BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11896
(1043 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 530 bits (1365), Expect = e-150, Method: Compositional matrix adjust.
Identities = 286/646 (44%), Positives = 423/646 (65%), Gaps = 12/646 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
++ +RNIGI+AHID+GKTT TERIL+YTGRI ++ EV A MD ME ER+RGITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH---EGAATMDFMEQERERGITI 65
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ KA
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG ++R IP + +A ++L+E A+ DE + +LE + +E+++ A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-LNP 494
IR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV ++P
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
+G P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+H+N
Sbjct: 304 DPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 361
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+ D+
Sbjct: 362 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQ 421
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
+ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GKP+V
Sbjct: 422 EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQV 481
Query: 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732
A++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK ++
Sbjct: 482 AYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYI 539
Query: 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792
PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G
Sbjct: 540 PAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDP 599
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 600 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRA 645
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 82/108 (75%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVF 108
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 109 DSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 89/145 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVN 1023
G+G F M + Y +VQ++L+
Sbjct: 665 GRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 529 bits (1363), Expect = e-150, Method: Compositional matrix adjust.
Identities = 285/646 (44%), Positives = 422/646 (65%), Gaps = 12/646 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
++ +RNIGI+AHID+GKTT TERIL+YTGRI ++ EV A MD ME ER+RGITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVH---EGAATMDFMEQERERGITI 65
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ KA
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG ++R IP + +A ++L+E A+ DE + +LE + +E+++ A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-LNP 494
IR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV ++P
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
+G P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+H+N
Sbjct: 304 DPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 361
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+ D+
Sbjct: 362 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQ 421
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
+ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GKP+V
Sbjct: 422 EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQV 481
Query: 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732
A++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK ++
Sbjct: 482 AYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYI 539
Query: 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792
PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G
Sbjct: 540 PAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDP 599
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 600 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRA 645
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 81/108 (75%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME ER+RGITI +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVF 108
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 109 DSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 89/145 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVN 1023
G+G F M + Y +VQ++L+
Sbjct: 665 GRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 529 bits (1362), Expect = e-150, Method: Compositional matrix adjust.
Identities = 286/646 (44%), Positives = 422/646 (65%), Gaps = 12/646 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
++ +RNIGI+AHID+GKTT TERIL+YTGRI ++ EV A MD ME ER+RGITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH---EGAATMDFMEQERERGITI 65
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ KA
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG ++R IP + A ++L+E A+ DE + +LE + +E+++ A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDNAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-LNP 494
IR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV ++P
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
+G P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+H+N
Sbjct: 304 DPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 361
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+ D+
Sbjct: 362 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQ 421
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
+ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GKP+V
Sbjct: 422 EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQV 481
Query: 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732
A++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK ++
Sbjct: 482 AYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYI 539
Query: 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792
PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G
Sbjct: 540 PAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDP 599
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 600 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRA 645
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 82/108 (75%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVF 108
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 109 DSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 89/145 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVN 1023
G+G F M + Y +VQ++L+
Sbjct: 665 GRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 528 bits (1361), Expect = e-150, Method: Compositional matrix adjust.
Identities = 285/646 (44%), Positives = 422/646 (65%), Gaps = 12/646 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
++ +RNIGI+AHID+GKTT TERIL+YTGRI ++ EV A MD ME ER+RGITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH---EGAATMDFMEQERERGITI 65
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ KA
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG ++R IP + +A ++L+E A+ DE + +LE + +E+++ A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-LNP 494
IR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV ++P
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
+G P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+H+N
Sbjct: 304 DPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 361
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+ D+
Sbjct: 362 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQ 421
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
+ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GKP+V
Sbjct: 422 EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQV 481
Query: 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732
A++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK ++
Sbjct: 482 AYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYI 539
Query: 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792
PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G
Sbjct: 540 PAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDP 599
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 600 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRA 645
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 81/108 (75%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME ER+RGITI +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVF 108
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 109 DSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 89/145 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVN 1023
G+G F M + Y +VQ++L+
Sbjct: 665 GRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 526 bits (1356), Expect = e-149, Method: Compositional matrix adjust.
Identities = 285/646 (44%), Positives = 422/646 (65%), Gaps = 12/646 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
++ +RNIGI+AHID+GKTT TERIL+YTGRI ++ EV A MD ME ER+RGITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH---EGAATMDFMEQERERGITI 65
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ KA
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG ++R IP + +A ++L+E A+ DE + +LE + +E+++ A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-LNP 494
IR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV ++P
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
+G P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+H+N
Sbjct: 304 DPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 361
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+ D+
Sbjct: 362 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQ 421
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
+ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GKP+V
Sbjct: 422 EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQV 481
Query: 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732
A++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK ++
Sbjct: 482 AYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYI 539
Query: 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792
PA+ KG ++ + G L G V +++ L DG VDS+E++F +A A+K+A ++G
Sbjct: 540 PAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDP 599
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 600 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRA 645
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 82/108 (75%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVF 108
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 109 DSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 88/144 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG VDS+E++F +A A+K+A ++G ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLV 1022
G+G F M + Y +VQ++L+
Sbjct: 665 GRGSFVMFFDHYQEVPKQVQEKLI 688
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 526 bits (1356), Expect = e-149, Method: Compositional matrix adjust.
Identities = 285/646 (44%), Positives = 422/646 (65%), Gaps = 12/646 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
++ +RNI I+AHID+GKTT TERIL+YTGRI ++ EV A MD ME ER+RGITI
Sbjct: 9 LKRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVH---EGAATMDFMEQERERGITI 65
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ KA
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG ++R IP + +A ++L+E A+ DE + +LE + +E+++ A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-LNP 494
IR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV ++P
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
+G P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+H+N
Sbjct: 304 DPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 361
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+ D+
Sbjct: 362 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQ 421
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
+ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GKP+V
Sbjct: 422 EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQV 481
Query: 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732
A++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK ++
Sbjct: 482 AYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYI 539
Query: 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792
PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G
Sbjct: 540 PAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDP 599
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 600 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRA 645
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 82/108 (75%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVF 108
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 109 DSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 89/145 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVN 1023
G+G F M + Y +VQ++L+
Sbjct: 665 GRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 526 bits (1356), Expect = e-149, Method: Compositional matrix adjust.
Identities = 285/646 (44%), Positives = 422/646 (65%), Gaps = 12/646 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
++ +RNIGI+AHID+GKTT TERIL+YTGRI ++ EV A MD ME ER+RGITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH---EGAATMDFMEQERERGITI 65
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ KA
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG ++R IP + +A ++L+E A+ DE + +LE + +E+++ A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-LNP 494
IR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV ++P
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
+G P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+H+N
Sbjct: 304 DPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 361
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+ D+
Sbjct: 362 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQ 421
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
+ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GKP+V
Sbjct: 422 EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQV 481
Query: 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732
A++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK ++
Sbjct: 482 AYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYI 539
Query: 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792
PA+ KG ++ + G L G V +++ L DG VDS+E++F +A A+K+A ++G
Sbjct: 540 PAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDP 599
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 600 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRA 645
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 82/108 (75%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVF 108
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 109 DSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 88/145 (60%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG VDS+E++F +A A+K+A ++G ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVN 1023
G+G F M + Y +VQ++L+
Sbjct: 665 GRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 526 bits (1354), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/668 (43%), Positives = 422/668 (63%), Gaps = 27/668 (4%)
Query: 190 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG---RISEMHEVRGKDNVGAVMDSME 246
++ PI RNIGISAHID+GKTT TERILFYTG +I E+H + A MD ME
Sbjct: 1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH------DGAATMDWME 54
Query: 247 LERQRGITIQSAATYTLW-------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 299
E++RGITI SAAT W + H INIIDTPGHVDFT+EVER++RVLDGA++V C
Sbjct: 55 QEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYC 114
Query: 300 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIG 359
AVGGVQ Q+ TV RQ +Y VP IAF+NK+DR+GA+ +V+NQ++ ++G N LQ+ IG
Sbjct: 115 AVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIG 174
Query: 360 LGSETKGIIDLIQRKAI-YFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILG 418
G++DL++ KAI + + G E+IPAD+ + A Q LIE AE E L
Sbjct: 175 AEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELM 234
Query: 419 EMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVT- 477
E +L + ++E +IK A+R+ L + V G+A KNKGVQ +LDAV+DYLP+P +V
Sbjct: 235 EKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPA 294
Query: 478 -NYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYN 535
N +++G+ D + S D PF ALAFK+ F G LT+ R Y G + G+ + N
Sbjct: 295 INGILDDGK-DTPAERHASDD--EPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLN 351
Query: 536 VRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIY 594
+ R R+V++H+N+ E+++EV AGDI A G+ D +GDT D + I LE +
Sbjct: 352 SVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLC-DPDAPIILERME 410
Query: 595 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYA 654
+PV+S++++ D++ A+ R KEDP+F + D ES +T+++GMGELHL+I
Sbjct: 411 FPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIV 470
Query: 655 QRMEREYNCPVVLGKPKVAFKETLVQPF-DFDYLHKKQSGGSGQYGRVIGTLEPLPPSAN 713
RM+RE+N +GKP+VA++ET+ Q D + H KQSGG GQYG V+ + PL P +N
Sbjct: 471 DRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSN 530
Query: 714 TK-LEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNE 772
K EFI++ G +P ++PA+ KG ++ + G L+G V + + L G H VDS+E
Sbjct: 531 PKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSE 590
Query: 773 ISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD 832
++F LAA A K+ +++ +LEPIM VE+ TP E G V+ +++R G+L+G E +
Sbjct: 591 LAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVT 650
Query: 833 WVTIYAEM 840
V I+AE+
Sbjct: 651 GVKIHAEV 658
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 87/115 (75%), Gaps = 7/115 (6%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLW-------KDHNINIIDTPGHVDFTVEVERALRVL 74
A MD ME E++RGITI SAAT W + H INIIDTPGHVDFT+EVER++RVL
Sbjct: 47 AATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVL 106
Query: 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
DGA++V CAVGGVQ Q+ TV RQ +Y VP IAF+NK+DR+GA+ +V+NQ++ +
Sbjct: 107 DGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTR 161
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 90/144 (62%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L+G V + + L G H VDS+E++F LAA A K+ +++ +LEP
Sbjct: 556 GIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEP 615
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE+ TP E G V+ +++R G+L+G E + V I+AE+PL++MFG+A LRS T+
Sbjct: 616 IMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTK 675
Query: 999 GKGEFSMDYSRYSPALPEVQDRLV 1022
G+ ++M++ +Y A V ++
Sbjct: 676 GRASYTMEFLKYDEAPSNVAQAVI 699
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 525 bits (1353), Expect = e-149, Method: Compositional matrix adjust.
Identities = 293/663 (44%), Positives = 420/663 (63%), Gaps = 27/663 (4%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTG---RISEMHEVRGKDNVGAVMDSMELERQR 251
PI RNIGISAHID+GKTT TERILFYTG +I E+H + A MD ME E++R
Sbjct: 5 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH------DGAATMDWMEQEQER 58
Query: 252 GITIQSAATYTLW-------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV 304
GITI SAAT W + H INIIDTPGHVDFT+EVER++RVLDGA++V CAVGGV
Sbjct: 59 GITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV 118
Query: 305 QSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSET 364
Q Q+ TV RQ +Y VP IAF+NK+DR+GA+ +V+NQ++ ++G N LQ+ IG
Sbjct: 119 QPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHF 178
Query: 365 KGIIDLIQRKAI-YFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
G++DL++ KAI + + G E+IPAD+ + A Q LIE AE E L E +L
Sbjct: 179 TGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLG 238
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVT--NYAI 481
+ ++E +IK A+R+ L + V G+A KNKGVQ +LDAV+DYLP+P +V N +
Sbjct: 239 GEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGIL 298
Query: 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK 540
++G+ D + S D PF ALAFK+ F G LT+ R Y G + G+ + N
Sbjct: 299 DDGK-DTPAERHASDD--EPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAA 355
Query: 541 KVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPV 599
+ R R+V++H+N+ E+++EV AGDI A G+ D +GDT D + I LE + +PV
Sbjct: 356 RERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLC-DPDAPIILERMEFPEPV 414
Query: 600 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMER 659
+S++++ D++ A+ R KEDP+F + D ES +T+++GMGELHL+I RM+R
Sbjct: 415 ISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKR 474
Query: 660 EYNCPVVLGKPKVAFKETLVQPF-DFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTK-LE 717
E+N +GKP+VA++ET+ Q D + H KQSGG GQYG V+ + PL P +N K E
Sbjct: 475 EFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYE 534
Query: 718 FIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFIL 777
FI++ G +P ++PA+ KG ++ + G L+G V + + L G H VDS+E++F L
Sbjct: 535 FINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKL 594
Query: 778 AAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIY 837
AA A K+ +++ +LEPIM VE+ TP E G V+ +++R G+L+G E + V I+
Sbjct: 595 AASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIH 654
Query: 838 AEM 840
AE+
Sbjct: 655 AEV 657
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 87/115 (75%), Gaps = 7/115 (6%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLW-------KDHNINIIDTPGHVDFTVEVERALRVL 74
A MD ME E++RGITI SAAT W + H INIIDTPGHVDFT+EVER++RVL
Sbjct: 46 AATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVL 105
Query: 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
DGA++V CAVGGVQ Q+ TV RQ +Y VP IAF+NK+DR+GA+ +V+NQ++ +
Sbjct: 106 DGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTR 160
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 90/144 (62%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L+G V + + L G H VDS+E++F LAA A K+ +++ +LEP
Sbjct: 555 GIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEP 614
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE+ TP E G V+ +++R G+L+G E + V I+AE+PL++MFG+A LRS T+
Sbjct: 615 IMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTK 674
Query: 999 GKGEFSMDYSRYSPALPEVQDRLV 1022
G+ ++M++ +Y A V ++
Sbjct: 675 GRASYTMEFLKYDEAPSNVAQAVI 698
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 521 bits (1343), Expect = e-148, Method: Compositional matrix adjust.
Identities = 283/646 (43%), Positives = 419/646 (64%), Gaps = 12/646 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
++ +RNIGI+AHID+GKTT TERIL+YTGRI ++ EV A MD ME ER+RGITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH---EGAATMDFMEQERERGITI 65
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ KA
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG ++R IP + +A ++L+E A+ DE + +LE + +E+++ A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-LNP 494
IR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV ++P
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
+G P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+H+N
Sbjct: 304 DPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 361
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+ D+
Sbjct: 362 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQ 421
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
+ S+A+ R +E PTF PE+ T++SGMGEL LEI R++RE+ +GKP+V
Sbjct: 422 EKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREFKVDANVGKPQV 481
Query: 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732
A++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK ++
Sbjct: 482 AYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYI 539
Query: 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792
PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G
Sbjct: 540 PAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDP 599
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 600 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRA 645
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 81/108 (75%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME ER+RGITI +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVF 108
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 109 DSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 89/145 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVN 1023
G+G F M + Y +VQ++L+
Sbjct: 665 GRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 271/646 (41%), Positives = 404/646 (62%), Gaps = 40/646 (6%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
++ +RNIGI+AHID+GKTT TERIL+YTGRI
Sbjct: 4 LKRLRNIGIAAHIDAGKTTTTERILYYTGRI----------------------------- 34
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 35 --AVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 92
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ KA
Sbjct: 93 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 152
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG ++R IP + +A ++L+E A+ DE + +LE + +E+++ A
Sbjct: 153 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 212
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-LNP 494
IR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV ++P
Sbjct: 213 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 270
Query: 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
+G P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+H+N
Sbjct: 271 DPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 328
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+ D+
Sbjct: 329 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQ 388
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
+ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GKP+V
Sbjct: 389 EKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQV 448
Query: 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732
A++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK ++
Sbjct: 449 AYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYI 506
Query: 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVW 792
PA+ KG ++ + G L G V +++ L DG VDS+E++F +A A+K+A ++G
Sbjct: 507 PAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDP 566
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 567 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRA 612
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 68/89 (76%)
Query: 41 AATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 100
A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ ++
Sbjct: 35 AVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 94
Query: 101 YDVPCIAFINKLDRLGADPYRVINQMRQK 129
Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 95 YKVPRIAFANKMDKTGADLWLVIRTMQER 123
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 88/144 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG VDS+E++F +A A+K+A ++G ILEP
Sbjct: 512 GIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 571
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 572 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 631
Query: 999 GKGEFSMDYSRYSPALPEVQDRLV 1022
G+G F M + Y +VQ++L+
Sbjct: 632 GRGSFVMFFDHYQEVPKQVQEKLI 655
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 277/667 (41%), Positives = 410/667 (61%), Gaps = 22/667 (3%)
Query: 190 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELER 249
++ PI RNIGI AH+D+GKTT TER+LFYTG ++ EV + A D M E+
Sbjct: 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVH---DGAATTDWMVQEQ 60
Query: 250 QRGITIQSAATYTLWK-------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 302
+RGITI SAA T WK ++ +N+IDTPGHVDFT+EVER+LRVLDGA++V C
Sbjct: 61 ERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS 120
Query: 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGS 362
GV+ Q+ TV RQ +Y VP I ++NK+DR GA+ RV+ Q+++++GH +Q+ IG
Sbjct: 121 GVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQLAIGAEE 180
Query: 363 ETKGIIDLIQRKAIYF-EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 421
G +DLI+ KAIY+ + G R EEIPA+LK AE R ++E AE +E L +
Sbjct: 181 NFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKY 240
Query: 422 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 481
LEE +SE +IK+ +R TL + P + G++ KNKGV +LDAV+DYLP P E+ AI
Sbjct: 241 LEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIP--AI 298
Query: 482 ENGQEDKKVVLNPSR-DGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD 539
+ D + V + D PF +LAFK+ F G LT+ R Y G L G+ + N
Sbjct: 299 KGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKG 358
Query: 540 KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADP 598
KK RV R+V++H+N+ E+++EV AGDI AL G+ D +GDT + + I LE + +P
Sbjct: 359 KKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEK-PIILERMDFPEP 417
Query: 599 VVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 658
V+S++++ D++ A+ + +EDP+F D ES +T++SGMGELHL+I RM+
Sbjct: 418 VISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMK 477
Query: 659 REYNCPVVLGKPKVAFKETLVQP-FDFDYLHKKQSGGSGQYGR--VIGTLEPLPPSANTK 715
RE+ +GKP+VA++ET+ + + + +QSGG GQ+G + + + N
Sbjct: 478 REFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNIT 537
Query: 716 --LEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEI 773
L F +E VG VPK ++PAI KG ++ + G ++G + G++ + DG H VDSNE+
Sbjct: 538 EGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEM 597
Query: 774 SFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDW 833
+F +AA A KQ ++G ++LEPIM VE+ TP ++ G V+ + +R G++QG E
Sbjct: 598 AFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVSG 657
Query: 834 VTIYAEM 840
I AE+
Sbjct: 658 KVIRAEV 664
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 81/114 (71%), Gaps = 7/114 (6%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWK-------DHNINIIDTPGHVDFTVEVERALRVLD 75
A D M E++RGITI SAA T WK ++ +N+IDTPGHVDFT+EVER+LRVLD
Sbjct: 51 ATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLD 110
Query: 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
GA++V C GV+ Q+ TV RQ +Y VP I ++NK+DR GA+ RV+ Q++++
Sbjct: 111 GAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKR 164
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 94/146 (64%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G ++G + G++ + DG H VDSNE++F +AA A KQ ++G ++LEP
Sbjct: 562 GIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEP 621
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE+ TP ++ G V+ + +R G++QG E I AE+PL +MFG+A D+RS +Q
Sbjct: 622 IMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQ 681
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNE 1024
G+ +SM++S+Y+ A + + LV +
Sbjct: 682 GRASYSMEFSKYAEAPSNIVEALVKK 707
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/651 (42%), Positives = 393/651 (60%), Gaps = 11/651 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
+E RNIGI AHID+GKTT TERIL+YTGRI H++ + MD ME E+ RGITI
Sbjct: 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRI---HKIGETHEGASQMDWMEQEQDRGITI 63
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
SAAT W+ H +NIIDTPGHVDFTVEVER+LRVLDGA+ VL A GV+ QT TV RQ
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
Y VP I F+NK+D+LGA+ ++ + ++ NAA +Q+PIG E + IIDL++ K
Sbjct: 124 TTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKC 183
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG + EIP D AE R LIE VAE + L E +L ++ IS ++K+A
Sbjct: 184 FKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEA 243
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPS 495
IR++T +F PVL GTA KNKGVQ +LDAV+DYLP+P +V ++ V+ +
Sbjct: 244 IRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKA 303
Query: 496 RDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE 554
D F ALAFK+ + G+LT+ R Y G + G + N K+ RV RL+++H+N
Sbjct: 304 DDSAE-FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANS 362
Query: 555 MEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRD 613
++++ V +GDI A G+ D +GDT +KN+ I LES+ +PV+ +S++ + D+D
Sbjct: 363 RQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKND-IILESMEFPEPVIHLSVEPKSKADQD 421
Query: 614 NFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVA 673
++A+ + +EDPTFH D E+ + ++ GMGELHL+I RM++E+N +G P V+
Sbjct: 422 KMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481
Query: 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLP 733
++ET +QSGG GQYG V +E P EF + VG VP+ ++P
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFENAIVGGVVPREYIP 539
Query: 734 AIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQ 793
++ G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A ++
Sbjct: 540 SVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPV 599
Query: 794 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNE--GKDDWVTIYAEMCE 842
ILEP+M V I P E+ G ++ VT R G + G E G V Y + E
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSE 650
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/94 (65%), Positives = 72/94 (76%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
MD ME E+ RGITI SAAT W+ H +NIIDTPGHVDFTVEVER+LRVLDGA+ VL A
Sbjct: 50 MDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQ 109
Query: 85 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 118
GV+ QT TV RQ Y VP I F+NK+D+LGA+
Sbjct: 110 SGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN 143
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 82/133 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A ++ ILEP
Sbjct: 544 GLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEP 603
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
+M V I P E+ G ++ VT R G + G E + + + A +PL++MFG+A LRS+TQ
Sbjct: 604 MMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQ 663
Query: 999 GKGEFSMDYSRYS 1011
G+G ++M + Y+
Sbjct: 664 GRGTYTMYFDHYA 676
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/651 (42%), Positives = 393/651 (60%), Gaps = 11/651 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
+E RNIGI AHID+GKTT TERIL+YTGRI H++ + MD ME E+ RGITI
Sbjct: 7 LEKTRNIGIIAHIDAGKTTTTERILYYTGRI---HKIGETHEGASQMDWMEQEQDRGITI 63
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
SAAT W+ H +NIIDTPGHVDFTVEVER+LRVLDGA+ VL A GV+ QT TV RQ
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
Y VP I F+NK+D+LGA+ ++ + ++ NAA +Q+PIG E + IIDL++ K
Sbjct: 124 TTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKC 183
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG + EIP D AE R LIE VAE + L E +L ++ IS ++K+A
Sbjct: 184 FKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEA 243
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPS 495
IR++T +F PVL GTA KNKGVQ +LDAV+DYLP+P +V ++ V+ +
Sbjct: 244 IRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKA 303
Query: 496 RDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE 554
D F ALAFK+ + G+LT+ R Y G + G + N K+ RV RL+++H+N
Sbjct: 304 DDSAE-FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANS 362
Query: 555 MEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRD 613
++++ V +GDI A G+ D +GDT +KN+ I LES+ +PV+ +S++ + D+D
Sbjct: 363 RQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKND-IILESMEFPEPVIHLSVEPKSKADQD 421
Query: 614 NFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVA 673
++A+ + +EDPTFH D E+ + ++ GMGELHL+I RM++E+N +G P V+
Sbjct: 422 KMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481
Query: 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLP 733
++ET +QSGG GQYG V +E P EF + VG VP+ ++P
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFENAIVGGVVPREYIP 539
Query: 734 AIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQ 793
++ G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A ++
Sbjct: 540 SVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPV 599
Query: 794 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNE--GKDDWVTIYAEMCE 842
ILEP+M V I P E+ G ++ VT R G + G E G V Y + E
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSE 650
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/94 (65%), Positives = 72/94 (76%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
MD ME E+ RGITI SAAT W+ H +NIIDTPGHVDFTVEVER+LRVLDGA+ VL A
Sbjct: 50 MDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQ 109
Query: 85 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 118
GV+ QT TV RQ Y VP I F+NK+D+LGA+
Sbjct: 110 SGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN 143
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 82/133 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A ++ ILEP
Sbjct: 544 GLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEP 603
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
+M V I P E+ G ++ VT R G + G E + + + A +PL++MFG+A LRS+TQ
Sbjct: 604 MMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQ 663
Query: 999 GKGEFSMDYSRYS 1011
G+G ++M + Y+
Sbjct: 664 GRGTYTMYFDHYA 676
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/651 (42%), Positives = 392/651 (60%), Gaps = 11/651 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
+E RNIGI AHID+GKTT TERIL+YTGRI H++ + MD ME E+ RGITI
Sbjct: 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRI---HKIGETHEGASQMDWMEQEQDRGITI 63
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
SAAT W+ H +NIIDTPGHVD TVEVER+LRVLDGA+ VL A GV+ QT TV RQ
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
Y VP I F+NK+D+LGA+ ++ + ++ NAA +Q+PIG E + IIDL++ K
Sbjct: 124 TTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKC 183
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG + EIP D AE R LIE VAE + L E +L ++ IS ++K+A
Sbjct: 184 FKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEA 243
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPS 495
IR++T +F PVL GTA KNKGVQ +LDAV+DYLP+P +V ++ V+ +
Sbjct: 244 IRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKA 303
Query: 496 RDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE 554
D F ALAFK+ + G+LT+ R Y G + G + N K+ RV RL+++H+N
Sbjct: 304 DDSAE-FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANS 362
Query: 555 MEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRD 613
++++ V +GDI A G+ D +GDT +KN+ I LES+ +PV+ +S++ + D+D
Sbjct: 363 RQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKND-IILESMEFPEPVIHLSVEPKSKADQD 421
Query: 614 NFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVA 673
++A+ + +EDPTFH D E+ + ++ GMGELHL+I RM++E+N +G P V+
Sbjct: 422 KMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481
Query: 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLP 733
++ET +QSGG GQYG V +E P EF + VG VP+ ++P
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFENAIVGGVVPREYIP 539
Query: 734 AIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQ 793
++ G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A ++
Sbjct: 540 SVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPV 599
Query: 794 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNE--GKDDWVTIYAEMCE 842
ILEP+M V I P E+ G ++ VT R G + G E G V Y + E
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSE 650
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/94 (64%), Positives = 71/94 (75%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
MD ME E+ RGITI SAAT W+ H +NIIDTPGHVD TVEVER+LRVLDGA+ VL A
Sbjct: 50 MDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQ 109
Query: 85 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 118
GV+ QT TV RQ Y VP I F+NK+D+LGA+
Sbjct: 110 SGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN 143
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 82/133 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A ++ ILEP
Sbjct: 544 GLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEP 603
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
+M V I P E+ G ++ VT R G + G E + + + A +PL++MFG+A LRS+TQ
Sbjct: 604 MMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQ 663
Query: 999 GKGEFSMDYSRYS 1011
G+G ++M + Y+
Sbjct: 664 GRGTYTMYFDHYA 676
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/651 (42%), Positives = 392/651 (60%), Gaps = 11/651 (1%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
+E RNIGI AHID+GKTT TERIL+YTGRI H++ + MD ME E+ RGITI
Sbjct: 7 LEKTRNIGIIAHIDAGKTTTTERILYYTGRI---HKIGETHEGASQMDWMEQEQDRGITI 63
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
SAAT W+ H +NIIDTPGHVD TVEVER+LRVLDGA+ VL A GV+ QT TV RQ
Sbjct: 64 TSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA 123
Query: 316 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
Y VP I F+NK+D+LGA+ ++ + ++ NAA +Q+PIG E + IIDL++ K
Sbjct: 124 TTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKC 183
Query: 376 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435
+ LG + EIP D AE R LIE VAE + L E +L ++ IS ++K+A
Sbjct: 184 FKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEA 243
Query: 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPS 495
IR++T +F PVL GTA KNKGVQ +LDAV+DYLP+P +V ++ V+ +
Sbjct: 244 IRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKA 303
Query: 496 RDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE 554
D F ALAFK+ + G+LT+ R Y G + G + N K+ RV RL+++H+N
Sbjct: 304 DDSAE-FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANS 362
Query: 555 MEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRD 613
++++ V +GDI A G+ D +GDT +KN+ I LES+ +PV+ +S++ + D+D
Sbjct: 363 RQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKND-IILESMEFPEPVIHLSVEPKSKADQD 421
Query: 614 NFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVA 673
++A+ + +EDPTFH D E+ + ++ GMGELHL+I RM++E+N +G P V+
Sbjct: 422 KMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481
Query: 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLP 733
++ET +QSGG GQYG V +E P EF + VG VP+ ++P
Sbjct: 482 YRETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFENAIVGGVVPREYIP 539
Query: 734 AIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQ 793
++ G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A ++
Sbjct: 540 SVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPV 599
Query: 794 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNE--GKDDWVTIYAEMCE 842
ILEP+M V I P E+ G ++ VT R G + G E G V Y + E
Sbjct: 600 ILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSE 650
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/94 (64%), Positives = 71/94 (75%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
MD ME E+ RGITI SAAT W+ H +NIIDTPGHVD TVEVER+LRVLDGA+ VL A
Sbjct: 50 MDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQ 109
Query: 85 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 118
GV+ QT TV RQ Y VP I F+NK+D+LGA+
Sbjct: 110 SGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN 143
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 82/133 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A ++ ILEP
Sbjct: 544 GLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEP 603
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
+M V I P E+ G ++ VT R G + G E + + + A +PL++MFG+A LRS+TQ
Sbjct: 604 MMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQ 663
Query: 999 GKGEFSMDYSRYS 1011
G+G ++M + Y+
Sbjct: 664 GRGTYTMYFDHYA 676
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 256 bits (654), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 189/649 (29%), Positives = 320/649 (49%), Gaps = 47/649 (7%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELE-RQRGITIQS 257
IR + + H SGKTTLTE +L+ TG E RG+ G E + T+++
Sbjct: 9 IRTVALVGHAGSGKTTLTEALLYKTG----AKERRGRVEEGTTTTDYTPEAKLHRTTVRT 64
Query: 258 AATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 317
L++ H + ++D PG+ DF E+ AL D A++ + A GVQ T +R
Sbjct: 65 GVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER 124
Query: 318 YDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIY 377
+P + + KLD+ G D Y ++ +R +G + +P+ G + G+ID+ KA
Sbjct: 125 LGLPRMVVVTKLDK-GGDYYALLEDLRSTLGPILP-IDLPLYEGGKWVGLIDVFHGKAYR 182
Query: 378 FEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437
+E G+ R E+P + ++ + RQE++E + E DE L E +LE + ++ + ++KA
Sbjct: 183 YEN--GEE-REAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFH 239
Query: 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRD 497
+ PV + + + GV LL+ +L+ LP+P E R
Sbjct: 240 EAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTE--------------------RF 279
Query: 498 GKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEME 556
G P +A FK++ F GQ+ Y+R Y+G+L+ G+ + + +VR+ L ++
Sbjct: 280 GDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQS--EAGQVRLPHLYVPMGKDLL 337
Query: 557 DVEEVLAGDIFALFGVDCASG-----DTFVTDKNNSISLESIYVADPVVSMSIKAVNNKD 611
+VEE AG + GV A G + +K S + + DP V +++ D
Sbjct: 338 EVEEAEAGFVL---GVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPKGRTD 394
Query: 612 RDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671
+A+++ +EDP+ E+ E L+ G GELHL +R++ +Y V PK
Sbjct: 395 EARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPK 453
Query: 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPF 731
V ++ET+ + + +KKQ+GG GQYG V LEP ++ F G +P +
Sbjct: 454 VPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEP-----ASEYGFEWRITGGVIPSKY 508
Query: 732 LPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGV 791
AI +G K+ +KG L+G V G + ++ +G H VDS++++F +AA A K+ E
Sbjct: 509 QEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAH 568
Query: 792 WQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
+LEPI +++ P E G VL+ + R G + G E + ++AE+
Sbjct: 569 PVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEV 617
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 81/146 (55%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G K+ +KG L+G V G + ++ +G H VDS++++F +AA A K+ E +LEP
Sbjct: 515 GIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEP 574
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
I +++ P E G VL+ + R G + G E + ++AE+PL ++ + L T
Sbjct: 575 IYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTG 634
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNE 1024
G G +++++S Y+ P + R+V E
Sbjct: 635 GAGAYTLEFSHYAEVPPHLAQRIVQE 660
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 37 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 96
T+++ L++ H + ++D PG+ DF E+ AL D A++ + A GVQ T
Sbjct: 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT 120
Query: 97 QMKRYDVPCIAFINKLDRLGADPYRVINQMR 127
+R +P + + KLD+ G D Y ++ +R
Sbjct: 121 VAERLGLPRMVVVTKLDK-GGDYYALLEDLR 150
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 161/647 (24%), Positives = 299/647 (46%), Gaps = 73/647 (11%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
I NIG+ AH+D+GKTTLTE +L+ +G I+E+ V D D+ LERQRGITIQ+
Sbjct: 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSV---DKGTTRTDNTLLERQRGITIQTG 58
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
T W++ +NIIDTPGH+DF EV R+L VLDGAIL++ A GVQ+QT + +++
Sbjct: 59 ITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 118
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
+P I FINK+D+ G D V +++K L +E +I++K +
Sbjct: 119 GIPTIFFINKIDQNGIDLSTVYQDIKEK-------------LSAEI-----VIKQKVELY 160
Query: 379 EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438
N E + V EG++ L E ++ KS+ ++++
Sbjct: 161 PNVCVTNF---------------TESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESI 205
Query: 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDG 498
P+ G+A N G+ L++ + + + + G
Sbjct: 206 RFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF---------------------YSSTHRG 244
Query: 499 KHPFIALAFKLEAGKFGQ-LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMED 557
FK+E K Q L Y+R Y G L + + V +K++V+ + + E+
Sbjct: 245 PSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSV-RVSEKEKIKVTEMYTSINGELCK 303
Query: 558 VEEVLAGDIFAL----FGVDCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRD 613
++ +G+I L ++ GDT + + I P++ +++ + R+
Sbjct: 304 IDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIE-----NPHPLLQTTVEPSKPEQRE 358
Query: 614 NFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVA 673
A+ + DP ++ D + E ++S +G++ +E+ + ++ +Y+ + L +P V
Sbjct: 359 MLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVI 418
Query: 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLP 733
+ E ++ + +Y + + + + ++ PLP + + E ++G + + F
Sbjct: 419 YMERPLK--NAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYES-SVSLGY-LNQSFQN 474
Query: 734 AIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQ 793
A+++G + CE+G L G V ++ K G + S F + A ++Q ++ +
Sbjct: 475 AVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTE 533
Query: 794 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
+LEP +S +I P E+ N K + + K++ V + E+
Sbjct: 534 LLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEI 580
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 81/134 (60%)
Query: 26 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 85
D+ LERQRGITIQ+ T W++ +NIIDTPGH+DF EV R+L VLDGAIL++ A
Sbjct: 43 DNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD 102
Query: 86 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI 145
GVQ+QT + +++ +P I FINK+D+ G D V +++K S I + E P
Sbjct: 103 GVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPN 162
Query: 146 EYIRNIGISAHIDS 159
+ N S D+
Sbjct: 163 VCVTNFTESEQWDT 176
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G + CE+G L G V ++ K G + S F + A ++Q ++ ++LEP
Sbjct: 479 GIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEP 537
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
+S +I P E+ N K + + K++ V + EIP + + DL T
Sbjct: 538 YLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTN 597
Query: 999 GKG 1001
G+
Sbjct: 598 GRS 600
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 176 bits (447), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 139/479 (29%), Positives = 231/479 (48%), Gaps = 43/479 (8%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNV-GAVMDSMELERQRGITIQSA 258
R I +H D+GKTTLTE++L + G I ++ + A D ELE+QRGI++ ++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
+KD+ IN++DTPGH DFT + R L +D A+ V+ A GV+ +T+ + +
Sbjct: 74 VXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLR 133
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
P FINK DR +++++ + + A + PIG G KGI LI+ AIY
Sbjct: 134 HTPIXTFINKXDRDTRPSIELLDEIESILRIHCAPVTWPIGXGKYFKGIYHLIE-DAIYL 192
Query: 379 EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI-- 436
P G + R+ ES+R E I + E D+ LG++ E + +E ++ K
Sbjct: 193 YQP-GKHERV----------GESERIEGINN-PELDKKLGDLASELR--NEIELVKGASH 238
Query: 437 ---RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP-GEVTNYAIENGQEDKKVVL 492
R L + TP+ G+A+ N GV LLDA + P P G TN + +E+K
Sbjct: 239 PFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEK---- 294
Query: 493 NPSRDGKHPFIALAFKLEA----GKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLV 548
F FK++A G ++ ++R G+ +KG Y+VR K+++++ +
Sbjct: 295 ---------FSGFVFKIQANXDPGHRDRIAFLRIASGQYQKGXKAYHVRLKKEIQINNAL 345
Query: 549 RLHSNEMEDVEEVLAGDIFALFGVDCAS-GDTFVTDKNNSISLESIYVADPVVSMSIKAV 607
+ + E+ EE GDI L GDTF + + + ++ + +K
Sbjct: 346 TFXAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGIPNFASELFRLVRLK-- 403
Query: 608 NNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVV 666
+ + K + + ++E T F +S E ++ +G L ++ A R+E EYN V
Sbjct: 404 DPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCV 461
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
A D ELE+QRGI++ ++ +KD+ IN++DTPGH DFT + R L +D A+ V+
Sbjct: 55 ATSDWXELEKQRGISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVID 114
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 114
A GV+ +T+ + + P FINK DR
Sbjct: 115 AAKGVEPRTIKLXEVCRLRHTPIXTFINKXDR 146
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 130/481 (27%), Positives = 216/481 (44%), Gaps = 32/481 (6%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGK-DNVGAVMDSMELERQRGITIQSA 258
R I +H D+GKTT+TE++L + I V+G+ N A D ME+E+QRGI+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
+ D +N++DTPGH DF+ + R L +D ++V+ A GV+ +T + +
Sbjct: 74 VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR 133
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
D P + F+NKLDR DP +++++ ++ A + PIG G KG+ L + + +
Sbjct: 134 DTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLY 193
Query: 379 EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438
+ G ++ I L +L V E L + +E + + + +
Sbjct: 194 QSGKGHTIQEVRIVKGLNNP------DLDAAVGED---LAQQLRDELELVKGASNEFDKE 244
Query: 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP-GEVTNYAIENGQEDKKVVLNPSRD 497
L + TPV GTAL N GV +LD ++++ P P T+ EDK
Sbjct: 245 LFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDK--------- 295
Query: 498 GKHPFIALAFKLEAG----KFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
F FK++A ++ +MR GK KG + VRT K V +S + +
Sbjct: 296 ----FTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAG 351
Query: 554 EMEDVEEVLAGDIFALFGVDCAS-GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
+ VEE GDI L GDTF + + I P + I+ + +
Sbjct: 352 DRSHVEEAYPGDILGLHNHGTIQIGDTFT--QGEMMKFTGIPNFAPELFRRIRLKDPLKQ 409
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
K + + ++E F + + +V +G L ++ R++ EYN V V
Sbjct: 410 KQLLKGLVQLSEEGAV-QVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNV 468
Query: 673 A 673
A
Sbjct: 469 A 469
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 15 VRGK-DNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV 73
V+G+ N A D ME+E+QRGI+I ++ + D +N++DTPGH DF+ + R L
Sbjct: 46 VKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTA 105
Query: 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
+D ++V+ A GV+ +T + + D P + F+NKLDR DP +++++
Sbjct: 106 VDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEV 158
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 130/481 (27%), Positives = 216/481 (44%), Gaps = 32/481 (6%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGK-DNVGAVMDSMELERQRGITIQSA 258
R I +H D+GKTT+TE++L + I V+G+ N A D ME+E+QRGI+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
+ D +N++DTPGH DF+ + R L +D ++V+ A GV+ +T + +
Sbjct: 74 VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR 133
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
D P + F+NKLDR DP +++++ ++ A + PIG G KG+ L + + +
Sbjct: 134 DTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLY 193
Query: 379 EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438
+ G ++ I L +L V E L + +E + + + +
Sbjct: 194 QSGKGHTIQEVRIVKGLNNP------DLDAAVGED---LAQQLRDELELVKGASNEFDKE 244
Query: 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP-GEVTNYAIENGQEDKKVVLNPSRD 497
L + TPV GTAL N GV +LD ++++ P P T+ EDK
Sbjct: 245 LFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDK--------- 295
Query: 498 GKHPFIALAFKLEAG----KFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
F FK++A ++ +MR GK KG + VRT K V +S + +
Sbjct: 296 ----FTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAG 351
Query: 554 EMEDVEEVLAGDIFALFGVDCAS-GDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
+ VEE GDI L GDTF + + I P + I+ + +
Sbjct: 352 DRSHVEEAYPGDILGLHNHGTIQIGDTFT--QGEMMKFTGIPNFAPELFRRIRLKDPLKQ 409
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672
K + + ++E F + + +V +G L ++ R++ EYN V V
Sbjct: 410 KQLLKGLVQLSEEGAV-QVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNV 468
Query: 673 A 673
A
Sbjct: 469 A 469
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 15 VRGK-DNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV 73
V+G+ N A D ME+E+QRGI+I ++ + D +N++DTPGH DF+ + R L
Sbjct: 46 VKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTA 105
Query: 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
+D ++V+ A GV+ +T + + D P + F+NKLDR DP +++++
Sbjct: 106 VDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEV 158
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/484 (25%), Positives = 212/484 (43%), Gaps = 54/484 (11%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNV-GAVMDSMELERQRGITIQSAA 259
I +H D+GKTTLTE++L + G I V+ + A D M +ER+RGI++ ++
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD 319
++D +N++DTPGH DF+ + R L +D A++V+ A GV++QT + +
Sbjct: 93 MQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA 152
Query: 320 VPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFE 379
P + F+NK+DR P V+ + Q + A + PIG+GS KG DL+ ++ F
Sbjct: 153 TPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFS 212
Query: 380 GPLG------------DNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSI 427
G D+ +++E D +AE R +L LEE
Sbjct: 213 ATHGGRIQSGIVIHGADDPQLDEYLGD---QAEQLRMDL-------------ALLEEAGT 256
Query: 428 SEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQED 487
D+ + L + TPV G+A+ N GV+ +LD +++ P P +
Sbjct: 257 PFDEER------YLKGELTPVFFGSAINNFGVREMLDMFVEFAPGP---------QPRPA 301
Query: 488 KKVVLNPSRDGKHPFIALAFKLEA----GKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR 543
V+ P G+ F + FK++A ++ ++R G +G + + RT K V
Sbjct: 302 ATRVVEP---GEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVT 358
Query: 544 VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS-GDTFVTDKNNSISLESIYVADPVVSM 602
V+ + + VEE GDI + GDTF T+ + I P
Sbjct: 359 VANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTF-TESKEVLKFVGIPNFAPEHFR 417
Query: 603 SIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYN 662
++ N K +++ +E F + + ++ +G L ++ R+ EY
Sbjct: 418 RVRLKNPLKAKQLQKGLEQLAEEG-AVQLFRPLVNNDYILGAVGVLQFDVIVARLADEYG 476
Query: 663 CPVV 666
V
Sbjct: 477 VDAV 480
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 62/106 (58%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
A D M +ER+RGI++ ++ ++D +N++DTPGH DF+ + R L +D A++V+
Sbjct: 73 ATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVID 132
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128
A GV++QT + + P + F+NK+DR P V+ + Q
Sbjct: 133 AAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQ 178
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 96/158 (60%), Gaps = 11/158 (6%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
IRN I AHID GK+TL++RI+ G +S+ ++ V+DSM+LER+RGITI++
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSD------REMEAQVLDSMDLERERGITIKAQ 57
Query: 259 ATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 313
+ +K + +N IDTPGHVDF+ EV R+L +GA+LV+ A GV++QTL
Sbjct: 58 SVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117
Query: 314 QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNA 351
D+ + +NK+D ADP RV ++ VG +A
Sbjct: 118 TAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA 155
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 5/108 (4%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAI 78
V+DSM+LER+RGITI++ + +K + +N IDTPGHVDF+ EV R+L +GA+
Sbjct: 40 VLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGAL 99
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
LV+ A GV++QTL D+ + +NK+D ADP RV ++
Sbjct: 100 LVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEI 147
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 514 FGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVD 573
G ++ +R G LRKG+ + + T + RL + + + D E+ G++ L
Sbjct: 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRL-GIFTPKQVDRTELKCGEVGWLV--- 259
Query: 574 CA--------SGDTFVTDKNNS-ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTK 624
CA GDT +N + +L P V + V++ D + F A+ + +
Sbjct: 260 CAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSL 319
Query: 625 EDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 675
D + FY+PES L G +G LH+EI +R+EREY+ ++ P V ++
Sbjct: 320 NDASL--FYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYE 373
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 932 VWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLND-MFGFA 990
++++ EPI + P + G+V+ L ++ G+ + V + EIP+ + + F
Sbjct: 396 IYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFF 455
Query: 991 GDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVN 1023
L+S+++G ++ R+ + D L+N
Sbjct: 456 DRLKSTSRGYASLDYNFKRFQASDMVRVDVLIN 488
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 96/158 (60%), Gaps = 11/158 (6%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
IRN I AHID GK+TL++RI+ G +S+ ++ V+DSM+LER+RGITI++
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSD------REMEAQVLDSMDLERERGITIKAQ 57
Query: 259 ATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 313
+ +K + +N IDTPGHVDF+ EV R+L +GA+LV+ A GV++QTL
Sbjct: 58 SVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117
Query: 314 QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNA 351
D+ + +NK+D ADP RV ++ VG +A
Sbjct: 118 TAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA 155
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 5/108 (4%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAI 78
V+DSM+LER+RGITI++ + +K + +N IDTPGHVDF+ EV R+L +GA+
Sbjct: 40 VLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGAL 99
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
LV+ A GV++QTL D+ + +NK+D ADP RV ++
Sbjct: 100 LVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEI 147
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 514 FGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVD 573
G ++ +R G LRKG+ + + T + RL + + + D E+ G++ L
Sbjct: 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRL-GIFTPKQVDRTELKCGEVGWLV--- 259
Query: 574 CA--------SGDTFVTDKNNS-ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTK 624
CA GDT +N + +L P V + V++ D + F A+ + +
Sbjct: 260 CAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSL 319
Query: 625 EDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 675
D + FY+PES L G +G LH+EI +R+EREY+ ++ P V ++
Sbjct: 320 NDASL--FYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYE 373
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 932 VWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLND-MFGFA 990
++++ EPI + P + G+V+ L ++ G+ + V + EIP+ + + F
Sbjct: 396 IYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFF 455
Query: 991 GDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVN 1023
L+S+++G ++ R+ + D L+N
Sbjct: 456 DRLKSTSRGYASLDYNFKRFQASDMVRVDVLIN 488
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 96/155 (61%), Gaps = 11/155 (7%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
+RN I AH+D GK+TL +R+L YTG ISE ++ ++D++++ER+RGIT++
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISE------REKREQLLDTLDVERERGITVKXQ 59
Query: 259 ATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 313
A +K + +++IDTPGHVDF+ EV RAL +GA+L++ A G+++QT+
Sbjct: 60 AVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW 119
Query: 314 QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348
+ D+ I INK+D AD RV Q+ + +G
Sbjct: 120 KAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLG 154
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAI 78
++D++++ER+RGIT++ A +K + +++IDTPGHVDF+ EV RAL +GA+
Sbjct: 42 LLDTLDVERERGITVKXQAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGAL 101
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128
L++ A G+++QT+ + D+ I INK+D AD RV Q+ +
Sbjct: 102 LLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEE 151
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 36/239 (15%)
Query: 449 LVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 508
++ +A + G++ +L+A+++ +P P D + P AL F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP---------------------KGDPQKPLKALIFD 199
Query: 509 LEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIF 567
+ G + ++R + G+++ G+ I T K+ V+ V + + +++ AGD+
Sbjct: 200 SYYDPYRGAVAFVRIFDGEVKPGDKIXLXSTGKEYEVTE-VGAQTPKXTKFDKLSAGDVG 258
Query: 568 ALFGV-----DCASGDTFVTDKNNSI-SLESIYVADPVVSMSIKAVNNKDRDNFSKAVQR 621
+ D GDT KN + + A P V I + + A+++
Sbjct: 259 YIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPXVYAGIYPAEDTTYEELRDALEK 318
Query: 622 FTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 675
+ D Y+PES L G +G LH EI +R+EREY ++ P V ++
Sbjct: 319 YAINDAAI--VYEPESSPALGXGFRVGFLGLLHXEIVQERLEREYGVKIITTAPNVIYR 375
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 96/155 (61%), Gaps = 11/155 (7%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
+RN I AH+D GK+TL +R+L YTG ISE ++ ++D++++ER+RGIT++
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISE------REKREQLLDTLDVERERGITVKMQ 59
Query: 259 ATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 313
A +K + +++IDTPGHVDF+ EV RAL +GA+L++ A G+++QT+
Sbjct: 60 AVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW 119
Query: 314 QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348
+ D+ I INK+D AD RV Q+ + +G
Sbjct: 120 KAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLG 154
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAI 78
++D++++ER+RGIT++ A +K + +++IDTPGHVDF+ EV RAL +GA+
Sbjct: 42 LLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGAL 101
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128
L++ A G+++QT+ + D+ I INK+D AD RV Q+ +
Sbjct: 102 LLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEE 151
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 36/239 (15%)
Query: 449 LVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 508
++ +A + G++ +L+A+++ +P P D + P AL F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP---------------------KGDPQKPLKALIFD 199
Query: 509 LEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIF 567
+ G + ++R + G+++ G+ I + T K+ V+ V + +M +++ AGD+
Sbjct: 200 SYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTE-VGAQTPKMTKFDKLSAGDVG 258
Query: 568 ALFGV-----DCASGDTFVTDKNNSI-SLESIYVADPVVSMSIKAVNNKDRDNFSKAVQR 621
+ D GDT KN + + A P+V I + + A+++
Sbjct: 259 YIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEK 318
Query: 622 FTKEDPTFHFFYDPESKETL-----VSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFK 675
+ D Y+PES L V +G LH+EI +R+EREY ++ P V ++
Sbjct: 319 YAINDAAI--VYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYR 375
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 21/149 (14%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
+RN+ + AH+D GK+TLT+ ++ G IS K D+ + E++RGITI+S
Sbjct: 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISA-----AKAGEARFTDTRKDEQERGITIKST 73
Query: 259 AT--YTLWKDHN--------------INIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 302
A Y+ D + IN+ID+PGHVDF+ EV ALRV DGA++V+ +
Sbjct: 74 AISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE 133
Query: 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDR 331
GV QT TV RQ + + INK+DR
Sbjct: 134 GVCVQTETVLRQALGERIKPVVVINKVDR 162
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/504 (20%), Positives = 192/504 (38%), Gaps = 107/504 (21%)
Query: 385 NLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK 444
N + +EIP L+K +E V +GDE D++ + RK
Sbjct: 290 NFKKDEIPVLLEK---------LEIVLKGDE--------------KDLEGKALLKVVMRK 326
Query: 445 FTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQE----DKKVVLNPSRDGKH 500
F P LL+ ++ +LP+P Y E E D + + D K
Sbjct: 327 FLP----------AADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKA 376
Query: 501 PFIALAFKL----EAGKFGQLTYMRCYQGKLRKGEMIY----NVRTDKK-----VRVSRL 547
+ K+ + G+F + R + G ++ G+ + N KK + R+
Sbjct: 377 DLMLYVSKMVPTSDKGRF--YAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRV 434
Query: 548 VRLHSNEMEDVEEVLAGDIFALFGVD---CASGDTFVTDKNNSISLESIYVADPVVSMSI 604
V + +E +++ AG+I L G+D +G ++ +++ + V+ PVV +++
Sbjct: 435 VLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVS-PVVQVAV 493
Query: 605 KAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NC 663
+ N D + ++R +K DP Y ES E +V+G GELHLEI Q +E ++
Sbjct: 494 EVKNANDLPKLVEGLKRLSKSDPCV-LTYMSESGEHIVAGTGELHLEICLQDLEHDHAGV 552
Query: 664 PVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLP-------------- 709
P+ + P VA++ET+ + + S ++ R+ EP+
Sbjct: 553 PLKISPPVVAYRETV----ESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINP 608
Query: 710 -----------------------------PSANTKLEFIDETVGTNVPKPFLPAIIKGFK 740
P N ID+T +++ F+
Sbjct: 609 RDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQ 668
Query: 741 QMCEKGCLSGSRVAGVRMVLKDGDNH--MVDSNEISFILAAHGAMKQAYEEGVWQILEPI 798
++G + G + VR+ + D H + I A + +I EP+
Sbjct: 669 WATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPV 728
Query: 799 MSVEISTPIEFQGSVLNLVTKRHG 822
VEI P + G + +++ K+ G
Sbjct: 729 FLVEIQCPEQAVGGIYSVLNKKRG 752
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 16/105 (15%)
Query: 26 DSMELERQRGITIQSAAT--YTLWKDHN--------------INIIDTPGHVDFTVEVER 69
D+ + E++RGITI+S A Y+ D + IN+ID+PGHVDF+ EV
Sbjct: 58 DTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTA 117
Query: 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 114
ALRV DGA++V+ + GV QT TV RQ + + INK+DR
Sbjct: 118 ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK--DDWVTIYAEIPLNDMFGFAG 991
+I EP+ VEI P + G + +++ K+ G + E + T+ A +P+N+ FGF G
Sbjct: 723 KIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTG 782
Query: 992 DLRSSTQGKGEFSMDYSRYS 1011
+LR +T G+ M + +S
Sbjct: 783 ELRQATGGQAFPQMVFDHWS 802
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 21/149 (14%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
+RN+ + AH+D GK+TLT+ ++ G IS K D+ + E++RGITI+S
Sbjct: 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISA-----AKAGEARFTDTRKDEQERGITIKST 73
Query: 259 AT--YTLWKDHN--------------INIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 302
A Y+ D + IN+ID+PGHVDF+ EV ALRV DGA++V+ +
Sbjct: 74 AISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE 133
Query: 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDR 331
GV QT TV RQ + + INK+DR
Sbjct: 134 GVCVQTETVLRQALGERIKPVVVINKVDR 162
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/504 (20%), Positives = 192/504 (38%), Gaps = 107/504 (21%)
Query: 385 NLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK 444
N + +EIP L+K +E V +GDE D++ + RK
Sbjct: 290 NFKKDEIPVLLEK---------LEIVLKGDE--------------KDLEGKALLKVVMRK 326
Query: 445 FTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQE----DKKVVLNPSRDGKH 500
F P LL+ ++ +LP+P Y E E D + + D K
Sbjct: 327 FLP----------AADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKA 376
Query: 501 PFIALAFKL----EAGKFGQLTYMRCYQGKLRKGEMIY----NVRTDKK-----VRVSRL 547
+ K+ + G+F + R + G ++ G+ + N KK + R+
Sbjct: 377 DLMLYVSKMVPTSDKGRF--YAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRV 434
Query: 548 VRLHSNEMEDVEEVLAGDIFALFGVD---CASGDTFVTDKNNSISLESIYVADPVVSMSI 604
V + +E +++ AG+I L G+D +G ++ +++ + V+ PVV +++
Sbjct: 435 VLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVS-PVVQVAV 493
Query: 605 KAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NC 663
+ N D + ++R +K DP Y ES E +V+G GELHLEI Q +E ++
Sbjct: 494 EVKNANDLPKLVEGLKRLSKSDPCV-LTYMSESGEHIVAGTGELHLEICLQDLEHDHAGV 552
Query: 664 PVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLP-------------- 709
P+ + P VA++ET+ + + S ++ R+ EP+
Sbjct: 553 PLKISPPVVAYRETV----ESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINP 608
Query: 710 -----------------------------PSANTKLEFIDETVGTNVPKPFLPAIIKGFK 740
P N ID+T +++ F+
Sbjct: 609 RDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQ 668
Query: 741 QMCEKGCLSGSRVAGVRMVLKDGDNH--MVDSNEISFILAAHGAMKQAYEEGVWQILEPI 798
++G + G + VR+ + D H + I A + +I EP+
Sbjct: 669 WATKEGPIFGEEMRSVRVNILDVTLHADAIXRGGGQIIPTMRRATYAGFLLADPKIQEPV 728
Query: 799 MSVEISTPIEFQGSVLNLVTKRHG 822
VEI P + G + +++ K+ G
Sbjct: 729 FLVEIQCPEQAVGGIYSVLNKKRG 752
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 16/105 (15%)
Query: 26 DSMELERQRGITIQSAAT--YTLWKDHN--------------INIIDTPGHVDFTVEVER 69
D+ + E++RGITI+S A Y+ D + IN+ID+PGHVDF+ EV
Sbjct: 58 DTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTA 117
Query: 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 114
ALRV DGA++V+ + GV QT TV RQ + + INK+DR
Sbjct: 118 ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK--DDWVTIYAEIPLNDMFGFAG 991
+I EP+ VEI P + G + +++ K+ G + E + T+ A +P+N+ FGF G
Sbjct: 723 KIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTG 782
Query: 992 DLRSSTQGKGEFSMDYSRYS 1011
+LR +T G+ M + +S
Sbjct: 783 ELRQATGGQAFPQMVFDHWS 802
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E+IR N+G H+D GKTTLT + F T + EV+ ++ D ER R
Sbjct: 4 EFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
GITI +A Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 60 GITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 311 VNRQMKRYDVPCI-AFINKLD 330
++ VP I F+NK+D
Sbjct: 119 HILLARQVGVPYIVVFMNKVD 139
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 113
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 66/144 (45%), Gaps = 21/144 (14%)
Query: 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATY 261
+ I H+D GKTTL + I R S++ E + GIT A
Sbjct: 11 VTIMGHVDHGKTTLLDAI-----RHSKVTE----------------QEAGGITQHIGAYQ 49
Query: 262 TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 321
D I +DTPGH FT R +V D ILV+ A GV QT+ K +VP
Sbjct: 50 VTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP 109
Query: 322 CIAFINKLDRLGADPYRVINQMRQ 345
I INK+D+ A+P RV+ ++ +
Sbjct: 110 IIVAINKMDKPEANPDRVMQELME 133
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 48/94 (51%)
Query: 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 94
GIT A D I +DTPGH FT R +V D ILV+ A GV QT+
Sbjct: 40 GITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEA 99
Query: 95 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128
K +VP I INK+D+ A+P RV+ ++ +
Sbjct: 100 INHAKAANVPIIVAINKMDKPEANPDRVMQELME 133
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E+IR N+G H+D GKTTLT + F T + EV+ ++ D ER R
Sbjct: 4 EFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
GITI +A Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 60 GITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 311 VNRQMKRYDVPCI-AFINKLD 330
++ VP I F+NK+D
Sbjct: 119 HILLARQVGVPYIVVFMNKVD 139
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 113
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E+IR N+G H+D GKTTLT + + T + EV+ ++ D ER R
Sbjct: 4 EFIRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
GITI +A Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 60 GITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 311 VNRQMKRYDVPCI-AFINKLD 330
++ VP I F+NK+D
Sbjct: 119 HILLARQVGVPYIVVFMNKVD 139
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 113
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E++R N+G H+D GKTTLT + + T + EV+ ++ D ER R
Sbjct: 4 EFVRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
GITI +A Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 60 GITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 311 VNRQMKRYDVPCI-AFINKLD 330
++ VP I F+NK+D
Sbjct: 119 HILLARQVGVPYIVVFMNKVD 139
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 113
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E+IR N+G H+D GKTTLT + + + EV+ ++ D ER R
Sbjct: 4 EFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
GITI +A Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 60 GITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 311 VNRQMKRYDVPCI-AFINKLD 330
++ VP I F+NK+D
Sbjct: 119 HILLARQVGVPYIVVFMNKVD 139
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 113
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E+IR N+G H+D GKTTLT + + + EV+ ++ D ER R
Sbjct: 4 EFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
GITI +A Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 60 GITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 311 VNRQMKRYDVPCI-AFINKLD 330
++ VP I F+NK+D
Sbjct: 119 HILLARQVGVPYIVVFMNKVD 139
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 113
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E++R N+G H+D GKTTLT + + + EV+ ++ D ER R
Sbjct: 4 EFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
GITI +A Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 60 GITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 311 VNRQMKRYDVPCI-AFINKLD 330
++ VP I F+NK+D
Sbjct: 119 HILLARQVGVPYIVVFMNKVD 139
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 113
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E++R N+G H+D GKTTLT + + + EV+ ++ D ER R
Sbjct: 4 EFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
GITI +A Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 60 GITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 311 VNRQMKRYDVPCI-AFINKLD 330
++ VP I F+NK+D
Sbjct: 119 HILLARQVGVPYIVVFMNKVD 139
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 113
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E++R N+G H+D GKTTLT + + + EV+ ++ D ER R
Sbjct: 4 EFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI----DKAPEERAR 59
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
GITI +A Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 60 GITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 311 VNRQMKRYDVPCI-AFINKLD 330
++ VP I F+NK+D
Sbjct: 119 HILLARQVGVPYIVVFMNKVD 139
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 113
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E++R N+G H+D GKTTLT + + + EV+ ++ D ER R
Sbjct: 5 EFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI----DKAPEERAR 60
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
GITI +A Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 61 GITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE 119
Query: 311 VNRQMKRYDVPCI-AFINKLD 330
++ VP I F+NK+D
Sbjct: 120 HILLARQVGVPYIVVFMNKVD 140
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 51 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 109
Query: 84 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 113
G QT ++ VP I F+NK+D
Sbjct: 110 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 140
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 940 MSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQG 999
M VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQG
Sbjct: 1 MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQG 60
Query: 1000 KGEFSMDY 1007
+G F M +
Sbjct: 61 RGSFVMFF 68
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 30/198 (15%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+GI HID GKTTL+ ++L S D + ++RGITI +
Sbjct: 21 NLGIFGHIDHGKTTLS-KVLTEIASTS-------------AHDKLPESQKRGITIDIGFS 66
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
+++ I ++D PGH D V A ++D A++V+ A G ++QT + +++
Sbjct: 67 AFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNI 126
Query: 321 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ----IPI----GLG-SETKGII--- 368
P I I K D G + + + + + + L+ IPI G G E K +I
Sbjct: 127 PIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITT 186
Query: 369 ----DLIQRKAIYFEGPL 382
++I+ YF+ PL
Sbjct: 187 LNNAEIIRNTESYFKMPL 204
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%)
Query: 26 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 85
D + ++RGITI + +++ I ++D PGH D V A ++D A++V+ A
Sbjct: 49 DKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE 108
Query: 86 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYR 121
G ++QT + +++P I I K D G + +
Sbjct: 109 GPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIK 144
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 36/180 (20%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRI---------SEMHEV-RGKDNVGAVMDSMELERQ 250
N+ + H+DSGK+T T +++ G I E E+ +G V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 251 RGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 306
RGITI A LWK + + +ID PGH DF + D AIL++ GGV
Sbjct: 69 RGITIDIA----LWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIA--GGVGE 122
Query: 307 QTLTVNRQMKRYDVPCIAF----------INKLDRLGADPYRV------INQMRQKVGHN 350
+++ + + +AF +NK+D + D R + +KVG+N
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 182
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 16 RGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERAL 71
+G V+D ++ ER+RGITI A LWK + + +ID PGH DF +
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIA----LWKFETPKYQVTVIDAPGHRDFIKNMITGT 106
Query: 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF----------INKLDRLGADPYR 121
D AIL++ GGV +++ + + +AF +NK+D + D R
Sbjct: 107 SQADCAILIIA--GGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESR 164
Query: 122 VINQMRQKTSRWI 134
++ ++TS +I
Sbjct: 165 -FQEIVKETSNFI 176
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATY 261
+ I H+D GKTTL +++ R +++ A M++ + + G A
Sbjct: 7 VTIMGHVDHGKTTLLDKL-----RKTQV----------AAMEAGGITQHIG-----AFLV 46
Query: 262 TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 321
+L I +DTPGH F+ R +V D ILV+ A GV QT+ + K VP
Sbjct: 47 SLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP 106
Query: 322 CIAFINKLDRLGADPYRVINQM 343
+ INK D+ ADP +V ++
Sbjct: 107 IVLAINKCDKAEADPEKVKKEL 128
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 51 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFIN 110
I +DTPGH F+ R +V D ILV+ A GV QT+ + K VP + IN
Sbjct: 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAIN 112
Query: 111 KLDRLGADPYRVINQM 126
K D+ ADP +V ++
Sbjct: 113 KCDKAEADPEKVKKEL 128
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 171 YTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH 230
+ ++ M + S +S E KP ++ N+G H+D GKTTLT I + +
Sbjct: 272 FAAEVAAMSKQSH-MSKEKFERTKP--HV-NVGTIGHVDHGKTTLTAAITTVLAK-TYGG 326
Query: 231 EVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV 290
R D + D+ E+ RGITI ++ + +D PGH D+ +
Sbjct: 327 AARAFDQI----DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQ 382
Query: 291 LDGAILVLCAVGGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 330
+DGAILV+ A G QT + + RQ+ VP I F+NK D
Sbjct: 383 MDGAILVVAATDGPMPQTREHILLGRQV---GVPYIIVFLNKCD 423
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 393
Query: 85 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 113
G QT + + RQ+ VP I F+NK D
Sbjct: 394 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 423
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 87 VQSQTLTVNRQMKRYDVPCIAFI-----NKLDRLGADPYRVINQMRQKTSRWISNESLSE 141
V + TV + +K ++ FI ++++ D + M +++ +S E
Sbjct: 235 VMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS--HMSKEKFER 292
Query: 142 HKPIEYIRNIGISAHIDSGKTTLTERI 168
KP ++ N+G H+D GKTTLT I
Sbjct: 293 TKP--HV-NVGTIGHVDHGKTTLTAAI 316
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 171 YTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH 230
+ ++ M + S +S E KP N+G H+D GKTTLT I + +
Sbjct: 272 FAAEVAAMSKQSH-MSKEKFERTKPHV---NVGTIGHVDHGKTTLTAAITTVLAK-TYGG 326
Query: 231 EVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV 290
R D + D+ E+ RGITI ++ + +D PGH D+ +
Sbjct: 327 AARAFDQI----DNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQ 382
Query: 291 LDGAILVLCAVGGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 330
+DGAILV+ A G QT + + RQ+ VP I F+NK D
Sbjct: 383 MDGAILVVAATDGPMPQTREHILLGRQV---GVPYIIVFLNKCD 423
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 393
Query: 85 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 113
G QT + + RQ+ VP I F+NK D
Sbjct: 394 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 423
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 197 EYIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQR 251
E+IR N+G H+D GKTTLT + + +E V KD +D ER R
Sbjct: 4 EFIRTKRHVNVGTIGHVDHGKTTLTAALTYVAA--AENRNVEVKDY--GDIDKAREERAR 59
Query: 252 GITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-- 308
GITI +A Y K H + +D GH D+ + +DGAILV+ A G QT
Sbjct: 60 GITINTAHVEYETAKRHYSH-VDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTRE 118
Query: 309 -LTVNRQMK-RYDVPCIAFINKLD 330
+ + RQ+ RY + F+NK+D
Sbjct: 119 HILLARQVGVRY---IVVFMNKVD 139
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D ER RGITI +A Y K H + +D GH D+ + +DGAILV+ A
Sbjct: 50 IDKAREERARGITINTAHVEYETAKRHYSH-VDCRGHADYIKNMITGAAQMDGAILVVSA 108
Query: 84 VGGVQSQT---LTVNRQMK-RYDVPCIAFINKLD 113
G QT + + RQ+ RY + F+NK+D
Sbjct: 109 ADGRMRQTREHILLARQVGVRY---IVVFMNKVD 139
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRI-----SEMHEVRGK-----DNVGAVMDSMELERQ 250
N+ + H+D GK+TL R+L G I E E K + ++D ++ ER+
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
RG+TI K + IID PGH DF + D AILV+ A G ++
Sbjct: 68 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 127
Query: 311 VNRQMKRYDV--------PCIAFINKLDRLGADPY 337
V Q + + + I +NK+D L PY
Sbjct: 128 VEGQTREHIILAKTMGLDQLIVAVNKMD-LTEPPY 161
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 102/227 (44%), Gaps = 23/227 (10%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
++D ++ ER+RG+TI K + IID PGH DF + D AILV+ A
Sbjct: 58 LLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSA 117
Query: 84 VGGVQSQTLTVNRQMKRYDV--------PCIAFINKLDRLGADPY--RVINQMRQKTSRW 133
G ++V Q + + + I +NK+D L PY + ++ + S++
Sbjct: 118 KKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD-LTEPPYDEKRYKEIVDQVSKF 176
Query: 134 ISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSE- 192
+ + + +K +R + + A T +E + +Y G E + + + + +
Sbjct: 177 MRSYGFNTNK----VRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKP 232
Query: 193 -HKPIEYIRNI-GIS----AHIDSGKTTLTERILFY-TGRISEMHEV 232
PI+ + +I G+ ++SG + ++I+F G++ E+ +
Sbjct: 233 LRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSI 279
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
Query: 185 ISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDS 244
+S E KP ++ N+G H+D GKTTLT I + + R D + D+
Sbjct: 1 MSKEKFERTKP--HV-NVGTIGHVDHGKTTLTAAITTVLAK-TYGGAARAFDQI----DN 52
Query: 245 MELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV 304
E+ RGITI ++ + +D PGH D+ + +DGAILV+ A G
Sbjct: 53 APEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP 112
Query: 305 QSQT---LTVNRQMKRYDVP-CIAFINKLD 330
QT + + RQ+ VP I F+NK D
Sbjct: 113 MPQTREHILLGRQV---GVPYIIVFLNKCD 139
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Query: 85 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 113
G QT + + RQ+ VP I F+NK D
Sbjct: 110 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 139
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G H+D GKTTLT I + + R D + D+ E+ RGITI ++
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAK-TYGGAARAFDQI----DNAPEEKARGITINTSHV 67
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMKR 317
+ +D PGH D+ + +DGAILV+ A G QT + + RQ+
Sbjct: 68 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-- 125
Query: 318 YDVP-CIAFINKLD 330
VP I F+NK D
Sbjct: 126 -GVPYIIVFLNKCD 138
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 85 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 113
G QT + + RQ+ VP I F+NK D
Sbjct: 109 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 138
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G H+D GKTTLT I + + R D + D+ E+ RGITI ++
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAK-TYGGAARAFDQI----DNAPEEKARGITINTSHV 67
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMKR 317
+ +D PGH D+ + +DGAILV+ A G QT + + RQ+
Sbjct: 68 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-- 125
Query: 318 YDVP-CIAFINKLD 330
VP I F+NK D
Sbjct: 126 -GVPYIIVFLNKCD 138
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 85 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 113
G QT + + RQ+ VP I F+NK D
Sbjct: 109 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 138
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--------EVRGKDNV--GAVMDSMELERQ 250
N+ + H+D GK+TL +L+ G I E + RGK++ ++D M+ ER+
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
RGITI K + IID PGH DF + D AILV+ A G
Sbjct: 68 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKG 120
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 12 QEQVRGKDNV--GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVER 69
Q + RGK++ ++D M+ ER+RGITI K + IID PGH DF +
Sbjct: 44 QAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMIT 103
Query: 70 ALRVLDGAILVLCAVGG 86
D AILV+ A G
Sbjct: 104 GASQADAAILVVSARKG 120
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G H+D GKTTLT I + + R D + D+ E+ RGITI ++
Sbjct: 5 NVGTIGHVDHGKTTLTAAITTVLAK-TYGGAARAFDQI----DNAPEEKARGITINTSHV 59
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMKR 317
+ +D PGH D+ + +DGAILV+ A G QT + + RQ+
Sbjct: 60 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-- 117
Query: 318 YDVP-CIAFINKLD 330
VP I F+NK D
Sbjct: 118 -GVPYIIVFLNKCD 130
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 41 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 100
Query: 85 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 113
G QT + + RQ+ VP I F+NK D
Sbjct: 101 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 130
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G H+D GKTTLT I + + R D + D+ E+ RGITI ++
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAK-TYGGAARAFDQI----DNAPEEKARGITINTSHV 67
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMKR 317
+ +D PGH D+ + +DGAILV+ A G QT + + RQ+
Sbjct: 68 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-- 125
Query: 318 YDVP-CIAFINKLD 330
VP I F+NK D
Sbjct: 126 -GVPYIIVFLNKCD 138
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 85 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 113
G QT + + RQ+ VP I F+NK D
Sbjct: 109 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 138
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G H+D GKTTLT I + + R D + D+ E+ RGITI ++
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAK-TYGGAARAFDQI----DNAPEEKARGITINTSHV 68
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMKR 317
+ +D PGH D+ + +DGAILV+ A G QT + + RQ+
Sbjct: 69 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-- 126
Query: 318 YDVP-CIAFINKLD 330
VP I F+NK D
Sbjct: 127 -GVPYIIVFLNKCD 139
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Query: 85 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 113
G QT + + RQ+ VP I F+NK D
Sbjct: 110 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 139
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--------EVRGKDNV--GAVMDSMELERQ 250
N+ + H+D GK+TL +L+ G I E + RGK++ ++D M+ ER+
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
RGITI K + IID PGH DF + D AILV+ A G
Sbjct: 71 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKG 123
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 12 QEQVRGKDNV--GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVER 69
Q + RGK++ ++D M+ ER+RGITI K + IID PGH DF +
Sbjct: 47 QAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMIT 106
Query: 70 ALRVLDGAILVLCAVGG 86
D AILV+ A G
Sbjct: 107 GASQADAAILVVSARKG 123
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
N+G H+D GKTTLT I T ++E + K +D+ ER RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAAI---TKILAEGGGAKFKKY--EEIDNAPEERARGITINAAHV 59
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMK 316
Y+ H + D PGH D+ + LDG ILV+ A G QT L + RQ+
Sbjct: 60 EYSTAARHYAHT-DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG 118
Query: 317 RYDVPCIAFINKLD 330
V + ++NK D
Sbjct: 119 VEHV--VVYVNKAD 130
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D+ ER RGITI +A Y+ H + D PGH D+ + LDG ILV+ A
Sbjct: 41 IDNAPEERARGITINAAHVEYSTAARHYAHT-DCPGHADYVKNMITGTAPLDGCILVVAA 99
Query: 84 VGGVQSQT---LTVNRQMKRYDVPCIAFINKLD 113
G QT L + RQ+ V + ++NK D
Sbjct: 100 NDGPMPQTREHLLLARQIGVEHV--VVYVNKAD 130
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 198 YIR-----NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRG 252
Y+R N+G H+D GKTTLT I T ++E + K +D+ ER RG
Sbjct: 8 YVRDKPHVNVGTIGHVDHGKTTLTAAI---TKILAEGGGAKFKKY--EEIDNAPEERARG 62
Query: 253 ITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--- 308
ITI +A Y+ H + D PGH D+ LDG ILV+ A G QT
Sbjct: 63 ITINAAHVEYSTAARHYAHT-DCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREH 121
Query: 309 LTVNRQMKRYDVPCIAFINKLD 330
L + RQ+ V + ++NK D
Sbjct: 122 LLLARQIGVEHV--VVYVNKAD 141
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 25 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
+D+ ER RGITI +A Y+ H + D PGH D+ LDG ILV+ A
Sbjct: 52 IDNAPEERARGITINAAHVEYSTAARHYAHT-DCPGHADYVKNXITGTAPLDGCILVVAA 110
Query: 84 VGGVQSQT---LTVNRQMKRYDVPCIAFINKLD 113
G QT L + RQ+ V + ++NK D
Sbjct: 111 NDGPXPQTREHLLLARQIGVEHV--VVYVNKAD 141
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 190 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH-EVRGKD-----------N 237
L +H+ E +R + ++D GK+TL R+L + I E H E +D +
Sbjct: 16 LGQHERKEXLRFL-TCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVD 74
Query: 238 VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 297
+ ++D ++ ER++GITI A Y I DTPGH +T D AI++
Sbjct: 75 LALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIIL 134
Query: 298 LCAVGGVQSQT 308
+ A GVQ+QT
Sbjct: 135 VDARYGVQTQT 145
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 9/193 (4%)
Query: 11 KQEQVRGKD-NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVER 69
K+ G D ++ ++D ++ ER++GITI A Y I DTPGH +T
Sbjct: 64 KKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXAT 123
Query: 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF-INKLDRLGADPYRVINQMRQ 128
D AI+++ A GVQ+QT + + I INK D G D RV ++
Sbjct: 124 GASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKXDLNGFDE-RVFESIKA 182
Query: 129 KTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-ISEMHETSRWISN 187
++ + KP + SA +ER +Y G+ + E+ ET S+
Sbjct: 183 DYLKFAEGIAF---KPTTXAF-VPXSALKGDNVVNKSERSPWYAGQSLXEILETVEIASD 238
Query: 188 ESLSEHK-PIEYI 199
+ ++ + P++Y+
Sbjct: 239 RNYTDLRFPVQYV 251
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 191 SEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRIS-----EMHEVRGKDNVGA----- 240
S KP+ ++ ++ H+DSGK+T+ RI+F G I+ ++H G+
Sbjct: 172 SNPKPVVHLV---VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAW 228
Query: 241 VMDSMELERQRGITIQSAATYTLWKDHNI-NIIDTPGHVDFTVEVERALRVLDGAILVL 298
++D+ E ER RG+T+ A+T T D I I D PGH DF + D A+LV+
Sbjct: 229 LLDTTEEERARGVTMDVAST-TFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVV 286
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 16 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNI-NIIDTPGHVDFTVEVERALRVL 74
+G + ++D+ E ER RG+T+ A+T T D I I D PGH DF +
Sbjct: 221 KGSFSYAWLLDTTEEERARGVTMDVAST-TFESDKKIYEIGDAPGHRDFISGMIAGASSA 279
Query: 75 DGAILVL 81
D A+LV+
Sbjct: 280 DFAVLVV 286
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 27/184 (14%)
Query: 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATY 261
+ I H+D GKT+L E I E GIT A +
Sbjct: 7 VTIMGHVDHGKTSLLEYIRSTKVASGEAG---------------------GITQHIGAYH 45
Query: 262 TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 321
++ I +DTPGH FT R + D +LV+ A GV QT+ + K VP
Sbjct: 46 VETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP 105
Query: 322 CIAFINKLDRLGADPYRVINQMRQ------KVGHNAAFLQIPIGLGSETKGIIDLIQRKA 375
+ +NK+D+ ADP RV N++ Q + G + F+ + G+ ++D I +A
Sbjct: 106 VVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQA 165
Query: 376 IYFE 379
E
Sbjct: 166 EVLE 169
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%)
Query: 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 94
GIT A + ++ I +DTPGH FT R + D +LV+ A GV QT+
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA 95
Query: 95 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128
+ K VP + +NK+D+ ADP RV N++ Q
Sbjct: 96 IQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQ 129
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 206 AHIDSGKTTLTERILFYTGRISEMH--------EVRGKDNV--GAVMDSMELERQRGITI 255
H+D+GK+TL R+L+ +++ E GK + +MD ER+RG+T+
Sbjct: 174 GHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTV 233
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL-CAVGGVQS 306
++ N I+D PGH DF + D AIL + C+ +S
Sbjct: 234 SICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 285
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL-C 82
+MD ER+RG+T+ ++ N I+D PGH DF + D AIL + C
Sbjct: 219 IMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDC 278
Query: 83 AVGGVQS 89
+ +S
Sbjct: 279 STNAFES 285
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 206 AHIDSGKTTLTERILFYTGRISEMH--------EVRGKDNV--GAVMDSMELERQRGITI 255
H+D+GK+TL R+L+ +++ E GK + +MD ER+RG+T+
Sbjct: 40 GHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTV 99
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL-CAVGGVQS 306
++ N I+D PGH DF + D AIL + C+ +S
Sbjct: 100 SICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 151
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL-C 82
+MD ER+RG+T+ ++ N I+D PGH DF + D AIL + C
Sbjct: 85 IMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDC 144
Query: 83 AVGGVQS 89
+ +S
Sbjct: 145 STNAFES 151
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 58/134 (43%), Gaps = 26/134 (19%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G H+D GKTTLT I V K GA RGITI ++
Sbjct: 13 NVGTIGHVDHGKTTLTAAIT----------TVLAKTYGGAA---------RGITINTSHV 53
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT---LTVNRQMKR 317
+ +D PGH D+ + +DGAILV+ A G QT + + RQ+
Sbjct: 54 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-- 111
Query: 318 YDVP-CIAFINKLD 330
VP I F+NK D
Sbjct: 112 -GVPYIIVFLNKCD 124
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 34 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-- 91
RGITI ++ + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 44 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 103
Query: 92 -LTVNRQMKRYDVP-CIAFINKLD 113
+ + RQ+ VP I F+NK D
Sbjct: 104 HILLGRQV---GVPYIIVFLNKCD 124
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 206 AHIDSGKTTLTERILFYTGRISEMH--------EVRGKDNV--GAVMDSMELERQRGITI 255
H+D+GK+TL R+L+ +++ E GK + + D ER+RG+T+
Sbjct: 40 GHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGVTV 99
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL-CAVGGVQS 306
++ N I+D PGH DF + D AIL + C+ +S
Sbjct: 100 SICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFES 151
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL-C 82
+ D ER+RG+T+ ++ N I+D PGH DF + D AIL + C
Sbjct: 85 IXDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDC 144
Query: 83 AVGGVQS 89
+ +S
Sbjct: 145 STNAFES 151
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 201 NIGISAHIDSGKTTLTERILFYTG----RISEMHEVRGKDN------VGAVMDSMELERQ 250
N+ H+D+GK+T+ +I++ TG R E +E K+ + +D+ + ER
Sbjct: 19 NVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 78
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
+G T++ Y + + I+D PGH F + D A+LV+ A G
Sbjct: 79 KGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+D+ + ER +G T++ Y + + I+D PGH F + D A+LV+ A
Sbjct: 70 LDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISAR 129
Query: 85 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSE--H 142
G Q + + + +A + L +IN+M T W SNE E
Sbjct: 130 KGEFETGFEKGGQTREHAM--LAKTAGVKHL----IVLINKMDDPTVNW-SNERYEECKE 182
Query: 143 KPIEYIRNIGISAHID 158
K + +++ +G + D
Sbjct: 183 KLVPFLKKVGFNPKKD 198
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR------GKDN--VGAVMDSMELERQ 250
NI H+D+GK+TL ILF TG + + M ++ GK++ + +DS ER+
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 303
+G T++ Y + +++D PGH + + D +LV+ A G
Sbjct: 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84
+DS ER++G T++ Y + +++D PGH + + D +LV+ A
Sbjct: 96 LDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR 155
Query: 85 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRW 133
G Q + + V +A ++ L VIN+M + + +W
Sbjct: 156 RGEFEAGFERGGQTREHAV--LARTQGINHLVV----VINKMDEPSVQW 198
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAV---MDSMELERQRGITIQS 257
+ + H+D GKTTL + I G E G ++GA MD +E GI
Sbjct: 8 VSVLGHVDHGKTTLLDHI---RGSAVASREAGGITQHIGATEIPMDVIE-----GICGDF 59
Query: 258 AATYTLWKD-HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 316
+++ + + IDTPGH FT +R + D AIL++ G + QT ++
Sbjct: 60 LKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILR 119
Query: 317 RYDVPCIAFINKLDRL 332
Y P + NK+DR+
Sbjct: 120 MYRTPFVVAANKIDRI 135
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 55 IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 114
IDTPGH FT +R + D AIL++ G + QT ++ Y P + NK+DR
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDR 134
Query: 115 L 115
+
Sbjct: 135 I 135
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVRGKDNVGAVMDSMELERQRGITIQSA 258
NIG+ H+D GKTTLT+ + TG ++ H E+R + E+ R S
Sbjct: 13 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSEELRRGITIKIGFADAEIRRCSNCGRYST 69
Query: 259 ATYTLWKDH------NINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
+ + H ++ ID+PGH + ++DGAILV+ A
Sbjct: 70 SPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAA 117
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVRGKDNVGAVMDSMELERQRGITIQSA 258
NIG+ H+D GKTTLT+ + TG ++ H E+R + E+ R S
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYST 68
Query: 259 ATYTLWKDH------NINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
+ + H ++ ID PGH + ++DGAILV+ A
Sbjct: 69 SPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAA 116
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVRGKDNVGAVMDSMELERQRGITIQSA 258
NIG+ H+D GKTTLT+ + TG ++ H E+R + E+ R S
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYST 68
Query: 259 ATYTLWKDH------NINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
+ + H ++ ID PGH + ++DGAILV+ A
Sbjct: 69 SPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAA 116
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSAAT 260
+ + H+D GKTTL + I G E G ++GA + + GI
Sbjct: 8 VSVLGHVDHGKTTLLDHI---RGSAVASREAGGITQHIGAT--EIPXDVIEGICGDFLKK 62
Query: 261 YTLWKD-HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD 319
+++ + + IDTPGH FT +R + D AIL++ G + QT ++ Y
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYR 122
Query: 320 VPCIAFINKLDRL 332
P + NK+DR+
Sbjct: 123 TPFVVAANKIDRI 135
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 55 IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 114
IDTPGH FT +R + D AIL++ G + QT ++ Y P + NK+DR
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPFVVAANKIDR 134
Query: 115 L 115
+
Sbjct: 135 I 135
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVRGKDNVGAVMDSMELERQRGITIQSA 258
NIG H+D GKTTLT+ + TG ++ H E+R + E+ R S
Sbjct: 12 NIGXVGHVDHGKTTLTKAL---TGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYST 68
Query: 259 ATYTLWKDH------NINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
+ + H ++ ID PGH + DGAILV+ A
Sbjct: 69 SPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAA 116
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--- 91
GITI ++ + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 92 LTVNRQMKRYDVP-CIAFINKLD 113
+ + RQ+ VP I F+NK D
Sbjct: 61 ILLGRQV---GVPYIIVFLNKCD 80
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 252 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--- 308
GITI ++ + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 309 LTVNRQMKRYDVP-CIAFINKLD 330
+ + RQ+ VP I F+NK D
Sbjct: 61 ILLGRQV---GVPYIIVFLNKCD 80
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--- 91
GITI ++ + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 92 LTVNRQMKRYDVP-CIAFINKLD 113
+ + RQ+ VP I F+NK D
Sbjct: 61 ILLGRQV---GVPYIIVFLNKCD 80
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 252 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--- 308
GITI ++ + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 309 LTVNRQMKRYDVP-CIAFINKLD 330
+ + RQ+ VP I F+NK D
Sbjct: 61 ILLGRQV---GVPYIIVFLNKCD 80
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
NIG+ H+D GKT+LT+ + TG ++ H + + + + E ++ T
Sbjct: 10 NIGMVGHVDHGKTSLTKAL---TGVWTDRHSEELRRGISIRLGYADCEIRK---CPQCGT 63
Query: 261 YTLWKD-----------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
YT ++ +D+PGH + ++DGAILV+ A
Sbjct: 64 YTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAA 114
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 201 NIGISAHIDSGKTTLTERIL-FYTGRISEMHEVRG--KDNVGAVMDSMELERQRGITIQS 257
NIG+ H+D GKTTL + I +T + SE G + N+G + E +
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEAY----VTE 65
Query: 258 AATYTLWKD------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
+ + D I+ ID PGH + ++DGAILV+ A
Sbjct: 66 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAA 114
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
NIG+ H+D GKTTL + I TG + + N+G + E + +
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCESCKKPEAY----VTEPSC 62
Query: 261 YTLWKD------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
+ D I+ ID PGH + ++DGAILV+ A
Sbjct: 63 KSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAA 108
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 201 NIGISAHIDSGKTTLTERIL-FYTGRISEMHEVRG--------KDNVGAVMDSMELERQR 251
NIG+ H+D GKTTL + I +T + SE + RG + N+G + E
Sbjct: 11 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELK-RGMTIKLGYAETNIGVCESCKKPEAY- 68
Query: 252 GITIQSAATYTLWKD------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
+ + + D I+ ID PGH + ++DGAILV+ A
Sbjct: 69 ---VTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAA 120
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 201 NIGISAHIDSGKTTLTERIL-FYTGRISEMHEVRG--------KDNVGAVMDSMELERQR 251
NIG+ H+D GKTTL + I +T + SE + RG + N+G + E
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELK-RGMTIKLGYAETNIGVCESCKKPEAY- 67
Query: 252 GITIQSAATYTLWKD------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
+ + + D I+ ID PGH + ++DGAILV+ A
Sbjct: 68 ---VTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAA 119
>pdb|2NTZ|A Chain A, Structure Of A Parb-Dna Complex Reveals A Double B-Box
Interaction
pdb|2NTZ|B Chain B, Structure Of A Parb-Dna Complex Reveals A Double B-Box
Interaction
Length = 192
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
I+S+E E + +L L+TK +L ++G D + D FA R +
Sbjct: 100 ILSIEEXAEDEVKNKILRLITKEASLL-TDKGSKDKSVVTELWKFEDKDRFA---RKRVK 155
Query: 999 GKGEFSMDYSRYSPALPEVQDRLV 1022
G+ FS +++R S L E DR +
Sbjct: 156 GRA-FSYEFNRLSKELQEELDRXI 178
>pdb|3TL8|B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|F Chain F, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|K Chain K, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|L Chain L, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 117
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 380 GPLGDNLRIEEIPADLKKEAESKRQELIEHVA-------EGDEILGEMFLEEKSISEDDI 432
GPLG + R + P D ++R ++ A E D L L ++ ++ + +
Sbjct: 1 GPLGSD-RASQTPVDRSPPRVNQRPIRVDRAAMRNRGNDEADAALRG--LVQQGVNLEHL 57
Query: 433 KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLD 464
+ A+ R + R P+ +G+AL+N G+ +D
Sbjct: 58 RTALERHVMQRLPIPLDIGSALQNVGINPSID 89
>pdb|4HPP|A Chain A, Crystal Structure Of Novel Glutamine Synthase Homolog
Length = 443
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 246 ELERQRGITIQSAATYTLWKDHNINIIDTPGH---VDFTVEVERALRVLDGAILVLCAVG 302
E+ER R +Q A + +H +++ PG F+++ +RA G ++ A
Sbjct: 115 EVERYRDSGLQVIAAF----EHEFSLLGLPGERPAAAFSLQAQRAAGQFPGWLVSALAQA 170
Query: 303 GVQSQTLTVNRQMKRYDVPCIAF--INKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGL 360
G + + ++Y+V C + DR + V ++ +++G F +P
Sbjct: 171 GTEPEMFLPEYGQRQYEVTCRPAQGVAAADR-AVNVREVTREVARQMGLRTCFAPLP-AP 228
Query: 361 GSETKGI 367
G+ T G+
Sbjct: 229 GAVTNGV 235
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 271 IIDTPGHVDFTV----EVER----ALRVLDGAILVL------CAVGGVQSQTLTVNRQMK 316
IIDTPG +D + E+E+ ALR L I+ + C + L +
Sbjct: 218 IIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGE 277
Query: 317 RYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAI 376
D+P + INK+D + + + + ++ G N PI + + IDL++ + I
Sbjct: 278 FKDLPFLVVINKIDVADEENIKRLEKFVKEKGLN------PIKISALKGTGIDLVKEEII 331
Query: 377 YFEGPLGDNLRIEEIPADLKK 397
PL + + E+I +L++
Sbjct: 332 KTLRPLAEKVAREKIERELRR 352
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILE- 937
F Q E +S V GDN +D EI +A G +KQ G+ +L+
Sbjct: 95 AFPQTWEDPNVSHPETKAV------GDNEPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 938 -----PIMSVEISTPIEFQGSVLNLVTKRH-GILQGNEGKDDWVTIYAEIP---LNDMFG 988
+++++I+ P+ + + + V K G+L+ ++W IY +IP + F
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT---NEWFRIY-KIPDGKPENQFA 204
Query: 989 FAGDLRS 995
F+G+ ++
Sbjct: 205 FSGEAKN 211
>pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio
Parahaemolyticus Rimd 2210633
Length = 332
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 642 VSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKE---TLVQPFD---FDYLHKKQSGGS 695
VSG GELHL I + RE + + +P+V E L +PF+ D + Q G
Sbjct: 85 VSGRGELHLSILIENXRRE-GFELAVSRPEVIIXEEDGQLXEPFETVTIDVXEEHQGGIX 143
Query: 696 GQYGRVIGTLEPLPPSANTKL--EFIDETVG 724
G G L P ++ +FI + G
Sbjct: 144 ENIGLRXGELXDXAPDGKGRVRXDFIXPSRG 174
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILE- 937
F Q E +S V GDN +D EI +A G +KQ G+ +L+
Sbjct: 95 AFPQTWEDPNVSHPETKAV------GDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 938 -----PIMSVEISTPIEFQGSVLNLVTKRH-GILQGNEGKDDWVTIYAEIP---LNDMFG 988
+++++I+ P+ + + + V K G+L+ ++W IY +IP + F
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT---NEWFRIY-KIPDGKPENQFA 204
Query: 989 FAGDLRS 995
F+G+ ++
Sbjct: 205 FSGEAKN 211
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILE- 937
F Q E +S V GDN +D EI +A G +KQ G+ +L+
Sbjct: 95 AFPQTWEDPNVSHPETKAV------GDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 938 -----PIMSVEISTPIEFQGSVLNLVTKRH-GILQGNEGKDDWVTIYAEIP---LNDMFG 988
+++++I+ P+ + + + V K G+L+ ++W IY +IP + F
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT---NEWFRIY-KIPDGKPENQFA 204
Query: 989 FAGDLRS 995
F+G+ ++
Sbjct: 205 FSGEAKN 211
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILE- 937
F Q E +S V GDN +D EI +A G +KQ G+ +L+
Sbjct: 95 AFPQTWEDPNVSHPETKAV------GDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 938 -----PIMSVEISTPIEFQGSVLNLVTKRH-GILQGNEGKDDWVTIYAEIP---LNDMFG 988
+++++I+ P+ + + + V K G+L+ ++W IY +IP + F
Sbjct: 149 GETEWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT---NEWFRIY-KIPDGKPENQFA 204
Query: 989 FAGDLRS 995
F+G+ ++
Sbjct: 205 FSGEAKN 211
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILE- 937
F Q E +S V GDN +D EI +A G +KQ G+ +L+
Sbjct: 96 AFPQTWEDPNVSHPETKAV------GDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 149
Query: 938 -----PIMSVEISTPIEFQGSVLNLVTKRH-GILQGNEGKDDWVTIYAEIP---LNDMFG 988
+++++I+ P+ + + + V K G+L+ ++W IY +IP + F
Sbjct: 150 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT---NEWFRIY-KIPDGKPENQFA 205
Query: 989 FAGDLRS 995
F+G+ ++
Sbjct: 206 FSGEAKN 212
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILE- 937
F Q E +S V GDN +D EI +A G +KQ G+ +L+
Sbjct: 95 AFPQTWEDPNVSHPETKAV------GDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 938 -----PIMSVEISTPIEFQGSVLNLVTKRH-GILQGNEGKDDWVTIYAEIP---LNDMFG 988
+++++I+ P+ + + + V K G+L+ ++W IY +IP + F
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT---NEWFRIY-KIPDGKPENQFA 204
Query: 989 FAGDLRS 995
F+G+ ++
Sbjct: 205 FSGEAKN 211
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILE- 937
F Q E +S V GDN +D EI +A G +KQ G+ +L+
Sbjct: 95 AFPQTWEDPNVSHPETKAV------GDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 938 -----PIMSVEISTPIEFQGSVLNLVTKRH-GILQGNEGKDDWVTIYAEIP---LNDMFG 988
+++++I+ P+ + + + V K G+L+ ++W IY +IP + F
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT---NEWFRIY-KIPDGKPENQFA 204
Query: 989 FAGDLRS 995
F+G+ ++
Sbjct: 205 FSGEAKN 211
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILE- 937
F Q E +S V GDN +D EI +A G +KQ G+ +L+
Sbjct: 95 AFPQTWEDPNVSHPETKAV------GDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 938 -----PIMSVEISTPIEFQGSVLNLVTKRH-GILQGNEGKDDWVTIYAEIP---LNDMFG 988
+++++I+ P+ + + + V K G+L+ ++W IY +IP + F
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT---NEWFRIY-KIPDGKPENQFA 204
Query: 989 FAGDLRS 995
F+G+ ++
Sbjct: 205 FSGEAKN 211
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 20/127 (15%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILE- 937
F Q E +S V GDN +D EI +A G +KQ G+ +L+
Sbjct: 96 AFPQTWEDPNVSHPETKAV------GDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 149
Query: 938 -----PIMSVEISTPIEFQGSVLNLVTKRH-GILQGNEGKDDWVTIYAEIP---LNDMFG 988
+++++I+ P+ + + + V K G+L+ ++W IY +IP + F
Sbjct: 150 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT---NEWFRIY-KIPDGKPENQFA 205
Query: 989 FAGDLRS 995
F+G+ ++
Sbjct: 206 FSGEAKN 212
>pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I Region
Fitted Into The Cryo-Em Map Of The Eef2.80s.Alf4.Gdp
Complex
Length = 46
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 208 IDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQS 257
+D GKTTLT + F T + EV+ ++ D ER RGITI +
Sbjct: 1 VDHGKTTLTAALTFVTAAENPNVEVKDYGDI----DKAPEERARGITINT 46
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 681 PFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK-PFLPA 734
P +F Y H S +Y GTL P+ + K+E ID T G N P P +PA
Sbjct: 208 PREFGYSHS-----SPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDIPA 257
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 681 PFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK-PFLPA 734
P +F Y H S +Y GTL P+ + K+E ID T G N P P +PA
Sbjct: 208 PREFGYSHS-----SPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDIPA 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,967,251
Number of Sequences: 62578
Number of extensions: 1345979
Number of successful extensions: 4283
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3813
Number of HSP's gapped (non-prelim): 369
length of query: 1043
length of database: 14,973,337
effective HSP length: 109
effective length of query: 934
effective length of database: 8,152,335
effective search space: 7614280890
effective search space used: 7614280890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)