1902]}
          Length = 57

 Score = 46.0 bits (109), Expect = 1e-08
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 2  HANPENDFNSIPLGLWWALVTMTTVGY 28
             P     + P  LWWA  T TTVGY
Sbjct: 31 RGAPGAQLITYPRALWWACETATTVGY 57


>d2fkia1 d.198.3.1 (A:1-118) Hypothetical protein YjbR {Escherichia
           coli [TaxId: 562]}
          Length = 118

 Score = 26.8 bits (59), Expect = 0.50
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 69  SHAQARSKLPKKRRRVLP 86
           S+ QA + LP+++R++L 
Sbjct: 99  SYQQAVNLLPEEKRKLLV 116


>d2odfa1 c.56.5.9 (A:6-257) Hypothetical protein Atu2144
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 252

 Score = 27.0 bits (59), Expect = 0.68
 Identities = 9/63 (14%), Positives = 18/63 (28%)

Query: 46  ALAGVLTIALPVPVIVSNFSRFYSHAQARSKLPKKRRRVLPVEQPRPKRGESVNVINRRM 105
           A+A +L+      ++   FSR         + P        +                R 
Sbjct: 59  AVARLLSEKFHATLVYQRFSRLVYDCNRPPESPSAMPVKSEIYDIPGNFDLDEAERFART 118

Query: 106 TAI 108
           +A+
Sbjct: 119 SAL 121


>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 71

 Score = 23.1 bits (49), Expect = 5.0
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 76  KLPKKRRRVLPVEQPRPKRGESVNVINRRMTAIKNNPS 113
              ++    L  +   PK        N+R     + PS
Sbjct: 32  YPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPS 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 454,364
Number of extensions: 18280
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 10
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)