Query psy11896
Match_columns 1043
No_of_seqs 567 out of 4780
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:42:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465|consensus 100.0 6E-144 1E-148 1193.4 55.7 687 193-1024 33-720 (721)
2 COG0480 FusA Translation elong 100.0 4E-134 1E-138 1196.8 75.1 686 196-1031 7-697 (697)
3 PRK00007 elongation factor G; 100.0 5E-121 1E-125 1118.7 78.5 683 194-1025 5-691 (693)
4 PRK12739 elongation factor G; 100.0 2E-120 4E-125 1114.8 77.3 682 195-1025 4-688 (691)
5 TIGR00484 EF-G translation elo 100.0 6E-120 1E-124 1111.4 79.1 682 194-1025 5-688 (689)
6 PRK13351 elongation factor G; 100.0 3E-116 7E-121 1082.6 79.7 679 195-1023 4-686 (687)
7 PRK12740 elongation factor G; 100.0 6E-110 1E-114 1026.0 76.2 665 205-1022 1-667 (668)
8 PTZ00416 elongation factor 2; 100.0 3E-111 7E-116 1045.0 62.0 716 195-1034 15-825 (836)
9 PLN00116 translation elongatio 100.0 3E-110 6E-115 1039.3 61.4 712 194-1034 14-832 (843)
10 TIGR00490 aEF-2 translation el 100.0 9E-107 2E-111 995.4 59.8 640 195-1033 15-719 (720)
11 PRK07560 elongation factor EF- 100.0 5E-106 1E-110 991.9 54.9 648 194-1033 15-721 (731)
12 KOG0469|consensus 100.0 4E-106 1E-110 866.3 29.4 716 191-1034 11-831 (842)
13 KOG0464|consensus 100.0 3E-102 7E-107 819.8 32.6 672 194-1024 32-748 (753)
14 KOG0468|consensus 100.0 2.7E-93 5.8E-98 790.0 43.0 725 192-1034 121-945 (971)
15 KOG0467|consensus 100.0 1E-90 2.3E-95 785.6 36.7 750 193-1043 3-887 (887)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 1.1E-75 2.5E-80 697.8 48.6 453 199-1020 1-478 (594)
17 PRK10218 GTP-binding protein; 100.0 4.7E-74 1E-78 681.8 50.0 453 197-1018 3-481 (607)
18 PRK05433 GTP-binding protein L 100.0 7.4E-74 1.6E-78 685.3 51.3 461 194-1013 2-481 (600)
19 PRK00741 prfC peptide chain re 100.0 2.3E-73 5E-78 670.0 48.5 450 195-679 6-472 (526)
20 TIGR01393 lepA GTP-binding pro 100.0 4.5E-73 9.9E-78 677.9 51.7 456 198-1012 2-477 (595)
21 TIGR00503 prfC peptide chain r 100.0 1.7E-70 3.6E-75 645.9 47.8 448 195-676 7-470 (527)
22 KOG0462|consensus 100.0 1.5E-64 3.2E-69 556.3 37.4 365 193-679 54-432 (650)
23 COG0481 LepA Membrane GTPase L 100.0 8E-63 1.7E-67 533.6 39.2 364 193-680 3-383 (603)
24 COG1217 TypA Predicted membran 100.0 3.2E-62 7E-67 527.2 39.9 454 197-1019 3-481 (603)
25 COG4108 PrfC Peptide chain rel 100.0 6.5E-61 1.4E-65 515.4 29.6 448 196-673 9-468 (528)
26 cd01886 EF-G Elongation factor 100.0 2.2E-47 4.8E-52 415.7 31.1 270 201-473 1-270 (270)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 4.1E-43 8.8E-48 382.0 28.7 265 198-473 1-267 (267)
28 cd04170 EF-G_bact Elongation f 100.0 3.6E-41 7.9E-46 370.4 30.4 268 201-473 1-268 (268)
29 cd04168 TetM_like Tet(M)-like 100.0 1.4E-40 3E-45 356.4 26.4 237 201-473 1-237 (237)
30 COG1160 Predicted GTPases [Gen 100.0 5.4E-38 1.2E-42 347.4 27.1 279 4-334 5-304 (444)
31 PRK00093 GTP-binding protein D 100.0 2.6E-33 5.7E-38 330.3 32.1 276 3-332 2-297 (435)
32 TIGR03594 GTPase_EngA ribosome 100.0 1.6E-33 3.4E-38 331.9 29.4 276 4-332 1-296 (429)
33 PRK03003 GTP-binding protein D 100.0 1.5E-33 3.3E-38 333.0 29.3 279 2-333 38-336 (472)
34 PRK12736 elongation factor Tu; 100.0 5.1E-32 1.1E-36 312.5 29.8 268 197-581 10-294 (394)
35 CHL00071 tufA elongation facto 100.0 5.2E-32 1.1E-36 314.0 29.7 269 196-581 9-304 (409)
36 PRK09518 bifunctional cytidyla 100.0 3.4E-32 7.3E-37 336.0 27.5 280 3-333 276-575 (712)
37 PTZ00141 elongation factor 1- 100.0 7.3E-32 1.6E-36 313.9 26.7 270 197-581 5-315 (446)
38 PRK05306 infB translation init 100.0 2.6E-31 5.7E-36 322.6 32.2 303 197-633 288-621 (787)
39 PLN00043 elongation factor 1-a 100.0 1.1E-31 2.3E-36 312.2 25.8 270 197-581 5-315 (447)
40 TIGR00485 EF-Tu translation el 100.0 4.5E-31 9.9E-36 305.2 29.5 268 197-581 10-294 (394)
41 COG5256 TEF1 Translation elong 100.0 4.5E-31 9.7E-36 287.0 26.4 277 198-587 6-318 (428)
42 PRK12735 elongation factor Tu; 100.0 2E-30 4.4E-35 299.4 29.3 268 197-581 10-296 (396)
43 PLN03126 Elongation factor Tu; 100.0 2.8E-30 6E-35 301.1 29.5 265 196-581 78-373 (478)
44 PRK00049 elongation factor Tu; 100.0 3.2E-30 7E-35 297.4 29.3 268 197-581 10-296 (396)
45 PRK12317 elongation factor 1-a 100.0 2.4E-30 5.2E-35 303.0 27.8 270 197-581 4-307 (425)
46 TIGR00487 IF-2 translation ini 100.0 3E-29 6.5E-34 298.9 32.9 301 199-633 87-419 (587)
47 PLN03127 Elongation factor Tu; 100.0 1.9E-29 4.1E-34 293.0 29.7 270 195-581 57-347 (447)
48 TIGR02034 CysN sulfate adenyly 100.0 8.6E-30 1.9E-34 294.8 26.6 267 201-581 2-297 (406)
49 TIGR00483 EF-1_alpha translati 100.0 2.1E-29 4.5E-34 294.9 28.3 274 196-581 4-309 (426)
50 PRK05124 cysN sulfate adenylyl 100.0 2.3E-29 5E-34 295.2 26.8 272 197-581 25-325 (474)
51 PTZ00327 eukaryotic translatio 100.0 1.4E-28 3.1E-33 284.5 25.5 251 197-581 32-348 (460)
52 CHL00189 infB translation init 100.0 2.8E-28 6E-33 293.4 26.0 251 197-581 242-499 (742)
53 COG0050 TufB GTPases - transla 100.0 1.3E-28 2.8E-33 253.1 18.8 268 197-581 10-294 (394)
54 KOG0460|consensus 100.0 1.2E-28 2.6E-33 257.9 16.0 265 198-581 53-338 (449)
55 PRK10512 selenocysteinyl-tRNA- 100.0 2E-27 4.3E-32 285.7 25.9 246 201-581 2-257 (614)
56 PRK04000 translation initiatio 100.0 9.9E-27 2.2E-31 269.2 27.9 250 198-581 8-315 (411)
57 PF00009 GTP_EFTU: Elongation 100.0 3.9E-28 8.4E-33 252.8 14.2 133 198-333 2-136 (188)
58 PRK05506 bifunctional sulfate 100.0 6.4E-27 1.4E-31 286.1 26.8 268 200-581 25-321 (632)
59 TIGR03680 eif2g_arch translati 99.9 4.1E-26 8.8E-31 264.5 27.7 250 198-581 3-310 (406)
60 KOG0469|consensus 99.9 9.5E-28 2.1E-32 260.6 10.4 197 621-830 553-760 (842)
61 PTZ00416 elongation factor 2; 99.9 1.5E-24 3.3E-29 270.6 40.5 134 702-838 627-764 (836)
62 TIGR00475 selB selenocysteine- 99.9 6.7E-26 1.5E-30 272.1 26.6 250 201-581 2-258 (581)
63 KOG0458|consensus 99.9 1.6E-25 3.4E-30 251.8 22.6 279 192-581 170-487 (603)
64 cd01885 EF2 EF2 (for archaea a 99.9 1.6E-25 3.4E-30 236.6 19.9 140 200-344 1-154 (222)
65 COG3276 SelB Selenocysteine-sp 99.9 4.2E-25 9.2E-30 242.4 20.9 245 201-581 2-253 (447)
66 COG0532 InfB Translation initi 99.9 1.3E-23 2.7E-28 237.2 27.0 248 200-581 6-259 (509)
67 cd01683 EF2_IV_snRNP EF-2_doma 99.9 1E-24 2.2E-29 221.1 14.3 102 841-942 73-178 (178)
68 COG2895 CysN GTPases - Sulfate 99.9 3.8E-24 8.3E-29 226.2 18.7 309 198-611 5-331 (431)
69 KOG0465|consensus 99.9 2.8E-23 6E-28 232.9 25.4 207 22-228 76-312 (721)
70 COG5258 GTPBP1 GTPase [General 99.9 2.9E-23 6.2E-28 220.7 23.9 280 199-581 117-434 (527)
71 cd01884 EF_Tu EF-Tu subfamily. 99.9 5E-24 1.1E-28 221.6 17.4 128 200-332 3-131 (195)
72 PRK04004 translation initiatio 99.9 2.2E-23 4.7E-28 249.6 24.8 301 200-581 7-326 (586)
73 KOG1145|consensus 99.9 2.2E-23 4.8E-28 231.0 22.1 250 198-581 152-405 (683)
74 KOG0468|consensus 99.9 1.1E-22 2.3E-27 228.4 24.6 129 699-830 728-862 (971)
75 COG5257 GCD11 Translation init 99.9 8.3E-22 1.8E-26 205.8 24.5 306 197-647 8-362 (415)
76 TIGR00491 aIF-2 translation in 99.9 2.9E-21 6.2E-26 230.1 31.7 284 200-581 5-324 (590)
77 COG0480 FusA Translation elong 99.9 1.1E-21 2.4E-26 235.2 25.5 111 22-132 47-158 (697)
78 cd01883 EF1_alpha Eukaryotic e 99.9 1E-22 2.3E-27 216.9 12.4 134 201-334 1-152 (219)
79 cd01681 aeEF2_snRNP_like_IV Th 99.9 1.6E-22 3.4E-27 207.0 11.9 101 841-941 73-177 (177)
80 cd01890 LepA LepA subfamily. 99.9 2.7E-21 5.9E-26 199.7 20.0 130 200-335 1-135 (179)
81 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 1.5E-22 3.2E-27 178.1 7.8 78 937-1014 1-80 (80)
82 cd04166 CysN_ATPS CysN_ATPS su 99.9 9.9E-22 2.2E-26 207.8 14.9 134 201-334 1-145 (208)
83 PF03764 EFG_IV: Elongation fa 99.9 7.7E-22 1.7E-26 189.2 12.5 119 670-791 1-120 (120)
84 PRK00007 elongation factor G; 99.9 7.4E-20 1.6E-24 225.6 33.2 127 4-131 12-156 (693)
85 KOG0467|consensus 99.9 3.9E-23 8.5E-28 236.6 3.3 670 22-831 44-785 (887)
86 cd01891 TypA_BipA TypA (tyrosi 99.9 5.3E-21 1.1E-25 200.3 18.9 143 198-345 1-143 (194)
87 KOG0461|consensus 99.9 2.2E-21 4.8E-26 203.3 15.7 246 200-570 8-268 (522)
88 cd04167 Snu114p Snu114p subfam 99.9 5.7E-21 1.2E-25 202.9 18.6 131 200-332 1-136 (213)
89 KOG0459|consensus 99.9 5E-21 1.1E-25 205.5 15.2 292 195-587 75-392 (501)
90 COG5256 TEF1 Translation elong 99.8 1.5E-21 3.3E-26 212.9 10.2 200 10-214 45-259 (428)
91 TIGR00484 EF-G translation elo 99.8 3.1E-19 6.7E-24 220.5 31.2 126 5-131 13-156 (689)
92 cd01684 Tet_like_IV EF-G_domai 99.8 9.2E-21 2E-25 179.1 13.5 114 672-790 1-114 (115)
93 cd01888 eIF2_gamma eIF2-gamma 99.8 8.2E-21 1.8E-25 200.0 14.2 116 200-333 1-151 (203)
94 PRK12739 elongation factor G; 99.8 8.8E-19 1.9E-23 216.3 34.4 126 5-131 11-154 (691)
95 cd01889 SelB_euk SelB subfamil 99.8 4.5E-20 9.7E-25 192.9 15.5 119 201-333 2-134 (192)
96 smart00838 EFG_C Elongation fa 99.8 5.6E-21 1.2E-25 170.9 7.3 84 935-1018 1-84 (85)
97 PF00679 EFG_C: Elongation fac 99.8 1E-20 2.2E-25 170.6 8.8 88 934-1021 1-89 (89)
98 PRK13351 elongation factor G; 99.8 8.5E-18 1.8E-22 208.4 34.0 130 3-133 9-156 (687)
99 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.6E-19 3.5E-24 191.9 16.1 140 201-348 1-168 (224)
100 PRK14845 translation initiatio 99.8 3.1E-18 6.7E-23 212.8 29.8 273 211-581 473-781 (1049)
101 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.8 1.7E-19 3.7E-24 171.5 12.2 115 674-790 1-115 (116)
102 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 4.8E-20 1E-24 161.9 7.7 78 937-1014 1-78 (78)
103 cd03711 Tet_C Tet_C: C-terminu 99.8 7.7E-20 1.7E-24 160.5 7.3 78 937-1014 1-78 (78)
104 cd00881 GTP_translation_factor 99.8 2.4E-18 5.3E-23 178.9 19.5 143 201-348 1-144 (189)
105 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 1.3E-19 2.8E-24 159.4 7.3 78 937-1014 1-78 (78)
106 cd01693 mtEFG2_like_IV mtEF-G2 99.8 1E-18 2.3E-23 167.3 12.1 117 672-790 1-119 (120)
107 cd01680 EFG_like_IV Elongation 99.8 1.1E-18 2.3E-23 166.6 12.0 115 674-790 1-115 (116)
108 cd04096 eEF2_snRNP_like_C eEF2 99.8 3.7E-19 8E-24 157.2 7.7 78 937-1014 1-80 (80)
109 PF14492 EFG_II: Elongation Fa 99.8 5.1E-19 1.1E-23 153.1 7.9 75 595-669 1-75 (75)
110 PRK05306 infB translation init 99.8 1.8E-16 4E-21 193.6 31.3 158 6-171 293-450 (787)
111 cd01514 Elongation_Factor_C El 99.8 7.9E-19 1.7E-23 154.9 7.4 78 937-1014 1-79 (79)
112 TIGR00487 IF-2 translation ini 99.8 1.8E-16 3.9E-21 189.7 29.6 158 4-170 89-247 (587)
113 cd03710 BipA_TypA_C BipA_TypA_ 99.8 1.7E-18 3.6E-23 152.3 8.4 77 937-1013 1-78 (79)
114 CHL00189 infB translation init 99.8 2.4E-16 5.2E-21 190.7 28.6 158 5-171 247-408 (742)
115 PLN00116 translation elongatio 99.7 1.8E-16 3.9E-21 199.0 28.3 137 699-838 631-771 (843)
116 PF00009 GTP_EFTU: Elongation 99.7 3.5E-18 7.6E-23 177.9 10.9 161 7-173 7-187 (188)
117 TIGR00490 aEF-2 translation el 99.7 2.4E-16 5.1E-21 195.2 28.1 127 3-130 20-166 (720)
118 TIGR02034 CysN sulfate adenyly 99.7 8.9E-18 1.9E-22 194.8 14.1 176 18-200 48-226 (406)
119 cd04171 SelB SelB subfamily. 99.7 3.5E-17 7.6E-22 166.0 16.3 115 201-333 2-118 (164)
120 PRK07560 elongation factor EF- 99.7 4.8E-16 1E-20 193.0 28.6 109 9-117 26-154 (731)
121 PRK12317 elongation factor 1-a 99.7 1.1E-17 2.5E-22 196.1 13.5 182 15-201 49-235 (425)
122 PRK12740 elongation factor G; 99.7 2.9E-15 6.3E-20 185.7 35.5 109 23-131 33-141 (668)
123 KOG0462|consensus 99.7 1.4E-17 3.1E-22 185.6 12.9 142 20-174 92-236 (650)
124 KOG0463|consensus 99.7 3.7E-17 7.9E-22 173.3 15.0 281 200-581 134-453 (641)
125 PTZ00141 elongation factor 1- 99.7 1.7E-17 3.7E-22 193.7 13.5 184 13-201 48-243 (446)
126 cd03709 lepA_C lepA_C: This fa 99.7 7.2E-18 1.6E-22 148.4 7.7 77 937-1013 1-79 (80)
127 COG0532 InfB Translation initi 99.7 2.3E-15 5E-20 170.7 29.0 192 6-220 8-203 (509)
128 KOG0458|consensus 99.7 2.6E-17 5.7E-22 186.0 12.8 197 10-211 215-430 (603)
129 PLN00043 elongation factor 1-a 99.7 3.3E-17 7.3E-22 191.1 13.4 185 14-202 49-244 (447)
130 COG1160 Predicted GTPases [Gen 99.7 6.4E-17 1.4E-21 180.4 14.8 113 200-332 4-125 (444)
131 PRK05124 cysN sulfate adenylyl 99.7 4.3E-17 9.3E-22 191.8 13.8 158 18-181 75-234 (474)
132 COG2895 CysN GTPases - Sulfate 99.7 1.5E-17 3.2E-22 176.6 8.6 179 14-199 50-231 (431)
133 cd04166 CysN_ATPS CysN_ATPS su 99.7 4.1E-17 9E-22 172.5 12.1 156 20-182 47-204 (208)
134 KOG1144|consensus 99.7 1.4E-16 3.1E-21 181.5 17.0 257 200-539 476-738 (1064)
135 cd01884 EF_Tu EF-Tu subfamily. 99.7 7.5E-17 1.6E-21 167.8 13.2 152 5-163 5-173 (195)
136 COG1159 Era GTPase [General fu 99.7 1.8E-16 3.9E-21 167.7 15.3 115 199-333 6-128 (298)
137 COG0481 LepA Membrane GTPase L 99.7 4.5E-17 9.7E-22 178.7 10.4 141 20-173 41-186 (603)
138 PRK09554 feoB ferrous iron tra 99.7 9.4E-17 2E-21 197.5 14.3 240 200-470 4-263 (772)
139 cd01890 LepA LepA subfamily. 99.7 2.4E-16 5.3E-21 162.6 15.2 155 5-173 3-177 (179)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 5.4E-16 1.2E-20 158.1 17.4 114 201-335 2-118 (168)
141 cd01889 SelB_euk SelB subfamil 99.7 1.5E-16 3.2E-21 166.4 13.2 163 4-173 2-186 (192)
142 cd01883 EF1_alpha Eukaryotic e 99.7 5.9E-17 1.3E-21 172.7 9.9 155 16-174 43-206 (219)
143 PF02421 FeoB_N: Ferrous iron 99.7 7.5E-17 1.6E-21 159.3 9.1 109 201-332 2-118 (156)
144 COG1159 Era GTPase [General fu 99.7 2.6E-16 5.6E-21 166.5 12.6 170 5-188 9-187 (298)
145 KOG1143|consensus 99.7 1.8E-15 3.9E-20 160.7 18.7 286 200-581 168-488 (591)
146 TIGR00483 EF-1_alpha translati 99.7 2.5E-16 5.5E-21 184.7 13.7 182 15-201 50-237 (426)
147 PRK05433 GTP-binding protein L 99.7 6.7E-16 1.5E-20 186.2 16.3 156 5-174 10-185 (600)
148 cd04171 SelB SelB subfamily. 99.7 4.7E-16 1E-20 157.7 12.7 153 7-169 4-162 (164)
149 TIGR01394 TypA_BipA GTP-bindin 99.7 4.8E-16 1E-20 186.7 14.8 163 5-174 4-192 (594)
150 TIGR01393 lepA GTP-binding pro 99.7 6.9E-16 1.5E-20 185.8 16.2 156 5-174 6-181 (595)
151 cd04168 TetM_like Tet(M)-like 99.7 1.3E-15 2.8E-20 163.6 16.4 164 10-173 6-235 (237)
152 TIGR00475 selB selenocysteine- 99.7 5.6E-16 1.2E-20 186.7 14.6 159 6-174 4-167 (581)
153 PRK15494 era GTPase Era; Provi 99.7 2.2E-15 4.8E-20 170.5 18.3 116 197-332 50-173 (339)
154 TIGR00436 era GTP-binding prot 99.7 2.5E-15 5.4E-20 165.5 17.7 111 201-332 2-120 (270)
155 cd03690 Tet_II Tet_II: This su 99.6 7.9E-16 1.7E-20 137.3 10.6 81 500-581 2-84 (85)
156 cd01891 TypA_BipA TypA (tyrosi 99.6 1.7E-15 3.6E-20 158.7 14.9 154 4-164 4-173 (194)
157 cd01886 EF-G Elongation factor 99.6 2E-15 4.3E-20 165.0 15.3 125 22-158 36-160 (270)
158 PRK15494 era GTPase Era; Provi 99.6 1.9E-15 4E-20 171.1 14.8 167 3-185 53-228 (339)
159 PRK10218 GTP-binding protein; 99.6 1.7E-15 3.8E-20 181.4 15.2 165 3-174 6-196 (607)
160 cd01858 NGP_1 NGP-1. Autoanti 99.6 2.7E-15 6E-20 151.3 14.3 154 67-277 2-157 (157)
161 PRK10512 selenocysteinyl-tRNA- 99.6 2E-15 4.4E-20 182.2 15.4 155 10-174 7-167 (614)
162 cd01894 EngA1 EngA1 subfamily. 99.6 3.9E-15 8.5E-20 149.6 15.1 111 203-333 1-119 (157)
163 PRK05506 bifunctional sulfate 99.6 1.7E-15 3.6E-20 185.9 13.8 176 17-199 71-249 (632)
164 cd04092 mtEFG2_II_like mtEFG2_ 99.6 2.5E-15 5.4E-20 133.9 10.6 80 502-581 1-82 (83)
165 cd04160 Arfrp1 Arfrp1 subfamil 99.6 6.5E-15 1.4E-19 150.1 14.3 116 201-333 1-121 (167)
166 TIGR03596 GTPase_YlqF ribosome 99.6 7.9E-15 1.7E-19 161.7 15.4 169 57-277 4-173 (276)
167 KOG0084|consensus 99.6 2.4E-15 5.2E-20 148.5 9.9 158 2-173 9-172 (205)
168 TIGR00491 aIF-2 translation in 99.6 1.5E-13 3.4E-18 164.3 27.2 170 5-174 6-217 (590)
169 cd01895 EngA2 EngA2 subfamily. 99.6 2E-14 4.4E-19 146.8 17.1 116 199-334 2-128 (174)
170 cd04091 mtEFG1_II_like mtEFG1_ 99.6 5E-15 1.1E-19 131.1 10.8 80 502-581 1-80 (81)
171 TIGR00436 era GTP-binding prot 99.6 7.2E-15 1.6E-19 161.8 14.5 163 4-182 2-173 (270)
172 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 6.8E-15 1.5E-19 149.9 13.4 160 5-172 3-165 (168)
173 cd01855 YqeH YqeH. YqeH is an 99.6 5.1E-15 1.1E-19 154.4 12.7 167 62-277 23-190 (190)
174 PRK12736 elongation factor Tu; 99.6 6.6E-15 1.4E-19 170.4 14.1 162 5-173 15-201 (394)
175 cd01888 eIF2_gamma eIF2-gamma 99.6 6.4E-15 1.4E-19 155.2 12.1 157 6-173 4-199 (203)
176 PLN03126 Elongation factor Tu; 99.6 7.3E-15 1.6E-19 172.1 13.7 150 5-161 84-250 (478)
177 KOG0092|consensus 99.6 5.3E-15 1.1E-19 145.5 10.3 158 2-174 5-168 (200)
178 TIGR03594 GTPase_EngA ribosome 99.6 1.2E-14 2.7E-19 171.5 15.2 113 201-333 1-121 (429)
179 cd01849 YlqF_related_GTPase Yl 99.6 1E-14 2.3E-19 146.7 12.1 154 75-277 1-155 (155)
180 cd01859 MJ1464 MJ1464. This f 99.6 1.8E-14 3.8E-19 145.3 13.7 153 65-277 4-156 (156)
181 cd03689 RF3_II RF3_II: this su 99.6 1E-14 2.2E-19 129.9 10.2 78 504-581 1-83 (85)
182 CHL00071 tufA elongation facto 99.6 7.9E-15 1.7E-19 170.6 12.4 150 5-161 15-181 (409)
183 PLN03127 Elongation factor Tu; 99.6 1.1E-14 2.4E-19 169.9 13.5 162 5-173 64-252 (447)
184 cd01856 YlqF YlqF. Proteins o 99.6 1.5E-14 3.3E-19 148.0 13.0 168 57-277 2-170 (171)
185 PRK03003 GTP-binding protein D 99.6 2.4E-14 5.3E-19 169.8 16.6 115 199-333 38-160 (472)
186 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 1.3E-14 2.8E-19 129.4 10.6 80 502-581 1-82 (83)
187 cd01864 Rab19 Rab19 subfamily. 99.6 4.6E-14 9.9E-19 143.7 15.8 115 198-333 2-122 (165)
188 PRK12735 elongation factor Tu; 99.6 1.6E-14 3.4E-19 167.4 13.9 149 5-160 15-180 (396)
189 cd04165 GTPBP1_like GTPBP1-lik 99.6 2.6E-14 5.6E-19 152.1 14.3 162 4-170 1-220 (224)
190 cd00881 GTP_translation_factor 99.6 3.1E-14 6.7E-19 147.9 14.4 168 5-173 2-187 (189)
191 PRK00049 elongation factor Tu; 99.6 1.4E-14 3.1E-19 167.6 12.9 149 5-160 15-180 (396)
192 cd01897 NOG NOG1 is a nucleola 99.6 5.7E-14 1.2E-18 143.2 15.9 113 200-333 1-127 (168)
193 TIGR00485 EF-Tu translation el 99.6 2.5E-14 5.3E-19 165.9 14.7 154 5-165 15-186 (394)
194 cd01898 Obg Obg subfamily. Th 99.6 6.5E-14 1.4E-18 143.1 16.1 112 201-333 2-128 (170)
195 cd04120 Rab12 Rab12 subfamily. 99.6 1.4E-14 3.1E-19 151.8 11.4 152 5-172 3-162 (202)
196 PRK09563 rbgA GTPase YlqF; Rev 99.6 2E-14 4.2E-19 159.3 12.7 171 57-279 7-178 (287)
197 PRK09518 bifunctional cytidyla 99.6 8.3E-14 1.8E-18 172.9 19.4 117 196-332 272-396 (712)
198 PRK00089 era GTPase Era; Revie 99.6 1E-13 2.3E-18 154.8 18.3 114 199-332 5-126 (292)
199 PRK00741 prfC peptide chain re 99.5 4E-14 8.7E-19 168.0 15.5 127 4-131 12-160 (526)
200 cd01864 Rab19 Rab19 subfamily. 99.5 1.7E-14 3.7E-19 146.8 10.7 154 2-171 3-164 (165)
201 PF02421 FeoB_N: Ferrous iron 99.5 3.8E-15 8.3E-20 147.2 5.6 146 4-168 2-156 (156)
202 cd01879 FeoB Ferrous iron tran 99.5 4.2E-14 9.1E-19 142.5 13.3 107 204-333 1-115 (158)
203 cd01885 EF2 EF2 (for archaea a 99.5 8.2E-14 1.8E-18 147.5 15.8 94 22-115 35-138 (222)
204 cd04121 Rab40 Rab40 subfamily. 99.5 3E-14 6.5E-19 147.9 12.1 156 2-172 6-166 (189)
205 COG1217 TypA Predicted membran 99.5 3.7E-14 8.1E-19 155.5 13.0 149 20-174 38-196 (603)
206 PRK04000 translation initiatio 99.5 4.7E-14 1E-18 163.7 14.8 160 3-173 10-201 (411)
207 KOG0094|consensus 99.5 1.9E-14 4.1E-19 141.3 9.6 156 3-175 23-187 (221)
208 cd00878 Arf_Arl Arf (ADP-ribos 99.5 9.3E-14 2E-18 140.2 14.9 109 201-333 1-114 (158)
209 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 2.7E-14 5.9E-19 148.0 11.3 160 2-173 3-170 (183)
210 cd04154 Arl2 Arl2 subfamily. 99.5 7.8E-14 1.7E-18 143.2 14.6 111 199-333 14-129 (173)
211 PRK15467 ethanolamine utilizat 99.5 5.9E-14 1.3E-18 141.6 13.1 100 200-333 2-105 (158)
212 cd01894 EngA1 EngA1 subfamily. 99.5 5E-14 1.1E-18 141.6 12.5 144 10-171 4-156 (157)
213 TIGR03680 eif2g_arch translati 99.5 5.9E-14 1.3E-18 163.1 14.6 160 3-173 5-196 (406)
214 cd01857 HSR1_MMR1 HSR1/MMR1. 99.5 6.9E-14 1.5E-18 138.3 13.0 136 64-278 2-139 (141)
215 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 4.4E-14 9.5E-19 148.8 12.2 155 3-173 1-168 (201)
216 cd04157 Arl6 Arl6 subfamily. 99.5 1.1E-13 2.5E-18 140.0 14.7 112 201-334 1-119 (162)
217 PRK04004 translation initiatio 99.5 3.8E-12 8.2E-17 153.2 29.7 166 6-172 9-217 (586)
218 cd04151 Arl1 Arl1 subfamily. 99.5 1.4E-13 3E-18 139.0 14.8 110 201-334 1-115 (158)
219 cd04149 Arf6 Arf6 subfamily. 99.5 7.7E-14 1.7E-18 142.5 12.8 154 2-170 9-167 (168)
220 TIGR00503 prfC peptide chain r 99.5 9.4E-14 2E-18 164.9 15.1 128 4-132 13-162 (527)
221 PLN00223 ADP-ribosylation fact 99.5 6.8E-14 1.5E-18 144.6 11.8 156 2-172 17-177 (181)
222 cd04124 RabL2 RabL2 subfamily. 99.5 1.4E-13 3.1E-18 139.5 13.9 113 201-332 2-117 (161)
223 cd04150 Arf1_5_like Arf1-Arf5- 99.5 1.1E-13 2.3E-18 140.1 12.8 152 4-170 2-158 (159)
224 PRK04213 GTP-binding protein; 99.5 2.2E-13 4.7E-18 143.5 15.3 112 198-334 8-145 (201)
225 cd01879 FeoB Ferrous iron tran 99.5 6E-14 1.3E-18 141.3 10.6 145 10-172 3-156 (158)
226 PRK12299 obgE GTPase CgtA; Rev 99.5 3.1E-13 6.7E-18 151.8 17.2 121 192-333 151-285 (335)
227 cd04106 Rab23_lke Rab23-like s 99.5 7.7E-14 1.7E-18 141.3 11.1 151 3-170 1-160 (162)
228 KOG1145|consensus 99.5 1E-13 2.2E-18 155.0 12.8 146 17-170 162-313 (683)
229 cd04151 Arl1 Arl1 subfamily. 99.5 1.2E-13 2.7E-18 139.4 12.4 152 4-170 1-157 (158)
230 cd04158 ARD1 ARD1 subfamily. 99.5 1E-13 2.2E-18 141.7 11.9 156 4-173 1-161 (169)
231 cd04114 Rab30 Rab30 subfamily. 99.5 2.2E-13 4.8E-18 139.0 14.2 115 197-332 5-125 (169)
232 cd01897 NOG NOG1 is a nucleola 99.5 1.3E-13 2.8E-18 140.6 12.4 151 4-171 2-166 (168)
233 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 2.1E-13 4.6E-18 141.4 14.0 113 200-332 4-122 (183)
234 cd04145 M_R_Ras_like M-Ras/R-R 99.5 4.5E-13 9.6E-18 135.9 15.8 111 200-332 3-120 (164)
235 cd04124 RabL2 RabL2 subfamily. 99.5 1E-13 2.2E-18 140.5 11.1 152 3-172 1-157 (161)
236 PRK12298 obgE GTPase CgtA; Rev 99.5 3.4E-13 7.3E-18 154.5 16.6 117 195-332 155-288 (390)
237 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 1.2E-13 2.6E-18 141.4 11.6 158 4-174 2-166 (170)
238 cd01861 Rab6 Rab6 subfamily. 99.5 1.4E-13 3E-18 139.3 12.0 152 3-171 1-160 (161)
239 cd01895 EngA2 EngA2 subfamily. 99.5 2.4E-13 5.1E-18 138.9 13.7 156 2-170 2-172 (174)
240 smart00177 ARF ARF-like small 99.5 1.7E-13 3.8E-18 140.9 12.8 155 2-171 13-172 (175)
241 cd01865 Rab3 Rab3 subfamily. 99.5 1.4E-13 3E-18 140.1 11.8 155 2-173 1-163 (165)
242 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.1E-13 2.5E-18 140.9 11.1 155 5-169 2-165 (167)
243 PTZ00327 eukaryotic translatio 99.5 1.8E-13 3.9E-18 159.2 14.1 154 10-173 41-233 (460)
244 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 4.2E-13 9.2E-18 137.9 15.4 111 199-333 15-130 (174)
245 cd04154 Arl2 Arl2 subfamily. 99.5 1.4E-13 3E-18 141.3 11.7 153 2-169 14-171 (173)
246 cd04164 trmE TrmE (MnmE, ThdF, 99.5 3.4E-13 7.3E-18 135.4 14.2 111 201-333 3-121 (157)
247 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 1.5E-13 3.2E-18 140.0 11.5 153 2-171 2-162 (166)
248 cd04157 Arl6 Arl6 subfamily. 99.5 1.6E-13 3.4E-18 138.9 11.6 151 5-169 2-160 (162)
249 COG0218 Predicted GTPase [Gene 99.5 7.1E-13 1.5E-17 133.5 15.9 133 194-348 19-165 (200)
250 TIGR02729 Obg_CgtA Obg family 99.5 5.1E-13 1.1E-17 150.1 16.7 121 192-333 150-287 (329)
251 smart00175 RAB Rab subfamily o 99.5 5.6E-13 1.2E-17 135.1 15.7 111 201-332 2-118 (164)
252 cd04128 Spg1 Spg1p. Spg1p (se 99.5 9.6E-14 2.1E-18 143.6 10.1 156 3-173 1-166 (182)
253 cd04169 RF3 RF3 subfamily. Pe 99.5 3.5E-13 7.6E-18 147.3 15.0 110 22-131 43-152 (267)
254 TIGR03597 GTPase_YqeH ribosome 99.5 1.5E-13 3.4E-18 156.7 12.7 233 61-349 51-297 (360)
255 cd04106 Rab23_lke Rab23-like s 99.5 5.4E-13 1.2E-17 135.1 15.3 111 201-332 2-119 (162)
256 PRK04213 GTP-binding protein; 99.5 1.8E-13 4E-18 144.1 12.3 159 2-174 9-193 (201)
257 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 2.4E-13 5.2E-18 139.7 12.8 153 2-169 15-172 (174)
258 smart00178 SAR Sar1p-like memb 99.5 2.6E-13 5.7E-18 140.8 13.1 161 2-170 17-182 (184)
259 cd04113 Rab4 Rab4 subfamily. 99.5 3.4E-13 7.5E-18 136.5 13.7 113 201-332 2-118 (161)
260 smart00173 RAS Ras subfamily o 99.5 4.4E-13 9.6E-18 136.1 14.6 110 201-332 2-118 (164)
261 KOG0093|consensus 99.5 1.6E-13 3.5E-18 127.7 10.2 155 2-173 21-183 (193)
262 TIGR03598 GTPase_YsxC ribosome 99.5 2.3E-13 5E-18 140.5 12.6 119 193-333 12-143 (179)
263 cd04163 Era Era subfamily. Er 99.5 1.1E-12 2.3E-17 132.9 17.2 113 200-332 4-124 (168)
264 cd01861 Rab6 Rab6 subfamily. 99.5 8.9E-13 1.9E-17 133.3 16.5 112 200-332 1-118 (161)
265 PTZ00133 ADP-ribosylation fact 99.5 2.2E-13 4.7E-18 141.0 12.2 157 2-173 17-178 (182)
266 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 1.7E-13 3.7E-18 140.5 11.3 153 2-172 2-163 (172)
267 cd04167 Snu114p Snu114p subfam 99.5 2.9E-13 6.2E-18 143.9 13.4 156 4-162 2-192 (213)
268 cd04158 ARD1 ARD1 subfamily. 99.5 4.5E-13 9.7E-18 137.0 14.3 109 201-333 1-114 (169)
269 cd03691 BipA_TypA_II BipA_TypA 99.5 2.3E-13 5E-18 122.2 10.7 80 502-581 1-85 (86)
270 KOG0078|consensus 99.5 2.6E-13 5.6E-18 136.5 12.0 154 2-172 12-173 (207)
271 cd04136 Rap_like Rap-like subf 99.5 2E-13 4.4E-18 138.3 11.6 152 2-171 1-161 (163)
272 cd01683 EF2_IV_snRNP EF-2_doma 99.5 9.5E-14 2.1E-18 141.1 9.1 98 701-801 75-178 (178)
273 cd00879 Sar1 Sar1 subfamily. 99.5 4.2E-13 9.1E-18 140.0 14.1 111 199-333 19-134 (190)
274 TIGR00157 ribosome small subun 99.5 1.5E-13 3.2E-18 148.3 11.0 157 63-280 26-184 (245)
275 PRK14845 translation initiatio 99.5 2.2E-11 4.8E-16 152.3 31.7 145 29-173 487-673 (1049)
276 PRK12289 GTPase RsgA; Reviewed 99.5 2.3E-13 5.1E-18 153.1 12.9 152 68-280 84-237 (352)
277 COG0050 TufB GTPases - transla 99.5 4E-13 8.6E-18 139.6 13.4 143 25-173 50-201 (394)
278 cd04122 Rab14 Rab14 subfamily. 99.5 2.5E-13 5.5E-18 138.3 12.0 154 2-170 2-161 (166)
279 cd00877 Ran Ran (Ras-related n 99.5 1.5E-13 3.4E-18 140.0 10.4 154 3-173 1-159 (166)
280 cd01860 Rab5_related Rab5-rela 99.5 5.9E-13 1.3E-17 134.9 14.6 114 200-332 2-119 (163)
281 cd01867 Rab8_Rab10_Rab13_like 99.5 2.7E-13 5.8E-18 138.3 12.1 155 2-171 3-163 (167)
282 cd04145 M_R_Ras_like M-Ras/R-R 99.5 1.6E-13 3.4E-18 139.3 10.3 154 2-171 2-162 (164)
283 cd04142 RRP22 RRP22 subfamily. 99.5 1.8E-13 3.9E-18 143.4 10.9 155 3-171 1-172 (198)
284 cd04149 Arf6 Arf6 subfamily. 99.5 6.6E-13 1.4E-17 135.6 14.8 110 200-333 10-124 (168)
285 COG0486 ThdF Predicted GTPase 99.5 2.7E-13 5.9E-18 152.0 12.8 114 200-334 218-339 (454)
286 cd04127 Rab27A Rab27a subfamil 99.5 2.3E-13 5E-18 140.6 11.2 153 2-171 4-175 (180)
287 cd04143 Rhes_like Rhes_like su 99.5 3E-13 6.5E-18 146.3 12.5 155 3-172 1-170 (247)
288 TIGR00231 small_GTP small GTP- 99.5 2.4E-13 5.2E-18 136.0 11.0 112 200-333 2-122 (161)
289 PRK05291 trmE tRNA modificatio 99.5 4E-13 8.6E-18 157.7 14.5 112 200-333 216-335 (449)
290 smart00173 RAS Ras subfamily o 99.5 2.9E-13 6.4E-18 137.4 11.7 152 3-172 1-161 (164)
291 PTZ00369 Ras-like protein; Pro 99.5 2.3E-13 5E-18 141.9 11.2 154 2-173 5-167 (189)
292 PRK12297 obgE GTPase CgtA; Rev 99.5 7.6E-13 1.7E-17 152.2 16.5 120 192-332 151-287 (424)
293 cd04112 Rab26 Rab26 subfamily. 99.5 2.9E-13 6.4E-18 141.3 11.9 155 3-174 1-164 (191)
294 cd01874 Cdc42 Cdc42 subfamily. 99.5 1.2E-13 2.5E-18 142.2 8.7 162 3-170 2-172 (175)
295 cd03699 lepA_II lepA_II: This 99.5 3E-13 6.5E-18 121.2 10.2 79 502-581 1-85 (86)
296 cd01863 Rab18 Rab18 subfamily. 99.5 6.5E-13 1.4E-17 134.4 13.9 113 201-332 2-119 (161)
297 cd04109 Rab28 Rab28 subfamily. 99.5 2.8E-13 6.1E-18 144.2 11.7 154 3-173 1-166 (215)
298 COG2229 Predicted GTPase [Gene 99.5 1.6E-12 3.5E-17 127.7 15.8 130 200-340 11-142 (187)
299 PRK00089 era GTPase Era; Revie 99.5 6E-13 1.3E-17 148.7 14.8 162 5-180 8-178 (292)
300 cd04175 Rap1 Rap1 subgroup. T 99.5 1.5E-13 3.3E-18 139.6 9.2 153 2-172 1-162 (164)
301 cd01865 Rab3 Rab3 subfamily. 99.5 7E-13 1.5E-17 134.9 14.0 115 200-333 2-120 (165)
302 PRK12296 obgE GTPase CgtA; Rev 99.5 7.4E-13 1.6E-17 153.9 15.8 120 192-332 152-297 (500)
303 cd04147 Ras_dva Ras-dva subfam 99.5 4.9E-13 1.1E-17 140.5 13.0 111 201-333 1-118 (198)
304 smart00178 SAR Sar1p-like memb 99.5 7.6E-13 1.6E-17 137.3 14.3 111 199-333 17-132 (184)
305 cd04138 H_N_K_Ras_like H-Ras/N 99.5 3.7E-13 8.1E-18 136.0 11.7 151 2-170 1-159 (162)
306 cd01878 HflX HflX subfamily. 99.4 1.1E-12 2.4E-17 138.5 15.5 115 198-333 40-167 (204)
307 cd04170 EF-G_bact Elongation f 99.4 7.3E-13 1.6E-17 145.9 14.5 126 6-132 3-146 (268)
308 cd01875 RhoG RhoG subfamily. 99.4 2.3E-13 4.9E-18 142.1 9.9 164 3-172 4-176 (191)
309 cd04113 Rab4 Rab4 subfamily. 99.4 3.5E-13 7.7E-18 136.4 10.9 153 3-170 1-159 (161)
310 cd04176 Rap2 Rap2 subgroup. T 99.4 4.8E-13 1E-17 135.7 11.9 152 2-171 1-161 (163)
311 cd01868 Rab11_like Rab11-like. 99.4 4.3E-13 9.3E-18 136.4 11.5 155 2-171 3-163 (165)
312 PLN03071 GTP-binding nuclear p 99.4 2.9E-13 6.2E-18 144.3 10.6 155 2-173 13-172 (219)
313 cd01867 Rab8_Rab10_Rab13_like 99.4 1.3E-12 2.7E-17 133.4 14.9 114 198-332 2-121 (167)
314 cd04150 Arf1_5_like Arf1-Arf5- 99.4 1.1E-12 2.4E-17 132.6 14.4 109 201-333 2-115 (159)
315 cd01862 Rab7 Rab7 subfamily. 99.4 1.4E-12 3.1E-17 133.3 15.4 111 201-332 2-122 (172)
316 cd00879 Sar1 Sar1 subfamily. 99.4 4.7E-13 1E-17 139.6 12.0 162 2-171 19-189 (190)
317 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 1.5E-12 3.2E-17 137.2 15.8 111 201-332 2-123 (201)
318 cd01892 Miro2 Miro2 subfamily. 99.4 3.3E-13 7.2E-18 137.9 10.5 155 2-172 4-165 (169)
319 cd04119 RJL RJL (RabJ-Like) su 99.4 5.2E-13 1.1E-17 135.8 11.9 152 3-171 1-165 (168)
320 cd00880 Era_like Era (E. coli 99.4 2E-12 4.3E-17 129.5 16.0 110 204-333 1-118 (163)
321 PRK00093 GTP-binding protein D 99.4 5E-13 1.1E-17 158.0 13.2 157 3-171 174-342 (435)
322 KOG1423|consensus 99.4 3.7E-12 8E-17 133.6 17.9 120 194-333 67-199 (379)
323 cd04156 ARLTS1 ARLTS1 subfamil 99.4 6E-13 1.3E-17 134.5 11.8 153 4-170 1-159 (160)
324 smart00176 RAN Ran (Ras-relate 99.4 4.6E-13 1E-17 140.2 11.2 148 10-173 2-154 (200)
325 cd04140 ARHI_like ARHI subfami 99.4 4.3E-13 9.3E-18 136.5 10.7 153 3-171 2-163 (165)
326 KOG0394|consensus 99.4 1.3E-13 2.8E-18 134.1 6.3 159 2-173 9-178 (210)
327 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 7.2E-13 1.6E-17 134.8 12.2 153 5-170 2-163 (164)
328 cd04138 H_N_K_Ras_like H-Ras/N 99.4 2.9E-12 6.4E-17 129.4 16.5 111 200-332 2-119 (162)
329 cd04159 Arl10_like Arl10-like 99.4 2.2E-12 4.9E-17 129.4 15.5 109 202-333 2-115 (159)
330 cd01868 Rab11_like Rab11-like. 99.4 2.8E-12 6.2E-17 130.3 16.4 113 199-332 3-121 (165)
331 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 2.4E-12 5.2E-17 131.1 15.8 113 199-332 2-120 (166)
332 cd04139 RalA_RalB RalA/RalB su 99.4 1.3E-12 2.9E-17 132.3 13.9 113 201-333 2-119 (164)
333 cd00878 Arf_Arl Arf (ADP-ribos 99.4 7E-13 1.5E-17 133.8 11.7 152 4-170 1-157 (158)
334 TIGR00450 mnmE_trmE_thdF tRNA 99.4 1.6E-12 3.5E-17 151.6 16.3 114 199-333 203-324 (442)
335 smart00177 ARF ARF-like small 99.4 2.4E-12 5.3E-17 132.4 15.9 110 200-333 14-128 (175)
336 cd04133 Rop_like Rop subfamily 99.4 5.2E-13 1.1E-17 137.0 10.8 157 3-172 2-172 (176)
337 PTZ00369 Ras-like protein; Pro 99.4 1.4E-12 2.9E-17 136.1 14.1 113 200-332 6-123 (189)
338 cd01871 Rac1_like Rac1-like su 99.4 6.2E-13 1.3E-17 136.6 11.3 162 3-170 2-172 (174)
339 cd00877 Ran Ran (Ras-related n 99.4 1.1E-12 2.5E-17 133.6 13.1 113 201-332 2-117 (166)
340 cd04155 Arl3 Arl3 subfamily. 99.4 1.2E-12 2.7E-17 134.1 13.5 111 199-333 14-129 (173)
341 cd04119 RJL RJL (RabJ-Like) su 99.4 1.7E-12 3.7E-17 132.0 14.4 113 201-332 2-123 (168)
342 PRK12288 GTPase RsgA; Reviewed 99.4 1.4E-12 3.1E-17 146.9 15.0 152 71-280 118-270 (347)
343 cd01898 Obg Obg subfamily. Th 99.4 8.6E-13 1.9E-17 134.8 12.2 152 5-171 3-169 (170)
344 cd04175 Rap1 Rap1 subgroup. T 99.4 3.1E-12 6.7E-17 130.0 16.1 111 200-332 2-119 (164)
345 COG4108 PrfC Peptide chain rel 99.4 7E-13 1.5E-17 145.1 11.9 112 20-131 51-162 (528)
346 cd04117 Rab15 Rab15 subfamily. 99.4 7.4E-13 1.6E-17 134.2 11.4 151 3-170 1-159 (161)
347 TIGR03156 GTP_HflX GTP-binding 99.4 1.3E-12 2.8E-17 148.2 14.6 114 198-332 188-314 (351)
348 cd04114 Rab30 Rab30 subfamily. 99.4 6.5E-13 1.4E-17 135.6 11.1 155 2-171 7-167 (169)
349 KOG0466|consensus 99.4 5.4E-13 1.2E-17 138.7 10.2 239 197-569 36-336 (466)
350 cd04112 Rab26 Rab26 subfamily. 99.4 1.6E-12 3.5E-17 135.7 14.1 114 201-332 2-119 (191)
351 cd01866 Rab2 Rab2 subfamily. 99.4 1E-12 2.2E-17 134.2 12.3 156 2-172 4-165 (168)
352 smart00175 RAB Rab subfamily o 99.4 8.4E-13 1.8E-17 133.8 11.6 153 3-172 1-161 (164)
353 PLN00223 ADP-ribosylation fact 99.4 3.5E-12 7.6E-17 131.9 16.4 111 200-334 18-133 (181)
354 PRK00454 engB GTP-binding prot 99.4 2.7E-12 5.7E-17 134.6 15.7 117 195-333 20-149 (196)
355 cd04110 Rab35 Rab35 subfamily. 99.4 9.1E-13 2E-17 138.6 12.0 157 2-173 6-167 (199)
356 TIGR03156 GTP_HflX GTP-binding 99.4 5.8E-13 1.3E-17 151.0 11.3 148 3-171 190-350 (351)
357 cd01866 Rab2 Rab2 subfamily. 99.4 2.4E-12 5.1E-17 131.5 14.8 115 199-332 4-122 (168)
358 cd04136 Rap_like Rap-like subf 99.4 2.6E-12 5.6E-17 130.2 14.9 111 200-332 2-119 (163)
359 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 1.2E-12 2.6E-17 139.7 12.9 154 2-172 13-187 (232)
360 cd01862 Rab7 Rab7 subfamily. 99.4 1.1E-12 2.4E-17 134.2 12.3 154 3-172 1-166 (172)
361 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 3.2E-12 7E-17 130.0 15.4 110 202-334 2-114 (164)
362 cd04144 Ras2 Ras2 subfamily. 99.4 1.1E-12 2.4E-17 136.9 12.2 152 4-173 1-163 (190)
363 cd03700 eEF2_snRNP_like_II EF2 99.4 7.5E-13 1.6E-17 120.5 9.6 80 502-581 1-92 (93)
364 COG0486 ThdF Predicted GTPase 99.4 6.8E-13 1.5E-17 148.9 11.2 150 3-173 218-376 (454)
365 cd04147 Ras_dva Ras-dva subfam 99.4 6.4E-13 1.4E-17 139.6 10.3 156 4-173 1-163 (198)
366 cd04116 Rab9 Rab9 subfamily. 99.4 6.1E-13 1.3E-17 136.0 10.0 154 2-170 5-168 (170)
367 KOG0080|consensus 99.4 1.2E-13 2.6E-18 130.6 4.2 163 2-179 11-180 (209)
368 cd04127 Rab27A Rab27a subfamil 99.4 2.7E-12 5.9E-17 132.5 14.8 116 198-332 3-133 (180)
369 cd04122 Rab14 Rab14 subfamily. 99.4 2.6E-12 5.5E-17 130.9 14.4 115 199-332 2-120 (166)
370 cd01893 Miro1 Miro1 subfamily. 99.4 2.8E-12 6.2E-17 130.6 14.6 112 201-333 2-117 (166)
371 cd04178 Nucleostemin_like Nucl 99.4 1.1E-12 2.4E-17 133.4 11.4 158 75-277 1-172 (172)
372 cd04156 ARLTS1 ARLTS1 subfamil 99.4 2.1E-12 4.5E-17 130.5 13.5 109 201-333 1-115 (160)
373 cd01863 Rab18 Rab18 subfamily. 99.4 1E-12 2.3E-17 132.9 11.2 152 3-171 1-160 (161)
374 cd04123 Rab21 Rab21 subfamily. 99.4 4.9E-12 1.1E-16 127.7 16.1 111 201-332 2-118 (162)
375 cd04140 ARHI_like ARHI subfami 99.4 4E-12 8.7E-17 129.4 15.4 113 200-332 2-121 (165)
376 cd04120 Rab12 Rab12 subfamily. 99.4 4.7E-12 1E-16 132.8 16.2 111 201-332 2-118 (202)
377 cd04115 Rab33B_Rab33A Rab33B/R 99.4 4E-12 8.6E-17 130.1 15.3 113 199-332 2-122 (170)
378 cd01881 Obg_like The Obg-like 99.4 2.7E-12 5.9E-17 131.7 14.1 109 204-333 1-134 (176)
379 cd01854 YjeQ_engC YjeQ/EngC. 99.4 1.2E-12 2.5E-17 145.0 12.1 151 70-281 75-227 (287)
380 cd00154 Rab Rab family. Rab G 99.4 2.8E-12 6.2E-17 128.6 14.0 113 201-332 2-118 (159)
381 COG3276 SelB Selenocysteine-sp 99.4 2.1E-12 4.6E-17 143.0 13.9 190 10-220 7-205 (447)
382 TIGR02528 EutP ethanolamine ut 99.4 1.4E-12 2.9E-17 129.2 11.4 96 201-332 2-101 (142)
383 PLN03110 Rab GTPase; Provision 99.4 1.2E-12 2.6E-17 139.3 11.8 156 2-174 12-175 (216)
384 KOG1144|consensus 99.4 7E-12 1.5E-16 143.9 18.5 307 6-323 478-850 (1064)
385 PTZ00133 ADP-ribosylation fact 99.4 2.9E-12 6.3E-17 132.6 14.3 110 200-333 18-132 (182)
386 cd01893 Miro1 Miro1 subfamily. 99.4 9.6E-13 2.1E-17 134.1 10.5 155 4-172 2-163 (166)
387 cd01860 Rab5_related Rab5-rela 99.4 9.9E-13 2.2E-17 133.3 10.5 154 2-172 1-162 (163)
388 cd04111 Rab39 Rab39 subfamily. 99.4 9.1E-13 2E-17 139.7 10.5 155 2-173 2-166 (211)
389 TIGR02729 Obg_CgtA Obg family 99.4 1.6E-12 3.5E-17 146.0 13.1 153 4-172 159-328 (329)
390 PRK05291 trmE tRNA modificatio 99.4 8.7E-13 1.9E-17 154.8 11.3 146 3-173 216-370 (449)
391 cd04115 Rab33B_Rab33A Rab33B/R 99.4 1.4E-12 2.9E-17 133.6 11.3 152 2-170 2-166 (170)
392 cd04110 Rab35 Rab35 subfamily. 99.4 4.6E-12 9.9E-17 133.2 15.4 114 198-332 5-123 (199)
393 PRK12298 obgE GTPase CgtA; Rev 99.4 2E-12 4.4E-17 148.2 13.6 164 4-182 161-342 (390)
394 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 1.4E-12 3E-17 134.7 11.1 152 2-170 5-177 (182)
395 TIGR03598 GTPase_YsxC ribosome 99.4 1.4E-12 3E-17 134.8 11.0 146 2-162 18-179 (179)
396 cd04142 RRP22 RRP22 subfamily. 99.4 3.7E-12 8E-17 133.5 14.3 111 201-332 2-129 (198)
397 PRK12299 obgE GTPase CgtA; Rev 99.4 2.2E-12 4.8E-17 145.0 13.5 155 4-173 160-328 (335)
398 cd04139 RalA_RalB RalA/RalB su 99.4 1.3E-12 2.8E-17 132.4 10.5 152 3-172 1-161 (164)
399 cd04131 Rnd Rnd subfamily. Th 99.4 1.3E-12 2.9E-17 134.5 10.7 163 2-170 1-173 (178)
400 PRK11058 GTPase HflX; Provisio 99.4 2.9E-12 6.2E-17 148.6 14.6 114 198-332 196-322 (426)
401 KOG0098|consensus 99.4 1E-12 2.2E-17 128.1 8.8 154 2-172 6-167 (216)
402 PLN03118 Rab family protein; P 99.4 3.8E-12 8.3E-17 135.1 14.1 112 199-332 14-133 (211)
403 cd04177 RSR1 RSR1 subgroup. R 99.4 4.9E-12 1.1E-16 129.1 14.3 110 201-332 3-119 (168)
404 cd04090 eEF2_II_snRNP Loc2 eEF 99.4 2.3E-12 4.9E-17 117.5 10.4 79 502-580 1-91 (94)
405 cd04101 RabL4 RabL4 (Rab-like4 99.4 2.3E-12 5E-17 130.8 11.5 151 4-171 2-162 (164)
406 cd04116 Rab9 Rab9 subfamily. 99.4 9.4E-12 2E-16 127.2 16.1 114 198-332 4-127 (170)
407 COG0218 Predicted GTPase [Gene 99.4 3.1E-12 6.8E-17 128.8 12.1 152 9-173 29-197 (200)
408 cd04161 Arl2l1_Arl13_like Arl2 99.4 6.2E-12 1.3E-16 128.3 14.6 111 201-335 1-116 (167)
409 KOG0087|consensus 99.4 7.9E-13 1.7E-17 132.1 7.6 154 2-172 14-175 (222)
410 cd04161 Arl2l1_Arl13_like Arl2 99.4 3.2E-12 6.9E-17 130.4 12.3 152 5-169 2-165 (167)
411 cd04126 Rab20 Rab20 subfamily. 99.4 2.4E-12 5.2E-17 136.6 11.7 165 3-174 1-191 (220)
412 COG0370 FeoB Fe2+ transport sy 99.4 2.7E-12 5.8E-17 150.0 13.1 110 200-332 4-121 (653)
413 PLN03118 Rab family protein; P 99.4 2.8E-12 6E-17 136.2 12.2 157 2-174 14-178 (211)
414 PRK12296 obgE GTPase CgtA; Rev 99.4 3.2E-12 6.9E-17 148.7 13.7 155 4-174 161-341 (500)
415 cd04144 Ras2 Ras2 subfamily. 99.4 7.6E-12 1.7E-16 130.5 15.3 110 201-332 1-119 (190)
416 cd04137 RheB Rheb (Ras Homolog 99.4 7.2E-12 1.6E-16 129.4 15.0 111 200-332 2-119 (180)
417 cd01882 BMS1 Bms1. Bms1 is an 99.4 7.2E-13 1.6E-17 141.6 7.7 154 200-381 40-209 (225)
418 cd01881 Obg_like The Obg-like 99.4 2.1E-12 4.5E-17 132.6 10.6 147 10-170 3-174 (176)
419 cd04164 trmE TrmE (MnmE, ThdF, 99.4 2.6E-12 5.6E-17 129.0 11.1 145 3-171 2-155 (157)
420 cd04146 RERG_RasL11_like RERG/ 99.4 4.6E-12 1E-16 128.9 13.0 112 201-332 1-119 (165)
421 cd04123 Rab21 Rab21 subfamily. 99.4 3.2E-12 6.9E-17 129.2 11.7 152 3-171 1-160 (162)
422 cd00876 Ras Ras family. The R 99.4 9E-12 2E-16 125.5 14.9 111 201-333 1-118 (160)
423 cd04146 RERG_RasL11_like RERG/ 99.4 1.4E-12 3E-17 132.7 9.0 150 4-171 1-162 (165)
424 cd04176 Rap2 Rap2 subgroup. T 99.4 1E-11 2.2E-16 126.0 15.3 112 201-332 3-119 (163)
425 cd04130 Wrch_1 Wrch-1 subfamil 99.4 8.2E-13 1.8E-17 135.6 7.3 161 3-169 1-170 (173)
426 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 9.1E-12 2E-16 127.5 14.8 111 201-332 2-119 (170)
427 cd01681 aeEF2_snRNP_like_IV Th 99.4 1.7E-12 3.7E-17 133.1 9.4 99 699-800 73-177 (177)
428 PLN03110 Rab GTPase; Provision 99.4 8.4E-12 1.8E-16 132.9 15.0 115 197-332 10-130 (216)
429 PRK12297 obgE GTPase CgtA; Rev 99.4 3.7E-12 8.1E-17 146.6 13.0 152 4-174 160-328 (424)
430 cd04101 RabL4 RabL4 (Rab-like4 99.4 9E-12 2E-16 126.4 14.4 115 201-332 2-120 (164)
431 cd04132 Rho4_like Rho4-like su 99.4 2.7E-12 5.9E-17 133.5 10.8 153 4-173 2-167 (187)
432 cd01878 HflX HflX subfamily. 99.4 2.7E-12 5.9E-17 135.5 10.9 149 3-171 42-203 (204)
433 PRK00098 GTPase RsgA; Reviewed 99.4 3.3E-12 7.3E-17 142.1 11.9 150 70-279 77-228 (298)
434 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 4E-12 8.6E-17 135.0 11.9 164 2-171 1-174 (222)
435 cd04125 RabA_like RabA-like su 99.4 4E-12 8.6E-17 132.4 11.7 154 3-173 1-162 (188)
436 TIGR00231 small_GTP small GTP- 99.4 3.6E-12 7.8E-17 127.5 10.9 151 2-169 1-160 (161)
437 KOG0464|consensus 99.3 2.5E-13 5.5E-18 145.9 2.4 112 20-131 72-183 (753)
438 cd04121 Rab40 Rab40 subfamily. 99.3 2E-11 4.4E-16 126.7 16.6 114 198-332 5-123 (189)
439 TIGR00450 mnmE_trmE_thdF tRNA 99.3 3.7E-12 8.1E-17 148.5 12.3 149 2-173 203-360 (442)
440 PRK11058 GTPase HflX; Provisio 99.3 4.4E-12 9.5E-17 147.1 12.9 151 3-172 198-361 (426)
441 cd04134 Rho3 Rho3 subfamily. 99.3 1.2E-12 2.7E-17 136.3 7.5 165 4-172 2-173 (189)
442 TIGR00437 feoB ferrous iron tr 99.3 5.6E-12 1.2E-16 152.3 14.2 104 206-332 1-112 (591)
443 cd04109 Rab28 Rab28 subfamily. 99.3 1.4E-11 3E-16 131.2 15.6 111 201-332 2-122 (215)
444 cd04118 Rab24 Rab24 subfamily. 99.3 1.2E-11 2.6E-16 129.3 14.8 112 201-332 2-118 (193)
445 PLN03071 GTP-binding nuclear p 99.3 7.2E-12 1.6E-16 133.6 13.2 115 199-332 13-130 (219)
446 KOG0075|consensus 99.3 1.6E-11 3.5E-16 114.7 13.6 156 4-173 22-182 (186)
447 cd04177 RSR1 RSR1 subgroup. R 99.3 4.1E-12 8.9E-17 129.7 10.9 152 2-170 1-161 (168)
448 cd04135 Tc10 TC10 subfamily. 99.3 8.8E-12 1.9E-16 127.9 13.3 111 201-333 2-118 (174)
449 PRK13796 GTPase YqeH; Provisio 99.3 1E-11 2.3E-16 141.8 15.0 158 66-278 61-221 (365)
450 PRK09554 feoB ferrous iron tra 99.3 3.5E-12 7.6E-17 157.4 11.9 152 2-172 3-167 (772)
451 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 1.2E-11 2.6E-16 126.8 14.0 111 200-332 3-120 (172)
452 cd00154 Rab Rab family. Rab G 99.3 4.8E-12 1E-16 126.9 10.8 152 3-169 1-158 (159)
453 cd04159 Arl10_like Arl10-like 99.3 9.9E-12 2.1E-16 124.7 12.9 152 5-170 2-158 (159)
454 PLN03108 Rab family protein; P 99.3 7E-12 1.5E-16 132.9 12.2 154 2-172 6-167 (210)
455 cd04143 Rhes_like Rhes_like su 99.3 1.3E-11 2.9E-16 133.5 14.5 110 201-332 2-126 (247)
456 cd04126 Rab20 Rab20 subfamily. 99.3 1.9E-11 4.1E-16 129.7 15.3 109 201-333 2-114 (220)
457 cd04118 Rab24 Rab24 subfamily. 99.3 7E-12 1.5E-16 131.1 11.6 157 3-173 1-166 (193)
458 cd04125 RabA_like RabA-like su 99.3 1.5E-11 3.3E-16 128.0 14.0 113 201-332 2-118 (188)
459 PF00025 Arf: ADP-ribosylation 99.3 2.8E-12 6E-17 131.8 8.2 154 3-170 15-173 (175)
460 cd00157 Rho Rho (Ras homology) 99.3 1.2E-11 2.7E-16 126.3 12.9 112 201-334 2-119 (171)
461 KOG0070|consensus 99.3 7.4E-12 1.6E-16 123.5 10.6 155 3-172 18-177 (181)
462 PRK00454 engB GTP-binding prot 99.3 8.8E-12 1.9E-16 130.6 12.0 155 2-173 24-194 (196)
463 smart00174 RHO Rho (Ras homolo 99.3 4E-12 8.7E-17 130.5 9.2 159 8-171 3-170 (174)
464 KOG0459|consensus 99.3 2.2E-12 4.8E-17 139.6 7.4 208 10-220 117-339 (501)
465 cd01874 Cdc42 Cdc42 subfamily. 99.3 2.6E-11 5.7E-16 124.7 14.6 111 200-333 2-119 (175)
466 PF01926 MMR_HSR1: 50S ribosom 99.3 1.1E-11 2.5E-16 118.2 11.0 107 201-328 1-116 (116)
467 PLN03108 Rab family protein; P 99.3 2.8E-11 6E-16 128.3 15.1 117 197-332 4-124 (210)
468 TIGR02528 EutP ethanolamine ut 99.3 3.4E-12 7.5E-17 126.3 7.7 137 3-169 1-141 (142)
469 cd04103 Centaurin_gamma Centau 99.3 5.1E-12 1.1E-16 127.6 9.0 149 3-170 1-156 (158)
470 KOG0095|consensus 99.3 8.9E-12 1.9E-16 116.3 9.6 156 2-172 7-168 (213)
471 KOG1489|consensus 99.3 2.1E-11 4.5E-16 129.0 13.3 120 192-332 189-325 (366)
472 cd04134 Rho3 Rho3 subfamily. 99.3 2.2E-11 4.9E-16 126.9 13.6 115 200-334 1-119 (189)
473 smart00176 RAN Ran (Ras-relate 99.3 1.6E-11 3.4E-16 128.6 12.3 109 205-332 1-112 (200)
474 cd04132 Rho4_like Rho4-like su 99.3 3E-11 6.5E-16 125.6 14.5 109 201-332 2-118 (187)
475 cd01870 RhoA_like RhoA-like su 99.3 6.5E-12 1.4E-16 129.0 9.2 164 2-171 1-173 (175)
476 TIGR00437 feoB ferrous iron tr 99.3 5.3E-12 1.1E-16 152.5 9.8 144 10-171 1-153 (591)
477 COG2229 Predicted GTPase [Gene 99.3 2.5E-11 5.5E-16 119.4 12.6 151 4-171 12-176 (187)
478 cd04155 Arl3 Arl3 subfamily. 99.3 1.2E-11 2.6E-16 126.8 10.9 153 2-169 14-171 (173)
479 cd04163 Era Era subfamily. Er 99.3 2.3E-11 5.1E-16 123.0 12.8 155 3-171 4-167 (168)
480 cd01892 Miro2 Miro2 subfamily. 99.3 3.3E-11 7.2E-16 123.2 13.8 115 198-332 3-121 (169)
481 KOG0079|consensus 99.3 5.1E-12 1.1E-16 117.9 6.8 156 2-172 8-168 (198)
482 cd04148 RGK RGK subfamily. Th 99.3 1.3E-11 2.8E-16 131.9 10.7 152 3-173 1-163 (221)
483 cd01873 RhoBTB RhoBTB subfamil 99.3 1E-11 2.2E-16 129.8 9.6 151 1-170 1-193 (195)
484 cd04135 Tc10 TC10 subfamily. 99.3 6.1E-12 1.3E-16 129.1 7.8 162 3-170 1-171 (174)
485 PF00025 Arf: ADP-ribosylation 99.3 2E-11 4.3E-16 125.5 11.5 114 197-334 12-130 (175)
486 cd04111 Rab39 Rab39 subfamily. 99.3 4.8E-11 1E-15 126.5 14.5 112 200-332 3-122 (211)
487 cd04128 Spg1 Spg1p. Spg1p (se 99.3 4.1E-11 8.9E-16 124.0 13.6 110 201-332 2-117 (182)
488 cd01871 Rac1_like Rac1-like su 99.3 5.7E-11 1.2E-15 122.0 14.5 114 200-333 2-119 (174)
489 cd04117 Rab15 Rab15 subfamily. 99.3 9.9E-11 2.1E-15 118.7 16.1 111 201-332 2-118 (161)
490 KOG0086|consensus 99.3 7.9E-12 1.7E-16 117.1 7.2 155 2-171 9-169 (214)
491 cd04137 RheB Rheb (Ras Homolog 99.3 1.9E-11 4.2E-16 126.2 11.0 153 3-173 2-163 (180)
492 PRK15467 ethanolamine utilizat 99.3 1.7E-11 3.7E-16 123.7 10.2 142 4-174 3-148 (158)
493 cd01870 RhoA_like RhoA-like su 99.3 4E-11 8.6E-16 123.2 13.2 112 200-333 2-119 (175)
494 PF10662 PduV-EutP: Ethanolami 99.3 1.7E-11 3.7E-16 118.4 9.3 97 200-332 2-102 (143)
495 cd01876 YihA_EngB The YihA (En 99.3 1.3E-10 2.7E-15 118.0 16.3 109 202-332 2-123 (170)
496 COG1084 Predicted GTPase [Gene 99.3 5.8E-11 1.3E-15 127.1 13.9 116 198-334 167-295 (346)
497 cd01875 RhoG RhoG subfamily. 99.3 5.9E-11 1.3E-15 123.9 13.8 114 200-333 4-121 (191)
498 KOG1532|consensus 99.3 5.9E-12 1.3E-16 129.8 6.0 202 200-470 20-263 (366)
499 cd00880 Era_like Era (E. coli 99.3 5.1E-11 1.1E-15 119.2 12.8 150 10-170 3-161 (163)
500 cd00882 Ras_like_GTPase Ras-li 99.2 3.9E-11 8.5E-16 118.6 11.5 108 204-333 1-116 (157)
No 1
>KOG0465|consensus
Probab=100.00 E-value=6.4e-144 Score=1193.44 Aligned_cols=687 Identities=62% Similarity=1.014 Sum_probs=653.5
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEE
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINII 272 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~li 272 (1043)
..+.+++|||++++|.++||||++++++++.|.+...++++++ .+.+|+++.|++||||++++...+.|+++++|+|
T Consensus 33 ~~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~---~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiI 109 (721)
T KOG0465|consen 33 RIPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG---GATMDSMELERQRGITIQSAATYFTWRDYRINII 109 (721)
T ss_pred cCchhhhcccceEEEEecCCceeeheeeeecceeeeccccccC---ceeeehHHHHHhcCceeeeceeeeeeccceeEEe
Confidence 4556689999999999999999999999999999999999998 6789999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCce
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAA 352 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~ 352 (1043)
|||||+||.-|+++||++.|+||+|+|++.|++.||..+|+++.++++|.+.|+||||+.++++..++++++.+++.+++
T Consensus 110 DTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a 189 (721)
T KOG0465|consen 110 DTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPA 189 (721)
T ss_pred cCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHH
Q psy11896 353 FLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDI 432 (1043)
Q Consensus 353 ~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l 432 (1043)
.+|+|++..+.|+|++|+++.++++|++++|......+||+++.+.+.++|++|+|.|++.|++|+|.||++..++.+++
T Consensus 190 ~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l 269 (721)
T KOG0465|consen 190 VVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQL 269 (721)
T ss_pred eeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc-CcccceeeeCCCCCCCCCcEEEEEeeee
Q psy11896 433 KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN-GQEDKKVVLNPSRDGKHPFIALAFKLEA 511 (1043)
Q Consensus 433 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 511 (1043)
..++|++++.+.|+|||||||++|.||++|||++++|||+|.+..++...+ .+..+++.+.+.++.+ ||++++||+..
T Consensus 270 ~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~-Pfv~LAFKle~ 348 (721)
T KOG0465|consen 270 KAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKD-PFVALAFKLEE 348 (721)
T ss_pred HHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCC-ceeeeEEEeee
Confidence 999999999999999999999999999999999999999999998887763 3333466777664344 99999999999
Q ss_pred cCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccCccccCcEEecCCCCccccc
Q psy11896 512 GKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 512 d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~Gdtl~~~~~~~~~~~ 591 (1043)
+++|.+.|+|||+|+|++||.+||.++++++|+.+|+.||++..++|+++.|||||++.|+|+.+|||++...+....++
T Consensus 349 g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGidcasGDTftd~~~~~~~m~ 428 (721)
T KOG0465|consen 349 GRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDCASGDTFTDKQNLALSME 428 (721)
T ss_pred cCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeeccccccCceeccCccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999993336678889
Q ss_pred CCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCe
Q psy11896 592 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671 (1043)
Q Consensus 592 ~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~ 671 (1043)
.+.+|+||++++|+|.+.+|.++|.+||.++.+|||||+++.|.|++|++|+|||||||||..+||++|||++++++.|+
T Consensus 429 si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~ 508 (721)
T KOG0465|consen 429 SIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKPQ 508 (721)
T ss_pred eeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||+.++++++.||||+||.|||+++...++|++++.+..++|.++++|+.+|++|++++++||.++|++|||+|.
T Consensus 509 VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~gh 588 (721)
T KOG0465|consen 509 VAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGH 588 (721)
T ss_pred eeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCC
Confidence 99999999999999999999999999999999999999987888999999999999999999999999999999999999
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCC
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 831 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~ 831 (1043)
|+.++++.|.||++|.+||
T Consensus 589 pl~~~r~~l~Dga~h~vds------------------------------------------------------------- 607 (721)
T KOG0465|consen 589 PLSNLRIVLQDGAHHPVDS------------------------------------------------------------- 607 (721)
T ss_pred cccceEEEEecCCcCcccc-------------------------------------------------------------
Confidence 9999887777766665554
Q ss_pred CceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCC
Q psy11896 832 DWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS 911 (1043)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~ 911 (1043)
T Consensus 608 -------------------------------------------------------------------------------- 607 (721)
T KOG0465|consen 608 -------------------------------------------------------------------------------- 607 (721)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchH
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAG 991 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~ 991 (1043)
++.+|+.|++.|+++||++|+|+||||||.|+|++|+|++|.|+++|++|+|.|.+.+..++.++|+|.+|+++||||++
T Consensus 608 ~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~~~~ti~A~VPL~~mfgYss 687 (721)
T KOG0465|consen 608 SELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSEDYKTIKAEVPLNEMFGYSS 687 (721)
T ss_pred cHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCCceEEEEecccHHHHhhhhh
Confidence 44456666777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCceEEEeEecccccCCHHHHHHHHHH
Q psy11896 992 DLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNE 1024 (1043)
Q Consensus 992 ~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~ 1024 (1043)
+|||+|+|+|.|+|+|++|+++|.++|++++.+
T Consensus 688 ~LRslTqGkgeftMEys~y~p~~~~vq~~~~~~ 720 (721)
T KOG0465|consen 688 ELRSLTQGKGEFTMEYSRYSPVPPDVQDQLVHK 720 (721)
T ss_pred hhhhhhcCcceEEEeecccCCCchHHHHHhhcc
Confidence 999999999999999999999999999998864
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-134 Score=1196.80 Aligned_cols=686 Identities=48% Similarity=0.765 Sum_probs=644.3
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEcC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDT 274 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDt 274 (1043)
.+++|||+|+||.|||||||+++|++++|.+++.|++++| ++++|++++|++||||+.++.+++.|++ ++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g---~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDT 83 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG---AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDT 83 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC---CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCC
Confidence 6789999999999999999999999999999999999999 6789999999999999999999999996 99999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
|||+||..++.++++++|+||+|+||.+|+++||+.+|+++.++++|+++|+||||+.++++....+++..+|+.++.++
T Consensus 84 PGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 84 PGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPV 163 (697)
T ss_pred CCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
++|++..+.|.|++|++.+.++.|.. |..+...++|++..+...++|..+++.++|.|++++++|+++..++.+++..
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~--~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~ 241 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGD--GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKK 241 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcC--CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHH
Confidence 99999999999999999999999975 5555558899988899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF 514 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~ 514 (1043)
+|++.+..+.++|++||||.+|.|++.|||++++++|+|.+.+.+.....+...+.... +.+.++|++++|||+..|++
T Consensus 242 ~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~-~~~~e~p~~a~vfKi~~d~~ 320 (697)
T COG0480 242 ALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLR-KASDEGPLSALVFKIMTDPF 320 (697)
T ss_pred HHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcc-cCCCCCceEEEEEEeEecCC
Confidence 99999999999999999999999999999999999999998876644432222222222 43478999999999999999
Q ss_pred -ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCcccccC
Q psy11896 515 -GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLES 592 (1043)
Q Consensus 515 -G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~~~ 592 (1043)
|+++|+|||||+|++||.++|.+.+++++|.+|+.++|++++++++++||||+++.|+ ++.+|||++ +.+.+..++.
T Consensus 321 ~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~-~~~~~v~~~~ 399 (697)
T COG0480 321 VGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLC-DENKPVILES 399 (697)
T ss_pred CCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeee-cCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999 778999999 4445678899
Q ss_pred CCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCee
Q psy11896 593 IYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKV 672 (1043)
Q Consensus 593 ~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V 672 (1043)
+.+|+|+++++|+|++++|++||.++|++|++|||++++..|+||||++|+|||||||||+++||+++||+++.+++|+|
T Consensus 400 ~~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV 479 (697)
T COG0480 400 MEFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQV 479 (697)
T ss_pred ccCCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccc
Q psy11896 673 AFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSR 752 (1043)
Q Consensus 673 ~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~p 752 (1043)
+|||||++.++..++|++|+||++||+++++.+||+++ +.++.|.+++.++.+|++|++++++||+|++++|||+|||
T Consensus 480 ~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~--~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~p 557 (697)
T COG0480 480 AYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLED--GSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYP 557 (697)
T ss_pred EEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCC--CcceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCc
Confidence 99999999988889999999999999999999999875 4589999999999999999999999999999999999999
Q ss_pred eeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCC
Q psy11896 753 VAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD 832 (1043)
Q Consensus 753 v~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~ 832 (1043)
|+|++++|.||++|++
T Consensus 558 v~dvkv~L~dgs~h~v---------------------------------------------------------------- 573 (697)
T COG0480 558 VVDVKVTLLDGSYHEV---------------------------------------------------------------- 573 (697)
T ss_pred eEeeEEEEEcCccccC----------------------------------------------------------------
Confidence 9999977777666644
Q ss_pred ceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCC
Q psy11896 833 WVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSN 912 (1043)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~ 912 (1043)
||+
T Consensus 574 -----------------------------------------------------------------------------dss 576 (697)
T COG0480 574 -----------------------------------------------------------------------------DSS 576 (697)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 455
Q ss_pred hhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCC--CcEEEEEEechhhhcCch
Q psy11896 913 EISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD--DWVTIYAEIPLNDMFGFA 990 (1043)
Q Consensus 913 ~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~g~~ 990 (1043)
+++|++|++.||++|+++|+|+||||||.|+|++|++++|+||++|++|||+|++++..+ ++++|+|++|++|||||+
T Consensus 577 ~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya 656 (697)
T COG0480 577 EMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYA 656 (697)
T ss_pred HHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEEEEEechHHhccch
Confidence 667777788888889999999999999999999999999999999999999999999984 479999999999999999
Q ss_pred HHHHhhcCCceEEEeEecccccCCHHHHHHHHHHHHHhcCC
Q psy11896 991 GDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQEATNP 1031 (1043)
Q Consensus 991 ~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1043)
++|||.|||+|+|+|+|+||+++|..++++++.+.|+++|+
T Consensus 657 ~dLRs~T~Gra~~~m~f~~y~~vp~~~a~~ii~~~~~~~~~ 697 (697)
T COG0480 657 TDLRSATQGRASFSMEFDHYEEVPSSVAEEIIAKRRKRKGL 697 (697)
T ss_pred hhhHhhcCCceeEEEEecccEeCCHHHHHHHHHHhhhhcCC
Confidence 99999999999999999999999999999999999999875
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=5.2e-121 Score=1118.65 Aligned_cols=683 Identities=46% Similarity=0.767 Sum_probs=628.3
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+.++||||+|+||+|+|||||+++|++.++.+...+.++++ .+++|+.+.|++||+|+++....+.|++++++|+|
T Consensus 5 ~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liD 81 (693)
T PRK00007 5 TPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFWKDHRINIID 81 (693)
T ss_pred CcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC---cccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEe
Confidence 356789999999999999999999999999988877777777 57899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.+|..++.++++.+|++++|+||.+|++.||+.+|+++.+.++|+++|+||||+.++++.+.++++++.++....+
T Consensus 82 TPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~ 161 (693)
T PRK00007 82 TPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVP 161 (693)
T ss_pred CCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eeeccccCCCeeEEEEcccceeEeec-CCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFE-GPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDI 432 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~-~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l 432 (1043)
.++|+....+|.|++|++....+.|. ...|..+...++|....+.+.++|++|+|.+++.||++|++||++..++.+++
T Consensus 162 ~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l 241 (693)
T PRK00007 162 IQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEI 241 (693)
T ss_pred EEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHH
Confidence 99999999999999999999999995 23466667778898888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc-CcccceeeeCCCCCCCCCcEEEEEeeee
Q psy11896 433 KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN-GQEDKKVVLNPSRDGKHPFIALAFKLEA 511 (1043)
Q Consensus 433 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 511 (1043)
+.++++++..+.++|||||||++|.|++.|||+|++++|+|.+++...... ..........|+ +++|++++|||+.+
T Consensus 242 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~a~VfK~~~ 319 (693)
T PRK00007 242 KAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKAS--DDEPFSALAFKIMT 319 (693)
T ss_pred HHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCC--CCCCeEEEEEEeee
Confidence 999999999999999999999999999999999999999998765432110 111134456777 89999999999999
Q ss_pred cCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccc
Q psy11896 512 GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSIS 589 (1043)
Q Consensus 512 d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~ 589 (1043)
|++ |+++|+|||||+|++||.|++.+++++++|.+||.++|++..+++++.|||||++.|+ ++.+||||+ +...+..
T Consensus 320 d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~-~~~~~~~ 398 (693)
T PRK00007 320 DPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLC-DEKNPII 398 (693)
T ss_pred cCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEee-CCCCccc
Confidence 998 9999999999999999999999888889999999999999999999999999999999 788999998 5555667
Q ss_pred ccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecC
Q psy11896 590 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669 (1043)
Q Consensus 590 ~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~ 669 (1043)
++++.+|+|+++++|+|.++.|.++|.++|++|.+|||++++.+|++|||++|+|+||||||++++||+++|++++++++
T Consensus 399 l~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~ 478 (693)
T PRK00007 399 LESMEFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGK 478 (693)
T ss_pred cCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecC
Confidence 77888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcc
Q psy11896 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLS 749 (1043)
Q Consensus 670 p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~ 749 (1043)
|+|+|||||+++++..++|++|+||++||++++++++|++. +.++.|.++++++.+|++|+++|++||+|++.+|||+
T Consensus 479 p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~--~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~ 556 (693)
T PRK00007 479 PQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEP--GKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLA 556 (693)
T ss_pred CEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCC--CCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcC
Confidence 99999999999988888999999999999999999999875 5678999999999999999999988888888887777
Q ss_pred ccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCC
Q psy11896 750 GSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 829 (1043)
Q Consensus 750 g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~ 829 (1043)
|+||+||+|+|.||++
T Consensus 557 g~pv~~v~v~l~d~~~---------------------------------------------------------------- 572 (693)
T PRK00007 557 GYPVVDVKVTLFDGSY---------------------------------------------------------------- 572 (693)
T ss_pred CCceeeEEEEEEeccc----------------------------------------------------------------
Confidence 7777777766665554
Q ss_pred CCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccC
Q psy11896 830 KDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMV 909 (1043)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~ 909 (1043)
|++
T Consensus 573 -----------------------------------------------------------------------------~~~ 575 (693)
T PRK00007 573 -----------------------------------------------------------------------------HDV 575 (693)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 444
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCc
Q psy11896 910 DSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGF 989 (1043)
Q Consensus 910 ~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~ 989 (1043)
|+++++|+.|+++||++|+++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.+.|+|.+|++|+|||
T Consensus 576 ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~i~a~vP~~e~~g~ 655 (693)
T PRK00007 576 DSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGGAKVIRAEVPLSEMFGY 655 (693)
T ss_pred CCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccCCcEEEEEEcCHHHhhcc
Confidence 55666778889999999999999999999999999999999999999999999999999987788999999999999999
Q ss_pred hHHHHhhcCCceEEEeEecccccCCHHHHHHHHHHH
Q psy11896 990 AGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEY 1025 (1043)
Q Consensus 990 ~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~ 1025 (1043)
+++||++|+|+|+|+|.|+||+++|++++++++.++
T Consensus 656 ~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~ 691 (693)
T PRK00007 656 ATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKR 691 (693)
T ss_pred HHHHHhhcCCceEEEEEeceeeECCHHHHHHHHHHh
Confidence 999999999999999999999999999999999764
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=2e-120 Score=1114.77 Aligned_cols=682 Identities=46% Similarity=0.762 Sum_probs=629.6
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
+.++||||+|+||+|+|||||+++|++.++.+.+.+.++++ .+++|+++.|++||+|++.....+.|++++++||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDT 80 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFWKGHRINIIDT 80 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC---ccccCCChhHhhcCCCccceeEEEEECCEEEEEEcC
Confidence 45679999999999999999999999999988877777776 568999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
|||.+|..++.++++.+|++++|+|+.+|++.||+.+|+++.+.++|+++|+||||+.+++..+.++++++.++....+.
T Consensus 81 PG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 160 (691)
T PRK12739 81 PGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPI 160 (691)
T ss_pred CCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999988899
Q ss_pred eeccccCCCeeEEEEcccceeEeecC-CCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEG-PLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
++|+....+|.|++|++.+..+.|.. ..|..+...++|.++.+++.++|++|+|.+++.||+++++||++..++.++++
T Consensus 161 ~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~ 240 (691)
T PRK12739 161 QLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIK 240 (691)
T ss_pred EecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999988853 24566677889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecC
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK 513 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~ 513 (1043)
.++++++..+.++||+||||.+|.|++.|||+|++++|+|.+++..+.............|+ +++|++++|||+++|+
T Consensus 241 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~--~~~pl~a~VfK~~~d~ 318 (691)
T PRK12739 241 AAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPAS--DDEPFAALAFKIMTDP 318 (691)
T ss_pred HHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccC--CCCCeEEEEEEeeeCC
Confidence 99999999999999999999999999999999999999998765544322122234567777 8999999999999999
Q ss_pred C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccccc
Q psy11896 514 F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 514 ~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~~ 591 (1043)
+ |+++|+|||||+|++||.|++.++++++++.+||.++|++..++++++||||++|.|+ ++++||||+ +...+..++
T Consensus 319 ~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~-~~~~~~~l~ 397 (691)
T PRK12739 319 FVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLC-DEKAPIILE 397 (691)
T ss_pred CCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEe-CCCCccccC
Confidence 8 9999999999999999999999888899999999999999999999999999999999 789999998 455566778
Q ss_pred CCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCe
Q psy11896 592 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671 (1043)
Q Consensus 592 ~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~ 671 (1043)
++.+|+|+++++|+|.+++|+++|.++|++|.++||+|++.+|++|||++|+|+||||||++++||+++|++++++++|.
T Consensus 398 ~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~ 477 (691)
T PRK12739 398 SMEFPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQ 477 (691)
T ss_pred CCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCE
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||++.++..++|++|+||++||++++++++|++. +.++.|.+++.++.+|++|+++|++||+|++.+|||+|+
T Consensus 478 V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~--~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~ 555 (691)
T PRK12739 478 VAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEE--GKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGY 555 (691)
T ss_pred EEEeeccCCcccccceeccccCCCCceeEEEEEEEECCC--CCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCC
Confidence 999999999988889999999999999999999999875 468999999999999999999998888888888777777
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCC
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 831 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~ 831 (1043)
||+||+|+|.||++|
T Consensus 556 pv~~v~v~l~d~~~h----------------------------------------------------------------- 570 (691)
T PRK12739 556 PMVDVKATLYDGSYH----------------------------------------------------------------- 570 (691)
T ss_pred ceeeEEEEEEEeccC-----------------------------------------------------------------
Confidence 777777666665544
Q ss_pred CceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCC
Q psy11896 832 DWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS 911 (1043)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~ 911 (1043)
++|+
T Consensus 571 ----------------------------------------------------------------------------~~~s 574 (691)
T PRK12739 571 ----------------------------------------------------------------------------DVDS 574 (691)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 4455
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchH
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAG 991 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~ 991 (1043)
+.++|.+|+++||++||++|.|+||||||.|+|+||++++|+||++|++|||+|++++..++++.|+|++|++|+|||++
T Consensus 575 ~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~i~a~vP~~e~~g~~~ 654 (691)
T PRK12739 575 SELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQIVKAFVPLSEMFGYAT 654 (691)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCCcEEEEEEeCHHHhhccHH
Confidence 56677788999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHhhcCCceEEEeEecccccCCHHHHHHHHHHH
Q psy11896 992 DLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEY 1025 (1043)
Q Consensus 992 ~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~ 1025 (1043)
+||++|+|+|+|+|.|+||+++|++++++++++.
T Consensus 655 ~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~ii~~~ 688 (691)
T PRK12739 655 DLRSATQGRATFSMEFDHYEEVPKNIAEEIIKKR 688 (691)
T ss_pred HHHhhccCceEEEEEeccceECCHHHHHHHHHHh
Confidence 9999999999999999999999999999999654
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=6.4e-120 Score=1111.44 Aligned_cols=682 Identities=47% Similarity=0.774 Sum_probs=630.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+.++||||+|+||+|+|||||+++|++.++.+...+.++++ .+++|+.+.|++||+|++.....+.|++++++|||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g---~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liD 81 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDG---AATMDWMEQEKERGITITSAATTVFWKGHRINIID 81 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC---ccccCCCHHHHhcCCCEecceEEEEECCeEEEEEE
Confidence 456789999999999999999999999999988877777766 47899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.+|..++.++++.+|++++|+|+.+|+..++..+|+++.+.++|+++|+||+|+.++++.+.++++++.++....+
T Consensus 82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVP 161 (689)
T ss_pred CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
.++|+....++.|++|++.+..++|+...+......++|+++.+.+.++|++|+|.+++.||++|++|+++..++.+++.
T Consensus 162 ~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~ 241 (689)
T TIGR00484 162 IQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIK 241 (689)
T ss_pred EEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999999999999998777777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecC
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK 513 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~ 513 (1043)
.++++++..+.++|||+|||.+|.|++.|||+|++++|+|.+++................|+ +++|++++|||+.+|+
T Consensus 242 ~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~--~~~~l~a~VfK~~~d~ 319 (689)
T TIGR00484 242 NAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKAS--DDEPFSALAFKVATDP 319 (689)
T ss_pred HHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCC--CCCceEEEEEEeeecC
Confidence 99999999999999999999999999999999999999998754432211111234456776 8999999999999999
Q ss_pred C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccccc
Q psy11896 514 F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 514 ~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~~ 591 (1043)
+ |+++|+|||||+|+.||.|++.+.++++++.+|+.++|++..++++++|||||++.|+ ++.+||||+ +...+..++
T Consensus 320 ~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~-~~~~~~~~~ 398 (689)
T TIGR00484 320 FVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLC-DPKIDVILE 398 (689)
T ss_pred CCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEe-CCCCccccC
Confidence 8 9999999999999999999999888889999999999999999999999999999999 788999998 555566778
Q ss_pred CCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCe
Q psy11896 592 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671 (1043)
Q Consensus 592 ~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~ 671 (1043)
++.+|+|+++++|+|.++.|.++|.++|++|.++||+|++.+|++|||++|+||||||||++++||+++||+++++++|.
T Consensus 399 ~~~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~ 478 (689)
T TIGR00484 399 RMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQ 478 (689)
T ss_pred CCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCE
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||+++++..++|++|+||++||++++++++|++. ++++|.+++.++.+|++|+++|++||+|++.+|||+|+
T Consensus 479 V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~---~g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~ 555 (689)
T TIGR00484 479 VAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEP---KGYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGY 555 (689)
T ss_pred EEEeecccCccccccccccccCCCCceEEEEEEEEECCC---CCcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCC
Confidence 999999999988889999999999999999999999875 48899999999999999999999888888888888887
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCC
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 831 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~ 831 (1043)
||+||+|+|.|+++|
T Consensus 556 pv~~v~v~l~~~~~~----------------------------------------------------------------- 570 (689)
T TIGR00484 556 PVVDIKATLFDGSYH----------------------------------------------------------------- 570 (689)
T ss_pred ceeeEEEEEEEeecC-----------------------------------------------------------------
Confidence 777777666665554
Q ss_pred CceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCC
Q psy11896 832 DWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS 911 (1043)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~ 911 (1043)
++|+
T Consensus 571 ----------------------------------------------------------------------------~~~s 574 (689)
T TIGR00484 571 ----------------------------------------------------------------------------DVDS 574 (689)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 4455
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchH
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAG 991 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~ 991 (1043)
+.++|++|+++||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.+.|+|++|++|+|||++
T Consensus 575 ~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~g~~~ 654 (689)
T TIGR00484 575 SEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNVQKIKAEVPLSEMFGYAT 654 (689)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccCCcEEEEEEeCHHHHhChHH
Confidence 55667788899999999999999999999999999999999999999999999999998778999999999999999999
Q ss_pred HHHhhcCCceEEEeEecccccCCHHHHHHHHHHH
Q psy11896 992 DLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEY 1025 (1043)
Q Consensus 992 ~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~ 1025 (1043)
+||++|+|+|+|+|.|+||+++|++++++||++.
T Consensus 655 ~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~ 688 (689)
T TIGR00484 655 DLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEKR 688 (689)
T ss_pred HHHHhcCCceEEEEEeccceeCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999653
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=3.1e-116 Score=1082.63 Aligned_cols=679 Identities=43% Similarity=0.716 Sum_probs=623.3
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
+.+++|||+|+||.|+|||||+++|++.++.+.+.+.++.+ .+++|+.+.|+++|+|+......+.|+++.+++|||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~---~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDt 80 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDG---TTVTDWMPQEQERGITIESAATSCDWDNHRINLIDT 80 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCC---cccCCCCHHHHhcCCCcccceEEEEECCEEEEEEEC
Confidence 55679999999999999999999999999988887777776 457899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
|||.+|..++..+++.+|++++|+|+.+|...++..+|+.+...++|+++|+||+|+.++++.+.++++++.++..+.++
T Consensus 81 PG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 160 (687)
T PRK13351 81 PGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPL 160 (687)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCeeEEEEcccceeEeecCC-CCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGP-LGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~-~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
++|+..+..|.|++|++.+..+.|... .+..+...++|+.+.+.+.++|.+|+|.+++.||+++++|+++..++.++++
T Consensus 161 ~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~ 240 (687)
T PRK13351 161 QLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLR 240 (687)
T ss_pred EeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 999999999999999999999999643 3556677789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecC
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK 513 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~ 513 (1043)
.++++++..+.++|||||||++|.|++.|||+|++++|+|.+++..+... .........|+ +++|++++|||+.+++
T Consensus 241 ~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~-~~~~~~~~~~~--~~~pl~a~VfK~~~d~ 317 (687)
T PRK13351 241 APLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK-DNGKPVKVDPD--PEKPLLALVFKVQYDP 317 (687)
T ss_pred HHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC-CCCCceeecCC--CCCCeEEEEEEeeecC
Confidence 99999999999999999999999999999999999999998765443322 11112345666 8899999999999999
Q ss_pred C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccccc
Q psy11896 514 F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 514 ~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~~ 591 (1043)
+ |+++|+|||||+|++||+|++.+.++.+++.+||.++|++..+++++.||||+++.|+ ++.+||||+ +...+..++
T Consensus 318 ~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~-~~~~~~~~~ 396 (687)
T PRK13351 318 YAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLH-DSADPVLLE 396 (687)
T ss_pred CCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEe-CCCCccccC
Confidence 8 9999999999999999999999988899999999999999999999999999999999 788999998 444456677
Q ss_pred CCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCe
Q psy11896 592 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671 (1043)
Q Consensus 592 ~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~ 671 (1043)
++.+|+|+++++|+|.+++|.++|.++|++|.+|||+|++.++++|||++|+|+||||||++++||+++|++++++++|.
T Consensus 397 ~~~~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~ 476 (687)
T PRK13351 397 LLTFPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQ 476 (687)
T ss_pred CCCCCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCe
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||++.++..++|++++|+++||++++++++|++. +.++.|.+.++++.+|++|+++|++||+|++++|||+|+
T Consensus 477 V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~--~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~ 554 (687)
T PRK13351 477 VAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLER--GAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGY 554 (687)
T ss_pred EEEEeeccccccccceeeeccCCCceEEEEEEEEEECCC--CCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999988888999999999999999999999875 456999999999999999999998888888777777777
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCC
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 831 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~ 831 (1043)
||+||+|+|.|++
T Consensus 555 pv~~v~v~l~~~~------------------------------------------------------------------- 567 (687)
T PRK13351 555 PVTDLRVTVLDGK------------------------------------------------------------------- 567 (687)
T ss_pred ceeeEEEEEEEec-------------------------------------------------------------------
Confidence 7777775555554
Q ss_pred CceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCC
Q psy11896 832 DWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS 911 (1043)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~ 911 (1043)
+|++++
T Consensus 568 --------------------------------------------------------------------------~~~~~s 573 (687)
T PRK13351 568 --------------------------------------------------------------------------YHPVDS 573 (687)
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 444556
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEE-EEEEechhhhcCch
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVT-IYAEIPLNDMFGFA 990 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~-i~a~~P~~e~~g~~ 990 (1043)
+.++|++|++.||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++... |+|++|++|+|||+
T Consensus 574 ~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~a~vP~~e~~~~~ 653 (687)
T PRK13351 574 SESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAEAPLAELFGYA 653 (687)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcEEEEEEEECHHHhhChH
Confidence 67788899999999999999999999999999999999999999999999999999998766555 99999999999999
Q ss_pred HHHHhhcCCceEEEeEecccccCCHHHHHHHHH
Q psy11896 991 GDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVN 1023 (1043)
Q Consensus 991 ~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~ 1023 (1043)
++||++|+|+|+|+|+|+||+++|++++++++-
T Consensus 654 ~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 686 (687)
T PRK13351 654 TRLRSMTKGRGSFTMEFSHFDPVPPAVQKKVGS 686 (687)
T ss_pred HHHHhhcCCceEEEEEeccceeCCHHHHHHHhc
Confidence 999999999999999999999999999998873
No 7
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=6.3e-110 Score=1025.99 Aligned_cols=665 Identities=47% Similarity=0.757 Sum_probs=609.9
Q ss_pred EEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchHHH
Q psy11896 205 SAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV 284 (1043)
Q Consensus 205 vG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~ 284 (1043)
+||+|+|||||+++|++.++.+.+.+.++++ .+++|+++.|++||+|+......+.|+++.+++||||||.+|..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~---~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDG---TTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCC---cccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHH
Confidence 5999999999999999999998887777776 3689999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeeccccCCCe
Q psy11896 285 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSET 364 (1043)
Q Consensus 285 ~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~ 364 (1043)
..+++.+|++++|+|+..+...++..+|+.+...++|+++|+||+|+...+..+.++++++.++....+.++|+..+..+
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999998998999999999999999999999999999
Q ss_pred eEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCc
Q psy11896 365 KGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK 444 (1043)
Q Consensus 365 ~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~ 444 (1043)
.|++|++.+..++|+ .|..+...++|+...+.+.++|..|+|.+++.|++++++|+++..++.+++...++++++.+.
T Consensus 158 ~~~id~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~ 235 (668)
T PRK12740 158 TGVVDLLSMKAYRYD--EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGE 235 (668)
T ss_pred eEEEECccceEEEec--CCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999998 466667778888888899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEe
Q psy11896 445 FTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCY 523 (1043)
Q Consensus 445 ~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~ 523 (1043)
++|||+|||++|.|++.|||+|+.++|+|.+++.+... .........|+ +++|++++|||++++++ |+++|+|||
T Consensus 236 ~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~--~~~~~~~~~~~--~~~~l~a~v~k~~~~~~~G~i~~~RV~ 311 (668)
T PRK12740 236 IVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGE--DGEEGAELAPD--PDGPLVALVFKTMDDPFVGKLSLVRVY 311 (668)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHCCChhhcccccCC--CCccccccccC--CCCCeEEEEEEeeecCCCCcEEEEEEe
Confidence 99999999999999999999999999999765432110 11112334566 88999999999999998 999999999
Q ss_pred cCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCcccccCCCCCCceEEE
Q psy11896 524 QGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSM 602 (1043)
Q Consensus 524 sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~pv~~~ 602 (1043)
||+|++||+|++.++++++++.+|+.++|++.++++++.||||+++.|+ ++.+||||+ +...+..++++.+++|++++
T Consensus 312 sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~-~~~~~~~~~~~~~~~P~~~~ 390 (668)
T PRK12740 312 SGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLC-DKGDPILLEPMEFPEPVISL 390 (668)
T ss_pred eeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEe-CCCCccccCCCCCCCcceEE
Confidence 9999999999999888889999999999999999999999999999999 788999998 45556677888899999999
Q ss_pred EEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCeeeEEEeeeccc
Q psy11896 603 SIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPF 682 (1043)
Q Consensus 603 ~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V~yrEti~~~~ 682 (1043)
+|+|.+++|.++|.++|++|.++||++++..+++|||++|+|+||||||++++||+++|++++.+++|.|+|||||.+++
T Consensus 391 ~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~ 470 (668)
T PRK12740 391 AIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKA 470 (668)
T ss_pred EEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeec
Q psy11896 683 DFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKD 762 (1043)
Q Consensus 683 ~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d 762 (1043)
+..++|++++||++||++++++++|++. +.++.|.+++.++.+|++|+++|++||++++.+|||+|+||+||+|+|.+
T Consensus 471 ~~~~~~~~~~~~~~~~~~v~l~~ep~~~--~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~ 548 (668)
T PRK12740 471 EGHGRHKKQSGGHGQFGDVWLEVEPLPR--GEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTD 548 (668)
T ss_pred cccceeccccCCCCceEEEEEEEEECCC--CCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEe
Confidence 8889999999999999999999999875 46789999999999999888888887777777777666666666655555
Q ss_pred CCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhc
Q psy11896 763 GDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCE 842 (1043)
Q Consensus 763 ~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~ 842 (1043)
+
T Consensus 549 ~------------------------------------------------------------------------------- 549 (668)
T PRK12740 549 G------------------------------------------------------------------------------- 549 (668)
T ss_pred c-------------------------------------------------------------------------------
Confidence 4
Q ss_pred ccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHH
Q psy11896 843 KGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 922 (1043)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 922 (1043)
.+|++++++++|++|+++
T Consensus 550 --------------------------------------------------------------~~~~~~s~~~~~~~a~~~ 567 (668)
T PRK12740 550 --------------------------------------------------------------SYHSVDSSEMAFKIAARL 567 (668)
T ss_pred --------------------------------------------------------------ccccCCCCHHHHHHHHHH
Confidence 445556666778899999
Q ss_pred HHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceE
Q psy11896 923 AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGE 1002 (1043)
Q Consensus 923 a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~ 1002 (1043)
||++|+++|.|+||||||.|+|+||++++|+||++|++|||+|++++..++.+.|+|++|++|+|||+++||++|+|+|+
T Consensus 568 a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~ 647 (668)
T PRK12740 568 AFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEMFGYATDLRSLTQGRGS 647 (668)
T ss_pred HHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCCEEEEEEcCHHHhhchHHHHHHhcCCeEE
Confidence 99999999999999999999999999999999999999999999999876669999999999999999999999999999
Q ss_pred EEeEecccccCCHHHHHHHH
Q psy11896 1003 FSMDYSRYSPALPEVQDRLV 1022 (1043)
Q Consensus 1003 ~~~~f~~~~~~~~~~~~~~~ 1022 (1043)
|++.|+||+++|++++++++
T Consensus 648 ~~~~f~~y~~~~~~~~~~~~ 667 (668)
T PRK12740 648 FSMEFSHYEEVPGNVAEKVI 667 (668)
T ss_pred EEEEecccccCCHHHHHHHh
Confidence 99999999999999998876
No 8
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=3.2e-111 Score=1045.00 Aligned_cols=716 Identities=25% Similarity=0.397 Sum_probs=590.5
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---------
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--------- 265 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------- 265 (1043)
+.+++|||+++||+|||||||+++|++.++.+.+. ..| .++++|+++.|++||+|++++...+.|.
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~---~~g--~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~ 89 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK---NAG--DARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDK 89 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc---cCC--ceeecccchhhHhhcceeeccceEEEeecccccccCC
Confidence 45779999999999999999999999999887653 222 1457999999999999999998888886
Q ss_pred -CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC----C-------
Q psy11896 266 -DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL----G------- 333 (1043)
Q Consensus 266 -~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~------- 333 (1043)
++.++|+|||||.||..++.++++.+|+||+|+|+.+|++.||+.+|+++...++|+++|+||||+. +
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~ 169 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIY 169 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CCHHHHHHHHHHHhC-----------CCceeeeeccccCCC--------eeE--------EEEcccceeE---eecCCCC
Q psy11896 334 ADPYRVINQMRQKVG-----------HNAAFLQIPIGLGSE--------TKG--------IIDLIQRKAI---YFEGPLG 383 (1043)
Q Consensus 334 ~~~~~~~~~i~~~l~-----------~~~~~~~~p~~~~~~--------~~g--------~~dl~~~~~~---~~~~~~g 383 (1043)
+++..++++++..++ ..+.+.++|++++.. |.| .++.+....| +|++ .+
T Consensus 170 ~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~-~~ 248 (836)
T PTZ00416 170 QNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDA-KT 248 (836)
T ss_pred HHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccC-CC
Confidence 567788888887765 256677888876541 222 2233333333 4543 24
Q ss_pred CeeEeec-------CchhHHHHHHHHHHHHHHHHhcCChHHHHHHhc--cCCCCHHHH--HH-HHHHhhhcCccEEEEEe
Q psy11896 384 DNLRIEE-------IPADLKKEAESKRQELIEHVAEGDEILGEMFLE--EKSISEDDI--KK-AIRRSTLTRKFTPVLVG 451 (1043)
Q Consensus 384 ~~~~~~~-------i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~--~~~~~~~~l--~~-~l~~~~~~~~~~Pv~~g 451 (1043)
..+...+ +|..+.+.+.++|.+|++.+++.||+++++|++ +.+++.+++ .. .+.+++. +.|+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv--- 324 (836)
T PTZ00416 249 KKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA--- 324 (836)
T ss_pred CEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch---
Confidence 4333332 456788999999999999999999999999999 667888774 33 5667766 899998
Q ss_pred eccCCCCHHHHHHHHHHhCCCCCCCCcccccc------CcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc-EEEEEEe
Q psy11896 452 TALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ-LTYMRCY 523 (1043)
Q Consensus 452 Sa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~-i~~~RV~ 523 (1043)
++.|||+|++++|+|.+++..+... .+........|+ +++|++++|||+.++++ |+ ++|+|||
T Consensus 325 -------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~plva~VfK~~~~~~~g~~~s~~RV~ 395 (836)
T PTZ00416 325 -------ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCD--PNGPLMMYISKMVPTSDKGRFYAFGRVF 395 (836)
T ss_pred -------HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccC--CCCCeEEEEEeeeecCCCCcEEEEEEEE
Confidence 7999999999999998765433211 111223466777 89999999999999987 87 8999999
Q ss_pred cCeecCCCEEEe----cCCCcEE-----EeceEEEeccCCeeecCeecCCCEEEEccC-c--cccCcEEecCCCCccccc
Q psy11896 524 QGKLRKGEMIYN----VRTDKKV-----RVSRLVRLHSNEMEDVEEVLAGDIFALFGV-D--CASGDTFVTDKNNSISLE 591 (1043)
Q Consensus 524 sGtl~~gd~v~~----~~~~~~~-----ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~--~~~Gdtl~~~~~~~~~~~ 591 (1043)
||+|+.||.|++ .+.+.++ +|.+||.++|++..++++|+|||||+|.|+ + +++| ||+ +...+..+.
T Consensus 396 SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~-~~~~~~~l~ 473 (836)
T PTZ00416 396 SGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TIT-TSETAHNIR 473 (836)
T ss_pred eeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eec-CCCCccccc
Confidence 999999999994 4433344 599999999999999999999999999999 4 6899 998 455566777
Q ss_pred CCCCC-CceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-CccEEecC
Q psy11896 592 SIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGK 669 (1043)
Q Consensus 592 ~~~~~-~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~v~i~~~~ 669 (1043)
++.++ +|+++++|||.+++|+++|.++|++|.+|||++++.. ++|||++|+||||+|||+|++||+++| ++++++++
T Consensus 474 ~i~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~ 552 (836)
T PTZ00416 474 DMKYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSD 552 (836)
T ss_pred ccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecC
Confidence 78775 9999999999999999999999999999999999865 899999999999999999999999999 99999999
Q ss_pred CeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcc
Q psy11896 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLS 749 (1043)
Q Consensus 670 p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~ 749 (1043)
|.|+|||||+++++..+++++++|+ .+++++++|++++ ..+.++. |-+.
T Consensus 553 P~V~yrETI~~~s~~~~~~~~~~~~----~~v~~~~ePl~~~-------------------~~~~~~~--------~~~~ 601 (836)
T PTZ00416 553 PVVSYRETVTEESSQTCLSKSPNKH----NRLYMKAEPLTEE-------------------LAEAIEE--------GKVG 601 (836)
T ss_pred CEEEEEEEecccccceEEEECCCCC----eeEEEEEEECCHH-------------------HHhHhhc--------Cccc
Confidence 9999999999999999999999765 4999999998641 1111111 1000
Q ss_pred ccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCC
Q psy11896 750 GSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 829 (1043)
Q Consensus 750 g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~ 829 (1043)
+. . .... ++.+.. .
T Consensus 602 ------~~----~------~~~~------------------------------------------------~~~~~~--~ 615 (836)
T PTZ00416 602 ------PE----D------DPKE------------------------------------------------RANFLA--D 615 (836)
T ss_pred ------cc----c------chhH------------------------------------------------HHhhhh--c
Confidence 00 0 0000 000000 0
Q ss_pred CCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCcccc-
Q psy11896 830 KDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM- 908 (1043)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~- 908 (1043)
...|.. ...+++|+|++...|+|+++++..+... ...+. ..+..||+||+.+||||+|||+||+|+|+++.+|+
T Consensus 616 ~~~~~~---~~~~~i~~f~~~~~g~nil~~~~~~~~~-~~~~~-~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~ 690 (836)
T PTZ00416 616 KYEWDK---NDARKIWCFGPENKGPNVLVDVTKGVQY-MNEIK-DSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHAD 690 (836)
T ss_pred ccCcch---hhhhCeeeccCCCCCCcEEEecCCcccc-hHHHH-HHHHHHHHHHHhcCcccCCcccceEEEEEEeecccc
Confidence 011321 1235689999999999999987664211 01111 26889999999999999999999999999999998
Q ss_pred -CCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCC--cEEEEEEechhh
Q psy11896 909 -VDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYAEIPLND 985 (1043)
Q Consensus 909 -~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e 985 (1043)
+++++++|++|+++||++||++|+||||||||.|+|+||++++|+||++|++|||+|+++++.++ +++|+|++|++|
T Consensus 691 ~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e 770 (836)
T PTZ00416 691 AIHRGAGQIIPTARRVFYACELTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAE 770 (836)
T ss_pred ccccchHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHH
Confidence 77889999999999999999999999999999999999999999999999999999999998766 489999999999
Q ss_pred hcCchHHHHhhcCCceEEEeEecccccCCHHH------HHHHHHHHHHhcCCchH
Q psy11896 986 MFGFAGDLRSSTQGKGEFSMDYSRYSPALPEV------QDRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 986 ~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 1034 (1043)
+|||+++||++|||+|+|+|+|+||+++|+|+ +.++|.+.|+||||.++
T Consensus 771 ~~gy~~~LRs~T~G~g~~~~~F~~y~~vp~dp~~~~~~a~~~~~~~R~rKGl~~~ 825 (836)
T PTZ00416 771 SFGFTAALRAATSGQAFPQCVFDHWQVVPGDPLEPGSKANEIVLSIRKRKGLKPE 825 (836)
T ss_pred hcCCCHHHHhhCcCCceEEEEeccEEECCCCCCCchhHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999998764 67899999999999754
No 9
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=2.7e-110 Score=1039.30 Aligned_cols=712 Identities=23% Similarity=0.355 Sum_probs=569.5
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--------
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-------- 265 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------- 265 (1043)
..+++||||+|+||+|||||||+++|++.++.+.+. ..++ ++++|++++|++||+|++++..++.|.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGD---VRMTDTRADEAERGITIKSTGISLYYEMTDESLKD 88 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCc---eeeccCcHHHHHhCCceecceeEEEeecccccccc
Confidence 456789999999999999999999999999987762 3333 567999999999999999999999884
Q ss_pred --------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC-----
Q psy11896 266 --------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL----- 332 (1043)
Q Consensus 266 --------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----- 332 (1043)
++.+||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++...++|+++|+||||+.
T Consensus 89 ~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~ 168 (843)
T PLN00116 89 FKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 168 (843)
T ss_pred cccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhc
Confidence 6889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --C----CCHHHHHHHHHH---HhCCC-ceeeee-ccc----cCCCeeEEEEcccceeE---------------------
Q psy11896 333 --G----ADPYRVINQMRQ---KVGHN-AAFLQI-PIG----LGSETKGIIDLIQRKAI--------------------- 376 (1043)
Q Consensus 333 --~----~~~~~~~~~i~~---~l~~~-~~~~~~-p~~----~~~~~~g~~dl~~~~~~--------------------- 376 (1043)
. +++.+++++++. .++.. ..+.++ |.. +++.+.||.+.+...+.
T Consensus 169 ~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~ 248 (843)
T PLN00116 169 VDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 248 (843)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccc
Confidence 2 456777777772 22211 112333 443 36777888888775542
Q ss_pred eecCCCCCeeEeec--Cc---hhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--CCCCHHHHHHHHHHhhhcCccEEEE
Q psy11896 377 YFEGPLGDNLRIEE--IP---ADLKKEAESKRQELIEHVAEGDEILGEMFLEE--KSISEDDIKKAIRRSTLTRKFTPVL 449 (1043)
Q Consensus 377 ~~~~~~g~~~~~~~--i~---~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~ 449 (1043)
+|++ .+..+...+ .| ..+.+.+.+++.+|++.+++.|++++++|+++ ..++.++++. +++++....+.|+|
T Consensus 249 ~~~~-~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~ 326 (843)
T PLN00116 249 FFDP-ATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWL 326 (843)
T ss_pred eEcC-CCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhc
Confidence 3432 233333333 32 23455667799999999999999999999987 5799999987 99999999999999
Q ss_pred EeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc------CcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc-EEEEE
Q psy11896 450 VGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ-LTYMR 521 (1043)
Q Consensus 450 ~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~-i~~~R 521 (1043)
++| +.|||+|++++|+|.+++..+... ..........|+ +++|++++|||+.++++ |+ ++|+|
T Consensus 327 ~~s-------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~pl~a~VfK~~~~~~~g~~l~~~R 397 (843)
T PLN00116 327 PAS-------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCD--PNGPLMLYVSKMIPASDKGRFFAFGR 397 (843)
T ss_pred CCh-------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCC--CCCCeEEEEEeeeecCCCCeEEEEEE
Confidence 976 899999999999998765443321 122224567777 88999999999998877 76 99999
Q ss_pred EecCeecCCCEEE----ecCCCcE-----EEeceEEEeccCCeeecCeecCCCEEEEccC-ccc-cCcEEecCCC--Ccc
Q psy11896 522 CYQGKLRKGEMIY----NVRTDKK-----VRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCA-SGDTFVTDKN--NSI 588 (1043)
Q Consensus 522 V~sGtl~~gd~v~----~~~~~~~-----~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~-~Gdtl~~~~~--~~~ 588 (1043)
||||+|+.||.|+ |...+++ +++.+||.++|++.+++++++|||||++.|+ ++. +||||+ +.. .+.
T Consensus 398 VysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~-~~~~~~~~ 476 (843)
T PLN00116 398 VFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLT-NEKEVDAH 476 (843)
T ss_pred EEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceec-CCcccCCc
Confidence 9999999999998 4433333 5899999999999999999999999999999 444 499998 444 456
Q ss_pred cccCCCCC-CceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc--CccE
Q psy11896 589 SLESIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY--NCPV 665 (1043)
Q Consensus 589 ~~~~~~~~-~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~--~v~i 665 (1043)
.++++.+| +|+++++|||.+++|+++|.+||++|.+|||+|++. +++|||++|+||||+|||++++||+++| |+++
T Consensus 477 ~l~~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~etge~il~g~GElHLEi~~~rL~~~f~~~vev 555 (843)
T PLN00116 477 PIKAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCT-IEESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 555 (843)
T ss_pred cccccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEE-EcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcE
Confidence 67788888 999999999999999999999999999999999986 4999999999999999999999999999 9999
Q ss_pred EecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHH---
Q psy11896 666 VLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQM--- 742 (1043)
Q Consensus 666 ~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~--- 742 (1043)
++++|+|+|||||.++++..++++ + .++|++++++++|++++.-..++ .+.+....-++.....+..++.|.
T Consensus 556 ~~s~p~V~yrETI~~~~~~~~~~~-~---~~~~~~v~l~iePl~~~~~~~ie-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 630 (843)
T PLN00116 556 KVSDPVVSFRETVLEKSCRTVMSK-S---PNKHNRLYMEARPLEEGLAEAID-DGRIGPRDDPKIRSKILAEEFGWDKDL 630 (843)
T ss_pred EEcCCeEEEEecccccccCcEEEe-c---CCceEEEEEEEEECCHHHHHHHH-cCCcccCcchHHHHHHhhhhcCcchhh
Confidence 999999999999999887766643 4 56889999999998753100000 000000000000001111111110
Q ss_pred ----HHcCCccc--cceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhh
Q psy11896 743 ----CEKGCLSG--SRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816 (1043)
Q Consensus 743 ----~~~G~l~g--~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~ 816 (1043)
..-||-.. ....+-. .| .++... +
T Consensus 631 ~~~i~~~gp~~~~~~~~~~~~----~g---------~~~~~~----i--------------------------------- 660 (843)
T PLN00116 631 AKKIWCFGPETTGPNMVVDMC----KG---------VQYLNE----I--------------------------------- 660 (843)
T ss_pred hcCeeeecCCCCCceEEEECC----cc---------hhhHHH----H---------------------------------
Confidence 01133221 2211100 00 000000 0
Q ss_pred hhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccc
Q psy11896 817 VTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAG 896 (1043)
Q Consensus 817 l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~ 896 (1043)
...+..||+|||++||||+|||+|
T Consensus 661 --------------------------------------------------------~~ai~~G~~~a~~~GpL~g~Pv~~ 684 (843)
T PLN00116 661 --------------------------------------------------------KDSVVAGFQWATKEGALAEENMRG 684 (843)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHhcCCccCCeeee
Confidence 013567999999999999999999
Q ss_pred eEEEEecCcccc--CCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCC-
Q psy11896 897 VRMVLKDGDNHM--VDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD- 973 (1043)
Q Consensus 897 ~~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~- 973 (1043)
|+|+|.++.+|+ .++++++|++|+++||++||++|+||||||||.|+|+||++++|+||++|++|||+|++++..++
T Consensus 685 V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t 764 (843)
T PLN00116 685 ICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGT 764 (843)
T ss_pred EEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCC
Confidence 999999999997 55667899999999999999999999999999999999999999999999999999999998765
Q ss_pred -cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHH------HHHHHHHHHHHhcCCchH
Q psy11896 974 -WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPE------VQDRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 974 -~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 1034 (1043)
.++|+|++|++|||||+++||++|||+|+|+|+|+||+++|+| .+.+++.+.|+||||.++
T Consensus 765 ~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~~v~~dp~~~~~~a~~~~~~~R~rKGl~~~ 832 (843)
T PLN00116 765 PLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEAGSQAAQLVADIRKRKGLKEQ 832 (843)
T ss_pred ceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeEECCCCCCCchhHHHHHHHHHHhhCCCCCC
Confidence 4899999999999999999999999999999999999999865 567899999999999764
No 10
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=8.9e-107 Score=995.42 Aligned_cols=640 Identities=32% Similarity=0.472 Sum_probs=542.4
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEE----EEecCeeEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATY----TLWKDHNIN 270 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~----~~~~~~~i~ 270 (1043)
..+++|||+++||.|+|||||+++|++.++.+.+. ..++ .+++|+.+.|++||+|+.....+ +.|++++++
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~---~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~ 89 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQ---QLYLDFDEQEQERGITINAANVSMVHEYEGNEYLIN 89 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCc---eeecCCCHHHHhhcchhhcccceeEEeecCCceEEE
Confidence 45678999999999999999999999998887662 2222 45789999999999999987655 577899999
Q ss_pred EEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCC
Q psy11896 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHN 350 (1043)
Q Consensus 271 liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~ 350 (1043)
|||||||.+|..++..+++.+|++|+|+|+.+|+..+|..+|+.+...++|.++|+||+|+..+++....+++++.++..
T Consensus 90 liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~ 169 (720)
T TIGR00490 90 LIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKI 169 (720)
T ss_pred EEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888888765
Q ss_pred ceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhc-------
Q psy11896 351 AAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE------- 423 (1043)
Q Consensus 351 ~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~------- 423 (1043)
+..++.++.. .+|+++ +..+.+..++.++.|++.|++
T Consensus 170 ~~~v~~~~~~-----------------------------~~~~~~-------~~~~~~~~~~~~~~f~s~~~~~~~~~~~ 213 (720)
T TIGR00490 170 ITEVNKLIKA-----------------------------MAPEEF-------RDKWKVRVEDGSVAFGSAYYNWAISVPS 213 (720)
T ss_pred hHHHHhhhhc-----------------------------cCCHHH-------hhceEechhhCCHHHHhhhhcccccchh
Confidence 4433322211 001111 112334445566677777766
Q ss_pred --cCCCCHHHHHHHHHHhhhcC--ccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc------CcccceeeeC
Q psy11896 424 --EKSISEDDIKKAIRRSTLTR--KFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLN 493 (1043)
Q Consensus 424 --~~~~~~~~l~~~l~~~~~~~--~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~ 493 (1043)
+..++.+++.+.+.+..... .++|| ++.|||+|++++|+|.+++..+.+. ..+.......
T Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (720)
T TIGR00490 214 MKKTGIGFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLN 283 (720)
T ss_pred HhhcCCCHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhccc
Confidence 55566777777666544433 68898 5899999999999998765433221 1111234566
Q ss_pred CCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC
Q psy11896 494 PSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV 572 (1043)
Q Consensus 494 ~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl 572 (1043)
|+ +++|++++|||+.++++ |+++|+|||||+|++||.|++.+.+.+++|.+|+.++|.+.++++++.|||||+|.|+
T Consensus 284 ~d--~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl 361 (720)
T TIGR00490 284 CD--PKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGL 361 (720)
T ss_pred CC--CCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECc
Confidence 76 89999999999999988 9999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccccCcEEecCCCC-cccccCC-CCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhH
Q psy11896 573 -DCASGDTFVTDKNN-SISLESI-YVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELH 649 (1043)
Q Consensus 573 -~~~~Gdtl~~~~~~-~~~~~~~-~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelH 649 (1043)
++.+||||+ +... ...++++ .+|+|+++++|+|+++.|+++|.++|++|++|||+|++.+|++|||++|+||||+|
T Consensus 362 ~~~~~GdtL~-~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElH 440 (720)
T TIGR00490 362 KDAVAGETIC-TTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELH 440 (720)
T ss_pred cccccCceee-cCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEcccee
Confidence 788999998 3432 3445655 47899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccEEecCCeeeEEEeeecccc-eeeeeeeccCCCCceEEEEEEEeeCCCCC----------------
Q psy11896 650 LEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFD-FDYLHKKQSGGSGQYGRVIGTLEPLPPSA---------------- 712 (1043)
Q Consensus 650 lei~~~rL~~~~~v~i~~~~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~~eP~~~~~---------------- 712 (1043)
||++++||+++||+++++++|+|+|||||++.++ ..+++ .++|++++++++|++++.
T Consensus 441 Lei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~ 514 (720)
T TIGR00490 441 LEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKK 514 (720)
T ss_pred HHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECCcchhhhhhcccccccccch
Confidence 9999999999999999999999999999998876 44443 247899999999997641
Q ss_pred -----------------------CCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccC
Q psy11896 713 -----------------------NTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVD 769 (1043)
Q Consensus 713 -----------------------~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~ 769 (1043)
++++.|+++++|+.+|++|++||++||+||+++|||+|+||+||+|+|.||++|..
T Consensus 515 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~- 593 (720)
T TIGR00490 515 KERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHED- 593 (720)
T ss_pred HHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccc-
Confidence 15788888888888888888888888887777777777777777766666655420
Q ss_pred ChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhcccccCCC
Q psy11896 770 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGS 849 (1043)
Q Consensus 770 ~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1043)
T Consensus 594 -------------------------------------------------------------------------------- 593 (720)
T TIGR00490 594 -------------------------------------------------------------------------------- 593 (720)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHH
Q psy11896 850 RVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYE 929 (1043)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~ 929 (1043)
.+|+++++|++|+++||++||+
T Consensus 594 ----------------------------------------------------------~vds~~~~f~~a~~~a~~~a~~ 615 (720)
T TIGR00490 594 ----------------------------------------------------------AVHRGPAQVIPAVRSGIFAAMM 615 (720)
T ss_pred ----------------------------------------------------------cccCccchHHHHHHHHHHHHHH
Confidence 1466778899999999999999
Q ss_pred hcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecc
Q psy11896 930 EGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSR 1009 (1043)
Q Consensus 930 ~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~ 1009 (1043)
+|+|+||||||.|+|+||.+++|+||++|++|||+|++++..++.++|+|++|++|||||+++||++|||+|+|+|.|+|
T Consensus 616 ~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~ 695 (720)
T TIGR00490 616 QAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEGDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAG 695 (720)
T ss_pred hCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCCCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecc
Confidence 99999999999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCch
Q psy11896 1010 YSPALPEVQDRLVNEYQEATNPQA 1033 (1043)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1043)
|+++|++++++++.+.|+||||++
T Consensus 696 y~~vp~~~~~~ii~~~r~rkgl~~ 719 (720)
T TIGR00490 696 FELVPQNLQQEFVMEVRKRKGLKL 719 (720)
T ss_pred cccCCHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999986
No 11
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=4.8e-106 Score=991.91 Aligned_cols=648 Identities=33% Similarity=0.472 Sum_probs=529.1
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe----cCeeE
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW----KDHNI 269 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i 269 (1043)
.+.++||||+++||+|||||||+++|++.++.+.+. ..++ ++++|+.+.|++||+|++++..++.| +++.+
T Consensus 15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i 89 (731)
T PRK07560 15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGE---QLALDFDEEEQARGITIKAANVSMVHEYEGKEYLI 89 (731)
T ss_pred hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCc---ceecCccHHHHHhhhhhhccceEEEEEecCCcEEE
Confidence 345689999999999999999999999999988763 2333 56899999999999999999988887 47899
Q ss_pred EEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCC
Q psy11896 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGH 349 (1043)
Q Consensus 270 ~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~ 349 (1043)
+|||||||.||..++.++++.+|++|+|||+.+|++.+|+.+|+++.+.++|+++|+||||+..+++....+.+.+.++.
T Consensus 90 ~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~ 169 (731)
T PRK07560 90 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLK 169 (731)
T ss_pred EEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877654444444443332
Q ss_pred CceeeeeccccCCCeeEEEEcccce----eEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccC
Q psy11896 350 NAAFLQIPIGLGSETKGIIDLIQRK----AIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425 (1043)
Q Consensus 350 ~~~~~~~p~~~~~~~~g~~dl~~~~----~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~ 425 (1043)
.. ..+.++++.+.+. .+.+.+..|+....+.. ......+..+.+..++. +++++.|.++
T Consensus 170 ~~----------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~-----~~~~~~~~~~~~~~~~~-~~l~e~~~~~- 232 (731)
T PRK07560 170 II----------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSAL-----YNWAISVPMMQKTGIKF-KDIIDYYEKG- 232 (731)
T ss_pred HH----------HHHHHHHHHhhhhhhhcceeecCCCCcEeeeecc-----cccceeHHHHHHhCCCH-HHHHHHHhcC-
Confidence 11 0111122222211 12233333443221111 01111222344444444 5688888543
Q ss_pred CCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc------CcccceeeeCCCCCCC
Q psy11896 426 SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLNPSRDGK 499 (1043)
Q Consensus 426 ~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~~ 499 (1043)
+.+++. +++|++ +.|||+|++++|+|.++++.+.+. ..+.......|+ ++
T Consensus 233 --~~~~l~----------~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~ 288 (731)
T PRK07560 233 --KQKELA----------EKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCD--PN 288 (731)
T ss_pred --CHHHHH----------hhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccC--CC
Confidence 234442 237884 799999999999998765433222 111223456677 88
Q ss_pred CCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccC
Q psy11896 500 HPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASG 577 (1043)
Q Consensus 500 ~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~G 577 (1043)
+|++++|||+.+|++ |+++|+|||||+|++||.|++.+.+.+++|.+|+.++|++..+++++.||||++|.|+ ++.+|
T Consensus 289 ~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~G 368 (731)
T PRK07560 289 GPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAG 368 (731)
T ss_pred CCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcccccccC
Confidence 999999999999998 9999999999999999999999988889999999999999999999999999999999 68899
Q ss_pred cEEecCCCCcccccCC-CCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHH
Q psy11896 578 DTFVTDKNNSISLESI-YVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 656 (1043)
Q Consensus 578 dtl~~~~~~~~~~~~~-~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~r 656 (1043)
|||+ +.....+++++ .+|+|+++++|+|.++.|.++|.++|++|.+|||+|++.++++|||++|+|+||+|||++++|
T Consensus 369 dtL~-~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~r 447 (731)
T PRK07560 369 ETVV-SVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYR 447 (731)
T ss_pred CEEe-CCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHH
Confidence 9998 45555667776 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccEEecCCeeeEEEeeecccc-eeeeeeeccCCCCceEEEEEEEeeCCCCC-----------------------
Q psy11896 657 MEREYNCPVVLGKPKVAFKETLVQPFD-FDYLHKKQSGGSGQYGRVIGTLEPLPPSA----------------------- 712 (1043)
Q Consensus 657 L~~~~~v~i~~~~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~~eP~~~~~----------------------- 712 (1043)
|+++|++++++++|.|+|||||.++++ ..+. ++ ++|++++++++|++++.
T Consensus 448 L~~~~~vev~~~~p~V~yrETI~~~~~~~~~~----~~--~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 521 (731)
T PRK07560 448 IKRDYGIEVVTSEPIVVYRETVRGKSQVVEGK----SP--NKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILRE 521 (731)
T ss_pred HHHHhCCceEecCCEEEEEEecccCccceEEE----CC--CCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHH
Confidence 999999999999999999999998874 3322 22 45899999999987531
Q ss_pred ------------------CCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhH
Q psy11896 713 ------------------NTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEIS 774 (1043)
Q Consensus 713 ------------------~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~ 774 (1043)
++++.|+|+++|+.+|++|+++|++||+||+.+|||+|+||+||+|+|.||++|..
T Consensus 522 ~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d------ 595 (731)
T PRK07560 522 KLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHED------ 595 (731)
T ss_pred hhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeeccc------
Confidence 13677777777777777777777777777777777777777777766666655420
Q ss_pred HHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhcccccCCCccccc
Q psy11896 775 FILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGV 854 (1043)
Q Consensus 775 ~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (1043)
T Consensus 596 -------------------------------------------------------------------------------- 595 (731)
T PRK07560 596 -------------------------------------------------------------------------------- 595 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCce
Q psy11896 855 RMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQ 934 (1043)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~ 934 (1043)
..++++++|++|+++||++||++|+|+
T Consensus 596 -----------------------------------------------------~~~~~~~~~~~a~~~a~~~a~~~a~p~ 622 (731)
T PRK07560 596 -----------------------------------------------------AIHRGPAQVIPAVRNAIFAAMLTAKPT 622 (731)
T ss_pred -----------------------------------------------------ccccccchHHHHHHHHHHHHHHhCCCE
Confidence 134557899999999999999999999
Q ss_pred eecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 935 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 935 llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||||.|+|+||++++|+||++|++|||+|++++..++.++|+|++|++|+|||+++||++|+|+|+|+|.|+||+++|
T Consensus 623 LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 702 (731)
T PRK07560 623 LLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVP 702 (731)
T ss_pred EeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCCCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCC
Confidence 99999999999999999999999999999999999877789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCch
Q psy11896 1015 PEVQDRLVNEYQEATNPQA 1033 (1043)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~ 1033 (1043)
++++++++++.|+||||+.
T Consensus 703 ~~~~~~ii~~~r~rKGl~~ 721 (731)
T PRK07560 703 DSLQLDIVRQIRERKGLKP 721 (731)
T ss_pred HHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999985
No 12
>KOG0469|consensus
Probab=100.00 E-value=4.4e-106 Score=866.28 Aligned_cols=716 Identities=25% Similarity=0.357 Sum_probs=559.4
Q ss_pred cCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-----
Q psy11896 191 SEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----- 265 (1043)
Q Consensus 191 ~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----- 265 (1043)
.++....+|||+.+++|+|+|||||+++|....+.++.. +.| -++++|.+++|++|||||+++.+++.+.
T Consensus 11 ~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a---kaG--e~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~d 85 (842)
T KOG0469|consen 11 ELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA---KAG--ETRFTDTRKDEQERGITIKSTAISLFFEMSDDD 85 (842)
T ss_pred HHhccccccccceEEEEecCCcchhhHHHHHhhceeeec---ccC--CccccccccchhhcceEeeeeeeeehhhhhHhH
Confidence 456677889999999999999999999999888888642 112 2679999999999999999999987652
Q ss_pred -----------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC--
Q psy11896 266 -----------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL-- 332 (1043)
Q Consensus 266 -----------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~-- 332 (1043)
+..|||||.|||+||++|+..|||+.|++++|||+.+|++.||+.+++++..+++..++|+||||+.
T Consensus 86 l~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlL 165 (842)
T KOG0469|consen 86 LKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALL 165 (842)
T ss_pred HHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --CCCHHHHHHHHHHHhCCCcee-----------eee-----ccccCCCeeEEEEcccceeEeecCCCC-----------
Q psy11896 333 --GADPYRVINQMRQKVGHNAAF-----------LQI-----PIGLGSETKGIIDLIQRKAIYFEGPLG----------- 383 (1043)
Q Consensus 333 --~~~~~~~~~~i~~~l~~~~~~-----------~~~-----p~~~~~~~~g~~dl~~~~~~~~~~~~g----------- 383 (1043)
+.+.++.++.+++......+. +++ .++.++++.||.+.+.+++-.|..+.|
T Consensus 166 ELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LW 245 (842)
T KOG0469|consen 166 ELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLW 245 (842)
T ss_pred hhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhh
Confidence 445566666666655422111 111 245678999999988765544422211
Q ss_pred -Ce--------eEe-------ecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccC---------CCCHHHHHHHHHH
Q psy11896 384 -DN--------LRI-------EEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK---------SISEDDIKKAIRR 438 (1043)
Q Consensus 384 -~~--------~~~-------~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~---------~~~~~~l~~~l~~ 438 (1043)
+. +.. .+.+..|...+.....++.+++.+...+-...|++.. ......|.+
T Consensus 246 g~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK---- 321 (842)
T KOG0469|consen 246 GDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLK---- 321 (842)
T ss_pred cccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHH----
Confidence 11 100 1122333334444555566666555433222333321 112222221
Q ss_pred hhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc------CcccceeeeCCCCCCCCCcEEEEEeeeec
Q psy11896 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLNPSRDGKHPFIALAFKLEAG 512 (1043)
Q Consensus 439 ~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~V~K~~~d 512 (1043)
..+++|.|. -+.||++|.-+||||..++.+|... +++....+.+|| +++|+++||+|+...
T Consensus 322 -~vMr~wLPA----------adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD--~~aplmmYvSKMvPt 388 (842)
T KOG0469|consen 322 -VVMRKWLPA----------ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCD--PKAPLMMYVSKMVPT 388 (842)
T ss_pred -HHHHHhcch----------HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccC--CCCCeEEeeeecccc
Confidence 346678887 5899999999999999999887655 223334567888 999999999999876
Q ss_pred CC--ccEEEEEEecCeecCCCEEEecCC----CcEE-----EeceEEEeccCCeeecCeecCCCEEEEccCc--cccCcE
Q psy11896 513 KF--GQLTYMRCYQGKLRKGEMIYNVRT----DKKV-----RVSRLVRLHSNEMEDVEEVLAGDIFALFGVD--CASGDT 579 (1043)
Q Consensus 513 ~~--G~i~~~RV~sGtl~~gd~v~~~~~----~~~~-----ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~Gdt 579 (1043)
.. .+++|+|||||++.+|+++.+... |+++ .|.+..+|||+..++++.++||||+++.|+| +..+.|
T Consensus 389 sDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGT 468 (842)
T KOG0469|consen 389 SDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGT 468 (842)
T ss_pred CCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCc
Confidence 54 458999999999999999987643 3332 4667778999999999999999999999994 334558
Q ss_pred EecCCCCcccccCCCC-CCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHH
Q psy11896 580 FVTDKNNSISLESIYV-ADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 658 (1043)
Q Consensus 580 l~~~~~~~~~~~~~~~-~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~ 658 (1043)
|+ ......++..++| -.||++++||++++.|++||.++|++|+++||.+++.+ +|+||++++|.||||||||+++|+
T Consensus 469 iT-t~e~AHNmrvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLe 546 (842)
T KOG0469|consen 469 IT-TSEAAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLE 546 (842)
T ss_pred ee-ehhhhccceEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHh
Confidence 87 3444566777776 48999999999999999999999999999999999987 689999999999999999999999
Q ss_pred hhc-CccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHH
Q psy11896 659 REY-NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIK 737 (1043)
Q Consensus 659 ~~~-~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~ 737 (1043)
+.| ++.++.++|.|+||||+.++++..+..|. .+.++++++..+|++.+ +..
T Consensus 547 edhA~iPlk~sdPvVsYrEtvs~~ss~~~lsKS----pNKHNRi~mtaeP~~~~-------------------l~~---- 599 (842)
T KOG0469|consen 547 EDHACIPLKKSDPVVSYRETVSEESSQTCLSKS----PNKHNRIYMTAEPMDDG-------------------LSD---- 599 (842)
T ss_pred hcccCCceecCCCeeeeecccccccchhhhccC----CcccceeEEecccCCch-------------------hhh----
Confidence 999 89999999999999999988876655443 34678999999998642 112
Q ss_pred HHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhh
Q psy11896 738 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLV 817 (1043)
Q Consensus 738 g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l 817 (1043)
.++.|-.. . .-+|...++. +. .+
T Consensus 600 ----~i~~g~v~--------------------~-rd~fK~rAr~-~a---ek---------------------------- 622 (842)
T KOG0469|consen 600 ----DIENGKVN--------------------A-RDEFKARARI-LA---EK---------------------------- 622 (842)
T ss_pred ----hhhcCccC--------------------h-hHHHHHHHHH-HH---HH----------------------------
Confidence 22222110 0 0122222211 10 11
Q ss_pred hcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHH--HHHhhhhhhhhhcCcccccccc
Q psy11896 818 TKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF--ILAAHGFKQMCEKGCLSGSRVA 895 (1043)
Q Consensus 818 ~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gf~~~~~~Gpl~~e~~~ 895 (1043)
.+|..-+ ..++|+|||+..|||++++.+.. | +-++. .+++.|||||+++||||+|-|+
T Consensus 623 -------------y~~dvt~---aRKIWCfgPd~tg~Nll~D~TK~--v--qylnEIKdsVvagFqwA~keG~l~~E~mR 682 (842)
T KOG0469|consen 623 -------------YGWDVTE---ARKIWCFGPDGTGPNLLVDQTKG--V--QYLNEIKDSVVAGFQWATKEGPLFGENMR 682 (842)
T ss_pred -------------hCCchhh---hheeeEeCCCCCCCcEEEecchh--h--HHHHHHHHHHHHHHHHHhccCCccccccc
Confidence 1232222 35689999999999999864421 1 11111 3689999999999999999999
Q ss_pred ceEEEEecCcccc--CCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCC
Q psy11896 896 GVRMVLKDGDNHM--VDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD 973 (1043)
Q Consensus 896 ~~~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~ 973 (1043)
||+|++.|..+|. .+...+|+++++|++|+.+++.|.|+|+||+|.|||+||++++|.||++|++|||++.+++...|
T Consensus 683 gvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~G 762 (842)
T KOG0469|consen 683 GVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPG 762 (842)
T ss_pred ceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCC
Confidence 9999999999996 46677899999999999999999999999999999999999999999999999999999998755
Q ss_pred --cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHH------HHHHHHHHHhcCCchH
Q psy11896 974 --WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQ------DRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 974 --~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 1034 (1043)
+|.|+|++||.|||||..+|||-|.|+|.+||.|+||+++|+|.. -+++.+.|++|||.+.
T Consensus 763 tp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~lpgdp~dp~sk~~~iV~~~RKrkglke~ 831 (842)
T KOG0469|consen 763 TPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSILPGDPLDPTSKPGQIVLATRKRKGLKEG 831 (842)
T ss_pred CcceEEEEEeecccccccchhhhcccCCccccceeeeccccCCCCCCCCCccchHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999999865 5899999999999864
No 13
>KOG0464|consensus
Probab=100.00 E-value=3.1e-102 Score=819.82 Aligned_cols=672 Identities=34% Similarity=0.538 Sum_probs=577.2
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
-+..++|||+|++|+++||||.++++++..|.+...|.+++|+ +++|++..|++||||++++...+.|+|+++|+||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgd---tvtdfla~erergitiqsaav~fdwkg~rinlid 108 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGD---TVTDFLAIERERGITIQSAAVNFDWKGHRINLID 108 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCc---hHHHHHHHHHhcCceeeeeeeecccccceEeeec
Confidence 3456799999999999999999999999999999999999995 5789999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||+||.-++++.+|+.|+++.|+|++.|+++||..+|+++.++++|.++|+||||+..++++..+++++++++..+..
T Consensus 109 tpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~ 188 (753)
T KOG0464|consen 109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALK 188 (753)
T ss_pred CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCe-eEEEEcccceeEee--cCCCCCeeEeecC----chhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--
Q psy11896 354 LQIPIGLGSET-KGIIDLIQRKAIYF--EGPLGDNLRIEEI----PADLKKEAESKRQELIEHVAEGDEILGEMFLEE-- 424 (1043)
Q Consensus 354 ~~~p~~~~~~~-~g~~dl~~~~~~~~--~~~~g~~~~~~~i----~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~-- 424 (1043)
+++|+++..+| +|++|++..+.+.| .+.+|..+...++ .+++.+...++|.+|.+++++.|+++.++|+++
T Consensus 189 l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~ 268 (753)
T KOG0464|consen 189 LQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFD 268 (753)
T ss_pred EEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhh
Confidence 99999999998 89999999988888 5566777765553 357778888999999999999999999999887
Q ss_pred ---CCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCC
Q psy11896 425 ---KSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHP 501 (1043)
Q Consensus 425 ---~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p 501 (1043)
..++.+++..++++.+...+..||+||||.+|.|+++|||++.-|+|||.++. |.+-+ -....
T Consensus 269 ~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeern-yeflq-------------wykdd 334 (753)
T KOG0464|consen 269 ENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERN-YEFLQ-------------WYKDD 334 (753)
T ss_pred ccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcc-hHHHh-------------hhhhh
Confidence 34778999999999999999999999999999999999999999999998764 22111 03456
Q ss_pred cEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcE
Q psy11896 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDT 579 (1043)
Q Consensus 502 ~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdt 579 (1043)
++++.||+.||+. |.++|.|+|||+++.+..++|.+....+.+.+++.+.++++.+++++.||||....|+ .+.+|||
T Consensus 335 lcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdt 414 (753)
T KOG0464|consen 335 LCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDT 414 (753)
T ss_pred HHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCe
Confidence 8899999999987 9999999999999999999999988999999999999999999999999999999999 7889999
Q ss_pred EecCCC-----------------------CcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCC
Q psy11896 580 FVTDKN-----------------------NSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPE 636 (1043)
Q Consensus 580 l~~~~~-----------------------~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~e 636 (1043)
+++++. ....|.++++|.|||+|.|||++.+.++.+..+|+.|.+||||+.+..|++
T Consensus 415 ivaskasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~d 494 (753)
T KOG0464|consen 415 IVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPD 494 (753)
T ss_pred EEecchhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCC
Confidence 974321 123478899999999999999999999999999999999999999999999
Q ss_pred CCcEEEEechhhHHHHHHHHHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCc--eEEEEEEEeeCCCC-CC
Q psy11896 637 SKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQ--YGRVIGTLEPLPPS-AN 713 (1043)
Q Consensus 637 tge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~--~~~v~~~~eP~~~~-~~ 713 (1043)
|||+++.||||||+|++.+|++|+||++..+++.+|+|||+|.+...........-|...+ |.++..+.+|-... +-
T Consensus 495 sgqtil~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~ 574 (753)
T KOG0464|consen 495 SGQTILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPF 574 (753)
T ss_pred CCceEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccc
Confidence 9999999999999999999999999999999999999999998766544333333333333 55555555552110 01
Q ss_pred CCeEEE--eccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhcc
Q psy11896 714 TKLEFI--DETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGV 791 (1043)
Q Consensus 714 ~~~~f~--~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~ 791 (1043)
..++|. .....+-+ +--+.||++|+..
T Consensus 575 kkiefe~~es~n~~~l-~~sqeaie~g~~n-------------------------------------------------- 603 (753)
T KOG0464|consen 575 KKIEFELAESANEGLL-DVSQEAIEEGCHN-------------------------------------------------- 603 (753)
T ss_pred eeEEeeccccccchhh-hhHHHHHHhhHHH--------------------------------------------------
Confidence 123332 11111111 0013344444444
Q ss_pred ccccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhh
Q psy11896 792 WQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEI 871 (1043)
Q Consensus 792 ~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1043)
T Consensus 604 -------------------------------------------------------------------------------- 603 (753)
T KOG0464|consen 604 -------------------------------------------------------------------------------- 603 (753)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecC-cc
Q psy11896 872 SFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPI-EF 950 (1043)
Q Consensus 872 ~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~-~~ 950 (1043)
||.+|||++.|++.|++++..+.+|+--.++..+.+|+.++..+|+.++.-.++||.|.++|.+-. ++
T Consensus 604 -----------a~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~l~eplm~lei~i~~dd~ 672 (753)
T KOG0464|consen 604 -----------ACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQLLEPLMELEIEIANDDP 672 (753)
T ss_pred -----------HHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhHHHhhhhhheEEEEecCCC
Confidence 455555555555555556666666655566778889999999999999999999999999999865 99
Q ss_pred hhhhhhHhhccCeEEeccccCCC--cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHHHHHHHH
Q psy11896 951 QGSVLNLVTKRHGILQGNEGKDD--WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNE 1024 (1043)
Q Consensus 951 ~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~ 1024 (1043)
+..|+.+|.+|||++..++..+. ...|.|.+|++|..||++.||..|||-|.|.++|++|+.|.++-+-+++++
T Consensus 673 ~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn~~dk~~il~k 748 (753)
T KOG0464|consen 673 LQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMNEHDKMEILKK 748 (753)
T ss_pred ccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcChHHHHHHHHh
Confidence 99999999999999999998765 556999999999999999999999999999999999999999988888863
No 14
>KOG0468|consensus
Probab=100.00 E-value=2.7e-93 Score=790.02 Aligned_cols=725 Identities=22% Similarity=0.289 Sum_probs=556.3
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-----cC
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-----KD 266 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~ 266 (1043)
.+..+..+|||+++||-+||||+|++.|..+++---. .....-.+++|.+..|++||+++++...++.. +.
T Consensus 121 l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~----~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS 196 (971)
T KOG0468|consen 121 LMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFS----KNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKS 196 (971)
T ss_pred hccCcceEEEEEEeeccccChhHHHHhhceecccccc----ccccccccccccchhhHhcCceEeecceEEEEecCcCce
Confidence 5667788999999999999999999999977652111 01111246899999999999999999888765 45
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC----CCHHHHHHH
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG----ADPYRVINQ 342 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~----~~~~~~~~~ 342 (1043)
+.+|++|||||++|++|+.++++.+|++++|+|+.+|+.-+|+.+++.+.+.++|+++||||+|++. ..+.+++-+
T Consensus 197 ~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~K 276 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYK 276 (971)
T ss_pred eeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999973 334444333
Q ss_pred ---HHHHhCCCceee-------eecc----ccCCCeeEEEEcccceeEeecCCC-------------CCee--------E
Q psy11896 343 ---MRQKVGHNAAFL-------QIPI----GLGSETKGIIDLIQRKAIYFEGPL-------------GDNL--------R 387 (1043)
Q Consensus 343 ---i~~~l~~~~~~~-------~~p~----~~~~~~~g~~dl~~~~~~~~~~~~-------------g~~~--------~ 387 (1043)
+...++..+..+ --|+ -..+..-|+.+.+..++.+|-... |+.+ .
T Consensus 277 LrHii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~ 356 (971)
T KOG0468|consen 277 LRHIIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFV 356 (971)
T ss_pred HHHHHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccc
Confidence 333333222211 1122 234555677777766554442211 1111 1
Q ss_pred ----eecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--CCCCHHHHHHHHH---HhhhcCccEEEEEeeccCCCC
Q psy11896 388 ----IEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEE--KSISEDDIKKAIR---RSTLTRKFTPVLVGTALKNKG 458 (1043)
Q Consensus 388 ----~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~--~~~~~~~l~~~l~---~~~~~~~~~Pv~~gSa~~~~G 458 (1043)
....+..|.+++.+.-.++.+++....++-++..+.+ ..+++++++-..+ +.+ ...| +|.
T Consensus 357 kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lv-c~~f----fg~------ 425 (971)
T KOG0468|consen 357 KKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLV-CKSF----FGI------ 425 (971)
T ss_pred cCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHH-HHHh----ccc------
Confidence 1123457888888888888888654433334444443 2345555432211 111 1112 111
Q ss_pred HHHHHHHHHHhCCCCCCCCcccccc---C---cccceeeeCCCCCCCCCcEEEEEeeeecCC--ccEEEEEEecCeecCC
Q psy11896 459 VQTLLDAVLDYLPNPGEVTNYAIEN---G---QEDKKVVLNPSRDGKHPFIALAFKLEAGKF--GQLTYMRCYQGKLRKG 530 (1043)
Q Consensus 459 v~~Lld~i~~~lPsp~~~~~~~~~~---~---~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~--G~i~~~RV~sGtl~~g 530 (1043)
-..+.|++++++|+|.+.......+ . ......++.|+ +++|++..+.|++.... -+.+|+||+||+++.|
T Consensus 426 ~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~--~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~ 503 (971)
T KOG0468|consen 426 ESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECN--ASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTG 503 (971)
T ss_pred hhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhC--CCCceeEEeecceecCCceeeeeeeeeeecceeec
Confidence 1468999999999998754332222 1 11123456777 99999999999998655 5689999999999999
Q ss_pred CEEEecCCC---------cEEEeceEEEeccCCeeecCeecCCCEEEEccCc--cccCcEEecC--CCCcccccCCCC-C
Q psy11896 531 EMIYNVRTD---------KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVD--CASGDTFVTD--KNNSISLESIYV-A 596 (1043)
Q Consensus 531 d~v~~~~~~---------~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~Gdtl~~~--~~~~~~~~~~~~-~ 596 (1043)
+.|.+...+ ....|+.++.+.+++..+|++|+||+++.|.|++ .....|+.+. +.....|+++.+ +
T Consensus 504 q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t 583 (971)
T KOG0468|consen 504 QDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNT 583 (971)
T ss_pred ceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCC
Confidence 999877543 2357889999999999999999999999999994 3456677732 233456777765 8
Q ss_pred CceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-CccEEecCCeeeEE
Q psy11896 597 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGKPKVAFK 675 (1043)
Q Consensus 597 ~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~v~i~~~~p~V~yr 675 (1043)
.|+++++++|.+|++++||.+||++.++++|.+...+ +|+||++|.|.|||.|++++.+||.-| .+++++++|.|.|.
T Consensus 584 ~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~ 662 (971)
T KOG0468|consen 584 EPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFC 662 (971)
T ss_pred cceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEE
Confidence 9999999999999999999999999999999987776 899999999999999999999999999 69999999999999
Q ss_pred EeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceec
Q psy11896 676 ETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAG 755 (1043)
Q Consensus 676 Eti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~ 755 (1043)
||+.+.++..+-..... .-.++.+-.|| +++|+.+-+++|.+.
T Consensus 663 Et~vetssikcfaetpn----kknkItmiaEP---------------------------lek~l~eDiEng~v~------ 705 (971)
T KOG0468|consen 663 ETVVETSSIKCFAETPN----KKNKITMIAEP---------------------------LEKGLAEDIENGVVV------ 705 (971)
T ss_pred EeeecccchhhhccCCC----ccCceeeeech---------------------------hhhhhhHHhhcCeEE------
Confidence 99988665432221111 11233333333 355666666666532
Q ss_pred eEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCcee
Q psy11896 756 VRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVT 835 (1043)
Q Consensus 756 v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~ 835 (1043)
+.+.. +|-|.+. +.+.+|..
T Consensus 706 ----I~wn~------------------------------------------------------krl~eff--qt~YdWDl 725 (971)
T KOG0468|consen 706 ----IDWNR------------------------------------------------------KRLGEFF--QTKYDWDL 725 (971)
T ss_pred ----eccch------------------------------------------------------hhhhhhh--hcccchhh
Confidence 11100 0111111 12346666
Q ss_pred eehhhhcccccCCCcccccceeeccCCCCcccchhhHHH--HHhhhhhhhhhcCccccccccceEEEEecCcccc--CCC
Q psy11896 836 IYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFI--LAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDS 911 (1043)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~--~~~ 911 (1043)
+.+ .+.|+|||+-.|||++++|+++++||+++++.. +|++||||+++|||||+||++||.|.|.|..+.+ .+.
T Consensus 726 LAa---RsiWaFgpd~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~r 802 (971)
T KOG0468|consen 726 LAA---RSIWAFGPDYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHR 802 (971)
T ss_pred hhh---cceeccCCCCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCcccccc
Confidence 554 467999999999999999999999999999996 8999999999999999999999999999988875 466
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCC--cEEEEEEechhhhcCc
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYAEIPLNDMFGF 989 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~ 989 (1043)
+.+|+++++|++||.||+.|.||||||+|.|||++|.+++..||.+|++|||+|...-+..| .++|+|++||.|||||
T Consensus 803 gggQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGF 882 (971)
T KOG0468|consen 803 GGGQIIPTARRVAYSAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGF 882 (971)
T ss_pred CCCccchHHHHHHHHHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCc
Confidence 78999999999999999999999999999999999999999999999999999999887765 8999999999999999
Q ss_pred hHHHHhhcCCceEEEeEecccccCCHHHH------------------HHHHHHHHHhcCCchH
Q psy11896 990 AGDLRSSTQGKGEFSMDYSRYSPALPEVQ------------------DRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 990 ~~~lr~~t~G~~~~~~~f~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 1034 (1043)
.||||..|||+|.+++.|+||++||+|.. ...+=+-|+|||+++-
T Consensus 883 ETDLR~hTqGqa~C~~vF~HW~~VPGDpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGlsed 945 (971)
T KOG0468|consen 883 ETDLRVHTQGQAFCLSVFDHWRIVPGDPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGLSED 945 (971)
T ss_pred ccceeeeccchhHHHHhhhhcccCCCCccccccccccCCCCCcchhHHHHHHHhhhhcccccc
Confidence 99999999999999999999999999743 3445567889999864
No 15
>KOG0467|consensus
Probab=100.00 E-value=1e-90 Score=785.58 Aligned_cols=750 Identities=24% Similarity=0.350 Sum_probs=530.9
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEE
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINII 272 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~li 272 (1043)
..+...|||+++++|+|||||||+++|+..+|.++. ...+. -+++|++++|+.||||++++.+++..+++.+|||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~--rlagk---irfld~redeq~rgitmkss~is~~~~~~~~nli 77 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISS--RLAGK---IRFLDTREDEQTRGITMKSSAISLLHKDYLINLI 77 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEech--hhccc---eeeccccchhhhhceeeeccccccccCceEEEEe
Confidence 456678999999999999999999999999998876 23444 4689999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC----CCCHHHHHHHHHHHhC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL----GADPYRVINQMRQKVG 348 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~~~~~~~~~~i~~~l~ 348 (1043)
|+|||+||++++.+|.+.+|+++++||+.+|++.||..++++++..++.+++||||||++ ...+.+.+..+.+.+.
T Consensus 78 dspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~ 157 (887)
T KOG0467|consen 78 DSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIE 157 (887)
T ss_pred cCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999975 5667777666665443
Q ss_pred C-CceeeeeccccCCCeeEEEE------cccceeEeecCCCCCeeEeecCc------hhHHHHHH----HHHHHHHHHH-
Q psy11896 349 H-NAAFLQIPIGLGSETKGIID------LIQRKAIYFEGPLGDNLRIEEIP------ADLKKEAE----SKRQELIEHV- 410 (1043)
Q Consensus 349 ~-~~~~~~~p~~~~~~~~g~~d------l~~~~~~~~~~~~g~~~~~~~i~------~~~~~~~~----~~r~~l~e~l- 410 (1043)
. |.+.- .-+.|++. .+.....+|++.+|+......+. +.+.+... ..+.++...+
T Consensus 158 ~vn~~i~-------~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lw 230 (887)
T KOG0467|consen 158 QVNGVIG-------QFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLW 230 (887)
T ss_pred HhhhHHH-------HhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhc
Confidence 2 11100 00111110 11134456666666665444332 11111111 1111111111
Q ss_pred -----------------------------------------hcCChHHHHHHhccC--CCCHHHHHHHHHHhhhcCccEE
Q psy11896 411 -----------------------------------------AEGDEILGEMFLEEK--SISEDDIKKAIRRSTLTRKFTP 447 (1043)
Q Consensus 411 -----------------------------------------~e~dd~l~~~~l~~~--~~~~~~l~~~l~~~~~~~~~~P 447 (1043)
...|-+-+++..... .+-..+++..+. .....|+|
T Consensus 231 gd~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~--~im~~wLP 308 (887)
T KOG0467|consen 231 GDRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLD--AIMSTWLP 308 (887)
T ss_pred cceeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHH--HHHHhhcc
Confidence 111111122222111 122223332221 24678888
Q ss_pred EEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc---Cc------ccceeeeCCCCCCCCCcEEEEEeeeecCC----
Q psy11896 448 VLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN---GQ------EDKKVVLNPSRDGKHPFIALAFKLEAGKF---- 514 (1043)
Q Consensus 448 v~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~---~~------~~~~~~~~~~~~~~~p~~~~V~K~~~d~~---- 514 (1043)
+- +..+-+.+.++|+|.+.+..+... .+ +....+..|+ +++|...||.|+...+.
T Consensus 309 ls----------~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~--~~~pviv~Vskm~~~~~k~lp 376 (887)
T KOG0467|consen 309 LS----------DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCS--KESPVLVFVSKMLATPLKYLP 376 (887)
T ss_pred cc----------cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCC--CCCcEEEEEEeeeccchhhCc
Confidence 82 577788889999998776554332 11 1112234455 89999999999987643
Q ss_pred -c-cEEEEEEecCeecCCCEEEecCC-------CcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCC
Q psy11896 515 -G-QLTYMRCYQGKLRKGEMIYNVRT-------DKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDK 584 (1043)
Q Consensus 515 -G-~i~~~RV~sGtl~~gd~v~~~~~-------~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~ 584 (1043)
- .++|+||||||++.||.+|..+. -.+.+|.++|+++|++..+.+++++||+++|.|- ......||+ +.
T Consensus 377 ~~~l~~~ari~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~-s~ 455 (887)
T KOG0467|consen 377 QSRLLAFARIFSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLC-SK 455 (887)
T ss_pred hhhheeeeeeccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceec-cc
Confidence 3 58999999999999999998754 1356899999999999999999999999999983 223456888 33
Q ss_pred CCcccccC-CCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-C
Q psy11896 585 NNSISLES-IYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-N 662 (1043)
Q Consensus 585 ~~~~~~~~-~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~ 662 (1043)
....++.. ...-+|.++++|+|.+|.++++|.++|+.|+..||++++.. +++||+++.+.||+||+.|+.+|++ | +
T Consensus 456 ~~~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v-~~~gEhvl~~aGevhlerc~kDL~e-fa~ 533 (887)
T KOG0467|consen 456 VPCGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRV-EENGEHVLVTAGEVHLERCLKDLKE-FAK 533 (887)
T ss_pred CCCcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHH-hhccceeeeeccHHHHHHHHHHHhh-hhc
Confidence 33333332 33468999999999999999999999999999999999987 6899999999999999999999999 6 8
Q ss_pred ccEEecCCeeeEEEeeecccceeeeeeeccCCC-----CceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHH
Q psy11896 663 CPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGS-----GQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIK 737 (1043)
Q Consensus 663 v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~-----~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~ 737 (1043)
+++++++|.|+||||+.+.+..... -+.|.. -.--.+..++-|++. ....|.++. ...+.
T Consensus 534 i~i~vSeP~vpfrET~~e~s~l~~~--~~I~~~~~~~~~~~~ki~~~~~pl~~---~~v~~l~~~------~~ti~---- 598 (887)
T KOG0467|consen 534 IEISVSEPLVPFRETIIEDSDLLAN--LSIGQETKCLPRGQLKIKLRVVPLSG---AVVDLLDKN------SSLIS---- 598 (887)
T ss_pred eEEEecCCccchhhhccccchhhhh--hhcCcccccccccceeEEeeeccccc---ceecccccc------chhcc----
Confidence 9999999999999999766544311 011100 000223334444431 111221111 00111
Q ss_pred HHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhh
Q psy11896 738 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLV 817 (1043)
Q Consensus 738 g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l 817 (1043)
|.+.|+. ..+. .+.+....-+...+++.+..++ +..
T Consensus 599 --------~i~~~~~-~~~~---i~e~~k~~~~e~ls~~~s~~~~-------------------------------~~~- 634 (887)
T KOG0467|consen 599 --------NILRGES-RQVP---IDESQKGSFEENLSLLISLERL-------------------------------YEF- 634 (887)
T ss_pred --------chhcccc-cccc---ccccccccccccccHHHHHHHH-------------------------------hhc-
Confidence 1122211 0000 0000000000001122111111 110
Q ss_pred hcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCC---CCcccchh-hHH--HHHhhhhhhhhhcCcccc
Q psy11896 818 TKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGD---NHMVDSNE-ISF--ILAAHGFKQMCEKGCLSG 891 (1043)
Q Consensus 818 ~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~--~~~~~gf~~~~~~Gpl~~ 891 (1043)
.+ .+.... .+....|+||+...|||++.+... ++.+.++. +.. .+++.|||++|.+||||.
T Consensus 635 ek---------~~e~~~----~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~ 701 (887)
T KOG0467|consen 635 EK---------PREKLG----SFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCN 701 (887)
T ss_pred cc---------cHHHHH----HHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcccc
Confidence 00 000000 112567899999999999985332 23444432 111 369999999999999999
Q ss_pred ccccceEEEEecCccccCCCC---hhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEecc
Q psy11896 892 SRVAGVRMVLKDGDNHMVDSN---EISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGN 968 (1043)
Q Consensus 892 e~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~ 968 (1043)
||++|++|.++.+.-.+.++. .+|+++++|++||+||+..+||||.|||+|+|++..+++|+||.+|++|+|+|+++
T Consensus 702 Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsE 781 (887)
T KOG0467|consen 702 EPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSE 781 (887)
T ss_pred cCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhh
Confidence 999999999999766654442 27999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC--cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCH----------------------HHHHHHHHH
Q psy11896 969 EGKDD--WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALP----------------------EVQDRLVNE 1024 (1043)
Q Consensus 969 ~~~~~--~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~----------------------~~~~~~~~~ 1024 (1043)
++++| +|.|+|++||+|+|||++++|+.|||.|++||.||||+.++. +++.+.|+.
T Consensus 782 em~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~ArkYMda 861 (887)
T KOG0467|consen 782 EMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENIARKYMDA 861 (887)
T ss_pred hhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhHHHHHHHH
Confidence 99875 999999999999999999999999999999999999999987 477899999
Q ss_pred HHHhcCCch-------HHHhhhhhcC
Q psy11896 1025 YQEATNPQA-------AATQKKKKKN 1043 (1043)
Q Consensus 1025 ~~~~~~~~~-------~~~~~~~~~~ 1043 (1043)
.|+|||+.- |++|+-=|||
T Consensus 862 VRRRKGLfVEEkIVE~AEKQRTLkkn 887 (887)
T KOG0467|consen 862 VRRRKGLFVEEKIVEHAEKQRTLKKN 887 (887)
T ss_pred HHhhcCCchHHHHhhhHHhhcccccC
Confidence 999999974 4566665665
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.1e-75 Score=697.78 Aligned_cols=453 Identities=31% Similarity=0.492 Sum_probs=407.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
||||+|+||+|||||||+++|++.++.+...+.+.. +++|+.+.|++||+|+.+....+.|++++++|||||||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~-----~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~ 75 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE-----RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA 75 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee-----ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH
Confidence 699999999999999999999999888876554443 489999999999999999999999999999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeecc
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPI 358 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~ 358 (1043)
||..++.++++.+|++++|+|+.+|+..||+.+|..+...++|+++|+||||+..++++++++++.+.+...
T Consensus 76 DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~-------- 147 (594)
T TIGR01394 76 DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL-------- 147 (594)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh--------
Confidence 999999999999999999999999999999999999999999999999999998877777777766644310
Q ss_pred ccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHH
Q psy11896 359 GLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438 (1043)
Q Consensus 359 ~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~ 438 (1043)
.. ++
T Consensus 148 ----------------------------------------------------g~-~~----------------------- 151 (594)
T TIGR01394 148 ----------------------------------------------------GA-DD----------------------- 151 (594)
T ss_pred ----------------------------------------------------cc-cc-----------------------
Confidence 00 00
Q ss_pred hhhcCccEEEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEe
Q psy11896 439 STLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 508 (1043)
Q Consensus 439 ~~~~~~~~Pv~~gSa~~~~----------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 508 (1043)
...-+|++++||++|. |++.||++|.+++|+|... +++||+++||+
T Consensus 152 ---e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~---------------------~~~pl~~~V~~ 207 (594)
T TIGR01394 152 ---EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGD---------------------LDEPLQMLVTN 207 (594)
T ss_pred ---ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCC---------------------CCCCEEEEEEE
Confidence 0012589999999996 8999999999999999531 67899999999
Q ss_pred eeecCC-ccEEEEEEecCeecCCCEEEecCCC---cEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecC
Q psy11896 509 LEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTD 583 (1043)
Q Consensus 509 ~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~---~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~ 583 (1043)
++++++ |+++++||+||+|++||.|++.+.+ .+++|++|+.+.|.++.++++|.||||+++.|+ ++.+||||+ +
T Consensus 208 i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~-~ 286 (594)
T TIGR01394 208 LDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIA-D 286 (594)
T ss_pred EEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEe-C
Confidence 999999 9999999999999999999998763 257999999999999999999999999999999 899999999 6
Q ss_pred CCCcccccCCCCCCceEEEEEEeCCC---ccHHH------HHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHH
Q psy11896 584 KNNSISLESIYVADPVVSMSIKAVNN---KDRDN------FSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYA 654 (1043)
Q Consensus 584 ~~~~~~~~~~~~~~pv~~~~iep~~~---~d~~k------l~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~ 654 (1043)
...+..++++.+++|+++++++|++. .+..+ |.++|.++.++||+|+++.++++++++|+|+|||||+|++
T Consensus 287 ~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~ 366 (594)
T TIGR01394 287 PEVPEALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILI 366 (594)
T ss_pred CCccccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHH
Confidence 77778889999999999999999754 33333 9999999999999999999999999999999999999999
Q ss_pred HHHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHH
Q psy11896 655 QRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPA 734 (1043)
Q Consensus 655 ~rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~ 734 (1043)
++|+++ |+++.+++|+|+||| +.
T Consensus 367 e~lrre-g~e~~~~~P~V~yre-i~------------------------------------------------------- 389 (594)
T TIGR01394 367 ETMRRE-GFELQVGRPQVIYKE-ID------------------------------------------------------- 389 (594)
T ss_pred HHHhcc-CceEEEeCCEEEEEe-CC-------------------------------------------------------
Confidence 999999 999999999999999 51
Q ss_pred HHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchh
Q psy11896 735 IIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVL 814 (1043)
Q Consensus 735 i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~ 814 (1043)
| .
T Consensus 390 -----------g----------~--------------------------------------------------------- 391 (594)
T TIGR01394 390 -----------G----------K--------------------------------------------------------- 391 (594)
T ss_pred -----------C----------e---------------------------------------------------------
Confidence 0 0
Q ss_pred hhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccc
Q psy11896 815 NLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRV 894 (1043)
Q Consensus 815 ~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~ 894 (1043)
T Consensus 392 -------------------------------------------------------------------------------- 391 (594)
T TIGR01394 392 -------------------------------------------------------------------------------- 391 (594)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccC-CC
Q psy11896 895 AGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK-DD 973 (1043)
Q Consensus 895 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~ 973 (1043)
+||||+.++|.||++|+|+||++|++|||+|++++.. ++
T Consensus 392 ----------------------------------------llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~~ 431 (594)
T TIGR01394 392 ----------------------------------------KLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNG 431 (594)
T ss_pred ----------------------------------------EECCEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCCC
Confidence 4799999999999999999999999999999999985 46
Q ss_pred cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHHHH
Q psy11896 974 WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDR 1020 (1043)
Q Consensus 974 ~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~ 1020 (1043)
+..|+|.+|++|++||+++||+.|+|+|+|.+.|+||+++|++++++
T Consensus 432 ~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~~~ 478 (594)
T TIGR01394 432 RTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIETR 478 (594)
T ss_pred EEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCCCC
Confidence 89999999999999999999999999999999999999999987653
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=4.7e-74 Score=681.85 Aligned_cols=453 Identities=32% Similarity=0.479 Sum_probs=406.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
++||||+|+||+|+|||||+++|++.++.+...+... .+++|+.+.|+++|+|+......+.|+++.+++|||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~-----~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG 77 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ-----ERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPG 77 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccc-----eeeeccccccccCceEEEEEEEEEecCCEEEEEEECCC
Confidence 4699999999999999999999998888776533222 26899999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.+|..++.++++.+|++++|+|+.+|+..||+.+|+.+...++|.++|+||+|+.++++++.++++.+.+..-
T Consensus 78 ~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l------ 151 (607)
T PRK10218 78 HADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL------ 151 (607)
T ss_pred cchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999888888888877755310
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
+ +.+
T Consensus 152 ---------------------------------------------------------~------~~~------------- 155 (607)
T PRK10218 152 ---------------------------------------------------------D------ATD------------- 155 (607)
T ss_pred ---------------------------------------------------------C------ccc-------------
Confidence 0 000
Q ss_pred HHhhhcCccEEEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEE
Q psy11896 437 RRSTLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALA 506 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~----------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 506 (1043)
...-+||+++||++|. |+..||++|.+++|+|.. ++++||.++|
T Consensus 156 -----~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~---------------------~~~~Pl~~~V 209 (607)
T PRK10218 156 -----EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDV---------------------DLDGPFQMQI 209 (607)
T ss_pred -----cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCC---------------------CCCCCeEEEE
Confidence 0012699999999998 699999999999999952 1678999999
Q ss_pred EeeeecCC-ccEEEEEEecCeecCCCEEEecCC-Cc--EEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEe
Q psy11896 507 FKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT-DK--KVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFV 581 (1043)
Q Consensus 507 ~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~-~~--~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~ 581 (1043)
||++++++ |+++++||+||+|++||.|++.+. ++ +++|++||.+.|.++.++++|.||||+++.|+ ++.+||||+
T Consensus 210 ~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~ 289 (607)
T PRK10218 210 SQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVC 289 (607)
T ss_pred EeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEe
Confidence 99999999 999999999999999999999876 43 68999999999999999999999999999999 899999999
Q ss_pred cCCCCcccccCCCCCCceEEEEEEeCC---CccHHHHHH---HHHHHhc---CCCeeEEEEcCCCCcEEEEechhhHHHH
Q psy11896 582 TDKNNSISLESIYVADPVVSMSIKAVN---NKDRDNFSK---AVQRFTK---EDPTFHFFYDPESKETLVSGMGELHLEI 652 (1043)
Q Consensus 582 ~~~~~~~~~~~~~~~~pv~~~~iep~~---~~d~~kl~~---~L~~l~~---eDpsl~~~~~~etge~il~g~GelHlei 652 (1043)
+...+..++.+++++|++++++.|++ ..|..|+.. ++.+|.+ +||+|+++.++++++++|+|+|||||+|
T Consensus 290 -~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~i 368 (607)
T PRK10218 290 -DTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSV 368 (607)
T ss_pred -cCCCcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHH
Confidence 56667778899999999999999999 778888754 5566665 9999999999999999999999999999
Q ss_pred HHHHHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchH
Q psy11896 653 YAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732 (1043)
Q Consensus 653 ~~~rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~ 732 (1043)
++++|+++ |+|+.+++|+|+|||| + |
T Consensus 369 l~e~lrre-g~e~~~~~P~V~yret-------~-------g--------------------------------------- 394 (607)
T PRK10218 369 LIENMRRE-GFELAVSRPKVIFREI-------D-------G--------------------------------------- 394 (607)
T ss_pred HHHHHHhC-CceEEEeCCEEEEEEE-------C-------C---------------------------------------
Confidence 99999999 9999999999999998 0 0
Q ss_pred HHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccc
Q psy11896 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGS 812 (1043)
Q Consensus 733 ~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~ 812 (1043)
T Consensus 395 -------------------------------------------------------------------------------- 394 (607)
T PRK10218 395 -------------------------------------------------------------------------------- 394 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccc
Q psy11896 813 VLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGS 892 (1043)
Q Consensus 813 v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e 892 (1043)
T Consensus 395 -------------------------------------------------------------------------------- 394 (607)
T PRK10218 395 -------------------------------------------------------------------------------- 394 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccC-
Q psy11896 893 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK- 971 (1043)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~- 971 (1043)
+.+|||+.++|.||++|+|+||++|++|||++++++..
T Consensus 395 -----------------------------------------~klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~ 433 (607)
T PRK10218 395 -----------------------------------------RKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDG 433 (607)
T ss_pred -----------------------------------------EEeCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECC
Confidence 01499999999999999999999999999999999985
Q ss_pred CCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC-HHHH
Q psy11896 972 DDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL-PEVQ 1018 (1043)
Q Consensus 972 ~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~-~~~~ 1018 (1043)
+++..|+|.+|++|++||+++|||+|+|+|.|.+.|+||+++| +++.
T Consensus 434 ~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~~ 481 (607)
T PRK10218 434 KGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVG 481 (607)
T ss_pred CCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCCC
Confidence 5689999999999999999999999999999999999999999 6643
No 18
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=7.4e-74 Score=685.27 Aligned_cols=461 Identities=32% Similarity=0.522 Sum_probs=400.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-----Cee
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-----DHN 268 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~ 268 (1043)
++.++||||+|+||+|||||||+++|++.++.+.+.+ ...+++|+++.|++||+|+++....+.|+ ++.
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~------~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~ 75 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE------MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYI 75 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc------cccccccCchHHhhcCCcccccEEEEEEEccCCCcEE
Confidence 4567899999999999999999999999888776531 12468999999999999999999989886 688
Q ss_pred EEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhC
Q psy11896 269 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348 (1043)
Q Consensus 269 i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~ 348 (1043)
++|||||||.+|..++.++++.+|++|+|+|+.+|++.+|...|..+...++|+++|+||+|+..+++++..+++.+.++
T Consensus 76 lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg 155 (600)
T PRK05433 76 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIG 155 (600)
T ss_pred EEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998889999999999999976655444444433222
Q ss_pred CCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCC
Q psy11896 349 HNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSIS 428 (1043)
Q Consensus 349 ~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~ 428 (1043)
..
T Consensus 156 ~~------------------------------------------------------------------------------ 157 (600)
T PRK05433 156 ID------------------------------------------------------------------------------ 157 (600)
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred HHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEe
Q psy11896 429 EDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 508 (1043)
Q Consensus 429 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 508 (1043)
..+++++||++|.|++.|+++|.+.+|+|... +++|+.++|||
T Consensus 158 ----------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~---------------------~~~pl~~~Vfd 200 (600)
T PRK05433 158 ----------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGD---------------------PDAPLKALIFD 200 (600)
T ss_pred ----------------cceEEEEecCCCCCHHHHHHHHHHhCccccCC---------------------CCCCceEEEEE
Confidence 01378899999999999999999999999532 67899999999
Q ss_pred eeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc-cC----ccccCcEEec
Q psy11896 509 LEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-GV----DCASGDTFVT 582 (1043)
Q Consensus 509 ~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-gl----~~~~Gdtl~~ 582 (1043)
+++|++ |.++++||++|+|++||.|++.+++..++|.+|+.+.+ +..+++++.||||+.+. |+ ++++||||+
T Consensus 201 ~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~- 278 (600)
T PRK05433 201 SWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTIT- 278 (600)
T ss_pred EEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEE-
Confidence 999998 99999999999999999999999999999999996655 88899999999998875 44 678999998
Q ss_pred CCCCc--ccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEe-----chhhHHHHHHH
Q psy11896 583 DKNNS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQ 655 (1043)
Q Consensus 583 ~~~~~--~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g-----~GelHlei~~~ 655 (1043)
+...+ ..+++++.|+|+++++++|.+.+|.++|.++|++|..|||||+++ +||++.++.| ||+|||||+++
T Consensus 279 ~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~e 356 (600)
T PRK05433 279 LAKNPAEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQE 356 (600)
T ss_pred CCCCccccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHH
Confidence 44444 468889999999999999999999999999999999999999986 7899999999 99999999999
Q ss_pred HHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHH
Q psy11896 656 RMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAI 735 (1043)
Q Consensus 656 rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i 735 (1043)
||+++||+++.+++|.|+||||+++. ..+.|.|
T Consensus 357 rL~~e~~~~v~~~~P~V~Yreti~~g--------------------------------~~~~~~~--------------- 389 (600)
T PRK05433 357 RLEREFDLDLITTAPSVVYEVTLTDG--------------------------------EVIEVDN--------------- 389 (600)
T ss_pred HHHHhhCceEEEecCEEEEEEEEeCC--------------------------------cEEEEEC---------------
Confidence 99999999999999999999999751 0122221
Q ss_pred HHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhh
Q psy11896 736 IKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLN 815 (1043)
Q Consensus 736 ~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~ 815 (1043)
| .|+|
T Consensus 390 -----------p-~~~p--------------------------------------------------------------- 394 (600)
T PRK05433 390 -----------P-SKLP--------------------------------------------------------------- 394 (600)
T ss_pred -----------c-ccCC---------------------------------------------------------------
Confidence 1 1221
Q ss_pred hhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCcccccccc
Q psy11896 816 LVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVA 895 (1043)
Q Consensus 816 ~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~ 895 (1043)
T Consensus 395 -------------------------------------------------------------------------------- 394 (600)
T PRK05433 395 -------------------------------------------------------------------------------- 394 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcE
Q psy11896 896 GVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWV 975 (1043)
Q Consensus 896 ~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 975 (1043)
|+++. -.|||||+.++|.+|++|+|+||+++++|||++++++..++..
T Consensus 395 --------------ds~~~------------------~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~ 442 (600)
T PRK05433 395 --------------DPGKI------------------EEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLGNRV 442 (600)
T ss_pred --------------Ccccc------------------ceEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecCCeE
Confidence 01100 1589999999999999999999999999999999999977789
Q ss_pred EEEEEechhhh-cCchHHHHhhcCCceEEEeEecccccC
Q psy11896 976 TIYAEIPLNDM-FGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 976 ~i~a~~P~~e~-~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
.|+|.+|++|+ ++|.++|||+|+|.|+|.+.|+||++.
T Consensus 443 ~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 443 ELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES 481 (600)
T ss_pred EEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccc
Confidence 99999999999 999999999999999999999999976
No 19
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=2.3e-73 Score=670.01 Aligned_cols=450 Identities=30% Similarity=0.510 Sum_probs=406.6
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCc-cccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKD-NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
...++|||+|+||+|+|||||+++|++.++.+...|.++++. ....++|+++.|++||+|+..+...+.|+++.+++||
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 346789999999999999999999999999999988887543 1234689999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.||..++.++++.+|++|+|+|+.+|+..+|+.+|+++...++|+++|+||+|+.++++.+.++++++.++..+.|
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p 165 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAP 165 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
+++|++.+..|+|++|+++++++.|....|.. ..+.+.+++.||+++++|+++..+ +++.
T Consensus 166 ~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~ 225 (526)
T PRK00741 166 ITWPIGMGKRFKGVYDLYNDEVELYQPGEGHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLR 225 (526)
T ss_pred EEeccccCCceeEEEEeecceeeecccCCCCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHH
Confidence 99999999999999999999999996433321 123457788999999999998754 5566
Q ss_pred HHH-----------HHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCc
Q psy11896 434 KAI-----------RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPF 502 (1043)
Q Consensus 434 ~~l-----------~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 502 (1043)
..+ ++++..+.++|||||||++|.||+.|||+|++++|+|.++... ...+.+ .+.|+
T Consensus 226 ~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~---------~~~~~~---~~~~~ 293 (526)
T PRK00741 226 EELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD---------EREVEP---TEEKF 293 (526)
T ss_pred HHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc---------ceeecC---CCCce
Confidence 666 8899999999999999999999999999999999999764321 011222 35679
Q ss_pred EEEEEeeee---cCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccC
Q psy11896 503 IALAFKLEA---GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASG 577 (1043)
Q Consensus 503 ~~~V~K~~~---d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~G 577 (1043)
+|+|||+.+ +++ |+++|+|||||+|++|+.|+|.++++++++++++.++|++++++++|.||||+++.|+ ++++|
T Consensus 294 ~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~G 373 (526)
T PRK00741 294 SGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIG 373 (526)
T ss_pred EEEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccC
Confidence 999999985 345 9999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred cEEecCCCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHH
Q psy11896 578 DTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRM 657 (1043)
Q Consensus 578 dtl~~~~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL 657 (1043)
|||+ +.. +..++++++|+|+++++|+|+++.|.+||.+||++|.+||| +++.++++|||++|+|||+|||||+++||
T Consensus 374 DTL~-~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL 450 (526)
T PRK00741 374 DTFT-QGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRL 450 (526)
T ss_pred CCcc-CCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHH
Confidence 9998 443 67788999999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred HhhcCccEEecCCeeeEEEeee
Q psy11896 658 EREYNCPVVLGKPKVAFKETLV 679 (1043)
Q Consensus 658 ~~~~~v~i~~~~p~V~yrEti~ 679 (1043)
+++||+++.+++|.|++-.-|.
T Consensus 451 ~~ey~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 451 KNEYNVEAIYEPVGVATARWVE 472 (526)
T ss_pred HHHhCCEEEEecCCccEEEEEe
Confidence 9999999999999999988775
No 20
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=4.5e-73 Score=677.86 Aligned_cols=456 Identities=32% Similarity=0.542 Sum_probs=395.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--C---eeEEEE
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--D---HNINII 272 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~---~~i~li 272 (1043)
+||||+++||+|+|||||+++|++.++.+.... .+ .+++|+++.|+++|+|+......+.|+ + +.++||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~---~~---~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~li 75 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE---MR---EQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLI 75 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc---cc---ccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEE
Confidence 589999999999999999999999888776421 11 468999999999999999999888885 3 789999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCce
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAA 352 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~ 352 (1043)
|||||.+|..++.++++.+|++|+|+|+.+|++.+|...|..+...++|+++|+||+|+...+.++..+++.+.++.
T Consensus 76 DTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~--- 152 (595)
T TIGR01393 76 DTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGL--- 152 (595)
T ss_pred ECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC---
Confidence 99999999999999999999999999999999999999998888889999999999998765544433433332221
Q ss_pred eeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHH
Q psy11896 353 FLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDI 432 (1043)
Q Consensus 353 ~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l 432 (1043)
T Consensus 153 -------------------------------------------------------------------------------- 152 (595)
T TIGR01393 153 -------------------------------------------------------------------------------- 152 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeec
Q psy11896 433 KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG 512 (1043)
Q Consensus 433 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d 512 (1043)
...+++++||++|.|++.|++.|.+++|+|... +++|+.++||++++|
T Consensus 153 -----------~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~---------------------~~~pl~~~V~~~~~d 200 (595)
T TIGR01393 153 -----------DASEAILASAKTGIGIEEILEAIVKRVPPPKGD---------------------PDAPLKALIFDSHYD 200 (595)
T ss_pred -----------CcceEEEeeccCCCCHHHHHHHHHHhCCCCCCC---------------------CCCCeEEEEEEEEEe
Confidence 011478899999999999999999999999532 678999999999999
Q ss_pred CC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc-cC----ccccCcEEecCCCC
Q psy11896 513 KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-GV----DCASGDTFVTDKNN 586 (1043)
Q Consensus 513 ~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-gl----~~~~Gdtl~~~~~~ 586 (1043)
++ |.++++||++|+|++||+|++.+++..++|.+|+.+.+.. .+++++.||||+.+. |+ ++++||||+ +..+
T Consensus 201 ~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~-~~~~ 278 (595)
T TIGR01393 201 NYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTIT-HVKN 278 (595)
T ss_pred CCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEE-CCCC
Confidence 98 9999999999999999999999999899999999777665 899999999998774 43 678999998 4444
Q ss_pred c--ccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEe-----chhhHHHHHHHHHHh
Q psy11896 587 S--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMER 659 (1043)
Q Consensus 587 ~--~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g-----~GelHlei~~~rL~~ 659 (1043)
+ .+++++..++|+++++++|.+.+|.++|.++|++|..|||||+++ +||++.++.| +|+|||||+++||++
T Consensus 279 ~~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~g~lG~lHlei~~erL~r 356 (595)
T TIGR01393 279 PAKEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE--PESSPALGFGFRCGFLGLLHMEIIQERLER 356 (595)
T ss_pred ccccCCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEE--ecCCcccccccEEeeeeHHHHHHHHHHHHH
Confidence 4 367889999999999999999999999999999999999999987 5899988885 999999999999999
Q ss_pred hcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHH
Q psy11896 660 EYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGF 739 (1043)
Q Consensus 660 ~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~ 739 (1043)
+||+++.+++|+|+||||++.. + .+.|.|
T Consensus 357 e~~~~v~~~~P~V~Yreti~~g---------------~-----------------~~~~~~------------------- 385 (595)
T TIGR01393 357 EFNLDLITTAPSVIYRVYLTNG---------------E-----------------VIEVDN------------------- 385 (595)
T ss_pred HhCCeeEEecCEEEEEEEecCC---------------c-----------------EEEEEC-------------------
Confidence 9999999999999999998731 1 122221
Q ss_pred HHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhc
Q psy11896 740 KQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTK 819 (1043)
Q Consensus 740 ~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~ 819 (1043)
| .|+|+.|.
T Consensus 386 -------p-~~~p~~~~--------------------------------------------------------------- 394 (595)
T TIGR01393 386 -------P-SDLPDPGK--------------------------------------------------------------- 394 (595)
T ss_pred -------c-ccCCCccc---------------------------------------------------------------
Confidence 1 24443220
Q ss_pred ccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEE
Q psy11896 820 RHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRM 899 (1043)
Q Consensus 820 rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~ 899 (1043)
T Consensus 395 -------------------------------------------------------------------------------- 394 (595)
T TIGR01393 395 -------------------------------------------------------------------------------- 394 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCC-CcEEEE
Q psy11896 900 VLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIY 978 (1043)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~ 978 (1043)
-|.|||||+.++|.+|++|+|+||+++++|||++++++..+ +...|+
T Consensus 395 --------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~i~ 442 (595)
T TIGR01393 395 --------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELI 442 (595)
T ss_pred --------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEEEE
Confidence 16789999999999999999999999999999999999854 589999
Q ss_pred EEechhhh-cCchHHHHhhcCCceEEEeEeccccc
Q psy11896 979 AEIPLNDM-FGFAGDLRSSTQGKGEFSMDYSRYSP 1012 (1043)
Q Consensus 979 a~~P~~e~-~g~~~~lr~~t~G~~~~~~~f~~~~~ 1012 (1043)
|.+|++|+ ++|.++|||+|+|.|+|.++|+||++
T Consensus 443 ~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~ 477 (595)
T TIGR01393 443 YEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRP 477 (595)
T ss_pred EEeccchhhhchhHHhhhhcCCEEEEEEEECCccc
Confidence 99999997 99999999999999999999999997
No 21
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.7e-70 Score=645.95 Aligned_cols=448 Identities=29% Similarity=0.479 Sum_probs=395.4
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecC-CccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~-~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
...++|||+|+||+|+|||||+++|++..+.+...|.+++ +....+++|+++.|++||+|+.++...+.|+++.+++||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 4467899999999999999999999999999999888873 322346799999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.+|..++.++++.+|++|+|+|+..|+..++..+|+.+...++|+++|+||+|+..+++.+.++.+++.++..+.+
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~ 166 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAP 166 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEee------cCchh----HHHHHHHHHHHHHHHHhcCChHHHHHHhc
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIE------EIPAD----LKKEAESKRQELIEHVAEGDEILGEMFLE 423 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~------~i~~~----~~~~~~~~r~~l~e~l~e~dd~l~~~~l~ 423 (1043)
.++|++.+..|.|++|++.+.+++|....|...... +.|.. ..+.++++|+++ |.+.+.|+++
T Consensus 167 ~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~~------ 239 (527)
T TIGR00503 167 ITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNEF------ 239 (527)
T ss_pred EEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhcccc------
Confidence 999999999999999999999999965434433222 12211 123456677777 7776655432
Q ss_pred cCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcE
Q psy11896 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFI 503 (1043)
Q Consensus 424 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 503 (1043)
+ +++++.+.++|||||||++|.||+.|||+|++++|+|.++... ...+.+ .++|++
T Consensus 240 ----~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~---------~~~~~~---~~~~~~ 295 (527)
T TIGR00503 240 ----D--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD---------TRTVEP---TEEKFS 295 (527)
T ss_pred ----C--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC---------ceecCC---CCCCee
Confidence 2 3567789999999999999999999999999999999754311 112223 367899
Q ss_pred EEEEeeee--cC-C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCc
Q psy11896 504 ALAFKLEA--GK-F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGD 578 (1043)
Q Consensus 504 ~~V~K~~~--d~-~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gd 578 (1043)
++|||+.+ |+ + |+++|+|||||+|++|++|++.++++++++++++.++|++++++++|.||||+++.|+ ++++||
T Consensus 296 ~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GD 375 (527)
T TIGR00503 296 GFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGD 375 (527)
T ss_pred EEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCC
Confidence 99999998 74 5 9999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred EEecCCCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHH
Q psy11896 579 TFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 658 (1043)
Q Consensus 579 tl~~~~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~ 658 (1043)
||+ +. .+..++++++|+|+++++|+|+++.|.+||.+||++|.+||| +++.++++|+|++|+|||+|||||+++||+
T Consensus 376 tl~-~~-~~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~ 452 (527)
T TIGR00503 376 TFT-QG-EKIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLK 452 (527)
T ss_pred Eec-CC-CceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHH
Confidence 999 43 367788899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred hhcCccEEecCCeeeEEE
Q psy11896 659 REYNCPVVLGKPKVAFKE 676 (1043)
Q Consensus 659 ~~~~v~i~~~~p~V~yrE 676 (1043)
++||+++.+++|.|+.-=
T Consensus 453 ~ey~v~v~~~~~~v~~~r 470 (527)
T TIGR00503 453 EEYNVEARYEPVNVATAR 470 (527)
T ss_pred HHhCCeEEEeCCCceEEE
Confidence 999999999999998543
No 22
>KOG0462|consensus
Probab=100.00 E-value=1.5e-64 Score=556.31 Aligned_cols=365 Identities=31% Similarity=0.490 Sum_probs=319.2
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC---eeE
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD---HNI 269 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i 269 (1043)
..|.+++||++||+|+|||||||+++|+..+|.+.+ .....+++|.++.|++||||+++...++.|++ +.+
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~------~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylL 127 (650)
T KOG0462|consen 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDN------NIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLL 127 (650)
T ss_pred cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCC------CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEE
Confidence 456789999999999999999999999999986654 23335689999999999999999999999998 999
Q ss_pred EEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCC
Q psy11896 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGH 349 (1043)
Q Consensus 270 ~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~ 349 (1043)
||||||||+||+.|+.+.+..|||+++||||.+|+++||...+..|.+.++.+|.|+||+|++.++++.+..++.+.|..
T Consensus 128 NLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~ 207 (650)
T KOG0462|consen 128 NLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDI 207 (650)
T ss_pred EeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888876653
Q ss_pred CceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCH
Q psy11896 350 NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISE 429 (1043)
Q Consensus 350 ~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~ 429 (1043)
...
T Consensus 208 ~~~----------------------------------------------------------------------------- 210 (650)
T KOG0462|consen 208 PPA----------------------------------------------------------------------------- 210 (650)
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred HHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEee
Q psy11896 430 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKL 509 (1043)
Q Consensus 430 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 509 (1043)
+++.+||++|.|+..+|++|++.+|+|... .++||.+++|.+
T Consensus 211 -----------------~~i~vSAK~G~~v~~lL~AII~rVPpP~~~---------------------~d~plr~Lifds 252 (650)
T KOG0462|consen 211 -----------------EVIYVSAKTGLNVEELLEAIIRRVPPPKGI---------------------RDAPLRMLIFDS 252 (650)
T ss_pred -----------------ceEEEEeccCccHHHHHHHHHhhCCCCCCC---------------------CCcchHHHhhhh
Confidence 467889999999999999999999999753 689999999999
Q ss_pred eecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCC--eeecCeecCCCEEEEcc-C-ccccCcEEecCC
Q psy11896 510 EAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE--MEDVEEVLAGDIFALFG-V-DCASGDTFVTDK 584 (1043)
Q Consensus 510 ~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~--~~~v~~a~aGdIv~i~g-l-~~~~Gdtl~~~~ 584 (1043)
+.|++ |.|+++||..|.+++||+|....+++...+..+-+|.... ..+++...+|+|++-.+ + +...|||+++..
T Consensus 253 ~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 253 EYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred hhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecc
Confidence 99999 9999999999999999999999888777777666555433 34455566677776666 4 778999998422
Q ss_pred --CCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCc----EEEEechhhHHHHHHHHHH
Q psy11896 585 --NNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKE----TLVSGMGELHLEIYAQRME 658 (1043)
Q Consensus 585 --~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge----~il~g~GelHlei~~~rL~ 658 (1043)
.....++.++-..|++++...|.+.+|.+.|.+++.+|..+|+++.+..+ .++. +.+.++|.|||+|+.+||+
T Consensus 333 ~~~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~-~s~aLg~gwr~gflG~LHm~Vf~erle 411 (650)
T KOG0462|consen 333 VTKAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKE-SSGALGQGWRLGFLGLLHMEVFIERLE 411 (650)
T ss_pred cCcccCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeec-CCcccccceEeeccceeeHHHHHHHHH
Confidence 23455777788899999999999999999999999999999999988763 4442 5789999999999999999
Q ss_pred hhcCccEEecCCeeeEEEeee
Q psy11896 659 REYNCPVVLGKPKVAFKETLV 679 (1043)
Q Consensus 659 ~~~~v~i~~~~p~V~yrEti~ 679 (1043)
+|||.++.+++|.|+||--..
T Consensus 412 ~Eyg~elivt~PtV~Yr~~~~ 432 (650)
T KOG0462|consen 412 REYGAELIVTPPTVPYRVVYS 432 (650)
T ss_pred HhcCceeeecCCcceEEEEec
Confidence 999999999999999996543
No 23
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8e-63 Score=533.64 Aligned_cols=364 Identities=33% Similarity=0.550 Sum_probs=326.9
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-----Ce
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-----DH 267 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~ 267 (1043)
.++.++|||++|++|.|||||||.++|+..++.++. ...-..++|+++.|++||||++.....+.|+ .|
T Consensus 3 ~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~------Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y 76 (603)
T COG0481 3 FTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSE------REMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETY 76 (603)
T ss_pred ccchhhccceEEEEEecCCcchHHHHHHHHhcCcCh------HHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEE
Confidence 356778999999999999999999999999887765 2333568999999999999999999998885 38
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHh
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKV 347 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l 347 (1043)
.+||||||||+||+-|+.++|..|.|+++||||+.|++.||..-.-+|...++-++-|+||+|++.++++.+.+++.+.+
T Consensus 77 ~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~i 156 (603)
T COG0481 77 VLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDII 156 (603)
T ss_pred EEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCC
Q psy11896 348 GHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSI 427 (1043)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~ 427 (1043)
|....
T Consensus 157 Gid~~--------------------------------------------------------------------------- 161 (603)
T COG0481 157 GIDAS--------------------------------------------------------------------------- 161 (603)
T ss_pred CCCcc---------------------------------------------------------------------------
Confidence 75321
Q ss_pred CHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 428 SEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 428 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
-.+.+||++|.||+++|++|++.+|+|... +++|+.|++|
T Consensus 162 -------------------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~---------------------~~~pLkALif 201 (603)
T COG0481 162 -------------------DAVLVSAKTGIGIEDVLEAIVEKIPPPKGD---------------------PDAPLKALIF 201 (603)
T ss_pred -------------------hheeEecccCCCHHHHHHHHHhhCCCCCCC---------------------CCCcceEEEE
Confidence 124579999999999999999999999642 7899999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE-ccC----ccccCcEEe
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL-FGV----DCASGDTFV 581 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i-~gl----~~~~Gdtl~ 581 (1043)
..+.|++ |.++++||+.|++++||++....++++..|..+..+.. ...+.+++.||+++-+ +|+ |+..|||++
T Consensus 202 DS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT 280 (603)
T COG0481 202 DSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTIT 280 (603)
T ss_pred eccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEe
Confidence 9999999 99999999999999999999999999999999988877 7778899999999864 455 778999998
Q ss_pred cCC-CCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEe-----chhhHHHHHHH
Q psy11896 582 TDK-NNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQ 655 (1043)
Q Consensus 582 ~~~-~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g-----~GelHlei~~~ 655 (1043)
... ....++++++-..|++++.+.|.+..|.+.|.++|.+|..+|.+|.++ +||++.+-.| +|-|||||+.+
T Consensus 281 ~~~~p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E--~EtS~ALGfGfRcGFLGlLHmeiiqE 358 (603)
T COG0481 281 LASNPATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQE 358 (603)
T ss_pred ccCCCccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeec--cccchhccCceeehhhhHHHHHHHHH
Confidence 322 233568888889999999999999999999999999999999999876 6888887666 79999999999
Q ss_pred HHHhhcCccEEecCCeeeEEEeeec
Q psy11896 656 RMEREYNCPVVLGKPKVAFKETLVQ 680 (1043)
Q Consensus 656 rL~~~~~v~i~~~~p~V~yrEti~~ 680 (1043)
||+|||++++....|.|.|+-..+.
T Consensus 359 RLeREf~ldlI~TaPsV~Y~v~~~~ 383 (603)
T COG0481 359 RLEREFDLDLITTAPSVVYKVELTD 383 (603)
T ss_pred HHHHhhCcceEecCCceEEEEEEcC
Confidence 9999999999999999999977653
No 24
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-62 Score=527.22 Aligned_cols=454 Identities=31% Similarity=0.484 Sum_probs=401.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
..+|||||++|+|||||||++.|+.+++.......+.. +.||+...|++|||||-+....+.|++++||++||||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~E-----RvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPG 77 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAE-----RVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPG 77 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhh-----hhcCccchhhhcCcEEEeccceeecCCeEEEEecCCC
Confidence 45899999999999999999999999999887655544 4899999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.||.+|+++.+...|+++++|||.+|..+||+.+++.|.+.+++.|+|+||+|++.+.++++++++.+.|-
T Consensus 78 HADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~-------- 149 (603)
T COG1217 78 HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFV-------- 149 (603)
T ss_pred cCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999998887765432
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
.|...|+.
T Consensus 150 ----------------------------------------------------~L~A~deQ-------------------- 157 (603)
T COG1217 150 ----------------------------------------------------ELGATDEQ-------------------- 157 (603)
T ss_pred ----------------------------------------------------HhCCChhh--------------------
Confidence 11111111
Q ss_pred HHhhhcCccEEEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEE
Q psy11896 437 RRSTLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALA 506 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~----------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 506 (1043)
--+|++..||..|. .+.+|+++|.+++|+|... .++||.++|
T Consensus 158 -------LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~---------------------~d~PlQ~qv 209 (603)
T COG1217 158 -------LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGD---------------------LDEPLQMQV 209 (603)
T ss_pred -------CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCC---------------------CCCCeEEEE
Confidence 12477777776654 4689999999999999632 789999999
Q ss_pred EeeeecCC-ccEEEEEEecCeecCCCEEEecCCC---cEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEe
Q psy11896 507 FKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFV 581 (1043)
Q Consensus 507 ~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~---~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~ 581 (1043)
+...++++ |+|..+||++|++|+||.|.....+ ...||++++-+.|-++.++++|.||||++|+|+ +...|||+|
T Consensus 210 t~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~ 289 (603)
T COG1217 210 TQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTIC 289 (603)
T ss_pred EeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCccccccccccc
Confidence 99999999 9999999999999999999887644 456899999999999999999999999999999 889999999
Q ss_pred cCCCCcccccCCCCCCceEEEEEEeCCCc----c-----HHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHH
Q psy11896 582 TDKNNSISLESIYVADPVVSMSIKAVNNK----D-----RDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEI 652 (1043)
Q Consensus 582 ~~~~~~~~~~~~~~~~pv~~~~iep~~~~----d-----~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei 652 (1043)
+++.+..++.+.+.+|.+++.+-.++.- + -.++.+.|.+=...+-+|+++-.++-..+.++|.|||||.|
T Consensus 290 -d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsI 368 (603)
T COG1217 290 -DPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSI 368 (603)
T ss_pred -CCCCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHH
Confidence 8888889999999999999999876642 2 23678888888888999999876666889999999999999
Q ss_pred HHHHHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchH
Q psy11896 653 YAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFL 732 (1043)
Q Consensus 653 ~~~rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~ 732 (1043)
+++-|||| |.|+.+|.|+|.||| +-
T Consensus 369 LiE~MRRE-GfEl~VsrP~Vi~ke-id----------------------------------------------------- 393 (603)
T COG1217 369 LIENMRRE-GFELQVSRPEVIIKE-ID----------------------------------------------------- 393 (603)
T ss_pred HHHHhhhc-ceEEEecCceEEEEe-cC-----------------------------------------------------
Confidence 99999999 999999999999998 21
Q ss_pred HHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccc
Q psy11896 733 PAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGS 812 (1043)
Q Consensus 733 ~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~ 812 (1043)
|.
T Consensus 394 -------------G~----------------------------------------------------------------- 395 (603)
T COG1217 394 -------------GV----------------------------------------------------------------- 395 (603)
T ss_pred -------------Cc-----------------------------------------------------------------
Confidence 10
Q ss_pred hhhhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccc
Q psy11896 813 VLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGS 892 (1043)
Q Consensus 813 v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e 892 (1043)
T Consensus 396 -------------------------------------------------------------------------------- 395 (603)
T COG1217 396 -------------------------------------------------------------------------------- 395 (603)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCC
Q psy11896 893 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 972 (1043)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~ 972 (1043)
..||+-.+.|.||+++.|.|+..|..|+|...+|.+.+
T Consensus 396 ------------------------------------------~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g 433 (603)
T COG1217 396 ------------------------------------------KCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDG 433 (603)
T ss_pred ------------------------------------------CcCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCC
Confidence 13777788999999999999999999999999999875
Q ss_pred -CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHHH
Q psy11896 973 -DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQD 1019 (1043)
Q Consensus 973 -~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~ 1019 (1043)
|+..+...+|..-..||.+++-++|+|.|.....|+||+++.+++..
T Consensus 434 ~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i~~ 481 (603)
T COG1217 434 KGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEIGG 481 (603)
T ss_pred CCeEEEEEEccCcceeccchheeeccccceeeeecccccccccccccc
Confidence 69999999999999999999999999999999999999999987643
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-61 Score=515.42 Aligned_cols=448 Identities=30% Similarity=0.519 Sum_probs=376.3
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCc-cccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKD-NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
..+.|++|||.|+|+|||||++.|+.+.+.|...|.+.+.. .-.+.+|+++.|++|||++.++...|+|+++.+||+||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 45679999999999999999999999999999999887653 34567999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
|||.||+.++.+.|.++|.||+||||..|+++||+.+++.|+.+++|++-||||||+...++-+.++++.+.|+..+.|+
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pi 168 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPI 168 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCe-eE---eecCc-hhHHHHH-HHHHHHHHHHHhcCChHHHHHHhccCCCC
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDN-LR---IEEIP-ADLKKEA-ESKRQELIEHVAEGDEILGEMFLEEKSIS 428 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~-~~---~~~i~-~~~~~~~-~~~r~~l~e~l~e~dd~l~~~~l~~~~~~ 428 (1043)
.|||+.+..|+|+.++.+..-..|.+..+.. .. ...+. ++..... ...++.+.|.+ +|+..- ..+++
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~-----EL~~~a--~~~Fd 241 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREEL-----ELVQGA--GNEFD 241 (528)
T ss_pred cccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHH-----HHHHhh--ccccC
Confidence 9999999999999999998888887643211 11 11111 1111111 11222222221 111000 01122
Q ss_pred HHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEe
Q psy11896 429 EDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 508 (1043)
Q Consensus 429 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 508 (1043)
.++++.+...|||+|||++|.||+.+|++++++.|+|..++... -.+++ .+..+.+||||
T Consensus 242 --------~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~---------~~v~p---~e~kfsGFVFK 301 (528)
T COG4108 242 --------LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT---------REVEP---TEDKFSGFVFK 301 (528)
T ss_pred --------HHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc---------CcccC---CCCccceEEEE
Confidence 23456788999999999999999999999999999998664220 12233 24459999999
Q ss_pred eeec--CC--ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecC
Q psy11896 509 LEAG--KF--GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTD 583 (1043)
Q Consensus 509 ~~~d--~~--G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~ 583 (1043)
+... |. -+|||+||.||.+..|+++...++|+..+++.-..+++++++.+++|.||||++|..- ..+.|||++ .
T Consensus 302 IQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t-~ 380 (528)
T COG4108 302 IQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFT-E 380 (528)
T ss_pred EEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceee-c
Confidence 9874 33 7899999999999999999999999999999999999999999999999999999877 678999999 3
Q ss_pred CCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCc
Q psy11896 584 KNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 663 (1043)
Q Consensus 584 ~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v 663 (1043)
+ ..+.|++++...|-++..|..+++....+|.+||+.|.+|-. +++.....+++.+|...|.||+||+.+||+.||++
T Consensus 381 G-e~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~v 458 (528)
T COG4108 381 G-EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNV 458 (528)
T ss_pred C-ceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhhhCC
Confidence 3 678899999999999999999999999999999999999987 46666677899999999999999999999999999
Q ss_pred cEEecCCeee
Q psy11896 664 PVVLGKPKVA 673 (1043)
Q Consensus 664 ~i~~~~p~V~ 673 (1043)
++.+.+..+.
T Consensus 459 e~~~e~~~~~ 468 (528)
T COG4108 459 EAVFEPVNFS 468 (528)
T ss_pred eEEEeeccce
Confidence 9998764443
No 26
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=2.2e-47 Score=415.67 Aligned_cols=270 Identities=62% Similarity=0.964 Sum_probs=259.8
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
||+++||+|+|||||+++|++.++.+.+.+.++++ ++++|+.+.|++||+|+++....+.|+++++++||||||.+|
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGG---GATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCC---ccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH
Confidence 79999999999999999999999999888888887 568999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeecccc
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGL 360 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~ 360 (1043)
..++.++++.+|++++|+|+.+|+..+|..+|+.+...++|+++|+||+|+.++++++.++++++.++..+.+.++|+..
T Consensus 78 ~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 78 TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhh
Q psy11896 361 GSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440 (1043)
Q Consensus 361 ~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~ 440 (1043)
..+|+|++|++.++++.|....|......++|+++.+.++++|++|+|.++|.||+|||+||++.+++.+++..+|++++
T Consensus 158 ~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~ 237 (270)
T cd01886 158 EDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGT 237 (270)
T ss_pred CCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999954457777888999999999999999999999999999999999999999999999999999
Q ss_pred hcCccEEEEEeeccCCCCHHHHHHHHHHhCCCC
Q psy11896 441 LTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473 (1043)
Q Consensus 441 ~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp 473 (1043)
+.+.++|||||||.+|.|++.|||+|+.++|+|
T Consensus 238 ~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 238 IANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=4.1e-43 Score=382.00 Aligned_cols=265 Identities=35% Similarity=0.545 Sum_probs=242.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCC-ccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGK-DNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~-~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
++|||+++||+|+|||||+++|++.++.+.+.|.+++. ..-.+++|+.+.|++||+|+......+.|+++++++|||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 37999999999999999999999999999998888731 01145799999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.+|..++..+++.+|++|+|+|+..|+..++..+|+.+...++|+++|+||+|+.++++.+.++++++.++..+.++++
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999988999999999999999999988999999999999999999
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCC-eeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGD-NLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~-~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
|++.+..|.|++|+++++++.|....|. .....++|+++. |.+++.|++|||+|+++..++.+++...
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 9999999999999999999999432233 445566776643 6788999999999999999999999999
Q ss_pred HHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCC
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp 473 (1043)
++++++.+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
No 28
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=3.6e-41 Score=370.36 Aligned_cols=268 Identities=39% Similarity=0.598 Sum_probs=254.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
||+++||+|+|||||+++|++..+.+.+.+.+..| .+++|+.+.|..+++|+......+.|+++.+++||||||.+|
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g---~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG---TTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC---cccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH
Confidence 68999999999999999999988888888888776 467899999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeecccc
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGL 360 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~ 360 (1043)
..++..+++.+|++++|+|+..|...++..+|+++...++|.++|+||+|+.++++.+.++.+++.++..+.++++|+..
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhh
Q psy11896 361 GSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440 (1043)
Q Consensus 361 ~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~ 440 (1043)
+.++.|++|++.+.++.|.. |......++|.++.+.+.++|..|+|.+++.||+|||+||++.+++.+++..++++++
T Consensus 158 ~~~~~~~vd~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~ 235 (268)
T cd04170 158 GDDFKGVVDLLTEKAYIYSP--GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRAL 235 (268)
T ss_pred CCceeEEEEcccCEEEEccC--CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999964 3445667899999999999999999999999999999999999999999999999999
Q ss_pred hcCccEEEEEeeccCCCCHHHHHHHHHHhCCCC
Q psy11896 441 LTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473 (1043)
Q Consensus 441 ~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp 473 (1043)
..+.++|||||||+++.|++.||+++.+++|+|
T Consensus 236 ~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 236 RAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred HhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998
No 29
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=1.4e-40 Score=356.43 Aligned_cols=237 Identities=43% Similarity=0.663 Sum_probs=220.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
||+++||+|+|||||+++|++.++.+.+.|.++.+ .+++|+.+.|++||+|+......+.|+++++++||||||.+|
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~---~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKG---TTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCC---cccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch
Confidence 69999999999999999999999999998888877 467999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeecccc
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGL 360 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~ 360 (1043)
..++..+++.+|++++|+|+.+|+..++..+|+.+.+.++|+++|+||+|+.++++++.++++++.++..+.|+++|.
T Consensus 78 ~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~-- 155 (237)
T cd04168 78 IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG-- 155 (237)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhh
Q psy11896 361 GSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440 (1043)
Q Consensus 361 ~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~ 440 (1043)
+.+.+. .. .+.|++|+|.++|.||+|||+||++.+++.+++..++++++
T Consensus 156 ------~~~~~~--------------~~-----------~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~ 204 (237)
T cd04168 156 ------LAPNIC--------------ET-----------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARI 204 (237)
T ss_pred ------Eeeeee--------------ee-----------eeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 221110 11 13357899999999999999999999999999999999999
Q ss_pred hcCccEEEEEeeccCCCCHHHHHHHHHHhCCCC
Q psy11896 441 LTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473 (1043)
Q Consensus 441 ~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp 473 (1043)
..+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 205 ~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 205 AKRKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred HhCCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998
No 30
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=5.4e-38 Score=347.43 Aligned_cols=279 Identities=20% Similarity=0.217 Sum_probs=229.2
Q ss_pred cceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc---------hHHHHHHHhhh
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVEVERALRV 73 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~---------~~~~~~~~~~~ 73 (1043)
.+.|| |-+.+||+|.+.+.+..... .+..||+|+|..+...+|.+..|.++||+|... +..++..++..
T Consensus 5 ~VAIV-GRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 5 VVAIV-GRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred EEEEE-CCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 35555 88888877776555554433 788999999999999999999999999999973 45668889999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
||++|||+|+..|++..+..+.++++..++|+++|+||+|-.+.+ +...+ ++.+.+.++++|
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e-----~~~~e-------------fyslG~g~~~~I 145 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE-----ELAYE-------------FYSLGFGEPVPI 145 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh-----hhHHH-------------HHhcCCCCceEe
Confidence 999999999999999999999999998889999999999975321 11111 144667788999
Q ss_pred eecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeec
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR 233 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~ 233 (1043)
||.+|.|+.+|++.+...++ ..+..... ......+|||+|.||+|||||+|+|+...+.+
T Consensus 146 SA~Hg~Gi~dLld~v~~~l~-~~e~~~~~------------~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~I------- 205 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELLP-PDEEEEEE------------EETDPIKIAIIGRPNVGKSSLINAILGEERVI------- 205 (444)
T ss_pred ehhhccCHHHHHHHHHhhcC-Cccccccc------------ccCCceEEEEEeCCCCCchHHHHHhccCceEE-------
Confidence 99999999999999998774 21111111 00345779999999999999999998666554
Q ss_pred CCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC----------ch-HHHHHHhHhcCeEEEEEeCCC
Q psy11896 234 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD----------FT-VEVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 234 ~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d----------f~-~e~~~~l~~~D~~ilVvda~~ 302 (1043)
.....|+|+++....++|++..+.+|||+|... |+ ..+..++..+|.+++|+||.+
T Consensus 206 -------------v~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~ 272 (444)
T COG1160 206 -------------VSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE 272 (444)
T ss_pred -------------ecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC
Confidence 234789999999999999999999999999533 33 346788899999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 303 g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
|+..|...+...+.+.+.++++|+||+|+...
T Consensus 273 ~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 273 GISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred CchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 99999999999999999999999999998753
No 31
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=2.6e-33 Score=330.26 Aligned_cols=276 Identities=19% Similarity=0.165 Sum_probs=218.4
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
+|+.++ |..++||+|...+...... .....+|+|++.....+.+++..+.+|||||+.+ +...+..+++.
T Consensus 2 ~~I~iv-G~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIV-GRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 577788 9999999999777665543 3566899999999999999999999999999987 44456778899
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++|+|+|++.+....+..+..++...++|+++|+||+|+.+.. . ...+.. ...+.+++++
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~-~----~~~~~~-------------~lg~~~~~~i 142 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE-A----DAYEFY-------------SLGLGEPYPI 142 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch-h----hHHHHH-------------hcCCCCCEEE
Confidence 999999999999888888888888988899999999999975421 1 111111 1222346889
Q ss_pred eecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeec
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR 233 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~ 233 (1043)
||++|.|++++++.+....+... . . .......+|+++|++|+|||||+++|+.....+
T Consensus 143 Sa~~g~gv~~l~~~I~~~~~~~~-----~-~---------~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~------- 200 (435)
T PRK00093 143 SAEHGRGIGDLLDAILEELPEEE-----E-E---------DEEDEPIKIAIIGRPNVGKSSLINALLGEERVI------- 200 (435)
T ss_pred EeeCCCCHHHHHHHHHhhCCccc-----c-c---------cccccceEEEEECCCCCCHHHHHHHHhCCCcee-------
Confidence 99999999999999886332100 0 0 001234789999999999999999998543222
Q ss_pred CCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch-----------HHHHHHhHhcCeEEEEEeCCC
Q psy11896 234 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-----------VEVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 234 ~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~-----------~e~~~~l~~~D~~ilVvda~~ 302 (1043)
....+|+|.+.....+.+++..+.+|||||+.+.. ..+.++++.+|++|+|+|+.+
T Consensus 201 -------------~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~ 267 (435)
T PRK00093 201 -------------VSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATE 267 (435)
T ss_pred -------------ecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 22367889888888888899999999999975422 224567899999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 303 g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|...++..++.++.+.++|+++|+||+|+.
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 268 GITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 999999999999999999999999999986
No 32
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=1.6e-33 Score=331.93 Aligned_cols=276 Identities=20% Similarity=0.189 Sum_probs=219.6
Q ss_pred cceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCc--------chHHHHHHHhhhc
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHV--------DFTVEVERALRVL 74 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~--------~~~~~~~~~~~~a 74 (1043)
|+.++ |..++||+|.....+.... ..+..||+|++.....+.+++..+.+|||||+. .+...+..+++.+
T Consensus 1 ~i~iv-G~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIV-GRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEE-CCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 45566 9999999998666554432 356789999999999999999999999999973 4566778889999
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|++++|+|++.+....+..+..++++.++|+++|+||+|+.+.+.. . .++ +...+.+++++|
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~-~-~~~----------------~~lg~~~~~~vS 141 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV-A-AEF----------------YSLGFGEPIPIS 141 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc-H-HHH----------------HhcCCCCeEEEe
Confidence 9999999999999999999999999899999999999998653321 1 111 112344678999
Q ss_pred ecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecC
Q psy11896 155 AHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG 234 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~ 234 (1043)
|++|.|+++|++.+...+++..+. ........+|+++|++|+|||||+++|+.....+
T Consensus 142 a~~g~gv~~ll~~i~~~l~~~~~~--------------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-------- 199 (429)
T TIGR03594 142 AEHGRGIGDLLDAILELLPEEEEE--------------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVI-------- 199 (429)
T ss_pred CCcCCChHHHHHHHHHhcCccccc--------------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeee--------
Confidence 999999999999998776531100 0011234689999999999999999998543211
Q ss_pred CccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchH-----------HHHHHhHhcCeEEEEEeCCCC
Q psy11896 235 KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV-----------EVERALRVLDGAILVLCAVGG 303 (1043)
Q Consensus 235 ~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~-----------e~~~~l~~~D~~ilVvda~~g 303 (1043)
....+|+|.+.....+.+++..+.+|||||+.++.. .+..+++.+|++|+|+|+.+|
T Consensus 200 ------------~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~ 267 (429)
T TIGR03594 200 ------------VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG 267 (429)
T ss_pred ------------cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 123568888888788888899999999999866432 234578999999999999999
Q ss_pred cchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 304 VQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 304 ~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
...++..+++.+.+.++|+++|+||+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 268 ITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 99999999999999999999999999987
No 33
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.5e-33 Score=333.02 Aligned_cols=279 Identities=16% Similarity=0.184 Sum_probs=216.1
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~ 72 (1043)
+.|+.|+ |..++||+|...+.+.... ..+..||+|++.....+.+++..+.+|||||+.. +...+..+++
T Consensus 38 ~~~V~Iv-G~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVV-GRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 3577777 9999999999776665543 4578999999999999999999999999999862 4555777899
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
.+|++|||+|++++.+..+..+..++...++|+++|+||+|+.....+ . .+.+ ...+..+++
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~-~----~~~~-------------~~g~~~~~~ 178 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD-A----AALW-------------SLGLGEPHP 178 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh-h----HHHH-------------hcCCCCeEE
Confidence 999999999999988888888888888889999999999998643211 1 1111 111223478
Q ss_pred eeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeee
Q psy11896 153 ISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEV 232 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v 232 (1043)
+||++|.|+++|++.+...+++..+. . ......++|+++|++|+|||||+++|+.....+
T Consensus 179 iSA~~g~gi~eL~~~i~~~l~~~~~~---------~-----~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~------ 238 (472)
T PRK03003 179 VSALHGRGVGDLLDAVLAALPEVPRV---------G-----SASGGPRRVALVGKPNVGKSSLLNKLAGEERSV------ 238 (472)
T ss_pred EEcCCCCCcHHHHHHHHhhccccccc---------c-----cccccceEEEEECCCCCCHHHHHHHHhCCCccc------
Confidence 99999999999999998766431100 0 001235889999999999999999997432211
Q ss_pred cCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC---------chHH--HHHHhHhcCeEEEEEeCC
Q psy11896 233 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVE--VERALRVLDGAILVLCAV 301 (1043)
Q Consensus 233 ~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d---------f~~e--~~~~l~~~D~~ilVvda~ 301 (1043)
.+...|+|.+.....+.+++..+.||||||..+ |... ...+++.+|++++|+|+.
T Consensus 239 --------------~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~ 304 (472)
T PRK03003 239 --------------VDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDAS 304 (472)
T ss_pred --------------ccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 223567787777777888899999999999632 2222 234678999999999999
Q ss_pred CCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 302 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 302 ~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++...+...++..+...++|+++|+||+|+..
T Consensus 305 ~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 305 EPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99999999888888889999999999999864
No 34
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=5.1e-32 Score=312.46 Aligned_cols=268 Identities=26% Similarity=0.353 Sum_probs=213.5
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+.+||+++||+|||||||+++|+...... +... ....+.+|..++|++||+|++.....+.++++.++||||||
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~---g~~~--~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPG 84 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAER---GLNQ--AKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPG 84 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhh---cccc--ccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCC
Confidence 346899999999999999999998543221 1111 01123689999999999999999888888899999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.+|...+.++++.+|++++|+|+.+|+..||++++.++...++| +++|+||||+.. .++..+.+.+.
T Consensus 85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~--~~~~~~~i~~~--------- 153 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD--DEELLELVEME--------- 153 (394)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc--hHHHHHHHHHH---------
Confidence 999999999999999999999999999999999999999999999 568899999863 11111111110
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
+...
T Consensus 154 ----------------------------------------------------------------------------i~~~ 157 (394)
T PRK12736 154 ----------------------------------------------------------------------------VREL 157 (394)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1111
Q ss_pred HHHhhhcCccEEEEEeeccCCC--------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNK--------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~--------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
++........+|++++||++|. ++..|++++.+++|.|... .++||+++|+
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~---------------------~~~p~r~~I~ 216 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERD---------------------TDKPFLMPVE 216 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCC---------------------CCCCeEEEEE
Confidence 1111111234699999999983 6899999999999977421 5789999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecCC--CcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcE
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDT 579 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~--~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdt 579 (1043)
+++.+++ |.+++|||.+|+|+.||.|++.+. +...+|.+|.. ...++++|.|||.+++ .|+ ++..|++
T Consensus 217 ~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~v 292 (394)
T PRK12736 217 DVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQV 292 (394)
T ss_pred EEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceE
Confidence 9999988 999999999999999999998765 45678888874 3568899999999965 787 5789999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 293 l~ 294 (394)
T PRK12736 293 LA 294 (394)
T ss_pred Ee
Confidence 98
No 35
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=5.2e-32 Score=313.95 Aligned_cols=269 Identities=27% Similarity=0.370 Sum_probs=212.9
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
....+||+++||+|+|||||+++|++..+.+... . . .....+|+.+.|++||+|++.....+.+++.+++|+|||
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~--~--~-~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtP 83 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGA--K--A-KKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCP 83 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccc--c--c-cccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECC
Confidence 3456899999999999999999999876655321 0 0 012368999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
||.+|...+.+++..+|++++|+|+.+|+..||+.++..+...++| +++++||||+... ++..+.+.+.
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~--~~~~~~~~~~-------- 153 (409)
T CHL00071 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD--EELLELVELE-------- 153 (409)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH--HHHHHHHHHH--------
Confidence 9999999999999999999999999999999999999999999999 6688999998642 2222221111
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
+..
T Consensus 154 -----------------------------------------------------------------------------l~~ 156 (409)
T CHL00071 154 -----------------------------------------------------------------------------VRE 156 (409)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 111
Q ss_pred HHHHhhhcCccEEEEEeeccCCC------------------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCC
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKNK------------------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSR 496 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~~------------------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~ 496 (1043)
.|+........+|++++||++|. |+..||++|.+++|.|...
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~-------------------- 216 (409)
T CHL00071 157 LLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERD-------------------- 216 (409)
T ss_pred HHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCC--------------------
Confidence 11111111223577777777764 4689999999999887421
Q ss_pred CCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecC--CCcEEEeceEEEeccCCeeecCeecCCCEEEE--cc
Q psy11896 497 DGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVR--TDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FG 571 (1043)
Q Consensus 497 ~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~--~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~g 571 (1043)
.+.||+++|++++.+++ |.+++|||++|+++.||.|.+.+ .+...+|.+|... .+++++|.|||++++ .|
T Consensus 217 -~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~ 291 (409)
T CHL00071 217 -TDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF----QKTLDEGLAGDNVGILLRG 291 (409)
T ss_pred -CCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc----CcCCCEECCCceeEEEEcC
Confidence 57899999999999988 99999999999999999998654 3456788888742 357899999999965 47
Q ss_pred C---ccccCcEEe
Q psy11896 572 V---DCASGDTFV 581 (1043)
Q Consensus 572 l---~~~~Gdtl~ 581 (1043)
+ ++..|++|+
T Consensus 292 i~~~~i~~G~vl~ 304 (409)
T CHL00071 292 IQKEDIERGMVLA 304 (409)
T ss_pred CCHHHcCCeEEEe
Confidence 6 578999998
No 36
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=3.4e-32 Score=335.98 Aligned_cols=280 Identities=16% Similarity=0.177 Sum_probs=215.3
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
.++.|+ |.+.+||+|...+.+.... ..+..||+|++......++++.++.+|||||+.. +...+..+++.
T Consensus 276 ~~V~Iv-G~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 276 GVVAIV-GRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 456666 9999999998766654332 3567899999999999999999999999999863 55667788999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++|||+|++.++...+..+...++..++|+++|+||+|+..... ...+.+ ...+..++++
T Consensus 355 aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~-----~~~~~~-------------~lg~~~~~~i 416 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY-----DAAEFW-------------KLGLGEPYPI 416 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh-----hHHHHH-------------HcCCCCeEEE
Confidence 9999999999998888888888888889999999999999864221 111111 1122345789
Q ss_pred eecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeec
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR 233 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~ 233 (1043)
||++|.|+++|++.+...++... .. .........++|+++|++|+|||||+++|+.....+
T Consensus 417 SA~~g~GI~eLl~~i~~~l~~~~------~~------~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~------- 477 (712)
T PRK09518 417 SAMHGRGVGDLLDEALDSLKVAE------KT------SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAV------- 477 (712)
T ss_pred ECCCCCCchHHHHHHHHhccccc------cc------ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccc-------
Confidence 99999999999999987664310 00 000111235799999999999999999998443211
Q ss_pred CCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC---------chHH--HHHHhHhcCeEEEEEeCCC
Q psy11896 234 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVE--VERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 234 ~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d---------f~~e--~~~~l~~~D~~ilVvda~~ 302 (1043)
.....|+|.+.....+.+++..+.||||||+.+ |... ...+++.+|++++|+|+.+
T Consensus 478 -------------v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~ 544 (712)
T PRK09518 478 -------------VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQ 544 (712)
T ss_pred -------------cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 123567787777777888999999999999642 2221 2455789999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 303 g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+.+.+...++..+...++|+++|+||+|+..
T Consensus 545 ~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 545 PISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 9999999999988888999999999999864
No 37
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=7.3e-32 Score=313.93 Aligned_cols=270 Identities=23% Similarity=0.251 Sum_probs=217.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeee---------eecC-CccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMH---------EVRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~---------~v~~-~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
....||+++||+|+|||||+++|++.++.+.+.+ .+.. ...+++++|+.++|++||+|++.+...+.|++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3457999999999999999999999988877533 1122 23456789999999999999999999999999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-------chHHHHHHHHHHhcCCCe-EEEEeccCCCCCC---
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVPC-IAFINKLDRLGAD--- 335 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-------~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~--- 335 (1043)
+.++|||||||.+|..++..+++.+|++++|||+.+|+ ..||+++|.++...++|. |+|+||||+...+
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999997 489999999999999985 5899999965432
Q ss_pred --HHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC
Q psy11896 336 --PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 413 (1043)
Q Consensus 336 --~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~ 413 (1043)
++++.+++.+.++.
T Consensus 165 ~~~~~i~~~i~~~l~~---------------------------------------------------------------- 180 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKK---------------------------------------------------------------- 180 (446)
T ss_pred HHHHHHHHHHHHHHHh----------------------------------------------------------------
Confidence 22222322222210
Q ss_pred ChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------HHHHHHHHhCCCCCCCCcccc
Q psy11896 414 DEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLDYLPNPGEVTNYAI 481 (1043)
Q Consensus 414 dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------~Lld~i~~~lPsp~~~~~~~~ 481 (1043)
.-....-+|++.+||++|.|+. .|+++|... +.|..
T Consensus 181 -------------------------~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~------ 228 (446)
T PTZ00141 181 -------------------------VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKR------ 228 (446)
T ss_pred -------------------------cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCc------
Confidence 0001112688888999999985 488887654 33421
Q ss_pred ccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCe
Q psy11896 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 560 (1043)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~ 560 (1043)
..+.|+.+.|..++..++ |++..|||.+|+|+.||.|.+.+.+...+|.+|. ....++++
T Consensus 229 ---------------~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~----~~~~~~~~ 289 (446)
T PTZ00141 229 ---------------PVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVE----MHHEQLAE 289 (446)
T ss_pred ---------------CCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEE----ecCcccCE
Confidence 156899999999999888 9999999999999999999999988888999987 33567999
Q ss_pred ecCCCEEEE--ccC---ccccCcEEe
Q psy11896 561 VLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 561 a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
|.|||.+++ .++ ++..|++|+
T Consensus 290 a~aG~~v~i~L~~i~~~~v~rG~vl~ 315 (446)
T PTZ00141 290 AVPGDNVGFNVKNVSVKDIKRGYVAS 315 (446)
T ss_pred ECCCCEEEEEECCCCHHHcCCceEEe
Confidence 999999985 455 578899998
No 38
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.6e-31 Score=322.65 Aligned_cols=303 Identities=25% Similarity=0.341 Sum_probs=239.8
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..+|+++||+|||||||+++|.... +. ....+|+|.+.....+.|+++.++||||||
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--------v~-------------~~e~~GIT~~iga~~v~~~~~~ItfiDTPG 346 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--------VA-------------AGEAGGITQHIGAYQVETNGGKITFLDTPG 346 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--------cc-------------ccccCceeeeccEEEEEECCEEEEEEECCC
Confidence 345789999999999999999995211 11 112578999888888999999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.+|...+.++++.+|++|+|+|+.+|+..||..+|..+...++|+++|+||||+.+++++.+..++.+ .+.
T Consensus 347 he~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~-~~~------- 418 (787)
T PRK05306 347 HEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSE-YGL------- 418 (787)
T ss_pred CccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHH-hcc-------
Confidence 999999999999999999999999999999999999999999999999999999987665544443322 000
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
+.+.
T Consensus 419 ------------------------------------------------------------~~e~---------------- 422 (787)
T PRK05306 419 ------------------------------------------------------------VPEE---------------- 422 (787)
T ss_pred ------------------------------------------------------------cHHH----------------
Confidence 0000
Q ss_pred HHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-c
Q psy11896 437 RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-G 515 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G 515 (1043)
.+..+|++++||++|.|++.|+++|...... .+ +.++ ++.|+.++||+++.+++ |
T Consensus 423 -----~g~~vp~vpvSAktG~GI~eLle~I~~~~e~-~~----------------l~~~--~~~~~~g~V~es~~dkg~G 478 (787)
T PRK05306 423 -----WGGDTIFVPVSAKTGEGIDELLEAILLQAEV-LE----------------LKAN--PDRPARGTVIEAKLDKGRG 478 (787)
T ss_pred -----hCCCceEEEEeCCCCCCchHHHHhhhhhhhh-hh----------------cccC--CCCCcEEEEEEEEEcCCCe
Confidence 1223689999999999999999998753210 00 1122 67899999999999998 9
Q ss_pred cEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-cc-ccCcEEecCCCC-------
Q psy11896 516 QLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDTFVTDKNN------- 586 (1043)
Q Consensus 516 ~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdtl~~~~~~------- 586 (1043)
.++++||++|+|+.||.|++.. +.++++.+.+.+..++++|.||++|.|.|| ++ .+||||+.-.+.
T Consensus 479 ~v~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~ 553 (787)
T PRK05306 479 PVATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIA 553 (787)
T ss_pred EEEEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHH
Confidence 9999999999999999999853 467788888878889999999999999999 66 899999831110
Q ss_pred ----------------cccccCCC--CCC---ceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEE
Q psy11896 587 ----------------SISLESIY--VAD---PVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFY 633 (1043)
Q Consensus 587 ----------------~~~~~~~~--~~~---pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~ 633 (1043)
...++.+. ... +.+.+.|.+......+.|..+|.+|..+++.+.+-.
T Consensus 554 ~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~ 621 (787)
T PRK05306 554 EYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIH 621 (787)
T ss_pred HHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEe
Confidence 11122221 111 268999999999999999999999999999887743
No 39
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.1e-31 Score=312.20 Aligned_cols=270 Identities=22% Similarity=0.249 Sum_probs=214.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeee--ee-----c---CCccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMH--EV-----R---GKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~--~v-----~---~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
....||+++||+|+|||||+++|++.++.+.+.+ .+ + +...+++++|..++|++||+|++.....+.|++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3468999999999999999999999998776532 11 1 112346789999999999999999999999999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-------chHHHHHHHHHHhcCCC-eEEEEeccCCCCCC---
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD--- 335 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~--- 335 (1043)
+.++|+|||||.+|..++..+++.+|++|+|||+.+|. ..||++++.++...++| +++|+||||+...+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 99999999999999999999999999999999999883 27999999999999997 57789999986222
Q ss_pred --HHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC
Q psy11896 336 --PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 413 (1043)
Q Consensus 336 --~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~ 413 (1043)
++++.++++..++
T Consensus 165 ~~~~~i~~ei~~~l~----------------------------------------------------------------- 179 (447)
T PLN00043 165 ARYDEIVKEVSSYLK----------------------------------------------------------------- 179 (447)
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 2222222222111
Q ss_pred ChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------HHHHHHHHhCCCCCCCCcccc
Q psy11896 414 DEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLDYLPNPGEVTNYAI 481 (1043)
Q Consensus 414 dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------~Lld~i~~~lPsp~~~~~~~~ 481 (1043)
...+ ...-+|++.+||++|.|+. .|+++|.+ +|.|...
T Consensus 180 ----------~~g~--------------~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~~----- 229 (447)
T PLN00043 180 ----------KVGY--------------NPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRP----- 229 (447)
T ss_pred ----------HcCC--------------CcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCccc-----
Confidence 0000 0012467777999998874 47888865 4444321
Q ss_pred ccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCe
Q psy11896 482 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 560 (1043)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~ 560 (1043)
.+.||++.|..++..++ |++..|||.+|++++||.|.+.+.+...+|.+|. ....++++
T Consensus 230 ----------------~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~----~~~~~v~~ 289 (447)
T PLN00043 230 ----------------SDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVE----MHHESLQE 289 (447)
T ss_pred ----------------cCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEE----ECCeEeCE
Confidence 57899999999999887 9999999999999999999999988888999987 34678999
Q ss_pred ecCCCEEEE--ccC---ccccCcEEe
Q psy11896 561 VLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 561 a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
|.|||.+++ .++ ++..|+.|+
T Consensus 290 a~aGd~v~i~l~~~~~~~i~rG~vl~ 315 (447)
T PLN00043 290 ALPGDNVGFNVKNVAVKDLKRGYVAS 315 (447)
T ss_pred ecCCCeEEEEECCCCHhhCCCccEEc
Confidence 999999985 455 578899998
No 40
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=4.5e-31 Score=305.17 Aligned_cols=268 Identities=27% Similarity=0.368 Sum_probs=211.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+.+||+++||+|||||||+++|++... ..|.... ...+.+|..++|++||+|++.....+.+++++++||||||
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~--~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAA--RAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPG 84 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHH---Hhhcccc--cccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCc
Confidence 4468999999999999999999985422 1111111 1134689999999999999999988888889999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.+|...+.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+... ++..+.+.+.+
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~~~~~i-------- 154 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEMEV-------- 154 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH--HHHHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999976 58999998631 11111111100
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
...
T Consensus 155 -----------------------------------------------------------------------------~~~ 157 (394)
T TIGR00485 155 -----------------------------------------------------------------------------REL 157 (394)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHhhhcCccEEEEEeeccCCC--------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNK--------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~--------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
++........+|++++||++|. ++..|++++.+++|.|... .++||+++|+
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~---------------------~~~p~r~~V~ 216 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERE---------------------TDKPFLMPIE 216 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCC---------------------CCCCeEEEEE
Confidence 1100011223689999999875 5678999999998877422 5689999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecC--CCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcE
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVR--TDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDT 579 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~--~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdt 579 (1043)
+++.+++ |.+++|||.+|++++||.|++.+ .+...+|.+|.. ...++++|.|||.+++ .|+ ++..|++
T Consensus 217 ~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~v 292 (394)
T TIGR00485 217 DVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEM----FRKELDEGRAGDNVGLLLRGIKREEIERGMV 292 (394)
T ss_pred EEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEE----CCeEEEEECCCCEEEEEeCCccHHHCCccEE
Confidence 9999988 99999999999999999999875 356778999884 3467899999999975 676 5789999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 293 l~ 294 (394)
T TIGR00485 293 LA 294 (394)
T ss_pred Ee
Confidence 98
No 41
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=4.5e-31 Score=287.00 Aligned_cols=277 Identities=25% Similarity=0.311 Sum_probs=214.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
...|++++||+|||||||+.+|++..|.+.... .-.++..+++++|.+++|++||+|++.+...|+.+.+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 457899999999999999999999999987621 1223347889999999999999999999999999999
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHH
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRV 339 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~ 339 (1043)
.++++|||||.||..++..+.+.+|++|+||||..| +.+||++++-++...++. .|+++||||....+. +.
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde-~r 164 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE-ER 164 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH-HH
Confidence 999999999999999999999999999999999988 999999999999999996 677899999987553 22
Q ss_pred HHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHH
Q psy11896 340 INQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGE 419 (1043)
Q Consensus 340 ~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~ 419 (1043)
++++...+.. |++.+
T Consensus 165 f~ei~~~v~~--------------------------------------------------------l~k~~--------- 179 (428)
T COG5256 165 FEEIVSEVSK--------------------------------------------------------LLKMV--------- 179 (428)
T ss_pred HHHHHHHHHH--------------------------------------------------------HHHHc---------
Confidence 2222221110 00000
Q ss_pred HHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------HHHHHHHHhCCCCCCCCccccccCccc
Q psy11896 420 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLDYLPNPGEVTNYAIENGQED 487 (1043)
Q Consensus 420 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------~Lld~i~~~lPsp~~~~~~~~~~~~~~ 487 (1043)
.. ...-+|.+.+||++|.++. .||++|. .+..|..
T Consensus 180 ------G~--------------~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~------------ 226 (428)
T COG5256 180 ------GY--------------NPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPER------------ 226 (428)
T ss_pred ------CC--------------CccCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCC------------
Confidence 00 0001223333666665552 4555555 3333321
Q ss_pred ceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCE
Q psy11896 488 KKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI 566 (1043)
Q Consensus 488 ~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdI 566 (1043)
..+.||++-|.+++.... |.+..+||.+|.|++||.|++.+.+..-.|+++. .+.++++.+.+||.
T Consensus 227 ---------~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie----~~~~~~~~a~~GD~ 293 (428)
T COG5256 227 ---------PLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIE----MHHEEISQAEPGDN 293 (428)
T ss_pred ---------CCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeee----ecccccccCCCCCe
Confidence 158999999999998555 9999999999999999999999888788888887 55889999999999
Q ss_pred EE--EccC---ccccCcEEecCCCCc
Q psy11896 567 FA--LFGV---DCASGDTFVTDKNNS 587 (1043)
Q Consensus 567 v~--i~gl---~~~~Gdtl~~~~~~~ 587 (1043)
++ +.|+ |++.||.+. +..++
T Consensus 294 i~~~vrgv~~~dI~~Gdv~~-~~~n~ 318 (428)
T COG5256 294 VGFNVRGVEKNDIRRGDVIG-HSDNP 318 (428)
T ss_pred EEEEecCCchhccCCccEec-cCCCC
Confidence 97 5676 789999998 44433
No 42
>PRK12735 elongation factor Tu; Reviewed
Probab=99.97 E-value=2e-30 Score=299.40 Aligned_cols=268 Identities=26% Similarity=0.354 Sum_probs=211.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..||+++||+|||||||+++|++..... +.. .....+.+|..++|+++|+|++.....+.+++.+++|+||||
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~---g~~--~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKK---GGG--EAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPG 84 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhc---CCc--ccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCC
Confidence 446899999999999999999998643211 110 101124689999999999999999988888899999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.+|...+.+++..+|++++|+|+.+|+..||++++..+...++|.+ +|+||||+.. .++..+.+.+.+
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~--~~~~~~~~~~ei-------- 154 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD--DEELLELVEMEV-------- 154 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc--hHHHHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999976 5799999863 111121111100
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
...
T Consensus 155 -----------------------------------------------------------------------------~~~ 157 (396)
T PRK12735 155 -----------------------------------------------------------------------------REL 157 (396)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHhhhcCccEEEEEeeccCC----------CCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKN----------KGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIAL 505 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 505 (1043)
++..-..+..+|++.+||++| .|+..|+++|.+.+|.|... .++||+++
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~---------------------~~~p~r~~ 216 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERA---------------------IDKPFLMP 216 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCcc---------------------CCCCeEEE
Confidence 000000112368888899888 47899999999999977421 57899999
Q ss_pred EEeeeecCC-ccEEEEEEecCeecCCCEEEecCC--CcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccC
Q psy11896 506 AFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASG 577 (1043)
Q Consensus 506 V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~--~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~G 577 (1043)
|..++..++ |.++.|||.+|++++||.|++.+. +...+|.+|.. ...++++|.|||.+++ .|+ ++..|
T Consensus 217 I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG 292 (396)
T PRK12735 217 IEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERG 292 (396)
T ss_pred EEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcc
Confidence 999999888 999999999999999999998764 35678888873 3578999999999986 677 57899
Q ss_pred cEEe
Q psy11896 578 DTFV 581 (1043)
Q Consensus 578 dtl~ 581 (1043)
++|+
T Consensus 293 ~vl~ 296 (396)
T PRK12735 293 QVLA 296 (396)
T ss_pred eEEE
Confidence 9999
No 43
>PLN03126 Elongation factor Tu; Provisional
Probab=99.97 E-value=2.8e-30 Score=301.07 Aligned_cols=265 Identities=27% Similarity=0.370 Sum_probs=210.4
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
....+||+++||+|+|||||+++|++..+.+... ...+ ...+|..+.|+.+|+|++.....+.++++.++|||||
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~--~~~~---~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtP 152 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGS--APKK---YDEIDAAPEERARGITINTATVEYETENRHYAHVDCP 152 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccc--cccc---cccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECC
Confidence 3457899999999999999999999877765321 1111 2468999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHH----HHHHHhCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVIN----QMRQKVGHN 350 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~----~i~~~l~~~ 350 (1043)
||.+|..++..+++.+|++++|||+.+|+..||++++..+...++| +++++||||+.. .++..+ ++.+.+..
T Consensus 153 Gh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~--~~~~~~~i~~~i~~~l~~- 229 (478)
T PLN03126 153 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD--DEELLELVELEVRELLSS- 229 (478)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC--HHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999 667899999864 222222 22222211
Q ss_pred ceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHH
Q psy11896 351 AAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISED 430 (1043)
Q Consensus 351 ~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~ 430 (1043)
T Consensus 230 -------------------------------------------------------------------------------- 229 (478)
T PLN03126 230 -------------------------------------------------------------------------------- 229 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCccEEEEEeeccCCC------------------CHHHHHHHHHHhCCCCCCCCccccccCcccceeee
Q psy11896 431 DIKKAIRRSTLTRKFTPVLVGTALKNK------------------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVL 492 (1043)
Q Consensus 431 ~l~~~l~~~~~~~~~~Pv~~gSa~~~~------------------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~ 492 (1043)
.-.....+|++.+||++|. ++..|+++|.++.|.|...
T Consensus 230 --------~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~---------------- 285 (478)
T PLN03126 230 --------YEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQ---------------- 285 (478)
T ss_pred --------cCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCc----------------
Confidence 0001122455555555542 3568999999987766421
Q ss_pred CCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC--cEEEeceEEEeccCCeeecCeecCCCEEEE
Q psy11896 493 NPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL 569 (1043)
Q Consensus 493 ~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~--~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i 569 (1043)
.+.||.++|..++..++ |.+..|+|.+|++++||.|++.+.+ ...+|.+|.. ...++++|.|||.+++
T Consensus 286 -----~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~----~~~~v~~A~aG~~v~l 356 (478)
T PLN03126 286 -----TDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEM----FQKILDEALAGDNVGL 356 (478)
T ss_pred -----cccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEE----CCeECCEEeCCceeee
Confidence 46899999999999888 9999999999999999999998654 4578888873 3568999999999986
Q ss_pred --ccC---ccccCcEEe
Q psy11896 570 --FGV---DCASGDTFV 581 (1043)
Q Consensus 570 --~gl---~~~~Gdtl~ 581 (1043)
.|+ ++..|++|+
T Consensus 357 ~L~~i~~~di~rG~VL~ 373 (478)
T PLN03126 357 LLRGIQKADIQRGMVLA 373 (478)
T ss_pred eccCCcHHHcCCccEEe
Confidence 676 578999998
No 44
>PRK00049 elongation factor Tu; Reviewed
Probab=99.97 E-value=3.2e-30 Score=297.38 Aligned_cols=268 Identities=27% Similarity=0.359 Sum_probs=210.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
....||+++||+|||||||+++|++..... +. ........+|+.++|++||+|++.....+.+++.+++|+||||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~---g~--~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKK---GG--AEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG 84 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhc---cC--CcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence 456899999999999999999998643211 11 1111123689999999999999999888888899999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.+|...+..++..+|++++|+|+.+|+..||+.++.++...++|.+ +++||+|+.. .++.++.+.+.+
T Consensus 85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~--~~~~~~~~~~~i-------- 154 (396)
T PRK00049 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD--DEELLELVEMEV-------- 154 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc--hHHHHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999986 5899999863 112222111110
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
...
T Consensus 155 -----------------------------------------------------------------------------~~~ 157 (396)
T PRK00049 155 -----------------------------------------------------------------------------REL 157 (396)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHhhhcCccEEEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIAL 505 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~----------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 505 (1043)
+...-.....+|++.+||++|. |+..|+++|.+++|.|... .+.||.+.
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~---------------------~~~p~r~~ 216 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERA---------------------IDKPFLMP 216 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCC---------------------CCCCeEEE
Confidence 1100001123577788888764 6789999999999877421 57899999
Q ss_pred EEeeeecCC-ccEEEEEEecCeecCCCEEEecCC--CcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccC
Q psy11896 506 AFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASG 577 (1043)
Q Consensus 506 V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~--~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~G 577 (1043)
|..++..++ |.++.|||.+|++++||+|.+.+. +...+|.+|.. ..+++++|.|||.+++ .|+ ++..|
T Consensus 217 I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~----~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G 292 (396)
T PRK00049 217 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEM----FRKLLDEGQAGDNVGALLRGIKREDVERG 292 (396)
T ss_pred EEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEE----CCcEeCEEcCCCEEEEEeCCCCHHHCCcc
Confidence 999999888 999999999999999999988754 56678888873 3468999999999986 676 57889
Q ss_pred cEEe
Q psy11896 578 DTFV 581 (1043)
Q Consensus 578 dtl~ 581 (1043)
++|+
T Consensus 293 ~vl~ 296 (396)
T PRK00049 293 QVLA 296 (396)
T ss_pred eEEe
Confidence 9999
No 45
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=2.4e-30 Score=302.96 Aligned_cols=270 Identities=26% Similarity=0.312 Sum_probs=216.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
....||+++||+|+|||||+++|++..+.+.... .......+++++|+.++|+++|+|++.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 3468999999999999999999999988876431 001112356789999999999999999999999999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC--CcchHHHHHHHHHHhcCC-CeEEEEeccCCCCCCHH---HHH
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG--GVQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPY---RVI 340 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~--g~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~~~~~---~~~ 340 (1043)
+.++|||||||.+|...+..+++.+|++++|+|+.+ ++..++..++..+...++ |+++|+||+|+...+.+ +..
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999888887 47889999998753221 111
Q ss_pred HHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHH
Q psy11896 341 NQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEM 420 (1043)
Q Consensus 341 ~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~ 420 (1043)
+++.+.+.
T Consensus 164 ~~i~~~l~------------------------------------------------------------------------ 171 (425)
T PRK12317 164 EEVSKLLK------------------------------------------------------------------------ 171 (425)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111110
Q ss_pred HhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------HHHHHHHhCCCCCCCCccccccCcccc
Q psy11896 421 FLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDYLPNPGEVTNYAIENGQEDK 488 (1043)
Q Consensus 421 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~ 488 (1043)
..-......|++.+||++|.|++. |+++|.. +|.|...
T Consensus 172 -----------------~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~~------------ 221 (425)
T PRK12317 172 -----------------MVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEKP------------ 221 (425)
T ss_pred -----------------hhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCccc------------
Confidence 000011135788899999999975 8888654 5655321
Q ss_pred eeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEE
Q psy11896 489 KVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIF 567 (1043)
Q Consensus 489 ~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv 567 (1043)
.+.||.+.|..++..++ |++..|||.+|+++.||.|.+.+.+...+|.+|.. ...++++|.|||.+
T Consensus 222 ---------~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~----~~~~~~~a~aG~~v 288 (425)
T PRK12317 222 ---------TDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEM----HHEELPQAEPGDNI 288 (425)
T ss_pred ---------cCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEE----CCcccCEECCCCeE
Confidence 57899999999999888 99999999999999999999998888889999883 45689999999999
Q ss_pred EE--ccC---ccccCcEEe
Q psy11896 568 AL--FGV---DCASGDTFV 581 (1043)
Q Consensus 568 ~i--~gl---~~~~Gdtl~ 581 (1043)
++ .|+ ++..|++|+
T Consensus 289 ~i~l~~~~~~~i~rG~vl~ 307 (425)
T PRK12317 289 GFNVRGVGKKDIKRGDVCG 307 (425)
T ss_pred EEEECCCCHHHccCccEec
Confidence 75 566 568899998
No 46
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.97 E-value=3e-29 Score=298.93 Aligned_cols=301 Identities=25% Similarity=0.335 Sum_probs=230.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe-eEEEEcCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGH 277 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDtPG~ 277 (1043)
.++|+++||+|||||||+++|.... + .....+|+|.+.....+.|++. .++|||||||
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~--v-------------------~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh 145 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTK--V-------------------AQGEAGGITQHIGAYHVENEDGKMITFLDTPGH 145 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCC--c-------------------ccccCCceeecceEEEEEECCCcEEEEEECCCC
Confidence 3679999999999999999996321 1 0122468888888888888655 8999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
.+|...+.++.+.+|++++|+|+.+|+..||.++++.+...++|+++++||+|+.++++++..+.+.+ ++.
T Consensus 146 e~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~-------- 216 (587)
T TIGR00487 146 EAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGL-------- 216 (587)
T ss_pred cchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhh--------
Confidence 99999999999999999999999999999999999999999999999999999986665443332221 000
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
..+
T Consensus 217 -----------------------------------------------------------~~~------------------ 219 (587)
T TIGR00487 217 -----------------------------------------------------------VPE------------------ 219 (587)
T ss_pred -----------------------------------------------------------hHH------------------
Confidence 000
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
..+...|++.+||++|.|+++|+++|...- ...+ +.. +++.|+.++|+++..+++ |.
T Consensus 220 ---~~~~~~~~v~iSAktGeGI~eLl~~I~~~~-~~~~----------------l~~--~~~~~~~~~V~ev~~~~g~G~ 277 (587)
T TIGR00487 220 ---DWGGDTIFVPVSALTGDGIDELLDMILLQS-EVEE----------------LKA--NPNGQASGVVIEAQLDKGRGP 277 (587)
T ss_pred ---hcCCCceEEEEECCCCCChHHHHHhhhhhh-hhcc----------------ccC--CCCCCceeEEEEEEEeCCCcE
Confidence 011224788899999999999999986421 0000 011 267899999999999988 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-cc-ccCcEEecCCCC--------
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDTFVTDKNN-------- 586 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdtl~~~~~~-------- 586 (1043)
+++++|++|+|++||.|.+.+. ..+|..++.. ....+++|.||+++.+.|+ ++ .+||+|..-.+.
T Consensus 278 v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~---~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~ 352 (587)
T TIGR00487 278 VATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDE---NGKSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAE 352 (587)
T ss_pred EEEEEEEeCEEeCCCEEEECCC--ccEEEEEECC---CCCCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHH
Confidence 9999999999999999988753 3456666543 3456899999999999999 55 789999721110
Q ss_pred ---------------cccccCCCC-----CCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEE
Q psy11896 587 ---------------SISLESIYV-----ADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFY 633 (1043)
Q Consensus 587 ---------------~~~~~~~~~-----~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~ 633 (1043)
...+..+.. ..|.+.+.|++......+.|.++|.++..+++++.+..
T Consensus 353 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 353 KRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred HHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE
Confidence 111222211 23889999999999999999999999999999988754
No 47
>PLN03127 Elongation factor Tu; Provisional
Probab=99.97 E-value=1.9e-29 Score=293.02 Aligned_cols=270 Identities=26% Similarity=0.351 Sum_probs=208.2
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
......||+++||+|||||||+++|+.... +.|..... ....+|..++|++||+|++.....+++++++++|+||
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~---~~g~~~~~--~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDt 131 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAV--AFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDC 131 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHH---Hhhcccce--eeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEEC
Confidence 345578999999999999999999974321 11111111 1125899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
|||.+|...+..++..+|++++|+|+.+|+..||++++.++...++|. ++++||||+.. .++..+.+.+.+.
T Consensus 132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~--~~~~~~~i~~~i~----- 204 (447)
T PLN03127 132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD--DEELLELVEMELR----- 204 (447)
T ss_pred CCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC--HHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999995 68899999863 1122221111000
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
T Consensus 205 -------------------------------------------------------------------------------- 204 (447)
T PLN03127 205 -------------------------------------------------------------------------------- 204 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCccEEEEEeecc---CCCC-------HHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcE
Q psy11896 434 KAIRRSTLTRKFTPVLVGTAL---KNKG-------VQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFI 503 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~---~~~G-------v~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 503 (1043)
..+...-.....+|++.+||+ +|.| +..|++++.+++|.|... .++||+
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~---------------------~~~pfr 263 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRV---------------------LDKPFL 263 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcc---------------------cccceE
Confidence 000000001123577777765 4444 789999999999977421 568999
Q ss_pred EEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCC----CcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---c
Q psy11896 504 ALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT----DKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---D 573 (1043)
Q Consensus 504 ~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~----~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~ 573 (1043)
+.|..++..++ |.+..|||.+|++++||.|++.+. +...+|.+|... ..+++++.|||.+++ .|+ +
T Consensus 264 ~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~ 339 (447)
T PLN03127 264 MPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKRED 339 (447)
T ss_pred eeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHH
Confidence 99999999888 999999999999999999988753 346788888733 457899999999985 676 5
Q ss_pred cccCcEEe
Q psy11896 574 CASGDTFV 581 (1043)
Q Consensus 574 ~~~Gdtl~ 581 (1043)
+..|++|+
T Consensus 340 i~rG~Vl~ 347 (447)
T PLN03127 340 VQRGQVIC 347 (447)
T ss_pred CCCccEEe
Confidence 78999999
No 48
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.97 E-value=8.6e-30 Score=294.81 Aligned_cols=267 Identities=22% Similarity=0.281 Sum_probs=205.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCcee--eeeec-----C-----CccccccccchhhhhhcCceEeeeeEEEEecCee
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR-----G-----KDNVGAVMDSMELERQRGITIQSAATYTLWKDHN 268 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~--~~~v~-----~-----~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 268 (1043)
||+++||+|||||||+++|++.++.+.+ .+.+. . ...+++++|..++|++||+|++.....+.|++++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 6999999999999999999999998875 22221 1 2345779999999999999999999999999999
Q ss_pred EEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHh
Q psy11896 269 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKV 347 (1043)
Q Consensus 269 i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l 347 (1043)
++|||||||.+|..++..++..+|++++|+|+.+|+..||++++..+...++| +++|+||||+...+ .+.++.+.+.+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~~ 160 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKDY 160 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988886 67799999987533 22222222211
Q ss_pred CCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCC
Q psy11896 348 GHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSI 427 (1043)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~ 427 (1043)
. .++
T Consensus 161 ~-----------------------------------------------------------------------~~~----- 164 (406)
T TIGR02034 161 L-----------------------------------------------------------------------AFA----- 164 (406)
T ss_pred H-----------------------------------------------------------------------HHH-----
Confidence 1 000
Q ss_pred CHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------HHHHHHHhCCCCCCCCccccccCcccceeeeCCC
Q psy11896 428 SEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPS 495 (1043)
Q Consensus 428 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~ 495 (1043)
+. ... ..+|++.+||++|.|++. |+++|.. +|.|..
T Consensus 165 ---------~~-~~~-~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~-------------------- 212 (406)
T TIGR02034 165 ---------EQ-LGF-RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERD-------------------- 212 (406)
T ss_pred ---------HH-cCC-CCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCC--------------------
Confidence 00 000 124677789999999864 6666654 444421
Q ss_pred CCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC--
Q psy11896 496 RDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-- 572 (1043)
Q Consensus 496 ~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-- 572 (1043)
..+.|+.+.|..++...+ +.-..|+|.+|+|++||.|.+.+.+...+|.+|... ..++++|.|||.+++..-
T Consensus 213 -~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~~G~~v~l~l~~~ 287 (406)
T TIGR02034 213 -AQDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTF----DGDLEQARAGQAVTLTLDDE 287 (406)
T ss_pred -cCCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEEC----CcccCEeCCCCEEEEEECCc
Confidence 146788877666554322 222569999999999999999888888899999733 346899999999987542
Q ss_pred -ccccCcEEe
Q psy11896 573 -DCASGDTFV 581 (1043)
Q Consensus 573 -~~~~Gdtl~ 581 (1043)
++..|++|+
T Consensus 288 ~~i~rG~vl~ 297 (406)
T TIGR02034 288 IDISRGDLLA 297 (406)
T ss_pred cccCCccEEE
Confidence 567899998
No 49
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.97 E-value=2.1e-29 Score=294.89 Aligned_cols=274 Identities=25% Similarity=0.316 Sum_probs=214.3
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEec
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK 265 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 265 (1043)
....+||+++||+|+|||||+++|++..+.+.... ...+...+++++|..++|+++|+|++.....+.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 34578999999999999999999998888765321 01122345678999999999999999999999999
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC---cchHHHHHHHHHHhcCC-CeEEEEeccCCCCCCHHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG---VQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPYRVIN 341 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g---~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~~~~~~~~~ 341 (1043)
+..++|||||||.+|...+..+++.+|++++|+|+.++ ...++..++..+...+. |+++|+||+|+...+.+ .++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~-~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE-EFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH-HHH
Confidence 99999999999999999999999999999999999999 78888888777777775 57889999999753321 111
Q ss_pred HHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy11896 342 QMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 421 (1043)
Q Consensus 342 ~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~ 421 (1043)
.+.+.+
T Consensus 163 ~~~~ei-------------------------------------------------------------------------- 168 (426)
T TIGR00483 163 AIKKEV-------------------------------------------------------------------------- 168 (426)
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 111100
Q ss_pred hccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------HHHHHHHhCCCCCCCCccccccCcccce
Q psy11896 422 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDYLPNPGEVTNYAIENGQEDKK 489 (1043)
Q Consensus 422 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~ 489 (1043)
...++..-.....+|++.+||++|.|+.. |+++|.+ +|.|..
T Consensus 169 -----------~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~-------------- 222 (426)
T TIGR00483 169 -----------SNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEK-------------- 222 (426)
T ss_pred -----------HHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCC--------------
Confidence 00000000111235788889999999874 8888854 554421
Q ss_pred eeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEE
Q psy11896 490 VVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFA 568 (1043)
Q Consensus 490 ~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~ 568 (1043)
..+.||.+.|..++..++ |+++.|||.+|+++.||.|.+.+.+...+|.+|. ....++++|.|||.++
T Consensus 223 -------~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~----~~~~~~~~a~aG~~v~ 291 (426)
T TIGR00483 223 -------PTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIE----MHHEQIEQAEPGDNIG 291 (426)
T ss_pred -------ccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEE----ECCcccCEEcCCCEEE
Confidence 156899999999999888 9999999999999999999999888888999997 3346789999999998
Q ss_pred E--ccC---ccccCcEEe
Q psy11896 569 L--FGV---DCASGDTFV 581 (1043)
Q Consensus 569 i--~gl---~~~~Gdtl~ 581 (1043)
+ .++ ++..|++|+
T Consensus 292 i~l~~i~~~~i~rG~vl~ 309 (426)
T TIGR00483 292 FNVRGVSKKDIRRGDVCG 309 (426)
T ss_pred EEECCCChhhcccceEEe
Confidence 6 565 578899998
No 50
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.97 E-value=2.3e-29 Score=295.18 Aligned_cols=272 Identities=24% Similarity=0.297 Sum_probs=207.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCcee--eeeec----------CCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISE--MHEVR----------GKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~--~~~v~----------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
....||+++||+|+|||||+++|++.++.+.. .+.+. +...+++++|+.++|++||+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34578999999999999999999999998875 22221 1224567899999999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCC-CeEEEEeccCCCCCCHHHHHHHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPYRVINQM 343 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~~~~~~~~~~i 343 (1043)
++++++|||||||.+|..++..+++.+|++++|||+.+|+..||+.++..+...++ |+++|+||||+...+. +.++.+
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~-~~~~~i 183 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE-EVFERI 183 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchh-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999988886 5788999999874332 222222
Q ss_pred HHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhc
Q psy11896 344 RQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423 (1043)
Q Consensus 344 ~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~ 423 (1043)
.+.+. .+
T Consensus 184 ~~~l~-----------------------------------------------------------------------~~-- 190 (474)
T PRK05124 184 REDYL-----------------------------------------------------------------------TF-- 190 (474)
T ss_pred HHHHH-----------------------------------------------------------------------HH--
Confidence 22110 00
Q ss_pred cCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------HHHHHHHhCCCCCCCCccccccCcccceee
Q psy11896 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDYLPNPGEVTNYAIENGQEDKKVV 491 (1043)
Q Consensus 424 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~ 491 (1043)
+.. .......|++.+||++|.|++. |+++| +.+|.|..
T Consensus 191 ------------~~~-~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~~---------------- 240 (474)
T PRK05124 191 ------------AEQ-LPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRV---------------- 240 (474)
T ss_pred ------------HHh-cCCCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCCC----------------
Confidence 000 0001235778889999998864 55543 44554421
Q ss_pred eCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc
Q psy11896 492 LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 570 (1043)
Q Consensus 492 ~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~ 570 (1043)
..+.|+.+.|..++...+ ..-..|||.+|+|+.||+|++.+.+...+|.+|... ..++++|.|||.+++.
T Consensus 241 -----~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aG~~V~l~ 311 (474)
T PRK05124 241 -----VDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTF----DGDLEEAFAGEAITLV 311 (474)
T ss_pred -----CCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEc----CccccCcCCCCEEEEE
Confidence 156788888877654333 122468999999999999999998888999999833 3468999999999875
Q ss_pred cC---ccccCcEEe
Q psy11896 571 GV---DCASGDTFV 581 (1043)
Q Consensus 571 gl---~~~~Gdtl~ 581 (1043)
.- ++..|++|+
T Consensus 312 L~~~~~i~rG~VL~ 325 (474)
T PRK05124 312 LEDEIDISRGDLLV 325 (474)
T ss_pred eCCccccCCccEEE
Confidence 43 577899999
No 51
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.96 E-value=1.4e-28 Score=284.51 Aligned_cols=251 Identities=19% Similarity=0.226 Sum_probs=196.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe------------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW------------ 264 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------ 264 (1043)
+...||+++||+|||||||+.+|+. ..+|.+++|.+||+|++..+..+.+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg------------------~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~ 93 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSG------------------VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCY 93 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhC------------------CCcccchhhHHhCCchhccccccccccCcccCCcccc
Confidence 3457899999999999999999972 2456778999999999887765421
Q ss_pred ---c------------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-cchHHHHHHHHHHhcCCC-
Q psy11896 265 ---K------------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-VQSQTLTVNRQMKRYDVP- 321 (1043)
Q Consensus 265 ---~------------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-~~~~t~~~~~~~~~~~~p- 321 (1043)
. .+.++|||||||.+|..++.+++..+|++++||||.+| +.+||++++..+...+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~ 173 (460)
T PTZ00327 94 QSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKH 173 (460)
T ss_pred cccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCc
Confidence 0 24799999999999999999999999999999999996 799999999999888886
Q ss_pred eEEEEeccCCCCCC-HHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHH
Q psy11896 322 CIAFINKLDRLGAD-PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 400 (1043)
Q Consensus 322 ~ivviNKiD~~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~ 400 (1043)
+++|+||||+...+ ..+.++++.+.
T Consensus 174 iIVvlNKiDlv~~~~~~~~~~ei~~~------------------------------------------------------ 199 (460)
T PTZ00327 174 IIILQNKIDLVKEAQAQDQYEEIRNF------------------------------------------------------ 199 (460)
T ss_pred EEEEEecccccCHHHHHHHHHHHHHH------------------------------------------------------
Confidence 67899999987321 11111111110
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccc
Q psy11896 401 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA 480 (1043)
Q Consensus 401 ~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~ 480 (1043)
+.+ ......|++.+||++|.|++.|+++|.+.+|.|...
T Consensus 200 ---------------------l~~----------------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~---- 238 (460)
T PTZ00327 200 ---------------------VKG----------------TIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRD---- 238 (460)
T ss_pred ---------------------HHh----------------hccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCC----
Confidence 000 012346899999999999999999999999987421
Q ss_pred cccCcccceeeeCCCCCCCCCcEEEEEeeeecC---------CccEEEEEEecCeecCCCEEEecCCC------------
Q psy11896 481 IENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK---------FGQLTYMRCYQGKLRKGEMIYNVRTD------------ 539 (1043)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~---------~G~i~~~RV~sGtl~~gd~v~~~~~~------------ 539 (1043)
.+.|+.++|...+... .|.+..|+|.+|++++||.|.+.+.+
T Consensus 239 -----------------~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~ 301 (460)
T PTZ00327 239 -----------------LTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCR 301 (460)
T ss_pred -----------------CCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccc
Confidence 4678888888766432 28899999999999999999988643
Q ss_pred -cEEEeceEEEeccCCeeecCeecCCCEEEEc-----cC---ccccCcEEe
Q psy11896 540 -KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFV 581 (1043)
Q Consensus 540 -~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~Gdtl~ 581 (1043)
...+|.+|. ....++++|.||+.++|. ++ +...|+.|+
T Consensus 302 ~~~~~VksI~----~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~ 348 (460)
T PTZ00327 302 PIRTRIVSLF----AENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLG 348 (460)
T ss_pred cceEEEEEEE----ECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEE
Confidence 245788887 356789999999999884 44 456899998
No 52
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.96 E-value=2.8e-28 Score=293.44 Aligned_cols=251 Identities=24% Similarity=0.320 Sum_probs=199.8
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----CeeEEEE
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINII 272 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~li 272 (1043)
.+.++|+++||+|||||||+++|....... +..+|+|.......+.|. +..++||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~---------------------~e~~GiTq~i~~~~v~~~~~~~~~kItfi 300 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ---------------------KEAGGITQKIGAYEVEFEYKDENQKIVFL 300 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc---------------------ccCCccccccceEEEEEEecCCceEEEEE
Confidence 456899999999999999999997432211 224677776655555553 5899999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCce
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAA 352 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~ 352 (1043)
|||||.+|...+.++++.+|++|+|+|+.+|+..||.+.+..+...++|+++|+||+|+...+.++..+++... +.
T Consensus 301 DTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l--- 376 (742)
T CHL00189 301 DTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL--- 376 (742)
T ss_pred ECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc---
Confidence 99999999999999999999999999999999999999999999999999999999999865544333332110 00
Q ss_pred eeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHH
Q psy11896 353 FLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDI 432 (1043)
Q Consensus 353 ~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l 432 (1043)
+.+
T Consensus 377 ----------------------------------------------------------------l~e------------- 379 (742)
T CHL00189 377 ----------------------------------------------------------------IPE------------- 379 (742)
T ss_pred ----------------------------------------------------------------chH-------------
Confidence 000
Q ss_pred HHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeec
Q psy11896 433 KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG 512 (1043)
Q Consensus 433 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d 512 (1043)
..+..+|++++||++|.|++.|+++|..+.+.+. +.++ ++.|+.++|+++..|
T Consensus 380 --------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~-----------------lk~~--~~~~~~g~V~e~~iD 432 (742)
T CHL00189 380 --------KWGGDTPMIPISASQGTNIDKLLETILLLAEIED-----------------LKAD--PTQLAQGIILEAHLD 432 (742)
T ss_pred --------hhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc-----------------ccCC--CCCCceEEEEEEEEc
Confidence 0123579999999999999999999987743211 0112 678999999999999
Q ss_pred CC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-c-cccCcEEe
Q psy11896 513 KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-D-CASGDTFV 581 (1043)
Q Consensus 513 ~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~Gdtl~ 581 (1043)
++ |.++++||++|+|+.||.|++.+ +.++++.+.+....++++|.||++|.|.|+ + ..+||+|.
T Consensus 433 ~~~G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~ 499 (742)
T CHL00189 433 KTKGPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQ 499 (742)
T ss_pred CCCceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEE
Confidence 88 99999999999999999998875 356777777888889999999999999999 3 56899987
No 53
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-28 Score=253.13 Aligned_cols=268 Identities=27% Similarity=0.375 Sum_probs=201.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
...-||+.+||+|+|||||+.+|......... ....-..-.|..|+|++|||||..+...++..+..+-.+||||
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~-----~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGG-----AEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhcc-----ccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCC
Confidence 44679999999999999999999744321110 0000012356789999999999999999999999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.||.+.|+.+....|++|+||.|.+|..+||++++-++++.++|. ++|+||+|.... . +.++.+.
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd-~-ellelVe----------- 151 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD-E-ELLELVE----------- 151 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc-H-HHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999985 577899999841 1 1111110
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
.|++..
T Consensus 152 --------------------------------------------------------------------------mEvreL 157 (394)
T COG0050 152 --------------------------------------------------------------------------MEVREL 157 (394)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011111
Q ss_pred HHHhhhcCccEEEEEeeccCCC--------CHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNK--------GVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~--------Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
|...-..+.-.||..|||+.-- .|.+|++++.+|+|.|... .+.||.+.|-
T Consensus 158 Ls~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~---------------------~dkPflmpvE 216 (394)
T COG0050 158 LSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD---------------------IDKPFLMPVE 216 (394)
T ss_pred HHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc---------------------ccccccccce
Confidence 1111223344577777776432 2689999999999999532 6899999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecCCC--cEEEeceEEEeccCCeeecCeecCCCEEE--EccC---ccccCcE
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFGV---DCASGDT 579 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~--~~~ki~~l~~~~g~~~~~v~~a~aGdIv~--i~gl---~~~~Gdt 579 (1043)
.++...+ |.++++||-+|+|+.|+.+.+..-. ++..++.+- .-+..+++..|||-++ +.|. ++..|..
T Consensus 217 dvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgve----mfrk~ld~~~AGdnvg~llRg~~r~~veRGqv 292 (394)
T COG0050 217 DVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVE----MFRKLLDEGQAGDNVGVLLRGVKREDVERGQV 292 (394)
T ss_pred eeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHH----HHHHHHhccccCCCcceEEEeccccceecceE
Confidence 9998876 9999999999999999999887543 222333322 1234568899999886 4565 6778999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 293 La 294 (394)
T COG0050 293 LA 294 (394)
T ss_pred ee
Confidence 98
No 54
>KOG0460|consensus
Probab=99.96 E-value=1.2e-28 Score=257.91 Aligned_cols=265 Identities=29% Similarity=0.388 Sum_probs=203.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccc--cccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNV--GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~--~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.--||+-+||+|+|||||+.++....... ++..+ ..-.|.-|+|+.|||||....+.++.....+--+|||
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~-------g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCP 125 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEK-------GGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCP 125 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhc-------cccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCC
Confidence 34689999999999999999997432111 11111 1125777899999999999998888888899999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
||.||.+.|+.+....|++|+||.|.+|..+||++++-+|++-+++ +++|+||.|..... +.++-+.
T Consensus 126 GHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~--e~leLVE---------- 193 (449)
T KOG0460|consen 126 GHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDP--EMLELVE---------- 193 (449)
T ss_pred chHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCH--HHHHHHH----------
Confidence 9999999999999999999999999999999999999999999997 56789999987321 1111000
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
-|+++
T Consensus 194 ---------------------------------------------------------------------------mE~RE 198 (449)
T KOG0460|consen 194 ---------------------------------------------------------------------------MEIRE 198 (449)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 01111
Q ss_pred HHHHhhhcCccEEEEEeeccCC-------CC---HHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEE
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKN-------KG---VQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIA 504 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~-------~G---v~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 504 (1043)
.|..--..+.-+||++|||+.- .| |..|||++.+|+|.|.. +.+.||++
T Consensus 199 lLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R---------------------~~~~pFl~ 257 (449)
T KOG0460|consen 199 LLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER---------------------DLDKPFLL 257 (449)
T ss_pred HHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc---------------------ccCCCcee
Confidence 1222223344579999998732 23 67899999999999953 26889999
Q ss_pred EEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCc--EEEeceEEEeccCCeeecCeecCCCEEE--EccC---cccc
Q psy11896 505 LAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFGV---DCAS 576 (1043)
Q Consensus 505 ~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~--~~ki~~l~~~~g~~~~~v~~a~aGdIv~--i~gl---~~~~ 576 (1043)
.|-.++..++ |+++.+|+-+|+|++|+++-+...++ +..|+.|.. -+..+++|.|||-++ +.|+ +++.
T Consensus 258 pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiem----F~K~ld~a~AGDn~G~LlRGik~~dvkR 333 (449)
T KOG0460|consen 258 PIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEM----FRKSLDEAQAGDNLGALLRGIKREDVKR 333 (449)
T ss_pred ehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHH----HHHHHHhcccccceehhhhcCCHHHHhc
Confidence 9999999988 99999999999999999998876554 334555431 234689999999997 5677 7789
Q ss_pred CcEEe
Q psy11896 577 GDTFV 581 (1043)
Q Consensus 577 Gdtl~ 581 (1043)
|..++
T Consensus 334 Gmvl~ 338 (449)
T KOG0460|consen 334 GMVLA 338 (449)
T ss_pred ccEEe
Confidence 99888
No 55
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.96 E-value=2e-27 Score=285.74 Aligned_cols=246 Identities=24% Similarity=0.316 Sum_probs=199.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG~~d 279 (1043)
.|+++||+|+|||||+++|+.. .+|..++|++||+|++..+..+.. ++..++|||||||.+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~ 63 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK 63 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC------------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH
Confidence 4899999999999999999621 256777899999999988777755 467899999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCC-HHHHHHHHHHHhCCCceeeeec
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGAD-PYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~-~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
|...+..++..+|++++|||+.+|+.+||++++..+...++|. ++|+||+|+...+ .++..+++.+.+
T Consensus 64 fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l---------- 133 (614)
T PRK10512 64 FLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL---------- 133 (614)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999998899985 6999999986311 111111111110
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
.+
T Consensus 134 -----------------------------------------------------------------~~------------- 135 (614)
T PRK10512 134 -----------------------------------------------------------------RE------------- 135 (614)
T ss_pred -----------------------------------------------------------------Hh-------------
Confidence 00
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
......|++.+||++|.|++.|++.|..+.+ |... .++|+.+.|..++..++ |.
T Consensus 136 ---~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~-~~~~---------------------~~~~~rl~Id~vf~v~G~Gt 190 (614)
T PRK10512 136 ---YGFAEAKLFVTAATEGRGIDALREHLLQLPE-REHA---------------------AQHRFRLAIDRAFTVKGAGL 190 (614)
T ss_pred ---cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc-cccC---------------------cCCCceEEEEEEeccCCCeE
Confidence 0011358899999999999999999987643 3211 46899999999998887 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--cc-C---ccccCcEEe
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FG-V---DCASGDTFV 581 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~g-l---~~~~Gdtl~ 581 (1043)
++.|+|.+|+++.||+|.+.+.+...+|.+|. ....++++|.||+.+++ .| + ++..||+|+
T Consensus 191 VvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq----~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~ 257 (614)
T PRK10512 191 VVTGTALSGEVKVGDTLWLTGVNKPMRVRGLH----AQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLL 257 (614)
T ss_pred EEEEEEecceEecCCEEEEcCCCCcEEEEEEe----cCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEe
Confidence 99999999999999999999888888898887 34568999999999986 56 5 578999998
No 56
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.95 E-value=9.9e-27 Score=269.16 Aligned_cols=250 Identities=24% Similarity=0.300 Sum_probs=195.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec------------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------ 265 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 265 (1043)
+-.||+++||.|||||||+++|.. .++|..++|++||+|+......+.|.
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~------------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTG------------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYT 69 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhC------------------eecccCHhHHhcCcEEEecccccccccccccCcccccc
Confidence 347899999999999999999941 25788899999999999876544432
Q ss_pred --------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEecc
Q psy11896 266 --------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKL 329 (1043)
Q Consensus 266 --------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKi 329 (1043)
.+.++|||||||.+|...+..++..+|++++|+|+.+|. ..++..++..+...++ |+++|+||+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~ 149 (411)
T PRK04000 70 TEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKI 149 (411)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEee
Confidence 268999999999999999999999999999999999998 8999999988888877 588999999
Q ss_pred CCCCCCHH-HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHH
Q psy11896 330 DRLGADPY-RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIE 408 (1043)
Q Consensus 330 D~~~~~~~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e 408 (1043)
|+...+.. +..+++.+
T Consensus 150 Dl~~~~~~~~~~~~i~~--------------------------------------------------------------- 166 (411)
T PRK04000 150 DLVSKERALENYEQIKE--------------------------------------------------------------- 166 (411)
T ss_pred ccccchhHHHHHHHHHH---------------------------------------------------------------
Confidence 98642210 01111111
Q ss_pred HHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccc
Q psy11896 409 HVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDK 488 (1043)
Q Consensus 409 ~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~ 488 (1043)
++.. ......|++.+||++|.|++.|++.|...+|.|...
T Consensus 167 ------------~l~~----------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~------------ 206 (411)
T PRK04000 167 ------------FVKG----------------TVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERD------------ 206 (411)
T ss_pred ------------Hhcc----------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCC------------
Confidence 0000 001235889999999999999999999999877421
Q ss_pred eeeeCCCCCCCCCcEEEEEeeeecC--------C-ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceE
Q psy11896 489 KVVLNPSRDGKHPFIALAFKLEAGK--------F-GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRL 547 (1043)
Q Consensus 489 ~~~~~~~~~~~~p~~~~V~K~~~d~--------~-G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l 547 (1043)
.+.|+.+.|..++... + |.+..|||.+|++++||.|.+.+.+. ..+|.+|
T Consensus 207 ---------~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI 277 (411)
T PRK04000 207 ---------LDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSL 277 (411)
T ss_pred ---------CCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEE
Confidence 4678999998887432 2 67999999999999999999987542 4578888
Q ss_pred EEeccCCeeecCeecCCCEEEEc-----cC---ccccCcEEe
Q psy11896 548 VRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFV 581 (1043)
Q Consensus 548 ~~~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~Gdtl~ 581 (1043)
. ....++++|.|||.+++. ++ ++..|+.|+
T Consensus 278 ~----~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~ 315 (411)
T PRK04000 278 R----AGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAG 315 (411)
T ss_pred E----ECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEE
Confidence 6 335788999999998874 44 467899998
No 57
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.95 E-value=3.9e-28 Score=252.78 Aligned_cols=133 Identities=41% Similarity=0.516 Sum_probs=120.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE--ecCeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDtP 275 (1043)
++|||+++||+|||||||+++|+...+.+...+..... .+.+|..+.|.++|+|+......+. +.++.++|||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtP 78 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETK---NAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTP 78 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHH---HCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEES
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccc---cccccccchhhhcccccccccccccccccccceeecccc
Confidence 58999999999999999999999888877654333211 3468899999999999999999999 999999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
||.+|..++.++++.+|++|+|||+.+|+..++..++..+...++|+++|+||||+..
T Consensus 79 G~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 79 GHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE 136 (188)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH
T ss_pred cccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh
Confidence 9999999999999999999999999999999999999999999999999999999983
No 58
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.95 E-value=6.4e-27 Score=286.11 Aligned_cols=268 Identities=23% Similarity=0.269 Sum_probs=203.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceee------------eeecCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEM------------HEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~------------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
.||+++||+|+|||||+++|++..+.+... |...+...+++++|..++|++||+|++.....+.+++.
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~ 104 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKR 104 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCc
Confidence 469999999999999999999999887631 11112234567899999999999999999999999999
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCC-CeEEEEeccCCCCCCHHHHHHHHHHH
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPYRVINQMRQK 346 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~~~~~~~~~~i~~~ 346 (1043)
+++|||||||.+|...+..++..+|++++|||+.+|+..||..++..+...++ |+++|+||+|+...+. +.++.+...
T Consensus 105 ~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~-~~~~~i~~~ 183 (632)
T PRK05506 105 KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQ-EVFDEIVAD 183 (632)
T ss_pred eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchh-HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988886 5678999999874222 112221111
Q ss_pred hCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCC
Q psy11896 347 VGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKS 426 (1043)
Q Consensus 347 l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~ 426 (1043)
+. .++.
T Consensus 184 i~-----------------------------------------------------------------------~~~~--- 189 (632)
T PRK05506 184 YR-----------------------------------------------------------------------AFAA--- 189 (632)
T ss_pred HH-----------------------------------------------------------------------HHHH---
Confidence 10 0000
Q ss_pred CCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------HHHHHHHHhCCCCCCCCccccccCcccceeeeCC
Q psy11896 427 ISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNP 494 (1043)
Q Consensus 427 ~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~ 494 (1043)
+ ... ...|++++||++|.|+. .|+++|... |.|...
T Consensus 190 -----------~-~~~-~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~-~~~~~~------------------ 237 (632)
T PRK05506 190 -----------K-LGL-HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV-EIASDR------------------ 237 (632)
T ss_pred -----------H-cCC-CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC-CCCCCc------------------
Confidence 0 000 12467778999999986 477666543 433211
Q ss_pred CCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-
Q psy11896 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV- 572 (1043)
Q Consensus 495 ~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl- 572 (1043)
.++|+.+.|..++...+ +.-..|+|.+|+|++||+|.+.+.+...+|.+|. ....++++|.|||.+++.--
T Consensus 238 ---~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~----~~~~~~~~a~aG~~v~i~l~~ 310 (632)
T PRK05506 238 ---NLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIV----TPDGDLDEAFAGQAVTLTLAD 310 (632)
T ss_pred ---CCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEE----ECCceeCEEcCCCeEEEEecC
Confidence 46788887776655332 2225699999999999999999888889999997 33456899999999987532
Q ss_pred --ccccCcEEe
Q psy11896 573 --DCASGDTFV 581 (1043)
Q Consensus 573 --~~~~Gdtl~ 581 (1043)
++..|++|+
T Consensus 311 ~~~i~rG~vL~ 321 (632)
T PRK05506 311 EIDISRGDMLA 321 (632)
T ss_pred ccccCCccEEe
Confidence 577899999
No 59
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.95 E-value=4.1e-26 Score=264.51 Aligned_cols=250 Identities=24% Similarity=0.318 Sum_probs=194.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec------------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------ 265 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 265 (1043)
...||+++||+|+|||||+++|.. ..+|..++|++||+|+......+.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~------------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 64 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTG------------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYT 64 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhC------------------eecccCHhHHHcCceeEecccccccccccccCcccccc
Confidence 346899999999999999999941 24678889999999999876544321
Q ss_pred --------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEecc
Q psy11896 266 --------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKL 329 (1043)
Q Consensus 266 --------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKi 329 (1043)
+..+++||||||.+|...+..++..+|++++|+|+.+|. ..||.+++..+...++ |+++|+||+
T Consensus 65 ~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~ 144 (406)
T TIGR03680 65 TEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKI 144 (406)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 468999999999999999999999999999999999998 8999999998888876 478999999
Q ss_pred CCCCCCHH-HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHH
Q psy11896 330 DRLGADPY-RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIE 408 (1043)
Q Consensus 330 D~~~~~~~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e 408 (1043)
|+...+.. +.++++.+
T Consensus 145 Dl~~~~~~~~~~~~i~~--------------------------------------------------------------- 161 (406)
T TIGR03680 145 DLVSKEKALENYEEIKE--------------------------------------------------------------- 161 (406)
T ss_pred ccCCHHHHHHHHHHHHh---------------------------------------------------------------
Confidence 98742210 11111111
Q ss_pred HHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccc
Q psy11896 409 HVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDK 488 (1043)
Q Consensus 409 ~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~ 488 (1043)
++. .. ...-+|++.+||++|.|++.|+++|.+++|.|...
T Consensus 162 ------------~l~--------------~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~------------ 201 (406)
T TIGR03680 162 ------------FVK--------------GT--VAENAPIIPVSALHNANIDALLEAIEKFIPTPERD------------ 201 (406)
T ss_pred ------------hhh--------------hc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCC------------
Confidence 000 00 01235889999999999999999999999877321
Q ss_pred eeeeCCCCCCCCCcEEEEEeeeecC--------C-ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceE
Q psy11896 489 KVVLNPSRDGKHPFIALAFKLEAGK--------F-GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRL 547 (1043)
Q Consensus 489 ~~~~~~~~~~~~p~~~~V~K~~~d~--------~-G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l 547 (1043)
.+.|+.++|..++... + |.+..|||.+|+|++||.|.+.+.+. ..+|.+|
T Consensus 202 ---------~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI 272 (406)
T TIGR03680 202 ---------LDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSL 272 (406)
T ss_pred ---------CCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEE
Confidence 4678999999877532 2 66899999999999999999986531 3477787
Q ss_pred EEeccCCeeecCeecCCCEEEEc-----cC---ccccCcEEe
Q psy11896 548 VRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFV 581 (1043)
Q Consensus 548 ~~~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~Gdtl~ 581 (1043)
. ....++++|.|||.+++. ++ ++..|+.|+
T Consensus 273 ~----~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~ 310 (406)
T TIGR03680 273 R----AGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVG 310 (406)
T ss_pred E----ECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEE
Confidence 7 345789999999999973 44 567899998
No 60
>KOG0469|consensus
Probab=99.94 E-value=9.5e-28 Score=260.65 Aligned_cols=197 Identities=20% Similarity=0.273 Sum_probs=151.1
Q ss_pred HHhcCCC--eeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCeeeEEEee-------ecccceeeeeeec
Q psy11896 621 RFTKEDP--TFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETL-------VQPFDFDYLHKKQ 691 (1043)
Q Consensus 621 ~l~~eDp--sl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V~yrEti-------~~~~~~~~~~~~~ 691 (1043)
-|..+|| |++..+++++.++.++-...-|-.+.+...--.-++...+..-.|+-|.-. .+..+|+
T Consensus 553 Plk~sdPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~d------ 626 (842)
T KOG0469|consen 553 PLKKSDPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWD------ 626 (842)
T ss_pred ceecCCCeeeeecccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCc------
Confidence 4566777 444456778888888888888877665432111122222222222222111 1111221
Q ss_pred cCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccc--cC
Q psy11896 692 SGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VD 769 (1043)
Q Consensus 692 ~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~--~~ 769 (1043)
-.+++-+|-+.|- ..+++.++|.+.+.++-+++.+++..||+||.++|||+|+.|+++||.+.|.-.|. +|
T Consensus 627 ----vt~aRKIWCfgPd---~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIH 699 (842)
T KOG0469|consen 627 ----VTEARKIWCFGPD---GTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIH 699 (842)
T ss_pred ----hhhhheeeEeCCC---CCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhh
Confidence 1246667777663 35678889999999999999999999999999999999999999999999999997 67
Q ss_pred ChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCC
Q psy11896 770 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK 830 (1043)
Q Consensus 770 ~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~ 830 (1043)
.+.+++++.+||++|.+++.|.|+|+||+|.+||+||+.++|.+++.|+++||++.+++.-
T Consensus 700 RGggQiipt~rr~~ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~ 760 (842)
T KOG0469|consen 700 RGGGQIIPTARRVLYASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQV 760 (842)
T ss_pred cCCCeechHHHHHHHHHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceeccccc
Confidence 8889999999999999999999999999999999999999999999999999999987653
No 61
>PTZ00416 elongation factor 2; Provisional
Probab=99.94 E-value=1.5e-24 Score=270.61 Aligned_cols=134 Identities=20% Similarity=0.335 Sum_probs=115.0
Q ss_pred EEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccc--cCChhhHHHHHH
Q psy11896 702 IGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNEISFILAA 779 (1043)
Q Consensus 702 ~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~--~~~~~~~~~~a~ 779 (1043)
.|.+.| ...+++.++|.+.+..+.++++++|++||+||+.+|||||+||+||+|+|.||++|. +++.+++|++|+
T Consensus 627 i~~f~~---~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~ 703 (836)
T PTZ00416 627 IWCFGP---ENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTA 703 (836)
T ss_pred eeeccC---CCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHH
Confidence 344544 234567777777665555566669999999999999999999999999999999998 788899999999
Q ss_pred HHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCC--ceeeeh
Q psy11896 780 HGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYA 838 (1043)
Q Consensus 780 ~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~--~~~~~~ 838 (1043)
++||++|+++|.++||||+|.++|.+|++++|.|+++|++|||.+..++..++ +..|.|
T Consensus 704 ~~a~~~a~~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a 764 (836)
T PTZ00416 704 RRVFYACELTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKA 764 (836)
T ss_pred HHHHHHHHhhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999998876544 245544
No 62
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.94 E-value=6.7e-26 Score=272.07 Aligned_cols=250 Identities=24% Similarity=0.313 Sum_probs=200.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++||+|||||||+++|+.. .+|..+.|..+|+|++.....+.+++..+++||||||.+|
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f 63 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGI------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF 63 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCc------------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH
Confidence 6999999999999999999621 1456678899999999998889999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeeccc
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIG 359 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~ 359 (1043)
...+..++..+|++++|+|+.+|+.+||.+++..+...++| +++|+||+|+...+. ++.+.+.+
T Consensus 64 ~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~---~~~~~~ei------------ 128 (581)
T TIGR00475 64 ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEE---IKRTEMFM------------ 128 (581)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHH---HHHHHHHH------------
Confidence 99999999999999999999999999999999999889999 999999999874211 11111000
Q ss_pred cCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHh
Q psy11896 360 LGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRS 439 (1043)
Q Consensus 360 ~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~ 439 (1043)
..++. .
T Consensus 129 -----------------------------------------------------------~~~l~--------------~- 134 (581)
T TIGR00475 129 -----------------------------------------------------------KQILN--------------S- 134 (581)
T ss_pred -----------------------------------------------------------HHHHH--------------H-
Confidence 00000 0
Q ss_pred hhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEE
Q psy11896 440 TLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLT 518 (1043)
Q Consensus 440 ~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~ 518 (1043)
.......|++.+||++|.|++.+.+.+...++..... . .++|+.+.|..++..++ |.++
T Consensus 135 ~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~------------------~--~~~p~r~~Id~~f~v~G~GtVv 194 (581)
T TIGR00475 135 YIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK------------------R--IQKPLRMAIDRAFKVKGAGTVV 194 (581)
T ss_pred hCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCc------------------C--cCCCcEEEEEEEEecCCcEEEE
Confidence 0001125888999999999999999988776543211 0 46899999999998877 9999
Q ss_pred EEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcEEe
Q psy11896 519 YMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 519 ~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
.|+|.+|+++.||+|.+.+.+...+|.+|. .+..++++|.||+.+++ .|+ ++..|..++
T Consensus 195 ~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq----~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~ 258 (581)
T TIGR00475 195 TGTAFSGEVKVGDNLRLLPINHEVRVKAIQ----AQNQDVEIAYAGQRIALNLMDVEPESLKRGLLIL 258 (581)
T ss_pred EEEEecceEecCCEEEECCCCceEEEeEEE----ECCccCCEEECCCEEEEEeCCCCHHHcCCceEEc
Confidence 999999999999999999988889999997 33567899999999985 566 467884444
No 63
>KOG0458|consensus
Probab=99.94 E-value=1.6e-25 Score=251.77 Aligned_cols=279 Identities=24% Similarity=0.312 Sum_probs=212.2
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeee---------e-ecCCccccccccchhhhhhcCceEeeeeEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH---------E-VRGKDNVGAVMDSMELERQRGITIQSAATY 261 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~---------~-v~~~~~~~~~~d~~~~e~~~giTi~~~~~~ 261 (1043)
.+..+....+.+++||+|+|||||+.+|++..+.+.... . ......+++++|...+|++||+|++.....
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~ 249 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW 249 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence 344455678999999999999999999999988876421 1 122256889999999999999999999999
Q ss_pred EEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCC
Q psy11896 262 TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLG 333 (1043)
Q Consensus 262 ~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~ 333 (1043)
++-+.+.++|+|+|||-||...++.+...+|.+++||||..| ...||+++...++..|+. .++++||||..+
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS 329 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence 999999999999999999999999999999999999999854 468999999999999985 678899999998
Q ss_pred CCHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC
Q psy11896 334 ADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 413 (1043)
Q Consensus 334 ~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~ 413 (1043)
++. +..++|...++... .+.+
T Consensus 330 Wsq-~RF~eIk~~l~~fL-------------------------------------------------------~~~~--- 350 (603)
T KOG0458|consen 330 WSQ-DRFEEIKNKLSSFL-------------------------------------------------------KESC--- 350 (603)
T ss_pred ccH-HHHHHHHHHHHHHH-------------------------------------------------------HHhc---
Confidence 764 33334443333110 0000
Q ss_pred ChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCH---------------HHHHHHHHHhCCCCCCCCc
Q psy11896 414 DEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGV---------------QTLLDAVLDYLPNPGEVTN 478 (1043)
Q Consensus 414 dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv---------------~~Lld~i~~~lPsp~~~~~ 478 (1043)
.+... .-.|+|+ |+++|+++ ..||+.|.. +-.|..
T Consensus 351 ------------gf~es-----------~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~--- 400 (603)
T KOG0458|consen 351 ------------GFKES-----------SVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPER--- 400 (603)
T ss_pred ------------CcccC-----------CcceEec---ccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCC---
Confidence 00000 0023443 44555444 245666655 333321
Q ss_pred cccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeee
Q psy11896 479 YAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMED 557 (1043)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~ 557 (1043)
..+.||++-|..++..+. |...+|||.||.+.+||+||+........|.+|. .+..+
T Consensus 401 ------------------~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~----~~~~~ 458 (603)
T KOG0458|consen 401 ------------------PIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLT----SNDEP 458 (603)
T ss_pred ------------------cccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeee----cCCCc
Confidence 145699999999999877 8889999999999999999999888888888887 55677
Q ss_pred cCeecCCCEEEE--ccC---ccccCcEEe
Q psy11896 558 VEEVLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 558 v~~a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
...+.|||-|.+ .|+ .+..|++++
T Consensus 459 ~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 459 KTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred ceeEeeCCEEEEecCccChhhcccceeee
Confidence 888999999874 565 467898887
No 64
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.94 E-value=1.6e-25 Score=236.58 Aligned_cols=140 Identities=48% Similarity=0.637 Sum_probs=122.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----------CeeE
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----------DHNI 269 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------~~~i 269 (1043)
|||+++||+|+|||||+++|++.++.+.+.. .+. .+++|+.+.|++||+|++++..++.|. ++.+
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i 75 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLI 75 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCc---eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEE
Confidence 7999999999999999999999888776532 222 568999999999999999998888876 7889
Q ss_pred EEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC----CCCHHHHHHHHH
Q psy11896 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL----GADPYRVINQMR 344 (1043)
Q Consensus 270 ~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~~~~~~~~~~i~ 344 (1043)
+|||||||.+|..++..+++.+|++++|+|+.+|+..+|+.+++.+...++|+++|+||+|+. ..++++.++.+.
T Consensus 76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~ 154 (222)
T cd01885 76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLA 154 (222)
T ss_pred EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 234444444433
No 65
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.2e-25 Score=242.42 Aligned_cols=245 Identities=29% Similarity=0.424 Sum_probs=206.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
.|+..||+++|||||+.++. ...+|..++|++||+|++....++..+++.+.|||.|||++|
T Consensus 2 ii~t~GhidHgkT~L~~alt------------------g~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~ 63 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT------------------GGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF 63 (447)
T ss_pred eEEEeeeeeccchhhhhhhc------------------ccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH
Confidence 47899999999999999995 235788999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeeccc
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIG 359 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~ 359 (1043)
...+..++...|.|++|||+.+|+..||.+++..+...+++. ++|+||+|+... ..+-+.+
T Consensus 64 i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i---------------- 125 (447)
T COG3276 64 ISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKI---------------- 125 (447)
T ss_pred HHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHH----------------
Confidence 999999999999999999999999999999999999999998 899999998732 1111111
Q ss_pred cCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHh
Q psy11896 360 LGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRS 439 (1043)
Q Consensus 360 ~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~ 439 (1043)
.+++..+.
T Consensus 126 --------------------------------------------~~Il~~l~---------------------------- 133 (447)
T COG3276 126 --------------------------------------------KQILADLS---------------------------- 133 (447)
T ss_pred --------------------------------------------HHHHhhcc----------------------------
Confidence 11111110
Q ss_pred hhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEE
Q psy11896 440 TLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLT 518 (1043)
Q Consensus 440 ~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~ 518 (1043)
-.-.|+|..|+.+|.|+++|-+.|.+..- +.+ ++.+.||+.+|-..+..++ |++.
T Consensus 134 ---l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~e--------------------~d~~~~fri~IDraFtVKGvGTVV 189 (447)
T COG3276 134 ---LANAKIFKTSAKTGRGIEELKNELIDLLE-EIE--------------------RDEQKPFRIAIDRAFTVKGVGTVV 189 (447)
T ss_pred ---cccccccccccccCCCHHHHHHHHHHhhh-hhh--------------------hccCCceEEEEeeEEEeccccEEE
Confidence 11236788899999999999998887664 211 1268999999999999998 9999
Q ss_pred EEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcEEe
Q psy11896 519 YMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 519 ~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
.|-++||+++.||.++..+.++..+|.+|. ..-.++++|.||+-|++ .|. ++..|+.|+
T Consensus 190 tGtv~sG~V~v~D~L~l~p~~k~v~VRsIq----~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~ 253 (447)
T COG3276 190 TGTVLSGEVKVGDKLYLSPINKEVRVRSIQ----AHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLL 253 (447)
T ss_pred EeEEeeeeEEECCEEEEecCCCeEEEEeee----ecCcchhhccccceeeeecCCCCHHHhhcccEec
Confidence 999999999999999999999999999998 55567899999999985 455 456899888
No 66
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.3e-23 Score=237.21 Aligned_cols=248 Identities=29% Similarity=0.361 Sum_probs=193.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEcCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPG 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDtPG 276 (1043)
+-|+++||+|||||||++.+-..+ +..+ -..|||.+.....+.+. ...+.||||||
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~--------Va~~-------------EaGGITQhIGA~~v~~~~~~~~~itFiDTPG 64 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTN--------VAAG-------------EAGGITQHIGAYQVPLDVIKIPGITFIDTPG 64 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCc--------cccc-------------cCCceeeEeeeEEEEeccCCCceEEEEcCCc
Confidence 569999999999999999995322 1112 25689999998888884 57999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.-|+....++...+|.+|+|||+.+|+.+||.+.+..++..++|+++++||||++.++++....++.+. +..
T Consensus 65 HeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~------ 137 (509)
T COG0532 65 HEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLV------ 137 (509)
T ss_pred HHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCC------
Confidence 9999999999999999999999999999999999999999999999999999999998887777666552 110
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
.|.
T Consensus 138 -------------------------------------------------------------~E~---------------- 140 (509)
T COG0532 138 -------------------------------------------------------------PEE---------------- 140 (509)
T ss_pred -------------------------------------------------------------Hhh----------------
Confidence 001
Q ss_pred HHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-c
Q psy11896 437 RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-G 515 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G 515 (1043)
++.-+.++.+||++|+|+++||++|.-.-- . + .+..+ +++|..+.|.-...+++ |
T Consensus 141 -----~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae----v--~-----------elka~--~~~~a~gtviE~~~dkG~G 196 (509)
T COG0532 141 -----WGGDVIFVPVSAKTGEGIDELLELILLLAE----V--L-----------ELKAN--PEGPARGTVIEVKLDKGLG 196 (509)
T ss_pred -----cCCceEEEEeeccCCCCHHHHHHHHHHHHH----H--H-----------hhhcC--CCCcceEEEEEEEeccCCC
Confidence 122356777899999999999999864221 0 0 11222 78899999999888888 9
Q ss_pred cEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-cc-ccCcEEe
Q psy11896 516 QLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDTFV 581 (1043)
Q Consensus 516 ~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdtl~ 581 (1043)
.++.+-|+.|||+.||.+...... .+|..++ -....+++.+.++--+-+.|+ +. ..||.+.
T Consensus 197 ~vatviv~~GtL~~GD~iv~g~~~--g~I~t~v---~~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~ 259 (509)
T COG0532 197 PVATVIVQDGTLKKGDIIVAGGEY--GRVRTMV---DDLGKPIKEAGPSKPVEILGLSEVPAAGDVFI 259 (509)
T ss_pred ceEEEEEecCeEecCCEEEEccCC--CceEEee---hhcCCCccccCCCCCeEEeccccccccCceEE
Confidence 999999999999999999887532 2444444 344556777888877788888 33 4566665
No 67
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.92 E-value=1e-24 Score=221.08 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=92.1
Q ss_pred hcccccCCCcccccceeeccCCCCcccchhhHHH--HHhhhhhhhhhcCccccccccceEEEEecCcccc--CCCChhHH
Q psy11896 841 CEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFI--LAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNEISF 916 (1043)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~--~~~~~~~~ 916 (1043)
..++|+|||+..|||++++++.+..++...+... .|+.|||||+.+||||+|||+||+|+|.++.+|+ .+++++||
T Consensus 73 ~~~iw~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi 152 (178)
T cd01683 73 ARSIWAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQI 152 (178)
T ss_pred hcCeEEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHH
Confidence 4679999999999999999988766655444442 6899999999999999999999999999999998 78889999
Q ss_pred HHHHHHHHHHHHHhcCceeecceEEE
Q psy11896 917 ILAAHGAMKQAYEEGVWQILEPIMSV 942 (1043)
Q Consensus 917 ~~~~~~a~~~a~~~~~~~llEP~~~~ 942 (1043)
++|+|+||++||++|+||||||||.|
T Consensus 153 ~~aar~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 153 IPTARRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHHHHHCCCEEEcceEeC
Confidence 99999999999999999999999975
No 68
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.8e-24 Score=226.18 Aligned_cols=309 Identities=21% Similarity=0.236 Sum_probs=206.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCcee-----e-------eeecCCccccccccchhhhhhcCceEeeeeEEEEec
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISE-----M-------HEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK 265 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~-----~-------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 265 (1043)
...++..+|++|.|||||+.+|++.++.+.. . +.-.+.-.++-+.|-++.|++.||||+.++..|...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4567999999999999999999988766543 1 111122346668899999999999999999999999
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMR 344 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~ 344 (1043)
..++.+.|||||+.|...|..+.+-||.+|++|||..|+..||+++.-.+...+++ +++.+||||+.+.+. +..++|.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e-~~F~~I~ 163 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE-EVFEAIV 163 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH-HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997 567799999996553 3333333
Q ss_pred HHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc
Q psy11896 345 QKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEE 424 (1043)
Q Consensus 345 ~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~ 424 (1043)
..+... .+.|
T Consensus 164 ~dy~~f--------------------------------------------------------a~~L-------------- 173 (431)
T COG2895 164 ADYLAF--------------------------------------------------------AAQL-------------- 173 (431)
T ss_pred HHHHHH--------------------------------------------------------HHHc--------------
Confidence 322100 0000
Q ss_pred CCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccC-cccceeeeCCCCCCCCCcE
Q psy11896 425 KSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENG-QEDKKVVLNPSRDGKHPFI 503 (1043)
Q Consensus 425 ~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~ 503 (1043)
.+..-.++|+ ||+.|.+|-. + ....++|..+.- +--+.+.+..+ ...+||+
T Consensus 174 --------------~~~~~~~IPi---SAl~GDNV~~---------~-s~~mpWY~GptLLe~LE~v~i~~~-~~~~~~R 225 (431)
T COG2895 174 --------------GLKDVRFIPI---SALLGDNVVS---------K-SENMPWYKGPTLLEILETVEIADD-RSAKAFR 225 (431)
T ss_pred --------------CCCcceEEec---hhccCCcccc---------c-ccCCCcccCccHHHHHhhcccccc-cccccee
Confidence 0001122333 5555544410 0 011122211110 00000011111 1334555
Q ss_pred EEEEeeeec-CCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEcc---CccccCcE
Q psy11896 504 ALAFKLEAG-KFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFG---VDCASGDT 579 (1043)
Q Consensus 504 ~~V~K~~~d-~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~g---l~~~~Gdt 579 (1043)
..|-.+..- ..=+---|+|-||++++||+|.+.++|+..+|++|..+.| ++++|.||+-+.+.= +|...||.
T Consensus 226 fPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~ 301 (431)
T COG2895 226 FPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDL 301 (431)
T ss_pred eceEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCC----chhhccCCceEEEEEcceeecccCcE
Confidence 444333211 1012224678899999999999999999999999998866 467899999998753 37789999
Q ss_pred EecCCCCcccccCCCCCCceEEEEEEeCCCcc
Q psy11896 580 FVTDKNNSISLESIYVADPVVSMSIKAVNNKD 611 (1043)
Q Consensus 580 l~~~~~~~~~~~~~~~~~pv~~~~iep~~~~d 611 (1043)
|+ ..+.++ ...-.+..-++.+.=+|..+..
T Consensus 302 i~-~~~~~~-~~~~~f~A~vvWm~~~pl~pGr 331 (431)
T COG2895 302 IV-AADAPP-AVADAFDADVVWMDEEPLLPGR 331 (431)
T ss_pred EE-ccCCCc-chhhhcceeEEEecCCCCCCCc
Confidence 99 343332 2333455667777777766544
No 69
>KOG0465|consensus
Probab=99.92 E-value=2.8e-23 Score=232.93 Aligned_cols=207 Identities=47% Similarity=0.596 Sum_probs=158.3
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
.+++|++..|+++|+|+......+.|.++++++||||||.+|.-++.++++..|++|+|+|+..|++.|+..+|+++.++
T Consensus 76 ~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry 155 (721)
T KOG0465|consen 76 GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY 155 (721)
T ss_pred ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc--------ceeeeeeeecccCCc------------
Q psy11896 102 DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE--------YIRNIGISAHIDSGK------------ 161 (1043)
Q Consensus 102 ~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~--------~~~ii~iSa~~g~Gi------------ 161 (1043)
++|.|.++||+|+..+++-+.++++...+...--..+++-...-. ....+......|.-+
T Consensus 156 ~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~ 235 (721)
T KOG0465|consen 156 NVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEEL 235 (721)
T ss_pred CCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHH
Confidence 999999999999999999999999988764322111111110000 011222233333222
Q ss_pred -----chHHHHHHhhccccccccccccccccccccCCCCcccee---eEEEEEe--ecCCcccHHhHHhcccCCcee
Q psy11896 162 -----TTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIR---NIGISAH--IDSGKTTLTERILFYTGRISE 228 (1043)
Q Consensus 162 -----~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir---~i~ivG~--~~~GKTTL~~~Ll~~~~~~~~ 228 (1043)
++|.+.++++...+.+++...+.++..+.....+...+. .=+++|. -|-|-..|+++.+.+.+....
T Consensus 236 ~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~E 312 (721)
T KOG0465|consen 236 AEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSE 312 (721)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhh
Confidence 567777888777777887777777776665444443332 2235665 488999999999988766544
No 70
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=220.74 Aligned_cols=280 Identities=21% Similarity=0.315 Sum_probs=214.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcc-ccccccchhhhhhcCceEeeeeEEEEec------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDN-VGAVMDSMELERQRGITIQSAATYTLWK------------ 265 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 265 (1043)
-.+|+..||+|+|||||+..|. .|..++|+. ...++|..++|.++|.|-+.+..-+-++
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~Lv--------tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld 188 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLV--------TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLD 188 (527)
T ss_pred eEEEEEeccccCCcceEEEEEE--------ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCccc
Confidence 4679999999999999999996 334455543 2357899999999999888777655543
Q ss_pred -----------CeeEEEEcCCCCCCchHHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 266 -----------DHNINIIDTPGHVDFTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 266 -----------~~~i~liDtPG~~df~~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
++.+.|+||-||+.|...+.+++ ...|..+++|.|.+|++..|++++..+....+|++++++|+|..
T Consensus 189 ~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 189 EAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC
Confidence 35789999999999999999999 78999999999999999999999999999999999999999997
Q ss_pred CC-CHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHh
Q psy11896 333 GA-DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVA 411 (1043)
Q Consensus 333 ~~-~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~ 411 (1043)
.. .+..+.+++...|+. ..-+.+++.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~-v~Rip~~vk---------------------------------------------------- 295 (527)
T COG5258 269 PDDRFQGVVEEISALLKR-VGRIPLIVK---------------------------------------------------- 295 (527)
T ss_pred cHHHHHHHHHHHHHHHHH-hcccceeee----------------------------------------------------
Confidence 43 345566666655542 111111110
Q ss_pred cCChHHHHHHhccCCCCHHHHHHHHHHhhhcCc-cEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCccccee
Q psy11896 412 EGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK-FTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKV 490 (1043)
Q Consensus 412 e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~-~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~ 490 (1043)
+.|+.. . + ..+...++ ++|+|.+|+.+|.|++ +|+-+...||.-..
T Consensus 296 ~~~d~v---------------~-a-a~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~--------------- 342 (527)
T COG5258 296 DTDDVV---------------L-A-AKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRR--------------- 342 (527)
T ss_pred ccchhH---------------H-h-hhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcccc---------------
Confidence 111110 0 0 11223444 8999999999999995 55566677775421
Q ss_pred eeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC----cEEEeceEEEeccCCeeecCeecCCC
Q psy11896 491 VLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD----KKVRVSRLVRLHSNEMEDVEEVLAGD 565 (1043)
Q Consensus 491 ~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~----~~~ki~~l~~~~g~~~~~v~~a~aGd 565 (1043)
. +..+||.+||.|++...+ |.++.+-|.||.++.||+|+..+.. ++.+|++|. .++..|++|.||+
T Consensus 343 ---~--~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIe----mh~~rvdsa~aG~ 413 (527)
T COG5258 343 ---W--DDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIE----MHHYRVDSAKAGS 413 (527)
T ss_pred ---c--CCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEE----EeeEEeccccCCc
Confidence 0 167999999999999988 9999999999999999999987642 456788876 5677899999999
Q ss_pred EEE--EccC---ccccCcEEe
Q psy11896 566 IFA--LFGV---DCASGDTFV 581 (1043)
Q Consensus 566 Iv~--i~gl---~~~~Gdtl~ 581 (1043)
|++ +.|. .+..|..|+
T Consensus 414 iig~Al~gv~~e~lerGMVl~ 434 (527)
T COG5258 414 IIGIALKGVEKEELERGMVLS 434 (527)
T ss_pred EEEEEecccCHHHHhcceEec
Confidence 986 5677 467898887
No 71
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.91 E-value=5e-24 Score=221.60 Aligned_cols=128 Identities=32% Similarity=0.407 Sum_probs=112.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.||+++||+|+|||||+++|++..... +..... ....+|+.+.|++||+|++.....+.+++.+++|+|||||.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~---g~~~~~--~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKK---GGAKFK--KYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhc---cccccc--ccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH
Confidence 589999999999999999999764321 111101 124689999999999999999999999999999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~ 332 (1043)
|..++.++++.+|++++|+|+.+|+..+++.++..+.+.++| +++|+||||+.
T Consensus 78 ~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 78 YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 999999999999999999999999999999999999999998 67899999986
No 72
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.91 E-value=2.2e-23 Score=249.60 Aligned_cols=301 Identities=24% Similarity=0.281 Sum_probs=185.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
..|+++||+|||||||+++|..........+.+..... +.+.+....+...|.+.......+.+. .++|||||||.+
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~e~ 83 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIG-ATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGHEA 83 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeec-eeeccccccccccceeccccccccccC--CEEEEECCChHH
Confidence 56999999999999999999744322222111110000 001111101111121111100111111 379999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC-CCHHHHHHHHHHHhCCCceeeeecc
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQMRQKVGHNAAFLQIPI 358 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-~~~~~~~~~i~~~l~~~~~~~~~p~ 358 (1043)
|...+.++++.+|++++|+|+.+|+..+|...+..+...++|+++++||+|+.. .....- ..+.+.+..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~-~~~~e~~~~--------- 153 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTED-APFLESIEK--------- 153 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcC-chHHHHHhh---------
Confidence 999999999999999999999999999999999999889999999999999852 110000 000000000
Q ss_pred ccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHH
Q psy11896 359 GLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438 (1043)
Q Consensus 359 ~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~ 438 (1043)
-+....+...+...++. .+|.+..+..+.+.. ++
T Consensus 154 --------------------------------~~~~v~~~f~~~l~ev~------------~~L~~~g~~~e~~~~-~~- 187 (586)
T PRK04004 154 --------------------------------QSQRVQQELEEKLYELI------------GQLSELGFSADRFDR-VK- 187 (586)
T ss_pred --------------------------------hhHHHHHHHHHHHHHHH------------HHHHhcCCChhhhhh-hh-
Confidence 00000011111111111 133333444333322 11
Q ss_pred hhhcCccEEEEEeeccCCCCHHHHHHHHHH----hCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC
Q psy11896 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLD----YLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF 514 (1043)
Q Consensus 439 ~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~----~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~ 514 (1043)
..+..+|++.+||++|.|+++|++.+.. ++|.+..+ +++.|+.+.|++++.+++
T Consensus 188 --~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~--------------------~~~~~~~~~V~ev~~~~g 245 (586)
T PRK04004 188 --DFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKI--------------------DVEGPGKGTVLEVKEERG 245 (586)
T ss_pred --ccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhcc--------------------CCCCCeEEEEEEEEEeCC
Confidence 1245678999999999999999988864 34444322 167899999999999988
Q ss_pred -ccEEEEEEecCeecCCCEEEecCCCc--EEEeceEEEec--------cCCeeecCeecCCCEEEEc--cC-ccccCcEE
Q psy11896 515 -GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRLH--------SNEMEDVEEVLAGDIFALF--GV-DCASGDTF 580 (1043)
Q Consensus 515 -G~i~~~RV~sGtl~~gd~v~~~~~~~--~~ki~~l~~~~--------g~~~~~v~~a~aGdIv~i~--gl-~~~~Gdtl 580 (1043)
|.+++++|++|+|++||.|...+.+. ..+|..|.... +.....++++.|..-+-+. |+ +...|+.+
T Consensus 246 ~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~~~ 325 (586)
T PRK04004 246 LGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGSPL 325 (586)
T ss_pred CceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCCeE
Confidence 99999999999999999998877653 35888887652 1234556666666555443 66 44556655
Q ss_pred e
Q psy11896 581 V 581 (1043)
Q Consensus 581 ~ 581 (1043)
.
T Consensus 326 ~ 326 (586)
T PRK04004 326 R 326 (586)
T ss_pred E
Confidence 4
No 73
>KOG1145|consensus
Probab=99.91 E-value=2.2e-23 Score=231.04 Aligned_cols=250 Identities=26% Similarity=0.326 Sum_probs=196.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG 276 (1043)
+.+.|.|+||+|||||||+++|-...-.- .-..|||.+.....+.. +|..++|+||||
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA---------------------~E~GGITQhIGAF~V~~p~G~~iTFLDTPG 210 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA---------------------GEAGGITQHIGAFTVTLPSGKSITFLDTPG 210 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh---------------------hhcCCccceeceEEEecCCCCEEEEecCCc
Confidence 45679999999999999999995332111 12457888776665443 679999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|.-|.....++...+|.+++||.|.+|+.+||.+.+..++..++|+++++||+|+++++++..++++.. .+. .
T Consensus 211 HaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~-~gi--~---- 283 (683)
T KOG1145|consen 211 HAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLS-QGI--V---- 283 (683)
T ss_pred HHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHH-cCc--c----
Confidence 999999999999999999999999999999999999999999999999999999999999888777644 000 0
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
+|.
T Consensus 284 -------------------------------------------------------------~E~---------------- 286 (683)
T KOG1145|consen 284 -------------------------------------------------------------VED---------------- 286 (683)
T ss_pred -------------------------------------------------------------HHH----------------
Confidence 000
Q ss_pred HHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-c
Q psy11896 437 RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-G 515 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G 515 (1043)
.+--++++..||++|.|++.|.+++.-..--- .+..+ |++|+-++|.....|++ |
T Consensus 287 -----~GGdVQvipiSAl~g~nl~~L~eaill~Ae~m-----------------dLkA~--p~g~~eg~VIES~vdkg~G 342 (683)
T KOG1145|consen 287 -----LGGDVQVIPISALTGENLDLLEEAILLLAEVM-----------------DLKAD--PKGPAEGWVIESSVDKGRG 342 (683)
T ss_pred -----cCCceeEEEeecccCCChHHHHHHHHHHHHHh-----------------hcccC--CCCCceEEEEEeeecCCcc
Confidence 12235788889999999999998886432100 11222 88999999999999988 9
Q ss_pred cEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-cc-ccCcEEe
Q psy11896 516 QLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDTFV 581 (1043)
Q Consensus 516 ~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdtl~ 581 (1043)
.++.+-|-.|||++|+.|.... .-.||..|+-..| .++++|.+|.-+.|.|. |+ ..||-+.
T Consensus 343 ~~aT~iVkrGTLkKG~vlV~G~--~w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vl 405 (683)
T KOG1145|consen 343 PVATVIVKRGTLKKGSVLVAGK--SWCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVL 405 (683)
T ss_pred ceeEEEEeccccccccEEEEec--hhhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEE
Confidence 9999999999999999987653 2346666664444 56899999999999998 65 4577654
No 74
>KOG0468|consensus
Probab=99.91 E-value=1.1e-22 Score=228.38 Aligned_cols=129 Identities=22% Similarity=0.304 Sum_probs=112.8
Q ss_pred EEEEEEEeeCCCCCCCCeEEEeccccccCCcch----HHHHHHHHHHHHHcCCccccceeceEEEeecCCccc--cCChh
Q psy11896 699 GRVIGTLEPLPPSANTKLEFIDETVGTNVPKPF----LPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNE 772 (1043)
Q Consensus 699 ~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~----~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~--~~~~~ 772 (1043)
++..|.+.| +..+++.+.|++....+++++ .++|.+||+|+..+||||++|+++|+|+|.|+.... .+.++
T Consensus 728 aRsiWaFgp---d~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgg 804 (971)
T KOG0468|consen 728 ARSIWAFGP---DYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGG 804 (971)
T ss_pred hcceeccCC---CCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCC
Confidence 556677755 335678999988877777654 556899999999999999999999999999987754 67888
Q ss_pred hHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCC
Q psy11896 773 ISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK 830 (1043)
Q Consensus 773 ~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~ 830 (1043)
+++++++||++|.|++.|.|+||||+|.+||+.|.+++..|+..|++|||++......
T Consensus 805 gQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~ 862 (971)
T KOG0468|consen 805 GQIIPTARRVAYSAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPV 862 (971)
T ss_pred CccchHHHHHHHHHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCC
Confidence 9999999999999999999999999999999999999999999999999999876544
No 75
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=8.3e-22 Score=205.75 Aligned_cols=306 Identities=25% Similarity=0.306 Sum_probs=211.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-----------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----------- 265 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 265 (1043)
+.--||+++||++||||||+.+|. ..++|.+.+|-+||+|++..+......
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Als------------------GvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y 69 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALS------------------GVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECY 69 (415)
T ss_pred CcceEeeeeeecccchhhheehhh------------------ceeeechhHHHhcCcEEEeccccCceEeCCCCCCCccc
Confidence 345789999999999999999995 246788889999999999877643210
Q ss_pred ---------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-CcchHHHHHHHHHHhcCCC-eEEEEec
Q psy11896 266 ---------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDVP-CIAFINK 328 (1043)
Q Consensus 266 ---------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-g~~~~t~~~~~~~~~~~~p-~ivviNK 328 (1043)
-+++.|+|+|||.-+...|.++....|+|++||+|.+ ..++||++++-.+.-.++. ++++=||
T Consensus 70 ~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNK 149 (415)
T COG5257 70 TTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNK 149 (415)
T ss_pred ccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecc
Confidence 1478999999999999999999999999999999995 6899999999988888885 5677799
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHH
Q psy11896 329 LDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIE 408 (1043)
Q Consensus 329 iD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e 408 (1043)
+|+.. .++++++.++.. +
T Consensus 150 IDlV~--~E~AlE~y~qIk------------------------------------------------------------~ 167 (415)
T COG5257 150 IDLVS--RERALENYEQIK------------------------------------------------------------E 167 (415)
T ss_pred cceec--HHHHHHHHHHHH------------------------------------------------------------H
Confidence 99983 333333322211 1
Q ss_pred HHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccc
Q psy11896 409 HVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDK 488 (1043)
Q Consensus 409 ~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~ 488 (1043)
|+++ +.. .-.|++.+||..+.+++.|+++|.+++|.|..
T Consensus 168 ------------FvkG---------------t~A-e~aPIIPiSA~~~~NIDal~e~i~~~IptP~r------------- 206 (415)
T COG5257 168 ------------FVKG---------------TVA-ENAPIIPISAQHKANIDALIEAIEKYIPTPER------------- 206 (415)
T ss_pred ------------Hhcc---------------ccc-CCCceeeehhhhccCHHHHHHHHHHhCCCCcc-------------
Confidence 1111 000 11377888999999999999999999999953
Q ss_pred eeeeCCCCCCCCCcEEEEEeeeecCC---------ccEEEEEEecCeecCCCEEEecCC-----CcEE----EeceEEEe
Q psy11896 489 KVVLNPSRDGKHPFIALAFKLEAGKF---------GQLTYMRCYQGKLRKGEMIYNVRT-----DKKV----RVSRLVRL 550 (1043)
Q Consensus 489 ~~~~~~~~~~~~p~~~~V~K~~~d~~---------G~i~~~RV~sGtl~~gd~v~~~~~-----~~~~----ki~~l~~~ 550 (1043)
+.+.|.+++|.+.|.... |=+.-+-+.+|.|+.||++-+.+. +.+. -.+.+..+
T Consensus 207 --------d~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl 278 (415)
T COG5257 207 --------DLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSL 278 (415)
T ss_pred --------CCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEE
Confidence 267888999988876421 446778899999999999986541 1111 12233333
Q ss_pred ccCCeeecCeecCCCEEEEc-cCc--cccCcEEecCCCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCC
Q psy11896 551 HSNEMEDVEEVLAGDIFALF-GVD--CASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDP 627 (1043)
Q Consensus 551 ~g~~~~~v~~a~aGdIv~i~-gl~--~~~Gdtl~~~~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDp 627 (1043)
++ ....+++|.+|-.+++. +|| +..+|-|... +.=.+-..|+...++.+|-. -|.++.-.+-
T Consensus 279 ~a-g~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~----V~G~pG~lPpv~~~~~ie~~----------LL~RvvG~~~ 343 (415)
T COG5257 279 QA-GGEDVEEARPGGLVGVGTKLDPTLTKADALVGQ----VVGKPGTLPPVWTSIRIEYH----------LLERVVGTKE 343 (415)
T ss_pred Ee-CCeeeeeccCCceEEEecccCcchhhhhhhccc----cccCCCCCCCceEEEEEEee----------ehhhhhCccc
Confidence 33 34578999999999874 453 3456655421 11112234444556666642 2344444444
Q ss_pred eeEEEEcCCCCcEEEEechh
Q psy11896 628 TFHFFYDPESKETLVSGMGE 647 (1043)
Q Consensus 628 sl~~~~~~etge~il~g~Ge 647 (1043)
..+++- -.++|.++...|-
T Consensus 344 e~kvep-ik~~E~Lml~VGt 362 (415)
T COG5257 344 ELKVEP-IKTNEVLMLNVGT 362 (415)
T ss_pred cccccc-ccCCCeEEEEeec
Confidence 555542 3567777665553
No 76
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.89 E-value=2.9e-21 Score=230.11 Aligned_cols=284 Identities=25% Similarity=0.344 Sum_probs=179.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE----------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL---------------- 263 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---------------- 263 (1043)
..|+++||+|||||||+++|+...-..... +|+|.+.....+.
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~---------------------ggiTq~iG~~~v~~~~~~~~~~~~~~~~~ 63 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREA---------------------GGITQHIGATEIPMDVIEGICGDLLKKFK 63 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccC---------------------CceecccCeeEeeeccccccccccccccc
Confidence 469999999999999999998543222111 1222221111111
Q ss_pred --ecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHH
Q psy11896 264 --WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVIN 341 (1043)
Q Consensus 264 --~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~ 341 (1043)
.+...+.|||||||.+|...+.++++.+|++++|+|+.+|+..+|...+..+...++|+++++||+|+.....
T Consensus 64 v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~----- 138 (590)
T TIGR00491 64 IRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWR----- 138 (590)
T ss_pred cccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhh-----
Confidence 1113489999999999999999999999999999999999999999999999889999999999999863100
Q ss_pred HHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy11896 342 QMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 421 (1043)
Q Consensus 342 ~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~ 421 (1043)
...+. |+ ++. ...-+........+....++..+++.
T Consensus 139 ---~~~~~-------~f-------------------~e~-------sak~~~~v~~~~~~~~~~lv~~l~~~-------- 174 (590)
T TIGR00491 139 ---SHEGR-------PF-------------------MES-------FSKQEIQVQQNLDTKVYNLVIKLHEE-------- 174 (590)
T ss_pred ---hccCc-------hH-------------------HHH-------HHhhhHHHHHHHHHHHHHHHHHHHhc--------
Confidence 00000 00 000 00000000111111222222222221
Q ss_pred hccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHh----CCCCCCCCccccccCcccceeeeCCCCC
Q psy11896 422 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDY----LPNPGEVTNYAIENGQEDKKVVLNPSRD 497 (1043)
Q Consensus 422 l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~----lPsp~~~~~~~~~~~~~~~~~~~~~~~~ 497 (1043)
.+..+.+.. + --.+..+|++.+||++|.|+++|+++|... ++..... +
T Consensus 175 ----G~~~e~~~~-i---~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~--------------------~ 226 (590)
T TIGR00491 175 ----GFEAERFDR-V---TDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKL--------------------E 226 (590)
T ss_pred ----CccHHhhhh-h---hhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhcc--------------------C
Confidence 222211111 1 123456799999999999999999988643 2222111 1
Q ss_pred CCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCc--EEEeceEEEecc--------CCeeecCeecC--C
Q psy11896 498 GKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRLHS--------NEMEDVEEVLA--G 564 (1043)
Q Consensus 498 ~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~--~~ki~~l~~~~g--------~~~~~v~~a~a--G 564 (1043)
+++|+.+.|...+.+++ |.++.++|++|+|++||.|...+.+. ..+|..|....+ .....++++.| |
T Consensus 227 ~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~ 306 (590)
T TIGR00491 227 EEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAG 306 (590)
T ss_pred CCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCc
Confidence 67899999999999888 99999999999999999999887653 457777775542 12334555443 3
Q ss_pred CEEEEccC-ccccCcEEe
Q psy11896 565 DIFALFGV-DCASGDTFV 581 (1043)
Q Consensus 565 dIv~i~gl-~~~~Gdtl~ 581 (1043)
--+.+.|| +...|+.+.
T Consensus 307 ~~v~~~~l~~~~aG~~~~ 324 (590)
T TIGR00491 307 VKIAAPGLDDVMAGSPIR 324 (590)
T ss_pred eeEEecCCCCCCCCCEEE
Confidence 33445566 344565553
No 77
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-21 Score=235.23 Aligned_cols=111 Identities=60% Similarity=0.905 Sum_probs=105.8
Q ss_pred cccCCChhhhhhcCCccccceEEEEecC-eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHh
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 100 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~ 100 (1043)
++++|++++|+++|+|+......+.|.+ +.++|||||||.||..++.++++.+|++|+|+|+..|+..|++.+|+++.+
T Consensus 47 ~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~ 126 (697)
T COG0480 47 AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK 126 (697)
T ss_pred CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh
Confidence 6689999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 101 YDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 101 ~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
.++|.++++||||+...+.....+++...++.
T Consensus 127 ~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 127 YGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 99999999999999988888888888887765
No 78
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.88 E-value=1e-22 Score=216.92 Aligned_cols=134 Identities=26% Similarity=0.355 Sum_probs=116.8
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeee--eec-----CCc---cccccccchhhhhhcCceEeeeeEEEEecCeeEE
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVR-----GKD---NVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~--~v~-----~~~---~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 270 (1043)
||+++||+|||||||+++|++..+.+.+.+ .+. .|. ++++++|+.+.|++||+|++.....+.|+++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 699999999999999999999999887644 221 222 2345899999999999999999999999999999
Q ss_pred EEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-------CcchHHHHHHHHHHhcC-CCeEEEEeccCCCCC
Q psy11896 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVG-------GVQSQTLTVNRQMKRYD-VPCIAFINKLDRLGA 334 (1043)
Q Consensus 271 liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-------g~~~~t~~~~~~~~~~~-~p~ivviNKiD~~~~ 334 (1043)
+||||||.+|...+..+++.+|++++|||+.+ +...++..++..+...+ .|+++|+||||+..+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 99999999999999999999999999999998 56778999988887777 467889999999743
No 79
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.88 E-value=1.6e-22 Score=207.04 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=88.9
Q ss_pred hcccccCCCcccccceeeccCCCCcccchhhHH--HHHhhhhhhhhhcCccccccccceEEEEecCccccC--CCChhHH
Q psy11896 841 CEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF--ILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMV--DSNEISF 916 (1043)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~--~~~~~~~ 916 (1043)
.+++|+|||+..|||++++++.....++..... ..++.||++|+.+||||+|||+||+|+|.++.+|+. +++++++
T Consensus 73 ~~~Iw~fGP~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~ 152 (177)
T cd01681 73 ARKIWAFGPDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQI 152 (177)
T ss_pred hCcEEEECCCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhH
Confidence 578999999999999999987765444333333 268999999999999999999999999999999975 7788999
Q ss_pred HHHHHHHHHHHHHhcCceeecceEE
Q psy11896 917 ILAAHGAMKQAYEEGVWQILEPIMS 941 (1043)
Q Consensus 917 ~~~~~~a~~~a~~~~~~~llEP~~~ 941 (1043)
++|+|+||++||++|+||||||||.
T Consensus 153 ~~a~r~a~~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 153 IPAARRACYAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHHHHHHHHHhhCCCEEEccccC
Confidence 9999999999999999999999994
No 80
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=2.7e-21 Score=199.65 Aligned_cols=130 Identities=45% Similarity=0.649 Sum_probs=110.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-----cCeeEEEEcC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-----KDHNINIIDT 274 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~liDt 274 (1043)
|||+++|++|+|||||+++|+...+.+.+.+ ....+.+..+.++.+|+|.......+.| ++..++||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt 74 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE------MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDT 74 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC------CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEEC
Confidence 7999999999999999999998766554311 1134678888999999999888777755 4577999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 335 (1043)
|||.+|...+..+++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+....
T Consensus 75 ~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 75 PGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred CCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 9999999999999999999999999999988888888887777899999999999986533
No 81
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.87 E-value=1.5e-22 Score=178.05 Aligned_cols=78 Identities=28% Similarity=0.424 Sum_probs=75.1
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCc--EEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDW--VTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.|+|+||.+++|+|+++|++|||+|++++..++. +.|+|++|++|+|||+++||+.|+|+|+|+|+|+||+++|
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999999987654 9999999999999999999999999999999999999986
No 82
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.87 E-value=9.9e-22 Score=207.75 Aligned_cols=134 Identities=28% Similarity=0.378 Sum_probs=116.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCcee--eeeec--------CCccccccccchhhhhhcCceEeeeeEEEEecCeeEE
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR--------GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~--~~~v~--------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 270 (1043)
||+++||+|+|||||+++|++..+.+.. .+.+. +.....+++|+.+.|++||+|++.....+.|++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999999888762 22211 1112356899999999999999999999999999999
Q ss_pred EEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCC
Q psy11896 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGA 334 (1043)
Q Consensus 271 liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 334 (1043)
|||||||.+|..++..+++.+|++++|+|+.+|...++..++..+...+.| +++|+||+|+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 999999999999999999999999999999999999999988888888866 5678999998743
No 83
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.87 E-value=7.7e-22 Score=189.23 Aligned_cols=119 Identities=37% Similarity=0.576 Sum_probs=111.5
Q ss_pred CeeeEEEeeecccc-eeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCc
Q psy11896 670 PKVAFKETLVQPFD-FDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCL 748 (1043)
Q Consensus 670 p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l 748 (1043)
|+|+|||||+++++ ....++++.|+.++|+++.+.++|.+ ++++.|++++.+..+|++|+++|++||++++.+|||
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~---~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl 77 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE---GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPL 77 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS---TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTT
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc---cCCceeeeccccccccHHHHHHHhhhhhheeccccc
Confidence 89999999999999 88999999999999999999999976 678999999999999999999999999999999999
Q ss_pred cccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhcc
Q psy11896 749 SGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGV 791 (1043)
Q Consensus 749 ~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~ 791 (1043)
+||||+|++|+|.++.+|.+++++.+|++|+++|+++|+++|+
T Consensus 78 ~g~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 78 CGYPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp TSSEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred CCCceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999874
No 84
>PRK00007 elongation factor G; Reviewed
Probab=99.87 E-value=7.4e-20 Score=225.60 Aligned_cols=127 Identities=57% Similarity=0.858 Sum_probs=112.9
Q ss_pred cceeeeeecccccccC---C---------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH
Q psy11896 4 KVKIIHIKQEQVRGKD---N---------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~---~---------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~ 65 (1043)
.+.|+ |-...||+|. + .++++|+.++|+++|+|++.....+.|++++++|+|||||.+|..
T Consensus 12 ni~ii-G~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 12 NIGIM-AHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 34455 7778888765 1 246889999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 66 ~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
++..+++.+|++|+|+|+..++..++..++.++...++|+|+++||+|+.+.+....++++++.++
T Consensus 91 ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~ 156 (693)
T PRK00007 91 EVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLG 156 (693)
T ss_pred HHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999988777777788877664
No 85
>KOG0467|consensus
Probab=99.87 E-value=3.9e-23 Score=236.59 Aligned_cols=670 Identities=19% Similarity=0.139 Sum_probs=357.0
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
-+.+|+.++|..+|+|..........+++.++|||+|||.||.+++.++.+-+|++++++|+.+|+..|+..+++++...
T Consensus 44 irfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~ 123 (887)
T KOG0467|consen 44 IRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE 123 (887)
T ss_pred eeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc
Confidence 45679999999999999998887777899999999999999999999999999999999999999999999999988878
Q ss_pred CCCEEEEEecCCCC----CCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcccccc
Q psy11896 102 DVPCIAFINKLDRL----GADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISE 177 (1043)
Q Consensus 102 ~~piilvlNKiDl~----~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~ 177 (1043)
+...++|+||||+. +..+.+.+..+...+. +. ..+ ||+..+. +-+
T Consensus 124 ~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~----~v----------n~~--i~~~~~~-~v~-------------- 172 (887)
T KOG0467|consen 124 GLKPILVINKIDRLITELKLSPQEAYEHLLRVIE----QV----------NGV--IGQFLGG-IVE-------------- 172 (887)
T ss_pred cCceEEEEehhhhHHHHHhcChHHHHHHHHHHHH----Hh----------hhH--HHHhhcc-hhh--------------
Confidence 88899999999953 2334444333322110 00 000 1111111 111
Q ss_pred ccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCcee--eeeecCCccccccccchhhhhhcCceE
Q psy11896 178 MHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISE--MHEVRGKDNVGAVMDSMELERQRGITI 255 (1043)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~--~~~v~~~~~~~~~~d~~~~e~~~giTi 255 (1043)
+..+.+.|+ ..--|.|.+|++++.+.......+.. .+++ ...+....+..++.+.
T Consensus 173 --------------l~~~~~~i~--d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~-------~~~kl~~k~~al~k~l 229 (887)
T KOG0467|consen 173 --------------LDDNWENIE--DEEITFGPEDGNVIFASALDGWGFGIEQFAKF-------YAKKLGLKDAALLKFL 229 (887)
T ss_pred --------------ccchhhhhh--hcceeecCCCCcEEEEEecccccccHHHHHHH-------HHHhcChhhhhhhhhh
Confidence 111112233 34457777888777666533332221 0000 0011112333444444
Q ss_pred eeeeEEEEe------cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEecc
Q psy11896 256 QSAATYTLW------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKL 329 (1043)
Q Consensus 256 ~~~~~~~~~------~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKi 329 (1043)
...+....+ ++..-...|.++|.+|.+.+.-+-+.+|.. -+.+..+++.+++..+...-.+ .++.|+|
T Consensus 230 wgd~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~-d~~~~~ki~k~l~i~~l~r~~~-----~ll~~im 303 (887)
T KOG0467|consen 230 WGDRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSR-DKEKLEKIAKSLNIKLLPRDLR-----NLLDAIM 303 (887)
T ss_pred ccceeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccc-hHHHHHHHhhhcccccchHHHH-----HHHHHHH
Confidence 433332211 111112288999999999988887777776 3344445556666555433222 2333444
Q ss_pred CCC----CCCHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHH
Q psy11896 330 DRL----GADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQE 405 (1043)
Q Consensus 330 D~~----~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~ 405 (1043)
++- .+.+-.++.++ |......+...+.-
T Consensus 304 ~~wLPls~avll~a~~~l------------------------------------------------p~pl~~~~~r~~rl 335 (887)
T KOG0467|consen 304 STWLPLSDAVLLTVVYKL------------------------------------------------PDPIRSQAERGLRL 335 (887)
T ss_pred HhhcccccchHHHHHHhc------------------------------------------------CCHHHHHHHhhcee
Confidence 432 11111111110 11110000000000
Q ss_pred -----------HHHHHhcC-ChHHHHHHhccC-CCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCC-
Q psy11896 406 -----------LIEHVAEG-DEILGEMFLEEK-SISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP- 471 (1043)
Q Consensus 406 -----------l~e~l~e~-dd~l~~~~l~~~-~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lP- 471 (1043)
+.+.+-+. ++..+-.|...+ ..+...+... ....|.++|.|.-..|.-+ .-+-|
T Consensus 336 ~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~-----~l~~~ari~sgTlr~g~~v-------~v~~pd 403 (887)
T KOG0467|consen 336 LSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQS-----RLLAFARIFSGTLRVGQVV-------YVLGPD 403 (887)
T ss_pred ccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchh-----hheeeeeeccCceeeccEe-------eecCCC
Confidence 00000000 111000011110 0011111110 0113445555544443211 11112
Q ss_pred -CCCC-CCcccccc---CcccceeeeCCCCCCCCCcEEEEE-----ee--ee--cCCccEEEEEEecCeecCCCEEEecC
Q psy11896 472 -NPGE-VTNYAIEN---GQEDKKVVLNPSRDGKHPFIALAF-----KL--EA--GKFGQLTYMRCYQGKLRKGEMIYNVR 537 (1043)
Q Consensus 472 -sp~~-~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~V~-----K~--~~--d~~G~i~~~RV~sGtl~~gd~v~~~~ 537 (1043)
.+.+ ...-++.. -.+.+-+ ..+..+.+.+++..- |. .. .+.|++++ +.|+||...+-.|...+
T Consensus 404 ~~~~e~i~~~~ie~lyl~mgqelv--~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~-~~f~~tp~vrvaiep~~ 480 (887)
T KOG0467|consen 404 PLSPEHITECTVESLYLFMGQELV--PLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLV-VNFQITPIVRVAIEPDD 480 (887)
T ss_pred CCCcceeeeeeehhhHHhhcccce--eeeccCCCcEEEecccceEeccceecccCCCcceee-eeeeeeeEEEEEeecCC
Confidence 1111 00001110 0001111 111124455554431 11 11 14488888 89999998888887654
Q ss_pred CCc-EEEeceEEEecc-CCeeecCeecCCCEEE-EccC-ccc------cC---cEEecCCCCcccc-cCCCCCCce--EE
Q psy11896 538 TDK-KVRVSRLVRLHS-NEMEDVEEVLAGDIFA-LFGV-DCA------SG---DTFVTDKNNSISL-ESIYVADPV--VS 601 (1043)
Q Consensus 538 ~~~-~~ki~~l~~~~g-~~~~~v~~a~aGdIv~-i~gl-~~~------~G---dtl~~~~~~~~~~-~~~~~~~pv--~~ 601 (1043)
... ..-++++-.+.. +....+-.-.-|.-+. .+|. .+. +| --+. ......++ +.+ ...|. ..
T Consensus 481 p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~efa~i~i~-vSeP~vpfrET~-~e~s~l~~~ 558 (887)
T KOG0467|consen 481 PDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKEFAKIEIS-VSEPLVPFRETI-IEDSDLLAN 558 (887)
T ss_pred hHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhhhhceEEE-ecCCccchhhhc-cccchhhhh
Confidence 221 000111110100 0000010111222222 1221 110 11 0111 00101111 111 11112 34
Q ss_pred EEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-CccEEecCCeeeEEEeeec
Q psy11896 602 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGKPKVAFKETLVQ 680 (1043)
Q Consensus 602 ~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~v~i~~~~p~V~yrEti~~ 680 (1043)
.+|++. +..++..++....+-+|.-...++ -++++.....+++|-+- |+...+ .....++ +.+..+||+..
T Consensus 559 ~~I~~~---~~~~~~~~~ki~~~~~pl~~~~v~-~l~~~~~ti~~i~~~~~---~~~~i~e~~k~~~~-e~ls~~~s~~~ 630 (887)
T KOG0467|consen 559 LSIGQE---TKCLPRGQLKIKLRVVPLSGAVVD-LLDKNSSLISNILRGES---RQVPIDESQKGSFE-ENLSLLISLER 630 (887)
T ss_pred hhcCcc---cccccccceeEEeeecccccceec-cccccchhccchhcccc---cccccccccccccc-ccccHHHHHHH
Confidence 555553 778899999999999998877775 47888888888887776 443333 4555566 88888888866
Q ss_pred ccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEec-------ccccc-CCcchHHHHHHHHHHHHHcCCccccc
Q psy11896 681 PFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDE-------TVGTN-VPKPFLPAIIKGFKQMCEKGCLSGSR 752 (1043)
Q Consensus 681 ~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~-------~~~~~-l~~~~~~~i~~g~~~~~~~G~l~g~p 752 (1043)
....+ |++. ..+-+-.-+|.++|..- +.++-|... ..+.+ +++ +-+++..||+-++..||||.+|
T Consensus 631 ~~~~e---k~~e-~~~~~~~~~~Afgp~r~--g~nilf~~~~~~~~s~~~~t~~~~~-l~~~ivsgfql~~~sGPlc~Ep 703 (887)
T KOG0467|consen 631 LYEFE---KPRE-KLGSFKDQIIAFGPRRV--GPNILFNKDSKLYRSVRRGTPFVAR-LSESIVSGFQLATSSGPLCNEP 703 (887)
T ss_pred Hhhcc---ccHH-HHHHHHhhhhccccccc--CCceeeccccchhhhhhhcchHHHH-HHHHHhhhHhhhhccCcccccC
Confidence 54421 1110 01111123446777542 223333211 11111 223 5678999999999999999999
Q ss_pred eeceEEEeecCCccccCC---hhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCC
Q psy11896 753 VAGVRMVLKDGDNHMVDS---NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 829 (1043)
Q Consensus 753 v~~v~~~l~d~~~~~~~~---~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~ 829 (1043)
+.++.|.+..+.-..+++ -.++.+.|++.+|++|++...++|+.|+|..+|++..+++|++|..|++|+|.+.+++.
T Consensus 704 ~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem 783 (887)
T KOG0467|consen 704 MQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEM 783 (887)
T ss_pred cccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhhh
Confidence 999999998744333222 23789999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q psy11896 830 KD 831 (1043)
Q Consensus 830 ~~ 831 (1043)
+.
T Consensus 784 ~E 785 (887)
T KOG0467|consen 784 KE 785 (887)
T ss_pred hC
Confidence 53
No 86
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=5.3e-21 Score=200.29 Aligned_cols=143 Identities=45% Similarity=0.634 Sum_probs=120.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.+|||+++|++|+|||||+++|+...+.+.....+. .+.+|+.+.|..+|+|+......+.+++..+++||||||
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~-----~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~ 75 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVE-----ERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH 75 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCccc-----ccccccchhHHhcccccccceeEEEECCEEEEEEECCCc
Confidence 379999999999999999999997655544322111 245788888999999999999999999999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHH
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 345 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~ 345 (1043)
.+|...+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+........++++.+
T Consensus 76 ~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 143 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFD 143 (194)
T ss_pred HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999888888888888788999999999999976555444444443
No 87
>KOG0461|consensus
Probab=99.86 E-value=2.2e-21 Score=203.32 Aligned_cols=246 Identities=26% Similarity=0.269 Sum_probs=194.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---------CeeEE
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---------DHNIN 270 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---------~~~i~ 270 (1043)
.|++++||+|+|||||+.+|..... +...|..+...+||+|.+.....+... .-++.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~S--------------TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~t 73 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGS--------------TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFT 73 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhcc--------------chhhccCCcccccceeEeecceeeecccccccCccccceeE
Confidence 6899999999999999999963211 234678888999999999887766532 34689
Q ss_pred EEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC-HHHHHHHHHHHhCC
Q psy11896 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKVGH 349 (1043)
Q Consensus 271 liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-~~~~~~~i~~~l~~ 349 (1043)
|+|+|||......+..+....|..++|||+..|.+.||.+.+-.........++|+||+|....+ ....++++.+++.
T Consensus 74 lvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~- 152 (522)
T KOG0461|consen 74 LVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVR- 152 (522)
T ss_pred EEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999999988888888999999999986322 1122222222111
Q ss_pred CceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCH
Q psy11896 350 NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISE 429 (1043)
Q Consensus 350 ~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~ 429 (1043)
T Consensus 153 -------------------------------------------------------------------------------- 152 (522)
T KOG0461|consen 153 -------------------------------------------------------------------------------- 152 (522)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhcCccEEEEEeeccCC----CCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEE
Q psy11896 430 DDIKKAIRRSTLTRKFTPVLVGTALKN----KGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIAL 505 (1043)
Q Consensus 430 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~----~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 505 (1043)
+.|. .+-.+.-.|++.+||..| +++.+|.+++...+-.|. +++.+||.++
T Consensus 153 ----KtLe-~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~---------------------Rd~~gpflm~ 206 (522)
T KOG0461|consen 153 ----KTLE-STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK---------------------RDEEGPFLMA 206 (522)
T ss_pred ----HHHH-hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC---------------------cCCCCCeEEE
Confidence 1111 112233458899999999 899999999987776664 2388999999
Q ss_pred EEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc
Q psy11896 506 AFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 570 (1043)
Q Consensus 506 V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~ 570 (1043)
|...+..++ |++..+.|.+|.++.|+.+..+--+...||+.+. .-+.+|.+|.+||..+++
T Consensus 207 vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslq----mf~~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 207 VDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQ----MFKQRVTSAAAGDRAGFC 268 (522)
T ss_pred eeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHH----HHhhhhhhhhcccceeee
Confidence 999999988 9999999999999999999988777777777765 234568899999998864
No 88
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.86 E-value=5.7e-21 Score=202.90 Aligned_cols=131 Identities=37% Similarity=0.494 Sum_probs=114.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-----CeeEEEEcC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-----DHNINIIDT 274 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~liDt 274 (1043)
|||+++||+|+|||||+++|+...+.+...+....+ .++++|..+.|+++|+|+......+.|. .+.+++|||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~--~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDt 78 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWK--PLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDT 78 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCC--ceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEEC
Confidence 789999999999999999999888776543332222 3567899999999999999988888765 378999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|||.+|...+..+++.+|++++|+|+.++...++..+++.+...++|+++|+||+|+.
T Consensus 79 pG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 9999999999999999999999999999998899888888888889999999999986
No 89
>KOG0459|consensus
Probab=99.85 E-value=5e-21 Score=205.49 Aligned_cols=292 Identities=23% Similarity=0.269 Sum_probs=215.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
++....|+.++||+++||||+-+.+++..+.+.++. .-..++..++++|...+|+..|-|+......|+.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 345568999999999999999999999888776532 2345667788999999999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-------chHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP 336 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~ 336 (1043)
...+++++|+|||-.|..+++.+...+|.+++|+.|..|- ..||+.+..+++..++. .|+++||||.+..++
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 9999999999999999999999999999999999997542 46999999999998885 577899999886554
Q ss_pred H-HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCCh
Q psy11896 337 Y-RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDE 415 (1043)
Q Consensus 337 ~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd 415 (1043)
. +.++++.+++...... .-|.
T Consensus 235 s~eRy~E~~~k~~~fLr~----------------------~g~n------------------------------------ 256 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRK----------------------LGFN------------------------------------ 256 (501)
T ss_pred chhhHHHHHHHHHHHHHH----------------------hccc------------------------------------
Confidence 2 2333333322210000 0000
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHh--CCCCCCCCccccccCcccceeeeC
Q psy11896 416 ILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDY--LPNPGEVTNYAIENGQEDKKVVLN 493 (1043)
Q Consensus 416 ~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~--lPsp~~~~~~~~~~~~~~~~~~~~ 493 (1043)
..-.-.++|+ |.++|.++.+..+.++-+ .|++.+.- ..+-+
T Consensus 257 -----------------------~~~d~~f~p~---sg~tG~~~k~~~~s~cpwy~gp~fl~~l-----------d~l~~ 299 (501)
T KOG0459|consen 257 -----------------------PKPDKHFVPV---SGLTGANVKDRTDSVCPWYKGPIFLEYL-----------DELPH 299 (501)
T ss_pred -----------------------CCCCceeeec---ccccccchhhcccccCCcccCCccceeh-----------hccCc
Confidence 0001123444 777777776665422211 12222110 00112
Q ss_pred CCCCCCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEE--Ecc
Q psy11896 494 PSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFG 571 (1043)
Q Consensus 494 ~~~~~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~--i~g 571 (1043)
.+++.++|+++.|..-+.|- |++.+++|-||++++||.+.+.+.+....|.+|| .+-.+++++.+|+.+- |.|
T Consensus 300 ~~R~~~GP~~~pI~~Kykdm-GTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~----~ddvE~~~~~pGenvk~rlkg 374 (501)
T KOG0459|consen 300 LERILNGPIRCPVANKYKDM-GTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIY----SDDVETDRVAPGENVKLRLKG 374 (501)
T ss_pred ccccCCCCEEeehhhhcccc-ceEEEEEecccceecCCeEEEccCCcceEEEEEe----cccceeeeccCCcceEEEecc
Confidence 23458999999876555553 8999999999999999999999988889999999 6788899999999986 578
Q ss_pred C---ccccCcEEecCCCCc
Q psy11896 572 V---DCASGDTFVTDKNNS 587 (1043)
Q Consensus 572 l---~~~~Gdtl~~~~~~~ 587 (1043)
+ |+.+|-.|+ +++++
T Consensus 375 ieeedi~~GfiL~-~~~n~ 392 (501)
T KOG0459|consen 375 IEEEDISPGFILC-SPNNP 392 (501)
T ss_pred cchhhccCceEEe-cCCCc
Confidence 7 678898888 55443
No 90
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.5e-21 Score=212.92 Aligned_cols=200 Identities=24% Similarity=0.266 Sum_probs=166.0
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC---
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG--- 86 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~--- 86 (1043)
.++..||.|+.++|++|++++||++|+|++..+..|+.+.+.|+|+|+|||.+|...+...+.+||++|||||++.+
T Consensus 45 ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE 124 (428)
T COG5256 45 EAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFE 124 (428)
T ss_pred HHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ----CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCc
Q psy11896 87 ----VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 87 ----~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
+..|+.++.-.++..|+. +|+++||||+++++.++. +++...+..+++..++... ..+.+||||.+|+|+
T Consensus 125 ~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf-~ei~~~v~~l~k~~G~~~~----~v~FIPiSg~~G~Nl 199 (428)
T COG5256 125 AGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF-EEIVSEVSKLLKMVGYNPK----DVPFIPISGFKGDNL 199 (428)
T ss_pred cccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH-HHHHHHHHHHHHHcCCCcc----CCeEEecccccCCcc
Confidence 889999998888888987 889999999998776544 5666666555555454332 246699999999999
Q ss_pred chHHHHHHhhccc-ccccccccccccc-ccccCCCCccceeeEE-----EEEeecCCccc
Q psy11896 162 TTLTERILFYTGR-ISEMHETSRWISN-ESLSEHKPIEYIRNIG-----ISAHIDSGKTT 214 (1043)
Q Consensus 162 ~~L~~~l~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~ir~i~-----ivG~~~~GKTT 214 (1043)
.+.-+...||.++ +++.++....+.. ...+++.+.+.+..|. .+|.+.+|.=.
T Consensus 200 ~~~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~ 259 (428)
T COG5256 200 TKKSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIK 259 (428)
T ss_pred cccCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEEecCCceEEEEEEeeeeec
Confidence 9888999999999 8888887776666 3457788888777643 45555555433
No 91
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.85 E-value=3.1e-19 Score=220.54 Aligned_cols=126 Identities=59% Similarity=0.853 Sum_probs=111.4
Q ss_pred ceeeeeecccccccCC------------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH
Q psy11896 5 VKIIHIKQEQVRGKDN------------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 66 (1043)
+.|+ |-..+||+|.. .++++|+.+.|+++|+|++.....++|++++++||||||+.+|...
T Consensus 13 i~ii-G~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~ 91 (689)
T TIGR00484 13 IGIS-AHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVE 91 (689)
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHH
Confidence 4445 88888887651 2378899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
+..+++.+|++++|+|+.+++..++..++.++...++|+++++||+|+.+++..+.++++++.++
T Consensus 92 ~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~ 156 (689)
T TIGR00484 92 VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLG 156 (689)
T ss_pred HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999989999999999999988777777777777653
No 92
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.85 E-value=9.2e-21 Score=179.15 Aligned_cols=114 Identities=21% Similarity=0.274 Sum_probs=103.7
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||+++++. ..+ ++.++++||++++++++|+++ +.++.|.+++.++.+|++|+++|++|+++++.+||| ||
T Consensus 1 VaYRETI~~~~~~-~~~-~~~~~~~~~a~v~l~veP~~~--g~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~ 75 (115)
T cd01684 1 VIYKERPLGTGEG-VEH-IEVPPNPFWATVGLRVEPLPR--GSGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GW 75 (115)
T ss_pred CceEEEeCCcEEE-EEE-EccCCCcEEEEEEEEEEECCC--CCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CC
Confidence 6899999998773 344 455577889999999999864 467999999999999999999999999999999999 99
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhc
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 790 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~ 790 (1043)
||+|++|+|.|+++|.++|++.+|+.|+++|+++|+.+|
T Consensus 76 pv~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~~a~~~a 114 (115)
T cd01684 76 EVTDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKA 114 (115)
T ss_pred CEeeEEEEEEEeeecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999876
No 93
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.85 E-value=8.2e-21 Score=199.97 Aligned_cols=116 Identities=27% Similarity=0.343 Sum_probs=100.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-------------- 265 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 265 (1043)
+||+++||.|+|||||+++|. ...+|+.+.|.++|+|+......+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~------------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS------------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYR 62 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh------------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccc
Confidence 489999999999999999994 123677788899999998887777764
Q ss_pred -------------C------eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-CcchHHHHHHHHHHhcCC-CeEE
Q psy11896 266 -------------D------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDV-PCIA 324 (1043)
Q Consensus 266 -------------~------~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-g~~~~t~~~~~~~~~~~~-p~iv 324 (1043)
+ ++++|||||||.+|...+..+++.+|++++|+|+.+ +...++...+..+...++ |+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iii 142 (203)
T cd01888 63 SKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIII 142 (203)
T ss_pred cccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEE
Confidence 3 789999999999999999999999999999999998 467888888888777776 5888
Q ss_pred EEeccCCCC
Q psy11896 325 FINKLDRLG 333 (1043)
Q Consensus 325 viNKiD~~~ 333 (1043)
|+||+|+..
T Consensus 143 vvNK~Dl~~ 151 (203)
T cd01888 143 VQNKIDLVK 151 (203)
T ss_pred EEEchhccC
Confidence 999999864
No 94
>PRK12739 elongation factor G; Reviewed
Probab=99.85 E-value=8.8e-19 Score=216.29 Aligned_cols=126 Identities=53% Similarity=0.828 Sum_probs=111.7
Q ss_pred ceeeeeecccccccCC------------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH
Q psy11896 5 VKIIHIKQEQVRGKDN------------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 66 (1043)
+.|+ |-...||+|.. -++++|+.++|+++|+|++.....++|++++++|||||||.+|..+
T Consensus 11 i~ii-Gh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e 89 (691)
T PRK12739 11 IGIM-AHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIE 89 (691)
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHH
Confidence 3444 77777877651 2368899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
+..+++.+|++|+|+|+.+++..++..++..+...++|+|+++||+|+...+....++++++.++
T Consensus 90 ~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~ 154 (691)
T PRK12739 90 VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLG 154 (691)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987777777777777654
No 95
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=4.5e-20 Score=192.93 Aligned_cols=119 Identities=27% Similarity=0.388 Sum_probs=103.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--------------C
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--------------D 266 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------------~ 266 (1043)
||+++||+|+|||||+++|+...+ ...+|....|+++|+|+......+.+. +
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~--------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS--------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEEN 67 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc--------------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccC
Confidence 799999999999999999985321 234677788999999999988888776 7
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+.+++||||||.+|...+..+.+.+|++++|+|+.+|...++...+..+...+.|+++|+||+|+..
T Consensus 68 ~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 68 LQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 8999999999999988888888999999999999999988888777777777899999999999863
No 96
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.83 E-value=5.6e-21 Score=170.88 Aligned_cols=84 Identities=40% Similarity=0.754 Sum_probs=80.5
Q ss_pred eecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 935 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 935 llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||||.|+|.||.+++|+|+++|++|||+|++++..++.+.|+|++|++++|||+++||+.|+|+|+++++|+||+++|
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEVP 80 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceECC
Confidence 68999999999999999999999999999999999877789999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy11896 1015 PEVQ 1018 (1043)
Q Consensus 1015 ~~~~ 1018 (1043)
++++
T Consensus 81 ~~~~ 84 (85)
T smart00838 81 KSIA 84 (85)
T ss_pred hhhc
Confidence 7654
No 97
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.83 E-value=1e-20 Score=170.59 Aligned_cols=88 Identities=47% Similarity=0.778 Sum_probs=83.5
Q ss_pred eeecceEEEEEEecCcchhhhhhHhhccCeEEeccccC-CCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEeccccc
Q psy11896 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK-DDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSP 1012 (1043)
Q Consensus 934 ~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~ 1012 (1043)
+||||||.++|.+|++++|+|+++|++|||.|++++.. ++.+.|+|.+|+++++||.++||+.|+|+|.|++.|+||++
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred CCHHHHHHH
Q psy11896 1013 ALPEVQDRL 1021 (1043)
Q Consensus 1013 ~~~~~~~~~ 1021 (1043)
+++++++++
T Consensus 81 ~~~~~~~~~ 89 (89)
T PF00679_consen 81 VPGDILDRL 89 (89)
T ss_dssp ESHHHHHHH
T ss_pred CCCChhhcC
Confidence 999999875
No 98
>PRK13351 elongation factor G; Reviewed
Probab=99.82 E-value=8.5e-18 Score=208.41 Aligned_cols=130 Identities=48% Similarity=0.754 Sum_probs=116.9
Q ss_pred ccceeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH
Q psy11896 3 HKVKIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 64 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 64 (1043)
+++.|+ |..++||||..- ++.+|+.+.|+++|+|+......+.|++++++||||||+.+|.
T Consensus 9 rni~ii-G~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 9 RNIGIL-AHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred cEEEEE-CCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 456666 999999999821 3577899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhc
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRW 133 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~ 133 (1043)
..+..+++.+|++++|+|++.+...++..++..+...++|+++++||+|+...+..+.++++++.++..
T Consensus 88 ~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 156 (687)
T PRK13351 88 GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKR 156 (687)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999899999998888899999999999999888888888988877643
No 99
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.82 E-value=1.6e-19 Score=191.87 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=111.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcc-ccccccchhhhhhcCceEeeeeE-------------------
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDN-VGAVMDSMELERQRGITIQSAAT------------------- 260 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~------------------- 260 (1043)
+|+++|+.++|||||+++|... .. +++.. ....+|...+|.++|+|......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~--~~------~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~ 72 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQG--EL------DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLS 72 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--Cc------CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccc
Confidence 4899999999999999999742 11 11111 12357888899999988643321
Q ss_pred -----EEEecCeeEEEEcCCCCCCchHHHHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 261 -----YTLWKDHNINIIDTPGHVDFTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 261 -----~~~~~~~~i~liDtPG~~df~~e~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.+..+++.++|+|||||.+|..++.+++. .+|++++|+|+.+|...++..++.++...++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 73 ESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP 152 (224)
T ss_pred cccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 12345789999999999999999999985 79999999999999999999999999999999999999999864
Q ss_pred C-CHHHHHHHHHHHhC
Q psy11896 334 A-DPYRVINQMRQKVG 348 (1043)
Q Consensus 334 ~-~~~~~~~~i~~~l~ 348 (1043)
. ...+.++++.+.+.
T Consensus 153 ~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 153 ANILQETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3 34566677776665
No 100
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.82 E-value=3.1e-18 Score=212.80 Aligned_cols=273 Identities=23% Similarity=0.251 Sum_probs=183.7
Q ss_pred CcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC------------------eeEEEE
Q psy11896 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------------HNINII 272 (1043)
Q Consensus 211 GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------------~~i~li 272 (1043)
+||||+++|...+- +.+-.+|||.+.....+.+.. ..++||
T Consensus 473 ~KTtLLD~iR~t~v---------------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fi 531 (1049)
T PRK14845 473 HNTTLLDKIRKTRV---------------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFI 531 (1049)
T ss_pred ccccHHHHHhCCCc---------------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEE
Confidence 39999999963321 133467888888877766542 138999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC-CCCH---HHHHHHHHHHhC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL-GADP---YRVINQMRQKVG 348 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~-~~~~---~~~~~~i~~~l~ 348 (1043)
|||||.+|.....++.+.+|++++|+|+.+|+..||..++..+...++|+++|+||+|+. ++.. ......+
T Consensus 532 DTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~----- 606 (1049)
T PRK14845 532 DTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNF----- 606 (1049)
T ss_pred ECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhh-----
Confidence 999999999888888899999999999999999999999999999999999999999985 2221 0011110
Q ss_pred CCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCC
Q psy11896 349 HNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSIS 428 (1043)
Q Consensus 349 ~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~ 428 (1043)
....+...+++-+.+.+ +.. .|.+..+.
T Consensus 607 -----------------------------------------------~~q~~~~~~el~~~l~~----v~~-~L~~~G~~ 634 (1049)
T PRK14845 607 -----------------------------------------------NEQDQHALTELEIKLYE----LIG-KLYELGFD 634 (1049)
T ss_pred -----------------------------------------------hhhHHHHHHHHHHHHHH----Hhh-HHHhcCcc
Confidence 00111111111111100 000 01111122
Q ss_pred HHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEe
Q psy11896 429 EDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 508 (1043)
Q Consensus 429 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K 508 (1043)
.+... .+. ..+..+|++.+||++|.|++.|+++|....+.-.+.. +.. ++++|+.+.|..
T Consensus 635 ~e~~~-~~~---d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~--------------L~~--~~~~~~~g~VlE 694 (1049)
T PRK14845 635 ADRFD-RVQ---DFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEER--------------LKL--NVEGYAKGTILE 694 (1049)
T ss_pred hhhhh-hhh---hcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhh--------------hcc--CCCCceEEEEEE
Confidence 11110 111 1356789999999999999999998875433211100 011 167899999999
Q ss_pred eeecCC-ccEEEEEEecCeecCCCEEEecCCCc--EEEeceEEEec--------cCCeeecCeecCCCEEEEc--cC-cc
Q psy11896 509 LEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRLH--------SNEMEDVEEVLAGDIFALF--GV-DC 574 (1043)
Q Consensus 509 ~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~--~~ki~~l~~~~--------g~~~~~v~~a~aGdIv~i~--gl-~~ 574 (1043)
++.+++ |.++.+.|++|+|++||.|...+.+. ..+|..|.... +.....++++.|+.-+-|. |+ ++
T Consensus 695 v~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~ 774 (1049)
T PRK14845 695 VKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV 774 (1049)
T ss_pred EEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcccc
Confidence 999988 99999999999999999999987543 46777776432 2235577888887777664 77 56
Q ss_pred ccCcEEe
Q psy11896 575 ASGDTFV 581 (1043)
Q Consensus 575 ~~Gdtl~ 581 (1043)
..|+.+.
T Consensus 775 ~aG~~~~ 781 (1049)
T PRK14845 775 LAGSPIR 781 (1049)
T ss_pred CCCCeEE
Confidence 6787765
No 101
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.81 E-value=1.7e-19 Score=171.53 Aligned_cols=115 Identities=46% Similarity=0.857 Sum_probs=109.5
Q ss_pred EEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccce
Q psy11896 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRV 753 (1043)
Q Consensus 674 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv 753 (1043)
|||||+++++.++.+++++||.+||++++++++|+++ +.++.|.+++.++.+|++++++|++|+++++.+||+.|+||
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~--g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv 78 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPR--GSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPV 78 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCC--CCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 9999999988779999999999999999999999864 46889999999999999999999999999999999999999
Q ss_pred eceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhc
Q psy11896 754 AGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 790 (1043)
Q Consensus 754 ~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~ 790 (1043)
+|++|+|.++.+|..++++.+|+.|+++|+++|+.+|
T Consensus 79 ~~v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a 115 (116)
T cd01434 79 VDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKA 115 (116)
T ss_pred ccEEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999876
No 102
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.81 E-value=4.8e-20 Score=161.87 Aligned_cols=78 Identities=55% Similarity=0.971 Sum_probs=76.0
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.|+|.||.+++|+|+++|++|||+|.+++..++.+.|+|++|++|+|||+++||+.|+|+|+++++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999999877889999999999999999999999999999999999999986
No 103
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.80 E-value=7.7e-20 Score=160.53 Aligned_cols=78 Identities=24% Similarity=0.438 Sum_probs=75.7
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.|+|+||.+++|+|+++|++|||+|.+++..++.+.|+|++|++|+|||+++||+.|+|+|+|+++|+||+++.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999999877899999999999999999999999999999999999999873
No 104
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=2.4e-18 Score=178.90 Aligned_cols=143 Identities=47% Similarity=0.712 Sum_probs=116.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
||+++|.+|+|||||+++|+...........+. ...++....+..+++|+......+.+.+..+++|||||+.+|
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE-----ETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee-----cccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH
Confidence 589999999999999999986655433211111 134666778889999999888888999999999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC-CCHHHHHHHHHHHhC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQMRQKVG 348 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-~~~~~~~~~i~~~l~ 348 (1043)
...+..+++.+|++++|+|+.++...+....+..+...++|+++|+||+|+.. .......+.+.+.++
T Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (189)
T cd00881 76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLG 144 (189)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHc
Confidence 99999999999999999999999988888888888888999999999999985 344444555555443
No 105
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.79 E-value=1.3e-19 Score=159.44 Aligned_cols=78 Identities=45% Similarity=0.880 Sum_probs=76.1
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.|+|+||.+++|+|+++|++|||.|++++..++.+.|+|.+|++|+|||.++||+.|+|+|+++++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999999877799999999999999999999999999999999999999986
No 106
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.78 E-value=1e-18 Score=167.30 Aligned_cols=117 Identities=19% Similarity=0.169 Sum_probs=103.1
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCC--CCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSA--NTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLS 749 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~--~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~ 749 (1043)
|+|||||+++++.++++++++||.+||+++.++++|++++. +..+.|.+.+ ++.+|++|+++|++|+++++.+|||+
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~ 79 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGPLL 79 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCcc
Confidence 68999999998878999999999999999999999987543 2256776555 78899999999999999999999999
Q ss_pred ccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhc
Q psy11896 750 GSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 790 (1043)
Q Consensus 750 g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~ 790 (1043)
|+||+|++|+|.++.+|..+++...+ .|++.|+++|+.++
T Consensus 80 G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~~al~~a 119 (120)
T cd01693 80 GFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQKALKSA 119 (120)
T ss_pred CCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHHHHHHhc
Confidence 99999999999999999887775544 77999999999875
No 107
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.78 E-value=1.1e-18 Score=166.55 Aligned_cols=115 Identities=25% Similarity=0.390 Sum_probs=109.0
Q ss_pred EEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccce
Q psy11896 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRV 753 (1043)
Q Consensus 674 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv 753 (1043)
|||||.++++..+.+++++||.++|+++.++++|+++ +.++.|.+++.++.+|++|+++|++||++++.+|||+|+||
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~--~~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv 78 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLER--GSGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPL 78 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCC--CCCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCce
Confidence 9999999988888999999999999999999999875 46789999999999999999999999999999999999999
Q ss_pred eceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhc
Q psy11896 754 AGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEG 790 (1043)
Q Consensus 754 ~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~ 790 (1043)
+|++|+|.++.+|..++++++|+.|++.|+++|+.++
T Consensus 79 ~~v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~a 115 (116)
T cd01680 79 TDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKA 115 (116)
T ss_pred eeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999876
No 108
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.78 E-value=3.7e-19 Score=157.23 Aligned_cols=78 Identities=35% Similarity=0.534 Sum_probs=74.6
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCCC--cEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.++|+||++++|+|+++|++|||.|++++..++ .+.|+|++|++|+|||.++||++|+|+|+|++.|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 8999999999999999999999999999999998643 59999999999999999999999999999999999999986
No 109
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.77 E-value=5.1e-19 Score=153.11 Aligned_cols=75 Identities=39% Similarity=0.702 Sum_probs=70.6
Q ss_pred CCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecC
Q psy11896 595 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669 (1043)
Q Consensus 595 ~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~ 669 (1043)
+|+|+++++|+|.++.|.++|.+||++|.+|||+|++.+|++|||++|+||||+||+|+++||+++||++++++.
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999873
No 110
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.77 E-value=1.8e-16 Score=193.59 Aligned_cols=158 Identities=28% Similarity=0.285 Sum_probs=128.6
Q ss_pred eeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
+.+.|..++||||...+...........+|+|.+.....+.+++.+++|||||||.+|...+.++++.+|++|||+|+++
T Consensus 293 V~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd 372 (787)
T PRK05306 293 VTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD 372 (787)
T ss_pred EEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC
Confidence 34449999999999766655555666678999999988899999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHH
Q psy11896 86 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLT 165 (1043)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~ 165 (1043)
++..++.+.+..+...++|+|+++||+|++..+..+...++.+. +. +...+ ....+++++||++|.|+++|+
T Consensus 373 Gv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~-~~------~~e~~-g~~vp~vpvSAktG~GI~eLl 444 (787)
T PRK05306 373 GVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY-GL------VPEEW-GGDTIFVPVSAKTGEGIDELL 444 (787)
T ss_pred CCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh-cc------cHHHh-CCCceEEEEeCCCCCCchHHH
Confidence 99999999999988899999999999999876655554444331 10 01111 122578999999999999999
Q ss_pred HHHHhh
Q psy11896 166 ERILFY 171 (1043)
Q Consensus 166 ~~l~~~ 171 (1043)
+.+.+.
T Consensus 445 e~I~~~ 450 (787)
T PRK05306 445 EAILLQ 450 (787)
T ss_pred Hhhhhh
Confidence 998864
No 111
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.76 E-value=7.9e-19 Score=154.87 Aligned_cols=78 Identities=51% Similarity=0.852 Sum_probs=76.1
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCC-CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPAL 1014 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~ 1014 (1043)
||||.++|+||++++|+|+++|++|||.|.+++..+ +.+.|+|++|++|+|||.++||+.|+|+|++++.|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999999887 899999999999999999999999999999999999999885
No 112
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.76 E-value=1.8e-16 Score=189.71 Aligned_cols=158 Identities=28% Similarity=0.280 Sum_probs=126.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
++.++ |...+||||...+...........+|+|.+.....+.+++. +++|||||||.+|...+.++++.+|++|+|+|
T Consensus 89 ~V~I~-Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVd 167 (587)
T TIGR00487 89 VVTIM-GHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVA 167 (587)
T ss_pred EEEEE-CCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEE
Confidence 34455 99999999998777777777777789999998888888655 89999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcc
Q psy11896 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKT 162 (1043)
Q Consensus 83 a~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~ 162 (1043)
++++...++.+.+..+...++|+++++||+|+++.+.++..+.+.+. + +.........+++++||++|.|++
T Consensus 168 a~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~-g-------~~~~~~~~~~~~v~iSAktGeGI~ 239 (587)
T TIGR00487 168 ADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEY-G-------LVPEDWGGDTIFVPVSALTGDGID 239 (587)
T ss_pred CCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHh-h-------hhHHhcCCCceEEEEECCCCCChH
Confidence 99999999999988888889999999999999866655554444321 1 100000112467999999999999
Q ss_pred hHHHHHHh
Q psy11896 163 TLTERILF 170 (1043)
Q Consensus 163 ~L~~~l~~ 170 (1043)
+|++.+..
T Consensus 240 eLl~~I~~ 247 (587)
T TIGR00487 240 ELLDMILL 247 (587)
T ss_pred HHHHhhhh
Confidence 99998863
No 113
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.76 E-value=1.7e-18 Score=152.28 Aligned_cols=77 Identities=27% Similarity=0.524 Sum_probs=74.4
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCC-CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
|||+.++|.||++++|+|+++|++|||.|.+++..+ +.+.|+|.+|++|+|||.++||+.|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999876 68999999999999999999999999999999999999975
No 114
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.75 E-value=2.4e-16 Score=190.73 Aligned_cols=158 Identities=27% Similarity=0.313 Sum_probs=125.0
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec----CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~----~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+.++ |..++||||...+...........+|+|.+.....+.+. +..++|||||||.+|...+..+++.+|++|+|
T Consensus 247 V~Iv-GhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILV 325 (742)
T CHL00189 247 VTIL-GHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILI 325 (742)
T ss_pred EEEE-CCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEE
Confidence 4445 999999999977766666666777899988877666553 47899999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 81 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+|+.++...++.+.+..+...++|+|+++||+|++..+.++..+++... . . +...+ ....+++++||++|.|
T Consensus 326 VDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~-l-----l~e~~-g~~vpvv~VSAktG~G 397 (742)
T CHL00189 326 IAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-N-L-----IPEKW-GGDTPMIPISASQGTN 397 (742)
T ss_pred EECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-c-c-----chHhh-CCCceEEEEECCCCCC
Confidence 9999999999999999888889999999999999865554444444321 0 0 00001 1235789999999999
Q ss_pred cchHHHHHHhh
Q psy11896 161 KTTLTERILFY 171 (1043)
Q Consensus 161 i~~L~~~l~~~ 171 (1043)
+++|++.+...
T Consensus 398 IdeLle~I~~l 408 (742)
T CHL00189 398 IDKLLETILLL 408 (742)
T ss_pred HHHHHHhhhhh
Confidence 99999988755
No 115
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.75 E-value=1.8e-16 Score=198.97 Aligned_cols=137 Identities=18% Similarity=0.259 Sum_probs=120.2
Q ss_pred EEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccc--cCChhhHHH
Q psy11896 699 GRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNEISFI 776 (1043)
Q Consensus 699 ~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~--~~~~~~~~~ 776 (1043)
++-.|.+.| +..+++.|++++.|..+.++++++|++||+||+++|||||+||+||+|+|.|+++|. +++.+++|+
T Consensus 631 ~~~i~~~gp---~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~ 707 (843)
T PLN00116 631 AKKIWCFGP---ETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQII 707 (843)
T ss_pred hcCeeeecC---CCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHH
Confidence 344566666 234569999999998888888899999999999999999999999999999999998 667788999
Q ss_pred HHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCC--ceeeeh
Q psy11896 777 LAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYA 838 (1043)
Q Consensus 777 ~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~--~~~~~~ 838 (1043)
+|+++||++|+++|.++||||+|.+||.+|++++|.|+++|++|||.+..++..++ +..|.|
T Consensus 708 ~A~~~a~~~Al~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A 771 (843)
T PLN00116 708 PTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKA 771 (843)
T ss_pred HHHHHHHHHHHHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999998776443 244544
No 116
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.75 E-value=3.5e-18 Score=177.91 Aligned_cols=161 Identities=30% Similarity=0.348 Sum_probs=130.3
Q ss_pred eeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEE--ecCeeEEEEeCCCCcchHHH
Q psy11896 7 IIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 7 i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~--~~~~~i~liDTPG~~~~~~~ 66 (1043)
.+.|..+.||++..- ++.+|..+.|+++|+|++.....+. ++++.++|+|||||.+|...
T Consensus 7 ~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~ 86 (188)
T PF00009_consen 7 AIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKE 86 (188)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHH
T ss_pred EEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccceeec
Confidence 334889999988711 1246788999999999999999999 89999999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
+..+++.+|++|+|+|+.+++..++.+++..+...++|+++|+||+|+...+..+..+++...+ ++...... ..
T Consensus 87 ~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l---~~~~~~~~---~~ 160 (188)
T PF00009_consen 87 MIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKL---LKEYGENG---EE 160 (188)
T ss_dssp HHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHH---HHHTTSTT---TS
T ss_pred ccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHh---ccccccCc---cc
Confidence 9999999999999999999999999999999999999999999999998444444444444333 11111110 03
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..+++++||++|.|+++|++.+..++|
T Consensus 161 ~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 161 IVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 578999999999999999999998876
No 117
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.74 E-value=2.4e-16 Score=195.22 Aligned_cols=127 Identities=39% Similarity=0.518 Sum_probs=106.1
Q ss_pred ccceeeeeecccccccCCcc----------------ccCCChhhhhhcCCccccceEE----EEecCeeEEEEeCCCCcc
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG----------------AVMDSMELERQRGITIQSAATY----TLWKDHNINIIDTPGHVD 62 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~----------------~~~d~~~~e~~~G~T~~~~~~~----~~~~~~~i~liDTPG~~~ 62 (1043)
.++.++ |..++||||..-+ +++|+.++|+++|+|++..... +++++++++|||||||.+
T Consensus 20 rnI~iv-Gh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 20 RNIGIV-AHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred cEEEEE-EeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 456677 9999999998333 3479999999999999976544 567789999999999999
Q ss_pred hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhh
Q psy11896 63 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKT 130 (1043)
Q Consensus 63 ~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~ 130 (1043)
|...+..+++.+|++|+|+|+..++..++..+++.+...++|.++++||+|+...+.....+.+++.+
T Consensus 99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~ 166 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERF 166 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHH
Confidence 99999999999999999999999999999999998888889999999999987654444444444443
No 118
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.74 E-value=8.9e-18 Score=194.83 Aligned_cols=176 Identities=23% Similarity=0.341 Sum_probs=135.6
Q ss_pred cCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHH
Q psy11896 18 KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 97 (1043)
Q Consensus 18 s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~ 97 (1043)
|+.++|++|..++|+++|+|++.....+++++.+++|||||||.+|...+..++..+|++++|+|+..++..++.+++..
T Consensus 48 ~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~ 127 (406)
T TIGR02034 48 EIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYI 127 (406)
T ss_pred ceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-c
Q psy11896 98 MKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-I 175 (1043)
Q Consensus 98 l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~ 175 (1043)
+...++| +++++||+|+...+. ..++.+.+.+..++...+ +...+++|+||++|.|++++.+.+.||.++ +
T Consensus 128 ~~~~~~~~iivviNK~D~~~~~~-~~~~~i~~~~~~~~~~~~------~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL 200 (406)
T TIGR02034 128 ASLLGIRHVVLAVNKMDLVDYDE-EVFENIKKDYLAFAEQLG------FRDVTFIPLSALKGDNVVSRSESMPWYSGPTL 200 (406)
T ss_pred HHHcCCCcEEEEEEecccccchH-HHHHHHHHHHHHHHHHcC------CCCccEEEeecccCCCCcccccCCCccchhHH
Confidence 8887775 888999999976443 334444444433332211 123468999999999999988888888765 5
Q ss_pred cccccccccccc-ccccCCCCcccee
Q psy11896 176 SEMHETSRWISN-ESLSEHKPIEYIR 200 (1043)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~~~~ir 200 (1043)
.+.++....+.. ...+.+++.+++.
T Consensus 201 ~~~L~~~~~~~~~~~~p~r~~i~~v~ 226 (406)
T TIGR02034 201 LEILETVEVERDAQDLPLRFPVQYVN 226 (406)
T ss_pred HHHHHhcCCCCCcCCCCcccceEEEe
Confidence 455544333322 1224555555443
No 119
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=3.5e-17 Score=166.00 Aligned_cols=115 Identities=29% Similarity=0.394 Sum_probs=95.8
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-CeeEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDtPG~~d 279 (1043)
+|+++|++|+|||||+++|+... .+..+.+..+++|+......+.+. +..+++|||||+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~ 63 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE------------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK 63 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc------------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH
Confidence 68999999999999999996321 122334566788888877777776 88999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCC-CeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~-p~ivviNKiD~~~ 333 (1043)
|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+..
T Consensus 64 ~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 64 FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 98888888999999999999999888888887776666666 9999999999864
No 120
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.73 E-value=4.8e-16 Score=193.04 Aligned_cols=109 Identities=45% Similarity=0.541 Sum_probs=96.2
Q ss_pred eeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEe----cCeeEEEEeCCCCcchHHHHH
Q psy11896 9 HIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLW----KDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 9 ~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~----~~~~i~liDTPG~~~~~~~~~ 68 (1043)
.|-.+.||||.. .++++|+.++|+++|+|++.....+.| .+++++|+|||||.+|...+.
T Consensus 26 igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~ 105 (731)
T PRK07560 26 IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVT 105 (731)
T ss_pred EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHH
Confidence 377888887761 246799999999999999998776665 477899999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 117 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~ 117 (1043)
.+++.+|++|+|+|+..++..++..+++.+...++|.|+++||+|+...
T Consensus 106 ~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 106 RAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIK 154 (731)
T ss_pred HHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcc
Confidence 9999999999999999999999999999988888999999999998644
No 121
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.73 E-value=1.1e-17 Score=196.10 Aligned_cols=182 Identities=24% Similarity=0.289 Sum_probs=135.0
Q ss_pred ccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC--CCchhHH
Q psy11896 15 VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG--GVQSQTL 92 (1043)
Q Consensus 15 gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~--~~~~~~~ 92 (1043)
|+.++.++|++|+.++|+++|+|++.....+++++++++|||||||.+|...+...++.+|++++|+|+++ ++..++.
T Consensus 49 g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~ 128 (425)
T PRK12317 49 GKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR 128 (425)
T ss_pred CCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchH
Confidence 55556668899999999999999999999999999999999999999999988888999999999999998 8888888
Q ss_pred HHHHHHHhcCC-CEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhh
Q psy11896 93 TVNRQMKRYDV-PCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 93 ~~~~~l~~~~~-piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+++..+...++ |+++++||+|+.+.+.+. ++.+.+.+..++...++. ....+++++||++|.|++++.+.+.||
T Consensus 129 ~~~~~~~~~~~~~iivviNK~Dl~~~~~~~-~~~~~~~i~~~l~~~g~~----~~~~~ii~iSA~~g~gi~~~~~~~~wy 203 (425)
T PRK12317 129 EHVFLARTLGINQLIVAINKMDAVNYDEKR-YEEVKEEVSKLLKMVGYK----PDDIPFIPVSAFEGDNVVKKSENMPWY 203 (425)
T ss_pred HHHHHHHHcCCCeEEEEEEccccccccHHH-HHHHHHHHHHHHHhhCCC----cCcceEEEeecccCCCccccccCCCcc
Confidence 88888777776 589999999997643322 222222222222221211 113478999999999999999889999
Q ss_pred ccc-cccccccccccccc-cccCCCCccceee
Q psy11896 172 TGR-ISEMHETSRWISNE-SLSEHKPIEYIRN 201 (1043)
Q Consensus 172 l~~-~~~~~~~~~~~~~~-~~~~~~~~~~ir~ 201 (1043)
.++ +.+.++....+... ..+.+++.+++.+
T Consensus 204 ~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~ 235 (425)
T PRK12317 204 NGPTLLEALDNLKPPEKPTDKPLRIPIQDVYS 235 (425)
T ss_pred cHHHHHHHHhcCCCCccccCCCcEEEEEEEEe
Confidence 876 55565544333222 2244555555544
No 122
>PRK12740 elongation factor G; Reviewed
Probab=99.73 E-value=2.9e-15 Score=185.71 Aligned_cols=109 Identities=63% Similarity=0.969 Sum_probs=100.0
Q ss_pred ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcC
Q psy11896 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD 102 (1043)
Q Consensus 23 ~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~ 102 (1043)
+++|+.+.|+++|+|++.....+.++++.++||||||+.+|...+..+++.+|++++|+|++.+...++..++..+...+
T Consensus 33 ~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~ 112 (668)
T PRK12740 33 TTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYG 112 (668)
T ss_pred ccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999999999999999999998888888888888889
Q ss_pred CCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 103 VPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 103 ~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
+|+++|+||+|+...+..+.++++++.++
T Consensus 113 ~p~iiv~NK~D~~~~~~~~~~~~l~~~l~ 141 (668)
T PRK12740 113 VPRIIFVNKMDRAGADFFRVLAQLQEKLG 141 (668)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHC
Confidence 99999999999987776667777776554
No 123
>KOG0462|consensus
Probab=99.73 E-value=1.4e-17 Score=185.58 Aligned_cols=142 Identities=38% Similarity=0.477 Sum_probs=129.6
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecC---eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKD---HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 96 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~ 96 (1043)
....++|+...||++|+|+...+..+.|.+ +.+++||||||.||..++.+.+..||++|+||||..|++.|+...+.
T Consensus 92 ~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~ 171 (650)
T KOG0462|consen 92 GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFY 171 (650)
T ss_pred chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHH
Confidence 566788999999999999999999888888 89999999999999999999999999999999999999999999888
Q ss_pred HHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 97 QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 97 ~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.+.+.+..+|.|+||+|++.+++++...++.+.|. +...+++.+||++|.|++++++.+....|+
T Consensus 172 lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~-------------~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 172 LAFEAGLAIIPVLNKIDLPSADPERVENQLFELFD-------------IPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred HHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhc-------------CCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 88899999999999999999999988888877653 334578999999999999999999987764
No 124
>KOG0463|consensus
Probab=99.73 E-value=3.7e-17 Score=173.27 Aligned_cols=281 Identities=16% Similarity=0.203 Sum_probs=203.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccc-ccccchhhhhhcCceEeeee-------------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVG-AVMDSMELERQRGITIQSAA------------------- 259 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~-~~~d~~~~e~~~giTi~~~~------------------- 259 (1043)
.+|+++|++++|||||+..|.. ++.++|...+ +-++....|.+.|-|-....
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--------cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 4799999999999999998863 2344443322 23455556666665442221
Q ss_pred EEEEec------CeeEEEEcCCCCCCchHHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCC
Q psy11896 260 TYTLWK------DHNINIIDTPGHVDFTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 331 (1043)
Q Consensus 260 ~~~~~~------~~~i~liDtPG~~df~~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~ 331 (1043)
.+++|- .+.++|||.+||+.|.+.+..++ ...|...++|.+..|+-..|.+++.++....+|+++|++|||.
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeecc
Confidence 123331 25799999999999999988888 6889999999999999999999999999999999999999999
Q ss_pred CCCCH-HHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHH
Q psy11896 332 LGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHV 410 (1043)
Q Consensus 332 ~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l 410 (1043)
..++. ++.+..+.+.+...-+ ..+|+--.+ ..|++. ...+
T Consensus 286 CPANiLqEtmKll~rllkS~gc-rK~PvlVrs----~DDVv~--------------~A~N-------------------- 326 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGC-RKLPVLVRS----MDDVVH--------------AAVN-------------------- 326 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCc-ccCcEEEec----ccceEE--------------eecc--------------------
Confidence 98774 5666666666654211 122221000 000000 0000
Q ss_pred hcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCccccee
Q psy11896 411 AEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKV 490 (1043)
Q Consensus 411 ~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~ 490 (1043)
+...+.+|+|-+|..+|.++ +||.++.+.+|.-....
T Consensus 327 -----------------------------F~Ser~CPIFQvSNVtG~NL-~LLkmFLNlls~R~~~~------------- 363 (641)
T KOG0463|consen 327 -----------------------------FPSERVCPIFQVSNVTGTNL-PLLKMFLNLLSLRRQLN------------- 363 (641)
T ss_pred -----------------------------CccccccceEEeccccCCCh-HHHHHHHhhcCcccccc-------------
Confidence 11345789999999999999 78889988887543211
Q ss_pred eeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC----cEEEeceEEEeccCCeeecCeecCCC
Q psy11896 491 VLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD----KKVRVSRLVRLHSNEMEDVEEVLAGD 565 (1043)
Q Consensus 491 ~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~----~~~ki~~l~~~~g~~~~~v~~a~aGd 565 (1043)
.+.|.-.+|..+|+.++ |+++-+...+|+++-+|.+...++. -...|++|. +++-+|..+.+|+
T Consensus 364 -------E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~VrcGQ 432 (641)
T KOG0463|consen 364 -------ENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRCGQ 432 (641)
T ss_pred -------cCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEeccc
Confidence 46677888999999999 9999999999999999999877643 234566665 7888999999999
Q ss_pred EE--EEccC---ccccCcEEe
Q psy11896 566 IF--ALFGV---DCASGDTFV 581 (1043)
Q Consensus 566 Iv--~i~gl---~~~~Gdtl~ 581 (1043)
-. ++.++ +++.|.++.
T Consensus 433 tASFALKKIkr~~vRKGMVmV 453 (641)
T KOG0463|consen 433 TASFALKKIKRKDVRKGMVMV 453 (641)
T ss_pred hhhhHhhhcchhhhhcceEEe
Confidence 76 45666 778999988
No 125
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.73 E-value=1.7e-17 Score=193.70 Aligned_cols=184 Identities=24% Similarity=0.270 Sum_probs=137.7
Q ss_pred ccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-----
Q psy11896 13 EQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV----- 87 (1043)
Q Consensus 13 ~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~----- 87 (1043)
..|++++.++|++|+.++|+++|+|++.....++++++.++|+|||||.+|...+..++..+|++++|+|+..|.
T Consensus 48 ~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~ 127 (446)
T PTZ00141 48 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGI 127 (446)
T ss_pred hhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceeccc
Confidence 345666677789999999999999999999999999999999999999999999999999999999999999886
Q ss_pred --chhHHHHHHHHHhcCCC-EEEEEecCCCCC--CCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcc
Q psy11896 88 --QSQTLTVNRQMKRYDVP-CIAFINKLDRLG--ADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKT 162 (1043)
Q Consensus 88 --~~~~~~~~~~l~~~~~p-iilvlNKiDl~~--~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~ 162 (1043)
..|+.+++..+...++| +|+++||+|+.. ++. ..++.+.+.+...+...++. ....+++|+||.+|+|+.
T Consensus 128 ~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~-~~~~~i~~~i~~~l~~~g~~----~~~~~~ipiSa~~g~ni~ 202 (446)
T PTZ00141 128 SKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ-ERYDEIKKEVSAYLKKVGYN----PEKVPFIPISGWQGDNMI 202 (446)
T ss_pred CCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH-HHHHHHHHHHHHHHHhcCCC----cccceEEEeecccCCCcc
Confidence 47999999999999998 679999999543 222 22344444444333332322 123678999999999998
Q ss_pred hHHHHHHhhccc-cccccccccccccc-cccCCCCccceee
Q psy11896 163 TLTERILFYTGR-ISEMHETSRWISNE-SLSEHKPIEYIRN 201 (1043)
Q Consensus 163 ~L~~~l~~~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~ir~ 201 (1043)
+..+.+.||.++ +.+.+.....+... ..+.+++.+++.+
T Consensus 203 ~~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~ 243 (446)
T PTZ00141 203 EKSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYK 243 (446)
T ss_pred cCCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEe
Confidence 877778888776 55665543332221 2234455554443
No 126
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.73 E-value=7.2e-18 Score=148.41 Aligned_cols=77 Identities=27% Similarity=0.552 Sum_probs=73.8
Q ss_pred cceEEEEEEecCcchhhhhhHhhccCeEEeccccCC-CcEEEEEEechhhh-cCchHHHHhhcCCceEEEeEecccccC
Q psy11896 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-DWVTIYAEIPLNDM-FGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 937 EP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~-~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
|||+.++|.||++++|+|+++|++|||+|++++..+ +...|+|.+|++++ +||.++||+.|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 899999999999999999999999999999999866 58999999999999 599999999999999999999999975
No 127
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.3e-15 Score=170.69 Aligned_cols=192 Identities=27% Similarity=0.275 Sum_probs=139.5
Q ss_pred eeeeeecccccccCCccccCCChhhh-hhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSMELE-RQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~~e-~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
+.+.|--..||||..- .+-.+.-.+ ..-|+|.+.....+.++ ...++|+|||||..|..+..+..+.+|+++||+
T Consensus 8 VtimGHVDHGKTtLLD-~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVV 86 (509)
T COG0532 8 VTIMGHVDHGKTTLLD-KIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVV 86 (509)
T ss_pred EEEeCcccCCccchhh-hHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEE
Confidence 3443555566666532 222222233 34478999999999885 358999999999999999999999999999999
Q ss_pred eCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCc
Q psy11896 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 82 Da~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
|+.+|+.+|+.+.+..++..+.|+++++||+|++..++.+...++++. ++..........++|+||++|+|+
T Consensus 87 a~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~--------gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 87 AADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY--------GLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred EccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc--------CCCHhhcCCceEEEEeeccCCCCH
Confidence 999999999999999999999999999999999988888887777653 232222122367899999999999
Q ss_pred chHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHh
Q psy11896 162 TTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 162 ~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll 220 (1043)
++|++.+.-...-+ +.. ..+..+-+-.++=...+-|.-+++..|+
T Consensus 159 ~eLL~~ill~aev~----elk----------a~~~~~a~gtviE~~~dkG~G~vatviv 203 (509)
T COG0532 159 DELLELILLLAEVL----ELK----------ANPEGPARGTVIEVKLDKGLGPVATVIV 203 (509)
T ss_pred HHHHHHHHHHHHHH----hhh----------cCCCCcceEEEEEEEeccCCCceEEEEE
Confidence 99999886433221 111 1111223445566666677777776665
No 128
>KOG0458|consensus
Probab=99.72 E-value=2.6e-17 Score=185.97 Aligned_cols=197 Identities=23% Similarity=0.294 Sum_probs=154.9
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC---
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG--- 86 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~--- 86 (1043)
.....||.|+.++|++|++.+||++|+|.+.....|+.+.+.++|+|+|||.+|...++.....||++++|+|++.+
T Consensus 215 es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE 294 (603)
T KOG0458|consen 215 ESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFE 294 (603)
T ss_pred HHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhh
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999832
Q ss_pred ----CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhcc-ccccccCCCCccceeeeeeeecccCC
Q psy11896 87 ----VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWI-SNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 87 ----~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+..|+.++...++..|+. +|+++||+|+++++.++. +++...++.++ +..++... + ...+|||+.+|+|
T Consensus 295 ~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF-~eIk~~l~~fL~~~~gf~es-~---v~FIPiSGl~GeN 369 (603)
T KOG0458|consen 295 SGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRF-EEIKNKLSSFLKESCGFKES-S---VKFIPISGLSGEN 369 (603)
T ss_pred hccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHH-HHHHHHHHHHHHHhcCcccC-C---cceEecccccCCc
Confidence 567889999999999986 889999999999887655 77777787777 55554432 1 2458999999999
Q ss_pred cchH---HHHHHhhccc-cccccccccccccccc-cCCCCcccee-----eEEEEEeecCC
Q psy11896 161 KTTL---TERILFYTGR-ISEMHETSRWISNESL-SEHKPIEYIR-----NIGISAHIDSG 211 (1043)
Q Consensus 161 i~~L---~~~l~~~l~~-~~~~~~~~~~~~~~~~-~~~~~~~~ir-----~i~ivG~~~~G 211 (1043)
+... -+...||.++ +++.++....+.+... +.+.....+. -+++-|...+|
T Consensus 370 L~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG 430 (603)
T KOG0458|consen 370 LIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPLPSSGVSISGKIESG 430 (603)
T ss_pred ccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeecCCCeeEEEEEEecc
Confidence 8655 2557899998 7777776555544422 3333322221 14555665555
No 129
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.71 E-value=3.3e-17 Score=191.09 Aligned_cols=185 Identities=20% Similarity=0.211 Sum_probs=138.1
Q ss_pred cccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC------
Q psy11896 14 QVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV------ 87 (1043)
Q Consensus 14 ~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~------ 87 (1043)
.++.++.++|++|..++|+++|+|++.....++++++.++|+|||||.+|...+..++..+|++|+|+|++++.
T Consensus 49 ~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~ 128 (447)
T PLN00043 49 MNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGIS 128 (447)
T ss_pred hcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccC
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999763
Q ss_pred -chhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchH
Q psy11896 88 -QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 164 (1043)
Q Consensus 88 -~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L 164 (1043)
..++.+++..+...++| +|+++||+|+...+. +...+++.+.+..++...++. ....+++|+||++|+|+.+.
T Consensus 129 ~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~----~~~~~~ipiSa~~G~ni~~~ 204 (447)
T PLN00043 129 KDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYN----PDKIPFVPISGFEGDNMIER 204 (447)
T ss_pred CCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCC----cccceEEEEecccccccccc
Confidence 26888888888889996 688999999863221 222334444444444433332 12246799999999999887
Q ss_pred HHHHHhhccc-ccccccccccccc-ccccCCCCccceeeE
Q psy11896 165 TERILFYTGR-ISEMHETSRWISN-ESLSEHKPIEYIRNI 202 (1043)
Q Consensus 165 ~~~l~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~ir~i 202 (1043)
.+.+.||.++ +.+.++.-..+.. ...+.+++.+++.++
T Consensus 205 ~~~~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~ 244 (447)
T PLN00043 205 STNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKI 244 (447)
T ss_pred ccCCcccchHHHHHHHhhcCCCccccCCCcEEEEEEEEEe
Confidence 7778888776 5566554333222 223556666666553
No 130
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=6.4e-17 Score=180.39 Aligned_cols=113 Identities=23% Similarity=0.290 Sum_probs=99.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
+.|+|+|.+|+|||||.|+|+...-.+ .++.+|+|.+..+...+|.++.+.+|||+|..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI--------------------V~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~ 63 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI--------------------VSDTPGVTRDRIYGDAEWLGREFILIDTGGLDD 63 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE--------------------eecCCCCccCCccceeEEcCceEEEEECCCCCc
Confidence 569999999999999999998543332 334889999999999999999999999999875
Q ss_pred ch---------HHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FT---------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~---------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.. .+++.|+..||++|||||+.+|++++...+.+.++..++|+++|+||+|..
T Consensus 64 ~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 64 GDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 33 235778899999999999999999999999999998889999999999975
No 131
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=4.3e-17 Score=191.82 Aligned_cols=158 Identities=26% Similarity=0.326 Sum_probs=125.8
Q ss_pred cCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHH
Q psy11896 18 KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 97 (1043)
Q Consensus 18 s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~ 97 (1043)
++.++|++|+.++|+++|+|++.....+++++.+++|||||||.+|...+...+..+|++++|+|+..++..++.+++..
T Consensus 75 ~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l 154 (474)
T PRK05124 75 KLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFI 154 (474)
T ss_pred ccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred HHhcCC-CEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-c
Q psy11896 98 MKRYDV-PCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-I 175 (1043)
Q Consensus 98 l~~~~~-piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~ 175 (1043)
+...++ |+|+++||+|+.+.+. ..++.+.+.+..++...++ ....+++|+||++|.|++++.+.+.||.++ +
T Consensus 155 ~~~lg~~~iIvvvNKiD~~~~~~-~~~~~i~~~l~~~~~~~~~-----~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tL 228 (474)
T PRK05124 155 ATLLGIKHLVVAVNKMDLVDYSE-EVFERIREDYLTFAEQLPG-----NLDIRFVPLSALEGDNVVSQSESMPWYSGPTL 228 (474)
T ss_pred HHHhCCCceEEEEEeeccccchh-HHHHHHHHHHHHHHHhcCC-----CCCceEEEEEeecCCCcccccccccccchhhH
Confidence 777775 5889999999975443 3334444444332222111 124678999999999999988888888776 5
Q ss_pred cccccc
Q psy11896 176 SEMHET 181 (1043)
Q Consensus 176 ~~~~~~ 181 (1043)
.+.++.
T Consensus 229 l~~L~~ 234 (474)
T PRK05124 229 LEVLET 234 (474)
T ss_pred HHHHhh
Confidence 554443
No 132
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.5e-17 Score=176.63 Aligned_cols=179 Identities=25% Similarity=0.335 Sum_probs=149.1
Q ss_pred cccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHH
Q psy11896 14 QVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 93 (1043)
Q Consensus 14 ~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~ 93 (1043)
..+..+.++.++|-...|++.|+|+|..+.+|.....+|.+.|||||+.|.+.+......||++|++||++.|+.+|+..
T Consensus 50 t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR 129 (431)
T COG2895 50 TQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRR 129 (431)
T ss_pred CCCCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 94 VNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 94 ~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.....-.|++ +++++|||||.+.+.+ ..+++...+..+..+.+ +....++|+||..|.|+-.--+.+.||.
T Consensus 130 Hs~I~sLLGIrhvvvAVNKmDLvdy~e~-~F~~I~~dy~~fa~~L~------~~~~~~IPiSAl~GDNV~~~s~~mpWY~ 202 (431)
T COG2895 130 HSFIASLLGIRHVVVAVNKMDLVDYSEE-VFEAIVADYLAFAAQLG------LKDVRFIPISALLGDNVVSKSENMPWYK 202 (431)
T ss_pred HHHHHHHhCCcEEEEEEeeecccccCHH-HHHHHHHHHHHHHHHcC------CCcceEEechhccCCcccccccCCCccc
Confidence 98888888887 7899999999987754 44667766655555433 3334679999999999999999999999
Q ss_pred cc-cccccccccccccccc-cCCCCccce
Q psy11896 173 GR-ISEMHETSRWISNESL-SEHKPIEYI 199 (1043)
Q Consensus 173 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~i 199 (1043)
++ +++.++.......... +.+.|.+.+
T Consensus 203 GptLLe~LE~v~i~~~~~~~~~RfPVQ~V 231 (431)
T COG2895 203 GPTLLEILETVEIADDRSAKAFRFPVQYV 231 (431)
T ss_pred CccHHHHHhhccccccccccceeeceEEe
Confidence 99 8888888765544433 355565543
No 133
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.71 E-value=4.1e-17 Score=172.53 Aligned_cols=156 Identities=27% Similarity=0.330 Sum_probs=120.7
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 99 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~ 99 (1043)
..++++|..+.|+++|+|++.....+++++.+++||||||+.+|...+..+++.+|++|+|+|++.++..++..++..+.
T Consensus 47 ~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~ 126 (208)
T cd04166 47 DLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILS 126 (208)
T ss_pred ceeeeccCChhhhcCCcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999988999999999999999999988888877777777
Q ss_pred hcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-ccc
Q psy11896 100 RYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-ISE 177 (1043)
Q Consensus 100 ~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~~~ 177 (1043)
..++| +|+|+||+|+...+.. ..+.+...+..++.. ......+++++||++|.|+++....+.||.++ +.+
T Consensus 127 ~~~~~~iIvviNK~D~~~~~~~-~~~~i~~~~~~~~~~------~~~~~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~ 199 (208)
T cd04166 127 LLGIRHVVVAVNKMDLVDYSEE-VFEEIVADYLAFAAK------LGIEDITFIPISALDGDNVVSRSENMPWYSGPTLLE 199 (208)
T ss_pred HcCCCcEEEEEEchhcccCCHH-HHHHHHHHHHHHHHH------cCCCCceEEEEeCCCCCCCccCCCCCCCCCCCcHHH
Confidence 77765 7789999999754332 112222222211111 11223468999999999999988888999887 555
Q ss_pred ccccc
Q psy11896 178 MHETS 182 (1043)
Q Consensus 178 ~~~~~ 182 (1043)
.++..
T Consensus 200 ~~~~~ 204 (208)
T cd04166 200 HLETV 204 (208)
T ss_pred HHhcC
Confidence 54443
No 134
>KOG1144|consensus
Probab=99.71 E-value=1.4e-16 Score=181.52 Aligned_cols=257 Identities=20% Similarity=0.237 Sum_probs=155.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee-eEEEEecCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~~~~i~liDtPG~~ 278 (1043)
+-+||+||+|+|||-|++.|...+-.-...|.+..... ..|.|.+..+.-|-... .....++--.+.+||||||.
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIg----At~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIG----ATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeecc----ccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 46899999999999999999654333333222222111 11222221111111000 00111223458899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC-CC---HHHHHHHHHHHhCCCceee
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-AD---PYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-~~---~~~~~~~i~~~l~~~~~~~ 354 (1043)
.|.+...++...||.+|+|||..+|+.+||.+.+.+++..+.|+|+++||+||+- +. ...+.+.+.+.-+
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k------ 625 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK------ 625 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH------
Confidence 9999999999999999999999999999999999999999999999999999972 10 0111111111000
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
.+-.+|..+ -..++-.+++..-. .+.|++.
T Consensus 626 -----------------------------------~v~~EF~~R----~~~ii~efaEQgLN-~~LyykN---------- 655 (1064)
T KOG1144|consen 626 -----------------------------------DVQNEFKER----LNNIIVEFAEQGLN-AELYYKN---------- 655 (1064)
T ss_pred -----------------------------------HHHHHHHHH----HHHHHHHHHHcccc-hhheeec----------
Confidence 000111111 11222222221100 1123222
Q ss_pred HHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF 514 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~ 514 (1043)
.-.+.++.++.+||.+|.||-.||-.|+.+.-..... ++. ....+-+.|.-+-..++
T Consensus 656 -----k~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~---kl~---------------y~~ev~cTVlEVKvieG 712 (1064)
T KOG1144|consen 656 -----KEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE---KLA---------------YVDEVQCTVLEVKVIEG 712 (1064)
T ss_pred -----ccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH---HHh---------------hhhheeeEEEEEEeecC
Confidence 1256788999999999999999999988765322110 000 12234445555555555
Q ss_pred -ccEEEEEEecCeecCCCEEEecCCC
Q psy11896 515 -GQLTYMRCYQGKLRKGEMIYNVRTD 539 (1043)
Q Consensus 515 -G~i~~~RV~sGtl~~gd~v~~~~~~ 539 (1043)
|.-.-+-+..|.|+.||.|.+++.+
T Consensus 713 ~GtTIDViLvNG~L~eGD~IvvcG~~ 738 (1064)
T KOG1144|consen 713 HGTTIDVILVNGELHEGDQIVVCGLQ 738 (1064)
T ss_pred CCceEEEEEEcceeccCCEEEEcCCC
Confidence 7766666789999999999987643
No 135
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.70 E-value=7.5e-17 Score=167.83 Aligned_cols=152 Identities=23% Similarity=0.253 Sum_probs=120.0
Q ss_pred ceeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||++.. ..+.+|+.++|+++|+|++.....+++++.+++|+|||||.+|...+.
T Consensus 5 i~ii-Gh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~ 83 (195)
T cd01884 5 VGTI-GHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMI 83 (195)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHH
Confidence 4455 77777877762 124689999999999999999999999999999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+..++..++.+++..+...++| +|+++||+|+.. + .+..+.+.+.+...+...++. ...
T Consensus 84 ~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~-~~~~~~~~~~i~~~l~~~g~~----~~~ 157 (195)
T cd01884 84 TGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD-D-EELLELVEMEVRELLSKYGFD----GDN 157 (195)
T ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-c-HHHHHHHHHHHHHHHHHhccc----ccC
Confidence 999999999999999999999999999999999998 789999999863 2 223333333333333332221 224
Q ss_pred eeeeeeeecccCCcch
Q psy11896 148 IRNIGISAHIDSGKTT 163 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~ 163 (1043)
.+++|+||++|.|+.+
T Consensus 158 v~iipiSa~~g~n~~~ 173 (195)
T cd01884 158 TPIVRGSALKALEGDD 173 (195)
T ss_pred CeEEEeeCccccCCCC
Confidence 6789999999999753
No 136
>COG1159 Era GTPase [General function prediction only]
Probab=99.70 E-value=1.8e-16 Score=167.73 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=95.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.--|||+|.+|+|||||+|+|+.+.-.+ ..+..++|.......+..+++++.|+||||..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisI--------------------vS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih 65 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISI--------------------VSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIH 65 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEe--------------------ecCCcchhhhheeEEEEcCCceEEEEeCCCCC
Confidence 3459999999999999999998665443 22366677777777778889999999999953
Q ss_pred C--------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 D--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d--------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
. ....+..++..+|.+++|+|+.++.....+.++..+...+.|+++++||+|+..
T Consensus 66 ~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 66 KPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred CcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 3 234467788999999999999999999999999999887889999999999874
No 137
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=4.5e-17 Score=178.67 Aligned_cols=141 Identities=37% Similarity=0.497 Sum_probs=127.1
Q ss_pred CccccCCChhhhhhcCCccccceEEEEec-----CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 94 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-----~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~ 94 (1043)
+.+.++|++..|+++|+|+..+...+.+. .+.++|||||||.||.-++.+++..|.++++||||+.|+..|+...
T Consensus 41 m~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN 120 (603)
T COG0481 41 MRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN 120 (603)
T ss_pred HHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHH
Confidence 56678899999999999999998877764 3689999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 95 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 95 ~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
...+.+.+.-+|-|+||+||+.+++++..+++++.++ +.-...+.+||++|.|++++++.+....|
T Consensus 121 ~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iG-------------id~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 121 VYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG-------------IDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred HHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhC-------------CCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 8888889999999999999999999999999888764 33345688999999999999999998776
No 138
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.69 E-value=9.4e-17 Score=197.52 Aligned_cols=240 Identities=22% Similarity=0.229 Sum_probs=170.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+..... .....|+|++.....+.++++.++++||||+.+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~---------------------vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ys 62 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQR---------------------VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCc---------------------cCCCCCceEeeEEEEEEcCceEEEEEECCCccc
Confidence 57999999999999999999633211 122578899888888899999999999999988
Q ss_pred chHH--------H--HHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC-CCHHHHHHHHHHH
Q psy11896 280 FTVE--------V--ERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQMRQK 346 (1043)
Q Consensus 280 f~~e--------~--~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~-~~~~~~~~~i~~~ 346 (1043)
|... . ...+ ..+|++++|+|+.+.. +....+.++.+.++|+++|+||+|+.+ .......+++.+.
T Consensus 63 l~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~ 140 (772)
T PRK09554 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSAR 140 (772)
T ss_pred cccccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHH
Confidence 7531 1 1222 3789999999998753 334566778889999999999999863 3445567888889
Q ss_pred hCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC-ChHHHHHHhccC
Q psy11896 347 VGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG-DEILGEMFLEEK 425 (1043)
Q Consensus 347 l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~-dd~l~~~~l~~~ 425 (1043)
++..+.+++.+.+.+ ...+.+.+... .+ ..+ ....+.|++..+.+++.++.+.+.+++. ++.++.+|+++.
T Consensus 141 LG~pVvpiSA~~g~G--IdeL~~~I~~~---~~-~~~--~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEgD 212 (772)
T PRK09554 141 LGCPVIPLVSTRGRG--IEALKLAIDRH---QA-NEN--VELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEGD 212 (772)
T ss_pred hCCCEEEEEeecCCC--HHHHHHHHHHh---hh-ccC--CcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcCc
Confidence 998777776655443 11111111110 01 001 1124467777777888888888877765 778899999987
Q ss_pred CCCHH------HHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhC
Q psy11896 426 SISED------DIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYL 470 (1043)
Q Consensus 426 ~~~~~------~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~l 470 (1043)
..+.+ +..+.+++........|.+++++.+..+++.+++.+....
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 213 IYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55443 4445555555555567888999999999999999998654
No 139
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.69 E-value=2.4e-16 Score=162.60 Aligned_cols=155 Identities=35% Similarity=0.468 Sum_probs=120.1
Q ss_pred ceeeeeecccccccCCcc---------------ccCCChhhhhhcCCccccceEEEEe-----cCeeEEEEeCCCCcchH
Q psy11896 5 VKIIHIKQEQVRGKDNVG---------------AVMDSMELERQRGITIQSAATYTLW-----KDHNINIIDTPGHVDFT 64 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~---------------~~~d~~~~e~~~G~T~~~~~~~~~~-----~~~~i~liDTPG~~~~~ 64 (1043)
+.++ |..++||+|...+ ++.++.+.++++|+|.+.....+.+ .+.+++||||||+.++.
T Consensus 3 i~~v-G~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 3 FSII-AHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred EEEE-eecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 4455 9999999998433 3456667788999999887666644 35679999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+..+++.+|++|+|+|++++...++...+..+...++|+++|+||+|+.+.......+++.+.++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~------------- 148 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLG------------- 148 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhC-------------
Confidence 9999999999999999999988777777776666667899999999999875444333344443321
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
....+++++||++|.|+++|++.+...++
T Consensus 149 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 149 LDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 12235789999999999999999986653
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.69 E-value=5.4e-16 Score=158.11 Aligned_cols=114 Identities=35% Similarity=0.407 Sum_probs=92.3
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEcCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGH 277 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDtPG~ 277 (1043)
.|+++|++|+|||||+++|+..... ....+++|.........+. +..+++|||||+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~ 60 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA---------------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH 60 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc---------------------cccCCCeEEeeccEEEecccCCcceEEEEeCCCc
Confidence 5899999999999999999732110 1123455655555555554 789999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 335 (1043)
.+|......+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+...+
T Consensus 61 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 61 EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN 118 (168)
T ss_pred HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc
Confidence 9998888888999999999999999988888888888888999999999999987433
No 141
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.69 E-value=1.5e-16 Score=166.40 Aligned_cols=163 Identities=20% Similarity=0.241 Sum_probs=125.1
Q ss_pred cceeeeeecccccccCCcccc-------CCChhhhhhcCCccccceEEEEec--------------CeeEEEEeCCCCcc
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAV-------MDSMELERQRGITIQSAATYTLWK--------------DHNINIIDTPGHVD 62 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~-------~d~~~~e~~~G~T~~~~~~~~~~~--------------~~~i~liDTPG~~~ 62 (1043)
++.++ |..++||+|.....+ .|...+|+++|+|++.....+.+. ++++++|||||+.+
T Consensus 2 ~i~i~-G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 2 NVGVL-GHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred eEEEE-ecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 46677 999999999854443 588899999999999988777765 67899999999999
Q ss_pred hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhhhccccccccC
Q psy11896 63 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 63 ~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
+...+..+...+|++++|+|++++...++...+......++|+++++||+|+... ..+...+++++.+...+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~----- 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK----- 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh-----
Confidence 8888888889999999999999888777766666666668899999999998743 2333345554443322111
Q ss_pred CCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 142 HKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
......+++++||++|.|+++|++.+....+
T Consensus 156 -~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 -TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred -cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 0112347899999999999999999876554
No 142
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.69 E-value=5.9e-17 Score=172.70 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=115.7
Q ss_pred cccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC-------CCc
Q psy11896 16 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-------GVQ 88 (1043)
Q Consensus 16 k~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~-------~~~ 88 (1043)
++++.+++++|+.++|+++|+|++.....+++++.++++|||||+.+|...+..+++.+|++|+|+|+++ +..
T Consensus 43 ~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~ 122 (219)
T cd01883 43 KGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKG 122 (219)
T ss_pred CcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccc
Confidence 3334455789999999999999999999999999999999999999999999999999999999999987 345
Q ss_pred hhHHHHHHHHHhcC-CCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHH
Q psy11896 89 SQTLTVNRQMKRYD-VPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTE 166 (1043)
Q Consensus 89 ~~~~~~~~~l~~~~-~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~ 166 (1043)
.++...+..+...+ +|+++++||+|+...+ .....+.+.+.+...+...++ .....+++++||++|.|+++--+
T Consensus 123 ~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~----~~~~~~ii~iSA~tg~gi~~~~~ 198 (219)
T cd01883 123 GQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGY----NPKDVPFIPISGLTGDNLIEKSE 198 (219)
T ss_pred cchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCC----CcCCceEEEeecCcCCCCCcCCC
Confidence 56666666666666 5789999999997421 111122333332222222111 11235789999999999997777
Q ss_pred HHHhhccc
Q psy11896 167 RILFYTGR 174 (1043)
Q Consensus 167 ~l~~~l~~ 174 (1043)
.+.||.++
T Consensus 199 ~~~w~~g~ 206 (219)
T cd01883 199 NMPWYKGP 206 (219)
T ss_pred CCCCccCC
Confidence 77777765
No 143
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.68 E-value=7.5e-17 Score=159.30 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=84.8
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+|+|+.....+ ...+|+|+......+.+++..+.|+|+||..++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v---------------------~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl 60 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKV---------------------GNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSL 60 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEE---------------------EESTTSSSEEEEEEEEETTEEEEEEE----SSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcee---------------------cCCCCCCeeeeeEEEEecCceEEEEECCCcccC
Confidence 69999999999999999998544221 226789999999999999999999999996543
Q ss_pred h---H-H--HHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 281 T---V-E--VERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~---~-e--~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
. . | +..++ ...|++++|+||.. ..+...+..++.+.++|+++++||+|..
T Consensus 61 ~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 61 SSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp SSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred CCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 2 2 2 23333 68999999999987 4566778888899999999999999964
No 144
>COG1159 Era GTPase [General function prediction only]
Probab=99.67 E-value=2.6e-16 Score=166.54 Aligned_cols=170 Identities=19% Similarity=0.147 Sum_probs=136.3
Q ss_pred ceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhhcC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVLD 75 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~aD 75 (1043)
+-|+ |-+.+||++..-+.+...- -..++|+|||....+.+..++.++.|+||||+.. +...+..++.++|
T Consensus 9 VaIi-GrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD 87 (298)
T COG1159 9 VAII-GRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD 87 (298)
T ss_pred EEEE-cCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence 3455 8888888887655555443 4778999999999999999999999999999873 6677889999999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
+++||+|+.+++...++.++..++..+.|+++++||+|+...+.. + ..+.+.+. ....|..++|+||
T Consensus 88 lilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~-l-~~~~~~~~-----------~~~~f~~ivpiSA 154 (298)
T COG1159 88 LILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV-L-LKLIAFLK-----------KLLPFKEIVPISA 154 (298)
T ss_pred EEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH-H-HHHHHHHH-----------hhCCcceEEEeec
Confidence 999999999999999999999998878899999999998764321 1 22222221 2245568999999
Q ss_pred cccCCcchHHHHHHhhccccccccccccccccc
Q psy11896 156 HIDSGKTTLTERILFYTGRISEMHETSRWISNE 188 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~ 188 (1043)
++|.|++.|.+.+..++++-+-+++.+...+..
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~ 187 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRP 187 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCCcCChhhccCCh
Confidence 999999999999999999877777666554444
No 145
>KOG1143|consensus
Probab=99.67 E-value=1.8e-15 Score=160.70 Aligned_cols=286 Identities=17% Similarity=0.211 Sum_probs=198.7
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccc-cccchhhhhhcCceEeeeeEEEEe--------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGA-VMDSMELERQRGITIQSAATYTLW-------------- 264 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~-~~d~~~~e~~~giTi~~~~~~~~~-------------- 264 (1043)
.+++++|..|+|||||+..|. .+..++|..-++ -++..+.|...|-|-..+.-.+-+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLT--------QgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLT--------QGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEEecCcccCcceeeeeee--------cccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 469999999999999999886 234455543232 356667787777665433322222
Q ss_pred -------cCeeEEEEcCCCCCCchHHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC-
Q psy11896 265 -------KDHNINIIDTPGHVDFTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA- 334 (1043)
Q Consensus 265 -------~~~~i~liDtPG~~df~~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~- 334 (1043)
..+.++|||.+||..|...+..+| .-.|.|++||.|..|....|++++..+...++|++++++|||+...
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 136799999999999999999988 4569999999999999999999999999999999999999999854
Q ss_pred CHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCC
Q psy11896 335 DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGD 414 (1043)
Q Consensus 335 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~d 414 (1043)
..+.+++++.+.+...-+ ..+|.. +...|
T Consensus 320 ~~~~tv~~l~nll~~~Gc-~kvp~~--------------------------------------------------Vt~~d 348 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGC-TKVPKR--------------------------------------------------VTTKD 348 (591)
T ss_pred hHHHHHHHHHHHHhhcCc-cccceE--------------------------------------------------eechH
Confidence 245666666665542111 001100 00011
Q ss_pred hHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCC
Q psy11896 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNP 494 (1043)
Q Consensus 415 d~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~ 494 (1043)
|. ..+-.+ ...+.++|+|++|+.+|+|++ ||..+.+.||+-.... .+ ..+
T Consensus 349 dA----------------v~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~-e~---------~~L-- 398 (591)
T KOG1143|consen 349 DA----------------VKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAE-ER---------IQL-- 398 (591)
T ss_pred HH----------------HHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChH-HH---------HHH--
Confidence 11 111112 457789999999999999995 5566666665433211 10 000
Q ss_pred CCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC----cEEEeceEEEeccCCeeecCeecCCCEEEE
Q psy11896 495 SRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD----KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL 569 (1043)
Q Consensus 495 ~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~----~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i 569 (1043)
...|.-..|-.++..|. |.+.-+-+-+|.++.|+.+.+.+.+ .+.+|..|. +.+.++..+.||+-..+
T Consensus 399 ---~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqaAsl 471 (591)
T KOG1143|consen 399 ---VQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQAASL 471 (591)
T ss_pred ---hcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCccceee
Confidence 23455667778888888 9999999999999999999887643 456778887 77778888999998766
Q ss_pred cc-C----ccccCcEEe
Q psy11896 570 FG-V----DCASGDTFV 581 (1043)
Q Consensus 570 ~g-l----~~~~Gdtl~ 581 (1043)
.= . .++.|.++.
T Consensus 472 sl~d~D~~~LR~GMVl~ 488 (591)
T KOG1143|consen 472 SLNDPDGVSLRRGMVLA 488 (591)
T ss_pred eccCCCccchhcceEEe
Confidence 42 1 235566665
No 146
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.67 E-value=2.5e-16 Score=184.69 Aligned_cols=182 Identities=24% Similarity=0.292 Sum_probs=130.8
Q ss_pred ccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC---CchhH
Q psy11896 15 VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG---VQSQT 91 (1043)
Q Consensus 15 gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~---~~~~~ 91 (1043)
|+.++.++|++|..++|+++|+|++.....+.+++.+++|||||||.+|...+..+++.+|++++|+|++++ ...++
T Consensus 50 g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t 129 (426)
T TIGR00483 50 GKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQT 129 (426)
T ss_pred CCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCch
Confidence 444455678899999999999999999999999999999999999999999999999999999999999987 55566
Q ss_pred HHHHHHHHhcCC-CEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 92 LTVNRQMKRYDV-PCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 92 ~~~~~~l~~~~~-piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
.+++..+...+. |+++++||+|+.+.+.++ .+.+.+.+..+++..++. ....+++++||++|.|++++...+.|
T Consensus 130 ~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~-~~~~~~ei~~~~~~~g~~----~~~~~~i~iSA~~g~ni~~~~~~~~w 204 (426)
T TIGR00483 130 REHAFLARTLGINQLIVAINKMDSVNYDEEE-FEAIKKEVSNLIKKVGYN----PDTVPFIPISAWNGDNVIKKSENTPW 204 (426)
T ss_pred HHHHHHHHHcCCCeEEEEEEChhccCccHHH-HHHHHHHHHHHHHHcCCC----cccceEEEeeccccccccccccCCcc
Confidence 666555555564 588999999997544322 223333333333222211 12357899999999999998888888
Q ss_pred hccc-cccccccccccccc-cccCCCCccceee
Q psy11896 171 YTGR-ISEMHETSRWISNE-SLSEHKPIEYIRN 201 (1043)
Q Consensus 171 ~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~ir~ 201 (1043)
|.++ +.+.+.....+... ..+.+++.+++.+
T Consensus 205 ~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~ 237 (426)
T TIGR00483 205 YKGKTLLEALDALEPPEKPTDKPLRIPIQDVYS 237 (426)
T ss_pred ccchHHHHHHhcCCCCCCccCCCcEEEEEEEEe
Confidence 8776 55665543333221 2244555555544
No 147
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.66 E-value=6.7e-16 Score=186.15 Aligned_cols=156 Identities=36% Similarity=0.473 Sum_probs=129.1
Q ss_pred ceeeeeecccccccCC---------------ccccCCChhhhhhcCCccccceEEEEec-----CeeEEEEeCCCCcchH
Q psy11896 5 VKIIHIKQEQVRGKDN---------------VGAVMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFT 64 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~---------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~-----~~~i~liDTPG~~~~~ 64 (1043)
+.|+ |..++||||.. .++++|+.++|+++|+|++.....+.|. +++++|||||||.+|.
T Consensus 10 i~Ii-Ghvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 10 FSII-AHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEE-CCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 4455 89999998871 3467899999999999999988877774 5789999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+..+++.+|++|+|+|++++++.++...+..+...++|+++|+||+|+...+.....+++.+.++
T Consensus 89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg------------- 155 (600)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIG------------- 155 (600)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhC-------------
Confidence 9999999999999999999999999988888887778999999999999976555544455544321
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.....++++||++|.|+++|++.+...+++
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 112357899999999999999999877653
No 148
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.66 E-value=4.7e-16 Score=157.67 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=116.9
Q ss_pred eeeeecccccccCCcccc---CCChhhhhhcCCccccceEEEEec-CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 7 IIHIKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 7 i~~~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
.+.|..++||+|...+.+ .+.++.+..+++|++..+..+.+. +.++.+|||||+.+|...+..+++.+|++++|+|
T Consensus 4 ~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d 83 (164)
T cd04171 4 GTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVA 83 (164)
T ss_pred EEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEE
Confidence 444999999999977665 467778888999999988888876 7899999999999998888889999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCC-CEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 83 AVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 83 a~~~~~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
++++...+....+..+...+. |+++++||+|+.... .....+.+.+.+. . ......+++++||++|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 84 ADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLA----G------TFLADAPIFPVSAVTGEG 153 (164)
T ss_pred CCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHH----h------cCcCCCcEEEEeCCCCcC
Confidence 988766666666555555565 999999999997532 1122333333321 1 001224679999999999
Q ss_pred cchHHHHHH
Q psy11896 161 KTTLTERIL 169 (1043)
Q Consensus 161 i~~L~~~l~ 169 (1043)
++++++.+.
T Consensus 154 v~~l~~~l~ 162 (164)
T cd04171 154 IEELKEYLD 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998875
No 149
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.66 E-value=4.8e-16 Score=186.67 Aligned_cols=163 Identities=31% Similarity=0.370 Sum_probs=134.1
Q ss_pred ceeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.|+ |..++||||.. -.+++|+.++|+++|+|+......+.|++++++|||||||.+|..++.
T Consensus 4 IaIi-GHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 4 IAII-AHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEE-cCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 3455 88888888761 235689999999999999999999999999999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
.+++.+|++++|+|+.+++..++..++..+...++|+|+|+||+|+.+....+..+++...+... +.. ......
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~----g~~--~e~l~~ 156 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL----GAD--DEQLDF 156 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh----ccc--cccccC
Confidence 99999999999999999999999999999999999999999999998766666666666554321 111 111124
Q ss_pred eeeeeeecccC----------CcchHHHHHHhhccc
Q psy11896 149 RNIGISAHIDS----------GKTTLTERILFYTGR 174 (1043)
Q Consensus 149 ~ii~iSa~~g~----------Gi~~L~~~l~~~l~~ 174 (1043)
+++++||++|. |++.|++.+.++++.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 68999999996 788999999887764
No 150
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.66 E-value=6.9e-16 Score=185.85 Aligned_cols=156 Identities=36% Similarity=0.480 Sum_probs=127.5
Q ss_pred ceeeeeecccccccCC---------------ccccCCChhhhhhcCCccccceEEEEec--C---eeEEEEeCCCCcchH
Q psy11896 5 VKIIHIKQEQVRGKDN---------------VGAVMDSMELERQRGITIQSAATYTLWK--D---HNINIIDTPGHVDFT 64 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~---------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~---~~i~liDTPG~~~~~ 64 (1043)
+.|+ |..++||||.. .++++|+.++|+++|+|++.....+.|. + ++++|||||||.+|.
T Consensus 6 i~II-Gh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 6 FSII-AHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 4455 99999998871 2457789999999999999888777663 2 689999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+..+++.+|++|+|+|++++.+.++...+..+...++|+++|+||+|+.+.+.....+++.+.++
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg------------- 151 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIG------------- 151 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhC-------------
Confidence 9999999999999999999999998888877777778899999999999976555444455544332
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
....+++++||++|.|+++|++.+...+++
T Consensus 152 ~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 152 LDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 122357899999999999999999877653
No 151
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.66 E-value=1.3e-15 Score=163.63 Aligned_cols=164 Identities=40% Similarity=0.511 Sum_probs=135.4
Q ss_pred eecccccccCC------------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHh
Q psy11896 10 IKQEQVRGKDN------------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL 71 (1043)
Q Consensus 10 ~~~~~gk~s~~------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~ 71 (1043)
|..++||+|.. .++.+|+.++|+++|+|+......+.+++.++++|||||+.+|...+..++
T Consensus 6 G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l 85 (237)
T cd04168 6 AHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSL 85 (237)
T ss_pred cCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHH
Confidence 77888887661 236678999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccC----------
Q psy11896 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSE---------- 141 (1043)
Q Consensus 72 ~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~---------- 141 (1043)
+.+|++++|+|++++...++..+++.+...++|+++++||+|+...+..+.++++++.++...-..+++.
T Consensus 86 ~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~ 165 (237)
T cd04168 86 SVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNE 165 (237)
T ss_pred HHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeee
Confidence 9999999999999999999999999998899999999999999888888888898887754221111000
Q ss_pred ----------------------C----------------CCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 142 ----------------------H----------------KPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 142 ----------------------~----------------~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
. ..-.+.|++.-||.++.|++.|++.+..++|
T Consensus 166 ~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 166 IDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred ccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 0 0123456677799999999999999988876
No 152
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.66 E-value=5.6e-16 Score=186.66 Aligned_cols=159 Identities=23% Similarity=0.246 Sum_probs=128.1
Q ss_pred eeeeeecccccccCCcccc---CCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 6 KIIHIKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
.++ |...+||||...+.. +|.+++|+++|+|++..+..+.+++..++|||||||.+|...+..++.++|++++|+|
T Consensus 4 ~ii-G~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVD 82 (581)
T TIGR00475 4 ATA-GHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVD 82 (581)
T ss_pred EEE-CCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEE
Confidence 344 899999999966665 5888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 83 AVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 83 a~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+++++..++.+++..+...++| +++|+||+|+.+.+.. ...+++.+.+ ...++ ....+++++||++|.|
T Consensus 83 a~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l----~~~~~-----~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 83 ADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL----NSYIF-----LKNAKIFKTSAKTGQG 153 (581)
T ss_pred CCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH----HHhCC-----CCCCcEEEEeCCCCCC
Confidence 9999999999988888888999 9999999999753211 1122333222 11111 0135789999999999
Q ss_pred cchHHHHHHhhccc
Q psy11896 161 KTTLTERILFYTGR 174 (1043)
Q Consensus 161 i~~L~~~l~~~l~~ 174 (1043)
++++++.+...+..
T Consensus 154 I~eL~~~L~~l~~~ 167 (581)
T TIGR00475 154 IGELKKELKNLLES 167 (581)
T ss_pred chhHHHHHHHHHHh
Confidence 99999988776654
No 153
>PRK15494 era GTPase Era; Provisional
Probab=99.65 E-value=2.2e-15 Score=170.50 Aligned_cols=116 Identities=21% Similarity=0.216 Sum_probs=88.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..+|+++|++|+|||||+++|+.....+ .....++|.......+.+++.+++||||||
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i--------------------vs~k~~tTr~~~~~~~~~~~~qi~~~DTpG 109 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI--------------------VTPKVQTTRSIITGIITLKDTQVILYDTPG 109 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee--------------------ccCCCCCccCcEEEEEEeCCeEEEEEECCC
Confidence 345689999999999999999997432111 122445666555556778899999999999
Q ss_pred CCCchH--------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 277 HVDFTV--------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~--------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
..+... ....+++.+|++++|+|+.++.......++..+...+.|.++|+||+|+.
T Consensus 110 ~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 110 IFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred cCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 854321 22345789999999999998888777777777777788999999999985
No 154
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.65 E-value=2.5e-15 Score=165.52 Aligned_cols=111 Identities=21% Similarity=0.147 Sum_probs=82.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
.|+++|++|+|||||+|+|+.....+ .....++|..........++.++.|+||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~--------------------vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI--------------------TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee--------------------cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 48999999999999999998542111 1124455555444444456778999999997653
Q ss_pred --------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 281 --------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 --------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
...+..+++.+|++++|+|+..+.... ..++..+...+.|+++|+||+|+.
T Consensus 62 ~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 62 KHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 122456778999999999999876554 556666777889999999999986
No 155
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.65 E-value=7.9e-16 Score=137.28 Aligned_cols=81 Identities=28% Similarity=0.481 Sum_probs=77.2
Q ss_pred CCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccC
Q psy11896 500 HPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASG 577 (1043)
Q Consensus 500 ~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~G 577 (1043)
+||+++|||+.+|++ |+++|+|||||+|++||.|++.. +.++++.+||.++|.+..+++++.||||+++.|+ ++.+|
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~G 80 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRVG 80 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcCc
Confidence 699999999999999 99999999999999999999887 6678999999999999999999999999999999 88999
Q ss_pred cEEe
Q psy11896 578 DTFV 581 (1043)
Q Consensus 578 dtl~ 581 (1043)
|||+
T Consensus 81 dtl~ 84 (85)
T cd03690 81 DVLG 84 (85)
T ss_pred cccC
Confidence 9986
No 156
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.64 E-value=1.7e-15 Score=158.66 Aligned_cols=154 Identities=33% Similarity=0.406 Sum_probs=117.8
Q ss_pred cceeeeeecccccccCCcccc----------------CCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHH
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAV----------------MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV 67 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~----------------~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 67 (1043)
++.++ |..++||+|...+.+ .|..+.|.+.|+|+......+.+++.++++|||||+.+|...+
T Consensus 4 ~i~iv-G~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 4 NIAII-AHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred EEEEE-ecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 45555 999999999844333 3445668889999999988899999999999999999999999
Q ss_pred HHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 68 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
..+++.+|++++|+|++++...+...++..+...++|+++|+||+|+.........+++.+.+... ........
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 156 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIEL------GATEEQLD 156 (194)
T ss_pred HHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHh------CCccccCc
Confidence 999999999999999998777777666676667789999999999997655544455555443211 00011112
Q ss_pred eeeeeeeecccCCcchH
Q psy11896 148 IRNIGISAHIDSGKTTL 164 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L 164 (1043)
.+++++||++|.|+.++
T Consensus 157 ~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 157 FPVLYASAKNGWASLNL 173 (194)
T ss_pred cCEEEeehhcccccccc
Confidence 47799999999998655
No 157
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.64 E-value=2e-15 Score=165.00 Aligned_cols=125 Identities=62% Similarity=0.894 Sum_probs=111.1
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
++++|+.++|+++|+|++.....++|++++++||||||+.+|...+..+++.+|++|+|+|+..++..++..+++.+...
T Consensus 36 ~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~ 115 (270)
T cd01886 36 GATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY 115 (270)
T ss_pred ccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 102 DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 102 ~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
++|+++++||+|+.+.+.++.++++++.++ ...+..++|+|+..+
T Consensus 116 ~~p~ivviNK~D~~~a~~~~~~~~l~~~l~------------~~~~~~~~Pisa~~~ 160 (270)
T cd01886 116 NVPRIAFVNKMDRTGADFFRVVEQIREKLG------------ANPVPLQLPIGEEDD 160 (270)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHhC------------CCceEEEeccccCCC
Confidence 999999999999987777777788877653 123455788988744
No 158
>PRK15494 era GTPase Era; Provisional
Probab=99.63 E-value=1.9e-15 Score=171.11 Aligned_cols=167 Identities=15% Similarity=0.080 Sum_probs=127.0
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
+|+.++ |..++||+|...+.+..... ...++++|++...+.+.+++.++.||||||+.+ +...+..+++.
T Consensus 53 ~kV~iv-G~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~ 131 (339)
T PRK15494 53 VSVCII-GRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHS 131 (339)
T ss_pred eEEEEE-cCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhh
Confidence 367777 99999999998777766543 356889999998888899999999999999853 33334556889
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|+++++...+..++..+...+.|.++|+||+|+.+... ..+.+.+.. ...+..++++
T Consensus 132 aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~----~~~~~~l~~-----------~~~~~~i~~i 196 (339)
T PRK15494 132 ADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYL----NDIKAFLTE-----------NHPDSLLFPI 196 (339)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccH----HHHHHHHHh-----------cCCCcEEEEE
Confidence 9999999999887777766677777777889999999999865322 222222210 1123568999
Q ss_pred eecccCCcchHHHHHHhhcccccccccccccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWI 185 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~ 185 (1043)
||++|.|+++|++.+...+++-+-+++.+...
T Consensus 197 SAktg~gv~eL~~~L~~~l~~~~~~~~~~~~t 228 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKISPWLYAEDDIT 228 (339)
T ss_pred eccCccCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 99999999999999999998766555555443
No 159
>PRK10218 GTP-binding protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=181.41 Aligned_cols=165 Identities=33% Similarity=0.402 Sum_probs=137.3
Q ss_pred ccceeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 66 (1043)
.++.|+ |..++||||.. ..+++|+.++|+++|+|+......+.|+++++++||||||.+|...
T Consensus 6 RnIaIi-Gh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 6 RNIAII-AHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 456677 99999999871 1356788999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
+..+++.+|++|+|+|+.+++..++..++..+...++|.++++||+|+.++...+.++++.+.+... +.. ....
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l----~~~--~~~~ 158 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL----DAT--DEQL 158 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc----Ccc--cccc
Confidence 9999999999999999999999999999999888999999999999998777777777777665321 111 1112
Q ss_pred ceeeeeeeecccC----------CcchHHHHHHhhccc
Q psy11896 147 YIRNIGISAHIDS----------GKTTLTERILFYTGR 174 (1043)
Q Consensus 147 ~~~ii~iSa~~g~----------Gi~~L~~~l~~~l~~ 174 (1043)
..+++++||++|. |+..|++.+.+++++
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 2578999999998 577888888877763
No 160
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.63 E-value=2.7e-15 Score=151.32 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=103.4
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
+..++..+|++++|+|++++....+..+.+.+... ++|+++|+||+|+... +.. ..+...+. . .
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~~-~~~~~~~~---------~--~ 67 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WVT-ARWVKILS---------K--E 67 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HHH-HHHHHHHh---------c--C
Confidence 45688999999999999987666666666666543 4899999999999642 221 22222221 0 1
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccC
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
..+ .++++||+++.|+++|++.+..++.. . +...-.+|+++|.+|+|||||+|+|+....
T Consensus 68 ~~~-~~~~iSa~~~~~~~~L~~~l~~~~~~-------~------------~~~~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 68 YPT-IAFHASINNPFGKGSLIQLLRQFSKL-------H------------SDKKQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred CcE-EEEEeeccccccHHHHHHHHHHHHhh-------h------------ccccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 112 25889999999999999998765431 0 001125799999999999999999974322
Q ss_pred CceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 225 RISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 225 ~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.. .....|+|.......+ +..+.|+||||.
T Consensus 128 ~~--------------------~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 128 CK--------------------VAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ee--------------------eCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 11 1234566765544332 345889999993
No 161
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.63 E-value=2e-15 Score=182.22 Aligned_cols=155 Identities=21% Similarity=0.227 Sum_probs=124.5
Q ss_pred eecccccccCCcccc---CCChhhhhhcCCccccceEEEEe-cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 10 IKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
|...+||||...+.+ +|.+++|+++|+|++..+..+.. ++..+.|||||||.+|...+..++..+|++++|+|+++
T Consensus 7 GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e 86 (614)
T PRK10512 7 GHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD 86 (614)
T ss_pred CCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 888899999866655 68899999999999998877765 45679999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcch
Q psy11896 86 GVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTT 163 (1043)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~ 163 (1043)
++..++.+++..+...++| +++|+||+|+.+.+ .+...+++.+.+. . ......+++++||++|.|+++
T Consensus 87 g~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~----~------~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 87 GVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLR----E------YGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHH----h------cCCCCCcEEEEeCCCCCCCHH
Confidence 9999999999988888888 57999999997422 1222333333221 1 112235789999999999999
Q ss_pred HHHHHHhhccc
Q psy11896 164 LTERILFYTGR 174 (1043)
Q Consensus 164 L~~~l~~~l~~ 174 (1043)
|++.+..+..+
T Consensus 157 L~~~L~~~~~~ 167 (614)
T PRK10512 157 LREHLLQLPER 167 (614)
T ss_pred HHHHHHHhhcc
Confidence 99999876543
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.63 E-value=3.9e-15 Score=149.65 Aligned_cols=111 Identities=23% Similarity=0.311 Sum_probs=89.1
Q ss_pred EEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchH
Q psy11896 203 GISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 282 (1043)
Q Consensus 203 ~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~ 282 (1043)
+++|++|+|||||+++|+...... .+...++|.........+.++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI--------------------VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe--------------------ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh
Confidence 479999999999999997431110 112345666666677778889999999999988654
Q ss_pred --------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 283 --------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 283 --------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+....++.+|++++|+|+.++.......+++++...+.|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 61 GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 455678899999999999988888888888888888999999999999864
No 163
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.62 E-value=1.7e-15 Score=185.87 Aligned_cols=176 Identities=24% Similarity=0.314 Sum_probs=129.2
Q ss_pred ccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHH
Q psy11896 17 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 96 (1043)
Q Consensus 17 ~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~ 96 (1043)
.++.++|++|..++|+++|+|++.....+++++.+++|+|||||.+|...+..++..+|++++|+|+..++..++.+++.
T Consensus 71 ~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~ 150 (632)
T PRK05506 71 DEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF 150 (632)
T ss_pred CcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHhcCC-CEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-
Q psy11896 97 QMKRYDV-PCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR- 174 (1043)
Q Consensus 97 ~l~~~~~-piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~- 174 (1043)
.+...++ |+++++||+|+.+.+.+ .++.+...+..++...+ +...+++|+||++|.|++++.+.+.||.++
T Consensus 151 ~~~~~~~~~iivvvNK~D~~~~~~~-~~~~i~~~i~~~~~~~~------~~~~~iipiSA~~g~ni~~~~~~~~wy~g~t 223 (632)
T PRK05506 151 IASLLGIRHVVLAVNKMDLVDYDQE-VFDEIVADYRAFAAKLG------LHDVTFIPISALKGDNVVTRSARMPWYEGPS 223 (632)
T ss_pred HHHHhCCCeEEEEEEecccccchhH-HHHHHHHHHHHHHHHcC------CCCccEEEEecccCCCccccccCCCcccHhH
Confidence 8877775 58899999999753332 23333333322222211 223468999999999999877766777665
Q ss_pred ccccccccccccc-ccccCCCCccce
Q psy11896 175 ISEMHETSRWISN-ESLSEHKPIEYI 199 (1043)
Q Consensus 175 ~~~~~~~~~~~~~-~~~~~~~~~~~i 199 (1043)
+.+.++....+.. ...+.+++.+.+
T Consensus 224 L~~~l~~~~~~~~~~~~p~r~~i~~v 249 (632)
T PRK05506 224 LLEHLETVEIASDRNLKDFRFPVQYV 249 (632)
T ss_pred HHHHHhcCCCCCCcCCCCceeeEEEE
Confidence 4444443332221 223444555444
No 164
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.62 E-value=2.5e-15 Score=133.85 Aligned_cols=80 Identities=38% Similarity=0.680 Sum_probs=76.6
Q ss_pred cEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcE
Q psy11896 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDT 579 (1043)
Q Consensus 502 ~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdt 579 (1043)
|+++|||+++|++ |+++|+|||||+|++||.|++...++++++.+|+.++|.+..+++++.||||+++.|+ ++.+|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 5799999999998 9999999999999999999999888889999999999999999999999999999999 8899999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 81 l~ 82 (83)
T cd04092 81 LV 82 (83)
T ss_pred Ee
Confidence 97
No 165
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.61 E-value=6.5e-15 Score=150.09 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=81.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
||+++|+.|+|||||+++|....... .+ . .......|+......+.+++..+.+|||||+.+|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~--------~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KG--------L--PPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cC--------C--cccccCCccccceEEEEECCEEEEEEECCCChhh
Confidence 68999999999999999997432110 00 0 0012233444445567778899999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcch-HHHHHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~-~t~~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
.......++.+|++++|+|+.+.-.. .....+..+. ..++|+++++||+|+..
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 99888899999999999999864211 1222222222 35789999999999864
No 166
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.60 E-value=7.9e-15 Score=161.65 Aligned_cols=169 Identities=20% Similarity=0.181 Sum_probs=114.1
Q ss_pred CCCCc-chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 57 TPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 57 TPG~~-~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
-|||. +...++...++.+|++++|+|++.+.......+.+.+ .++|+++|+||+|+... .. .....+.+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~--~~-~~~~~~~~~~--- 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP--AV-TKQWLKYFEE--- 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH--HH-HHHHHHHHHH---
Confidence 48887 4778889999999999999999987776666665554 36899999999999632 11 1222222110
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccH
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 215 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL 215 (1043)
...+++++||+++.|+++|.+.+.+.++...+...... ...+..+++++|.+|+|||||
T Consensus 76 ----------~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~vG~~nvGKSsl 134 (276)
T TIGR03596 76 ----------KGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKG-----------LKNRPIRAMIVGIPNVGKSTL 134 (276)
T ss_pred ----------cCCeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhcc-----------CCCCCeEEEEECCCCCCHHHH
Confidence 01357889999999999999999877654221111110 011246799999999999999
Q ss_pred HhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 216 TERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 216 ~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+|+|+...... ....+|+|.......+ +..+.++||||.
T Consensus 135 in~l~~~~~~~--------------------~~~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 135 INRLAGKKVAK--------------------VGNRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred HHHHhCCCccc--------------------cCCCCCeecceEEEEe---CCCEEEEECCCc
Confidence 99997432110 1224566766554333 246899999997
No 167
>KOG0084|consensus
Probab=99.60 E-value=2.4e-15 Score=148.51 Aligned_cols=158 Identities=15% Similarity=0.024 Sum_probs=121.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||++++ ||+++||+=..+++..|+++++....+.+|.....+++.+. ++.+|||+|+++|...+..++++|++||+
T Consensus 9 lFKiili-Gds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 9 LFKIILI-GDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred EEEEEEE-CCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 5899999 99999999999999999999999999999999888888765 69999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHHH-HHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVNRQ-MKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~~-l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|.++.-+......|.. +.+ .++|.++|.||+|+.....-. .+..+.+. ..... ...+.+||
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~--~~~a~~fa---------~~~~~--~~f~ETSA 154 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVS--TEEAQEFA---------DELGI--PIFLETSA 154 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecC--HHHHHHHH---------HhcCC--cceeeccc
Confidence 999997554444433322 222 367999999999986532111 11111121 00111 22578999
Q ss_pred cccCCcchHHHHHHhhcc
Q psy11896 156 HIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~ 173 (1043)
+++.|+++.+..++..+-
T Consensus 155 K~~~NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 155 KDSTNVEDAFLTLAKELK 172 (205)
T ss_pred CCccCHHHHHHHHHHHHH
Confidence 999999999998876553
No 168
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.60 E-value=1.5e-13 Score=164.25 Aligned_cols=170 Identities=21% Similarity=0.194 Sum_probs=116.4
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC------------------eeEEEEeCCCCcchHHH
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------------HNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~------------------~~i~liDTPG~~~~~~~ 66 (1043)
++.+.|...+||||...+............|+|.+.....+.+.. ..+.|||||||.+|...
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 345559999999998666555554444444577766555443321 13899999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-C--------------HHHHHHHHHHhhh
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-D--------------PYRVINQMRQKTS 131 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~--------------~~~~~~~l~~~~~ 131 (1043)
+..+++.+|++++|+|++++...++.+.+..+...++|+++++||+|+... . .......+.+.+.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~ 165 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVY 165 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999998888888889999999999998631 1 0001111111111
Q ss_pred h---ccccccccCC------CCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 132 R---WISNESLSEH------KPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 132 ~---~~~~~~l~~~------~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
. .+...++... ......+++|+||++|+|+++|.+.+......
T Consensus 166 ~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 166 NLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 1 1111122111 11234678999999999999999988765443
No 169
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=2e-14 Score=146.83 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=89.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+...... .+..+++|.......+.+++..+.+|||||+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI--------------------VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIR 61 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee--------------------ccCCCCCccCceeeEEEECCeeEEEEECCCCc
Confidence 3579999999999999999997432111 11234556655555667788889999999976
Q ss_pred Cch-----------HHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 279 DFT-----------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 279 df~-----------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+...
T Consensus 62 ~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 62 RKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred cccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 542 12344668999999999999988888888888888889999999999998753
No 170
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.60 E-value=5e-15 Score=131.14 Aligned_cols=80 Identities=78% Similarity=1.242 Sum_probs=76.7
Q ss_pred cEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccCccccCcEEe
Q psy11896 502 FIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFV 581 (1043)
Q Consensus 502 ~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~Gdtl~ 581 (1043)
|+++|||+.+|++|+++|+|||||+|++||.|++.+.++++++.+|+.++|.+..+++++.||||+++.|+++.+||||+
T Consensus 1 ~~a~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~~~~Gdtl~ 80 (81)
T cd04091 1 FVGLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGIDCASGDTFT 80 (81)
T ss_pred CeEEEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCCcccCCEec
Confidence 57999999999889999999999999999999999888889999999999999999999999999999999988999996
No 171
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.60 E-value=7.2e-15 Score=161.84 Aligned_cols=163 Identities=15% Similarity=0.033 Sum_probs=121.0
Q ss_pred cceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhhc
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVL 74 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~a 74 (1043)
++.++ |.+++||+|...+.+.++. .....|+||++...+....++.++.||||||+.+ +...+..+++.+
T Consensus 2 ~V~li-G~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAIL-GRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEE-CCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 46677 9999999999777776654 3567899999988777777788999999999864 233466788999
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|++++|+|++...... ..++..+...++|+++|+||+|+.. .....+.+..... ...+.+++++|
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~------------~~~~~~v~~iS 145 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAI------------LEDFKDIVPIS 145 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHh------------hcCCCceEEEe
Confidence 9999999999765443 5556667778899999999999863 2223232222110 01234789999
Q ss_pred ecccCCcchHHHHHHhhccccccccccc
Q psy11896 155 AHIDSGKTTLTERILFYTGRISEMHETS 182 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~~~~~~~~~ 182 (1043)
|++|.|+++|++.+...+++-+..++.+
T Consensus 146 A~~g~gi~~L~~~l~~~l~~~~~~~~~~ 173 (270)
T TIGR00436 146 ALTGDNTSFLAAFIEVHLPEGPFRYPED 173 (270)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCc
Confidence 9999999999999999887654444443
No 172
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.60 E-value=6.8e-15 Score=149.95 Aligned_cols=160 Identities=28% Similarity=0.273 Sum_probs=123.3
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
+.++ |..++||+|...+...+.......+++|.+.....+.+. +..+.+|||||+..+...+..++..+|++++|+
T Consensus 3 i~ii-G~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 3 VTVM-GHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEE-ecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 4455 999999999988877777777777888988877777764 678999999999998888888999999999999
Q ss_pred eCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCc
Q psy11896 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 82 Da~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
|++++...++...+..+...++|+++|+||+|+...........+....... . ... ....+++++||++|.|+
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~-~~~-~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 82 AADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQG-----E-DEW-GGDVQIVPTSAKTGEGI 154 (168)
T ss_pred ECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccc-----c-ccc-cCcCcEEEeecccCCCH
Confidence 9998777777777777778899999999999987544443333333221000 0 001 12346899999999999
Q ss_pred chHHHHHHhhc
Q psy11896 162 TTLTERILFYT 172 (1043)
Q Consensus 162 ~~L~~~l~~~l 172 (1043)
++|++.+.+..
T Consensus 155 ~~l~~~l~~~~ 165 (168)
T cd01887 155 DDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 173
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.60 E-value=5.1e-15 Score=154.41 Aligned_cols=167 Identities=17% Similarity=0.046 Sum_probs=109.1
Q ss_pred chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhcccccccc
Q psy11896 62 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLS 140 (1043)
Q Consensus 62 ~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~ 140 (1043)
.|...+..+++.+|++++|+|+++........+.. ...++|+++|+||+|+..... ......+.+.+. ..
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~--~~----- 93 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA--AA----- 93 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH--Hh-----
Confidence 36788888999999999999998755444444422 235789999999999864321 111122210000 00
Q ss_pred CCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHh
Q psy11896 141 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 141 ~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll 220 (1043)
.....+.+++++||++|.|+++|++.+...++ .-.+++++|.+|+|||||+|+|+
T Consensus 94 -~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~------------------------~~~~~~~~G~~nvGKStliN~l~ 148 (190)
T cd01855 94 -GLGLKPKDVILISAKKGWGVEELINAIKKLAK------------------------KGGDVYVVGATNVGKSTLINALL 148 (190)
T ss_pred -hcCCCcccEEEEECCCCCCHHHHHHHHHHHhh------------------------cCCcEEEEcCCCCCHHHHHHHHH
Confidence 01122235789999999999999999987653 11469999999999999999998
Q ss_pred cccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 221 FYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
........ .. ........+|+|.......+. ..+.++||||.
T Consensus 149 ~~~~~~~~----~~--------~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 149 KKDNGKKK----LK--------DLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred Hhcccccc----cc--------cccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 54321110 00 001123456888887766553 25799999994
No 174
>PRK12736 elongation factor Tu; Reviewed
Probab=99.59 E-value=6.6e-15 Score=170.41 Aligned_cols=162 Identities=23% Similarity=0.261 Sum_probs=122.9
Q ss_pred ceeeeeecccccccC----------------CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKD----------------NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~----------------~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||++. ...+.+|..++|+++|+|++.....+++++.+++|||||||.+|...+.
T Consensus 15 i~i~-Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~ 93 (394)
T PRK12736 15 IGTI-GHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMI 93 (394)
T ss_pred EEEE-ccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHH
Confidence 4455 7777777765 1123689999999999999998888888888999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+..++..++.+++.++...++| +|+++||+|+.+. ++..+.+.+.+..++...++. ...
T Consensus 94 ~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~--~~~~~~i~~~i~~~l~~~~~~----~~~ 167 (394)
T PRK12736 94 TGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD--EELLELVEMEVRELLSEYDFP----GDD 167 (394)
T ss_pred HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch--HHHHHHHHHHHHHHHHHhCCC----cCC
Confidence 999999999999999999999999999999999999 6789999998642 223333333333333322221 123
Q ss_pred eeeeeeeecccC--------CcchHHHHHHhhcc
Q psy11896 148 IRNIGISAHIDS--------GKTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~~g~--------Gi~~L~~~l~~~l~ 173 (1043)
.+++++||++|. ++++|++.+...++
T Consensus 168 ~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 168 IPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred ccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 578999999983 45666666655543
No 175
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.59 E-value=6.4e-15 Score=155.18 Aligned_cols=157 Identities=21% Similarity=0.189 Sum_probs=118.2
Q ss_pred eeeeeecccccccCC---ccccCCChhhhhhcCCccccceEEEEec---------------------------C------
Q psy11896 6 KIIHIKQEQVRGKDN---VGAVMDSMELERQRGITIQSAATYTLWK---------------------------D------ 49 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~---~~~~~d~~~~e~~~G~T~~~~~~~~~~~---------------------------~------ 49 (1043)
-++ |-.+.||++.. ..+..|..+.|.++|.|+......+.|. +
T Consensus 4 ~~~-g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (203)
T cd01888 4 GTI-GHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLV 82 (203)
T ss_pred EEE-CCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccc
Confidence 355 88999999983 2333788999999999998887666553 3
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-CchhHHHHHHHHHhcCC-CEEEEEecCCCCCCC-HHHHHHHH
Q psy11896 50 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-VQSQTLTVNRQMKRYDV-PCIAFINKLDRLGAD-PYRVINQM 126 (1043)
Q Consensus 50 ~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~-~~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~-~~~~~~~l 126 (1043)
.+++||||||+.+|...+..++..+|++++|+|++++ ...++...+..+...++ |+++|+||+|+.+.. ....++.+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i 162 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQI 162 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHH
Confidence 6899999999999999999999999999999999974 55666667666665665 689999999997522 22223344
Q ss_pred HHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 127 RQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++.+.. +.....+++++||++|.|+++|++.+...++
T Consensus 163 ~~~~~~----------~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 163 KKFVKG----------TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHhc----------cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 333211 1112346899999999999999999987665
No 176
>PLN03126 Elongation factor Tu; Provisional
Probab=99.59 E-value=7.3e-15 Score=172.06 Aligned_cols=150 Identities=24% Similarity=0.308 Sum_probs=120.9
Q ss_pred ceeeeeecccccccCCcc----------------ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNVG----------------AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~----------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||++..-+ ..+|..++|+++|+|++.....+++++.+++|||||||.+|...+.
T Consensus 84 i~ii-Ghvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~ 162 (478)
T PLN03126 84 IGTI-GHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 162 (478)
T ss_pred EEEE-CCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHH
Confidence 4556 8888888887322 3478899999999999999999999999999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+.+++..++.+++..+...++| +|+++||+|+.+ .++..+.+.+.+..++...++.. ..
T Consensus 163 ~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~--~~~~~~~i~~~i~~~l~~~g~~~----~~ 236 (478)
T PLN03126 163 TGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD--DEELLELVELEVRELLSSYEFPG----DD 236 (478)
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC--HHHHHHHHHHHHHHHHHhcCCCc----Cc
Confidence 999999999999999999999999999999999999 778999999975 23334444444444444433321 24
Q ss_pred eeeeeeeecccCCc
Q psy11896 148 IRNIGISAHIDSGK 161 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi 161 (1043)
.+++|+||.+|.++
T Consensus 237 ~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 237 IPIISGSALLALEA 250 (478)
T ss_pred ceEEEEEccccccc
Confidence 57899999998643
No 177
>KOG0092|consensus
Probab=99.58 E-value=5.3e-15 Score=145.53 Aligned_cols=158 Identities=16% Similarity=0.073 Sum_probs=113.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|++++ |++++||+|+.++++.|.|.+-.+|.+.--..+..+..++ .+|.||||+|+++|.+....|+|+|+++|+
T Consensus 5 ~~KvvLL-G~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 5 EFKVVLL-GDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred eEEEEEE-CCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 4788888 9999999999999999999986666555555555555555 688899999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHhcCCC---EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKRYDVP---CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~~~~p---iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|.|+++.-+.+....| ..+....-| +.+|.||+||...... ..++.... .....+ .++.+||
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V-~~~ea~~y----------Ae~~gl---l~~ETSA 149 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV-EFEEAQAY----------AESQGL---LFFETSA 149 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccc-cHHHHHHH----------HHhcCC---EEEEEec
Confidence 9999965444443332 223332224 5579999999752111 11111111 111122 3467999
Q ss_pred cccCCcchHHHHHHhhccc
Q psy11896 156 HIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~~ 174 (1043)
++|.|+++++..|...+++
T Consensus 150 KTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 150 KTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred ccccCHHHHHHHHHHhccC
Confidence 9999999999999988775
No 178
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.58 E-value=1.2e-14 Score=171.46 Aligned_cols=113 Identities=21% Similarity=0.298 Sum_probs=95.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC-
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD- 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d- 279 (1043)
+|+++|++|+|||||+|+|+.....+ .+...|+|.+.......|++..+++|||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~--------------------v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~ 60 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI--------------------VSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED 60 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce--------------------ecCCCCcccCceEEEEEECCeEEEEEECCCCCCc
Confidence 48999999999999999997432211 223568888888888899999999999999843
Q ss_pred -------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 280 -------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 -------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+...+..+++.+|++++|+|+..|.......+++.+.+.++|+++|+||+|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 61 DDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred chhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 344567788999999999999999999999999999889999999999999763
No 179
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.58 E-value=1e-14 Score=146.73 Aligned_cols=154 Identities=17% Similarity=0.115 Sum_probs=99.7
Q ss_pred CEEEEEEeCCCCCchhHHHHH-HHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVN-RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~-~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|++++|+|++++.......+. ..+...++|+++|+||+|+... +...+.+ ..+. ......++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~~~~~~-~~~~------------~~~~~~ii~v 65 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EVLRKWL-AYLR------------HSYPTIPFKI 65 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HHHHHHH-HHHH------------hhCCceEEEE
Confidence 789999999877666655554 4556678999999999999642 2111111 1110 0112467899
Q ss_pred eecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeec
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR 233 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~ 233 (1043)
||++|.|+++|.+.+.+...+..+..... .......+++++|++|+|||||+|+|+......
T Consensus 66 Sa~~~~gi~~L~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~------- 127 (155)
T cd01849 66 SATNGQGIEKKESAFTKQTNSNLKSYAKD-----------GKLKKSITVGVIGYPNVGKSSVINALLNKLKLK------- 127 (155)
T ss_pred eccCCcChhhHHHHHHHHhHHHHHHHHhc-----------cccccCcEEEEEccCCCCHHHHHHHHHcccccc-------
Confidence 99999999999998876543211000000 001134679999999999999999998432211
Q ss_pred CCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 234 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 234 ~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.+..+|+|.......+ +..++++||||.
T Consensus 128 -------------~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 128 -------------VGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred -------------ccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 2234567776655443 356999999994
No 180
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.58 E-value=1.8e-14 Score=145.34 Aligned_cols=153 Identities=18% Similarity=0.146 Sum_probs=102.8
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+...++.+|++|+|+|++++...++..+...+...++|+++|+||+|+.... .. ..+.....
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~-~~~~~~~~------------- 67 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKE--VL-EKWKSIKE------------- 67 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH--HH-HHHHHHHH-------------
Confidence 445667778999999999987766666666666666789999999999986421 11 11111100
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccC
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
....+++++||+++.|+++|++.+...++. .....+++++|.+|+|||||+++|.....
T Consensus 68 ~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~---------------------~~~~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 68 SEGIPVVYVSAKERLGTKILRRTIKELAKI---------------------DGKEGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred hCCCcEEEEEccccccHHHHHHHHHHHHhh---------------------cCCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 011357899999999999999999877641 11235689999999999999999973211
Q ss_pred CceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 225 RISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 225 ~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
. ......|+|...... ..+..+.+|||||.
T Consensus 127 ~--------------------~~~~~~~~t~~~~~~---~~~~~~~~~DtpGi 156 (156)
T cd01859 127 A--------------------STSPSPGYTKGEQLV---KITSKIYLLDTPGV 156 (156)
T ss_pred c--------------------ccCCCCCeeeeeEEE---EcCCCEEEEECcCC
Confidence 0 011233445443222 12447999999993
No 181
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.57 E-value=1e-14 Score=129.85 Aligned_cols=78 Identities=29% Similarity=0.550 Sum_probs=74.6
Q ss_pred EEEEeeee---cCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCc
Q psy11896 504 ALAFKLEA---GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGD 578 (1043)
Q Consensus 504 ~~V~K~~~---d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gd 578 (1043)
++|||+.+ +++ |+++|+|||||+|++||.|++...++++++.+|+.++|.+..+++++.||||+++.|+ ++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 57999999 998 9999999999999999999999888789999999999999999999999999999999 789999
Q ss_pred EEe
Q psy11896 579 TFV 581 (1043)
Q Consensus 579 tl~ 581 (1043)
||+
T Consensus 81 tl~ 83 (85)
T cd03689 81 TLT 83 (85)
T ss_pred Eee
Confidence 998
No 182
>CHL00071 tufA elongation factor Tu
Probab=99.57 E-value=7.9e-15 Score=170.58 Aligned_cols=150 Identities=24% Similarity=0.293 Sum_probs=119.5
Q ss_pred ceeeeeecccccccCCc----------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNV----------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~----------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-..+||+|..- ...+|..++|+++|+|++.....+++++.+++|+|||||.+|...+.
T Consensus 15 i~i~-Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~ 93 (409)
T CHL00071 15 IGTI-GHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMI 93 (409)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHH
Confidence 4455 778888876611 13578999999999999999988888899999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+..++..++.+++..+...++| +|+++||+|+.+. ++..+.+.+.+..++...++.. ..
T Consensus 94 ~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~--~~~~~~~~~~l~~~l~~~~~~~----~~ 167 (409)
T CHL00071 94 TGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD--EELLELVELEVRELLSKYDFPG----DD 167 (409)
T ss_pred HHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH--HHHHHHHHHHHHHHHHHhCCCC----Cc
Confidence 999999999999999999999999999999999999 7789999999742 3334444444444444333221 23
Q ss_pred eeeeeeeecccCCc
Q psy11896 148 IRNIGISAHIDSGK 161 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi 161 (1043)
.+++++||.+|.++
T Consensus 168 ~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 168 IPIVSGSALLALEA 181 (409)
T ss_pred ceEEEcchhhcccc
Confidence 57899999999764
No 183
>PLN03127 Elongation factor Tu; Provisional
Probab=99.57 E-value=1.1e-14 Score=169.87 Aligned_cols=162 Identities=23% Similarity=0.250 Sum_probs=120.6
Q ss_pred ceeeeeecccccccCCcc----------------ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNVG----------------AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~----------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||+|..-+ ..+|..++|+++|+|++.....+++++.+++|+|||||.+|...+.
T Consensus 64 i~ii-Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~ 142 (447)
T PLN03127 64 VGTI-GHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 142 (447)
T ss_pred EEEE-CcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHH
Confidence 4455 7777777776321 1589999999999999999999999899999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
..+..+|++++|+|+.+++..++.+++..+...++| +|+++||+|+.+ .++..+.+.+.+..++...++. ...
T Consensus 143 ~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~--~~~~~~~i~~~i~~~l~~~~~~----~~~ 216 (447)
T PLN03127 143 TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD--DEELLELVEMELRELLSFYKFP----GDE 216 (447)
T ss_pred HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC--HHHHHHHHHHHHHHHHHHhCCC----CCc
Confidence 999999999999999999999999999999999999 578999999974 2223333333333322221111 123
Q ss_pred eeeeeeeec---ccCC-------cchHHHHHHhhcc
Q psy11896 148 IRNIGISAH---IDSG-------KTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~---~g~G-------i~~L~~~l~~~l~ 173 (1043)
.+++++||. +|.| +..|++.+..+++
T Consensus 217 vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 217 IPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred ceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 466777775 5555 4566666665543
No 184
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.57 E-value=1.5e-14 Score=148.01 Aligned_cols=168 Identities=18% Similarity=0.146 Sum_probs=112.0
Q ss_pred CCCCc-chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 57 TPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 57 TPG~~-~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
-|||. +...++...++.||++++|+|++.+....+..+...+ .++|.++|+||+|+... .. .....+.+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~--~~-~~~~~~~~~---- 72 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADP--KK-TKKWLKYFE---- 72 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCCh--HH-HHHHHHHHH----
Confidence 47875 5778889999999999999999876655555444433 36899999999999632 11 111212111
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccH
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 215 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL 215 (1043)
....+++.+||+++.|+++|.+.+..+++... +.... .......+++++|.+|+|||||
T Consensus 73 ---------~~~~~vi~iSa~~~~gi~~L~~~l~~~l~~~~------~~~~~------~~~~~~~~~~~~G~~~vGKstl 131 (171)
T cd01856 73 ---------SKGEKVLFVNAKSGKGVKKLLKAAKKLLKDIE------KLKAK------GLLPRGIRAMVVGIPNVGKSTL 131 (171)
T ss_pred ---------hcCCeEEEEECCCcccHHHHHHHHHHHHHHHh------hhhhc------ccCCCCeEEEEECCCCCCHHHH
Confidence 01135789999999999999999988764311 00000 0111235799999999999999
Q ss_pred HhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 216 TERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 216 ~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+++|+..... ......|+|.......+. ..+.++||||.
T Consensus 132 in~l~~~~~~--------------------~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 132 INRLRGKKVA--------------------KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred HHHHhCCCce--------------------eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 9999843221 012234566665554442 56899999995
No 185
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=2.4e-14 Score=169.79 Aligned_cols=115 Identities=25% Similarity=0.359 Sum_probs=94.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.++|+|+|.+|+|||||+++|+..... ..+...|+|.+.......|++..+.+|||||+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~--------------------~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~ 97 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREA--------------------VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE 97 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcc--------------------cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence 478999999999999999999743211 123366888888778888999999999999976
Q ss_pred C--------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 D--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d--------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
. +...+..+++.+|++|+|+|+..+.......++..+...++|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 98 PDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred CcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 3 334456688999999999999999888777788888888999999999999753
No 186
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.57 E-value=1.3e-14 Score=129.41 Aligned_cols=80 Identities=48% Similarity=0.799 Sum_probs=76.4
Q ss_pred cEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcE
Q psy11896 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDT 579 (1043)
Q Consensus 502 ~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdt 579 (1043)
++++|||+.+|++ |+++|+|||+|+|++||.|++.++++++++.+|+.++|.+..++++++||||+++.|+ ++.+|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 5789999999997 9999999999999999999999888889999999999999999999999999999999 7899999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 81 l~ 82 (83)
T cd04088 81 LC 82 (83)
T ss_pred ee
Confidence 96
No 187
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.57 E-value=4.6e-14 Score=143.65 Aligned_cols=115 Identities=18% Similarity=0.161 Sum_probs=80.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
..++|+++|+.|+|||||++++.... .. .+....++.+.....+.+++ ..+++||||
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~--~~-------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 60 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGT--FS-------------------ERQGNTIGVDFTMKTLEIEGKRVKLQIWDTA 60 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--Cc-------------------ccCCCccceEEEEEEEEECCEEEEEEEEECC
Confidence 35899999999999999999996321 10 00011112222333455555 578999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH---hcCCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK---RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~~ 333 (1043)
|+.+|.......++.+|++++|+|+.+....+....|.. .. ..++|+++|+||+|+..
T Consensus 61 G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 61 GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred ChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 999998888888999999999999998654444333422 22 24689999999999863
No 188
>PRK12735 elongation factor Tu; Reviewed
Probab=99.57 E-value=1.6e-14 Score=167.37 Aligned_cols=149 Identities=23% Similarity=0.257 Sum_probs=115.0
Q ss_pred ceeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||++.. ..+.+|..++|+++|+|++.....+++++.+++|+|||||.+|...+.
T Consensus 15 i~ii-Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~ 93 (396)
T PRK12735 15 VGTI-GHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMI 93 (396)
T ss_pred EEEE-CcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHH
Confidence 4455 77788887771 224789999999999999998888888888999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+.+++..++.+++..+...++|.+ +++||+|+.+. ++..+.+...+..++...++. ...
T Consensus 94 ~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~--~~~~~~~~~ei~~~l~~~~~~----~~~ 167 (396)
T PRK12735 94 TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEMEVRELLSKYDFP----GDD 167 (396)
T ss_pred hhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcch--HHHHHHHHHHHHHHHHHcCCC----cCc
Confidence 99999999999999999999999999998888899965 67999999642 222333333333333322221 123
Q ss_pred eeeeeeeecccCC
Q psy11896 148 IRNIGISAHIDSG 160 (1043)
Q Consensus 148 ~~ii~iSa~~g~G 160 (1043)
.+++++||++|.+
T Consensus 168 ~~ii~~Sa~~g~n 180 (396)
T PRK12735 168 TPIIRGSALKALE 180 (396)
T ss_pred eeEEecchhcccc
Confidence 5789999999964
No 189
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.56 E-value=2.6e-14 Score=152.08 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=120.2
Q ss_pred cceeeeeecccccccCCccc--------------cCCChhhhhhcCCccccce------------------------EEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGA--------------VMDSMELERQRGITIQSAA------------------------TYT 45 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~--------------~~d~~~~e~~~G~T~~~~~------------------------~~~ 45 (1043)
|+.++ |+.++||+|...++ .+++.+.|.++|.|..... ..+
T Consensus 1 ~v~~~-G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVV-GNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEE-CCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 45667 99999999984433 3456678888898874333 223
Q ss_pred EecCeeEEEEeCCCCcchHHHHHHHhh--hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHH
Q psy11896 46 LWKDHNINIIDTPGHVDFTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRV 122 (1043)
Q Consensus 46 ~~~~~~i~liDTPG~~~~~~~~~~~~~--~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~ 122 (1043)
+..++.++|+|||||.+|...+..++. .+|++++|+|+..++..++..++.++...++|+++|+||+|+.+.+ ..+.
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~ 159 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQET 159 (224)
T ss_pred eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHH
Confidence 345678999999999999999888885 7999999999999999999999999999999999999999986432 3344
Q ss_pred HHHHHHhhhhcccccccc----------------C-CCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 123 INQMRQKTSRWISNESLS----------------E-HKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 123 ~~~l~~~~~~~~~~~~l~----------------~-~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
.+++.+.+.. .+.. . .......+++++||.+|+|+++|.+.|..
T Consensus 160 ~~~l~~~L~~----~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 160 LKDLKRILKV----PGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHhcC----CCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 4445444321 0100 0 01122458899999999999999987753
No 190
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.56 E-value=3.1e-14 Score=147.95 Aligned_cols=168 Identities=33% Similarity=0.372 Sum_probs=125.0
Q ss_pred ceeeeeecccccccCCccccC----------------CChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVM----------------DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~----------------d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |..++||+|...+... +....+..+|+|.+.....+.+.+..++||||||+.++...+.
T Consensus 2 v~v~-G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 2 VGIA-GHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred EEEE-eCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 3455 9999999998444322 2334577889999988888888889999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC-CCHHHHHHHHHHhhhhccccccc-cCCCCcc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQMRQKTSRWISNESL-SEHKPIE 146 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~-~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~ 146 (1043)
.+++.+|++++|+|+..+...+....+..+...++|+++|+||+|+.. .......+++++.+......... .......
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 999999999999999988777777777777778999999999999975 33334444444443211000000 0001123
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..+++++||++|.|++++++.+...++
T Consensus 161 ~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 161 LVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cceEEEEecccCcCHHHHHHHHHhhCC
Confidence 467899999999999999999987764
No 191
>PRK00049 elongation factor Tu; Reviewed
Probab=99.56 E-value=1.4e-14 Score=167.61 Aligned_cols=149 Identities=24% Similarity=0.257 Sum_probs=115.9
Q ss_pred ceeeeeecccccccCCc----------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDNV----------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~----------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||+|..- .+.+|+.++|+++|+|++.....+++++.+++|+|||||.+|...+.
T Consensus 15 i~ii-Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~ 93 (396)
T PRK00049 15 VGTI-GHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMI 93 (396)
T ss_pred EEEE-eECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHH
Confidence 4555 777888877621 12678999999999999999888888889999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|+..++..++.+++..+...++|.+ +++||+|+.+ .++..+.+...+...+...++. ...
T Consensus 94 ~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~--~~~~~~~~~~~i~~~l~~~~~~----~~~ 167 (396)
T PRK00049 94 TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD--DEELLELVEMEVRELLSKYDFP----GDD 167 (396)
T ss_pred hhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc--hHHHHHHHHHHHHHHHHhcCCC----ccC
Confidence 99999999999999999999999999999999999976 6899999974 2223333333333333332221 123
Q ss_pred eeeeeeeecccCC
Q psy11896 148 IRNIGISAHIDSG 160 (1043)
Q Consensus 148 ~~ii~iSa~~g~G 160 (1043)
.+++++||++|.+
T Consensus 168 ~~iv~iSa~~g~~ 180 (396)
T PRK00049 168 TPIIRGSALKALE 180 (396)
T ss_pred CcEEEeecccccC
Confidence 5789999999863
No 192
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.56 E-value=5.7e-14 Score=143.24 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=75.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
|+|+++|++|+|||||+++|+..... .+...+.|.........+++..+++|||||+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE---------------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc---------------------cCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 57999999999999999999743211 111234555555555667788999999999854
Q ss_pred chH--------HHHHHh-HhcCeEEEEEeCCCCcc---hHHHHHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 280 FTV--------EVERAL-RVLDGAILVLCAVGGVQ---SQTLTVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~--------e~~~~l-~~~D~~ilVvda~~g~~---~~t~~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
... ....++ ..+|++++|+|+.+... ......+..+... +.|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 60 RPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred ccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 211 112222 34689999999986432 1222334444444 789999999999863
No 193
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.56 E-value=2.5e-14 Score=165.94 Aligned_cols=154 Identities=23% Similarity=0.271 Sum_probs=117.2
Q ss_pred ceeeeeecccccccCC----------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHH
Q psy11896 5 VKIIHIKQEQVRGKDN----------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVE 68 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~----------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 68 (1043)
+.++ |-...||++.. ..+.+|..++|+++|+|++.....++.++.+++|||||||.+|...+.
T Consensus 15 i~i~-Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~ 93 (394)
T TIGR00485 15 IGTI-GHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMI 93 (394)
T ss_pred EEEE-eecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHH
Confidence 4455 77778887662 234789999999999999998888888888999999999999999999
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.++..+|++++|+|++.++..++.+++..+...++|.+ +++||+|+.+. ++..+.+.+.+..++...++. ...
T Consensus 94 ~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~~~~~i~~~l~~~~~~----~~~ 167 (394)
T TIGR00485 94 TGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEMEVRELLSEYDFP----GDD 167 (394)
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH--HHHHHHHHHHHHHHHHhcCCC----ccC
Confidence 99999999999999999999999999999988999965 68999998742 222333333333333322211 122
Q ss_pred eeeeeeeecccC-CcchHH
Q psy11896 148 IRNIGISAHIDS-GKTTLT 165 (1043)
Q Consensus 148 ~~ii~iSa~~g~-Gi~~L~ 165 (1043)
.+++++||++|. |..++.
T Consensus 168 ~~ii~vSa~~g~~g~~~~~ 186 (394)
T TIGR00485 168 TPIIRGSALKALEGDAEWE 186 (394)
T ss_pred ccEEECccccccccCCchh
Confidence 578999999985 544443
No 194
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.56 E-value=6.5e-14 Score=143.09 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=76.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe-eEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDtPG~~d 279 (1043)
+|+++|++|+|||||+++|......+ ....+.|+......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v---------------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI---------------------ADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc---------------------cCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 69999999999999999997432111 11233455555555666776 999999999743
Q ss_pred -------chHHHHHHhHhcCeEEEEEeCCCC-cchHHHHHH-HHHHh-----cCCCeEEEEeccCCCC
Q psy11896 280 -------FTVEVERALRVLDGAILVLCAVGG-VQSQTLTVN-RQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 -------f~~e~~~~l~~~D~~ilVvda~~g-~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
+.....+.++.+|++++|+|+... -..+....| ..+.. .+.|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 61 GASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred cccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 334455566779999999999976 233333333 22222 3689999999999853
No 195
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.56 E-value=1.4e-14 Score=151.78 Aligned_cols=152 Identities=17% Similarity=0.062 Sum_probs=112.6
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
++++ |+.++||||...++..+.+..+..+.++.+.....+.+++ .++.+|||+|+.+|...+..+++++|++|+|+|
T Consensus 3 vvvl-G~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 3 VIII-GSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEE-CcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 4555 9999999999999999999888777777777666677766 578999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHH-HHH---hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 83 AVGGVQSQTLTVNR-QMK---RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 83 a~~~~~~~~~~~~~-~l~---~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
+++.-+.+....|. .+. ..+.|+++|+||+|+..... ....+.+.+. .....++.+||+
T Consensus 82 vtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~---------------~~~~~~~etSAk 146 (202)
T cd04120 82 ITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ---------------ITGMRFCEASAK 146 (202)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHh---------------cCCCEEEEecCC
Confidence 99755444433332 222 23689999999999864211 1111111111 001246789999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.+...+
T Consensus 147 tg~gV~e~F~~l~~~~ 162 (202)
T cd04120 147 DNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988654
No 196
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.55 E-value=2e-14 Score=159.35 Aligned_cols=171 Identities=19% Similarity=0.190 Sum_probs=115.2
Q ss_pred CCCCc-chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 57 TPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 57 TPG~~-~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
-|||. +...++...+..+|++|+|+|++.+.......+...+. ++|+++|+||+|+.+. .. .+.+.+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~--~~-~~~~~~~~~---- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP--EV-TKKWIEYFE---- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH--HH-HHHHHHHHH----
Confidence 58987 46777889999999999999999877766665555443 7899999999998632 11 122222221
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccH
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 215 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL 215 (1043)
. . ..+++++||+++.|+++|.+.+...++...+...... ......+++++|.+|+|||||
T Consensus 78 ~------~---~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~-----------~~~~~~~~~~~G~pnvGKSsl 137 (287)
T PRK09563 78 E------Q---GIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKG-----------MRPRAIRAMIIGIPNVGKSTL 137 (287)
T ss_pred H------c---CCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcc-----------cCcCceEEEEECCCCCCHHHH
Confidence 0 0 1356889999999999999998877654221110000 011235799999999999999
Q ss_pred HhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 216 TERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 216 ~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
+|+|+..... ......|+|....... + +..+.|+||||...
T Consensus 138 iN~l~~~~~~--------------------~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~ 178 (287)
T PRK09563 138 INRLAGKKIA--------------------KTGNRPGVTKAQQWIK--L-GKGLELLDTPGILW 178 (287)
T ss_pred HHHHhcCCcc--------------------ccCCCCCeEEEEEEEE--e-CCcEEEEECCCcCC
Confidence 9999743211 0122567777765433 2 34689999999643
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.55 E-value=8.3e-14 Score=172.89 Aligned_cols=117 Identities=22% Similarity=0.361 Sum_probs=97.1
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
....++|+|+|++|+|||||+++|+.....+ .+...|+|.+.......|++..+++||||
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i--------------------v~~~pGvT~d~~~~~~~~~~~~~~liDT~ 331 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAV--------------------VEDTPGVTRDRVSYDAEWAGTDFKLVDTG 331 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCcee--------------------ecCCCCeeEEEEEEEEEECCEEEEEEeCC
Confidence 3446889999999999999999997432111 22356888888888888999999999999
Q ss_pred CCCC--------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 276 GHVD--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~d--------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|+.. |...+..+++.+|++|+|+|+.+|+......++..+...++|+++|+||+|+.
T Consensus 332 G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 332 GWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 9763 44556778899999999999999998888888888888999999999999975
No 198
>PRK00089 era GTPase Era; Reviewed
Probab=99.55 E-value=1e-13 Score=154.77 Aligned_cols=114 Identities=20% Similarity=0.208 Sum_probs=83.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
...|+++|++|+|||||+|+|+.....+ .....++|..........++.++.++||||+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~--------------------vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~ 64 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI--------------------VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIH 64 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee--------------------cCCCCCcccccEEEEEEcCCceEEEEECCCCC
Confidence 4569999999999999999998432211 01122333333333333456799999999976
Q ss_pred Cch--------HHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFT--------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~--------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.. ..+..++..+|++++|+|+..+.......++..+...+.|+++|+||+|+.
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 65 KPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred CchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 532 334567789999999999999777777777777777789999999999986
No 199
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.55 E-value=4e-14 Score=168.04 Aligned_cols=127 Identities=34% Similarity=0.536 Sum_probs=111.0
Q ss_pred cceeeeeecccccccCCc----------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCc
Q psy11896 4 KVKIIHIKQEQVRGKDNV----------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 61 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~----------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~ 61 (1043)
.+.|+ |-.++||||..- .+.+|+++.|+++|+|+......+.++++++++||||||.
T Consensus 12 ni~Ii-Gh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 12 TFAII-SHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 34455 888888887711 1347889999999999999999999999999999999999
Q ss_pred chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 62 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 62 ~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
+|...+..+++.+|++|+|+|+++++..++..+++.+...++|+++++||+|+...+..++++++++.++
T Consensus 91 df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~ 160 (526)
T PRK00741 91 DFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred hhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999998889999999999999988787777788877654
No 200
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=1.7e-14 Score=146.76 Aligned_cols=154 Identities=12% Similarity=0.029 Sum_probs=112.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |..++||+|...+...+.+..+..+..+.+.....+.+++ ..+.+|||||+.++...+...++.+|++++
T Consensus 3 ~~kv~vv-G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 3 LFKIILI-GDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4789999 9999999999888877777766666555566666666666 478999999999999989999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHH---hcCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMK---RYDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~---~~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+.+.... ...+. ..++|+++|+||+|+...... +....+.+. .....++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~---------------~~~~~~~e~ 146 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEK---------------NGMLAVLET 146 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH---------------cCCcEEEEE
Confidence 999987544333222 22222 246899999999998643211 111122211 112356889
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+...
T Consensus 147 Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 147 SAKESQNVEEAFLLMATE 164 (165)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999998754
No 201
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.55 E-value=3.8e-15 Score=147.20 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=110.7
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcch------HHHHHHHh--hhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF------TVEVERAL--RVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~------~~~~~~~~--~~aD 75 (1043)
++.++ |.+.+||++.+.+.+..+......||+|++...+.+.+++..+.|+||||..++ ...+..++ ...|
T Consensus 2 ~ialv-G~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 2 RIALV-GNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred EEEEE-CCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 45677 999999999988888888778888999999999999999999999999997532 12234444 5799
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
++++|+|++. ..++..+..++.+.++|+++++||+|...... .-..+.+.+.++ .+++++|
T Consensus 81 ~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg----------------~pvi~~s 142 (156)
T PF02421_consen 81 LIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG----------------VPVIPVS 142 (156)
T ss_dssp EEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT----------------S-EEEEB
T ss_pred EEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC----------------CCEEEEE
Confidence 9999999984 46677788888999999999999999753211 111345555442 4789999
Q ss_pred ecccCCcchHHHHH
Q psy11896 155 AHIDSGKTTLTERI 168 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l 168 (1043)
|++++|+++|++.+
T Consensus 143 a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 143 ARTGEGIDELKDAI 156 (156)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred eCCCcCHHHHHhhC
Confidence 99999999998865
No 202
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.55 E-value=4.2e-14 Score=142.47 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=80.9
Q ss_pred EEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchHH
Q psy11896 204 ISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 283 (1043)
Q Consensus 204 ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e 283 (1043)
++|++|+|||||++++..... .....+|+|+......+.+++..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~---------------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 59 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ---------------------KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPY 59 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc---------------------cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCC
Confidence 579999999999999963311 01224678888877778888899999999999887642
Q ss_pred ------HHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 284 ------VERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 284 ------~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
....+. .+|++++|+|+... .+....+.++...++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 60 SEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred ChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 233443 89999999999873 2333445566678999999999999864
No 203
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.54 E-value=8.2e-14 Score=147.54 Aligned_cols=94 Identities=50% Similarity=0.658 Sum_probs=85.7
Q ss_pred cccCCChhhhhhcCCccccceEEEEec----------CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhH
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWK----------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 91 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~----------~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~ 91 (1043)
.+++|+.+.|+++|+|++.....+.+. +++++|||||||.+|...+..+++.+|++++|+|+..++..++
T Consensus 35 ~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t 114 (222)
T cd01885 35 ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT 114 (222)
T ss_pred eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence 467899999999999999887666554 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEecCCCC
Q psy11896 92 LTVNRQMKRYDVPCIAFINKLDRL 115 (1043)
Q Consensus 92 ~~~~~~l~~~~~piilvlNKiDl~ 115 (1043)
..+++.+...++|+++|+||+|+.
T Consensus 115 ~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 115 ETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred HHHHHHHHHcCCCEEEEEECCCcc
Confidence 999998888889999999999985
No 204
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.54 E-value=3e-14 Score=147.88 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=114.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|+..++..+.+..+..+..+.+.....+..++ .++.||||||+.++...+..+++.+|++|+
T Consensus 6 ~~Kivvi-G~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 6 LLKFLLV-GDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 4788888 9999999999998888888777777777776656666666 578999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+|.++..+......| ..+.. .+.|+|||.||+|+...... ..++.+.... ... .+++.+||+
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v-~~~~~~~~a~----------~~~---~~~~e~SAk 150 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQV-ATEQAQAYAE----------RNG---MTFFEVSPL 150 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCC-CHHHHHHHHH----------HcC---CEEEEecCC
Confidence 9999875544443322 22322 36899999999998542110 0111111110 011 256789999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.++..+
T Consensus 151 ~g~~V~~~F~~l~~~i 166 (189)
T cd04121 151 CNFNITESFTELARIV 166 (189)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998644
No 205
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.54 E-value=3.7e-14 Score=155.51 Aligned_cols=149 Identities=34% Similarity=0.403 Sum_probs=123.8
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 99 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~ 99 (1043)
.--.++|+...|+++|+|+-.+...+.|++++++++|||||.+|..++.+.+.-.|++++++||.+|+.+|+..+.+.+.
T Consensus 38 v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl 117 (603)
T COG1217 38 VAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKAL 117 (603)
T ss_pred hhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccC----------CcchHHHHHH
Q psy11896 100 RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDS----------GKTTLTERIL 169 (1043)
Q Consensus 100 ~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~----------Gi~~L~~~l~ 169 (1043)
+.+.+-|+|+||+|.+++.+++..++.-..|-. +......-.++++.-||+.|. ++..|++.+.
T Consensus 118 ~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~------L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~ 191 (603)
T COG1217 118 ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVE------LGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETIL 191 (603)
T ss_pred HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH------hCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHH
Confidence 899999999999999999888777766554321 222222223477888998874 3566777777
Q ss_pred hhccc
Q psy11896 170 FYTGR 174 (1043)
Q Consensus 170 ~~l~~ 174 (1043)
.+.+.
T Consensus 192 ~hvp~ 196 (603)
T COG1217 192 DHVPA 196 (603)
T ss_pred HhCCC
Confidence 77663
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.54 E-value=4.7e-14 Score=163.74 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=119.7
Q ss_pred ccceeeeeecccccccCCcc---ccCCChhhhhhcCCccccceEEEEec--------------------------CeeEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG---AVMDSMELERQRGITIQSAATYTLWK--------------------------DHNIN 53 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~---~~~d~~~~e~~~G~T~~~~~~~~~~~--------------------------~~~i~ 53 (1043)
+++.++ |..+.||+|..-+ ..+|..++|+++|+|++..+..+.+. ..+++
T Consensus 10 ~ni~v~-Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 10 VNIGMV-GHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred EEEEEE-ccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 346666 9999999988422 23689999999999999875443321 25799
Q ss_pred EEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCCH-HHHHHHHHHhh
Q psy11896 54 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKT 130 (1043)
Q Consensus 54 liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~-~~~~~~l~~~~ 130 (1043)
|||||||.+|...+...+..+|++++|+|++.+. ..++..++..+...++ |+++|+||+|+.+.+. ....+.+.+.+
T Consensus 89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l 168 (411)
T PRK04000 89 FVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFV 168 (411)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999876 6777777777777775 5899999999975322 11223333322
Q ss_pred hhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 131 SRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
. . ......+++++||++|.|+++|++.+...++
T Consensus 169 ~----~------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 169 K----G------TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred c----c------ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 1 0 1112357899999999999999999987654
No 207
>KOG0094|consensus
Probab=99.54 E-value=1.9e-14 Score=141.26 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=119.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||++.+ |++++||||.+..+.-|.+....++.+.+|.....+.+.+. .+.+|||+|+++|...+.+|++++.++|+|
T Consensus 23 ~KlVfl-GdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV 101 (221)
T KOG0094|consen 23 YKLVFL-GDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 101 (221)
T ss_pred EEEEEE-ccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence 888888 99999999999999999999999998888888777777665 799999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHH--HHHHhcC---CCEEEEEecCCCCCCCHHHHHH--HHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLTVN--RQMKRYD---VPCIAFINKLDRLGADPYRVIN--QMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~--~~l~~~~---~piilvlNKiDl~~~~~~~~~~--~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|.++.-+......| ....+.+ +-+++|.||.||.+...-...+ ...+. ... ..+.+
T Consensus 102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAke-------------l~a---~f~et 165 (221)
T KOG0094|consen 102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKE-------------LNA---EFIET 165 (221)
T ss_pred EeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHH-------------hCc---EEEEe
Confidence 999875544333322 2233333 3367899999997642111111 11111 122 34669
Q ss_pred eecccCCcchHHHHHHhhcccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGRI 175 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~ 175 (1043)
||+.|.|+..|+..++..++..
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCc
Confidence 9999999999999998887754
No 208
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.54 E-value=9.3e-14 Score=140.18 Aligned_cols=109 Identities=19% Similarity=0.151 Sum_probs=78.6
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|+.|+|||||+++++... .. ....|+......+.+++..+.+|||||+..|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VV----------------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CC----------------------CCCCCcCcceEEEEECCEEEEEEECCCChhh
Confidence 58999999999999999997432 00 0011222223445667889999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHH----HHHHhcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGV-QSQTLTVN----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.......++.+|++++|+|+...- .......+ ..+...+.|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 57 RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 888888889999999999999752 11122222 222235789999999999874
No 209
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.54 E-value=2.7e-14 Score=148.01 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=106.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe---cCeeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW---KDHNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...+.+..+ .|.++.+.....+.. .+..+.+|||||+.++...+..+++.+|+++
T Consensus 3 ~~kv~~v-G~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 3 SLHIVML-GLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 5788888 9999999999888777665533 343333333333322 3568999999999999999999999999999
Q ss_pred EEEeCCCCCchhHH-----HHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 79 LVLCAVGGVQSQTL-----TVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-----~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+|+++.-..... .+.......++|+++|+||+|+...... +.+...+. +.........+++++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~ 150 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV---SEVEKLLA-------LHELSASTPWHVQPA 150 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH---HHHHHHhC-------ccccCCCCceEEEEe
Confidence 99999864222111 1222223357899999999998643211 11221111 000011112457899
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+-
T Consensus 151 SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 151 CAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999987664
No 210
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.54 E-value=7.8e-14 Score=143.18 Aligned_cols=111 Identities=18% Similarity=0.175 Sum_probs=77.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|.... ... .++..|. ....+.+++..+++|||||+.
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~--~~~------------------~~~t~g~----~~~~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGED--IDT------------------ISPTLGF----QIKTLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CCC------------------cCCcccc----ceEEEEECCEEEEEEECCCCH
Confidence 3679999999999999999997331 100 0111222 222345567899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHH----HhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~----~~~~~p~ivviNKiD~~~ 333 (1043)
.|.......++.+|++++|+|+.+.-... ....+... ...+.|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 70 TLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 98888888899999999999998752211 11112211 235789999999999864
No 211
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.53 E-value=5.9e-14 Score=141.63 Aligned_cols=100 Identities=22% Similarity=0.156 Sum_probs=69.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC--
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH-- 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~-- 277 (1043)
++|+++|++|+|||||+++|...... . . ......|... ++|||||.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~----------------------~---~-----~~~~v~~~~~--~~iDtpG~~~ 49 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL----------------------A---R-----KTQAVEFNDK--GDIDTPGEYF 49 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc----------------------C---c-----cceEEEECCC--CcccCCcccc
Confidence 47999999999999999998622100 0 0 1111223222 37999996
Q ss_pred --CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 278 --VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 --~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.++..++..+++.+|++++|+|+.++....+..++.. ..+.|+++++||+|+..
T Consensus 50 ~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 50 SHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD 105 (158)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc
Confidence 4566667777899999999999998765544433332 34679999999999864
No 212
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.53 E-value=5e-14 Score=141.61 Aligned_cols=144 Identities=18% Similarity=0.194 Sum_probs=112.1
Q ss_pred eecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH--------HHHHHHhhhcCEEEEE
Q psy11896 10 IKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT--------VEVERALRVLDGAILV 80 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~--------~~~~~~~~~aD~iIlV 80 (1043)
|..++||+|...+....+ ...+..+++|++.......+.+..+.+|||||+.++. ..+...++.+|++++|
T Consensus 4 G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v 83 (157)
T cd01894 4 GRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFV 83 (157)
T ss_pred CCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEE
Confidence 899999999966655543 2355678999999888888889999999999998743 3556778999999999
Q ss_pred EeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 81 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+|++.+....+..+..++...++|+++|+||+|+...... ...+. .....+++++|+++|.|
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~----------------~~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 84 VDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEFY----------------SLGFGEPIPISAEHGRG 145 (157)
T ss_pred EeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHHH----------------hcCCCCeEEEecccCCC
Confidence 9998877777777778888888999999999999753321 11111 11123568999999999
Q ss_pred cchHHHHHHhh
Q psy11896 161 KTTLTERILFY 171 (1043)
Q Consensus 161 i~~L~~~l~~~ 171 (1043)
++++++.+.+.
T Consensus 146 v~~l~~~l~~~ 156 (157)
T cd01894 146 IGDLLDAILEL 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.53 E-value=5.9e-14 Score=163.14 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=120.1
Q ss_pred ccceeeeeecccccccCCccc---cCCChhhhhhcCCccccceEEEEe--------------------------cCeeEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGA---VMDSMELERQRGITIQSAATYTLW--------------------------KDHNIN 53 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~---~~d~~~~e~~~G~T~~~~~~~~~~--------------------------~~~~i~ 53 (1043)
+++.++ |...+||++..-+. .+|..++|+++|+|++..+..+.+ .+..++
T Consensus 5 ~~i~ii-G~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 5 VNIGMV-GHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred EEEEEE-ccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 456666 99999999984332 268889999999999887544321 135799
Q ss_pred EEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCCH-HHHHHHHHHhh
Q psy11896 54 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKT 130 (1043)
Q Consensus 54 liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~-~~~~~~l~~~~ 130 (1043)
|||||||.+|...+..++..+|++++|+|++++. ..++.+++..+...++ |+++++||+|+.+.+. ....+++.+.+
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l 163 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFV 163 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999887 7788888777777765 5899999999975322 11223333322
Q ss_pred hhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 131 SRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
. . ......+++++||++|.|+++|++.+...++
T Consensus 164 ~----~------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 164 K----G------TVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred h----h------cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 1 1 0112346899999999999999999987654
No 214
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.53 E-value=6.9e-14 Score=138.35 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=94.2
Q ss_pred HHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccC
Q psy11896 64 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 64 ~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
...+...++.+|++++|+|++++...++..+.+++... ++|+++|+||+|+... .. ...+.+.+. .
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~--~~-~~~~~~~~~----~----- 69 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE--EQ-RKAWAEYFK----K----- 69 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH--HH-HHHHHHHHH----h-----
Confidence 35677899999999999999988877777777777665 8999999999998632 11 222222221 0
Q ss_pred CCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhc
Q psy11896 142 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 221 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~ 221 (1043)
. ..+++++||+++.+ +++++|.+|+|||||+|+|+.
T Consensus 70 ---~-~~~ii~iSa~~~~~----------------------------------------~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 70 ---E-GIVVVFFSALKENA----------------------------------------TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred ---c-CCeEEEEEecCCCc----------------------------------------EEEEECCCCCCHHHHHHHHhC
Confidence 0 13578899998764 489999999999999999974
Q ss_pred ccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 222 YTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 222 ~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.... . .....|.|.+.....+ ++ .+.+|||||..
T Consensus 106 ~~~~--~------------------~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~ 139 (141)
T cd01857 106 KKKV--S------------------VSATPGKTKHFQTIFL--TP-TITLCDCPGLV 139 (141)
T ss_pred CCce--e------------------eCCCCCcccceEEEEe--CC-CEEEEECCCcC
Confidence 3211 0 1113344544433332 22 68999999963
No 215
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=4.4e-14 Score=148.81 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=111.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
||+.++ |+.++||+|+..+++.+.+.....|.+..+.....+.++ ...+.||||||+.++...+..+++.+|++|+
T Consensus 1 ~Kiviv-G~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~il 79 (201)
T cd04107 1 LKVLVI-GDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAII 79 (201)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEE
Confidence 688888 999999999988888887776666666555555555554 3578999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHH-HHH-------hcCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 80 VLCAVGGVQSQTLTVNR-QMK-------RYDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~-~l~-------~~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
|+|+++..+......|. .+. ..++|+++|+||+|+.+. ...+....+.+. ..+.+
T Consensus 80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~---------------~~~~~ 144 (201)
T cd04107 80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE---------------NGFIG 144 (201)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH---------------cCCce
Confidence 99998654433332221 121 246799999999999631 111112222211 11235
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++.+||++|.|++++++.+...+-
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987654
No 216
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.53 E-value=1.1e-13 Score=139.99 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=78.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+++|......... ..+..|.+ ...+.+++..+++|||||+.+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~------------------~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~ 58 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI------------------IVPTVGFN----VESFEKGNLSFTAFDMSGQGKY 58 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce------------------ecCccccc----eEEEEECCEEEEEEECCCCHhh
Confidence 5899999999999999999743211100 01112222 2234567889999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHH-HHHHHHH------HhcCCCeEEEEeccCCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQM------KRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t-~~~~~~~------~~~~~p~ivviNKiD~~~~ 334 (1043)
...+..+++.+|++|+|+|+.+...... ...+..+ ...++|+++|+||+|+...
T Consensus 59 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 59 RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9988999999999999999987543211 1112211 1247899999999998643
No 217
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.52 E-value=3.8e-12 Score=153.24 Aligned_cols=166 Identities=23% Similarity=0.213 Sum_probs=109.2
Q ss_pred eeeeeecccccccCCccccCCChhhhhhc-CCccccceEEEEec------C-------e-----eEEEEeCCCCcchHHH
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSMELERQR-GITIQSAATYTLWK------D-------H-----NINIIDTPGHVDFTVE 66 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~~e~~~-G~T~~~~~~~~~~~------~-------~-----~i~liDTPG~~~~~~~ 66 (1043)
+.+.|..++||||...+.. .++-...++ |+|.+.....+.+. + . .++|||||||.+|...
T Consensus 9 V~i~Gh~~~GKTSLl~~l~-~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 87 (586)
T PRK04004 9 VVVLGHVDHGKTTLLDKIR-GTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNL 87 (586)
T ss_pred EEEECCCCCCHHHHHHHHh-CcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHH
Confidence 3344999999999855543 333333343 45544433222211 0 1 2799999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC-CCH--------------HHHHHHHHH---
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADP--------------YRVINQMRQ--- 128 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~-~~~--------------~~~~~~l~~--- 128 (1043)
+..+++.+|++++|+|+++++..++...+..+...++|+++++||+|+.. +.. ....+.+.+
T Consensus 88 ~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ 167 (586)
T PRK04004 88 RKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLY 167 (586)
T ss_pred HHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888999999999999852 110 111111111
Q ss_pred hhhhccccccccCC------CCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 129 KTSRWISNESLSEH------KPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 129 ~~~~~~~~~~l~~~------~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+...+...++... ......+++|+||++|.|+++|++.+....
T Consensus 168 ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 168 ELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 11111222222211 112346789999999999999998876544
No 218
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.52 E-value=1.4e-13 Score=139.04 Aligned_cols=110 Identities=19% Similarity=0.124 Sum_probs=77.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++++|||||+++|..... .++ .. |+......+.+.+..+++|||||+.+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-----------------~~~---~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 56 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-----------------VTT---IP----TIGFNVETVTYKNLKFQVWDLGGQTSI 56 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-----------------cCc---CC----ccCcCeEEEEECCEEEEEEECCCCHHH
Confidence 589999999999999999953210 000 00 111122345567889999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHH-HHH---hcCCCeEEEEeccCCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNR-QMK---RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~-~~~---~~~~p~ivviNKiD~~~~ 334 (1043)
......+++.+|++++|+|+.+..... ....+. ... ..++|+++|+||+|+.+.
T Consensus 57 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 57 RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 888888899999999999998642211 122222 222 247899999999998643
No 219
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.52 E-value=7.7e-14 Score=142.46 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=105.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |.+++||||...+...+.+. ...|.++.+ ...+...+.++.+|||||+.++...+..+++.+|++|+|+
T Consensus 9 ~~kv~i~-G~~~~GKTsli~~l~~~~~~-~~~~t~g~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 9 EMRILML-GLDAAGKTTILYKLKLGQSV-TTIPTVGFN--VETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred ccEEEEE-CcCCCCHHHHHHHHccCCCc-cccCCcccc--eEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4688888 99999999998777665543 334544433 3355567889999999999999998999999999999999
Q ss_pred eCCCCCchh--HHHHHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQ--TLTVNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~--~~~~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..... ...+...+. ..++|+++|+||+|+.+.... +++++.++ +..... ...+++++||+
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~-------~~~~~~-~~~~~~~~SAk 153 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKP---HEIQEKLG-------LTRIRD-RNWYVQPSCAT 153 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCH---HHHHHHcC-------CCccCC-CcEEEEEeeCC
Confidence 998643221 122222222 136899999999998643211 23333221 111111 12357899999
Q ss_pred ccCCcchHHHHHHh
Q psy11896 157 IDSGKTTLTERILF 170 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~ 170 (1043)
+|.|+++++++|.+
T Consensus 154 ~g~gv~~~~~~l~~ 167 (168)
T cd04149 154 SGDGLYEGLTWLSS 167 (168)
T ss_pred CCCChHHHHHHHhc
Confidence 99999999988753
No 220
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=9.4e-14 Score=164.94 Aligned_cols=128 Identities=30% Similarity=0.489 Sum_probs=111.7
Q ss_pred cceeeeeecccccccCC----------------------ccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCc
Q psy11896 4 KVKIIHIKQEQVRGKDN----------------------VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 61 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~----------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~ 61 (1043)
.+.|+ |-.+.||||.. ..+++|+.+.|+++|+|+......+++++++++|||||||.
T Consensus 13 niaii-Gh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~ 91 (527)
T TIGR00503 13 TFAII-SHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHE 91 (527)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChh
Confidence 34455 78888887661 12678999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 62 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 62 ~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
+|...+..+++.+|++|+|+|+..++..++..+++.+...++|+++++||+|+...+..++++.++..++.
T Consensus 92 df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 92 DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999989999998888889999999999999877887888888877653
No 221
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.51 E-value=6.8e-14 Score=144.62 Aligned_cols=156 Identities=12% Similarity=0.042 Sum_probs=108.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |++++|||+.......+.+. +..|. +......++..+..+.+|||||+.++...+..+++++|++|+|+
T Consensus 17 ~~ki~iv-G~~~~GKTsl~~~l~~~~~~-~~~pt--~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 17 EMRILMV-GLDAAGKTTILYKLKLGEIV-TTIPT--IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred ccEEEEE-CCCCCCHHHHHHHHccCCCc-cccCC--cceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4688888 99999999998777665554 33343 33444556777889999999999999999999999999999999
Q ss_pred eCCCCCchhH--HHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT--LTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~--~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ..+...+.. .++|+++|+||+|+.+.... +++.+.++ +.... .....++++||+
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~l~-------l~~~~-~~~~~~~~~Sa~ 161 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA---AEITDKLG-------LHSLR-QRHWYIQSTCAT 161 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH---HHHHHHhC-------ccccC-CCceEEEeccCC
Confidence 9986432211 122222221 36899999999999754321 33443332 11100 112245689999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|+|++++++.+...+
T Consensus 162 ~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 162 SGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987554
No 222
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.51 E-value=1.4e-13 Score=139.47 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=78.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++++...-.. . .....+.++......+..+...+++|||||+..|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP--------Q-----------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--------C-----------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 68999999999999999997321100 0 0011122222222333344568899999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
......+++.+|++++|+|+.+....+....| ....+ .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 63 QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 99889999999999999999876554444333 33333 268999999999974
No 223
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.51 E-value=1.1e-13 Score=140.13 Aligned_cols=152 Identities=11% Similarity=0.027 Sum_probs=103.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
|+.++ |..++||||...+.....+. +..|.+ ......+...+.++.+|||||+.++...+..+++++|++|+|+|+
T Consensus 2 kv~~~-G~~~~GKTsli~~l~~~~~~-~~~pt~--g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 2 RILMV-GLDAAGKTTILYKLKLGEIV-TTIPTI--GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred EEEEE-CCCCCCHHHHHHHHhcCCCc-ccCCCC--CcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 77788 99999999998877666654 344433 333445666788999999999999999999999999999999999
Q ss_pred CCCCchh-HHHHHH-HHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGGVQSQ-TLTVNR-QMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~~~~~-~~~~~~-~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
++..... ....+. .+.. .+.|+++++||+|+.+.... +++.+.+. +.... .....++++||++|
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~-------~~~~~-~~~~~~~~~Sak~g 146 (159)
T cd04150 78 NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA---AEVTDKLG-------LHSLR-NRNWYIQATCATSG 146 (159)
T ss_pred CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH---HHHHHHhC-------ccccC-CCCEEEEEeeCCCC
Confidence 8532211 122222 2221 35899999999999653221 22222221 11101 11235688999999
Q ss_pred CCcchHHHHHHh
Q psy11896 159 SGKTTLTERILF 170 (1043)
Q Consensus 159 ~Gi~~L~~~l~~ 170 (1043)
.|++++++++.+
T Consensus 147 ~gv~~~~~~l~~ 158 (159)
T cd04150 147 DGLYEGLDWLSN 158 (159)
T ss_pred CCHHHHHHHHhc
Confidence 999999998764
No 224
>PRK04213 GTP-binding protein; Provisional
Probab=99.51 E-value=2.2e-13 Score=143.51 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=76.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|++|+|||||+++|..... ..+..+|+|..... +.++ .+++|||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~---------------------~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~ 62 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV---------------------RVGKRPGVTRKPNH--YDWG--DFILTDLPGF 62 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---------------------ccCCCCceeeCceE--Eeec--ceEEEeCCcc
Confidence 346899999999999999999963210 11234466665433 3343 6899999995
Q ss_pred CC-----------chHHHHH----HhHhcCeEEEEEeCCCC-----------cchHHHHHHHHHHhcCCCeEEEEeccCC
Q psy11896 278 VD-----------FTVEVER----ALRVLDGAILVLCAVGG-----------VQSQTLTVNRQMKRYDVPCIAFINKLDR 331 (1043)
Q Consensus 278 ~d-----------f~~e~~~----~l~~~D~~ilVvda~~g-----------~~~~t~~~~~~~~~~~~p~ivviNKiD~ 331 (1043)
.. |...+.. ++..+|++++|+|+... ....+..++..+...++|+++|+||+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl 142 (201)
T PRK04213 63 GFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDK 142 (201)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 32 2222222 34457899999999642 2234566677777789999999999998
Q ss_pred CCC
Q psy11896 332 LGA 334 (1043)
Q Consensus 332 ~~~ 334 (1043)
...
T Consensus 143 ~~~ 145 (201)
T PRK04213 143 IKN 145 (201)
T ss_pred cCc
Confidence 643
No 225
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.51 E-value=6e-14 Score=141.32 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=107.2
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH------HHHHHhh--hcCEEEEEE
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV------EVERALR--VLDGAILVL 81 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~------~~~~~~~--~aD~iIlVv 81 (1043)
|..++||+|+..............+|+|++.....+++++.++.+|||||+.++.. .+..++. .+|++++|+
T Consensus 3 G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 82 (158)
T cd01879 3 GNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVV 82 (158)
T ss_pred CCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEe
Confidence 88999999997666655556667899999999888999889999999999986543 2344554 899999999
Q ss_pred eCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 82 Da~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
|++.. ......+..+...++|+++|+||+|+.+... ....+.+...+ ..+++++||.+|.|
T Consensus 83 d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~iSa~~~~~ 144 (158)
T cd01879 83 DATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELL----------------GVPVVPTSARKGEG 144 (158)
T ss_pred eCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhh----------------CCCeEEEEccCCCC
Confidence 99863 2333444556667899999999999965321 11112222111 13678999999999
Q ss_pred cchHHHHHHhhc
Q psy11896 161 KTTLTERILFYT 172 (1043)
Q Consensus 161 i~~L~~~l~~~l 172 (1043)
++++++.+....
T Consensus 145 ~~~l~~~l~~~~ 156 (158)
T cd01879 145 IDELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 226
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=3.1e-13 Score=151.83 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=87.2
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNIN 270 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~ 270 (1043)
...+..-+..|+++|.+|||||||+++|+.....+ ....++|+......+.+ ++..+.
T Consensus 151 ~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~v---------------------a~ypfTT~~p~~G~v~~~~~~~~~ 209 (335)
T PRK12299 151 LRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKI---------------------ADYPFTTLHPNLGVVRVDDYKSFV 209 (335)
T ss_pred EEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCcc---------------------CCCCCceeCceEEEEEeCCCcEEE
Confidence 34445557789999999999999999997543222 12456788888877887 557899
Q ss_pred EEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh-----cCCCeEEEEeccCCCC
Q psy11896 271 IIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 271 liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
++||||..+ +.....+.+..+|++++|+|+.+.-..+....| ..+.. .++|+++|+||+|+..
T Consensus 210 i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 210 IADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred EEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 999999754 344566777889999999999854323333333 33332 3689999999999864
No 227
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.50 E-value=7.7e-14 Score=141.29 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=108.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec----CeeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~----~~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.|+.++ |++++||+|...+...+.+..+..|.++.+.....+.++ ..++.+|||||+.++...+..+++.+|+++
T Consensus 1 ~kv~~v-G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v 79 (162)
T cd04106 1 IKVIVV-GNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACI 79 (162)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEE
Confidence 478888 999999999988888877776666666665544444444 457999999999999999999999999999
Q ss_pred EEEeCCCCCchhHHHHHH-HHH--hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 79 LVLCAVGGVQSQTLTVNR-QMK--RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~~~-~l~--~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+|+++..+......|. .+. ..++|+++|+||+|+..... .+....+.+.+ . .+++++
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~~~ 143 (162)
T cd04106 80 LVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRL-------------Q---LPLFRT 143 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHc-------------C---CeEEEE
Confidence 999998644333322222 122 23789999999999864221 11112222211 1 257889
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.+..
T Consensus 144 Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 144 SVKDDFNVTELFEYLAE 160 (162)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999998864
No 228
>KOG1145|consensus
Probab=99.50 E-value=1e-13 Score=154.96 Aligned_cols=146 Identities=29% Similarity=0.382 Sum_probs=119.1
Q ss_pred ccCCccccCCChh-----hhhhcCCccccceEEEEe-cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchh
Q psy11896 17 GKDNVGAVMDSME-----LERQRGITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ 90 (1043)
Q Consensus 17 ~s~~~~~~~d~~~-----~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~ 90 (1043)
-...++|++|++. .-..-|+|.+...+.+.. +|..++|+|||||..|..+..+....+|++++|+.+.+|+.+|
T Consensus 162 VDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQ 241 (683)
T KOG1145|consen 162 VDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQ 241 (683)
T ss_pred ccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHh
Confidence 3333444455554 334558999988877776 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 91 TLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 91 ~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
+.+.+..++..++|+|+++||+|.+.+++++.+.++... ++....--...+++||||++|+|++.|.+.+.-
T Consensus 242 T~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~--------gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 242 TLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ--------GIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc--------CccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 999999999999999999999999999999888777553 222222234568999999999999999888763
No 229
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.50 E-value=1.2e-13 Score=139.37 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=104.5
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
|+.++ |..++||++...+...+.+.. ..| |+......++..+.++.+|||||+.++...+..+++.+|++|+|+|+
T Consensus 1 kv~lv-G~~~~GKTsl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILIL-GLDNAGKTTILYRLQLGEVVT-TIP--TIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEE-CCCCCCHHHHHHHHccCCCcC-cCC--ccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 56777 999999999987776555432 233 43444455666788999999999999999999999999999999999
Q ss_pred CCCCchh--HHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGGVQSQ--TLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~~~~~--~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
++..... ...+...+.. .++|+++|+||+|+.+.... .++...+. ... ......+++++||++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~---~~i~~~~~-------~~~-~~~~~~~~~~~Sa~~~ 145 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE---AEISEKLG-------LSE-LKDRTWSIFKTSAIKG 145 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH---HHHHHHhC-------ccc-cCCCcEEEEEeeccCC
Confidence 8642211 1222222222 37899999999999754311 22222221 000 0111246899999999
Q ss_pred CCcchHHHHHHh
Q psy11896 159 SGKTTLTERILF 170 (1043)
Q Consensus 159 ~Gi~~L~~~l~~ 170 (1043)
.|++++++.+..
T Consensus 146 ~gi~~l~~~l~~ 157 (158)
T cd04151 146 EGLDEGMDWLVN 157 (158)
T ss_pred CCHHHHHHHHhc
Confidence 999999998863
No 230
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.50 E-value=1e-13 Score=141.71 Aligned_cols=156 Identities=14% Similarity=0.004 Sum_probs=105.8
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
|+.++ |..++||||...+...+.+. + +..|+......++..+.++.+|||||+.++...+..+++.+|++++|+|+
T Consensus 1 ~vvlv-G~~~~GKTsl~~~l~~~~~~-~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTL-GLDGAGKTTILFKLKQDEFM-Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEE-CCCCCCHHHHHHHHhcCCCC-C--cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 56677 99999999998777766543 2 33455555566777888999999999999999999999999999999999
Q ss_pred CCCCchhH--HHHHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGGVQSQT--LTVNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~~~~~~--~~~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
++...... ..+...+. ..+.|+++|+||+|+...... +++.+.+. +..........++++||++|
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~g 146 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV---EEMTELLS-------LHKLCCGRSWYIQGCDARSG 146 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH---HHHHHHhC-------CccccCCCcEEEEeCcCCCC
Confidence 86422211 12222222 134799999999999643221 22222111 00000011235678999999
Q ss_pred CCcchHHHHHHhhcc
Q psy11896 159 SGKTTLTERILFYTG 173 (1043)
Q Consensus 159 ~Gi~~L~~~l~~~l~ 173 (1043)
.|++++++.+...+.
T Consensus 147 ~gv~~~f~~l~~~~~ 161 (169)
T cd04158 147 MGLYEGLDWLSRQLV 161 (169)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999876543
No 231
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.50 E-value=2.2e-13 Score=139.04 Aligned_cols=115 Identities=20% Similarity=0.150 Sum_probs=81.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
...++|+++|+.|+|||||+++|+... .. ......++.......+.+.+ ..+.+|||
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~--~~-------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~ 63 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGL--FP-------------------PGQGATIGVDFMIKTVEIKGEKIKLQIWDT 63 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCC--CC-------------------CCCCCceeeEEEEEEEEECCEEEEEEEEEC
Confidence 456899999999999999999996321 10 00111122233333455555 45788999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH----HHHHhcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~----~~~~~~~~p~ivviNKiD~~ 332 (1043)
||+.+|.......++.+|++++|+|+.++...+....| +.....++|.++|.||+|+.
T Consensus 64 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 64 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999889999999999999999876444333333 22223468999999999975
No 232
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.50 E-value=1.3e-13 Score=140.60 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=104.4
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcch--------HHHHHHHh-hhc
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF--------TVEVERAL-RVL 74 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~--------~~~~~~~~-~~a 74 (1043)
++.++ |.+++||+|...+...+....+..+++|.+.....+.+++.+++||||||+.+. .......+ ..+
T Consensus 2 ~i~~~-G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIA-GYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEE-cCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 35556 999999999988888777766667888988888888888899999999998421 11112222 336
Q ss_pred CEEEEEEeCCCCCc---hhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 75 DGAILVLCAVGGVQ---SQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 75 D~iIlVvDa~~~~~---~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
|++|+|+|+++... ......+..+... ++|+++|+||+|+...... ....+.. .....+
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~---~~~~~~~-------------~~~~~~ 144 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDL---SEIEEEE-------------ELEGEE 144 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhH---HHHHHhh-------------hhccCc
Confidence 89999999986432 1222334445444 7899999999999653221 1111110 112246
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++++||++|.|++++++.+...
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 145 VLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred eEEEEecccCCHHHHHHHHHHH
Confidence 7899999999999999988754
No 233
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.50 E-value=2.1e-13 Score=141.36 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=76.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEE-EecCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYT-LWKDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~~~~i~liDtPG~~ 278 (1043)
.+|+++|+.|+|||||+++++..... .. ....|.+........ .+.+..+++|||||+.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-----------------~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-----------------NT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-----------------Cc---CCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 45999999999999999999742110 00 011122222111111 2356789999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHH-----HHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTL-----TVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-----~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.|.......++.+|++++|+|+.+.-..... .+.......++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 64 KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 9988788888999999999999875322211 12233334678999999999976
No 234
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.49 E-value=4.5e-13 Score=135.94 Aligned_cols=111 Identities=21% Similarity=0.174 Sum_probs=75.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|.+|+|||||+++++...... .+ ..++.........+++ ..+++|||||+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~----------------~~------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT----------------DY------DPTIEDSYTKQCEIDGQWAILDILDTAGQ 60 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc----------------cc------CCCccceEEEEEEECCEEEEEEEEECCCC
Confidence 479999999999999999997432100 00 0011111111223333 57889999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|+.+....+...-| +.....++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 61 EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 99999888999999999999999874332222222 11223478999999999975
No 235
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.49 E-value=1e-13 Score=140.51 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=105.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|...+...+.+.....+....+.....+..+ ...+.+|||||+.++...+..+++.+|++|+|
T Consensus 1 ~ki~vv-G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILL-GDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILV 79 (161)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence 478888 999999999988887777765554433333222223333 44789999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+|+++..+..... .+..+... ++|+++|+||+|+......+. ..+.+. . ..+++++||++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~-------------~---~~~~~~~Sa~~ 142 (161)
T cd04124 80 FDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKK-FNFAEK-------------H---NLPLYYVSAAD 142 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHH-HHHHHH-------------c---CCeEEEEeCCC
Confidence 9998755544433 22333332 689999999999853211111 111110 1 13568899999
Q ss_pred cCCcchHHHHHHhhc
Q psy11896 158 DSGKTTLTERILFYT 172 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l 172 (1043)
|.|++++++.+....
T Consensus 143 ~~gv~~l~~~l~~~~ 157 (161)
T cd04124 143 GTNVVKLFQDAIKLA 157 (161)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987543
No 236
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=3.4e-13 Score=154.50 Aligned_cols=117 Identities=13% Similarity=0.207 Sum_probs=85.4
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEc
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIID 273 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liD 273 (1043)
....+-.|+|+|.+|+|||||+|+|+..... ....+++|.......+.+.+ ..+.|+|
T Consensus 155 elk~iadValVG~PNaGKSTLln~Lt~~k~~---------------------vs~~p~TT~~p~~Giv~~~~~~~i~~vD 213 (390)
T PRK12298 155 ELKLLADVGLLGLPNAGKSTFIRAVSAAKPK---------------------VADYPFTTLVPNLGVVRVDDERSFVVAD 213 (390)
T ss_pred eeeccccEEEEcCCCCCHHHHHHHHhCCccc---------------------ccCCCCCccCcEEEEEEeCCCcEEEEEe
Confidence 3445668999999999999999999754322 12356788888888888775 4699999
Q ss_pred CCCCCC-------chHHHHHHhHhcCeEEEEEeCCC----CcchHHHHHHHHHHh-----cCCCeEEEEeccCCC
Q psy11896 274 TPGHVD-------FTVEVERALRVLDGAILVLCAVG----GVQSQTLTVNRQMKR-----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~d-------f~~e~~~~l~~~D~~ilVvda~~----g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~ 332 (1043)
|||..+ ....+.+.+..+|++++|+|+.. ....+...+.+.+.. .+.|.++|+||+|+.
T Consensus 214 tPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 214 IPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 999754 33456678899999999999872 122223334444443 368999999999986
No 237
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.49 E-value=1.2e-13 Score=141.39 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=111.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
|+.++ |+.++||+|+..+++.+.+..+..|.+..+.....+..++ .++.||||||+.++...+..+++.+|++++|+
T Consensus 2 ki~iv-G~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVV-GDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 78888 9999999999999999988888878776666555555555 46999999999999999999999999999999
Q ss_pred eCCCCCchhHHH-HHHHHHhc----CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTLT-VNRQMKRY----DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~~-~~~~l~~~----~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..+..... .+..+.+. ..|+++|.||+|+.+.......+.....+. . ... .+++.+||+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~---~------~~~---~~~~e~Sa~ 148 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA---A------EMQ---AEYWSVSAL 148 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH---H------HcC---CeEEEEECC
Confidence 997633322222 22222222 246899999999854321111111101110 0 011 245789999
Q ss_pred ccCCcchHHHHHHhhccc
Q psy11896 157 IDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~~ 174 (1043)
+|.|++++++.+.....+
T Consensus 149 ~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 149 SGENVREFFFRVAALTFE 166 (170)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
No 238
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.49 E-value=1.4e-13 Score=139.26 Aligned_cols=152 Identities=16% Similarity=0.080 Sum_probs=114.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |..++||+|...+........+..+++|++.....+.+++ .++.+|||||+.++...+...++.+|++++|
T Consensus 1 ~ki~li-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFL-GDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 688888 9999999999888888888778889999888887777766 4699999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHH-Hhc--CCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQM-KRY--DVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l-~~~--~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+..... .+..+ ... +.|+++++||+|+.... ..+....+.+. . ..+++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~S 143 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE-------------L---NAMFIETS 143 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHH-------------h---CCEEEEEe
Confidence 9998654333322 22222 223 48999999999985321 11111111111 1 13568899
Q ss_pred ecccCCcchHHHHHHhh
Q psy11896 155 AHIDSGKTTLTERILFY 171 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~ 171 (1043)
|++|.|++++++.+.+.
T Consensus 144 a~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 144 AKAGHNVKELFRKIASA 160 (161)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 239
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=2.4e-13 Score=138.92 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=115.7
Q ss_pred CccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH-----------HHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-----------VEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~-----------~~~~~ 69 (1043)
++++.++ |..++||+|...+..... ...+..+++|++.....+..++..+.+|||||+.+.. .....
T Consensus 2 ~~~i~i~-G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAII-GRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEE-cCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 4677777 999999999966655443 3445678999988888888888899999999985431 12345
Q ss_pred HhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH---HHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP---YRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
.++.+|++++|+|+..+...+...++..+...++|+++++||+|+.+... ....+.+.+.+. ...
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~------------~~~ 148 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP------------FLD 148 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc------------ccc
Confidence 67899999999999988777777777777777899999999999875421 122223322221 112
Q ss_pred ceeeeeeeecccCCcchHHHHHHh
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
..+++++||+++.|++++++.+..
T Consensus 149 ~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 149 YAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CCceEEEeccCCCCHHHHHHHHHH
Confidence 357899999999999999988764
No 240
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.49 E-value=1.7e-13 Score=140.89 Aligned_cols=155 Identities=12% Similarity=0.020 Sum_probs=106.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |.+++||||.......+.+. ...|.+ ......+...+.++.+|||||+.++...+..+++.+|++|+|+
T Consensus 13 ~~ki~l~-G~~~~GKTsL~~~~~~~~~~-~~~~t~--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 13 EMRILMV-GLDAAGKTTILYKLKLGESV-TTIPTI--GFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred ccEEEEE-cCCCCCHHHHHHHHhcCCCC-CcCCcc--ccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 4788888 99999999998777666553 334433 3333455667889999999999999999999999999999999
Q ss_pred eCCCCCch-hHHHHHHHH-Hh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQS-QTLTVNRQM-KR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~-~~~~~~~~l-~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++.... ...+.+..+ .. .++|+++|+||+|+.+.... +++.+.++ +..... ....++++||+
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~-------~~~~~~-~~~~~~~~Sa~ 157 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---AEITEKLG-------LHSIRD-RNWYIQPTCAT 157 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---HHHHHHhC-------ccccCC-CcEEEEEeeCC
Confidence 99864221 112222222 21 35799999999999754221 22333221 111011 12356789999
Q ss_pred ccCCcchHHHHHHhh
Q psy11896 157 IDSGKTTLTERILFY 171 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~ 171 (1043)
+|.|++++++.+...
T Consensus 158 ~g~gv~e~~~~l~~~ 172 (175)
T smart00177 158 SGDGLYEGLTWLSNN 172 (175)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988654
No 241
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.49 E-value=1.4e-13 Score=140.14 Aligned_cols=155 Identities=17% Similarity=0.064 Sum_probs=108.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |..++||++...++..+.+.....|.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 1 ~~ki~i~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 1 MFKLLII-GNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 79 (165)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence 3789999 9999999999888887777666666555444333444443 579999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... ....+.. .+.|+++|+||+|+..... .+....+.+.+ . .+++.+
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---------------~-~~~~~~ 143 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQL---------------G-FEFFEA 143 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHc---------------C-CEEEEE
Confidence 99988543222211 1222322 3578999999999964321 11112222211 1 256889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 144 Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 144 SAKENINVKQVFERLVDIIC 163 (165)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999986543
No 242
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.49 E-value=1.1e-13 Score=140.90 Aligned_cols=155 Identities=11% Similarity=-0.023 Sum_probs=104.5
Q ss_pred ceeeeeecccccccCCccccCCChh----hhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSME----LERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~----~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+.++ |..++||+|...+......+ ...+...|+......+.+++..+.+|||||+.++...+..+++.+|++++|
T Consensus 2 i~~v-G~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 2 VLIL-GLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred EEEE-ecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4556 99999999986554332211 123345677777777888899999999999999999999999999999999
Q ss_pred EeCCCCCchh-HHHHHHHHH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 81 LCAVGGVQSQ-TLTVNRQMK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 81 vDa~~~~~~~-~~~~~~~l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
+|+++.-... ....+..+. ..++|+++++||+|+...... +++.+.+..... .......+++++||
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~Sa 151 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSV---EEIKEVFQDKAE------EIGRRDCLVLPVSA 151 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCH---HHHHHHhccccc------cccCCceEEEEeeC
Confidence 9997532111 111222221 247899999999998654221 222222211110 01112347899999
Q ss_pred cccCCcchHHHHHH
Q psy11896 156 HIDSGKTTLTERIL 169 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~ 169 (1043)
++|.|++++++.+.
T Consensus 152 ~~g~gv~e~~~~l~ 165 (167)
T cd04160 152 LEGTGVREGIEWLV 165 (167)
T ss_pred CCCcCHHHHHHHHh
Confidence 99999999998875
No 243
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.49 E-value=1.8e-13 Score=159.22 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=118.3
Q ss_pred eecccccccCCcccc---CCChhhhhhcCCccccceEEEEe---------------c------------------CeeEE
Q psy11896 10 IKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLW---------------K------------------DHNIN 53 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~---------------~------------------~~~i~ 53 (1043)
|--..|||+...+.+ +|..++|+++|+|++..+..+.+ . ..+++
T Consensus 41 GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 120 (460)
T PTZ00327 41 GHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVS 120 (460)
T ss_pred ccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccccceEe
Confidence 666788988855444 47889999999999987764421 1 13699
Q ss_pred EEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCC-HHHHHHHHHHhh
Q psy11896 54 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD-PYRVINQMRQKT 130 (1043)
Q Consensus 54 liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~-~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~-~~~~~~~l~~~~ 130 (1043)
|+|||||.+|...+..++..+|++++|+|+.++ +..|+.+++..+...+++ +|+|+||+|+.+.+ ..+..+++++.+
T Consensus 121 ~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l 200 (460)
T PTZ00327 121 FVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFV 200 (460)
T ss_pred eeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986 688888888877777775 78999999997422 223334444432
Q ss_pred hhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 131 SRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.. ......+++|+||++|.|++.|++.|...++
T Consensus 201 ~~----------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 201 KG----------TIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred Hh----------hccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 21 1123468899999999999999999986554
No 244
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.49 E-value=4.2e-13 Score=137.88 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=79.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.++|+++|+.|+|||||+++|+... .. . . ..|+......+.+++..+.++||||+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~~---------------~---~----~~t~~~~~~~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE--VV---------------H---T----SPTIGSNVEEIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CC---------------C---c----CCccccceEEEEECCeEEEEEECCCCH
Confidence 3679999999999999999996321 00 0 0 112222334566778899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchH--HHHHHHHHHh---cCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQ--TLTVNRQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~--t~~~~~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
.|......+++.+|++++|+|+.+..... ...+.+.+.. .++|+++++||+|+.+
T Consensus 71 ~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 99888888999999999999998753221 1122222222 3589999999999864
No 245
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.49 E-value=1.4e-13 Score=141.31 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=104.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.. .+..| |+......+.+++.++.+|||||+..+...+..+++.+|++++|+
T Consensus 14 ~~kv~iv-G~~~~GKTsL~~~l~~~~~-~~~~~--t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 14 EMRILIL-GLDNAGKTTILKKLLGEDI-DTISP--TLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred ccEEEEE-CCCCCCHHHHHHHHccCCC-CCcCC--ccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 3677777 9999999999766665533 22233 333344556667889999999999999989999999999999999
Q ss_pred eCCCCCchhH--HHHHHHH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT--LTVNRQM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~--~~~~~~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++.-.... ..+...+ ...++|+++|+||+|+.+.... +++.+.+. +.. ......+++++||+
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~-------~~~-~~~~~~~~~~~Sa~ 158 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSE---EEIREALE-------LDK-ISSHHWRIQPCSAV 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCH---HHHHHHhC-------ccc-cCCCceEEEeccCC
Confidence 9986422211 1122222 2257899999999999653221 22222221 000 01123468999999
Q ss_pred ccCCcchHHHHHH
Q psy11896 157 IDSGKTTLTERIL 169 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~ 169 (1043)
+|.|++++++++.
T Consensus 159 ~g~gi~~l~~~l~ 171 (173)
T cd04154 159 TGEGLLQGIDWLV 171 (173)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999998875
No 246
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.49 E-value=3.4e-13 Score=135.43 Aligned_cols=111 Identities=23% Similarity=0.237 Sum_probs=83.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+...... ....+++|.......+.+.+..+++|||||+.++
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAI--------------------VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEe--------------------ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 69999999999999999997432111 1113466666666667788889999999999876
Q ss_pred hHH--------HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 281 TVE--------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e--------~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
... +...+..+|++++|+|+...........+.. ..+.|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 63 EDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 532 3456689999999999997666655555544 56899999999999864
No 247
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.48 E-value=1.5e-13 Score=139.96 Aligned_cols=153 Identities=14% Similarity=0.018 Sum_probs=111.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||++...+...+.+..+..++++.+.....+..++ .++.+|||||+.++...+..+++.+|++|+
T Consensus 2 ~~ki~i~-G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 2 LFKLLLI-GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 4799999 9999999999888877777777777777666666666655 468999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... .+..+.. .++|+++|+||+|+...... +....+.+. . ..+++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~~~~ 144 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADE-------------L---GIPFLET 144 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHH-------------c---CCeEEEE
Confidence 99998643222222 1222222 35799999999998643211 111111111 1 1357899
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+...
T Consensus 145 Sa~~~~~v~~~~~~i~~~ 162 (166)
T cd01869 145 SAKNATNVEQAFMTMARE 162 (166)
T ss_pred ECCCCcCHHHHHHHHHHH
Confidence 999999999999988754
No 248
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.48 E-value=1.6e-13 Score=138.95 Aligned_cols=151 Identities=13% Similarity=0.041 Sum_probs=101.5
Q ss_pred ceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
+.++ |+.++||+|.......+.. .....| |.......+.+.+.++.+|||||+.++...+..+++.+|++|+|+|+
T Consensus 2 i~~v-G~~~~GKTsl~~~l~~~~~~~~~~~~--t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 2 ILVV-GLDNSGKTTIINQLKPENAQSQIIVP--TVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred EEEE-CCCCCCHHHHHHHHcccCCCcceecC--ccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 4566 9999999999877666542 333333 33333445567788999999999999999999999999999999999
Q ss_pred CCCCchhH-HHHHHHH------HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 84 VGGVQSQT-LTVNRQM------KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 84 ~~~~~~~~-~~~~~~l------~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
++...... ...+..+ ...++|+++|+||+|+.+.... +.+...+. +.... ....+++++||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~---~~~~~~l~-------~~~~~-~~~~~~~~~Sa~ 147 (162)
T cd04157 79 SDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA---VKITQLLG-------LENIK-DKPWHIFASNAL 147 (162)
T ss_pred CcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH---HHHHHHhC-------Ccccc-CceEEEEEeeCC
Confidence 86543211 1111111 1247899999999999754321 12222211 11001 112357899999
Q ss_pred ccCCcchHHHHHH
Q psy11896 157 IDSGKTTLTERIL 169 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~ 169 (1043)
+|.|++++++.+.
T Consensus 148 ~g~gv~~~~~~l~ 160 (162)
T cd04157 148 TGEGLDEGVQWLQ 160 (162)
T ss_pred CCCchHHHHHHHh
Confidence 9999999999875
No 249
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=7.1e-13 Score=133.46 Aligned_cols=133 Identities=17% Similarity=0.264 Sum_probs=98.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
+|.+....||++|..|+|||||+|+|+..... .+ ....+|.|...... ++.+. +.|+|
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L-Ar------------------tSktPGrTq~iNff--~~~~~-~~lVD 76 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNL-AR------------------TSKTPGRTQLINFF--EVDDE-LRLVD 76 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcce-ee------------------cCCCCCccceeEEE--EecCc-EEEEe
Confidence 44445677999999999999999999854321 11 23467888776664 44433 88999
Q ss_pred CCCC----------CCchHHHHHHh---HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC-HHHH
Q psy11896 274 TPGH----------VDFTVEVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRV 339 (1043)
Q Consensus 274 tPG~----------~df~~e~~~~l---~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~-~~~~ 339 (1043)
.||+ ..+...+..++ ....++++++|+.+++.....+++..+...++|+++++||+|+...+ ....
T Consensus 77 lPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~ 156 (200)
T COG0218 77 LPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQ 156 (200)
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHH
Confidence 9996 12444455666 34678899999999999999999999999999999999999998633 3344
Q ss_pred HHHHHHHhC
Q psy11896 340 INQMRQKVG 348 (1043)
Q Consensus 340 ~~~i~~~l~ 348 (1043)
+..+.+.+.
T Consensus 157 l~~v~~~l~ 165 (200)
T COG0218 157 LNKVAEELK 165 (200)
T ss_pred HHHHHHHhc
Confidence 555555444
No 250
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.48 E-value=5.1e-13 Score=150.08 Aligned_cols=121 Identities=16% Similarity=0.206 Sum_probs=84.1
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNIN 270 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~ 270 (1043)
...+...+..|+++|.+|+|||||+++|......+ ....++|.......+.+.+ ..+.
T Consensus 150 ~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~v---------------------a~y~fTT~~p~ig~v~~~~~~~~~ 208 (329)
T TIGR02729 150 LRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKI---------------------ADYPFTTLVPNLGVVRVDDGRSFV 208 (329)
T ss_pred EEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccc---------------------cCCCCCccCCEEEEEEeCCceEEE
Confidence 34445567789999999999999999997543222 1234566666666677766 8999
Q ss_pred EEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCCC---cchHHHHHH-HHHHh-----cCCCeEEEEeccCCCC
Q psy11896 271 IIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGG---VQSQTLTVN-RQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 271 liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~g---~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
++||||+.+ +.....+.+..+|++++|+|+... ...+....| +++.. .++|+++|+||+|+..
T Consensus 209 i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 209 IADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred EEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 999999864 233456667789999999999863 122222222 22322 3689999999999863
No 251
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.48 E-value=5.6e-13 Score=135.12 Aligned_cols=111 Identities=19% Similarity=0.102 Sum_probs=78.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|++|+|||||+++|+...-. ....+.++.......+.+++ ..+++|||||+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS---------------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 6999999999999999999733210 01112222222233344444 578999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh---cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~ 332 (1043)
.|.......++.+|++++|+|+.+....+....|. .... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 61 RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 99988888999999999999998755444443342 2222 468999999999965
No 252
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.48 E-value=9.6e-14 Score=143.61 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=109.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||||...++..+.+..+..|.+..+.....+..++ ..+.+|||+|+.++...+..+++++|++++|
T Consensus 1 ~Ki~vl-G~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLL-GDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 578888 9999999999999988888877777665555445566665 4699999999999999899999999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCC---CHH-HHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGA---DPY-RVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~---~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|+++..+...... ...+.. ...| ++|+||+|+... ... ...++.. .+. . .. . .++++
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~-~~a---~------~~--~-~~~~e 145 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQAR-KYA---K------AM--K-APLIF 145 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHH-HHH---H------Hc--C-CEEEE
Confidence 99987544333222 222322 2345 688999998531 111 1111111 111 0 01 1 35688
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+-
T Consensus 146 ~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 146 CSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999886554
No 253
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.48 E-value=3.5e-13 Score=147.29 Aligned_cols=110 Identities=38% Similarity=0.635 Sum_probs=99.6
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
++++|+.++|+++|+|+......++|+++++++|||||+.+|...+..+++.+|++|+|+|++.++..++..+++.+...
T Consensus 43 ~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~ 122 (267)
T cd04169 43 HATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR 122 (267)
T ss_pred CccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999999999999999999999999999999998888888888888888
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 102 DVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 102 ~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
++|+++++||+|+..++..+.++++++.++
T Consensus 123 ~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 123 GIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred CCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 999999999999987777677778777654
No 254
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.48 E-value=1.5e-13 Score=156.65 Aligned_cols=233 Identities=14% Similarity=0.119 Sum_probs=138.4
Q ss_pred cchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhcccccc
Q psy11896 61 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNES 138 (1043)
Q Consensus 61 ~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~ 138 (1043)
.+|......+.+.++++++|+|+.+........+.+.+ .++|+++|+||+|+...+ .++..+.+++.+ +.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~----k~-- 122 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA----KE-- 122 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH----HH--
Confidence 46777777777899999999999876655555554443 268999999999986432 222222222221 11
Q ss_pred ccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhH
Q psy11896 139 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER 218 (1043)
Q Consensus 139 l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~ 218 (1043)
.......++.+||++|.|+++|++.+..+.. -+++.++|.+|+|||||+|+
T Consensus 123 ----~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~-------------------------~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 123 ----LGLKPVDIILVSAKKGNGIDELLDKIKKARN-------------------------KKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred ----cCCCcCcEEEecCCCCCCHHHHHHHHHHHhC-------------------------CCeEEEECCCCCCHHHHHHH
Confidence 1111235788999999999999998865311 15799999999999999999
Q ss_pred HhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHh----------
Q psy11896 219 ILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL---------- 288 (1043)
Q Consensus 219 Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l---------- 288 (1043)
|+........ .......+|+|.......+ +..+.++||||..... ++...+
T Consensus 174 l~~~~~~~~~---------------~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~-~~~~~l~~~~l~~~~~ 234 (360)
T TIGR03597 174 LLKQNNGDKD---------------VITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSH-QMAHYLDKKDLKYITP 234 (360)
T ss_pred HHhhccCCcc---------------eeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCChh-HhhhhcCHHHHhhcCC
Confidence 9864321111 0012346788877654433 2346799999976431 221111
Q ss_pred -HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC-CHHHHHHHHHHHhCC
Q psy11896 289 -RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVGH 349 (1043)
Q Consensus 289 -~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-~~~~~~~~i~~~l~~ 349 (1043)
.......+.++....+...-..-+......+..+.++++|-+.... +.+...+-+.+.++.
T Consensus 235 ~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~ 297 (360)
T TIGR03597 235 KKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLGN 297 (360)
T ss_pred CCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcCC
Confidence 2334556666655432222111111222234456777777776533 333444444555543
No 255
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.48 E-value=5.4e-13 Score=135.09 Aligned_cols=111 Identities=16% Similarity=0.234 Sum_probs=77.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----CeeEEEEcCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPG 276 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~liDtPG 276 (1043)
+|+++|..|+|||||+++++...-.. +..+.+..+.....+.++ ...+++|||||
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G 60 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK---------------------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc
Confidence 69999999999999999997321100 001111122112222232 46799999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+.+|.......++.+|++++|+|+.+.........|..... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 61 QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred hHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 99999888889999999999999987544444444432222 378999999999975
No 256
>PRK04213 GTP-binding protein; Provisional
Probab=99.48 E-value=1.8e-13 Score=144.07 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=109.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCC-----------cchHHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH-----------VDFTVEVERA 70 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~-----------~~~~~~~~~~ 70 (1043)
.+|+.++ |..++||+|...+...+.+.....||+|++..... ++ .+.+|||||+ ..+...+..+
T Consensus 9 ~~~i~i~-G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFV-GRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEe--ec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3677777 99999999998888887777778999999866433 33 6999999995 3344444344
Q ss_pred h----hhcCEEEEEEeCCCCC-----------chhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 71 L----RVLDGAILVLCAVGGV-----------QSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 71 ~----~~aD~iIlVvDa~~~~-----------~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
+ ..+|++++|+|+.... ...+..++..+...++|+++|+||+|+.... .+..+++.+.++
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~---- 158 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLG---- 158 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhc----
Confidence 3 4568999999986421 1234556666667789999999999986533 223344444332
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+...+.....+++++||++| |++++++.+...+.+
T Consensus 159 ---~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 159 ---LYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ---CCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 10001000135789999999 999999999876543
No 257
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.48 E-value=2.4e-13 Score=139.74 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=107.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |.+++||+|...+...+.+.. . ..|.......+.+.+.++.+|||||+..+...+..+++.+|++++|+
T Consensus 15 ~~kv~~~-G~~~~GKTsl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIV-GLDNAGKTTILYQFLLGEVVH-T--SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEE-CCCCCCHHHHHHHHccCCCCC-c--CCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 4788888 999999999977776665542 2 33555556677778889999999999999999999999999999999
Q ss_pred eCCCCCchh--HHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQ--TLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~--~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..... ...+...+.. .++|+++++||+|+...... +++.+.++ ...... ...+++++||+
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~---~~i~~~l~-------~~~~~~-~~~~~~~~SA~ 159 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTP---AEISESLG-------LTSIRD-HTWHIQGCCAL 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCH---HHHHHHhC-------cccccC-CceEEEecccC
Confidence 998643221 1222233222 35899999999998653211 22222221 100011 12367899999
Q ss_pred ccCCcchHHHHHH
Q psy11896 157 IDSGKTTLTERIL 169 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~ 169 (1043)
+|.|++++++.+.
T Consensus 160 ~g~gi~e~~~~l~ 172 (174)
T cd04153 160 TGEGLPEGLDWIA 172 (174)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999885
No 258
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.48 E-value=2.6e-13 Score=140.77 Aligned_cols=161 Identities=11% Similarity=0.008 Sum_probs=110.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||||.......+.+. .. ..|+.+....+..++.++.+|||||+..+...+..+++.+|++++|+
T Consensus 17 ~~~i~iv-G~~~~GKTsli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vv 92 (184)
T smart00178 17 HAKILFL-GLDNAGKTTLLHMLKNDRLA-QH--QPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLV 92 (184)
T ss_pred cCEEEEE-CCCCCCHHHHHHHHhcCCCc-cc--CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 4678888 99999999997777665442 22 33566666677778899999999999999999999999999999999
Q ss_pred eCCCCCch--hHHHHHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQS--QTLTVNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~--~~~~~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++.... ....+...+. ..++|+++|+||+|++..... +++.+.++-. ....-..........++++||+
T Consensus 93 D~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~l~l~-~~~~~~~~~~~~~~~i~~~Sa~ 168 (184)
T smart00178 93 DAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASE---DELRYALGLT-NTTGSKGKVGVRPLEVFMCSVV 168 (184)
T ss_pred ECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCH---HHHHHHcCCC-cccccccccCCceeEEEEeecc
Confidence 99864221 1112222222 257899999999998653211 3344433210 0000000012245678999999
Q ss_pred ccCCcchHHHHHHh
Q psy11896 157 IDSGKTTLTERILF 170 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~ 170 (1043)
+|.|++++++.+..
T Consensus 169 ~~~g~~~~~~wl~~ 182 (184)
T smart00178 169 RRMGYGEGFKWLSQ 182 (184)
T ss_pred cCCChHHHHHHHHh
Confidence 99999999998864
No 259
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.48 E-value=3.4e-13 Score=136.49 Aligned_cols=113 Identities=20% Similarity=0.152 Sum_probs=78.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+...-... .....+.........+......+++|||||+.+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 62 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED-------------------SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-------------------CCCceeeeEEEEEEEECCEEEEEEEEECcchHHH
Confidence 699999999999999999973321110 0011122222222233333467899999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH----HHhcCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ----MKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~----~~~~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++++|+|+.+..+.+....|.. ....++|++++.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 63 RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 8888888999999999999998655554444422 223578999999999975
No 260
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.48 E-value=4.4e-13 Score=136.07 Aligned_cols=110 Identities=21% Similarity=0.153 Sum_probs=73.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|++|+|||||+++++...-.. ++. .++..........+ ...+.+|||||+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~----------------~~~------~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD----------------DYD------PTIEDSYRKQIEIDGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc----------------ccC------CchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 69999999999999999997432110 000 00001111122233 3578899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|+.+........-| +.....+.|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 60 EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred cchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9998888899999999999999874332222222 11222468999999999975
No 261
>KOG0093|consensus
Probab=99.48 E-value=1.6e-13 Score=127.73 Aligned_cols=155 Identities=16% Similarity=0.036 Sum_probs=114.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+.|+ |++++||+|+...|.-|++....-..+.++.+...+... ..++.+|||+|++++...+..+++++++.|+
T Consensus 21 mfKllii-GnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 21 MFKLLII-GNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred eeeEEEE-ccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 5799999 999999999999999999988776666666555544333 3579999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHH-HHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVNR-QMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~-~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+.|++..-+....+-|. +++ ..+.|+|+|.||+|+.+.. ..+.-..+.+.++ + ..+..
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG-------------f---efFEt 163 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLG-------------F---EFFET 163 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhC-------------h---HHhhh
Confidence 99998644333333222 222 3478999999999986421 1111123333332 2 33569
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||+.+.|+..+++.+....-
T Consensus 164 SaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 164 SAKENINVKQVFERLVDIIC 183 (193)
T ss_pred cccccccHHHHHHHHHHHHH
Confidence 99999999999998876554
No 262
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.48 E-value=2.3e-13 Score=140.54 Aligned_cols=119 Identities=17% Similarity=0.248 Sum_probs=85.5
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEE
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINII 272 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~li 272 (1043)
..+..+..+|+++|++|+|||||+++|+.... ... .....|.|...... .++ ..+.+|
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~-~~~------------------~~~~~~~t~~~~~~--~~~-~~~~li 69 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKK-LAR------------------TSKTPGRTQLINFF--EVN-DGFRLV 69 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc------------------ccCCCCcceEEEEE--EeC-CcEEEE
Confidence 34456678999999999999999999974321 000 11134455544332 223 379999
Q ss_pred cCCCCCC----------chHHHHHHhH---hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 273 DTPGHVD----------FTVEVERALR---VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 273 DtPG~~d----------f~~e~~~~l~---~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
||||+.+ |...+..+++ .+|++++|+|+..++..++..+++.+...++|+++|+||+|+..
T Consensus 70 DtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 70 DLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred eCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999632 3333334444 46899999999999999999888888888999999999999863
No 263
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.48 E-value=1.1e-12 Score=132.90 Aligned_cols=113 Identities=22% Similarity=0.205 Sum_probs=81.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|+...-.. +. ...+.+...........+..+.+|||||+.+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 63 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISI-----VS---------------PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEe-----cc---------------CCCCceeceEEEEEEcCCeEEEEEECCCCCc
Confidence 579999999999999999997432100 00 0112233333333445567899999999865
Q ss_pred chH--------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FTV--------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~--------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
... .....++.+|++++|+|+.+........+.+.+...+.|.++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 64 PKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred chHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 432 33456789999999999998866666677777777789999999999986
No 264
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.48 E-value=8.9e-13 Score=133.35 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=80.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
++|+++|++|+|||||+++|+...-.. +...+++.+.....+.+++ ..+++|||||+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN---------------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc---------------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 379999999999999999997332111 1233444444444455555 46899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH-Hhc--CCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM-KRY--DVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~-~~~--~~p~ivviNKiD~~ 332 (1043)
..|...+...++.+|++++|+|+.+.-+.+....| ... ... +.|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 60 ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 99988888889999999999999875443333333 222 233 48999999999985
No 265
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.48 E-value=2.2e-13 Score=141.04 Aligned_cols=157 Identities=13% Similarity=0.059 Sum_probs=107.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++|||+...+...+.+.. ..| |.......+...+..+.+|||||+.++...+..+++.+|++|+|+
T Consensus 17 ~~kv~lv-G~~~vGKTsli~~~~~~~~~~-~~~--T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 17 EVRILMV-GLDAAGKTTILYKLKLGEVVT-TIP--TIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred ccEEEEE-cCCCCCHHHHHHHHhcCCccc-cCC--ccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 4688888 999999999987776665543 334 334444556677889999999999999999999999999999999
Q ss_pred eCCCCCch--hHHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQS--QTLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~--~~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++.... ....+...+.. ..+|+++|+||.|+.+.... +++...++ +.. .......++++||+
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~-------~~~-~~~~~~~~~~~Sa~ 161 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLG-------LHS-VRQRNWYIQGCCAT 161 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhC-------CCc-ccCCcEEEEeeeCC
Confidence 99753221 11122222222 35799999999998653222 22333322 110 00112346789999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 162 tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 162 TAQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999886553
No 266
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.48 E-value=1.7e-13 Score=140.52 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=109.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...+.....++.+..|.+.... ...+..++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 2 ~~ki~vv-G~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVML-GAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 4788888 9999999999988888888766666543222 22344555 469999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHH----hcCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~----~~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.....- +..+. ..++|+++|+||+|+.+.... .....+.+. .. .+++.
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~-------------~~---~~~~e 143 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLARE-------------FN---CPFFE 143 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHH-------------hC---CEEEE
Confidence 999987655444332 22222 246899999999998542111 011111111 11 35678
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.+...+
T Consensus 144 ~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 144 TSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999887543
No 267
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.48 E-value=2.9e-13 Score=143.90 Aligned_cols=156 Identities=30% Similarity=0.309 Sum_probs=114.1
Q ss_pred cceeeeeecccccccCCc-------------------cccCCChhhhhhcCCccccceEEEEec-----CeeEEEEeCCC
Q psy11896 4 KVKIIHIKQEQVRGKDNV-------------------GAVMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPG 59 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~-------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~-----~~~i~liDTPG 59 (1043)
++.++ |..++||++... ++.+|..++|+++|+|++.....+.+. .+.+++|||||
T Consensus 2 nv~ii-G~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 2 NVAIA-GHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred cEEEE-cCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 35556 999999998732 245788889999999999887777654 36899999999
Q ss_pred CcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-------CHHHHHHHHHHhhhh
Q psy11896 60 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-------DPYRVINQMRQKTSR 132 (1043)
Q Consensus 60 ~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-------~~~~~~~~l~~~~~~ 132 (1043)
+.+|...+..+++.+|++|+|+|+..+...++..+++.+...++|+++|+||+|+... +....+.++.+.+..
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888777777777776678999999999998521 111223333344444
Q ss_pred ccccccccCCCCccc----eeeeeeeecccCCcc
Q psy11896 133 WISNESLSEHKPIEY----IRNIGISAHIDSGKT 162 (1043)
Q Consensus 133 ~~~~~~l~~~~~~~~----~~ii~iSa~~g~Gi~ 162 (1043)
.+........ ..+ ..++..|++.+.++.
T Consensus 161 ~~~~~~~~~~--~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 161 IIASFSTTLS--FLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHhcCCCc--eEeccCCCeEEEEecCCCeEEe
Confidence 4433332211 112 347778999998876
No 268
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.47 E-value=4.5e-13 Score=137.00 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=76.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+++|.... . .. ...|+......+.+++..+++|||||+.+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~---------------~~-------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~ 56 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F---------------MQ-------PIPTIGFNVETVEYKNLKFTIWDVGGKHKL 56 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C---------------CC-------cCCcCceeEEEEEECCEEEEEEECCCChhc
Confidence 58899999999999999996321 0 00 011222222345677889999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcch-HHHHHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~-~t~~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
...+...++.+|++++|+|+.+.-.. .....+.... ..+.|+++|.||+|+..
T Consensus 57 ~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 57 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 88888889999999999999863211 1122222222 13479999999999863
No 269
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.47 E-value=2.3e-13 Score=122.15 Aligned_cols=80 Identities=29% Similarity=0.536 Sum_probs=73.8
Q ss_pred cEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC---cEEEeceEEEeccCCeeecCeecCCCEEEEccC-cccc
Q psy11896 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCAS 576 (1043)
Q Consensus 502 ~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~---~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~ 576 (1043)
|.++|||+.+|++ |+++|+|||+|+|++||+|++...+ .++++.+|+.++|.+..++++++||||+++.|+ ++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 4689999999998 9999999999999999999987653 357899999999999999999999999999999 8899
Q ss_pred CcEEe
Q psy11896 577 GDTFV 581 (1043)
Q Consensus 577 Gdtl~ 581 (1043)
||||+
T Consensus 81 Gdtl~ 85 (86)
T cd03691 81 GDTIC 85 (86)
T ss_pred cceec
Confidence 99996
No 270
>KOG0078|consensus
Probab=99.47 E-value=2.6e-13 Score=136.51 Aligned_cols=154 Identities=16% Similarity=0.013 Sum_probs=119.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||++++ ||+++||+.......-+.+.......+.+|.....+..++. .+.+|||+|+++|...+..|++.|+++++
T Consensus 12 ~~kvlli-GDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~L 90 (207)
T KOG0078|consen 12 LFKLLLI-GDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILL 90 (207)
T ss_pred EEEEEEE-CCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEE
Confidence 5899999 99999999999999989988887777788888888888775 69999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.+...+.....-| +.+.+ .++|.+||.||+|+... -..+.-+.+...++ .. .+.+
T Consensus 91 vyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-------------~~---F~Et 154 (207)
T KOG0078|consen 91 VYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG-------------IK---FFET 154 (207)
T ss_pred EEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC-------------Ce---EEEc
Confidence 9999865544443322 33333 36889999999998652 12233344444432 33 3569
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.||++.+-.++...
T Consensus 155 SAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 155 SAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred cccCCCCHHHHHHHHHHHH
Confidence 9999999999998887544
No 271
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.47 E-value=2e-13 Score=138.27 Aligned_cols=152 Identities=16% Similarity=0.058 Sum_probs=105.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...+...+.+.....|. +.+.....+..++ ..+.||||||+.+|...+..+++.+|++++
T Consensus 1 ~~ki~i~-G~~~vGKTsl~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (163)
T cd04136 1 EYKVVVL-GSGGVGKSALTVQFVQGIFVEKYDPT-IEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVL 78 (163)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhCCCCcccCCc-hhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEE
Confidence 4789999 99999999998777777766554443 3344444455555 457889999999999999999999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+.... ..+..+. ..++|+++|+||+|+..... .+....+.+. +. .++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~~ 142 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQ-------------WG---CPFYE 142 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHH-------------cC---CeEEE
Confidence 9999864333222 2222332 23689999999999864211 1111111111 11 36789
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 143 TSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred ecCCCCCCHHHHHHHHHHh
Confidence 9999999999999988753
No 272
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.47 E-value=9.5e-14 Score=141.09 Aligned_cols=98 Identities=23% Similarity=0.323 Sum_probs=85.9
Q ss_pred EEEEEeeCCCCCCCCeEEEecccccc----CCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccc--cCChhhH
Q psy11896 701 VIGTLEPLPPSANTKLEFIDETVGTN----VPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNEIS 774 (1043)
Q Consensus 701 v~~~~eP~~~~~~~~~~f~~~~~~~~----l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~--~~~~~~~ 774 (1043)
-.|.+.| +..+++.|+|.+.+.. +..+++++|++||+||+.+|||+|+||+||+|+|.|+..|. .++++++
T Consensus 75 ~iw~fgP---~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~q 151 (178)
T cd01683 75 SIWAFGP---DTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQ 151 (178)
T ss_pred CeEEEcC---CCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHH
Confidence 3566666 2356799999887443 44578889999999999999999999999999999999998 8889999
Q ss_pred HHHHHHHHHHHHHHhccccccccceee
Q psy11896 775 FILAAHGAMKQAYEEGVWQILEPIMSV 801 (1043)
Q Consensus 775 ~~~a~~~a~~~a~~~~~~~llEP~~~~ 801 (1043)
|++|+|+||++|++.|.++||||+|.+
T Consensus 152 i~~aar~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 152 IIPTARRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHHHHHHCCCEEEcceEeC
Confidence 999999999999999999999999974
No 273
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.47 E-value=4.2e-13 Score=139.97 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=78.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
-.+|+++|+.|+|||||+++|.... ... ...|+......+.+.+..+.++||||+.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~--~~~----------------------~~~T~~~~~~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDR--LAQ----------------------HVPTLHPTSEELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC--Ccc----------------------cCCccCcceEEEEECCEEEEEEECCCCH
Confidence 3679999999999999999996321 100 0012222334566778899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHH----HhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~----~~~~~p~ivviNKiD~~~ 333 (1043)
+|......+++.+|++++|+|+.+.-... ....+... ...+.|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 75 QARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 98888888889999999999998642111 11222222 235689999999999864
No 274
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.47 E-value=1.5e-13 Score=148.34 Aligned_cols=157 Identities=18% Similarity=0.138 Sum_probs=100.8
Q ss_pred hHHHHHHHhhhcCEEEEEEeCCCCC-chhHHH-HHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccccccc
Q psy11896 63 FTVEVERALRVLDGAILVLCAVGGV-QSQTLT-VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLS 140 (1043)
Q Consensus 63 ~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~-~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~ 140 (1043)
+......+++++|++++|+|++++. +..... .+..+...++|+++|+||+||.... . ...+..+.+.
T Consensus 26 ~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~-~-~~~~~~~~~~--------- 94 (245)
T TIGR00157 26 KNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE-D-MEKEQLDIYR--------- 94 (245)
T ss_pred cceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH-H-HHHHHHHHHH---------
Confidence 3333445789999999999998644 333322 2334455789999999999996422 1 1112222221
Q ss_pred CCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHh
Q psy11896 141 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 141 ~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll 220 (1043)
.. ..+++.+||++|.|+++|++.+.. +.++++|++|+|||||+|+|+
T Consensus 95 ---~~-g~~v~~~SAktg~gi~eLf~~l~~-----------------------------~~~~~~G~sgvGKStLiN~L~ 141 (245)
T TIGR00157 95 ---NI-GYQVLMTSSKNQDGLKELIEALQN-----------------------------RISVFAGQSGVGKSSLINALD 141 (245)
T ss_pred ---HC-CCeEEEEecCCchhHHHHHhhhcC-----------------------------CEEEEECCCCCCHHHHHHHHh
Confidence 01 135788999999999999987742 348899999999999999998
Q ss_pred cccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 221 FYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
..... +.+.+... ..+.+++|.......+ .+ ..++||||...|
T Consensus 142 ~~~~~--~t~~i~~~-----------~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 142 PSVKQ--QVNDISSK-----------LGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred hhhhc--cccceecc-----------CCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 43211 11122111 1234557777666655 22 379999997553
No 275
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.47 E-value=2.2e-11 Score=152.27 Aligned_cols=145 Identities=22% Similarity=0.258 Sum_probs=105.8
Q ss_pred hhhhhcCCccccceEEEEecCe------------------eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchh
Q psy11896 29 ELERQRGITIQSAATYTLWKDH------------------NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ 90 (1043)
Q Consensus 29 ~~e~~~G~T~~~~~~~~~~~~~------------------~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~ 90 (1043)
++....|+|.+.....+.++.. .++|||||||.+|......++..+|++++|+|+++++..+
T Consensus 487 ~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~q 566 (1049)
T PRK14845 487 AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQ 566 (1049)
T ss_pred ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHh
Confidence 4555668999999888876521 2899999999999888888889999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEEecCCCC-CCC--------------HHHHHHHHHHhhhhc---cccccccCC------CCcc
Q psy11896 91 TLTVNRQMKRYDVPCIAFINKLDRL-GAD--------------PYRVINQMRQKTSRW---ISNESLSEH------KPIE 146 (1043)
Q Consensus 91 ~~~~~~~l~~~~~piilvlNKiDl~-~~~--------------~~~~~~~l~~~~~~~---~~~~~l~~~------~~~~ 146 (1043)
+.+.+..+...++|+++|+||+|+. .+. .++..+++...+... +...++... ....
T Consensus 567 T~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~ 646 (1049)
T PRK14845 567 TIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTR 646 (1049)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCC
Confidence 9999988888899999999999985 322 122233332221111 122222211 1123
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..+++||||++|+|+++|++.+.....
T Consensus 647 ~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 647 TVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 468899999999999999988765444
No 276
>PRK12289 GTPase RsgA; Reviewed
Probab=99.47 E-value=2.3e-13 Score=153.09 Aligned_cols=152 Identities=18% Similarity=0.138 Sum_probs=97.1
Q ss_pred HHHhhhcCEEEEEEeCCCCC-chhH-HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 68 ERALRVLDGAILVLCAVGGV-QSQT-LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~-~~~~-~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
..++.++|.+++|+|+.++. .... ...+..+...++|+++|+||+||.+.. +. +.+.+.+. ..
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~--~~-~~~~~~~~------------~~ 148 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPT--EQ-QQWQDRLQ------------QW 148 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChH--HH-HHHHHHHH------------hc
Confidence 34688999999999997533 2221 233334455789999999999997421 11 22222221 01
Q ss_pred cceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCC
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 225 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~ 225 (1043)
. .+++++||++|.|+++|++.+.. ..++++|++|+|||||+|+|+.....
T Consensus 149 g-~~v~~iSA~tg~GI~eL~~~L~~-----------------------------ki~v~iG~SgVGKSSLIN~L~~~~~~ 198 (352)
T PRK12289 149 G-YQPLFISVETGIGLEALLEQLRN-----------------------------KITVVAGPSGVGKSSLINRLIPDVEL 198 (352)
T ss_pred C-CeEEEEEcCCCCCHHHHhhhhcc-----------------------------ceEEEEeCCCCCHHHHHHHHcCcccc
Confidence 1 25789999999999998887741 13799999999999999999843321
Q ss_pred ceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 226 ISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 226 ~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
. .+.+.+. ..+-+.+|.......+.-+ ..|+||||...|
T Consensus 199 ~--t~~vs~~-----------~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 199 R--VGKVSGK-----------LGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred c--cccccCC-----------CCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 1 1222221 1234556766654444222 279999997654
No 277
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4e-13 Score=139.56 Aligned_cols=143 Identities=25% Similarity=0.334 Sum_probs=110.0
Q ss_pred CCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC
Q psy11896 25 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 104 (1043)
Q Consensus 25 ~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p 104 (1043)
.|+.|+|+++|+|+.+....++..+.++-.+|+|||.||.++++....+.|++|+|+.|.+|+.+|+.+++...++.++|
T Consensus 50 id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp 129 (394)
T COG0050 50 IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVP 129 (394)
T ss_pred hccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc-CC-------cchHHHHHHhhcc
Q psy11896 105 -CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID-SG-------KTTLTERILFYTG 173 (1043)
Q Consensus 105 -iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g-~G-------i~~L~~~l~~~l~ 173 (1043)
+++++||+|+.+. .++++........++..+++.. ...|++.-||..- +| |.+|++.+..|.+
T Consensus 130 ~ivvflnK~Dmvdd--~ellelVemEvreLLs~y~f~g----d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 130 YIVVFLNKVDMVDD--EELLELVEMEVRELLSEYGFPG----DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred EEEEEEecccccCc--HHHHHHHHHHHHHHHHHcCCCC----CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 7789999999862 2333444433333343333322 2345555555432 22 3555555555544
No 278
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.47 E-value=2.5e-13 Score=138.32 Aligned_cols=154 Identities=13% Similarity=0.007 Sum_probs=106.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|+..+...+.+..+..+.+..+.....+..++ .++.+|||||+.++...+..+++.+|++|+
T Consensus 2 ~~ki~ii-G~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 2 IFKYIII-GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 5799999 9999999999888877776655544433344333444544 478999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|+++..+.+....| ..+. ..+.|+++|+||+|+...... ..++..+... .. ..+++.+||
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~-~~~~~~~~~~----------~~---~~~~~e~Sa 146 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDV-TYEEAKQFAD----------EN---GLLFLECSA 146 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCc-CHHHHHHHHH----------Hc---CCEEEEEEC
Confidence 9999865433332222 2222 235789999999999643210 0111111110 01 125688999
Q ss_pred cccCCcchHHHHHHh
Q psy11896 156 HIDSGKTTLTERILF 170 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~ 170 (1043)
++|.|+++++..++.
T Consensus 147 ~~~~~i~e~f~~l~~ 161 (166)
T cd04122 147 KTGENVEDAFLETAK 161 (166)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999988764
No 279
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.47 E-value=1.5e-13 Score=139.98 Aligned_cols=154 Identities=12% Similarity=0.019 Sum_probs=105.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |++++||+|....+....+..+..|....+.....+..+ ...+.+|||||+.++.......++.+|++|+|
T Consensus 1 ~ki~vv-G~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLV-GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence 688888 999999999987776666555555544333333333333 35799999999998887778889999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+|+++..+.+.... ...+.. .++|+++|+||+|+...........+.+ ....+++.+||++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~----------------~~~~~~~e~Sa~~ 143 (166)
T cd00877 80 FDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHR----------------KKNLQYYEISAKS 143 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHH----------------HcCCEEEEEeCCC
Confidence 99986544433322 222222 2699999999999863221111111110 1123578899999
Q ss_pred cCCcchHHHHHHhhcc
Q psy11896 158 DSGKTTLTERILFYTG 173 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l~ 173 (1043)
|.|++++++.+...+-
T Consensus 144 ~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 144 NYNFEKPFLWLARKLL 159 (166)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999999999986553
No 280
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.47 E-value=5.9e-13 Score=134.94 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=77.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|+...-.. ......|.+.......+...+..+.+|||||+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~ 62 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-------------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-------------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHH
Confidence 369999999999999999997332100 0111223333333333334456789999999998
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHH-HHHHHHHHh---cCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|.......++.+|++++|+|+...-.-.. ...+..+.. .+.|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 63 YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 88877788899999999999986432222 222232222 357899999999976
No 281
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.47 E-value=2.7e-13 Score=138.35 Aligned_cols=155 Identities=16% Similarity=0.020 Sum_probs=111.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||+|+..+...+.+..+..|.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++|+
T Consensus 3 ~~ki~vv-G~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 3 LFKLLLI-GDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 4789999 9999999999888888888777777776665555555555 478999999999999888899999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|+++..+.....- ...+.. .+.|+++|+||+|+.+.... ..+...+... ... .+++++||
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~----------~~~---~~~~~~Sa 147 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVV-SKEEGEALAD----------EYG---IKFLETSA 147 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCC-CHHHHHHHHH----------HcC---CEEEEEeC
Confidence 999986443332222 222222 36799999999999742110 1111111111 011 25689999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|.|++++++.+...
T Consensus 148 ~~~~~v~~~~~~i~~~ 163 (167)
T cd01867 148 KANINVEEAFFTLAKD 163 (167)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988754
No 282
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.47 E-value=1.6e-13 Score=139.31 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=104.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||++...+...+.+..+..+ ++.+.....+.+++ .++.+|||||+.++...+..+++.+|++++
T Consensus 2 ~~ki~i~-G~~~~GKtsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVV-GGGGVGKSALTIQFIQSYFVTDYDP-TIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHHhCCCCcccCC-CccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 4789999 9999999999777766665544444 33333333444555 468899999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHH----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|+++..+..... .+..+ ...++|+++++||+|+.+..... .+...+... ... .+++++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~-~~~~~~~~~------------~~~-~~~~~~S 145 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS-REEGQELAR------------KLK-IPYIETS 145 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec-HHHHHHHHH------------HcC-CcEEEee
Confidence 99998643322221 11122 22478999999999986532110 111111110 011 2568899
Q ss_pred ecccCCcchHHHHHHhh
Q psy11896 155 AHIDSGKTTLTERILFY 171 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~ 171 (1043)
|++|.|++++++.+...
T Consensus 146 a~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 146 AKDRLNVDKAFHDLVRV 162 (164)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999988754
No 283
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.47 E-value=1.8e-13 Score=143.44 Aligned_cols=155 Identities=13% Similarity=0.021 Sum_probs=106.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcch--------HHHHHHHhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDF--------TVEVERALR 72 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~--------~~~~~~~~~ 72 (1043)
||+.++ |+.++||+|...+++.+.++.+..|.++.+.....+.+++ +.+.||||||+.++ ......+++
T Consensus 1 ~kI~iv-G~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVL-GAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 688888 9999999999999888888888888777665545556666 56889999998643 112445678
Q ss_pred hcCEEEEEEeCCCCCchhHHHH-HHHHH------hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTV-NRQMK------RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~-~~~l~------~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
.+|++|+|+|+++..+...... +..+. ..++|+++|+||+|+...... ..+.++.... ..+
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~-~~~~~~~~~~---------~~~-- 147 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA-PRHVLSVLVR---------KSW-- 147 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc-cHHHHHHHHH---------Hhc--
Confidence 9999999999986544333222 22222 246899999999999643211 0111111100 001
Q ss_pred cceeeeeeeecccCCcchHHHHHHhh
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
..+++++||++|.|+++|++.+...
T Consensus 148 -~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 148 -KCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred -CCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1356889999999999999988753
No 284
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.47 E-value=6.6e-13 Score=135.58 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=76.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|+.|+|||||+++|.... . ..+ ...-|.++ ....+.+..+++|||||+.+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~--~---------------~~~---~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~ 65 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQ--S---------------VTT---IPTVGFNV----ETVTYKNVKFNVWDVGGQDK 65 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCC--C---------------ccc---cCCcccce----EEEEECCEEEEEEECCCCHH
Confidence 579999999999999999996311 0 000 01112222 23445778999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcch-HHHHHHHHH-H---hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQM-K---RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~-~t~~~~~~~-~---~~~~p~ivviNKiD~~~ 333 (1043)
|......+++.+|++|+|+|+.+.... .....+... . ..+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 66 IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 988888888999999999999874221 112222222 2 24589999999999863
No 285
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.47 E-value=2.7e-13 Score=152.05 Aligned_cols=114 Identities=22% Similarity=0.237 Sum_probs=96.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+++|+|.||+|||||+|+|+.....| ++| ..|+|.+.-...+..+|+.+.++||+|..+
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AI--------------VTd------I~GTTRDviee~i~i~G~pv~l~DTAGiRe 277 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAI--------------VTD------IAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceE--------------ecC------CCCCccceEEEEEEECCEEEEEEecCCccc
Confidence 579999999999999999999776655 334 789999999999999999999999999876
Q ss_pred chHHH--------HHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEV--------ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~--------~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
-.+.+ ..++..+|.+++|+|+.++...+....+. +...+.|+++|+||+|+...
T Consensus 278 t~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 278 TDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 44443 34568999999999999987777777766 56678899999999998753
No 286
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.46 E-value=2.3e-13 Score=140.58 Aligned_cols=153 Identities=13% Similarity=0.039 Sum_probs=109.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec------------CeeEEEEeCCCCcchHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------DHNINIIDTPGHVDFTVEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~------------~~~i~liDTPG~~~~~~~~~~ 69 (1043)
.+|+.++ |++++||+|.........+..+..+.++.+.....+.+. ..++.||||||+.++...+..
T Consensus 4 ~~ki~iv-G~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 4 LIKFLAL-GDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 3688888 999999999988888888877777766655554444433 357999999999999999999
Q ss_pred HhhhcCEEEEEEeCCCCCchhHHHHH-HHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCC
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEH 142 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~~~~~-~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~ 142 (1043)
+++++|++|+|+|+++..+......| ..+.. .+.|+++|+||+|+.... ..+....+.+.+
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~------------ 150 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY------------ 150 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc------------
Confidence 99999999999999864333332222 22222 367899999999986421 111122222211
Q ss_pred CCccceeeeeeeecccCCcchHHHHHHhh
Q psy11896 143 KPIEYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 143 ~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
. .+++.+||++|.|++++++.+...
T Consensus 151 -~---~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 151 -G---IPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred -C---CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 256889999999999999998753
No 287
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.46 E-value=3e-13 Score=146.33 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=108.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |+.++||||+..+++.+.++.+..|.+ .+.....+..++ +++.||||+|+.+|......++..+|++|+|
T Consensus 1 ~KVvvl-G~~gvGKTSLi~r~~~~~f~~~y~pTi-~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVL-GASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCCh-hHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 688888 999999999998888887776555533 345455556655 5788999999999888777788999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh------------cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR------------YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~------------~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+|.++.-+.+.. ..+..+.. .++|+|+|+||+|+..... ...+++.+.+.. ...
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~-v~~~ei~~~~~~------------~~~ 145 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE-VQRDEVEQLVGG------------DEN 145 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc-cCHHHHHHHHHh------------cCC
Confidence 999864332222 22222321 3689999999999864211 111223222210 012
Q ss_pred eeeeeeeecccCCcchHHHHHHhhc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
..++++||++|.|++++++.+....
T Consensus 146 ~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 146 CAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998754
No 288
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.46 E-value=2.4e-13 Score=136.02 Aligned_cols=112 Identities=25% Similarity=0.238 Sum_probs=78.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|++|+|||||+++|+... . +.+..++++.......+.+++ +.+.+|||||+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-F--------------------ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-C--------------------cCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 579999999999999999997432 1 122344566666665566777 78999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCC-------CcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVG-------GVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~-------g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.+|........+.++.++.++|... +.......+++.+.. +.|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 61 EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCc
Confidence 9997666555666666666666543 333444444444433 889999999999864
No 289
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.46 E-value=4e-13 Score=157.67 Aligned_cols=112 Identities=23% Similarity=0.233 Sum_probs=87.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+.....+ .....|+|.+.....+.+++..+++|||||+.+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------------v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAI--------------------VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc--------------------cCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 579999999999999999997432211 123567777777777888899999999999987
Q ss_pred chHH--------HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 280 FTVE--------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e--------~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+... ....++.+|++++|+|+.++...+....|.. ..+.|+++|+||+|+..
T Consensus 276 ~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 276 TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 6543 2345788999999999998876666666655 45789999999999863
No 290
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.46 E-value=2.9e-13 Score=137.39 Aligned_cols=152 Identities=15% Similarity=0.095 Sum_probs=105.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |..++||||...+...+.+.....+.+ .+.....+..++ ..+.+|||||+.++...+..+++.+|++++|
T Consensus 1 ~ki~v~-G~~~~GKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T smart00173 1 YKLVVL-GSGGVGKSALTIQFVQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCcCCcccCCch-hhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence 688898 999999999987777666655554433 333333444444 4788999999999999999999999999999
Q ss_pred EeCCCCCchhHHHH-HHHH----HhcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQM----KRYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l----~~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++..+.....- ...+ ...++|+++|+||+|+..... ......+.+. .. .+++++
T Consensus 79 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~~~ 142 (164)
T smart00173 79 YSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-------------WG---CPFLET 142 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-------------cC---CEEEEe
Confidence 99986433222211 1222 224689999999999864211 1111112111 11 356899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 143 Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 143 SAKERVNVDEAFYDLVREI 161 (164)
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 291
>PTZ00369 Ras-like protein; Provisional
Probab=99.46 E-value=2.3e-13 Score=141.88 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=107.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...++..+.+..+..|.+.... ...+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 5 ~~Ki~ii-G~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 5 EYKLVVV-GGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 5899999 9999999999888888877666555443222 23333443 468899999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+..... ....+. ..++|+++|+||+|+..... ......+.+. .. .+++.
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~---------------~~-~~~~e 146 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS---------------FG-IPFLE 146 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH---------------hC-CEEEE
Confidence 99998654322222 122222 23679999999999864321 1111111111 11 35788
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 147 ~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 147 TSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999986654
No 292
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.46 E-value=7.6e-13 Score=152.22 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=84.4
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-CeeEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNIN 270 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~ 270 (1043)
......-+..|+++|.+|||||||+++|+.....++ ...++|.......+.+. +..+.
T Consensus 151 ~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa---------------------~ypfTTl~PnlG~v~~~~~~~~~ 209 (424)
T PRK12297 151 LRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIA---------------------NYHFTTLVPNLGVVETDDGRSFV 209 (424)
T ss_pred EEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccc---------------------cCCcceeceEEEEEEEeCCceEE
Confidence 334445567899999999999999999985433221 24567777777777777 78999
Q ss_pred EEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCCC--cc--hHHHHHHHHHHh-----cCCCeEEEEeccCCC
Q psy11896 271 IIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGG--VQ--SQTLTVNRQMKR-----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 271 liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~g--~~--~~t~~~~~~~~~-----~~~p~ivviNKiD~~ 332 (1043)
++||||... +.....+.+..+|++++|+|+... .. .....+...+.. .++|.++|+||+|+.
T Consensus 210 laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 210 MADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred EEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 999999754 233455666779999999999742 11 122223333332 478999999999974
No 293
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=2.9e-13 Score=141.31 Aligned_cols=155 Identities=13% Similarity=0.011 Sum_probs=108.8
Q ss_pred ccceeeeeecccccccCCccccCCChhh-hhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMEL-ERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~-e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
||+.++ |+.++||+|+..++..+.+.. +..+.++.+.....+..++ .++.||||||+.++...+..+++.+|++|+
T Consensus 1 ~Ki~vv-G~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLL-GDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 688888 999999999988887777654 3455555454444455554 479999999999998888899999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|++...+..... .+..+.. .++|+++|+||+|+.... .......+...+ . .+++++
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~-------------~---~~~~e~ 143 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEY-------------G---VPFMET 143 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHc-------------C---CeEEEE
Confidence 99998643322222 2222322 367999999999985321 111112222111 1 256889
Q ss_pred eecccCCcchHHHHHHhhccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
||++|.|++++++.+...+..
T Consensus 144 Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 144 SAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877653
No 294
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.46 E-value=1.2e-13 Score=142.17 Aligned_cols=162 Identities=11% Similarity=0.125 Sum_probs=108.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|...+...+.++.+..|.+..+.. ..+..++ +++.||||||+.++...+..+++.+|++|+|
T Consensus 2 ~ki~vv-G~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 2 IKCVVV-GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 688888 99999999999999888887777775543332 2345555 5789999999999988888899999999999
Q ss_pred EeCCCCCchhHHH-HH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|.++..+..... .| ..+.. .++|+++|+||+|+.+.. ...+.+.......+.. ..+. .......++.+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~~~~a--~~~~~~~~~e~ 155 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETGEKLA--RDLKAVKYVEC 155 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHHHHHH--HHhCCcEEEEe
Confidence 9998654433331 22 22322 368999999999986431 1111111100000000 0000 01122467899
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.++.
T Consensus 156 SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 156 SALTQKGLKNVFDEAIL 172 (175)
T ss_pred cCCCCCCHHHHHHHHHH
Confidence 99999999999998875
No 295
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.46 E-value=3e-13 Score=121.20 Aligned_cols=79 Identities=30% Similarity=0.468 Sum_probs=71.3
Q ss_pred cEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc-c---C-ccc
Q psy11896 502 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-G---V-DCA 575 (1043)
Q Consensus 502 ~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-g---l-~~~ 575 (1043)
|.++|||+.++++ |+++|+|||||+|++||.|++...++++++.+|+. ++.+..+++++.||||+++. | + ++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~-~~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGI-FRPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEE-ECCCccCCceECCCCEEEEEccccccCccc
Confidence 5789999999998 99999999999999999999998777899999995 47778999999999999985 4 5 578
Q ss_pred cCcEEe
Q psy11896 576 SGDTFV 581 (1043)
Q Consensus 576 ~Gdtl~ 581 (1043)
+||||+
T Consensus 80 ~Gdtl~ 85 (86)
T cd03699 80 VGDTIT 85 (86)
T ss_pred cccEee
Confidence 999997
No 296
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.46 E-value=6.5e-13 Score=134.41 Aligned_cols=113 Identities=21% Similarity=0.135 Sum_probs=78.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+....... .....+.+.......+......+.+|||||+..|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD-------------------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-------------------cCCcccceEEEEEEEECCEEEEEEEEECCCchhh
Confidence 689999999999999999973321110 1122233333333323333467899999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-----HHHhcCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-----QMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-----~~~~~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++++|+|+.+....+....|. .....+.|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 63 RTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 888888889999999999998754433333332 2223578999999999986
No 297
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.46 E-value=2.8e-13 Score=144.20 Aligned_cols=154 Identities=9% Similarity=-0.013 Sum_probs=112.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
||+.++ |+.++||++...++..+.+..+..|.++.+.....+.++ ...+.||||||+..+...+..+++.+|++|+
T Consensus 1 ~Ki~iv-G~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iil 79 (215)
T cd04109 1 FKIVVL-GDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFL 79 (215)
T ss_pred CEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEE
Confidence 688888 999999999999988888888888877777666666654 3579999999999988889999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh------cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~------~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+++.-+......| ..+.. .+.|+++|+||+|+..... ......+... .. .+.
T Consensus 80 V~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~-------------~~---~~~ 143 (215)
T cd04109 80 VYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA-------------NG---MES 143 (215)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH-------------cC---CEE
Confidence 9999864333332222 22322 2357999999999963211 1111222221 11 245
Q ss_pred eeeeecccCCcchHHHHHHhhcc
Q psy11896 151 IGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+.+||++|.|++++++.++..+.
T Consensus 144 ~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 144 CLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 77999999999999999987654
No 298
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.6e-12 Score=127.71 Aligned_cols=130 Identities=21% Similarity=0.209 Sum_probs=101.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDtPG~~ 278 (1043)
-+|+++|+.++||||++.++........... .. .+. ....|.+|+...+.+..+.+ +.++|.|||||.
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~---~~------~~s--~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~ 79 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEAD---AS------SVS--GKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE 79 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeecc---cc------ccc--cccccceeEeecccceEEcCcceEEEecCCCcH
Confidence 4799999999999999999986544322110 00 000 01155688888888887776 899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcC-CCeEEEEeccCCCCCCHHHHH
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPCIAFINKLDRLGADPYRVI 340 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~-~p~ivviNKiD~~~~~~~~~~ 340 (1043)
+|.-.+.-.++.++++|++||++.+.....+.++......+ +|+++++||.|+..+.+.+.+
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i 142 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKI 142 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHH
Confidence 99999999999999999999999988777777788777777 999999999999877654433
No 299
>PRK00089 era GTPase Era; Reviewed
Probab=99.46 E-value=6e-13 Score=148.67 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=119.7
Q ss_pred ceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhhcC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVLD 75 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~aD 75 (1043)
+.++ |..++||+|.....+.... .....+++|++.....+..++.++.||||||+.+ +...+..++..+|
T Consensus 8 V~ii-G~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D 86 (292)
T PRK00089 8 VAIV-GRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVD 86 (292)
T ss_pred EEEE-CCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 4445 9999999999766555443 3467889999888877777778999999999864 2345566888999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
++++|+|+++++......+...+...++|+++|+||+|+... .....+.+. .+. ....+.+++++||
T Consensus 87 ~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-~~~l~~~~~-~l~-----------~~~~~~~i~~iSA 153 (292)
T PRK00089 87 LVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-KEELLPLLE-ELS-----------ELMDFAEIVPISA 153 (292)
T ss_pred EEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-HHHHHHHHH-HHH-----------hhCCCCeEEEecC
Confidence 999999999877777777777777778999999999999732 222222222 111 0123457899999
Q ss_pred cccCCcchHHHHHHhhccccccccc
Q psy11896 156 HIDSGKTTLTERILFYTGRISEMHE 180 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~~~~~~~~ 180 (1043)
++|.|+++|++.+...+++-+..++
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~~~~y~ 178 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEGPPYYP 178 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCC
Confidence 9999999999999988875443333
No 300
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.46 E-value=1.5e-13 Score=139.55 Aligned_cols=153 Identities=16% Similarity=0.078 Sum_probs=106.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...+...+.+.....| ++.+.....+..++. .+.+|||||+.++...+..+++.+|++++
T Consensus 1 ~~ki~~~-G~~~~GKTsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (164)
T cd04175 1 EYKLVVL-GSGGVGKSALTVQFVQGIFVEKYDP-TIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVL 78 (164)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHhCCCCcccCC-cchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEE
Confidence 4899999 9999999999877776666544444 444433445555544 57799999999999999999999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+.... ..+..+. ..+.|+++|+||+|+..... ....+.+.+.+ . .++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~~ 142 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-------------G---CAFLE 142 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHh-------------C---CEEEE
Confidence 9998754332222 1222222 24689999999999964211 11112222211 1 35689
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|+++++..+...+
T Consensus 143 ~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 143 TSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999987543
No 301
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.46 E-value=7e-13 Score=134.94 Aligned_cols=115 Identities=19% Similarity=0.089 Sum_probs=75.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++|+...-.. .+ ...-|++..........+...+.+|||||+.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~----------------~~---~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~ 62 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS----------------AF---VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC----------------CC---CCceeeEEEEEEEEECCEEEEEEEEECCChHH
Confidence 479999999999999999997322100 00 00112222222222222346799999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++++|+|..+.-..+...-| +.... ...|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 988888889999999999999864333222222 22222 3578999999999853
No 302
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=7.4e-13 Score=153.90 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=85.3
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINI 271 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~l 271 (1043)
...+...+..|+|+|.+|+|||||+++|+.....+ ....++|+......+.+++..+.+
T Consensus 152 ~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkI---------------------adypfTTl~P~lGvv~~~~~~f~l 210 (500)
T PRK12296 152 LVLELKSVADVGLVGFPSAGKSSLISALSAAKPKI---------------------ADYPFTTLVPNLGVVQAGDTRFTV 210 (500)
T ss_pred EEEEecccceEEEEEcCCCCHHHHHHHHhcCCccc---------------------cccCcccccceEEEEEECCeEEEE
Confidence 34445556789999999999999999997543222 225678888888888889999999
Q ss_pred EcCCCCCCc-------hHHHHHHhHhcCeEEEEEeCCCC---c--chHHHH----HHHHH----------HhcCCCeEEE
Q psy11896 272 IDTPGHVDF-------TVEVERALRVLDGAILVLCAVGG---V--QSQTLT----VNRQM----------KRYDVPCIAF 325 (1043)
Q Consensus 272 iDtPG~~df-------~~e~~~~l~~~D~~ilVvda~~g---~--~~~t~~----~~~~~----------~~~~~p~ivv 325 (1043)
+||||..+- ..+..+.+..+|++|+|||+..- . ..+... +.... ...++|+++|
T Consensus 211 aDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVV 290 (500)
T PRK12296 211 ADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVV 290 (500)
T ss_pred EECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEE
Confidence 999997542 23456667889999999999741 1 111111 11111 1246899999
Q ss_pred EeccCCC
Q psy11896 326 INKLDRL 332 (1043)
Q Consensus 326 iNKiD~~ 332 (1043)
+||+|+.
T Consensus 291 lNKiDL~ 297 (500)
T PRK12296 291 LNKIDVP 297 (500)
T ss_pred EECccch
Confidence 9999985
No 303
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.45 E-value=4.9e-13 Score=140.46 Aligned_cols=111 Identities=20% Similarity=0.166 Sum_probs=75.6
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|+.|+|||||+++++...-. . ....++.......+.+++ ..+++|||||+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~--------------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--P--------------------KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--c--------------------cCCCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 4899999999999999999742110 0 001111111122344445 578999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+|......+++.+|++|+|+|+.+....+....| ......++|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 59 SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 9988778888999999999999875433322222 112225789999999999863
No 304
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.45 E-value=7.6e-13 Score=137.30 Aligned_cols=111 Identities=15% Similarity=0.101 Sum_probs=78.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
-.+|+++|.+|+|||||+++|.... ... + . .|.......+.+++..+.++||||+.
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~--~~~---------------~---~----~t~~~~~~~~~~~~~~~~~~D~~G~~ 72 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDR--LAQ---------------H---Q----PTQHPTSEELAIGNIKFTTFDLGGHQ 72 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCC--Ccc---------------c---C----CccccceEEEEECCEEEEEEECCCCH
Confidence 3679999999999999999996321 100 0 0 11222233456678899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcch-HHHHHHHHH----HhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQM----KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~-~t~~~~~~~----~~~~~p~ivviNKiD~~~ 333 (1043)
.+......+++.+|++++|+|+.+...- .....+... ...++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 73 QARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9888888889999999999999864211 122222222 225789999999999864
No 305
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.45 E-value=3.7e-13 Score=135.96 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=104.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...+.+.+.+..+..|.+. +.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 1 ~~ki~ii-G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~ 78 (162)
T cd04138 1 EYKLVVV-GAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 78 (162)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhCCCcCCcCCcch-heEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence 4788888 9999999999888887776655544332 32233444554 458899999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++..+..... .+..+. ..++|+++|+||+|+..... ......+.+.+ ..+++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~ 142 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY----------------GIPYIET 142 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHh----------------CCeEEEe
Confidence 99988643322221 222222 24789999999999865321 11111111111 1256889
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.+..
T Consensus 143 Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 143 SAKTRQGVEEAFYTLVR 159 (162)
T ss_pred cCCCCCCHHHHHHHHHH
Confidence 99999999999998874
No 306
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.45 E-value=1.1e-12 Score=138.54 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=75.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe-eEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDtPG 276 (1043)
.+.+|+++|++|+|||||+++|+...... ....+.|+......+.+.+. .+.+|||||
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G 98 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYA---------------------EDQLFATLDPTTRRLRLPDGREVLLTDTVG 98 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhcc---------------------CCccceeccceeEEEEecCCceEEEeCCCc
Confidence 35789999999999999999997432110 01122344444444555554 899999999
Q ss_pred CCCc-hHH-------HHHHhHhcCeEEEEEeCCCCcchHHHHHH----HHHHhcCCCeEEEEeccCCCC
Q psy11896 277 HVDF-TVE-------VERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df-~~e-------~~~~l~~~D~~ilVvda~~g~~~~t~~~~----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+.+. ... +...+..+|++++|+|+.++........| +.....++|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 99 FIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 8542 121 12235689999999999976554433222 222234689999999999864
No 307
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.45 E-value=7.3e-13 Score=145.89 Aligned_cols=126 Identities=31% Similarity=0.415 Sum_probs=110.4
Q ss_pred eeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHH
Q psy11896 6 KIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV 67 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 67 (1043)
.++ |..++||+|..- ++++|+.++|+++|+|+......+.++++++++|||||+.+|...+
T Consensus 3 ~iv-G~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~ 81 (268)
T cd04170 3 ALV-GHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGET 81 (268)
T ss_pred EEE-CCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHH
Confidence 445 888888887731 3457888999999999999999999999999999999999999999
Q ss_pred HHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 68 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
..+++.+|++++|+|++.+...++..+++++...++|.++++||+|+...+....++.+++.++.
T Consensus 82 ~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~ 146 (268)
T cd04170 82 RAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGR 146 (268)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999988888888999888899999999999999887777777888776653
No 308
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.45 E-value=2.3e-13 Score=142.11 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=109.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||||...++..+.++.+..|.+..... ..+..++ ..+.+|||||+.+|...+..+++.+|++|+|
T Consensus 4 ~ki~~v-G~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 4 IKCVVV-GDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 788888 99999999999999999888777665533221 2233444 5799999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHH-HHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHh-hhhcc--ccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNR-QMK--RYDVPCIAFINKLDRLGADPYRVINQMRQK-TSRWI--SNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~-~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~-~~~~~--~~~~l~~~~~~~~~~ii~i 153 (1043)
+|.++..+..... .|. .+. ..++|+++|+||.|+.+... ..+.+.+. ..... ....+.. .....+.+.+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~--~~~~~~~~~~~~v~~~~~~~~a~--~~~~~~~~e~ 157 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD--TLKKLKEQGQAPITPQQGGALAK--QIHAVKYLEC 157 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChh--hHHHHhhccCCCCCHHHHHHHHH--HcCCcEEEEe
Confidence 9998754444332 232 222 24689999999999964321 01111110 00000 0000000 0112356889
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.++...
T Consensus 158 SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998654
No 309
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.45 E-value=3.5e-13 Score=136.40 Aligned_cols=153 Identities=15% Similarity=0.051 Sum_probs=110.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |.+++||+|+..+...+.+..+..+..+.+.....+..++ ..+.+|||||+.++...+...++.+|++++|
T Consensus 1 ~ki~v~-G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIII-GSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence 688888 9999999999988888887777777666665555555554 4689999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHH-HHH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 81 LCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
+|+++..+......| ..+ ...++|+++++||+|+...... ..+....... .. . .+++.+||+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~----------~~--~-~~~~~~Sa~ 145 (161)
T cd04113 80 YDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREV-TFLEASRFAQ----------EN--G-LLFLETSAL 145 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccC-CHHHHHHHHH----------Hc--C-CEEEEEECC
Confidence 999875444332222 222 2347899999999998642110 0111111110 01 1 357889999
Q ss_pred ccCCcchHHHHHHh
Q psy11896 157 IDSGKTTLTERILF 170 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~ 170 (1043)
++.|++++++.+..
T Consensus 146 ~~~~i~~~~~~~~~ 159 (161)
T cd04113 146 TGENVEEAFLKCAR 159 (161)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999998874
No 310
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.44 E-value=4.8e-13 Score=135.74 Aligned_cols=152 Identities=18% Similarity=0.093 Sum_probs=106.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+|...+...+.+..+..+.+ .+.....+..++. .+.||||||+.+|...+..+++++|++++
T Consensus 1 ~~ki~i~-G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 1 EYKVVVL-GSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV 78 (163)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCch-hheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence 4788888 999999999988888888776655533 2333344555553 58899999999999999999999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCH-H-HHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADP-Y-RVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~-~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+.+.. ..+..+.. .++|+++|+||+|+..... . .....+... . . .++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~-------------~--~-~~~~~ 142 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEE-------------W--G-CPFME 142 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHH-------------h--C-CEEEE
Confidence 9999864332222 22222322 4789999999999854211 1 111111111 1 1 35689
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|+++++..++..
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 143 TSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred ecCCCCCCHHHHHHHHHHh
Confidence 9999999999999988754
No 311
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.44 E-value=4.3e-13 Score=136.38 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=111.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||+++..+...+.+..+..|.++.+.....+..++. .+.+|||||+.++...+..+++.+|++|+
T Consensus 3 ~~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 3 LFKIVLI-GDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 4788888 99999999999888888877777787777766666666664 68999999999999888999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|+++..+...... +..+.. .++|+++|+||+|+...... ..+....... .. ..+++++||
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~-~~~~~~~~~~----------~~---~~~~~~~Sa 147 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV-PTEEAKAFAE----------KN---GLSFIETSA 147 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccC-CHHHHHHHHH----------Hc---CCEEEEEEC
Confidence 999985433332221 122222 25899999999998642110 1111111110 01 135688999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|.|++++++.+...
T Consensus 148 ~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 148 LDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988753
No 312
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=2.9e-13 Score=144.33 Aligned_cols=155 Identities=13% Similarity=0.034 Sum_probs=110.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++|||++..++..+.+..+..|.+..+.....+..+ ..++.+|||||+.+|...+..+++.+|++|+
T Consensus 13 ~~Ki~vv-G~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 91 (219)
T PLN03071 13 SFKLVIV-GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (219)
T ss_pred ceEEEEE-CcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEE
Confidence 4788888 999999999998888888877766655544444444433 4589999999999999888889999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+|.++..+.+....| ..+. ..++|+++|+||+|+....... +.+ . +. . ... .+++.+||+
T Consensus 92 vfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~--~~~-~-~~---~------~~~---~~~~e~SAk 155 (219)
T PLN03071 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQV-T-FH---R------KKN---LQYYEISAK 155 (219)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCH--HHH-H-HH---H------hcC---CEEEEcCCC
Confidence 9999875444433222 2222 2468999999999985422110 111 1 10 0 011 245789999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 156 ~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 156 SNYNFEKPFLYLARKLA 172 (219)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999886554
No 313
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.44 E-value=1.3e-12 Score=133.37 Aligned_cols=114 Identities=19% Similarity=0.149 Sum_probs=77.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|.+|+|||||++++.... ... . .....|++... ..+.+++ ..+.+||||
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~--f~~------~-----------~~~t~~~~~~~--~~~~~~~~~~~l~l~D~~ 60 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDS--FNP------S-----------FISTIGIDFKI--RTIELDGKKIKLQIWDTA 60 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCc--CCc------c-----------cccCccceEEE--EEEEECCEEEEEEEEeCC
Confidence 35789999999999999999997321 000 0 00111222222 2233343 578999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH---hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~ 332 (1043)
|+.+|.......++.+|++++|+|+.++..-+...-|.. .. ..+.|+++|.||+|+.
T Consensus 61 g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 61 GQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred chHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999998888888899999999999987544333322322 22 2467999999999986
No 314
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.44 E-value=1.1e-12 Score=132.63 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=75.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+.++... .. ..+. +.-|.. ...+.++...+.+|||||+..|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~---------------~~~~---pt~g~~----~~~~~~~~~~~~l~D~~G~~~~ 57 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EI---------------VTTI---PTIGFN----VETVEYKNISFTVWDVGGQDKI 57 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CC---------------cccC---CCCCcc----eEEEEECCEEEEEEECCCCHhH
Confidence 5899999999999999999521 11 0110 111211 1234557788999999999998
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcc-hHHHHHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~-~~t~~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
......+++.+|++|+|+|+.+... .+....+..... .+.|++++.||+|+..
T Consensus 58 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 58 RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 8888888999999999999986321 112222322211 3589999999999864
No 315
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.44 E-value=1.4e-12 Score=133.30 Aligned_cols=111 Identities=20% Similarity=0.164 Sum_probs=74.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|++|+|||||+++|+...-.. . .....+.+. ....+.+.+ ..+++|||||+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~--------~-----------~~~t~~~~~--~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN--------Q-----------YKATIGADF--LTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc--------C-----------cCCccceEE--EEEEEEECCEEEEEEEEeCCChH
Confidence 69999999999999999997432100 0 000111111 112233443 467899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH--HH------hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ--MK------RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~--~~------~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++|+|+|+.+....+....|.. .. ..++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 61 RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 998888888999999999999987543332322322 11 1278999999999986
No 316
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.44 E-value=4.7e-13 Score=139.57 Aligned_cols=162 Identities=17% Similarity=0.107 Sum_probs=109.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|.......+.. .+. ..|..+....+.+++..+.+|||||+.++...+..+++.+|++++|+
T Consensus 19 ~~ki~il-G~~~~GKStLi~~l~~~~~-~~~--~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~ 94 (190)
T cd00879 19 EAKILFL-GLDNAGKTTLLHMLKDDRL-AQH--VPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLV 94 (190)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCC-ccc--CCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4688777 9999999999877766554 233 33566666778888899999999999999888999999999999999
Q ss_pred eCCCCCchh-HHH-HHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc----cccccCCCCccceeeee
Q psy11896 82 CAVGGVQSQ-TLT-VNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS----NESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 82 Da~~~~~~~-~~~-~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~----~~~l~~~~~~~~~~ii~ 152 (1043)
|+++.-... ... +...+. ..++|+++++||+|+...... +++++.++..-. ...+... .....++++
T Consensus 95 D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 170 (190)
T cd00879 95 DAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE---EELRQALGLYGTTTGKGVSLKVS-GIRPIEVFM 170 (190)
T ss_pred ECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH---HHHHHHhCccccccccccccccc-CceeEEEEE
Confidence 998532211 111 222221 246899999999998643222 233333221000 0000001 112246799
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999998754
No 317
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.44 E-value=1.5e-12 Score=137.19 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=75.6
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe---cCeeEEEEcCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW---KDHNINIIDTPGH 277 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDtPG~ 277 (1043)
+|+++|.+|+|||||+++|+... ... .....+..+.....+.+ ....+.+|||||+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~~~-------------------~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--FSQ-------------------HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC-------------------CCCCceeEEEEEEEEEECCCCEEEEEEEECCCc
Confidence 68999999999999999997321 100 00111111122222333 3467899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH-------hcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK-------RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~-------~~~~p~ivviNKiD~~ 332 (1043)
..|.......++.+|++|+|+|......-+....|.. +. ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 61 ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 9998888888999999999999987544333333321 11 2467999999999985
No 318
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.44 E-value=3.3e-13 Score=137.94 Aligned_cols=155 Identities=10% Similarity=-0.014 Sum_probs=108.9
Q ss_pred CccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.||+.++ |+.++||++...++..+.+. .+..|.+..+.....+.+++ ..+.+|||+|...+...+..+++.+|+++
T Consensus 4 ~~kv~~v-G~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 4 VFLCFVL-GAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred EEEEEEE-CCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 3788888 99999999999998888887 66666555444444555555 46899999999998888888899999999
Q ss_pred EEEeCCCCCchhHH-HHHHHHH-hcCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 79 LVLCAVGGVQSQTL-TVNRQMK-RYDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-~~~~~l~-~~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+|+++..+.... ..+..+. ..++|+++|+||+|+...... ...+.+.+.+ ....++++|
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---------------~~~~~~~~S 147 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKL---------------GLPPPLHFS 147 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHc---------------CCCCCEEEE
Confidence 99999764222221 2222221 236899999999998542211 1112222221 112347899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 148 a~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 148 SKLGDSSNELFTKLATAA 165 (169)
T ss_pred eccCccHHHHHHHHHHHh
Confidence 999999999999987643
No 319
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.44 E-value=5.2e-13 Score=135.80 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=108.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |.+++||||...+...+.+..+..|.++.+.....+..++ ..+++|||||+.++...+..+++.+|++|+|
T Consensus 1 ~ki~~v-G~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISM-GNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 477888 9999999999988888888877777776665555555544 5799999999999998888899999999999
Q ss_pred EeCCCCCchhHHHHH-HHHH----h----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMK----R----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~----~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+|+++..+......| ..+. . .+.|+++|+||+|+.... .......+... .. .+
T Consensus 80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~ 143 (168)
T cd04119 80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-------------KG---FK 143 (168)
T ss_pred EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-------------cC---Ce
Confidence 999864332222221 1121 1 357899999999986311 11111111111 11 35
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++.+||++|.|++++++.+...
T Consensus 144 ~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 144 YFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998754
No 320
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.44 E-value=2e-12 Score=129.51 Aligned_cols=110 Identities=20% Similarity=0.187 Sum_probs=83.2
Q ss_pred EEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-CeeEEEEcCCCCCCchH
Q psy11896 204 ISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVDFTV 282 (1043)
Q Consensus 204 ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDtPG~~df~~ 282 (1043)
++|++|+|||||+++|+...... ....++.|.........+. +..+.+|||||+.++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--------------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--------------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence 58999999999999997432211 1123445555555555554 77999999999887653
Q ss_pred -------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 283 -------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 283 -------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.....++.+|++++|+|+..................+.|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 61 LGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred chhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 345577999999999999998777777666677778999999999999874
No 321
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=5e-13 Score=158.02 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=120.6
Q ss_pred ccceeeeeecccccccCCccccC-CChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcch-----------HHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVM-DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF-----------TVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~-d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~-----------~~~~~~~ 70 (1043)
+|+.++ |..++||+|...+.+. +.......+|+|++.....+.+++..+.+|||||+.+. ......+
T Consensus 174 ~~v~iv-G~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~ 252 (435)
T PRK00093 174 IKIAII-GRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKA 252 (435)
T ss_pred eEEEEE-CCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHH
Confidence 577777 9999999998766554 33456778999999998888889999999999997531 1234567
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
++.+|++|+|+|++.+...++..++..+...++|+++|+||+|+.+.+ ..+++.+.+...+ ....+.++
T Consensus 253 ~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~---~~~~~~~~~~~~l--------~~~~~~~i 321 (435)
T PRK00093 253 IERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEK---TMEEFKKELRRRL--------PFLDYAPI 321 (435)
T ss_pred HHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHH---HHHHHHHHHHHhc--------ccccCCCE
Confidence 899999999999999999999999988888899999999999997322 1222332222111 12345688
Q ss_pred eeeeecccCCcchHHHHHHhh
Q psy11896 151 IGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+++||++|.|++++++.+...
T Consensus 322 ~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 322 VFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999888654
No 322
>KOG1423|consensus
Probab=99.44 E-value=3.7e-12 Score=133.58 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=90.0
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+.+++.+|+++|.+|+|||||+|.++...- +. ..++..+|.......+.-+..++.|.|
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv--------------~~------vS~K~~TTr~~ilgi~ts~eTQlvf~D 126 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKV--------------SA------VSRKVHTTRHRILGIITSGETQLVFYD 126 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCcc--------------cc------ccccccceeeeeeEEEecCceEEEEec
Confidence 4456788999999999999999999984321 11 233566788888888888899999999
Q ss_pred CCCCCC------------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh-cCCCeEEEEeccCCCC
Q psy11896 274 TPGHVD------------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 274 tPG~~d------------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~-~~~p~ivviNKiD~~~ 333 (1043)
|||.+. |......++..+|.+++|+|+.+.-..-.-.+++.+.+ .++|-++|+||+|...
T Consensus 127 TPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 127 TPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred CCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 999532 33446788999999999999996322223334444443 4789999999999874
No 323
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.44 E-value=6e-13 Score=134.52 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=100.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec-CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
|+.++ |..++||+|...+.....+. +..| |.......+... ...+.+|||||+..+...+..+++.+|++|+|+|
T Consensus 1 ~i~i~-G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLL-GLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEE-cCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 45666 99999999997777766553 2233 333333344443 4689999999999999889999999999999999
Q ss_pred CCCCCchhH--HHHHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGGVQSQT--LTVNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~~~~~~--~~~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++...... ..+...+. ..++|+++|+||+|+...... +++...+. ...+. .....+++++||++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~----~~~~~---~~~~~~~~~~Sa~~ 146 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTA---EEITRRFK----LKKYC---SDRDWYVQPCSAVT 146 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCH---HHHHHHcC----CcccC---CCCcEEEEeccccc
Confidence 986532111 12222222 147899999999998643211 22222211 00011 11123678999999
Q ss_pred cCCcchHHHHHHh
Q psy11896 158 DSGKTTLTERILF 170 (1043)
Q Consensus 158 g~Gi~~L~~~l~~ 170 (1043)
|.|++++++.+..
T Consensus 147 ~~gv~~~~~~i~~ 159 (160)
T cd04156 147 GEGLAEAFRKLAS 159 (160)
T ss_pred CCChHHHHHHHhc
Confidence 9999999998863
No 324
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.44 E-value=4.6e-13 Score=140.17 Aligned_cols=148 Identities=12% Similarity=0.011 Sum_probs=105.6
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV 87 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~ 87 (1043)
|+.++||+|...++..+.+..+..|.+..+.....+.++ ..++.||||||+.+|...+..+++.+|++|+|+|+++..
T Consensus 2 G~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~ 81 (200)
T smart00176 2 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARV 81 (200)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChH
Confidence 899999999998888888776666654444444444444 458999999999999999999999999999999999765
Q ss_pred chhHHHHHHH-HHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchH
Q psy11896 88 QSQTLTVNRQ-MKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 164 (1043)
Q Consensus 88 ~~~~~~~~~~-l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L 164 (1043)
+......|.. +.. .++|+++|+||+|+...... .+.+ . +. . ... ..++.+||++|.|++++
T Consensus 82 S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~--~~~~-~-~~---~------~~~---~~~~e~SAk~~~~v~~~ 145 (200)
T smart00176 82 TYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVK--AKSI-T-FH---R------KKN---LQYYDISAKSNYNFEKP 145 (200)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCC--HHHH-H-HH---H------HcC---CEEEEEeCCCCCCHHHH
Confidence 5444333322 333 46899999999998542211 0111 1 10 0 011 34578999999999999
Q ss_pred HHHHHhhcc
Q psy11896 165 TERILFYTG 173 (1043)
Q Consensus 165 ~~~l~~~l~ 173 (1043)
++.+...+.
T Consensus 146 F~~l~~~i~ 154 (200)
T smart00176 146 FLWLARKLI 154 (200)
T ss_pred HHHHHHHHH
Confidence 999986553
No 325
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.43 E-value=4.3e-13 Score=136.53 Aligned_cols=153 Identities=13% Similarity=0.033 Sum_probs=104.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEE--ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~--~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |..++||++...++..+.+..+..|.+.... ...+. .....+.+|||||+.++...+..+++.+|++|+|
T Consensus 2 ~kv~~v-G~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVF-GAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 788888 9999999999988888887665555332111 12222 2345799999999999998888899999999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh------cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQT-LTVNRQMKR------YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~-~~~~~~l~~------~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|.++..+... ...+..+.. .++|+++|+||+|+........ +.... +. .... .+++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-~~~~~-~~---------~~~~---~~~~e~ 145 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS-NEGAA-CA---------TEWN---CAFMET 145 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH-HHHHH-HH---------HHhC---CcEEEe
Confidence 99986544332 223333332 4689999999999864211000 11111 10 0011 245889
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+..+
T Consensus 146 SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 146 SAKTNHNVQELFQELLNL 163 (165)
T ss_pred ecCCCCCHHHHHHHHHhc
Confidence 999999999999998754
No 326
>KOG0394|consensus
Probab=99.43 E-value=1.3e-13 Score=134.10 Aligned_cols=159 Identities=18% Similarity=0.059 Sum_probs=120.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+.|++|. ||+++||+|.+..++-..+.......+..+.....+..++. .+.||||+|+++|.+.-...+|.||++++
T Consensus 9 lLKViiL-GDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 9 LLKVIIL-GDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred ceEEEEe-CCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 5688877 99999999999999999999999998888888888887765 58999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-----HHHHh---cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLTVN-----RQMKR---YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-----~~l~~---~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|.|....-+......| .+... ..-|+|++.||+|+.... ........+. |... ....+.
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~----WC~s--------~gnipy 155 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQT----WCKS--------KGNIPY 155 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHH----HHHh--------cCCcee
Confidence 9998854444443333 33321 235899999999996522 2111112221 2211 223466
Q ss_pred eeeeecccCCcchHHHHHHhhcc
Q psy11896 151 IGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+.+|||.+.|+++.++.+++..-
T Consensus 156 fEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 156 FETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred EEecccccccHHHHHHHHHHHHH
Confidence 78999999999999999887643
No 327
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.43 E-value=7.2e-13 Score=134.76 Aligned_cols=153 Identities=11% Similarity=0.070 Sum_probs=104.7
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~ 84 (1043)
+.++ |+.++||++...++..+.+..+..|.+.. ....+..++.++.+|||||+.++...+..+++.+|++|+|+|++
T Consensus 2 i~iv-G~~~vGKTsli~~~~~~~~~~~~~pt~g~--~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVL-GLDGAGKTSLLHSLSSERSLESVVPTTGF--NSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEE-CCCCCCHHHHHHHHhcCCCcccccccCCc--ceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 3455 99999999998888877776666664443 34556677889999999999999999999999999999999998
Q ss_pred CCCchhH-HH-HHHHHH-hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc----
Q psy11896 85 GGVQSQT-LT-VNRQMK-RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI---- 157 (1043)
Q Consensus 85 ~~~~~~~-~~-~~~~l~-~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~---- 157 (1043)
+...... .. +...+. ..++|+++|+||+|+...... +.+...+. ...+.... ...++++||++
T Consensus 79 ~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~----~~~~~~~~---~~~~~~~Sa~~~~s~ 148 (164)
T cd04162 79 DSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSV---QEIHKELE----LEPIARGR---RWILQGTSLDDDGSP 148 (164)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCH---HHHHHHhC----ChhhcCCC---ceEEEEeeecCCCCh
Confidence 6432221 11 222222 257899999999998654321 22222211 00111111 13456778777
Q ss_pred --cCCcchHHHHHHh
Q psy11896 158 --DSGKTTLTERILF 170 (1043)
Q Consensus 158 --g~Gi~~L~~~l~~ 170 (1043)
++|++++++.+.+
T Consensus 149 ~~~~~v~~~~~~~~~ 163 (164)
T cd04162 149 SRMEAVKDLLSQLIN 163 (164)
T ss_pred hHHHHHHHHHHHHhc
Confidence 9999999998764
No 328
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.43 E-value=2.9e-12 Score=129.40 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=73.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|.+|+|||||+++|+... ... . +. +..+.+ ....+..++ ..+++|||||+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~~------~--------~~---~t~~~~---~~~~~~~~~~~~~~~i~Dt~G~ 59 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FVD------E--------YD---PTIEDS---YRKQVVIDGETCLLDILDTAGQ 59 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CcC------C--------cC---Ccchhe---EEEEEEECCEEEEEEEEECCCC
Confidence 369999999999999999997321 100 0 00 000101 111223333 56889999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHH----HhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~----~~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|..+....+.... +... ...++|+++|.||+|+.
T Consensus 60 ~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 60 EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999988899999999999999986433222221 1222 23478999999999976
No 329
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.43 E-value=2.2e-12 Score=129.44 Aligned_cols=109 Identities=21% Similarity=0.147 Sum_probs=76.5
Q ss_pred EEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch
Q psy11896 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 281 (1043)
Q Consensus 202 i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~ 281 (1043)
|+++|+.|+|||||+++|....-.. ++ .+ |+........+++..+.+|||||+..|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~----------------~~-----~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 58 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE----------------DT-----IP--TVGFNMRKVTKGNVTLKVWDLGGQPRFR 58 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc----------------Cc-----cC--CCCcceEEEEECCEEEEEEECCCCHhHH
Confidence 7999999999999999996431100 00 11 1112222345567889999999999999
Q ss_pred HHHHHHhHhcCeEEEEEeCCCCcc-hHHHHHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 282 VEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 282 ~e~~~~l~~~D~~ilVvda~~g~~-~~t~~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
..+..+++.+|++++|+|+.+.-. .+....+.... ..++|+++|+||+|...
T Consensus 59 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 59 SMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 888999999999999999986322 22222233322 24789999999999864
No 330
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.43 E-value=2.8e-12 Score=130.33 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=76.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|.+|+|||||+++|+...-.. +..+.++.......+..++ ..+.+|||||
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 61 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL---------------------DSKSTIGVEFATRSIQIDGKTIKAQIWDTAG 61 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCccceEEEEEEEEECCEEEEEEEEeCCC
Confidence 4689999999999999999997321110 0011222222223334444 5789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+..|.......++.+|++|+|+|+.+....+...-| ..+.+ .++|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 62 QERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred hHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 998888888888999999999999864433332223 22222 358999999999975
No 331
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.43 E-value=2.4e-12 Score=131.08 Aligned_cols=113 Identities=18% Similarity=0.090 Sum_probs=76.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
+.+|+++|.+|+|||||+++++...-.. .....++.......+..+ ...+.+|||||
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 60 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE---------------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAG 60 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCccceeEEEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997321100 001111222222223333 35789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~ 332 (1043)
+.+|.......++.+|++|+|+|+.+.-.-.....|. .... .++|++++.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 61 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred cHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 9999888888899999999999998743322222222 2222 468999999999975
No 332
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.43 E-value=1.3e-12 Score=132.26 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=74.3
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+++|+...-.- ++.+.. +... ........+...+.+|||||+.+|
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~----------------~~~~~~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~ 61 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE----------------DYEPTK---ADSY-RKKVVLDGEDVQLNILDTAGQEDY 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc----------------ccCCcc---hhhE-EEEEEECCEEEEEEEEECCChhhh
Confidence 69999999999999999997322100 000000 0000 011122233467999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcch-----HHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQS-----QTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~-----~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
......+++.+|++++|+|....-.. ....+++.....++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 62 AAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 99999999999999999998763221 111112221235799999999999763
No 333
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.43 E-value=7e-13 Score=133.80 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=104.3
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
|+.++ |..++||++...+..... ..+..+ |.......+.+.+..+.+|||||+..+...+...++.+|++++|+|+
T Consensus 1 ki~ii-G~~~~GKssli~~~~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILIL-GLDGAGKTTILYKLKLGE-VVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEE-cCCCCCHHHHHHHHhcCC-CCCCCC--CcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 56777 999999999976666555 333333 44444556677788999999999999998999999999999999999
Q ss_pred CCCCchh-HHHHHHHH----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~~~~~-~~~~~~~l----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
+.+.... ....+..+ ...+.|+++|+||+|+...... +++.+.+.. .. ......+++++||++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~-------~~-~~~~~~~~~~~Sa~~~ 145 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV---SELIEKLGL-------EK-ILGRRWHIQPCSAVTG 145 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH---HHHHHhhCh-------hh-ccCCcEEEEEeeCCCC
Confidence 8642211 11222222 2357899999999998753311 222222210 00 0112357889999999
Q ss_pred CCcchHHHHHHh
Q psy11896 159 SGKTTLTERILF 170 (1043)
Q Consensus 159 ~Gi~~L~~~l~~ 170 (1043)
.|++++++.+..
T Consensus 146 ~gv~~~~~~l~~ 157 (158)
T cd00878 146 DGLDEGLDWLLQ 157 (158)
T ss_pred CCHHHHHHHHhh
Confidence 999999998863
No 334
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.43 E-value=1.6e-12 Score=151.55 Aligned_cols=114 Identities=21% Similarity=0.201 Sum_probs=89.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
-.+|+++|++|+|||||+|+|+.....+ .....|+|.+.....+.++++.+++|||||+.
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~ai--------------------vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~ 262 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAI--------------------VSDIKGTTRDVVEGDFELNGILIKLLDTAGIR 262 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc--------------------cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcc
Confidence 3579999999999999999998543221 12256788887777888999999999999997
Q ss_pred CchHHH--------HHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEV--------ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~--------~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++...+ ..+++.+|++++|+|+..+...... .+..+...+.|+++|+||+|+..
T Consensus 263 ~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 263 EHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred cchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 765432 3567889999999999987765554 45555556899999999999864
No 335
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.43 E-value=2.4e-12 Score=132.38 Aligned_cols=110 Identities=17% Similarity=0.111 Sum_probs=77.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+.++... .. .++ .+ |+........+++..+.+|||||+.+
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~--~~---------------~~~---~~----t~~~~~~~~~~~~~~l~l~D~~G~~~ 69 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLG--ES---------------VTT---IP----TIGFNVETVTYKNISFTVWDVGGQDK 69 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcC--CC---------------CCc---CC----ccccceEEEEECCEEEEEEECCCChh
Confidence 67999999999999999999521 10 000 01 11112223456788999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++|+|+|+++.- .......+..+. ..++|+++|.||+|+.+
T Consensus 70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 9888888899999999999998632 122233333332 23579999999999864
No 336
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.43 E-value=5.2e-13 Score=137.04 Aligned_cols=157 Identities=11% Similarity=0.070 Sum_probs=109.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|....++.+.+..+..|.+.... ...+..++ .++.||||+|+.++...+..+++++|++|+|
T Consensus 2 ~kivv~-G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 2 IKCVTV-GDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred eEEEEE-CCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 588888 9999999999999999999888777553332 22344444 5799999999999999888999999999999
Q ss_pred EeCCCCCchhHH-H-HHHHHHh--cCCCEEEEEecCCCCCCCHH--------HHHHHHHHhhhhccccccccCCCCccce
Q psy11896 81 LCAVGGVQSQTL-T-VNRQMKR--YDVPCIAFINKLDRLGADPY--------RVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 81 vDa~~~~~~~~~-~-~~~~l~~--~~~piilvlNKiDl~~~~~~--------~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
+|.++..+.+.. . .+..+.. .+.|+++|+||+|+.+.... ....+....+. ... ...
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a---------~~~--~~~ 148 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR---------KQI--GAA 148 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH---------HHc--CCC
Confidence 999875554443 2 2233332 36899999999999542100 00011111110 001 112
Q ss_pred eeeeeeecccCCcchHHHHHHhhc
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
..+.+||++|.|++++++.++...
T Consensus 149 ~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 149 AYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEEECCCCcccCHHHHHHHHHHHH
Confidence 357899999999999999998653
No 337
>PTZ00369 Ras-like protein; Provisional
Probab=99.43 E-value=1.4e-12 Score=136.07 Aligned_cols=113 Identities=17% Similarity=0.156 Sum_probs=76.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++++...-. . .+ ....+.+. .....+..+...+++|||||+.+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~--~--------------~~---~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 65 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI--D--------------EY---DPTIEDSY-RKQCVIDEETCLLDILDTAGQEE 65 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--c--------------Cc---CCchhhEE-EEEEEECCEEEEEEEEeCCCCcc
Confidence 68999999999999999999742110 0 00 00011111 11122333446788999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HH----HhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~----~~~~~p~ivviNKiD~~ 332 (1043)
|......+++.+|++++|+|+.+...-.....|. .. ...++|+++|.||+|+.
T Consensus 66 ~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 66 YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9998888999999999999998754322222222 22 22378999999999975
No 338
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.43 E-value=6.2e-13 Score=136.61 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=106.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+++..+...+.+..+..|.+. +.....+..++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 2 ~ki~ii-G~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 2 IKCVVV-GDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 588888 9999999999988888888777766542 22222334444 5789999999999988888899999999999
Q ss_pred EeCCCCCchhHH-HHH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|+++.-+.+.. ..| ..+.. .+.|+++|+||+|+.+... ..+.+.+.....+.. ..+. ...+..+++.+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~ 155 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLEC 155 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChh--hHHHHhhccCCCCCHHHHHHHH--HHcCCcEEEEe
Confidence 999865443333 122 22222 3689999999999954211 111111110000000 0000 01122356889
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.++.
T Consensus 156 Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 156 SALTQKGLKTVFDEAIR 172 (174)
T ss_pred cccccCCHHHHHHHHHH
Confidence 99999999999998874
No 339
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.43 E-value=1.1e-12 Score=133.59 Aligned_cols=113 Identities=20% Similarity=0.187 Sum_probs=75.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+++++... ... . .....++.+.........+...+.+|||||+.+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~------~-----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--FEK------K-----------YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC------C-----------CCCceeeEEEEEEEEECCEEEEEEEEECCCChhh
Confidence 69999999999999999997321 100 0 0011122222111122234568999999999998
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++|+|+|..++...+....| ..+.+ .++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 63 GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 87777788999999999999976554444333 22222 269999999999985
No 340
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.43 E-value=1.2e-12 Score=134.08 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=78.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|+.|+|||||+++|....... .....|.+ ...+.+.+..+.+|||||+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~--------------------~~~t~g~~----~~~i~~~~~~~~~~D~~G~~ 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH--------------------ITPTQGFN----IKTVQSDGFKLNVWDIGGQR 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc--------------------cCCCCCcc----eEEEEECCEEEEEEECCCCH
Confidence 4679999999999999999996321100 01122222 22345678899999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcc-hHHHHHH----HHHHhcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVN----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~-~~t~~~~----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+|...+...++.+|++++|+|+.+... ......+ ......++|+++++||+|+..
T Consensus 70 ~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 70 AIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 988888888899999999999986321 1112222 222345789999999999864
No 341
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.43 E-value=1.7e-12 Score=132.00 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=75.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+...-.. . ....-|.+.......+......+++|||||+.+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~------------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-K------------------YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY 62 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-C------------------CCCccceeEEEEEEEECCeEEEEEEEECCccHHH
Confidence 69999999999999999997322100 0 0001111122222223334568899999999888
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh--------cCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR--------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~--------~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++|+|+|..+....+....|. .+.+ .+.|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 63 LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 877777889999999999998753333332332 2211 457999999999975
No 342
>PRK12288 GTPase RsgA; Reviewed
Probab=99.42 E-value=1.4e-12 Score=146.87 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=98.0
Q ss_pred hhhcCEEEEEEeCCCCCchhHHH-HHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLT-VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~-~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
..++|.+++|++........... .+..+...++|.++|+||+|+.............+.+. ... .+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~------------~~g-~~ 184 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYR------------NIG-YR 184 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHH------------hCC-Ce
Confidence 46799999999977555443332 23334567899999999999975322112222222211 011 36
Q ss_pred eeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceee
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEM 229 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~ 229 (1043)
++.+||+++.|+++|++.+.. ..++++|.+|+|||||+|+|+..... ..
T Consensus 185 v~~vSA~tg~GideL~~~L~~-----------------------------ki~~~vG~sgVGKSTLiN~Ll~~~~~--~t 233 (347)
T PRK12288 185 VLMVSSHTGEGLEELEAALTG-----------------------------RISIFVGQSGVGKSSLINALLPEAEI--LV 233 (347)
T ss_pred EEEEeCCCCcCHHHHHHHHhh-----------------------------CCEEEECCCCCCHHHHHHHhccccce--ee
Confidence 789999999999999988752 12789999999999999999843221 22
Q ss_pred eeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 230 HEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 230 ~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+.+... ..+-+.+|.......+..++ .||||||...|
T Consensus 234 ~~is~~-----------~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 234 GDVSDN-----------SGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred ccccCc-----------CCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 222221 22345567666665554333 49999998765
No 343
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.42 E-value=8.6e-13 Score=134.77 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=103.8
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-eEEEEeCCCCc-------chHHHHHHHhhhcCE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHV-------DFTVEVERALRVLDG 76 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~-------~~~~~~~~~~~~aD~ 76 (1043)
+.++ |..++||+|...............+++|+++..+.+.+++. ++.||||||+. .+...+...++.+|+
T Consensus 3 v~iv-G~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 3 VGLV-GLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred eEEE-CCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 4556 99999999996665543333345678899998888888887 99999999974 244555566778999
Q ss_pred EEEEEeCCCC-CchhHH-HHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 77 AILVLCAVGG-VQSQTL-TVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 77 iIlVvDa~~~-~~~~~~-~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+++|+|+++. -..+.. .....+.. .++|+++|+||+|+.+.... .+.+..... . ....+
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~--~~~~~~~~~----~--------~~~~~ 147 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL--FELLKELLK----E--------LWGKP 147 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh--HHHHHHHHh----h--------CCCCC
Confidence 9999999875 222222 22223322 36899999999998653221 112221111 0 01235
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++++||+++.|++++++.+...
T Consensus 148 ~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 148 VFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 7899999999999999988753
No 344
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.42 E-value=3.1e-12 Score=129.99 Aligned_cols=111 Identities=22% Similarity=0.186 Sum_probs=74.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
.+|+++|.+|+|||||+++++.. .... ....++.......+..+ ...+++|||||+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVE--------------------KYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 59 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCc--------------------ccCCcchheEEEEEEECCEEEEEEEEECCCc
Confidence 36999999999999999999721 1100 00011111111223334 456789999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH----HhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~----~~~~~p~ivviNKiD~~ 332 (1043)
..|.......++.+|++++|+|.......+... .+... ...++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 60 EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 999998888999999999999987643332222 22222 22568999999999975
No 345
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=7e-13 Score=145.10 Aligned_cols=112 Identities=37% Similarity=0.619 Sum_probs=106.5
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 99 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~ 99 (1043)
...+..|.+..|+++|+++......|+++++.++|+|||||.||...+.+.+..+|.+|.|+|+..|+..|+..+++.++
T Consensus 51 ~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcr 130 (528)
T COG4108 51 GKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCR 130 (528)
T ss_pred CcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHh
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 100 RYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 100 ~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
..++|++-++||+|+...++-++++++.+.++
T Consensus 131 lR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~ 162 (528)
T COG4108 131 LRDIPIFTFINKLDREGRDPLELLDEIEEELG 162 (528)
T ss_pred hcCCceEEEeeccccccCChHHHHHHHHHHhC
Confidence 99999999999999998899999999998774
No 346
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.42 E-value=7.4e-13 Score=134.25 Aligned_cols=151 Identities=15% Similarity=0.040 Sum_probs=108.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |++++||+|...++....+..+..|.++.+.....+..++ .++.+|||||+.++...+..+++.+|++++|
T Consensus 1 ~ki~vv-G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLI-GDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 578888 9999999999988888877766666666555555566655 4689999999999998899999999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|.++.-+.....- +..+.. .+.|+++|.||.|+.+... .+....+.+. +. .+++++|
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~-------------~~---~~~~e~S 143 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE-------------YG---MDFFETS 143 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH-------------cC---CEEEEEe
Confidence 99886433322221 121222 3579999999999864321 1111222211 11 2458899
Q ss_pred ecccCCcchHHHHHHh
Q psy11896 155 AHIDSGKTTLTERILF 170 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~ 170 (1043)
|++|.|++++++.+..
T Consensus 144 a~~~~~v~~~f~~l~~ 159 (161)
T cd04117 144 ACTNSNIKESFTRLTE 159 (161)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999998874
No 347
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.42 E-value=1.3e-12 Score=148.18 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=79.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG 276 (1043)
...+|+++|++|+|||||+|+|+.... + .....+.|.+.....+.+ ++..+.||||||
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~--------------------v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G 246 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-Y--------------------AADQLFATLDPTTRRLDLPDGGEVLLTDTVG 246 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-e--------------------eccCCccccCCEEEEEEeCCCceEEEEecCc
Confidence 456899999999999999999974321 1 112345566665566666 568999999999
Q ss_pred CC-CchHH-------HHHHhHhcCeEEEEEeCCCCcchHHH----HHHHHHHhcCCCeEEEEeccCCC
Q psy11896 277 HV-DFTVE-------VERALRVLDGAILVLCAVGGVQSQTL----TVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~-df~~e-------~~~~l~~~D~~ilVvda~~g~~~~t~----~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+. +...+ +...+..+|++++|+|+.+....... .++..+...+.|+++|+||+|+.
T Consensus 247 ~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 247 FIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 83 22222 23346889999999999976544332 22333333478999999999985
No 348
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=6.5e-13 Score=135.55 Aligned_cols=155 Identities=16% Similarity=0.031 Sum_probs=107.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
++|+.++ |.+++||+|...............++++.+.....+.+.+ ..+.+|||||+.++...+..+++.+|++++
T Consensus 7 ~~~v~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 7 LFKIVLI-GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4788888 9999999999777665555545555555556556666666 458899999999999988999999999999
Q ss_pred EEeCCCCCchhHHHHH----HHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~----~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|++++.+......| +.+...+.|+++|+||+|+..... ....+.+.+.. .....++.+||
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~--i~~~~~~~~~~------------~~~~~~~~~Sa 151 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE--VSQQRAEEFSD------------AQDMYYLETSA 151 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc--cCHHHHHHHHH------------HcCCeEEEeeC
Confidence 9999865433222222 222234689999999999864221 11111111110 01135688999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|.|++++++.+...
T Consensus 152 ~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 152 KESDNVEKLFLDLACR 167 (169)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998753
No 349
>KOG0466|consensus
Probab=99.42 E-value=5.4e-13 Score=138.66 Aligned_cols=239 Identities=19% Similarity=0.228 Sum_probs=164.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-c----------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-K---------- 265 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~---------- 265 (1043)
+-..||+-+||+-+||||++.++.. .. +=....|-+|.||++..+..... +
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSG---v~---------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~ 97 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISG---VH---------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPRPG 97 (466)
T ss_pred eeeeeecceeccccCcceeeeeecc---ce---------------EEEehhhhhcceeEEeccccceEEecCCCCCCCcc
Confidence 3457999999999999999988841 11 11233567888888877654321 0
Q ss_pred --------------------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-CcchHHHHHHHHHHhc
Q psy11896 266 --------------------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRY 318 (1043)
Q Consensus 266 --------------------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-g~~~~t~~~~~~~~~~ 318 (1043)
-..+.|+|+|||.-+...|..+....|++++++.+.+ ..++||.+++....-.
T Consensus 98 cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM 177 (466)
T KOG0466|consen 98 CYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM 177 (466)
T ss_pred hhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh
Confidence 0468899999998888999999999999999999985 6899999998877777
Q ss_pred CCC-eEEEEeccCCCCCCH-HHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHH
Q psy11896 319 DVP-CIAFINKLDRLGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK 396 (1043)
Q Consensus 319 ~~p-~ivviNKiD~~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~ 396 (1043)
++. ++++-||+|+...+. .+..+++.+.+.
T Consensus 178 ~LkhiiilQNKiDli~e~~A~eq~e~I~kFi~------------------------------------------------ 209 (466)
T KOG0466|consen 178 KLKHIIILQNKIDLIKESQALEQHEQIQKFIQ------------------------------------------------ 209 (466)
T ss_pred hhceEEEEechhhhhhHHHHHHHHHHHHHHHh------------------------------------------------
Confidence 775 556669999874321 111222222111
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCC
Q psy11896 397 KEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEV 476 (1043)
Q Consensus 397 ~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~ 476 (1043)
+. . ..--|++..||.-..+++.+.++|++++|-|...
T Consensus 210 ---------------------------~t--------------~--ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd 246 (466)
T KOG0466|consen 210 ---------------------------GT--------------V--AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD 246 (466)
T ss_pred ---------------------------cc--------------c--cCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence 10 0 0113778889999999999999999999999532
Q ss_pred CccccccCcccceeeeCCCCCCCCCcEEEEEeeeec--C-------CccEEEEEEecCeecCCCEEEecCC------CcE
Q psy11896 477 TNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG--K-------FGQLTYMRCYQGKLRKGEMIYNVRT------DKK 541 (1043)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d--~-------~G~i~~~RV~sGtl~~gd~v~~~~~------~~~ 541 (1043)
...|..+.|.+.+.. | .|-++-+-+..|.|+.||.+.+-+. +..
T Consensus 247 ---------------------f~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~ 305 (466)
T KOG0466|consen 247 ---------------------FTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGN 305 (466)
T ss_pred ---------------------cCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCc
Confidence 334445555555432 1 1668889999999999999986431 111
Q ss_pred E-------EeceEEEeccCCeeecCeecCCCEEEE
Q psy11896 542 V-------RVSRLVRLHSNEMEDVEEVLAGDIFAL 569 (1043)
Q Consensus 542 ~-------ki~~l~~~~g~~~~~v~~a~aGdIv~i 569 (1043)
. +|..+| .+..+++.|.+|-.+++
T Consensus 306 ~~C~Pi~SrI~sL~----AE~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 306 IKCRPIFSRIVSLF----AEQNDLQFAVPGGLIGV 336 (466)
T ss_pred EEEeeHHHHHHHHH----hhhccceeecCCceeee
Confidence 1 233333 44556778888887766
No 350
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.42 E-value=1.6e-12 Score=135.69 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=73.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||++++......... +. ...+.+.......+......++||||||+.+|
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~------------~~------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 63 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN------------FI------ATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF 63 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC------------cC------CcccceeEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 6999999999999999999633211100 00 01111111111222223367899999999998
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++|+|+|+......+....| ..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 64 RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 88888888999999999999864332222222 2222 2467999999999975
No 351
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.42 E-value=1e-12 Score=134.22 Aligned_cols=156 Identities=15% Similarity=0.012 Sum_probs=108.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||+++..+...........+.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 4 ~~ki~vv-G~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 4 LFKYIII-GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 4789999 9999999999888777666655555445555445555554 479999999999999889999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+|+++..+.+....| ..+.. .++|+++|+||+|+...... ..++...... . . ..+++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~----~------~---~~~~~e~Sa 148 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREV-SYEEGEAFAK----E------H---GLIFMETSA 148 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCC-CHHHHHHHHH----H------c---CCEEEEEeC
Confidence 9999864333332222 22222 36899999999998632110 0111111111 0 1 124688999
Q ss_pred cccCCcchHHHHHHhhc
Q psy11896 156 HIDSGKTTLTERILFYT 172 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l 172 (1043)
+++.|+++++..+...+
T Consensus 149 ~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 149 KTASNVEEAFINTAKEI 165 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887543
No 352
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.42 E-value=8.4e-13 Score=133.84 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=111.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |.+++||+|...+...........+.++.+.....+.+++ .++.+|||||+.++...+..+++.+|++|+|
T Consensus 1 ~kv~v~-G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILI-GDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 578888 9999999999888877777666666666666556666665 5789999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+.+....| ..+.. .++|+++|+||+|+.... ..+....+.+. .. .+++++|
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~-------------~~---~~~~e~S 143 (164)
T smart00175 80 YDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEE-------------HG---LPFFETS 143 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHH-------------cC---CeEEEEe
Confidence 999864443332222 22222 468999999999986421 11111222111 11 2478999
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 144 a~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 144 AKTNTNVEEAFEELAREI 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 353
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.42 E-value=3.5e-12 Score=131.85 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=77.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..++|||||+.++... .. .. ..+..|.+ ...+.+++..+++|||||+..
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~--~~---------------~~---~~pt~g~~----~~~~~~~~~~~~i~D~~Gq~~ 73 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLG--EI---------------VT---TIPTIGFN----VETVEYKNISFTVWDVGGQDK 73 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccC--CC---------------cc---ccCCccee----EEEEEECCEEEEEEECCCCHH
Confidence 57999999999999999999521 11 00 01111222 223567788999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHH-H---hcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM-K---RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~-~---~~~~p~ivviNKiD~~~~ 334 (1043)
|.......++.+|++|+|+|+.+...-. ....+... . ..++|+++|.||+|+...
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 9888888899999999999998643221 11122222 1 136899999999998643
No 354
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.42 E-value=2.7e-12 Score=134.58 Aligned_cols=117 Identities=20% Similarity=0.323 Sum_probs=80.5
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
+....++|+++|++|+|||||+++|+.... .. ......|.|....... + +..+.||||
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~------------------~~~~~~~~t~~~~~~~--~-~~~l~l~Dt 77 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKN-LA------------------RTSKTPGRTQLINFFE--V-NDKLRLVDL 77 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-cc------------------cccCCCCceeEEEEEe--c-CCeEEEeCC
Confidence 344678899999999999999999974210 00 0112334554433322 2 468999999
Q ss_pred CCCCC----------chHHHHHHhHh---cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 275 PGHVD----------FTVEVERALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~d----------f~~e~~~~l~~---~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
||+.. |...+...++. ++++++|+|+..+.......+++.+...++|+++++||+|+..
T Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 78 PGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred CCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 99632 32333344443 4678889999888777776777777778999999999999863
No 355
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.42 E-value=9.1e-13 Score=138.55 Aligned_cols=157 Identities=15% Similarity=0.027 Sum_probs=110.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||||+........+..+..|.++.+.....+.+++ ..+.||||||+..+...+..+++.+|++++
T Consensus 6 ~~kivvv-G~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 6 LFKLLII-GDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4788888 9999999999888877776666666555555555555555 468999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+|+++..+.+... .+..+.. ...|+++|+||+|+...... ..+....... ... .+++.+||+
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~-~~~~~~~~~~----------~~~---~~~~e~Sa~ 150 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVV-ETEDAYKFAG----------QMG---ISLFETSAK 150 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccccc-CHHHHHHHHH----------HcC---CEEEEEECC
Confidence 99998643333222 1222222 35789999999998643211 0111111110 011 357889999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+....-
T Consensus 151 ~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 151 ENINVEEMFNCITELVL 167 (199)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999887653
No 356
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.42 E-value=5.8e-13 Score=150.95 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=108.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe-cCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
+|+.++ |...+||+|.....+.........+++|+++....+.+ ++.++.||||||+.+ -...+...+..
T Consensus 190 ~~Valv-G~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ 268 (351)
T TIGR03156 190 PTVALV-GYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVRE 268 (351)
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHh
Confidence 678888 99999999998777776666678899999999998888 578999999999832 12234456889
Q ss_pred cCEEEEEEeCCCCCchhHHH----HHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 74 LDGAILVLCAVGGVQSQTLT----VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~----~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
||++++|+|++++....... ++..+...++|+++|+||+|+.... .. ..+.. ...+
T Consensus 269 ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~--~v-~~~~~-----------------~~~~ 328 (351)
T TIGR03156 269 ADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP--RI-ERLEE-----------------GYPE 328 (351)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH--hH-HHHHh-----------------CCCC
Confidence 99999999998765443322 2222223378999999999986421 11 11100 0124
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++++||++|.|+++|++.+...
T Consensus 329 ~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 329 AVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEEEEccCCCCHHHHHHHHHhh
Confidence 6889999999999999988653
No 357
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.42 E-value=2.4e-12 Score=131.52 Aligned_cols=115 Identities=18% Similarity=0.089 Sum_probs=79.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++++....... .....|.+..............+++|||||+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------------HDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-------------------CCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 46899999999999999999974321110 00122333332333233334578999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HHh---cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|+......+....|.. ... .+.|+++|.||+|+.
T Consensus 65 ~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 65 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 988888889999999999999986544444443432 222 368999999999975
No 358
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.42 E-value=2.6e-12 Score=130.17 Aligned_cols=111 Identities=20% Similarity=0.144 Sum_probs=73.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
.+|+++|.+|+|||||+++++... ... .+. .++.......+..+ ...+.+|||||+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~--------------~~~------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVE--------------KYD------PTIEDSYRKQIEVDGQQCMLEILDTAGT 59 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCc--------------ccC------CchhhhEEEEEEECCEEEEEEEEECCCc
Confidence 479999999999999999997321 100 000 00000111122233 356788999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHH----hcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~----~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|..+......... +.... ..++|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 60 EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9998888888899999999999986433222222 22222 2468999999999975
No 359
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=1.2e-12 Score=139.67 Aligned_cols=154 Identities=8% Similarity=-0.058 Sum_probs=108.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||++....++.+.++.+..|.+..+.. ..+..++ ..+.||||+|+++|......+++.+|++|+
T Consensus 13 ~~KIvvv-Gd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 13 RCKLVLV-GDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eEEEEEE-CCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 4788888 99999999999999888888877776544332 2344444 479999999999999988999999999999
Q ss_pred EEeCCCCCchhH-HHHH-HHHHh--cCCCEEEEEecCCCCCCCH--------------HHHHHHHHHhhhhccccccccC
Q psy11896 80 VLCAVGGVQSQT-LTVN-RQMKR--YDVPCIAFINKLDRLGADP--------------YRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~-~~l~~--~~~piilvlNKiDl~~~~~--------------~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
|+|.++..+... ...| ..+.. .+.|+++|+||+|+..... .+..+.+.+.
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~------------ 158 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ------------ 158 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH------------
Confidence 999987554443 2222 22332 3679999999999853100 0001111111
Q ss_pred CCCccceeeeeeeecccC-CcchHHHHHHhhc
Q psy11896 142 HKPIEYIRNIGISAHIDS-GKTTLTERILFYT 172 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~-Gi~~L~~~l~~~l 172 (1043)
. .....+.+||++|. |++++|..++...
T Consensus 159 -~--~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 159 -L--GAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred -c--CCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 1 11134679999998 8999999987654
No 360
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.42 E-value=1.1e-12 Score=134.17 Aligned_cols=154 Identities=18% Similarity=0.059 Sum_probs=108.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|+..+...+.+..+..+..+.+.....+.+++. ++.+|||||+..+...+..+++.+|++|+|
T Consensus 1 ~ki~vi-G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIIL-GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence 578888 99999999998777777666555555555555555566554 578999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHHH--HHHh------cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 81 LCAVGGVQSQTLTVNR--QMKR------YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~~--~l~~------~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
+|+++..+......|. .+.. .++|+++|+||+|+.... ..+....+.+. ....++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---------------~~~~~~ 144 (172)
T cd01862 80 YDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS---------------NGNIPY 144 (172)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH---------------cCCceE
Confidence 9998654322222221 1111 268999999999996321 11111222111 122467
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+++||++|.|++++++.+....
T Consensus 145 ~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 145 FETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999887543
No 361
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.41 E-value=3.2e-12 Score=129.98 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=77.9
Q ss_pred EEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch
Q psy11896 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 281 (1043)
Q Consensus 202 i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~ 281 (1043)
|+++|..|+|||||++++....... ++. +..|. ....+.+++..+.+|||||+.+|.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~----------------~~~---pt~g~----~~~~i~~~~~~l~i~Dt~G~~~~~ 58 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE----------------SVV---PTTGF----NSVAIPTQDAIMELLEIGGSQNLR 58 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc----------------ccc---ccCCc----ceEEEeeCCeEEEEEECCCCcchh
Confidence 7899999999999999997331100 000 11111 123456778899999999999999
Q ss_pred HHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH--hcCCCeEEEEeccCCCCC
Q psy11896 282 VEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK--RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 282 ~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~--~~~~p~ivviNKiD~~~~ 334 (1043)
.....+++.+|++|+|+|+.+....... ..+..+. ..++|+++|.||+|+...
T Consensus 59 ~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 59 KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 8888999999999999999874322221 2222222 257899999999998643
No 362
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.41 E-value=1.1e-12 Score=136.91 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=103.7
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
|+.++ |+.++||||...+...+.+.....|.++ +.....+..++. .+.||||||+.++...+..+++.+|++|+|+
T Consensus 1 ki~iv-G~~~vGKTsli~~l~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVL-GDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEE-CCCCCCHHHHHHHHHhCCCCccCCCchH-hhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 56677 9999999999887777766554444332 322333444444 5889999999999999999999999999999
Q ss_pred eCCCCCchhHHH-HHHHHHh------cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 82 CAVGGVQSQTLT-VNRQMKR------YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 82 Da~~~~~~~~~~-~~~~l~~------~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|.++..+..... .+..+.. .++|+++|+||+|+..... ......+... . . .+++.
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-------------~--~-~~~~e 142 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARR-------------L--G-CEFIE 142 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHH-------------h--C-CEEEE
Confidence 998654433322 2222322 3679999999999864211 1111111111 1 1 25688
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 143 ~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 143 ASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred ecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999986543
No 363
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.41 E-value=7.5e-13 Score=120.49 Aligned_cols=80 Identities=26% Similarity=0.401 Sum_probs=71.7
Q ss_pred cEEEEEeeeecC-C-ccEEEEEEecCeecCCCEEEecC---------CCcEEEeceEEEeccCCeeecCeecCCCEEEEc
Q psy11896 502 FIALAFKLEAGK-F-GQLTYMRCYQGKLRKGEMIYNVR---------TDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 570 (1043)
Q Consensus 502 ~~~~V~K~~~d~-~-G~i~~~RV~sGtl~~gd~v~~~~---------~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~ 570 (1043)
++++|||+.+++ + |+++|+|||||+|+.||.+++.. ...++++.+||.++|.+..++++|.|||||++.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 5 99999999999999999999876 334688999999999999999999999999999
Q ss_pred cC-ccccCcEEe
Q psy11896 571 GV-DCASGDTFV 581 (1043)
Q Consensus 571 gl-~~~~Gdtl~ 581 (1043)
|+ ++.+|+|-+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 99 677887753
No 364
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.41 E-value=6.8e-13 Score=148.86 Aligned_cols=150 Identities=20% Similarity=0.140 Sum_probs=118.1
Q ss_pred ccceeeeeecccccccCCccccCC-ChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcch--------HHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMD-SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF--------TVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d-~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~--------~~~~~~~~~~ 73 (1043)
+|+.|+ |.+.+||+|...++... ..=.-..||||||.....+..+|+.+.++||+|..+- .......++.
T Consensus 218 ~kvvIi-G~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ 296 (454)
T COG0486 218 LKVVII-GRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEE 296 (454)
T ss_pred ceEEEE-CCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHh
Confidence 688899 99999999987666553 3346788999999999999999999999999999742 2345678899
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
||.+++|+|++.+....+..++. ....++|+++|+||+|+...... ..+ . .....+++.+
T Consensus 297 ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~---~~~--~--------------~~~~~~~i~i 356 (454)
T COG0486 297 ADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIEL---ESE--K--------------LANGDAIISI 356 (454)
T ss_pred CCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccccc---chh--h--------------ccCCCceEEE
Confidence 99999999999877777777666 44567899999999999764321 111 0 0111257899
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
|+++|+|++.|.+.+.....
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred EecCccCHHHHHHHHHHHHh
Confidence 99999999999999987765
No 365
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.41 E-value=6.4e-13 Score=139.62 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=107.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
|+.++ |+.++||++...++..+.+..+. +.++.+.....+.+++ .++.||||||+.++...+..+++.+|++|+|+
T Consensus 1 kv~vv-G~~~vGKTsll~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFM-GAAGVGKTALIQRFLYDTFEPKY-RRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEE-CCCCCCHHHHHHHHHhCCCCccC-CCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 67777 99999999998888777765443 3344444555666666 57899999999999888888999999999999
Q ss_pred eCCCCCchhHHHHH-HHH----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~~~~-~~l----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..+......+ ..+ ...++|+++|+||+|+.........+...+... ..+ ..+++.+||+
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~---------~~~---~~~~~~~Sa~ 146 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE---------LDW---NCGFVETSAK 146 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH---------hhc---CCcEEEecCC
Confidence 99864333322211 122 224789999999999865311111111111110 001 1356789999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 147 ~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 147 DNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999988665
No 366
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.41 E-value=6.1e-13 Score=136.00 Aligned_cols=154 Identities=14% Similarity=0.016 Sum_probs=107.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||++.......+++..+..+.++.+.....+..++ ..+.||||||+.++...+..+++.+|++++
T Consensus 5 ~~ki~vv-G~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 5 LLKVILL-GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4688888 9999999999888888887776666555554444455554 468899999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHH-H------hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQM-K------RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l-~------~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
|+|.++..+.+....| ..+ . ..++|+++|+||+|+...... .+++.+... .....+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~------------~~~~~~~~ 149 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVS--TEEAQAWCR------------ENGDYPYF 149 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccC--HHHHHHHHH------------HCCCCeEE
Confidence 9998864433322222 111 1 135799999999998632110 112222111 01123568
Q ss_pred eeeecccCCcchHHHHHHh
Q psy11896 152 GISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~ 170 (1043)
++||++|.|++++++.+..
T Consensus 150 e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 150 ETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 8999999999999998874
No 367
>KOG0080|consensus
Probab=99.41 E-value=1.2e-13 Score=130.58 Aligned_cols=163 Identities=14% Similarity=0.081 Sum_probs=116.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |++++||+|....++.+++.++....+.+|.....+..++ .++.||||+|+++|...+.++++.|.++|+
T Consensus 11 t~KiLlI-GeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 11 TFKILLI-GESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eEEEEEE-ccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 4899999 9999999999999999999888777677777766666654 579999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHHH-HHh----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVNRQ-MKR----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~~-l~~----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|.|.+..-+....++|.. +.. .++-.++|.||+|..+.......+-+ .+.+.....| +.+|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~-----------kfAr~h~~LF---iE~S 155 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGL-----------KFARKHRCLF---IECS 155 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHH-----------HHHHhhCcEE---EEcc
Confidence 999986555555555543 221 23446799999997531100000111 0111122223 6699
Q ss_pred ecccCCcchHHHHHHhhcccccccc
Q psy11896 155 AHIDSGKTTLTERILFYTGRISEMH 179 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~~~~~~ 179 (1043)
|++.+|++..++.++.-.-+.+..+
T Consensus 156 Akt~~~V~~~FeelveKIi~tp~l~ 180 (209)
T KOG0080|consen 156 AKTRENVQCCFEELVEKIIETPSLW 180 (209)
T ss_pred hhhhccHHHHHHHHHHHHhcCcchh
Confidence 9999999988888775544433333
No 368
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.41 E-value=2.7e-12 Score=132.53 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=75.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE----------ecCe
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL----------WKDH 267 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----------~~~~ 267 (1043)
...+|+++|..|+|||||++++....-.- . .....|.........+. ....
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~--------~-----------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNP--------K-----------FITTVGIDFREKRVVYNSSGPGGTLGRGQRI 63 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCc--------c-----------CCCccceEEEEEEEEEcCccccccccCCCEE
Confidence 45789999999999999999996321100 0 00011111111111111 1236
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh----cCCCeEEEEeccCCC
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~ 332 (1043)
.+.||||||+.+|.......++.+|++++|+|+.+.-..+...-|. .... .+.|+++|.||+|+.
T Consensus 64 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 64 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 7899999999999888888999999999999998744333333332 2222 367899999999975
No 369
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.41 E-value=2.6e-12 Score=130.93 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=77.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+.+|+++|+.|+|||||++++.... ... + .....|.+.......+......+.+|||||+.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~--~~~--------------~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKK--FMA--------------D---CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCC--------------C---CCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 3579999999999999999997321 100 0 00011222222222222234578999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH---hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~ 332 (1043)
.|.......++.+|++|+|+|..+...-+....|.. .. ..+.|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 63 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999888889999999999999997544443333322 22 2457899999999985
No 370
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.41 E-value=2.8e-12 Score=130.63 Aligned_cols=112 Identities=20% Similarity=0.128 Sum_probs=76.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|+.|+|||||+++|.... ... . +.. .....++. ..+...+..+++|||||+.++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~------~-----~~~-----~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~ 60 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPE------N-----VPR-----VLPEITIP---ADVTPERVPTTIVDTSSRPQD 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCc------c-----CCC-----cccceEee---eeecCCeEEEEEEeCCCchhh
Confidence 68999999999999999997421 100 0 000 00011211 112235578999999999988
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHH-HHHH--hcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~-~~~~--~~~~p~ivviNKiD~~~ 333 (1043)
...+...++.+|++++|+|+.+....+.. ..| ..+. ..+.|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 61 RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 88788888999999999999876554442 223 2222 24789999999999864
No 371
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.41 E-value=1.1e-12 Score=133.42 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=91.5
Q ss_pred CEEEEEEeCCCCCchhHHHHHHH--HHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCC-----CCcc-
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQ--MKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEH-----KPIE- 146 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~--l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~-----~~~~- 146 (1043)
|++++|+|++.++...+..+.+. +...++|+|+|+||+|+.+ ... +..+.+.+........+... ....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~--~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP--KEN-VEKWLKYLRREFPTVAFKASTQSQKKNLGQ 77 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC--HHH-HHHHHHHHHhhCCEEEEEecccccccchhh
Confidence 79999999998887777777666 4456799999999999964 222 22222222111100000000 0000
Q ss_pred ------ceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHh
Q psy11896 147 ------YIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 147 ------~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll 220 (1043)
......+|+..+.|.+.|++.+..+... .......+++++|.+|+|||||+|+|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-------------------~~~~~~~~~~~vG~pnvGKSslin~l~ 138 (172)
T cd04178 78 KSVKVEAASADLLRSSVCFGADCLLKLLKNYSRN-------------------KDIKTSITVGVVGFPNVGKSSLINSLK 138 (172)
T ss_pred cccccchhhhhhhhhccccCHHHHHHHHHHHhhc-------------------cccccCcEEEEEcCCCCCHHHHHHHHh
Confidence 0111234555566666655555332210 001223569999999999999999997
Q ss_pred cccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 221 FYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 221 ~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
..... .....+|+|.......+ +..+.|+||||.
T Consensus 139 ~~~~~--------------------~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 139 RSRAC--------------------NVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred Ccccc--------------------eecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 43211 12335788876555433 346899999993
No 372
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.41 E-value=2.1e-12 Score=130.53 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=73.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG~~d 279 (1043)
+|+++|.+|+|||||++++....-. . .....|.++. ...+ +...+.+|||||+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~--~------------------~~~t~~~~~~----~~~~~~~~~l~i~D~~G~~~ 56 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV--T------------------TIPTVGFNVE----MLQLEKHLSLTVWDVGGQEK 56 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc--c------------------ccCccCcceE----EEEeCCceEEEEEECCCCHh
Confidence 4899999999999999999743210 0 0011122211 1222 357899999999998
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHH----HhcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~----~~~~~p~ivviNKiD~~~ 333 (1043)
|...+...++.+|++++|+|+.+..... ....+... ...+.|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 8888888899999999999998753211 11112221 125789999999999863
No 373
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.41 E-value=1e-12 Score=132.88 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=104.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |..++||++...+.....+..+..|..+.+.....+.+++ .++.+|||||+.++.......++.+|++++|
T Consensus 1 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLI-GDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence 688888 9999999999877776666554444444333333334443 5799999999999988888999999999999
Q ss_pred EeCCCCCchhHHHHH-HHH----HhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l----~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+.+....| ..+ ...+.|+++|+||+|+..... .+....+... . ..+++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-------------~---~~~~~~~S 143 (161)
T cd01863 80 YDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-------------H---NMLFIETS 143 (161)
T ss_pred EECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-------------c---CCEEEEEe
Confidence 998865443332222 212 234688999999999973321 1111111111 1 13578899
Q ss_pred ecccCCcchHHHHHHhh
Q psy11896 155 AHIDSGKTTLTERILFY 171 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~ 171 (1043)
|++|.|++++++.+.+.
T Consensus 144 a~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 144 AKTRDGVQQAFEELVEK 160 (161)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999988653
No 374
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.40 E-value=4.9e-12 Score=127.75 Aligned_cols=111 Identities=20% Similarity=0.117 Sum_probs=74.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe--cCeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW--KDHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~liDtPG~~ 278 (1043)
+|+++|..|+|||||+++|+....... ..+.++.......+.+ ....+++|||||+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEK---------------------HESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC---------------------cCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 799999999999999999974321100 0111111111122222 23478999999998
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH----HHhcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ----MKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~----~~~~~~p~ivviNKiD~~ 332 (1043)
.|.......++.+|++++|+|..++-..+....|.. ....++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred HHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 888877778899999999999987654433333322 122368999999999976
No 375
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.40 E-value=4e-12 Score=129.36 Aligned_cols=113 Identities=18% Similarity=0.123 Sum_probs=76.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|.+|+|||||+++++... ... . +.. .-+.+. .......++...+.+|||||+.+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~------~-----~~~------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRE------S-----YIP------TIEDTY-RQVISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCC------C-----cCC------cchheE-EEEEEECCEEEEEEEEECCCCCc
Confidence 469999999999999999997321 100 0 000 000111 11222334456899999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh------cCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~------~~~p~ivviNKiD~~ 332 (1043)
|......+++.+|++++|+|.......... ..+..... .++|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 62 FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 988888888999999999999875544332 22333322 468999999999975
No 376
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.40 E-value=4.7e-12 Score=132.78 Aligned_cols=111 Identities=23% Similarity=0.178 Sum_probs=78.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
.|+++|..|+|||||+.++.... .. .+....++.......+.+++ ..+++|||+|+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~-------------------~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FC-------------------EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CC-------------------CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 48899999999999999996321 10 01111122222223344554 678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHH-H---hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM-K---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~-~---~~~~p~ivviNKiD~~ 332 (1043)
+|......+++.+|++|+|+|..+..+-+....|... . ..+.|+++|.||+|+.
T Consensus 61 ~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 61 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999888999999999999999986555554444332 2 2468999999999975
No 377
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.40 E-value=4e-12 Score=130.10 Aligned_cols=113 Identities=20% Similarity=0.173 Sum_probs=78.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|+.|+|||||+++++... .. .+....+........+.+++ ..+++|||||
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~~-------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 60 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--FP-------------------ERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CC-------------------CccccceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence 4789999999999999999996211 00 01111122222223344444 6899999999
Q ss_pred CCCchH-HHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh----cCCCeEEEEeccCCC
Q psy11896 277 HVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~-e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~ 332 (1043)
+.+|.. .....++.+|++++|+|+.+....+....|. .+.. .++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 61 QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred hHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 998874 4566678999999999999876666665554 3332 358999999999975
No 378
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.40 E-value=2.7e-12 Score=131.74 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=74.9
Q ss_pred EEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-CeeEEEEcCCCCCC---
Q psy11896 204 ISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVD--- 279 (1043)
Q Consensus 204 ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDtPG~~d--- 279 (1043)
++|++|+|||||+++|..... ......++|+......+.++ +..+++|||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~---------------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 59 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP---------------------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGAS 59 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc---------------------cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhh
Confidence 579999999999999974321 01223456666666667777 89999999999743
Q ss_pred ----chHHHHHHhHhcCeEEEEEeCCCCc------chHH-HHHHHHHH----------hcCCCeEEEEeccCCCC
Q psy11896 280 ----FTVEVERALRVLDGAILVLCAVGGV------QSQT-LTVNRQMK----------RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 ----f~~e~~~~l~~~D~~ilVvda~~g~------~~~t-~~~~~~~~----------~~~~p~ivviNKiD~~~ 333 (1043)
+.......++.+|++++|+|+.... .... ........ ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 60 EGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred cCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 2224456678899999999998762 1111 11212221 14789999999999863
No 379
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.40 E-value=1.2e-12 Score=145.00 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=97.0
Q ss_pred HhhhcCEEEEEEeCCCCC-chhH-HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 70 ALRVLDGAILVLCAVGGV-QSQT-LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~-~~~~-~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.+.++|.+++|+|+.++. +... ...+..+...++|+++|+||+|+.... + ... ...... .. .
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~-~-~~~-~~~~~~------------~~-g 138 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE-E-EEL-ELVEAL------------AL-G 138 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH-H-HHH-HHHHHH------------hC-C
Confidence 378899999999998765 3332 223334556789999999999996431 1 111 111110 01 1
Q ss_pred eeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCce
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRIS 227 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~ 227 (1043)
.+++++||+++.|+++|...+.. +.++++|++|+|||||+|+|+......
T Consensus 139 ~~v~~vSA~~g~gi~~L~~~L~~-----------------------------k~~~~~G~sg~GKSTlin~l~~~~~~~- 188 (287)
T cd01854 139 YPVLAVSAKTGEGLDELREYLKG-----------------------------KTSVLVGQSGVGKSTLINALLPDLDLA- 188 (287)
T ss_pred CeEEEEECCCCccHHHHHhhhcc-----------------------------ceEEEECCCCCCHHHHHHHHhchhhcc-
Confidence 36789999999999998876631 358999999999999999998543211
Q ss_pred eeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch
Q psy11896 228 EMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 281 (1043)
Q Consensus 228 ~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~ 281 (1043)
.+.+.. .....+++|.......+... ..++||||..+|.
T Consensus 189 -~g~v~~-----------~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 189 -TGEISE-----------KLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred -ccceec-----------cCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 111110 11234456666655544333 3699999987763
No 380
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.40 E-value=2.8e-12 Score=128.57 Aligned_cols=113 Identities=24% Similarity=0.206 Sum_probs=77.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+....... .....+.+..............+++||+||+..|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-------------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF 62 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-------------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHH
Confidence 699999999999999999973321110 0011122222222222234578899999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++++|+|+.+.-.......| ..... .+.|+++++||+|..
T Consensus 63 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 63 RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99899999999999999999874332332223 23333 358999999999975
No 381
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.1e-12 Score=143.03 Aligned_cols=190 Identities=22% Similarity=0.274 Sum_probs=141.8
Q ss_pred eecccccccC---CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC
Q psy11896 10 IKQEQVRGKD---NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG 86 (1043)
Q Consensus 10 ~~~~~gk~s~---~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~ 86 (1043)
|--..|||+. .....+|..++|+++|+|+|..+.++...++.+.|+|.|||.+|.+.+..++...|.++||||+.+|
T Consensus 7 GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG 86 (447)
T COG3276 7 GHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG 86 (447)
T ss_pred eeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC
Confidence 4445677754 4555679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCCE-EEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHH
Q psy11896 87 VQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLT 165 (1043)
Q Consensus 87 ~~~~~~~~~~~l~~~~~pi-ilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~ 165 (1043)
+..|+.+++..+...+++- ++|+||+|+.+. .+..+.+++.+.. ..+...+++++|+.+|.||++|.
T Consensus 87 l~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i~~Il~~----------l~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 87 LMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKIKQILAD----------LSLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred cchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHHHHHHhh----------cccccccccccccccCCCHHHHH
Confidence 9999999999999999984 999999998752 2332333332211 11334567999999999999999
Q ss_pred HHHHhhccccccccccccccccccccCCCCccceeeE-----EEEEeecCCcccHHhHHh
Q psy11896 166 ERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNI-----GISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i-----~ivG~~~~GKTTL~~~Ll 220 (1043)
+.+.+.... .....+.+.++..++.-+| ++.|.+-+|+...-+.|.
T Consensus 155 ~~l~~L~~~---------~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~ 205 (447)
T COG3276 155 NELIDLLEE---------IERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLY 205 (447)
T ss_pred HHHHHhhhh---------hhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEE
Confidence 999877641 0001112233333333332 466777777766655554
No 382
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.40 E-value=1.4e-12 Score=129.22 Aligned_cols=96 Identities=23% Similarity=0.175 Sum_probs=66.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC--
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV-- 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~-- 278 (1043)
+|+++|++|+|||||+++|+..... . ..|+ ...|.+ .+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------------------------~-~~t~-----~~~~~~---~~iDt~G~~~~ 48 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------------------------Y-KKTQ-----AVEYND---GAIDTPGEYVE 48 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------------------------c-ccce-----eEEEcC---eeecCchhhhh
Confidence 7999999999999999999632100 0 0111 233333 689999973
Q ss_pred --CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 --DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 --df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+...+..+++.+|++++|+|+.++...+....... .+.|+++|+||+|+.
T Consensus 49 ~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 49 NRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred hHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 233334456789999999999998776665433332 245999999999975
No 383
>PLN03110 Rab GTPase; Provisional
Probab=99.40 E-value=1.2e-12 Score=139.32 Aligned_cols=156 Identities=15% Similarity=0.054 Sum_probs=113.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||++.........+..+..+.+..+.....+.+++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 12 ~~Ki~iv-G~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 12 LFKIVLI-GDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 3688888 9999999999888877777766667666666555666655 479999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+.+....| ..+.. .++|+++|+||+|+.... ..+....+... . ..+++.+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-------------~---~~~~~e~ 154 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-------------E---GLSFLET 154 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHH-------------c---CCEEEEE
Confidence 9999865443333222 22222 468999999999985321 11122222211 1 1367889
Q ss_pred eecccCCcchHHHHHHhhccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
||++|.|++++++.+...+..
T Consensus 155 SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 155 SALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876653
No 384
>KOG1144|consensus
Probab=99.40 E-value=7e-12 Score=143.86 Aligned_cols=307 Identities=20% Similarity=0.187 Sum_probs=171.1
Q ss_pred eeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec------------C---e---eEEEEeCCCCcchHHHH
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------D---H---NINIIDTPGHVDFTVEV 67 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~------------~---~---~i~liDTPG~~~~~~~~ 67 (1043)
.+|.|--.+|||...-..-..+-.....-|+|..+...+|... . . -+.+||||||+.|....
T Consensus 478 cCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlR 557 (1064)
T KOG1144|consen 478 CCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLR 557 (1064)
T ss_pred EEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhh
Confidence 4555667777777643333334344445566666655444422 1 1 28999999999999999
Q ss_pred HHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC-C------CHH--------HHHHHHHHhhhh
Q psy11896 68 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-A------DPY--------RVINQMRQKTSR 132 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~-~------~~~--------~~~~~l~~~~~~ 132 (1043)
.++...||.+|+|+|+-.|+.+|+.+.+..++..+.|+|+++||+|++- + ... .+.+++..++..
T Consensus 558 srgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ 637 (1064)
T KOG1144|consen 558 SRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNN 637 (1064)
T ss_pred hccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999742 1 111 112222222222
Q ss_pred c---cccccccCC------CCccceeeeeeeecccCCcchHHHHHHhhccc-ccccccccccc-----cccc-------c
Q psy11896 133 W---ISNESLSEH------KPIEYIRNIGISAHIDSGKTTLTERILFYTGR-ISEMHETSRWI-----SNES-------L 190 (1043)
Q Consensus 133 ~---~~~~~l~~~------~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~~~~~~~~~~~-----~~~~-------~ 190 (1043)
. +..++++.. ..-.+..++|+||.+|+|+.+|+-.|.+..-. +.+.+.-.... ..+. .
T Consensus 638 ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTI 717 (1064)
T KOG1144|consen 638 IIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTI 717 (1064)
T ss_pred HHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceE
Confidence 1 112233221 12235678999999999999998887765433 22222111100 0000 0
Q ss_pred cCCCC---ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 191 SEHKP---IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 191 ~~~~~---~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
..... ...--+|+++|..|-=-||+- +||- +.. +-...=. .+|..+-+.....|+-|-..-..--..|.
T Consensus 718 DViLvNG~L~eGD~IvvcG~~GpIvTtIR-aLLt--P~P--lkElRVk---~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~ 789 (1064)
T KOG1144|consen 718 DVILVNGELHEGDQIVVCGLQGPIVTTIR-ALLT--PQP--LKELRVK---GTYVHHKEVKAAQGIKIAAKDLEKAIAGT 789 (1064)
T ss_pred EEEEEcceeccCCEEEEcCCCCchhHHHH-HhcC--Ccc--hHhhccc---cceeehhHhhhhccchhhhcchHHHhcCC
Confidence 00000 000124677777665555544 4431 110 0011111 23555556666667665443332223456
Q ss_pred eEEEEcCCCCCCchH-----HHHHHh---HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE
Q psy11896 268 NINIIDTPGHVDFTV-----EVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 323 (1043)
Q Consensus 268 ~i~liDtPG~~df~~-----e~~~~l---~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i 323 (1043)
.+.+++---.++... ++...| ..+--.++|..++-| ..+.++..+....+|+.
T Consensus 790 ~l~VvgpeDd~e~lk~~~m~dl~~~l~~Id~sgeGv~vqastlg---slealleflk~~kIPv~ 850 (1064)
T KOG1144|consen 790 RLLVVGPEDDIEELKEEAMEDLESVLSRIDKSGEGVYVQASTLG---SLEALLEFLKTVKIPVS 850 (1064)
T ss_pred eeEEeCCcccHHHHHHHHHHHHHHHHHHhhccCCceEEEecccc---hHHHHHHHHhhcCcccc
Confidence 666665433333221 233333 333334555555544 23455566666677764
No 385
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.40 E-value=2.9e-12 Score=132.64 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=75.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+.++... .. ..+ .+..|.. ...+.+.+..+.+|||||+.+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~--~~---------------~~~---~~T~~~~----~~~~~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLG--EV---------------VTT---IPTIGFN----VETVEYKNLKFTMWDVGGQDK 73 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Cc---------------ccc---CCccccc----eEEEEECCEEEEEEECCCCHh
Confidence 57999999999999999999521 11 000 1111222 223456788999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcc-hHHHHHHHHH-Hh---cCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQM-KR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~-~~t~~~~~~~-~~---~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++|+|+|+.+.-. ......+... .. .+.|+++|.||.|+..
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 98888888999999999999975211 1112222222 11 3579999999999864
No 386
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.40 E-value=9.6e-13 Score=134.11 Aligned_cols=155 Identities=12% Similarity=0.024 Sum_probs=103.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceE--EEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAAT--YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~--~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
|+.++ |+.++||+|...+...+.++.+ .+.++-+ ... .+...+.++.+|||||+..+...+..+++.+|++++|+
T Consensus 2 kv~iv-G~~~vGKTsl~~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 2 RIVLI-GDEGVGKSSLIMSLVSEEFPEN-VPRVLPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred EEEEE-CCCCCCHHHHHHHHHhCcCCcc-CCCcccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 67788 9999999999888777777644 3433221 122 22224568999999999988888888899999999999
Q ss_pred eCCCCCchhHH-HHH-HHHH--hcCCCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVN-RQMK--RYDVPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~-~~l~--~~~~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|++++.+.... ..| ..+. ..++|+++|+||+|+.+.... ...+.+...... + . ...+++.+||+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~------~---~--~~~~~~e~Sa~ 147 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE------F---R--EIETCVECSAK 147 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHH------H---h--cccEEEEeccc
Confidence 99865544432 122 2233 236899999999999653321 111111111000 0 0 01256889999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.+....
T Consensus 148 ~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 148 TLINVSEVFYYAQKAV 163 (166)
T ss_pred cccCHHHHHHHHHHHh
Confidence 9999999999887654
No 387
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.40 E-value=9.9e-13 Score=133.30 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=105.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||+++..+...+.+..+..+..........+.++ +..+.+|||||+.++...+..+++.+|++++
T Consensus 1 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLL-GDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 3788899 999999999988887777765444433322223333444 4579999999999998888889999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+... ...+..+.. .+.|+++++||+|+.... .......+... .. .+++++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-------------~~---~~~~~~ 143 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADE-------------NG---LLFFET 143 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHH-------------cC---CEEEEE
Confidence 999985432222 222233332 357899999999986321 11111111111 11 357999
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+.+.+
T Consensus 144 Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 144 SAKTGENVNELFTEIAKKL 162 (163)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 9999999999999988654
No 388
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.40 E-value=9.1e-13 Score=139.68 Aligned_cols=155 Identities=10% Similarity=0.007 Sum_probs=110.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec-C--eeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-D--HNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~--~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.||+.++ |+.++||++.........+.....|.++.+.....+.+. + .++.+|||||+..+...+..+++.+|++|
T Consensus 2 ~~KIvvv-G~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 2 QFRLIVI-GDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 5899999 999999999988888777776666766666555555543 3 47999999999999988899999999999
Q ss_pred EEEeCCCCCchhHHHH-HHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~-~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|.++..+...... +..+. ....|+++|+||+|+..... ......+.+. .. .+++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~-------------~~---~~~~ 144 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD-------------LG---MKYI 144 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH-------------hC---CEEE
Confidence 9999986433222221 12221 12467899999999864211 1111222221 11 3567
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+||++|.|++++++.+...+.
T Consensus 145 e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 145 ETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999987554
No 389
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.40 E-value=1.6e-12 Score=146.00 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=109.3
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC-eeEEEEeCCCCcc-------hHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHVD-------FTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~~i~liDTPG~~~-------~~~~~~~~~~~aD 75 (1043)
++.++ |.+.+||+|...+...........|.+|+.++...+.+.+ .+++||||||+.+ +...+.+.++.+|
T Consensus 159 dV~lv-G~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 159 DVGLV-GLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred cEEEE-cCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 45667 9999999999777666555566678999999999999877 8999999999863 5556777788899
Q ss_pred EEEEEEeCCCC---CchhHH-HHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 76 GAILVLCAVGG---VQSQTL-TVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 76 ~iIlVvDa~~~---~~~~~~-~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
++++|+|+++. ....+. .+...+.. .++|+++|+||+|+.... . .+.+.+.+... . .
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~--~-~~~~~~~l~~~---------~--~ 303 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE--E-LAELLKELKKA---------L--G 303 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH--H-HHHHHHHHHHH---------c--C
Confidence 99999999853 111222 22223322 368999999999996532 1 12222222100 1 1
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+++++||++++|+++|++.+...+
T Consensus 304 -~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 304 -KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred -CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 3578999999999999999987643
No 390
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.40 E-value=8.7e-13 Score=154.82 Aligned_cols=146 Identities=21% Similarity=0.111 Sum_probs=113.2
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH--------HHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV--------EVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~--------~~~~~~~~ 73 (1043)
+|+.++ |...+||+|.....+.... .....+|+|++.....+.+++..+.+|||||+.++.. .+..+++.
T Consensus 216 ~kV~iv-G~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 216 LKVVIA-GRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEE 294 (449)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 677788 9999999999777666543 4567899999999999999999999999999975432 24557899
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++++........+.. ..++|+++|+||+|+....... . ....+++++
T Consensus 295 aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~------~----------------~~~~~~i~i 350 (449)
T PRK05291 295 ADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE------E----------------ENGKPVIRI 350 (449)
T ss_pred CCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh------h----------------ccCCceEEE
Confidence 999999999988766655555444 4578999999999996432110 0 111356889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|+++|++.+...+.
T Consensus 351 SAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAF 370 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHh
Confidence 99999999999999987654
No 391
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.40 E-value=1.4e-12 Score=133.57 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=109.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHH-HHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTV-EVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~-~~~~~~~~aD~iI 78 (1043)
.+|+.++ |.+++||++...+...+.++.+..+.++.+.....+.+++ +.+.+|||||+.++.. .+..+++.+|+++
T Consensus 2 ~~ki~vv-G~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 2 IFKIIVI-GDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 4788888 9999999999988888888877777776666656666665 5799999999998874 5777889999999
Q ss_pred EEEeCCCCCchhHHHHHH-HHHh----cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTLTVNR-QMKR----YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~~~-~l~~----~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++..+.+....|. .+.. .++|+++|+||+|+.+... ......+.+. .. .+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~ 144 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA-------------HS---MPLF 144 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH-------------cC---CcEE
Confidence 999998755544443333 2222 3589999999999864221 1111222211 11 3457
Q ss_pred eeeecc---cCCcchHHHHHHh
Q psy11896 152 GISAHI---DSGKTTLTERILF 170 (1043)
Q Consensus 152 ~iSa~~---g~Gi~~L~~~l~~ 170 (1043)
.+||++ +.|+++++..++.
T Consensus 145 e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 145 ETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred EEeccCCcCCCCHHHHHHHHHH
Confidence 899999 7788888777764
No 392
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.39 E-value=4.6e-12 Score=133.23 Aligned_cols=114 Identities=20% Similarity=0.154 Sum_probs=77.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|..|+|||||+++++... ... . .....|+... ...+.+.+ ..+.|||||
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~~------~-----------~~~t~~~~~~--~~~~~~~~~~~~l~l~D~~ 63 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FSG------S-----------YITTIGVDFK--IRTVEINGERVKLQIWDTA 63 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC------C-----------cCccccceeE--EEEEEECCEEEEEEEEeCC
Confidence 35789999999999999999997321 000 0 0011122222 22233333 578899999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH--hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK--RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~--~~~~p~ivviNKiD~~ 332 (1043)
|+..|.......++.+|++++|+|+.+.-.-+....| .... ....|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 64 GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred CchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999988888899999999999999875433333223 2222 2357999999999975
No 393
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=2e-12 Score=148.16 Aligned_cols=164 Identities=10% Similarity=0.073 Sum_probs=114.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-eEEEEeCCCCcc-------hHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHVD-------FTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~-------~~~~~~~~~~~aD 75 (1043)
++-|| |-+.+||+|.+.+.+.........|+||+.++.+.+.+.+. ++.|+||||+.+ +...+...++.+|
T Consensus 161 dValV-G~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLL-GLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEE-cCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 45566 99999999987666555555667899999999999998764 699999999864 4456677899999
Q ss_pred EEEEEEeCCC----CCchhHHHHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 76 GAILVLCAVG----GVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 76 ~iIlVvDa~~----~~~~~~~~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
++++|+|++. .+......+...+.. .++|+++|+||+|+... ....+.+.+... ...
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~~------------~~~ 305 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIVE------------ALG 305 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHHH------------HhC
Confidence 9999999872 122222333444443 36899999999998642 222222221110 011
Q ss_pred c-eeeeeeeecccCCcchHHHHHHhhccccccccccc
Q psy11896 147 Y-IRNIGISAHIDSGKTTLTERILFYTGRISEMHETS 182 (1043)
Q Consensus 147 ~-~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~ 182 (1043)
+ .+++++||+++.|+++|++.+..++++-+.+++..
T Consensus 306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~ 342 (390)
T PRK12298 306 WEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEE 342 (390)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcc
Confidence 1 25789999999999999999998887644443333
No 394
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.39 E-value=1.4e-12 Score=134.70 Aligned_cols=152 Identities=9% Similarity=-0.033 Sum_probs=107.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||++...++..+.++.+..|.+.... ...+..++ ..+.||||+|+.+|......+++++|++|+
T Consensus 5 ~~Kivvv-Gd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 5 KCKIVVV-GDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 4788888 9999999999999988888877777554332 23344444 469999999999999888899999999999
Q ss_pred EEeCCCCCchhHH-HHH-HHHHh--cCCCEEEEEecCCCCCCCH--------------HHHHHHHHHhhhhccccccccC
Q psy11896 80 VLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLGADP--------------YRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~-~~l~~--~~~piilvlNKiDl~~~~~--------------~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
|+|.++..+.... ..| ..+.. .+.|+++|+||+|+.+... .+..+++.+.
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~------------ 150 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ------------ 150 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH------------
Confidence 9999875444442 222 22322 3679999999999853110 0001111111
Q ss_pred CCCccceeeeeeeecccCC-cchHHHHHHh
Q psy11896 142 HKPIEYIRNIGISAHIDSG-KTTLTERILF 170 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~G-i~~L~~~l~~ 170 (1043)
....+.+.+||++|.| ++++++.+..
T Consensus 151 ---~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 151 ---IGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred ---cCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 1112457799999998 9999988765
No 395
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.39 E-value=1.4e-12 Score=134.76 Aligned_cols=146 Identities=12% Similarity=0.126 Sum_probs=102.8
Q ss_pred CccceeeeeecccccccCCccccCCCh--hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc----------hHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM--ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD----------FTVEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~--~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~----------~~~~~~~ 69 (1043)
.+++.|+ |..++||+|+..+...+.+ .....+|+|.+...... + ..+.+|||||+.. +......
T Consensus 18 ~~~i~iv-G~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 18 GPEIAFA-GRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 3577777 9999999999777666542 23457788887664433 3 3799999999742 3333334
Q ss_pred Hhh---hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 70 ALR---VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 70 ~~~---~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+++ .+|++++|+|++.+....+..++..+...++|+++++||+|+.... .+...+++++.+... .
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~-----------~ 162 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD-----------A 162 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-----------c
Confidence 444 4689999999998888888888888888899999999999986432 233344454444310 1
Q ss_pred cceeeeeeeecccCCcc
Q psy11896 146 EYIRNIGISAHIDSGKT 162 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~ 162 (1043)
...+++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 12368999999999974
No 396
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.39 E-value=3.7e-12 Score=133.51 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=71.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|.+|+|||||+++++... .. .+....++.......+.+++ +.+++|||||+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~-------------------~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FP-------------------EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CC-------------------cccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 69999999999999999997321 10 00011111111112234455 578899999987
Q ss_pred CchH----H----HHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH------hcCCCeEEEEeccCCC
Q psy11896 279 DFTV----E----VERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK------RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~----e----~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~------~~~~p~ivviNKiD~~ 332 (1043)
+|.. + ...+++.+|++|+|+|+.+..+-+....| .... ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 61 RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred cCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 6531 1 33557899999999999875444333333 2222 2468999999999985
No 397
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=2.2e-12 Score=144.95 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=110.7
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe-cCeeEEEEeCCCCcc-------hHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVD-------FTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~-------~~~~~~~~~~~aD 75 (1043)
++-++ |.+.+||+|.+.+...........|+||++++.+.+.+ ++.+|++|||||+.+ +...+.+.++.+|
T Consensus 160 dVglV-G~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 160 DVGLV-GLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CEEEE-cCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 45667 99999999997776655545566789999999999988 456899999999853 5567778888999
Q ss_pred EEEEEEeCCCCCchhHHH-HHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 76 GAILVLCAVGGVQSQTLT-VNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~-~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
++|+|+|+++.-..+... +...+.. .++|+++|+||+|+...... ..+.++.... . . ..+
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~-~~~~~~~~~~----~--------~-~~~ 304 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE-REKRAALELA----A--------L-GGP 304 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH-HHHHHHHHHH----h--------c-CCC
Confidence 999999998543333332 2233332 36899999999999753211 1111111110 0 0 136
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++++||++++|+++|++.+...+.
T Consensus 305 i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 305 VFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999987654
No 398
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.39 E-value=1.3e-12 Score=132.39 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=105.4
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |.+++||+|...++..+.+.....+.+ .+........++ ..+.+|||||+.++...+..+++.+|++++|
T Consensus 1 ~ki~~~-G~~~~GKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVV-GAGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCccccCCcc-hhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 688888 999999999988888777765544443 333333334443 5799999999999999999999999999999
Q ss_pred EeCCCCCchhH-HHHHHH-HH---hcCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQT-LTVNRQ-MK---RYDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~-~~~~~~-l~---~~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|..+.-+... ...+.. .. ..++|+++|+||+|+... ........+.+.+ . .+++++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~ 142 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW-------------G---VPYVET 142 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHh-------------C---CeEEEe
Confidence 99875322111 112222 22 257999999999998652 1111111222111 1 357899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 143 Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 143 SAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 399
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.39 E-value=1.3e-12 Score=134.51 Aligned_cols=163 Identities=6% Similarity=-0.043 Sum_probs=106.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++|||+....+..+.++.+..|.+..+.. ..+..++ .++.+|||||+..+......+++.+|++|+
T Consensus 1 ~~Kiv~v-G~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 1 RCKIVVV-GDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence 4788888 99999999999999888888777765543322 3344444 468999999999998888889999999999
Q ss_pred EEeCCCCCchhHH-HHH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcc---ccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWI---SNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++..+.... ..| ..+.. .+.|+++|+||+|+.+. .... ..+...-...+ ....+... ....+.+.
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~-~~~~-~~~~~~~~~~v~~~e~~~~a~~--~~~~~~~E 154 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTD-LSTL-MELSHQRQAPVSYEQGCAIAKQ--LGAEIYLE 154 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcC-hhHH-HHHHhcCCCCCCHHHHHHHHHH--hCCCEEEE
Confidence 9999875554442 222 22322 36799999999998531 1000 00000000000 00000101 11124577
Q ss_pred eeecccCC-cchHHHHHHh
Q psy11896 153 ISAHIDSG-KTTLTERILF 170 (1043)
Q Consensus 153 iSa~~g~G-i~~L~~~l~~ 170 (1043)
+||++|+| +++++..+..
T Consensus 155 ~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 155 CSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CccCcCCcCHHHHHHHHHH
Confidence 99999995 9999998875
No 400
>PRK11058 GTPase HflX; Provisional
Probab=99.39 E-value=2.9e-12 Score=148.62 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=79.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe-eEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDtPG 276 (1043)
.+..|+++|.+|+|||||+|+|+..... .....++|++.....+.+.+. .+.++||||
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~---------------------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG 254 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY---------------------AADQLFATLDPTLRRIDVADVGETVLADTVG 254 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee---------------------eccCCCCCcCCceEEEEeCCCCeEEEEecCc
Confidence 3467999999999999999999743211 112345666666656666554 889999999
Q ss_pred CCCc-hH-------HHHHHhHhcCeEEEEEeCCCCcchHHH----HHHHHHHhcCCCeEEEEeccCCC
Q psy11896 277 HVDF-TV-------EVERALRVLDGAILVLCAVGGVQSQTL----TVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df-~~-------e~~~~l~~~D~~ilVvda~~g~~~~t~----~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.+. .. .+...++.+|++++|+|+.+....... ..+..+...++|+++|+||+|+.
T Consensus 255 ~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 255 FIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred ccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 8542 11 133445889999999999986543332 23333334578999999999985
No 401
>KOG0098|consensus
Probab=99.38 E-value=1e-12 Score=128.10 Aligned_cols=154 Identities=14% Similarity=0.032 Sum_probs=112.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||.+|+ ||.++||+..+++++...|..-....+.++.....++.+++ ++++|||+|++.|.+.+..+++.+.++||
T Consensus 6 ~fKyIii-Gd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 6 LFKYIII-GDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred eEEEEEE-CCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 6899999 99999999999888888887666666666666677777665 69999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHH-HHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVNR-QMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~-~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|.|.+..-+......|. -++. .+.-++++.||+||.... ..+.-++..+. ..+.+ ..+
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e-------------hgLif---mET 148 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFARE-------------HGLIF---MET 148 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHH-------------cCcee---ehh
Confidence 99998654444443332 2333 356689999999996432 11111222221 12223 359
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++++|+++.+...+...
T Consensus 149 Sakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEI 167 (216)
T ss_pred hhhhhhhHHHHHHHHHHHH
Confidence 9999999999987766443
No 402
>PLN03118 Rab family protein; Provisional
Probab=99.38 E-value=3.8e-12 Score=135.12 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=77.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
..+|+++|+.|+|||||+++|+... ... .....|.+.. ...+.++ ...+.||||||
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~------------------~~~t~~~~~~--~~~~~~~~~~~~l~l~Dt~G 71 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED------------------LAPTIGVDFK--IKQLTVGGKRLKLTIWDTAG 71 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC------------------cCCCceeEEE--EEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997321 100 0111222222 2223333 36789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH-H----hcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM-K----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~-~----~~~~p~ivviNKiD~~ 332 (1043)
+.+|......+++.+|++|+|+|+.+....+... .|... . ..+.|+++|.||+|+.
T Consensus 72 ~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 72 QERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred chhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999988889999999999999998754443332 24222 1 2357899999999985
No 403
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.38 E-value=4.9e-12 Score=129.13 Aligned_cols=110 Identities=22% Similarity=0.161 Sum_probs=74.3
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|.+|+|||||++++....- .. .+. ...+ ......+.++ ...+.+|||||+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~~--------------~~~---~t~~---~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--IE--------------SYD---PTIE---DSYRKQVEIDGRQCDLEILDTAGTE 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc--------------ccC---Ccch---heEEEEEEECCEEEEEEEEeCCCcc
Confidence 699999999999999999962211 00 000 0001 1111222333 3578899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|..+...-+...-| +.....++|++++.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 61 QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 9999889999999999999999864333322222 22223578999999999975
No 404
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.38 E-value=2.3e-12 Score=117.53 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=67.9
Q ss_pred cEEEEEeeeecCC--ccEEEEEEecCeecCCCEEEecCCC---------cEEEeceEEEeccCCeeecCeecCCCEEEEc
Q psy11896 502 FIALAFKLEAGKF--GQLTYMRCYQGKLRKGEMIYNVRTD---------KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 570 (1043)
Q Consensus 502 ~~~~V~K~~~d~~--G~i~~~RV~sGtl~~gd~v~~~~~~---------~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~ 570 (1043)
++++|||+.++++ |+++|+|||||+|++||.|++.+.+ ..++|.+|+.++|.+..++++|.||||+++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 4789999999997 5699999999999999999875321 4589999999999999999999999999999
Q ss_pred cC-ccccCcEE
Q psy11896 571 GV-DCASGDTF 580 (1043)
Q Consensus 571 gl-~~~~Gdtl 580 (1043)
|+ +..++.+.
T Consensus 81 gl~~~~~~~~t 91 (94)
T cd04090 81 GIDSSIVKTAT 91 (94)
T ss_pred CcchheeceEE
Confidence 99 55555443
No 405
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.38 E-value=2.3e-12 Score=130.81 Aligned_cols=151 Identities=11% Similarity=-0.016 Sum_probs=103.2
Q ss_pred cceeeeeecccccccCCccccCC--ChhhhhhcCCccccceEEEEe---cCeeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMD--SMELERQRGITIQSAATYTLW---KDHNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d--~~~~e~~~G~T~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
|+.++ |+.++||++.......+ .++.+..+.+..+.....+.. ...++.+|||||+..+...+..+++.+|+++
T Consensus 2 ki~vv-G~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 2 RCAVV-GDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred EEEEE-CCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 77888 99999999998766544 566666665544443333333 2358999999999998888899999999999
Q ss_pred EEEeCCCCCchhHHH-HHHHHHh--cCCCEEEEEecCCCCCCC-HHH-HHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 79 LVLCAVGGVQSQTLT-VNRQMKR--YDVPCIAFINKLDRLGAD-PYR-VINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~-~~~~l~~--~~~piilvlNKiDl~~~~-~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+|.++..+..... ....+.. .++|+++|+||+|+.+.. ... ....+... . ..+++.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~~~~ 144 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQA-------------N---QLKFFKT 144 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHH-------------c---CCeEEEE
Confidence 999998643322222 2222322 358999999999986432 111 11111111 1 1256889
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+...
T Consensus 145 Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 145 SALRGVGYEEPFESLARA 162 (164)
T ss_pred eCCCCCChHHHHHHHHHH
Confidence 999999999999988754
No 406
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.38 E-value=9.4e-12 Score=127.21 Aligned_cols=114 Identities=17% Similarity=0.108 Sum_probs=76.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtP 275 (1043)
...+|+++|.+|+|||||+++++... .. .+....++.......+.++ ...+.|||||
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~ 62 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK--FD-------------------TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC--CC-------------------cCcCCceeeEEEEEEEEECCeEEEEEEEeCC
Confidence 35789999999999999999997321 10 0001111122112223333 3567899999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-----HH---hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-----MK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-----~~---~~~~p~ivviNKiD~~ 332 (1043)
|+.+|.......++.+|++++|+|..+....+....|.. +. ..++|+++|.||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 63 GQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred ChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 999998888888999999999999986543333333321 11 2457999999999975
No 407
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=3.1e-12 Score=128.84 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=109.8
Q ss_pred eeecccccccCCccccCC-C--hhhhhhcCCccccceEEEEecCeeEEEEeCCCCc-------------chHHHHHHHhh
Q psy11896 9 HIKQEQVRGKDNVGAVMD-S--MELERQRGITIQSAATYTLWKDHNINIIDTPGHV-------------DFTVEVERALR 72 (1043)
Q Consensus 9 ~~~~~~gk~s~~~~~~~d-~--~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~-------------~~~~~~~~~~~ 72 (1043)
..+.+++++|+.+++.+. . -...++||.|+..++..+.. .+.|+|.||+. ++..+.+..-.
T Consensus 29 F~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~ 105 (200)
T COG0218 29 FAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRA 105 (200)
T ss_pred EEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhch
Confidence 344444444555555554 4 56889999999999876642 39999999996 12233333334
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+..++++++|++.++...+.++++++...++|+++++||+|.++. +..+.+..+.+.+. +...+. ..++
T Consensus 106 ~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~-------~~~~~~---~~~~ 175 (200)
T COG0218 106 NLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELK-------KPPPDD---QWVV 175 (200)
T ss_pred hheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhc-------CCCCcc---ceEE
Confidence 567899999999999999999999999999999999999998763 34445566655442 111111 1278
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..|+.++.|+++|...|...+.
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEecccccCHHHHHHHHHHHhh
Confidence 8999999999999999887654
No 408
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.38 E-value=6.2e-12 Score=128.30 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=79.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+++|... .... .....|. ....+.+++..++++||||+..|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~~------------------~~~t~g~----~~~~~~~~~~~~~i~D~~G~~~~ 56 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPKK------------------VAPTVGF----TPTKLRLDKYEVCIFDLGGGANF 56 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCcc------------------ccCcccc----eEEEEEECCEEEEEEECCCcHHH
Confidence 4899999999999999999632 1000 0111122 23346678899999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHHHh----cCCCeEEEEeccCCCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR----YDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~~~----~~~p~ivviNKiD~~~~~ 335 (1043)
......+++.+|++|+|+|+.+.-..+ ....+..... .++|+++|+||+|+....
T Consensus 57 ~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 57 RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred HHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 988899999999999999998743222 2222332222 478999999999987543
No 409
>KOG0087|consensus
Probab=99.37 E-value=7.9e-13 Score=132.11 Aligned_cols=154 Identities=16% Similarity=0.085 Sum_probs=116.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||++++ ||+++||+...-.+..|.+..+.++.+.+++.+..+..++. +..||||+|+++|...+..+++.|-++++
T Consensus 14 lFKiVli-GDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 14 LFKIVLI-GDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred EEEEEEe-CCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 5899999 99999999999999999999999998887777777776665 78999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCC--CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGA--DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|.|.+...+.+...-| +.++. .++++++|.||+||.+. -+.+.-..+.+. ..+ ..+.+
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~-------------~~l---~f~Et 156 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-------------EGL---FFLET 156 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHh-------------cCc---eEEEe
Confidence 9999876555543322 23333 36889999999999541 111111112221 122 23669
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||..+.|++..++.+....
T Consensus 157 SAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 157 SALDATNVEKAFERVLTEI 175 (222)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 9999999999987765443
No 410
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.37 E-value=3.2e-12 Score=130.42 Aligned_cols=152 Identities=14% Similarity=0.052 Sum_probs=101.0
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~ 84 (1043)
+.++ |..++||++...... +.++.+..| |+......+..++..+.+|||||+.++...+..+++.+|++|+|+|++
T Consensus 2 i~~~-G~~~~GKTsl~~~l~-~~~~~~~~~--t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 2 LLTV-GLDNAGKTTLVSALQ-GEIPKKVAP--TVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred EEEE-CCCCCCHHHHHHHHh-CCCCccccC--cccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4555 999999999965544 444444333 444445567778899999999999999999999999999999999998
Q ss_pred CCCchhH-HHHHHHHHh----cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 85 GGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 85 ~~~~~~~-~~~~~~l~~----~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
+...... ...+..+.. .++|+++|+||+|+.+.. ..+..+.+. +. .+.... .....++++||++|
T Consensus 78 ~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~--l~------~~~~~~-~~~~~~~~~Sa~~g 148 (167)
T cd04161 78 DDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLS--LE------KLVNEN-KSLCHIEPCSAIEG 148 (167)
T ss_pred chhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcC--cc------cccCCC-CceEEEEEeEceeC
Confidence 6432222 222222221 478999999999997643 222222210 00 111111 11246788999998
Q ss_pred ------CCcchHHHHHH
Q psy11896 159 ------SGKTTLTERIL 169 (1043)
Q Consensus 159 ------~Gi~~L~~~l~ 169 (1043)
.|+++.+++|.
T Consensus 149 ~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 149 LGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CCCccccCHHHHHHHHh
Confidence 78888777764
No 411
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.37 E-value=2.4e-12 Score=136.55 Aligned_cols=165 Identities=17% Similarity=0.061 Sum_probs=108.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
+|+.++ |+.++||+++..+...+.+.. ..| |+........+..+.+.||||||+..+...+..+++.+|++|+|+|
T Consensus 1 ~KIviv-G~~~vGKTSLi~r~~~~~f~~-~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLL-GDMNVGKTSLLHRYMERRFKD-TVS--TVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEE-CCCCCcHHHHHHHHhcCCCCC-CCC--ccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 578888 999999999999888888763 233 4444444445567789999999999999989999999999999999
Q ss_pred CCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCCC------------------HH---HHHHHHHHhhhhccccc
Q psy11896 83 AVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGAD------------------PY---RVINQMRQKTSRWISNE 137 (1043)
Q Consensus 83 a~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~~------------------~~---~~~~~l~~~~~~~~~~~ 137 (1043)
+++..+..... .+..+. ..++|+|+|+||+|+.... .. +....+.+.++.. .
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~---~ 153 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKY---K 153 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcc---c
Confidence 98754433332 222222 2357999999999986410 00 0111111111000 0
Q ss_pred cccCCC-CccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 138 SLSEHK-PIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 138 ~l~~~~-~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
-+.+.. .....+++.+||++|.|+++++..++...-+
T Consensus 154 ~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 154 MLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 000000 0111356789999999999999999876654
No 412
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.37 E-value=2.7e-12 Score=150.00 Aligned_cols=110 Identities=24% Similarity=0.322 Sum_probs=88.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+||++|++|+|||||.|+|+.....+ ...+|+|++-....+.++++.+.++|.||...
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~V---------------------gNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YS 62 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKV---------------------GNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYS 62 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCcee---------------------cCCCCeeEEEEEEEEEecCceEEEEeCCCcCC
Confidence 459999999999999999997543332 23679999999999999999999999999755
Q ss_pred ch---H-H--HHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FT---V-E--VERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~---~-e--~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+. . | +.+++ ...|.+|.|+||.. -.....+.-|+.+.++|+++++|++|..
T Consensus 63 L~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 63 LTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred CCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 32 2 2 34444 56799999999986 4455556667788999999999999964
No 413
>PLN03118 Rab family protein; Provisional
Probab=99.37 E-value=2.8e-12 Score=136.23 Aligned_cols=157 Identities=16% Similarity=0.069 Sum_probs=107.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++|||++..+...... .+..|.++.+.....+.+++ +++.||||||+.+|...+..+++.+|++|+
T Consensus 14 ~~kv~iv-G~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 14 SFKILLI-GDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred ceEEEEE-CcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4788888 9999999999877665554 34455554444444455544 578999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHH-HH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQ-MK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~-l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... .|.. +. ..+.|+++|+||+|+....... .+....... ... ..++.+
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~-~~~~~~~~~----------~~~---~~~~e~ 157 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS-REEGMALAK----------EHG---CLFLEC 157 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC-HHHHHHHHH----------HcC---CEEEEE
Confidence 99998644333322 2322 22 2357899999999986432110 011111100 011 246889
Q ss_pred eecccCCcchHHHHHHhhccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
||++|.|++++++.+...+..
T Consensus 158 SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 158 SAKTRENVEQCFEELALKIME 178 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999877754
No 414
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.37 E-value=3.2e-12 Score=148.66 Aligned_cols=155 Identities=12% Similarity=0.047 Sum_probs=110.7
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc-------hHHHHHHHhhhcCE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD-------FTVEVERALRVLDG 76 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~-------~~~~~~~~~~~aD~ 76 (1043)
++.|| |.+.+||+|++.+.+.........|++|++++.+.+.+++.+|+||||||+.+ +...+.+.++.+|+
T Consensus 161 dV~LV-G~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 161 DVGLV-GFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred eEEEE-EcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 56677 99999999997666655555567799999999999999999999999999853 33456777889999
Q ss_pred EEEEEeCCCC-----CchhHH----HHHHHH----------HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccc
Q psy11896 77 AILVLCAVGG-----VQSQTL----TVNRQM----------KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNE 137 (1043)
Q Consensus 77 iIlVvDa~~~-----~~~~~~----~~~~~l----------~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~ 137 (1043)
+|+|+|++.. +..... ++..+. ...++|+|+|+||+|+++.. ...+.+...+. .
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~~l~----~- 312 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRPELE----A- 312 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHHHHH----H-
Confidence 9999999741 111111 121121 12468999999999996422 22223322221 0
Q ss_pred cccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 138 SLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 138 ~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
. ..++++|||+++.|+++|+..+...+..
T Consensus 313 -------~-g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 313 -------R-GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred -------c-CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1 1368999999999999999999877653
No 415
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.37 E-value=7.6e-12 Score=130.52 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=73.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|.+|+|||||+++|+... ... ++ ..++...........+ ..+.+|||||+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~--------------~~------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVE--------------TY------DPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc--------------cC------CCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 48999999999999999997321 110 00 0000000011122333 458899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh------cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~------~~~p~ivviNKiD~~ 332 (1043)
+|......+++.+|++|+|+|..+.........| ..+.. .+.|+++|.||+|+.
T Consensus 59 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 59 EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 9998888899999999999999875433332222 22221 467999999999975
No 416
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.37 E-value=7.2e-12 Score=129.42 Aligned_cols=111 Identities=20% Similarity=0.225 Sum_probs=75.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
++|+++|++|+|||||+++++...... . +. .++.......+.+. ++.+.+|||||+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~--------~-----~~---------~t~~~~~~~~~~~~~~~~~~~l~D~~g~ 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE--------S-----YY---------PTIENTFSKIIRYKGQDYHLEIVDTAGQ 59 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc--------c-----cC---------cchhhhEEEEEEECCEEEEEEEEECCCh
Confidence 689999999999999999998322100 0 00 00000011122333 356899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHH----hcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~----~~~~p~ivviNKiD~~ 332 (1043)
.+|......++..+|++++|+|..+....+.... +.... ..++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 60 DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 9998888888999999999999997654443333 23222 2467999999999975
No 417
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.37 E-value=7.2e-13 Score=141.55 Aligned_cols=154 Identities=14% Similarity=0.219 Sum_probs=113.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcC-ceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRG-ITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~g-iTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+.|+++|++|+|||||++.|+...... . .....| +++ ...++.+++++||||+.
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~-------------~------~~~~~g~i~i------~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQ-------------N------ISDIKGPITV------VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccC-------------c------cccccccEEE------EecCCceEEEEeCCchH
Confidence 679999999999999999997432110 0 011223 221 22367889999999964
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEE-EEeccCCCCCC--HHHHHHHHHHHhCCCce---
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIA-FINKLDRLGAD--PYRVINQMRQKVGHNAA--- 352 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~iv-viNKiD~~~~~--~~~~~~~i~~~l~~~~~--- 352 (1043)
..+...+..+|.+++|+|+..|...++..++..+...++|.++ |+||+|+.... .++..+++++.+.....
T Consensus 95 ---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ 171 (225)
T cd01882 95 ---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGA 171 (225)
T ss_pred ---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCC
Confidence 6677788999999999999999999999999999888999655 99999997432 34555666554442211
Q ss_pred ---------eeeeccccCCCeeEEEEcccceeEeecCC
Q psy11896 353 ---------FLQIPIGLGSETKGIIDLIQRKAIYFEGP 381 (1043)
Q Consensus 353 ---------~~~~p~~~~~~~~g~~dl~~~~~~~~~~~ 381 (1043)
+.++|..++..+.+.+++++.+++.|...
T Consensus 172 ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~ 209 (225)
T cd01882 172 KLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNS 209 (225)
T ss_pred cEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecC
Confidence 34567777788889999999999999643
No 418
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.37 E-value=2.1e-12 Score=132.62 Aligned_cols=147 Identities=17% Similarity=0.108 Sum_probs=102.5
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEec-CeeEEEEeCCCCcc-------hHHHHHHHhhhcCEEEEEE
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVD-------FTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~-------~~~~~~~~~~~aD~iIlVv 81 (1043)
|.+++||+|...............+++|+++....+.++ +.++.+|||||+.+ +...+...++.+|++++|+
T Consensus 3 G~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~ 82 (176)
T cd01881 3 GLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVV 82 (176)
T ss_pred CCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEE
Confidence 889999999976666655555667899999998888888 89999999999843 3335567788999999999
Q ss_pred eCCCCC------chhHH-HHHHHHH----------hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 82 CAVGGV------QSQTL-TVNRQMK----------RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 82 Da~~~~------~~~~~-~~~~~l~----------~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
|+++.. ..... .....+. ..++|+++|+||+|+.......... .... ..
T Consensus 83 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~-------------~~ 148 (176)
T cd01881 83 DASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-VREL-------------AL 148 (176)
T ss_pred eccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-HHHH-------------hc
Confidence 998652 12111 1222221 1478999999999996532211110 0010 01
Q ss_pred ccceeeeeeeecccCCcchHHHHHHh
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
....+++++||+++.|++++++.+..
T Consensus 149 ~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 149 EEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred CCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 12245799999999999999998764
No 419
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.37 E-value=2.6e-12 Score=129.01 Aligned_cols=145 Identities=21% Similarity=0.164 Sum_probs=108.2
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH--------HHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV--------EVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~--------~~~~~~~~ 73 (1043)
+|+.++ |..++||++...+...... .....+++|.+.....+.+.+.++++|||||+.++.. .....+..
T Consensus 2 ~~i~l~-G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIV-GKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 466677 9999999998655544432 2345789999988888888888999999999876432 24457789
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++..........+.. ..++|+++|+||+|+...... . ......+++++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-----~----------------~~~~~~~~~~~ 137 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-----L----------------SLLAGKPIIAI 137 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-----c----------------cccCCCceEEE
Confidence 999999999997666655555444 467999999999998753321 0 11123467899
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||+++.|+++|++.+...
T Consensus 138 Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 138 SAKTGEGLDELKEALLEL 155 (157)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999988754
No 420
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.37 E-value=4.6e-12 Score=128.88 Aligned_cols=112 Identities=22% Similarity=0.260 Sum_probs=72.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC-
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD- 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d- 279 (1043)
+|+++|.+|+|||||+++++... .. + ++.+... +.......+.++...+.+|||||+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~-------~-------~~~~t~~----~~~~~~~~~~~~~~~~~i~D~~g~~~~ 60 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI-------G-------EYDPNLE----SLYSRQVTIDGEQVSLEILDTAGQQQA 60 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc-------c-------ccCCChH----HhceEEEEECCEEEEEEEEECCCCccc
Confidence 48999999999999999997311 10 0 0000000 11111222333345788999999985
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH-----hcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK-----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~-----~~~~p~ivviNKiD~~ 332 (1043)
+.......++.+|++|+|+|+.+....+....| .... ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 61 DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 456677888999999999999976443333322 2222 2378999999999974
No 421
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.37 E-value=3.2e-12 Score=129.17 Aligned_cols=152 Identities=15% Similarity=0.074 Sum_probs=105.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
||+.++ |..++||+|...+...+.......+.++.......+...+ ..+.+|||||+..+...+..+++.+|++++|
T Consensus 1 ~ki~i~-G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLL-GEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 688888 9999999999877776666555555554554444555444 3699999999999888888889999999999
Q ss_pred EeCCCCCchhHHHHH-HHHH---hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~---~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|++++-..+....+ ..+. ..++|+++++||+|+..... .+...++...+ ..+++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~----------------~~~~~~~s 143 (162)
T cd04123 80 YDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV----------------GAKHFETS 143 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc----------------CCEEEEEe
Confidence 999865433332222 2222 23689999999999864221 11112222111 13468899
Q ss_pred ecccCCcchHHHHHHhh
Q psy11896 155 AHIDSGKTTLTERILFY 171 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~ 171 (1043)
+++|.|++++++.+.+.
T Consensus 144 ~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 144 AKTGKGIEELFLSLAKR 160 (162)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998754
No 422
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.36 E-value=9e-12 Score=125.54 Aligned_cols=111 Identities=22% Similarity=0.202 Sum_probs=75.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|++|+|||||+++|+.... ... .+..+.......+.++ .+.+++||+||+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEE---------------------YDPTIEDSYRKTIVVDGETYTLDILDTAGQE 58 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcC---------------------cCCChhHeEEEEEEECCEEEEEEEEECCChH
Confidence 589999999999999999974321 000 0011111112223333 4678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchH-HHHHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~-t~~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
++.......++.+|++++|+|........ ....+..... .+.|+++|+||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 59 EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 99888888999999999999988643222 2222322221 4789999999999763
No 423
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.36 E-value=1.4e-12 Score=132.69 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=99.3
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcc-hHHHHHHHhhhcCEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVD-FTVEVERALRVLDGAILV 80 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~-~~~~~~~~~~~aD~iIlV 80 (1043)
|+.++ |++++||+|+..+...+.+..+..+.+. ......+..++ .++.+|||||+.. +...+..+++.+|++|+|
T Consensus 1 ki~vv-G~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVL-GASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEE-CCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 56677 9999999999877776666555545432 22233334444 4688999999985 455677889999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH-----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK-----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~-----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|+++..+.+... ....+. ..++|+++|+||+|+..... .+....+.+. .. .+++.
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------------~~---~~~~e 142 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASE-------------LG---CLFFE 142 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHH-------------cC---CEEEE
Confidence 9998654433222 222222 23789999999999853211 1111122111 11 25688
Q ss_pred eeecccC-CcchHHHHHHhh
Q psy11896 153 ISAHIDS-GKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~-Gi~~L~~~l~~~ 171 (1043)
+||++|. |++++++.++..
T Consensus 143 ~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 143 VSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred eCCCCCchhHHHHHHHHHHH
Confidence 9999995 999999998754
No 424
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.36 E-value=1e-11 Score=126.01 Aligned_cols=112 Identities=21% Similarity=0.151 Sum_probs=73.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+++++.. .... . +.+.. + ........+......+.||||||+..|
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~--~~~~------~--------~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG--TFIE------K--------YDPTI---E-DFYRKEIEVDSSPSVLEILDTAGTEQF 62 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCC------C--------CCCch---h-heEEEEEEECCEEEEEEEEECCCcccc
Confidence 6999999999999999999732 1110 0 00000 0 011111112222346889999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++++|+|..+...-+....| ..... .++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 63 ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 88888888999999999999874332222222 22222 478999999999974
No 425
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.36 E-value=8.2e-13 Score=135.59 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=104.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|...++..+.+..+..| ++.+.....+..++ .++.+|||||+.++...+..+++.+|++|+|
T Consensus 1 ~k~~i~-G~~~~GKtsl~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLV-GDGAVGKTSLIVSYTTNGYPTEYVP-TAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 578888 9999999999888877777666554 33333333444444 4788999999999888888889999999999
Q ss_pred EeCCCCCchhHH--HHHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTL--TVNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~--~~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|.++..+.+.. ..+..+.. .++|+++++||+|+..... . ...+...-...+.. ..+. ......+++++
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~-~~~~~~~~~~~v~~~~~~~~a--~~~~~~~~~e~ 154 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN-V-LIQLARYGEKPVSQSRAKALA--EKIGACEYIEC 154 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh-H-HHHHhhcCCCCcCHHHHHHHH--HHhCCCeEEEE
Confidence 999865444332 22333333 3689999999999864211 0 00000000000000 0000 01122367899
Q ss_pred eecccCCcchHHHHHH
Q psy11896 154 SAHIDSGKTTLTERIL 169 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~ 169 (1043)
||++|.|++++++.+.
T Consensus 155 Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 155 SALTQKNLKEVFDTAI 170 (173)
T ss_pred eCCCCCCHHHHHHHHH
Confidence 9999999999998775
No 426
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.36 E-value=9.1e-12 Score=127.45 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=73.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|..|+|||||+++++... .. .+....+........+..+ ...+++|||||+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~-------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FD-------------------KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC-------------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 58999999999999999997321 10 0001111111111223333 3579999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHhc----CCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKRY----DVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~~----~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|+.+........-|. ...+. ..|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 61 RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 99888888899999999999998643333333332 22222 24689999999975
No 427
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.36 E-value=1.7e-12 Score=133.06 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=87.6
Q ss_pred EEEEEEEeeCCCCCCCCeEEEeccccccC----CcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCcccc--CChh
Q psy11896 699 GRVIGTLEPLPPSANTKLEFIDETVGTNV----PKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMV--DSNE 772 (1043)
Q Consensus 699 ~~v~~~~eP~~~~~~~~~~f~~~~~~~~l----~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~--~~~~ 772 (1043)
++-.|.+.|. +.+++.++|.+.+... +++++++|++||++|+.+|||+|+||+|++|+|.++..|.. ++..
T Consensus 73 ~~~Iw~fGP~---~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~ 149 (177)
T cd01681 73 ARKIWAFGPD---RTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGG 149 (177)
T ss_pred hCcEEEECCC---CCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCch
Confidence 3345667663 4667899998877655 78999999999999999999999999999999999999985 7889
Q ss_pred hHHHHHHHHHHHHHHHhcccccccccee
Q psy11896 773 ISFILAAHGAMKQAYEEGVWQILEPIMS 800 (1043)
Q Consensus 773 ~~~~~a~~~a~~~a~~~~~~~llEP~~~ 800 (1043)
++++.|+++||++|++++.++||||+|.
T Consensus 150 ~~~~~a~r~a~~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 150 GQIIPAARRACYAAFLLASPRLMEPMYL 177 (177)
T ss_pred hhHHHHHHHHHHHHHhhCCCEEEccccC
Confidence 9999999999999999999999999984
No 428
>PLN03110 Rab GTPase; Provisional
Probab=99.36 E-value=8.4e-12 Score=132.87 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=79.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDt 274 (1043)
+...+|+++|+.|+|||||+++|+...-.. +....+........+.++ ...++||||
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~---------------------~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt 68 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL---------------------ESKSTIGVEFATRTLQVEGKTVKAQIWDT 68 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC---------------------CCCCceeEEEEEEEEEECCEEEEEEEEEC
Confidence 356799999999999999999997321100 011112222222233333 358999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
||+.+|.......++.+|++|+|+|..+....+....| ..+.. .++|+++|.||+|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred CCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 99999988888889999999999999865443333333 22222 478999999999974
No 429
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.36 E-value=3.7e-12 Score=146.58 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=110.2
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec-CeeEEEEeCCCCcc-------hHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVD-------FTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~-------~~~~~~~~~~~aD 75 (1043)
++.++ |.+.+||+|.+.+.+.........|++|+.++.+.+.+. +.+|+||||||+.. +...+.+.++.+|
T Consensus 160 dVglV-G~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLV-GFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEE-cCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 45566 999999999876665554445567999999999999887 78999999999853 4456677788899
Q ss_pred EEEEEEeCCCC----CchhHHHHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 76 GAILVLCAVGG----VQSQTLTVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 76 ~iIlVvDa~~~----~~~~~~~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
++|+|+|++.. +......+...+.. .++|+++|+||+|+... ...++.+.+.+ .
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l---------------~ 301 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKL---------------G 301 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHh---------------C
Confidence 99999999742 11222333334433 47899999999998532 22223333321 1
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.+++++||+++.|+++|++.+...+..
T Consensus 302 -~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 302 -PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 367899999999999999999877654
No 430
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.36 E-value=9e-12 Score=126.44 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=74.7
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE-ecCeeEEEEcCCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL-WKDHNINIIDTPGHVD 279 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDtPG~~d 279 (1043)
+|+++|.+|+|||||+++|......... . .....|.........+. .....+.+|||||+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~--------------~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 64 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK--------------N---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--------------c---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH
Confidence 6899999999999999999732111100 0 00011111111112221 2346899999999988
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
|.......++.+|++++|+|..+.........| ..... .+.|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 65 YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 888888889999999999999864332222223 22222 358999999999975
No 431
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.36 E-value=2.7e-12 Score=133.47 Aligned_cols=153 Identities=8% Similarity=-0.070 Sum_probs=106.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
|+.++ |+.++||||....+..+.++.+..|.+..+... .+... ...+.+|||||+.++...+..+++.+|++|+|
T Consensus 2 ki~vv-G~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 2 KIVVV-GDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred eEEEE-CCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 67777 999999999998888888776665544443322 23333 34799999999999988888899999999999
Q ss_pred EeCCCCCchhHHH-HHH-HHH--hcCCCEEEEEecCCCCCCCH------HHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 81 LCAVGGVQSQTLT-VNR-QMK--RYDVPCIAFINKLDRLGADP------YRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~-~l~--~~~~piilvlNKiDl~~~~~------~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
+|+++..+.+... .|. .+. ..++|+++|+||+|+..... ....+++... ....++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~---------------~~~~~~ 144 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK---------------QGAFAY 144 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH---------------cCCcEE
Confidence 9998654433321 122 222 23689999999999864220 1111111111 112256
Q ss_pred eeeeecccCCcchHHHHHHhhcc
Q psy11896 151 IGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+.+||++|.|++++++.+...+-
T Consensus 145 ~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 145 LECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999886654
No 432
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.35 E-value=2.7e-12 Score=135.52 Aligned_cols=149 Identities=17% Similarity=0.110 Sum_probs=104.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-eEEEEeCCCCcch--------HHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHVDF--------TVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~~--------~~~~~~~~~~ 73 (1043)
+++.++ |..++||+|+....+.+.......++.|+++....+.+.+. .+.+|||||+.+. .......+..
T Consensus 42 ~~I~ii-G~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 120 (204)
T cd01878 42 PTVALV-GYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAE 120 (204)
T ss_pred CeEEEE-CCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhc
Confidence 566777 99999999998776666655566678888888877777665 8999999998431 1112334678
Q ss_pred cCEEEEEEeCCCCCchhHHH-HHHHH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 74 LDGAILVLCAVGGVQSQTLT-VNRQM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~-~~~~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+|++++|+|++++....... ....+ ...++|+++|+||+|+....... ..+ .....+
T Consensus 121 ~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~------~~~-------------~~~~~~ 181 (204)
T cd01878 121 ADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE------ERL-------------EAGRPD 181 (204)
T ss_pred CCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH------HHh-------------hcCCCc
Confidence 99999999998765444332 22223 23468999999999986532211 111 012246
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++++||++|.|++++++.+...
T Consensus 182 ~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 182 AVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred eEEEEcCCCCCHHHHHHHHHhh
Confidence 7899999999999999988753
No 433
>PRK00098 GTPase RsgA; Reviewed
Probab=99.35 E-value=3.3e-12 Score=142.13 Aligned_cols=150 Identities=21% Similarity=0.154 Sum_probs=93.1
Q ss_pred HhhhcCEEEEEEeCCCCCchhH--HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQT--LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~--~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
.+.++|.+++|+|+++...... ...+..+...++|+++|+||+|+.. +.+. ...+.+.+. ...
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~-~~~~-~~~~~~~~~------------~~g- 141 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD-DLEE-ARELLALYR------------AIG- 141 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC-CHHH-HHHHHHHHH------------HCC-
Confidence 3589999999999975432222 2333445667899999999999963 2221 122222111 011
Q ss_pred eeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCce
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRIS 227 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~ 227 (1043)
.+++++||+++.|+++|++.+. + +.++++|++|+|||||+|+|+.....
T Consensus 142 ~~v~~vSA~~g~gi~~L~~~l~---g--------------------------k~~~~~G~sgvGKStlin~l~~~~~~-- 190 (298)
T PRK00098 142 YDVLELSAKEGEGLDELKPLLA---G--------------------------KVTVLAGQSGVGKSTLLNALAPDLEL-- 190 (298)
T ss_pred CeEEEEeCCCCccHHHHHhhcc---C--------------------------ceEEEECCCCCCHHHHHHHHhCCcCC--
Confidence 3678999999999999887652 1 35899999999999999999843321
Q ss_pred eeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 228 EMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 228 ~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
..+.+... ..+.+.+|.......+.. ...++||||...
T Consensus 191 ~~g~v~~~-----------~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 191 KTGEISEA-----------LGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred CCcceecc-----------CCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 11222111 112233554444333322 247899999764
No 434
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.35 E-value=4e-12 Score=134.98 Aligned_cols=164 Identities=9% Similarity=-0.029 Sum_probs=109.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++|||+....+..+.++.+..|.+..+.. ..+..++ ..+.||||+|+..|...+..+++.+|++|+
T Consensus 1 ~~KIvvv-Gd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 1 RCKIVVV-GDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE
Confidence 4789888 99999999999999999998888886643332 3445544 468999999999999988899999999999
Q ss_pred EEeCCCCCchhHH-HHHHH-HH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcc---ccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQ-MK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWI---SNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~-l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++.-+.... ..|.. +. ..+.|+++|+||+|+.... . ....+.+.....+ ....+.. .....+.+.
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~-~-~~~~~~~~~~~pIs~e~g~~~ak--~~~~~~y~E 154 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL-A-TLRELSKQRLIPVTHEQGTVLAK--QVGAVSYVE 154 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch-h-hhhhhhhccCCccCHHHHHHHHH--HcCCCEEEE
Confidence 9999875433332 22322 22 2468999999999985421 1 1111111000000 0000110 112235577
Q ss_pred eeecccCC-cchHHHHHHhh
Q psy11896 153 ISAHIDSG-KTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~G-i~~L~~~l~~~ 171 (1043)
+||+++.| ++++|+.....
T Consensus 155 ~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 155 CSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred cCCCcCCcCHHHHHHHHHHH
Confidence 99999985 99999988764
No 435
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=4e-12 Score=132.42 Aligned_cols=154 Identities=16% Similarity=0.064 Sum_probs=107.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+++..+...+.+..+..+.++.+.....+..++ ..+.+|||||+.++...+...++.+|++|+|
T Consensus 1 ~ki~v~-G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVII-GDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence 578888 9999999999988888887765555555544444455444 4689999999999998999999999999999
Q ss_pred EeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++.-+......| ..+.. .++|+++++||+|+.+... ......+... . . .+++.+|
T Consensus 80 ~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~-------------~--~-~~~~evS 143 (188)
T cd04125 80 YDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDS-------------L--N-IPFFETS 143 (188)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHH-------------c--C-CeEEEEe
Confidence 999864332222211 22222 3578999999999864211 1111111111 1 1 2568899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+....-
T Consensus 144 a~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 144 AKQSINVEEAFILLVKLII 162 (188)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998877654
No 436
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.35 E-value=3.6e-12 Score=127.50 Aligned_cols=151 Identities=19% Similarity=0.107 Sum_probs=112.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||++.......+..+.+..+++|.+.....+..++ +.+.+|||||+.++...+....+.++.++.
T Consensus 1 ~~ki~~~-G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIV-GDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 3788899 9999999999888888888888999999998887788888 789999999999998888888888888888
Q ss_pred EEeCCCCCc-------hhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQ-------SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~-------~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
++|....+. .....+...+. .+.|+++++||+|+...... ......+. .....++++
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~---~~~~~~~~------------~~~~~~~~~ 143 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLK---THVAFLFA------------KLNGEPIIP 143 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhh---HHHHHHHh------------hccCCceEE
Confidence 888764311 11122222222 27899999999999653321 22222211 112235799
Q ss_pred eeecccCCcchHHHHHH
Q psy11896 153 ISAHIDSGKTTLTERIL 169 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~ 169 (1043)
+||++|.|++++++.+.
T Consensus 144 ~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 144 LSAETGKNIDSAFKIVE 160 (161)
T ss_pred eecCCCCCHHHHHHHhh
Confidence 99999999999988763
No 437
>KOG0464|consensus
Probab=99.35 E-value=2.5e-13 Score=145.87 Aligned_cols=112 Identities=52% Similarity=0.806 Sum_probs=105.5
Q ss_pred CccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHH
Q psy11896 20 NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 99 (1043)
Q Consensus 20 ~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~ 99 (1043)
.-.+++|.+..|+++|+|+......+.|+++++++||||||.+|.-++.+.++..|+++.|+|++.|+..|+..+|++..
T Consensus 72 dgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqad 151 (753)
T KOG0464|consen 72 DGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 151 (753)
T ss_pred CCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 100 RYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 100 ~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
++++|.+.++||||...++.+...+.++++++
T Consensus 152 k~~ip~~~finkmdk~~anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 152 KFKIPAHCFINKMDKLAANFENAVDSIEEKLG 183 (753)
T ss_pred ccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence 99999999999999988888877888888764
No 438
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.35 E-value=2e-11 Score=126.72 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=78.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|..++|||||+.++... ... .+....++.......+..++ ..+++||||
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~--~~~-------------------~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~ 63 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDG--STE-------------------SPYGYNMGIDYKTTTILLDGRRVKLQLWDTS 63 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC--CCC-------------------CCCCCcceeEEEEEEEEECCEEEEEEEEeCC
Confidence 4578999999999999999999631 110 00011122222222233344 688999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
|+.+|.......++.+|++|+|+|.....+-+...-| .++.+ .+.|+++|.||+|+.
T Consensus 64 G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 64 GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 9999998888888999999999999975444444333 22322 467999999999975
No 439
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.35 E-value=3.7e-12 Score=148.54 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=110.7
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH--------HHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV--------EVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~--------~~~~~~~ 72 (1043)
.+|+.++ |.+++||+|...+.+.... .....||+|++.....+.+++..+.+|||||+.++.. ....+++
T Consensus 203 g~kVvIv-G~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 203 GFKLAIV-GSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 3678888 9999999999777665432 3456799999999999999999999999999975432 2356788
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
.+|++++|+|++.+.+..+. .+..+...++|+++|+||+|+...+. +.+.+.+ . .+++.
T Consensus 282 ~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~~~~~~-------------~---~~~~~ 340 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EFFVSSK-------------V---LNSSN 340 (442)
T ss_pred hCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hhhhhhc-------------C---CceEE
Confidence 99999999999876655544 44455556899999999999964321 1111111 1 24578
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++ .|++++++.+.+.+.
T Consensus 341 vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHH
Confidence 99998 699999888876554
No 440
>PRK11058 GTPase HflX; Provisional
Probab=99.35 E-value=4.4e-12 Score=147.06 Aligned_cols=151 Identities=13% Similarity=0.054 Sum_probs=108.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe-eEEEEeCCCCcch--------HHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIIDTPGHVDF--------TVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~~--------~~~~~~~~~~ 73 (1043)
.++.++ |.+.+||+|.+.+.+.........+++|+++....+.+.+. .+.+|||||+.+. ...+...++.
T Consensus 198 p~ValV-G~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLV-GYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 456677 99999999998877776666778899999999988888765 8999999998431 2234566789
Q ss_pred cCEEEEEEeCCCCCchhHHH----HHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 74 LDGAILVLCAVGGVQSQTLT----VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~----~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
||++|+|+|++++....... ++..+...++|+++|+||+|+...... . +... . . ....
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~---~~~~-~-----------~--~~~~ 338 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R---IDRD-E-----------E--NKPI 338 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H---HHHH-h-----------c--CCCc
Confidence 99999999998765444332 233333346899999999998642111 1 1100 0 0 1112
Q ss_pred eeeeeecccCCcchHHHHHHhhc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++.+||++|.|+++|++.+...+
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHh
Confidence 47799999999999999998765
No 441
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.35 E-value=1.2e-12 Score=136.32 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=106.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
|+.++ |+.++||+|....+....++.+..|.+..... ..+..++ ..+.||||||+.++...+..+++.+|++|+|+
T Consensus 2 kiviv-G~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 2 KVVVL-GDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred EEEEE-CCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 67777 99999999999888888887776665543322 2233333 57999999999998877778899999999999
Q ss_pred eCCCCCchhHHH--HHHHHHh--cCCCEEEEEecCCCCCCCHHH-HHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTLT--VNRQMKR--YDVPCIAFINKLDRLGADPYR-VINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~~--~~~~l~~--~~~piilvlNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|.++.-+.+... .+..+.. .+.|+++|+||+|+....... .........-..-....+. ......+++.+||+
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~SAk 157 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA--KRINALRYLECSAK 157 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH--HHcCCCEEEEccCC
Confidence 988654443322 2223322 368999999999996532211 0000000000000000000 01122356889999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.+....
T Consensus 158 ~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 158 LNRGVNEAFTEAARVA 173 (189)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999987654
No 442
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.35 E-value=5.6e-12 Score=152.29 Aligned_cols=104 Identities=23% Similarity=0.275 Sum_probs=79.2
Q ss_pred EeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchHH--
Q psy11896 206 AHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE-- 283 (1043)
Q Consensus 206 G~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e-- 283 (1043)
|.+|+|||||+|+|+.... .....+|+|++.....+.++++.++++||||+.+|...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~---------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~ 59 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ---------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL 59 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC---------------------eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch
Confidence 7899999999999963311 02236789998888888899999999999999887542
Q ss_pred ---HHH-Hh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 284 ---VER-AL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 284 ---~~~-~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.+ .+ +.+|++++|+|+... ........++.+.++|+++|+||+|+.
T Consensus 60 ~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 60 EEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred HHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 222 22 468999999999873 233444556667899999999999974
No 443
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.34 E-value=1.4e-11 Score=131.20 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=74.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEcCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGH 277 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDtPG~ 277 (1043)
+|+++|..|+|||||+++|+... .. .+..+.++.+.....+.+. ...++||||||+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~~-------------------~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--FG-------------------KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CC-------------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 68999999999999999996321 00 0111112222222233332 468999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh------cCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~------~~~p~ivviNKiD~~ 332 (1043)
..|.......++.+|++|+|+|+.+.-.......| ..+.+ .+.|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 61 SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 88888888889999999999999864333322223 22222 235789999999985
No 444
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.34 E-value=1.2e-11 Score=129.33 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=73.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|.+|+|||||+++|+...-.... .....|.++.... +..++ ..+++|||||..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~------------------~~~t~~~~~~~~~--~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP------------------YQNTIGAAFVAKR--MVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC------------------cccceeeEEEEEE--EEECCEEEEEEEEECCCch
Confidence 6999999999999999999732110000 0011121221222 33333 467799999998
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|..+....+....| ..... .+.|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 62 RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred hhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 8877777778899999999999874333222222 22222 368999999999975
No 445
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.34 E-value=7.2e-12 Score=133.57 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=78.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|..|+|||||+++++... ... ......|+++.........+...+.+|||||+.
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~--f~~-----------------~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGE--FEK-----------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC--CCC-----------------ccCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 4689999999999999999986321 100 011122333332222222334689999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH--hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK--RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~--~~~~p~ivviNKiD~~ 332 (1043)
+|..-....++.+|++|+|+|..+....+...-|.. .. ..++|+++|.||+|+.
T Consensus 74 ~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 998777778899999999999997655444444422 11 2468999999999974
No 446
>KOG0075|consensus
Probab=99.34 E-value=1.6e-11 Score=114.75 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=113.6
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
.+.++ |.+..||+++...-....+.+.--| |+..+...++-++..+.+||.||+..|...|..+.+.++++++|+|+
T Consensus 22 el~lv-GLq~sGKtt~Vn~ia~g~~~edmip--tvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDa 98 (186)
T KOG0075|consen 22 ELSLV-GLQNSGKTTLVNVIARGQYLEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDA 98 (186)
T ss_pred eEEEE-eeccCCcceEEEEEeeccchhhhcc--cccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeec
Confidence 45566 9999999999766666444444444 67777777887888999999999999999999999999999999999
Q ss_pred CCC--CchhHHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 84 VGG--VQSQTLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 84 ~~~--~~~~~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
.+. ++....++...+.+ .++|++++.||+|++++-.. ..+.++++ +..-. -.-..++.||++..
T Consensus 99 ad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~---~~li~rmg-------L~sit-dREvcC~siScke~ 167 (186)
T KOG0075|consen 99 ADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK---IALIERMG-------LSSIT-DREVCCFSISCKEK 167 (186)
T ss_pred CCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH---HHHHHHhC-------ccccc-cceEEEEEEEEcCC
Confidence 862 23333444444432 58999999999999876332 22333332 22111 12246799999999
Q ss_pred CCcchHHHHHHhhcc
Q psy11896 159 SGKTTLTERILFYTG 173 (1043)
Q Consensus 159 ~Gi~~L~~~l~~~l~ 173 (1043)
.|++.+.+++.+...
T Consensus 168 ~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 168 VNIDITLDWLIEHSK 182 (186)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999998876543
No 447
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.34 E-value=4.1e-12 Score=129.71 Aligned_cols=152 Identities=16% Similarity=0.088 Sum_probs=103.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |.+++||+|...+...+.+..+..|. +.+.....+.+++ ..+.+|||||+.+|...+..+++.+|++++
T Consensus 1 ~~ki~li-G~~~~GKTsli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 1 DYKIVVL-GAGGVGKSALTVQFVQNVFIESYDPT-IEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL 78 (168)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhCCCCcccCCc-chheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence 4788888 99999999998777766665444442 2222233444444 478999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHH----HhcCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQM----KRYDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l----~~~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|.++....+.... ...+ ...++|+++++||+|+...... .....+.+. ....++++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 143 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ---------------WGNVPFYE 143 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH---------------cCCceEEE
Confidence 999886433222221 1212 2347899999999998643211 111111111 11135688
Q ss_pred eeecccCCcchHHHHHHh
Q psy11896 153 ISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~ 170 (1043)
+||++|.|++++++.+..
T Consensus 144 ~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 144 TSARKRTNVDEVFIDLVR 161 (168)
T ss_pred eeCCCCCCHHHHHHHHHH
Confidence 999999999999998874
No 448
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.34 E-value=8.8e-12 Score=127.89 Aligned_cols=111 Identities=15% Similarity=0.095 Sum_probs=73.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~~ 278 (1043)
+|+++|++|+|||||++++....- .. . +. ..........+..+ .+.+.+|||||+.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~------~--------~~------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PE------E--------YV------PTVFDHYAVSVTVGGKQYLLGLYDTAGQE 59 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC------C--------CC------CceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 699999999999999999973211 00 0 00 00000111122233 3568899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHH--hcCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~--~~~~p~ivviNKiD~~~ 333 (1043)
+|.......++.+|++++|+|..+.-..+... .| ..+. ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 60 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred cccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 98877777788999999999998754433221 22 2222 35789999999999864
No 449
>PRK13796 GTPase YqeH; Provisional
Probab=99.34 E-value=1e-11 Score=141.83 Aligned_cols=158 Identities=23% Similarity=0.190 Sum_probs=101.4
Q ss_pred HHHHHhhhcC-EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCC
Q psy11896 66 EVERALRVLD-GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEH 142 (1043)
Q Consensus 66 ~~~~~~~~aD-~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~ 142 (1043)
.+...+..+| .+++|+|+.+........+.+.. .++|+++|+||+|+...+ .++..+.+.... +.
T Consensus 61 ~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~----k~------ 128 (365)
T PRK13796 61 KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA----KE------ 128 (365)
T ss_pred HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH----Hh------
Confidence 3666777667 89999999875544444443332 268999999999996432 222211211111 11
Q ss_pred CCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 143 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 143 ~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
....+..++.+||++|.|+++|++.+..+.. -+++.++|.+|+|||||+|+|+..
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~-------------------------~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYRE-------------------------GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhcC-------------------------CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 1122235788999999999999999875421 146999999999999999999853
Q ss_pred cCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 223 TGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 223 ~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..... +.......+|+|.......+. ....++||||..
T Consensus 184 ~~~~~---------------~~~~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi~ 221 (365)
T PRK13796 184 ITGEK---------------DVITTSRFPGTTLDKIEIPLD---DGSFLYDTPGII 221 (365)
T ss_pred ccCcc---------------ceEEecCCCCccceeEEEEcC---CCcEEEECCCcc
Confidence 31100 001134478888876655442 225799999964
No 450
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.34 E-value=3.5e-12 Score=157.41 Aligned_cols=152 Identities=17% Similarity=0.148 Sum_probs=116.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH----------HHHHh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE----------VERAL 71 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~----------~~~~~ 71 (1043)
.+|+.++ |...+||||...+.+..+......||+|++...+.+.+++.++++|||||+.++... ...++
T Consensus 3 ~~~IaLv-G~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLI-GNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3567777 999999999977776655566677999999999999999999999999999875421 22232
Q ss_pred --hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 72 --RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 72 --~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
..+|++++|+|+++. ++....+.++.+.++|+++++||+|+.+. ......+.+++.++ .
T Consensus 82 ~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG----------------~ 143 (772)
T PRK09554 82 LSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG----------------C 143 (772)
T ss_pred hccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC----------------C
Confidence 378999999999863 34455667778889999999999998642 32233444444332 3
Q ss_pred eeeeeeecccCCcchHHHHHHhhc
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+++++||++|+|++++++.+....
T Consensus 144 pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 144 PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred CEEEEEeecCCCHHHHHHHHHHhh
Confidence 679999999999999999987654
No 451
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.34 E-value=1.2e-11 Score=126.80 Aligned_cols=111 Identities=17% Similarity=0.197 Sum_probs=76.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|..|+|||||+.+++... ... .+ ...-+... ...+.+++ ..+++|||||.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~--f~~--------------~~---~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~ 60 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS--FPD--------------YH---DPTIEDAY---KQQARIDNEPALLDILDTAGQ 60 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCC--------------Cc---CCcccceE---EEEEEECCEEEEEEEEeCCCc
Confidence 469999999999999999997321 100 00 00001011 11123333 57899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH----HhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~----~~~~~p~ivviNKiD~~ 332 (1043)
.+|......+++.+|++|+|+|..+..+.+...-| ... ...++|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 99988888899999999999999986655554422 122 22468999999999975
No 452
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.34 E-value=4.8e-12 Score=126.91 Aligned_cols=152 Identities=18% Similarity=0.122 Sum_probs=106.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe--cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW--KDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |.+++||+|+..+......+.+..+.++.+.....+.. ....+.+|||||+..+...+...++.+|++++|
T Consensus 1 ~~i~~~-G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLI-GDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 467777 99999999998887777777665565555555455554 346799999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
+|+++....... .....+.. .++|+++++||+|+..... ...+.+.+... ....+++.+||+
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------------~~~~~~~~~sa~ 145 (159)
T cd00154 80 YDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ-VSTEEAQQFAK-------------ENGLLFFETSAK 145 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccc-ccHHHHHHHHH-------------HcCCeEEEEecC
Confidence 999863322222 22223333 2589999999999952111 11122222211 012467899999
Q ss_pred ccCCcchHHHHHH
Q psy11896 157 IDSGKTTLTERIL 169 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~ 169 (1043)
++.|++++++.+.
T Consensus 146 ~~~~i~~~~~~i~ 158 (159)
T cd00154 146 TGENVEELFQSLA 158 (159)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999998875
No 453
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.33 E-value=9.9e-12 Score=124.74 Aligned_cols=152 Identities=12% Similarity=0.083 Sum_probs=105.8
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCC
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 84 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~ 84 (1043)
+.++ |..++||+|.........+..+..|.+..+. ..+..++..+.+|||||+.++...+..+++.+|++++|+|++
T Consensus 2 i~i~-G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLV-GLQNSGKTTLVNVIAGGQFSEDTIPTVGFNM--RKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEE-cCCCCCHHHHHHHHccCCCCcCccCCCCcce--EEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 4556 9999999999888887777777777555443 345667789999999999999999999999999999999998
Q ss_pred CCCchh-HHHHHHHH-H---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccC
Q psy11896 85 GGVQSQ-TLTVNRQM-K---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDS 159 (1043)
Q Consensus 85 ~~~~~~-~~~~~~~l-~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~ 159 (1043)
+..... ....+..+ . ..++|+++|+||+|+.+.... +.+...+. +.... ....+++++|+++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~-------~~~~~-~~~~~~~~~Sa~~~~ 147 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV---DELIEQMN-------LKSIT-DREVSCYSISCKEKT 147 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH---HHHHHHhC-------ccccc-CCceEEEEEEeccCC
Confidence 532211 11122222 1 247899999999998654221 11111111 11101 122467899999999
Q ss_pred CcchHHHHHHh
Q psy11896 160 GKTTLTERILF 170 (1043)
Q Consensus 160 Gi~~L~~~l~~ 170 (1043)
|++++++.+..
T Consensus 148 gi~~l~~~l~~ 158 (159)
T cd04159 148 NIDIVLDWLIK 158 (159)
T ss_pred ChHHHHHHHhh
Confidence 99999998864
No 454
>PLN03108 Rab family protein; Provisional
Probab=99.33 E-value=7e-12 Score=132.92 Aligned_cols=154 Identities=14% Similarity=0.030 Sum_probs=108.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||+.++ |+.++||+++........+.....+.++.+.....+.+++ ..+.+|||||+.++...+..+++.+|++|+
T Consensus 6 ~~kiviv-G~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 6 LFKYIII-GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4788888 9999999999888777777666666555555455555555 468899999999999889999999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++.-+......| ..+. ..++|+++++||+|+.... ..+..+.+.+. .. .+++.+
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~e~ 148 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-------------HG---LIFMEA 148 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHH-------------cC---CEEEEE
Confidence 9999864333332211 2122 2368999999999986421 11111122111 11 256889
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||+++.|++++++.+...+
T Consensus 149 Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 149 SAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999998887554
No 455
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.33 E-value=1.3e-11 Score=133.52 Aligned_cols=110 Identities=19% Similarity=0.178 Sum_probs=72.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|..|+|||||+++++... ... . ...++.+.....+..++ +.++||||+|+.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~--f~~------~--------------y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR--FEE------Q--------------YTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--CCC------C--------------CCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 69999999999999999997321 100 0 00000011111223333 678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHHh------------cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR------------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~~------------~~~p~ivviNKiD~~ 332 (1043)
+|......+++.+|++|+|+|..+...-+... .+.+... .++|+++|.||+|+.
T Consensus 60 ~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 60 PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred hhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 99877677788999999999998743322222 2222211 368999999999985
No 456
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.33 E-value=1.9e-11 Score=129.71 Aligned_cols=109 Identities=23% Similarity=0.173 Sum_probs=77.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+++++... . .++ ..|+........++.+.+.+|||||+..|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~--f---------------~~~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~ 57 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR--F---------------KDT-------VSTVGGAFYLKQWGPYNISIWDTAGREQF 57 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--C---------------CCC-------CCccceEEEEEEeeEEEEEEEeCCCcccc
Confidence 68999999999999999997321 0 000 01222222333456778999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHH---hcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMK---RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~---~~~~p~ivviNKiD~~~ 333 (1043)
.......++.+|++|+|+|+.+......... |..+. ..++|+++|.||+|+..
T Consensus 58 ~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 58 HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 8888888999999999999997543333322 22222 24579999999999864
No 457
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.32 E-value=7e-12 Score=131.11 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=104.4
Q ss_pred ccceeeeeecccccccCCccccCCChhh-hhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMEL-ERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~-e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.|+.++ |.+++||+|...+.+.+.+.. +..+.+........+..++. .+.+|||||+.++...+..+++.+|++++
T Consensus 1 ~ki~vv-G~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVML-GKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 377888 999999999988888777654 23332222222334555554 57799999999888888888999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh--cCCCEEEEEecCCCCCCCH-H-HH-HHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR--YDVPCIAFINKLDRLGADP-Y-RV-INQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~--~~~piilvlNKiDl~~~~~-~-~~-~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... .+..+.. .++|+++|+||+|+..... . .. .+.+.+... .. ..+++++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~----------~~---~~~~~~~ 146 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD----------EI---KAQHFET 146 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHH----------Hc---CCeEEEE
Confidence 99998643332222 2233332 2689999999999864221 0 00 111111100 01 1356889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|+++|++.+....-
T Consensus 147 Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 147 SSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999986653
No 458
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.32 E-value=1.5e-11 Score=128.05 Aligned_cols=113 Identities=21% Similarity=0.212 Sum_probs=75.4
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|..|+|||||+++++... .. . ...+..|.+.......+..+...+.+|||||+.+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~~---------------~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~ 62 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--FS---------------E--STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF 62 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC---------------C--CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 69999999999999999997221 10 0 00111122222222222223457889999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH---hcCCCeEEEEeccCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~ 332 (1043)
.......++.+|++++|+|..+.-.......|. ... ....|++++.||+|+.
T Consensus 63 ~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 63 RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 888888999999999999998754333332332 222 2357899999999976
No 459
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.32 E-value=2.8e-12 Score=131.84 Aligned_cols=154 Identities=17% Similarity=0.090 Sum_probs=110.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
+|+.++ |..++|||+.......+.... ..-|...+...+.+++..+.+||.+|+..+...|..+++.+|++|||+|
T Consensus 15 ~~ilil-Gl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvD 90 (175)
T PF00025_consen 15 IKILIL-GLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVD 90 (175)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEE
T ss_pred EEEEEE-CCCccchHHHHHHhhhccccc---cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEe
Confidence 566666 999999999977665544332 3336677778888899999999999999999999999999999999999
Q ss_pred CCCCC--chhHHHHHHHHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGGV--QSQTLTVNRQMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~~--~~~~~~~~~~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++.- .+....+...+. ..++|+++++||.|++++... +++...+. +..........++++||.+
T Consensus 91 ssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~---~~i~~~l~-------l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 91 SSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE---EEIKEYLG-------LEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH---HHHHHHTT-------GGGTTSSSCEEEEEEBTTT
T ss_pred cccceeecccccchhhhcchhhcccceEEEEeccccccCcchh---hHHHhhhh-------hhhcccCCceEEEeeeccC
Confidence 98532 222222333332 247899999999999765332 23333331 1111112345789999999
Q ss_pred cCCcchHHHHHHh
Q psy11896 158 DSGKTTLTERILF 170 (1043)
Q Consensus 158 g~Gi~~L~~~l~~ 170 (1043)
|+|+++.+++|.+
T Consensus 161 g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 161 GEGVDEGLEWLIE 173 (175)
T ss_dssp TBTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHh
Confidence 9999999888864
No 460
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.32 E-value=1.2e-11 Score=126.27 Aligned_cols=112 Identities=17% Similarity=0.073 Sum_probs=73.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEe--eeeEEEEecCeeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ--SAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~--~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+|+++|.+|+|||||+++|+...-... ...+... ............+.+|||||+.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~ 59 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTE----------------------YVPTVFDNYSATVTVDGKQVNLGLWDTAGQE 59 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----------------------CCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 689999999999999999974321000 0000011 1111222335679999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHH-HHHH--hcCCCeEEEEeccCCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMK--RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~-~~~~--~~~~p~ivviNKiD~~~~ 334 (1043)
+|.......++.+|++++|+|+.+....+.. ..| .... ..++|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 60 EYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred cccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 8866666667899999999999864332222 112 2222 235899999999998743
No 461
>KOG0070|consensus
Probab=99.32 E-value=7.4e-12 Score=123.47 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=114.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
.+++++ |..++|||+..+..-+.....- .| |+..+...+++.+.+|.+||..|+.+++..|..|+++.+++|||+|
T Consensus 18 ~~Ilml-GLD~AGKTTILykLk~~E~vtt-vP--TiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvD 93 (181)
T KOG0070|consen 18 MRILMV-GLDAAGKTTILYKLKLGEIVTT-VP--TIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVD 93 (181)
T ss_pred EEEEEE-eccCCCceeeeEeeccCCcccC-CC--ccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEe
Confidence 467777 9999999999777666554322 33 8888888999999999999999999999999999999999999999
Q ss_pred CCCC--CchhHHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGG--VQSQTLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~--~~~~~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++. +.+...++.+.+.. .+.|++++.||.|++++-.. .++.+.++ +..... ..+.+.+++|.+
T Consensus 94 S~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~---~ei~~~L~-------l~~l~~-~~w~iq~~~a~~ 162 (181)
T KOG0070|consen 94 SSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSA---AEITNKLG-------LHSLRS-RNWHIQSTCAIS 162 (181)
T ss_pred CCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCH---HHHHhHhh-------hhccCC-CCcEEeeccccc
Confidence 9863 33444455555543 36799999999999875321 22333221 111111 334678899999
Q ss_pred cCCcchHHHHHHhhc
Q psy11896 158 DSGKTTLTERILFYT 172 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l 172 (1043)
|+|+.+-++++...+
T Consensus 163 G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 163 GEGLYEGLDWLSNNL 177 (181)
T ss_pred cccHHHHHHHHHHHH
Confidence 999988888876554
No 462
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.32 E-value=8.8e-12 Score=130.62 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=109.3
Q ss_pred CccceeeeeecccccccCCccccCCC--hhhhhhcCCccccceEEEEecCeeEEEEeCCCCc----------chHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDS--MELERQRGITIQSAATYTLWKDHNINIIDTPGHV----------DFTVEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~--~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~----------~~~~~~~~ 69 (1043)
+.|+.++ |..++||+|...+.+.+. ......+|+|+......+ +.++.||||||+. ++......
T Consensus 24 ~~~v~iv-G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 24 GPEIAFA-GRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 3577788 999999999977777653 344567788877654332 4789999999963 23333344
Q ss_pred Hhhh---cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 70 ALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 70 ~~~~---aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+++. ++++++|+|++.+....+..+..++...++|+++++||+|+.+.. .++..+.+...+..
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~------------- 166 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKF------------- 166 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh-------------
Confidence 4444 468899999887777666667777777899999999999986532 22233334333220
Q ss_pred cceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
...+++++||+++.|++++++.+...+.
T Consensus 167 ~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 167 GDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 0246789999999999999999987654
No 463
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.32 E-value=4e-12 Score=130.46 Aligned_cols=159 Identities=12% Similarity=0.093 Sum_probs=101.4
Q ss_pred eeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 8 IHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 8 ~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
+.|+.++||+|+...+..+.++.+..+.+.... ...+..++. .+.+|||||+.++......+++.+|++|+|+|.++
T Consensus 3 i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 81 (174)
T smart00174 3 VVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS 81 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC
Confidence 449999999999888888777766665443222 223444443 69999999999988888888999999999999986
Q ss_pred CCchhHHH--HHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeeeeeccc
Q psy11896 86 GVQSQTLT--VNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 86 ~~~~~~~~--~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
.-+.+... ....+.. .++|+++|+||+|+..... . .+.+...-...+.. ..+. ......+++++||++|
T Consensus 82 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~-~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 82 PASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKS-T-LRELSKQKQEPVTYEQGEALA--KRIGAVKYLECSALTQ 157 (174)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChh-h-hhhhhcccCCCccHHHHHHHH--HHcCCcEEEEecCCCC
Confidence 43333221 2222322 3789999999999864211 0 01111000000000 0000 0112235688999999
Q ss_pred CCcchHHHHHHhh
Q psy11896 159 SGKTTLTERILFY 171 (1043)
Q Consensus 159 ~Gi~~L~~~l~~~ 171 (1043)
.|++++++.+...
T Consensus 158 ~~v~~lf~~l~~~ 170 (174)
T smart00174 158 EGVREVFEEAIRA 170 (174)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998754
No 464
>KOG0459|consensus
Probab=99.32 E-value=2.2e-12 Score=139.58 Aligned_cols=208 Identities=18% Similarity=0.234 Sum_probs=156.1
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC--
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-- 87 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-- 87 (1043)
.....++.||+..|++|+..+|+..|.|+.....+|+....+|++.|+|||..|...++....+||..++|+.++.+-
T Consensus 117 eake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefe 196 (501)
T KOG0459|consen 117 EAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFE 196 (501)
T ss_pred HHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhh
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999997432
Q ss_pred -----chhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 88 -----QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 88 -----~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
..|+.++...++..++. .|+++||||-+..++ .+..++..+.+..+++..++...... ..+|+|+.+|.+
T Consensus 197 tgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~---~f~p~sg~tG~~ 273 (501)
T KOG0459|consen 197 TGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDK---HFVPVSGLTGAN 273 (501)
T ss_pred cccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCc---eeeecccccccc
Confidence 34777777777777765 889999999875432 34567777777777776565544433 347899999999
Q ss_pred cchHHH-HHHhhccc-cccccccccccccccc-cCCCCccc-eee--EEEEEeecCCcccHHhHHh
Q psy11896 161 KTTLTE-RILFYTGR-ISEMHETSRWISNESL-SEHKPIEY-IRN--IGISAHIDSGKTTLTERIL 220 (1043)
Q Consensus 161 i~~L~~-~l~~~l~~-~~~~~~~~~~~~~~~~-~~~~~~~~-ir~--i~ivG~~~~GKTTL~~~Ll 220 (1043)
+.+..+ ...||.++ +.++++....+..... +.+.+... .+- -.+.|..-||+-+.-..|+
T Consensus 274 ~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~KykdmGTvv~GKvEsGsi~kg~~lv 339 (501)
T KOG0459|consen 274 VKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKYKDMGTVVGGKVESGSIKKGQQLV 339 (501)
T ss_pred hhhcccccCCcccCCccceehhccCcccccCCCCEEeehhhhccccceEEEEEecccceecCCeEE
Confidence 988874 67788777 6677776443333322 22222221 122 2467888888766655554
No 465
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.31 E-value=2.6e-11 Score=124.66 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=75.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee-eEEEEecC--eeEEEEcCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-ATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDtPG 276 (1043)
.+|+++|..|+|||||+.++.... ... .+ . .|+... ...+..++ ..++||||||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~--------------~~-----~--pt~~~~~~~~~~~~~~~~~l~i~Dt~G 58 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPS--------------EY-----V--PTVFDNYAVTVMIGGEPYTLGLFDTAG 58 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC--------------CC-----C--CceeeeeEEEEEECCEEEEEEEEECCC
Confidence 469999999999999999997321 100 00 0 011111 11233444 6788999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHH-HHH--hcCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNR-QMK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~-~~~--~~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++|+|+|..+...-+.. ..|. ... ..++|+++|.||+|+..
T Consensus 59 ~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 59 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred ccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 999987777788999999999999875444333 2342 222 23689999999999853
No 466
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.31 E-value=1.1e-11 Score=118.15 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=81.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|.+|+|||||+++|+... ... .....+.|.......+.+++..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~--~~~------------------~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK--LAK------------------VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST--SSE------------------ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccc--ccc------------------ccccccceeeeeeeeeeeceeeEEEEeCCCCccc
Confidence 58999999999999999998422 111 1224456666655667788999999999997652
Q ss_pred ---------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEec
Q psy11896 281 ---------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINK 328 (1043)
Q Consensus 281 ---------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNK 328 (1043)
...+.+.+..+|++++|+|+.+........+++++. .+.|+++|+||
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 61 ESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp SHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred chhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 223555568999999999988855566677777775 88999999998
No 467
>PLN03108 Rab family protein; Provisional
Probab=99.31 E-value=2.8e-11 Score=128.34 Aligned_cols=117 Identities=18% Similarity=0.106 Sum_probs=77.5
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
+...+|+++|+.|+|||||+++|+...-... + ...-+.+.......+......+++|||||
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~----------------~---~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G 64 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------------H---DLTIGVEFGARMITIDNKPIKLQIWDTAG 64 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCC----------------C---CCCccceEEEEEEEECCEEEEEEEEeCCC
Confidence 3457899999999999999999973211000 0 00112222222222222235688999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HH---hcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~ 332 (1043)
+.+|.......++.+|++++|+|+...-..+....|.. .. ..++|++++.||+|+.
T Consensus 65 ~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 99998888888899999999999987443333322321 22 2468999999999975
No 468
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.31 E-value=3.4e-12 Score=126.32 Aligned_cols=137 Identities=17% Similarity=0.108 Sum_probs=89.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCc----chHHHHHHHhhhcCEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV----DFTVEVERALRVLDGAI 78 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~----~~~~~~~~~~~~aD~iI 78 (1043)
+|+.++ |++++||+|...+...+.+. .. .|. .+.+.. .+|||||+. .+...+...++.+|+++
T Consensus 1 ~kv~li-G~~~vGKSsL~~~l~~~~~~--~~--~t~-----~~~~~~---~~iDt~G~~~~~~~~~~~~~~~~~~ad~vi 67 (142)
T TIGR02528 1 KRIMFI-GSVGCGKTTLTQALQGEEIL--YK--KTQ-----AVEYND---GAIDTPGEYVENRRLYSALIVTAADADVIA 67 (142)
T ss_pred CeEEEE-CCCCCCHHHHHHHHcCCccc--cc--cce-----eEEEcC---eeecCchhhhhhHHHHHHHHHHhhcCCEEE
Confidence 578888 99999999997766655432 11 121 223322 789999983 23333445689999999
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeeccc
Q psy11896 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHID 158 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g 158 (1043)
+|+|++++.+.....+.. ..+.|+++|+||+|+.+... ..+...+... . ....+++++||++|
T Consensus 68 lv~d~~~~~s~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~----~--------~~~~~~~~~Sa~~~ 130 (142)
T TIGR02528 68 LVQSATDPESRFPPGFAS---IFVKPVIGLVTKIDLAEADV--DIERAKELLE----T--------AGAEPIFEISSVDE 130 (142)
T ss_pred EEecCCCCCcCCChhHHH---hccCCeEEEEEeeccCCccc--CHHHHHHHHH----H--------cCCCcEEEEecCCC
Confidence 999998776655443322 23469999999999864221 1122222111 0 11235688999999
Q ss_pred CCcchHHHHHH
Q psy11896 159 SGKTTLTERIL 169 (1043)
Q Consensus 159 ~Gi~~L~~~l~ 169 (1043)
.|++++++.+.
T Consensus 131 ~gi~~l~~~l~ 141 (142)
T TIGR02528 131 QGLEALVDYLN 141 (142)
T ss_pred CCHHHHHHHHh
Confidence 99999998874
No 469
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.31 E-value=5.1e-12 Score=127.61 Aligned_cols=149 Identities=13% Similarity=0.044 Sum_probs=97.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|....+..+.++.+..| |.......+..++ ..+.+|||+|+.+ ..+++.+|++++|
T Consensus 1 ~ki~vv-G~~gvGKTsli~~~~~~~f~~~~~~--~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIV-GNLQSGKSALVHRYLTGSYVQLESP--EGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFV 72 (158)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhCCCCCCCCC--CccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence 577788 9999999999988887777655433 2222234456666 4699999999975 2456889999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
+|.++.-+.+.. ..+..+.. .++|+++|.||.|+.............+.+.. ......++.+||
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~-----------~~~~~~~~e~SA 141 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA-----------DMKRCSYYETCA 141 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH-----------HhCCCcEEEEec
Confidence 999976554442 22333332 35799999999998431111111111111110 011135578999
Q ss_pred cccCCcchHHHHHHh
Q psy11896 156 HIDSGKTTLTERILF 170 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~ 170 (1043)
++|.|++++++.++.
T Consensus 142 k~~~~i~~~f~~~~~ 156 (158)
T cd04103 142 TYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999998864
No 470
>KOG0095|consensus
Probab=99.30 E-value=8.9e-12 Score=116.26 Aligned_cols=156 Identities=15% Similarity=0.039 Sum_probs=112.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+++| |+.++||+-..-.+.-.-+|.-.-..+.++.....++.++. ++.+|||+|+++|.+.+.++++.|+++|+
T Consensus 7 lfkivlv-gnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 7 LFKIVLV-GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eEEEEEE-ccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 6899999 99999999998888888888666555555666666666654 79999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|.|.+..++.....- ++.+.+ .++--|+|.||+|+.+ ..+.-+++-+.+... .... ...+||
T Consensus 86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d--rrevp~qigeefs~~---------qdmy---fletsa 151 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD--RREVPQQIGEEFSEA---------QDMY---FLETSA 151 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh--hhhhhHHHHHHHHHh---------hhhh---hhhhcc
Confidence 999986665544332 222222 2334679999999864 222333333333210 1112 245999
Q ss_pred cccCCcchHHHHHHhhc
Q psy11896 156 HIDSGKTTLTERILFYT 172 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l 172 (1043)
+..+|++.|+..++-.+
T Consensus 152 kea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 152 KEADNVEKLFLDLACRL 168 (213)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 99999999999887544
No 471
>KOG1489|consensus
Probab=99.30 E-value=2.1e-11 Score=128.96 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=88.1
Q ss_pred CCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCee-EE
Q psy11896 192 EHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN-IN 270 (1043)
Q Consensus 192 ~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~-i~ 270 (1043)
...+...|-.+++||.+|+|||||+++|..+.+.+.. +..+|+........|++.. +.
T Consensus 189 ~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~---------------------YaFTTL~P~iG~v~yddf~q~t 247 (366)
T KOG1489|consen 189 IELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAH---------------------YAFTTLRPHIGTVNYDDFSQIT 247 (366)
T ss_pred EEEEeeeecccceecCCCCcHHHHHHHhhccCCcccc---------------------cceeeeccccceeeccccceeE
Confidence 3445556788999999999999999999877665533 4457888877777887764 99
Q ss_pred EEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCCCc----chHHHHHHHHHHh-----cCCCeEEEEeccCCC
Q psy11896 271 IIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGV----QSQTLTVNRQMKR-----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 271 liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~g~----~~~t~~~~~~~~~-----~~~p~ivviNKiD~~ 332 (1043)
+-|.||.+. ...+..+-+..|+..++|||...+. -.+...++..+.. ...|.++|+||||.+
T Consensus 248 VADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 248 VADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 999999654 3334566677799999999999762 2223333444332 356999999999986
No 472
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.30 E-value=2.2e-11 Score=126.87 Aligned_cols=115 Identities=14% Similarity=0.036 Sum_probs=74.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
++|+++|..|+|||||+.+++... ... .+ .+..+... ............++||||||+.+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~--~~~--------------~~---~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~ 60 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY--FPQ--------------VY---EPTVFENY-VHDIFVDGLHIELSLWDTAGQEE 60 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCC--------------cc---CCcceeee-EEEEEECCEEEEEEEEECCCChh
Confidence 579999999999999999997321 100 00 00001111 11111222346789999999998
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHh--cCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~--~~~p~ivviNKiD~~~~ 334 (1043)
|.......++.+|++|+|+|..+--..+... .| ..+.. .+.|+++|.||+|+...
T Consensus 61 ~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 61 FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 8776666788999999999988754443332 22 22222 37899999999998643
No 473
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.30 E-value=1.6e-11 Score=128.65 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=75.2
Q ss_pred EEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchHHH
Q psy11896 205 SAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV 284 (1043)
Q Consensus 205 vG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~ 284 (1043)
+|..|+|||||+.+++.. .... .+ ...-|++.......+..+...++||||||+.+|....
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f~~--------------~~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EFEK--------------KY---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR 61 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CCCC--------------CC---CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 589999999999999721 1100 00 0111222222222222235689999999999999988
Q ss_pred HHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HHh--cCCCeEEEEeccCCC
Q psy11896 285 ERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 285 ~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~ 332 (1043)
..+++.+|++|+|+|.....+.+....|.. +.+ .++|+++|.||+|+.
T Consensus 62 ~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 62 DGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred HHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 899999999999999998766555555543 333 478999999999974
No 474
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.30 E-value=3e-11 Score=125.62 Aligned_cols=109 Identities=15% Similarity=-0.009 Sum_probs=72.9
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee-eEEEEe---cCeeEEEEcCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-ATYTLW---KDHNINIIDTPG 276 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~---~~~~i~liDtPG 276 (1043)
+|+++|..|+|||||+++|+...-. . ++ . .|+... ...... ....+.+|||||
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~--------------~~-----~--~t~~~~~~~~i~~~~~~~~~l~i~Dt~G 58 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--E--------------EY-----V--PTVFENYVTNIQGPNGKIIELALWDTAG 58 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--C--------------CC-----C--CeeeeeeEEEEEecCCcEEEEEEEECCC
Confidence 6999999999999999999732110 0 00 0 011111 111222 235789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH-H--hcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM-K--RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~-~--~~~~p~ivviNKiD~~ 332 (1043)
+.+|.......++.+|++++|+|+.+....+... .|... . ..++|+++|.||.|+.
T Consensus 59 ~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 59 QEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred chhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 9999887777889999999999998754333332 23222 1 2468999999999975
No 475
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.29 E-value=6.5e-12 Score=129.03 Aligned_cols=164 Identities=12% Similarity=0.038 Sum_probs=104.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
++|+.++ |..++||||.......+.++.+..|.+.. .....+..++ .++.+|||||+.++...+..+++.+|++++
T Consensus 1 ~~ki~ii-G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (175)
T cd01870 1 RKKLVIV-GDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 78 (175)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCcccc-ceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE
Confidence 4788888 99999999998888888777665554432 2223444444 468999999999888777778899999999
Q ss_pred EEeCCCCCchhHH-H-HHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcc---ccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-T-VNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWI---SNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~-~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++.-+.... . ....+.. .++|+++|+||+|+..... ..+.+........ ....+. ......+++.
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~i~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 154 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH--TRRELAKMKQEPVKPEEGRDMA--NKIGAFGYME 154 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh--hhhhhhhccCCCccHHHHHHHH--HHcCCcEEEE
Confidence 9998853222222 1 1122222 3789999999999864221 1111111000000 000000 0112346789
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 155 ~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 155 CSAKTKEGVREVFEMATRA 173 (175)
T ss_pred eccccCcCHHHHHHHHHHH
Confidence 9999999999999988743
No 476
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.29 E-value=5.3e-12 Score=152.53 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=108.2
Q ss_pred eecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH------HHHHh--hhcCEEEEEE
Q psy11896 10 IKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE------VERAL--RVLDGAILVL 81 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~------~~~~~--~~aD~iIlVv 81 (1043)
|++++||||...+.+..+......||+|++.....+++++.++++|||||+.++... +..++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 678899999988777777777789999999999999999999999999999875432 23333 3789999999
Q ss_pred eCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 82 Da~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
|++.. ++......++.+.++|+++|+||+|+.+.. .....+.+.+.++ .+++++||++|.|
T Consensus 81 Dat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg----------------~pvv~tSA~tg~G 142 (591)
T TIGR00437 81 DASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLG----------------VPVVPTSATEGRG 142 (591)
T ss_pred cCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcC----------------CCEEEEECCCCCC
Confidence 99852 334444555667899999999999985422 1111233333221 3679999999999
Q ss_pred cchHHHHHHhh
Q psy11896 161 KTTLTERILFY 171 (1043)
Q Consensus 161 i~~L~~~l~~~ 171 (1043)
++++++.+...
T Consensus 143 i~eL~~~i~~~ 153 (591)
T TIGR00437 143 IERLKDAIRKA 153 (591)
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 477
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=2.5e-11 Score=119.38 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=111.8
Q ss_pred cceeeeeecccccccCCccccCCChh--------hhh---hcCCccccceEEEEecC-eeEEEEeCCCCcchHHHHHHHh
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSME--------LER---QRGITIQSAATYTLWKD-HNINIIDTPGHVDFTVEVERAL 71 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~--------~e~---~~G~T~~~~~~~~~~~~-~~i~liDTPG~~~~~~~~~~~~ 71 (1043)
|++++ |..++||+++.-+ ..|... ... ++.+|+-.-++...+++ +.+.|+|||||.+|.-+|....
T Consensus 12 KIvv~-G~~~agKtTfv~~-~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~ 89 (187)
T COG2229 12 KIVVI-GPVGAGKTTFVRA-LSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILS 89 (187)
T ss_pred eEEEE-cccccchhhHHHH-hhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHh
Confidence 45555 7777777776433 333331 222 33488888888888876 8999999999999999999999
Q ss_pred hhcCEEEEEEeCCCCCchhHHHHHHHHHhcC-CCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 72 ~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~-~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+.++++|+++|++.+.......+.+.+...+ +|+++++||.|+.++.+. +..+.+... ....+
T Consensus 90 ~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~---------------~~~~~ 154 (187)
T COG2229 90 RGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLE---------------LLSVP 154 (187)
T ss_pred CCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhc---------------cCCCc
Confidence 9999999999999887776677777777777 999999999999876544 222222211 12357
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+++++|..++|..+.++.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 8999999999987777666543
No 478
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.29 E-value=1.2e-11 Score=126.83 Aligned_cols=153 Identities=14% Similarity=0.058 Sum_probs=102.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||++........... . ...|.......+.+.+..+.+|||||+.++...+..+++.+|++++|+
T Consensus 14 ~~~v~i~-G~~g~GKStLl~~l~~~~~~-~--~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 14 EPRILIL-GLDNAGKTTILKQLASEDIS-H--ITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccEEEEE-ccCCCCHHHHHHHHhcCCCc-c--cCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 3677788 99999999996655543322 1 122333444566677889999999999999888999999999999999
Q ss_pred eCCCCCchhH-HHHH-H---HHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT-LTVN-R---QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~-~~~~-~---~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ...+ . .....++|+++++||+|+.+.... +.+.+.++ +.. ......+++++||+
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~i~~~l~-------~~~-~~~~~~~~~~~Sa~ 158 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA---EEIAEALN-------LHD-LRDRTWHIQACSAK 158 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH---HHHHHHcC-------Ccc-cCCCeEEEEEeECC
Confidence 9985321111 1111 1 122347899999999998653321 22222221 111 11123457899999
Q ss_pred ccCCcchHHHHHH
Q psy11896 157 IDSGKTTLTERIL 169 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~ 169 (1043)
+|.|++++++++.
T Consensus 159 ~~~gi~~~~~~l~ 171 (173)
T cd04155 159 TGEGLQEGMNWVC 171 (173)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999875
No 479
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.29 E-value=2.3e-11 Score=122.99 Aligned_cols=155 Identities=19% Similarity=0.128 Sum_probs=108.4
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcch--------HHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF--------TVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~--------~~~~~~~~~~ 73 (1043)
.++.++ |..++||+|...+...... .....+++|.......+...+..+.+|||||+... .......+..
T Consensus 4 ~~i~~~-G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 4 GFVAIV-GRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eEEEEE-CCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 456666 9999999998655443322 23344566766666666666788999999998642 2345567889
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++.........+...+...+.|+++|+||+|+... .... ......+. ......+++++
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~~~-~~~~~~~~-----------~~~~~~~~~~~ 149 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-KEDL-LPLLEKLK-----------ELGPFAEIFPI 149 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc-HHHH-HHHHHHHH-----------hccCCCceEEE
Confidence 99999999999775666666667777778999999999998632 2222 22222221 11223567999
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
|++++.|++++++.+...
T Consensus 150 s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 150 SALKGENVDELLEEIVKY 167 (168)
T ss_pred EeccCCChHHHHHHHHhh
Confidence 999999999999988653
No 480
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.28 E-value=3.3e-11 Score=123.19 Aligned_cols=115 Identities=14% Similarity=-0.012 Sum_probs=75.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
++.+++++|..|+|||||+++++... ... ..+ ...-+..... ..+.+++ ..+.++||+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~--f~~-------------~~~---~~T~~~~~~~--~~~~~~~~~~~l~~~d~~ 62 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRS--FSL-------------NAY---SPTIKPRYAV--NTVEVYGQEKYLILREVG 62 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCC--CCc-------------ccC---CCccCcceEE--EEEEECCeEEEEEEEecC
Confidence 46889999999999999999997321 100 000 0011111111 1233334 578899999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH-hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK-RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~-~~~~p~ivviNKiD~~ 332 (1043)
|...|......+++.+|++++|+|+.+....+.. ..+.... ..++|+++|+||+|+.
T Consensus 63 g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 63 EDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred CcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 9998877777778999999999999874322221 2222221 2368999999999975
No 481
>KOG0079|consensus
Probab=99.28 E-value=5.1e-12 Score=117.92 Aligned_cols=156 Identities=17% Similarity=0.066 Sum_probs=117.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||+.|+ ||+++||++....+.-|.+.......+..|.....+..+|. ++.||||+|++.|...+..+++..+++++
T Consensus 8 LfkllIi-gDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 8 LFKLLII-GDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHee-cCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 5788888 99999999999999999999998888888888888887764 79999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHHHHHHhc---CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 80 VLCAVGGVQSQTLTVNRQMKRY---DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~~l~~~---~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|.|.+.+-+.....-|..-.+. .+|-++|.||.|.+........+. +. |..++ . .+++.+||+
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dA-r~----~A~~m------g---ie~FETSaK 152 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDA-RA----FALQM------G---IELFETSAK 152 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHH-HH----HHHhc------C---chheehhhh
Confidence 9999976554443333222222 357889999999875321111111 11 11111 1 345779999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
...|++..+..|....
T Consensus 153 e~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 153 ENENVEAMFHCITKQV 168 (198)
T ss_pred hcccchHHHHHHHHHH
Confidence 9999999999887544
No 482
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.28 E-value=1.3e-11 Score=131.86 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=98.8
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEe--cCeeEEEEeCCCCcchHHHHHHHhh-hcCEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLW--KDHNINIIDTPGHVDFTVEVERALR-VLDGAI 78 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~-~aD~iI 78 (1043)
||+.++ |+.++||||.......+.+. .+..+....+.....+.. ....+.+|||||+..+.. ..+++ .+|+++
T Consensus 1 ~KI~lv-G~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVML-GSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTE--DSCMQYQGDAFV 77 (221)
T ss_pred CEEEEE-CCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHH--hHHhhcCCCEEE
Confidence 688888 99999999998888776664 333332222333333444 346799999999983322 23455 899999
Q ss_pred EEEeCCCCCchhH-HHHHHHHHh----cCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~-~~~~~~l~~----~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++.-+... ...+..+.. .++|+|+|+||+|+...... +....+... .. .+++
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~-------------~~---~~~~ 141 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVV-------------FD---CKFI 141 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHH-------------cC---CeEE
Confidence 9999986533322 222333332 36899999999998643211 111111111 11 2468
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++||++|.|++++++.+...+.
T Consensus 142 e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 142 ETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EecCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999987654
No 483
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.28 E-value=1e-11 Score=129.78 Aligned_cols=151 Identities=13% Similarity=0.018 Sum_probs=95.6
Q ss_pred CCccceeeeeecccccccCCccccCC------ChhhhhhcCCcc-ccceE----------EEEecCeeEEEEeCCCCcch
Q psy11896 1 MEHKVKIIHIKQEQVRGKDNVGAVMD------SMELERQRGITI-QSAAT----------YTLWKDHNINIIDTPGHVDF 63 (1043)
Q Consensus 1 ~~~k~~i~~~~~~~gk~s~~~~~~~d------~~~~e~~~G~T~-~~~~~----------~~~~~~~~i~liDTPG~~~~ 63 (1043)
+.+|+.++ |+.++||++...++..+ .+..+..|.+.. +.... .+.....++.||||+|+.+.
T Consensus 1 ~~~Kiv~v-G~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 1 ETIKCVVV-GDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK 79 (195)
T ss_pred CceEEEEE-CCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh
Confidence 35899999 99999999998644332 234455554421 21111 11222457999999999763
Q ss_pred HHHHHHHhhhcCEEEEEEeCCCCCchhHHH-HH-HHHHh--cCCCEEEEEecCCCCCCCH--------------------
Q psy11896 64 TVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLGADP-------------------- 119 (1043)
Q Consensus 64 ~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~-~~-~~l~~--~~~piilvlNKiDl~~~~~-------------------- 119 (1043)
....+++.+|++|+|+|.++..+..... .| ..+.. .+.|+++|+||+|+.....
T Consensus 80 --~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 --DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred --hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 3345789999999999998755444332 23 22332 3679999999999853210
Q ss_pred -HHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 120 -YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 120 -~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
.+..+.+.+. .. .+.+.+||++|.|++++++.++.
T Consensus 158 ~~~e~~~~a~~-------------~~---~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 158 PPETGRAVAKE-------------LG---IPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred CHHHHHHHHHH-------------hC---CEEEEcCCCCCCCHHHHHHHHHH
Confidence 0001111111 11 24577999999999999998874
No 484
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.28 E-value=6.1e-12 Score=129.11 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=104.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.++.+..|.+. +.....+..++ +.+.+|||||+.++...+..+++.+|++++|
T Consensus 1 ~ki~i~-G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVV-GDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 578888 9999999999888877777655555332 23233444554 3578999999999888888889999999999
Q ss_pred EeCCCCCchhHHH--HHHHHH--hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT--VNRQMK--RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~--~~~~l~--~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|..+.-+.+... ....+. ..++|+++|+||+|+.+.... ...+.......+.. ..+. ......+++.+
T Consensus 79 ~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~ 154 (174)
T cd04135 79 FSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKT--LARLNDMKEKPVTVEQGQKLA--KEIGAHCYVEC 154 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhh--HHHHhhccCCCCCHHHHHHHH--HHcCCCEEEEe
Confidence 9998654333221 222232 357899999999998643211 11111000000000 0000 11222356889
Q ss_pred eecccCCcchHHHHHHh
Q psy11896 154 SAHIDSGKTTLTERILF 170 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~ 170 (1043)
||++|.|++++++.+..
T Consensus 155 Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 155 SALTQKGLKTVFDEAIL 171 (174)
T ss_pred cCCcCCCHHHHHHHHHH
Confidence 99999999999998874
No 485
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.27 E-value=2e-11 Score=125.49 Aligned_cols=114 Identities=26% Similarity=0.225 Sum_probs=83.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
++-.+|.++|..||||||++++|.. +.... ...|.......+.+++..++++|.+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~----------------------~~pT~g~~~~~i~~~~~~~~~~d~gG 67 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISE----------------------TIPTIGFNIEEIKYKGYSLTIWDLGG 67 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEE----------------------EEEESSEEEEEEEETTEEEEEEEESS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--ccccc----------------------cCcccccccceeeeCcEEEEEEeccc
Confidence 3457899999999999999999962 11111 01133344456778999999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHH-H---hcCCCeEEEEeccCCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQM-K---RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~-~---~~~~p~ivviNKiD~~~~ 334 (1043)
+..+...+..++..+|++|+|||+.+.- ..+....+..+ . ..++|+++++||.|..++
T Consensus 68 ~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 68 QESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp SGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred cccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 9888888888899999999999999632 22233333332 2 246899999999998764
No 486
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.27 E-value=4.8e-11 Score=126.55 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=73.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEcCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPG 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDtPG 276 (1043)
.+|+++|..|+|||||+++|+... ... .. .+.+..+.....+.+. ...+++|||||
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~------------~~-------~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G 61 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAE------------VS-------DPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC------------CC-------CceeceEEEEEEEEECCCCEEEEEEEeCCc
Confidence 679999999999999999997321 100 00 0111112212222221 35789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
+..|.......++.+|++++|+|..+.-.-....-| ....+ ...|++++.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 62 QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred chhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 999988888888999999999999874322222222 22221 345778899999975
No 487
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.27 E-value=4.1e-11 Score=123.98 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=72.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|..++|||||+.+++... ... + ..+.-|..... ..+..++ ..+.+|||+|+.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~--f~~--------------~---~~~T~g~~~~~--~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE--FDE--------------D---YIQTLGVNFME--KTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--------------C---CCCccceEEEE--EEEEECCEEEEEEEEeCCCch
Confidence 68999999999999999996321 000 0 01111222222 2233333 678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
.|......+++.+|++++|+|+.+....+...-| ..+.+ ...| ++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 61 EFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred hHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 9988888888999999999999875433332223 22322 2345 7889999985
No 488
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.27 E-value=5.7e-11 Score=122.04 Aligned_cols=114 Identities=17% Similarity=0.068 Sum_probs=74.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+++++|..|+|||||+.+++... ... .+.+ ..+-.. .....+..+...+.+|||||+.+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f~~--------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--FPG--------------EYIP---TVFDNY-SANVMVDGKPVNLGLWDTAGQED 61 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC--------------cCCC---cceeee-EEEEEECCEEEEEEEEECCCchh
Confidence 369999999999999999997311 100 0000 000000 01111222336788999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHH-HH--hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQ-MK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~-~~--~~~~p~ivviNKiD~~~ 333 (1043)
|......+++.+|++|+|+|..+.-+.+.. ..|.. .. ..+.|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 988777888999999999999874433333 22322 22 23689999999999853
No 489
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.27 E-value=9.9e-11 Score=118.65 Aligned_cols=111 Identities=19% Similarity=0.116 Sum_probs=73.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCCC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHV 278 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~~ 278 (1043)
+|+++|..|+|||||+.+++.. .... +....+........+..++ ..+.+|||||..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN--EFHS-------------------SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC--CCCC-------------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 5899999999999999999621 1100 0011111111222233343 578899999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
+|.......++.+|++++|+|..+.-.-+...-| .... ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 61 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred hHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9988888889999999999998864322222222 2111 2367999999999975
No 490
>KOG0086|consensus
Probab=99.27 E-value=7.9e-12 Score=117.14 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=112.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+||..++ |..+.||+-..+.++-..+.+.....+.++....++..++. ++.||||+|+++|.+-+.++++.|-++++
T Consensus 9 LfKfl~i-G~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 9 LFKFLVI-GSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hheeEEe-ccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 5899999 99999999999999999998887777777777777776654 79999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHHH----HHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 80 VLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~----~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
|.|++..-+.....-| +.+...++-++++.||.||........++. .. + .....+.+ ..+||
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEA-s~-F---------aqEnel~f---lETSa 153 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SR-F---------AQENELMF---LETSA 153 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHH-Hh-h---------hcccceee---eeecc
Confidence 9999854333333222 222334556889999999954222112211 11 1 11122222 45999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|+|+++.+-.+...
T Consensus 154 ~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 154 LTGENVEEAFLKCART 169 (214)
T ss_pred cccccHHHHHHHHHHH
Confidence 9999999987665543
No 491
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.27 E-value=1.9e-11 Score=126.21 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=106.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||||+..+.....+.....|.+ .......+..++ +.+.+|||||+.++...+..++..+|++++|
T Consensus 2 ~kv~l~-G~~g~GKTtl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (180)
T cd04137 2 RKIAVL-GSRSVGKSSLTVQFVEGHFVESYYPTI-ENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILV 79 (180)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhCCCccccCcch-hhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence 578888 999999999988777666655555533 222234445544 4689999999999988888999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++....+... .+..+. ..++|+++|+||+|+..... ......+.+. +. .+++++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~~~ 143 (180)
T cd04137 80 YSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAES-------------WG---AAFLES 143 (180)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHH-------------cC---CeEEEE
Confidence 9998644333222 222222 24679999999999864211 1111122111 11 357889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|+.++++.+.+...
T Consensus 144 Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 144 SARENENVEEAFELLIEEIE 163 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987665
No 492
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.27 E-value=1.7e-11 Score=123.71 Aligned_cols=142 Identities=16% Similarity=0.081 Sum_probs=92.1
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCc----chHHHHHHHhhhcCEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV----DFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~----~~~~~~~~~~~~aD~iIl 79 (1043)
|+.++ |..++||+|.... ..+..... .....+.+... .+|||||+. ++...+..+++.+|++++
T Consensus 3 ~i~~i-G~~~~GKstl~~~-l~~~~~~~--------~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFV-GAVGAGKTTLFNA-LQGNYTLA--------RKTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEE-CCCCCCHHHHHHH-HcCCCccC--------ccceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 45555 9999999998666 34433211 11222233332 379999983 455556677899999999
Q ss_pred EEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccC
Q psy11896 80 VLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDS 159 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~ 159 (1043)
|+|++++.+.....+... ..++|+++++||+|+.+.+.+...+.+.+ + .. ..+++++||++|.
T Consensus 71 v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~-~-------------~~-~~p~~~~Sa~~g~ 133 (158)
T PRK15467 71 VHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLE-T-------------GF-EEPIFELNSHDPQ 133 (158)
T ss_pred EEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHH-c-------------CC-CCCEEEEECCCcc
Confidence 999987654433333222 24689999999999975443322222211 1 11 1478999999999
Q ss_pred CcchHHHHHHhhccc
Q psy11896 160 GKTTLTERILFYTGR 174 (1043)
Q Consensus 160 Gi~~L~~~l~~~l~~ 174 (1043)
|+++|++.+......
T Consensus 134 gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 134 SVQQLVDYLASLTKQ 148 (158)
T ss_pred CHHHHHHHHHHhchh
Confidence 999999999876653
No 493
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.26 E-value=4e-11 Score=123.17 Aligned_cols=112 Identities=15% Similarity=0.022 Sum_probs=71.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
++|+++|+.|+|||||+.+++...-.. . +. ...+... ...+.++ ...+.+|||||+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--------~--------~~---~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~ 59 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--------V--------YV---PTVFENY---VADIEVDGKQVELALWDTAGQ 59 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------CC---Cccccce---EEEEEECCEEEEEEEEeCCCc
Confidence 579999999999999999997421100 0 00 0001011 1122333 356889999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHH-HHHh--cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNR-QMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~-~~~~--~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|...--..... ..|. .... .++|+++|.||+|+..
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 60 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 88877666677899999999998853221111 1222 2222 4789999999999863
No 494
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.26 E-value=1.7e-11 Score=118.42 Aligned_cols=97 Identities=26% Similarity=0.227 Sum_probs=67.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC---
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG--- 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG--- 276 (1043)
++|.++|.+++|||||+++|........+ |. .+.|.+ ++|||||
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K-------------------------Tq-----~i~~~~---~~IDTPGEyi 48 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK-------------------------TQ-----AIEYYD---NTIDTPGEYI 48 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc-------------------------cc-----eeEecc---cEEECChhhe
Confidence 57999999999999999999633221111 11 122332 3599999
Q ss_pred -CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 277 -HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 -~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+..|...+......+|.+++|.||.+....-. -..+...+.|+|-||||+|+.
T Consensus 49 E~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 49 ENPRFYHALIVTAQDADVVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred eCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCc
Confidence 34455556666689999999999997532221 223445689999999999987
No 495
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.26 E-value=1.3e-10 Score=117.97 Aligned_cols=109 Identities=18% Similarity=0.248 Sum_probs=74.9
Q ss_pred EEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc-
Q psy11896 202 IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF- 280 (1043)
Q Consensus 202 i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df- 280 (1043)
|+++|+.|+|||||++.|+...... . .+...+.|..... +.+. ..+.++||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~-~------------------~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~ 59 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA-R------------------TSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAK 59 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee-e------------------ecCCCCcceeEEE--EEcc-CeEEEecCCCccccc
Confidence 7999999999999999997311110 0 1112333333222 2233 28999999997653
Q ss_pred ---------hHHHHHHh---HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 281 ---------TVEVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 281 ---------~~e~~~~l---~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
...+...+ ..++++++++|...........+++.+...+.|+++++||+|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 60 VSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred cCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 22223333 34578899999998777777778888888899999999999985
No 496
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.25 E-value=5.8e-11 Score=127.07 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=87.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
..++|.|.|++|+|||||+.+++.....+.. ++.+|-.....+++++..++++|||||.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~---------------------YPFTTK~i~vGhfe~~~~R~QvIDTPGl 225 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP---------------------YPFTTKGIHVGHFERGYLRIQVIDTPGL 225 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCC---------------------CCccccceeEeeeecCCceEEEecCCcc
Confidence 3578999999999999999999866555433 5667888888899999999999999998
Q ss_pred CCch--------HHHHHHhH-hcCeEEEEEeCCC----CcchHHHHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 278 VDFT--------VEVERALR-VLDGAILVLCAVG----GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 278 ~df~--------~e~~~~l~-~~D~~ilVvda~~----g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
-|-. .....|++ ..+++++++|.++ .++.|....-+.-...+.|+++|+||+|....
T Consensus 226 LDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 226 LDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE 295 (346)
T ss_pred cCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch
Confidence 7632 22456775 5567788999985 23444443333334567899999999998743
No 497
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.25 E-value=5.9e-11 Score=123.89 Aligned_cols=114 Identities=13% Similarity=0.010 Sum_probs=75.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..++|||||+.+++... ... .+ .+.-|.... ....+..+...+++|||||+.+
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~~--------------~~---~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~ 63 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FPK--------------EY---IPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEE 63 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCc--------------CC---CCceEeeeE-EEEEECCEEEEEEEEECCCchh
Confidence 479999999999999999997321 100 00 000011110 1111222346789999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHH-HH--hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQ-MK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~-~~--~~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++|+|+|..+...-+... .|.. .. ..++|+++|.||.|+..
T Consensus 64 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 64 YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 9887778889999999999998754444332 2432 22 24789999999999863
No 498
>KOG1532|consensus
Probab=99.25 E-value=5.9e-12 Score=129.84 Aligned_cols=202 Identities=18% Similarity=0.226 Sum_probs=118.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeee------------------ecCCccccccccchhhhhhcCceEeeeeEE
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHE------------------VRGKDNVGAVMDSMELERQRGITIQSAATY 261 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~------------------v~~~~~~~~~~d~~~~e~~~giTi~~~~~~ 261 (1043)
.-|.++|..|+||||++.+|..+...-...+- +++.-.+..++......+..||+...+...
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~ 99 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFA 99 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHH
Confidence 45889999999999999999865433222111 111111222233333445556544333221
Q ss_pred EEe-----------cCeeEEEEcCCCCCC-chHH-----HHHHh--HhcCeEEEEEeCCCCcchHHHH-----HHHHHHh
Q psy11896 262 TLW-----------KDHNINIIDTPGHVD-FTVE-----VERAL--RVLDGAILVLCAVGGVQSQTLT-----VNRQMKR 317 (1043)
Q Consensus 262 ~~~-----------~~~~i~liDtPG~~d-f~~e-----~~~~l--~~~D~~ilVvda~~g~~~~t~~-----~~~~~~~ 317 (1043)
..+ ....+.||||||+++ |... ...++ .-.-++++|+|....-.+.|.. ....+.+
T Consensus 100 tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk 179 (366)
T KOG1532|consen 100 TKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK 179 (366)
T ss_pred HHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh
Confidence 111 235799999999876 3322 22233 3344568899988665555543 3466678
Q ss_pred cCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHH
Q psy11896 318 YDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKK 397 (1043)
Q Consensus 318 ~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~ 397 (1043)
.++|.|+|.||.|..+..+ +++++..
T Consensus 180 tklp~ivvfNK~Dv~d~~f--a~eWm~D---------------------------------------------------- 205 (366)
T KOG1532|consen 180 TKLPFIVVFNKTDVSDSEF--ALEWMTD---------------------------------------------------- 205 (366)
T ss_pred ccCCeEEEEecccccccHH--HHHHHHH----------------------------------------------------
Confidence 9999999999999987654 2222211
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhC
Q psy11896 398 EAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYL 470 (1043)
Q Consensus 398 ~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~l 470 (1043)
.+..++ ++-+.+..++.......++..+++...| ..+++||.+|.|.+.++.+|...+
T Consensus 206 -fE~Fqe----Al~~~~~~y~s~l~~SmSL~leeFY~~l----------rtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 206 -FEAFQE----ALNEAESSYMSNLTRSMSLMLEEFYRSL----------RTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred -HHHHHH----HHHhhccchhHHhhhhHHHHHHHHHhhC----------ceEEEecccCCcHHHHHHHHHHHH
Confidence 111122 2222233334444444455555555444 478899999999999999887654
No 499
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.25 E-value=5.1e-11 Score=119.25 Aligned_cols=150 Identities=16% Similarity=0.109 Sum_probs=107.5
Q ss_pred eecccccccCCccccCCChh-hhhhcCCccccceEEEEec-CeeEEEEeCCCCcchH-------HHHHHHhhhcCEEEEE
Q psy11896 10 IKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWK-DHNINIIDTPGHVDFT-------VEVERALRVLDGAILV 80 (1043)
Q Consensus 10 ~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~~~-------~~~~~~~~~aD~iIlV 80 (1043)
|..+.||+|...+.+..... ....+++|.......+... +..+.+|||||+.++. ..+...++.+|++++|
T Consensus 3 G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v 82 (163)
T cd00880 3 GRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFV 82 (163)
T ss_pred CCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEE
Confidence 88899999996665544333 5567778888777776665 6789999999987543 4556688999999999
Q ss_pred EeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 81 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+|+..........+.......++|+++|+||+|+................ .......+++++||+++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 83 VDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLI-----------LLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhh-----------cccccCCceEEEeeeccCC
Confidence 99998766666654556667889999999999987533221111000000 0122345789999999999
Q ss_pred cchHHHHHHh
Q psy11896 161 KTTLTERILF 170 (1043)
Q Consensus 161 i~~L~~~l~~ 170 (1043)
++++++.+..
T Consensus 152 v~~l~~~l~~ 161 (163)
T cd00880 152 IDELREALIE 161 (163)
T ss_pred HHHHHHHHHh
Confidence 9999988864
No 500
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.25 E-value=3.9e-11 Score=118.63 Aligned_cols=108 Identities=23% Similarity=0.148 Sum_probs=76.9
Q ss_pred EEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceE-eeeeEEEE--ecCeeEEEEcCCCCCCc
Q psy11896 204 ISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI-QSAATYTL--WKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 204 ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi-~~~~~~~~--~~~~~i~liDtPG~~df 280 (1043)
++|++|+|||||+++|........ ....|. ........ ..+..+.+|||||+.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 58 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE----------------------EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF 58 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc----------------------ccccchhheeeEEEEECCEEEEEEEEecCChHHH
Confidence 579999999999999974432100 111111 11111222 23678999999999998
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.......++.+|++++|+|+..+........+ ......+.|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 59 RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 88888888999999999999987665555443 334456889999999999864
Done!