Query psy11896
Match_columns 1043
No_of_seqs 567 out of 4780
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 21:43:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 100.0 3E-128 1E-132 1194.3 69.9 685 193-1024 7-707 (709)
2 2rdo_7 EF-G, elongation factor 100.0 3E-124 1E-128 1152.4 76.9 681 195-1025 6-702 (704)
3 2xex_A Elongation factor G; GT 100.0 5E-123 2E-127 1140.5 77.0 683 194-1025 5-690 (693)
4 1dar_A EF-G, elongation factor 100.0 6E-123 2E-127 1139.9 68.9 680 194-1023 7-689 (691)
5 2dy1_A Elongation factor G; tr 100.0 8E-115 3E-119 1064.7 71.9 653 196-1026 6-662 (665)
6 3j25_A Tetracycline resistance 100.0 5E-119 2E-123 1096.8 16.5 616 198-1018 1-617 (638)
7 1n0u_A EF-2, elongation factor 100.0 2E-110 7E-115 1047.9 52.3 674 195-1034 15-831 (842)
8 3vqt_A RF-3, peptide chain rel 100.0 6.8E-86 2.3E-90 788.4 34.2 484 195-704 27-523 (548)
9 2ywe_A GTP-binding protein LEP 100.0 2.9E-73 9.8E-78 679.6 47.2 462 195-1013 2-483 (600)
10 3cb4_D GTP-binding protein LEP 100.0 2.5E-72 8.5E-77 673.5 49.3 458 197-1013 2-478 (599)
11 2h5e_A Peptide chain release f 100.0 1.7E-69 5.9E-74 644.2 37.8 460 197-681 11-477 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 2E-69 6.8E-74 642.7 36.1 461 196-681 10-476 (528)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 1.9E-37 6.6E-42 337.2 16.1 196 568-1019 2-209 (332)
14 2hjg_A GTP-binding protein ENG 100.0 6.4E-36 2.2E-40 350.7 18.0 278 2-333 3-300 (436)
15 4dcu_A GTP-binding protein ENG 100.0 2.9E-34 9.8E-39 338.6 18.7 277 3-333 24-320 (456)
16 1mky_A Probable GTP-binding pr 100.0 1.6E-33 5.4E-38 330.6 24.0 281 4-333 3-306 (439)
17 1g7s_A Translation initiation 100.0 3.3E-33 1.1E-37 335.5 16.1 329 199-622 5-373 (594)
18 3j2k_7 ERF3, eukaryotic polype 100.0 2.2E-31 7.5E-36 311.3 28.9 280 195-585 13-327 (439)
19 2c78_A Elongation factor TU-A; 100.0 1.1E-30 3.9E-35 303.3 25.3 268 198-581 10-305 (405)
20 1jny_A EF-1-alpha, elongation 100.0 1.4E-30 4.9E-35 304.8 22.9 274 197-581 4-314 (435)
21 1d2e_A Elongation factor TU (E 100.0 8.6E-31 3E-35 303.2 20.1 266 199-581 3-287 (397)
22 3mca_A HBS1, elongation factor 100.0 1E-30 3.5E-35 315.4 15.3 276 195-585 173-489 (592)
23 2elf_A Protein translation elo 100.0 1.2E-29 4.2E-34 289.2 19.6 239 200-581 22-274 (370)
24 1r5b_A Eukaryotic peptide chai 100.0 2.4E-29 8.2E-34 296.4 21.6 276 197-581 41-353 (467)
25 3avx_A Elongation factor TS, e 100.0 3.9E-29 1.3E-33 309.2 23.2 268 197-581 294-578 (1289)
26 3p26_A Elongation factor 1 alp 100.0 1.6E-28 5.4E-33 291.3 27.6 280 198-585 32-362 (483)
27 1kk1_A EIF2gamma; initiation o 100.0 8.2E-29 2.8E-33 288.2 24.6 252 196-581 7-313 (410)
28 1zun_B Sulfate adenylate trans 100.0 1.9E-28 6.5E-33 286.9 26.3 273 197-581 22-323 (434)
29 1f60_A Elongation factor EEF1A 100.0 1.4E-28 4.9E-33 289.1 24.3 273 198-582 6-326 (458)
30 3izq_1 HBS1P, elongation facto 100.0 2.8E-28 9.5E-33 294.9 22.3 286 197-585 165-496 (611)
31 1s0u_A EIF-2-gamma, translatio 100.0 2.4E-27 8.2E-32 275.5 23.5 251 197-581 6-311 (408)
32 1wb1_A Translation elongation 99.9 4.7E-28 1.6E-32 286.0 12.7 258 198-581 18-281 (482)
33 1zo1_I IF2, translation initia 99.9 9.5E-29 3.2E-33 289.5 4.6 300 198-631 3-333 (501)
34 3sjy_A Translation initiation 99.9 1.5E-26 5.2E-31 268.3 21.4 262 198-581 7-305 (403)
35 3izy_P Translation initiation 99.9 1.1E-27 3.8E-32 282.7 3.9 249 199-581 4-256 (537)
36 3j25_A Tetracycline resistance 99.9 1.1E-23 3.9E-28 256.7 11.0 110 22-131 39-148 (638)
37 4fn5_A EF-G 1, elongation fact 99.9 6.8E-21 2.3E-25 235.4 35.7 111 22-132 50-167 (709)
38 2rdo_7 EF-G, elongation factor 99.9 1.3E-19 4.3E-24 223.0 36.8 129 3-132 11-164 (704)
39 1dar_A EF-G, elongation factor 99.9 1.7E-20 5.8E-25 230.5 25.6 127 3-130 13-157 (691)
40 2xex_A Elongation factor G; GT 99.8 6.5E-20 2.2E-24 225.4 25.9 150 3-167 11-178 (693)
41 2dy1_A Elongation factor G; tr 99.8 3.3E-19 1.1E-23 218.4 23.1 126 4-131 11-154 (665)
42 3j2k_7 ERF3, eukaryotic polype 99.7 2.8E-18 9.5E-23 200.5 13.3 175 3-181 18-233 (439)
43 3vqt_A RF-3, peptide chain rel 99.7 1.4E-17 4.9E-22 198.8 15.6 111 22-132 72-182 (548)
44 3iev_A GTP-binding protein ERA 99.7 1.1E-16 3.7E-21 178.4 17.2 115 198-332 9-135 (308)
45 1wf3_A GTP-binding protein; GT 99.7 7.7E-17 2.6E-21 178.6 15.0 116 198-333 6-131 (301)
46 3ec1_A YQEH GTPase; atnos1, at 99.7 6.9E-18 2.4E-22 192.5 6.2 243 52-350 51-306 (369)
47 3h2y_A GTPase family protein; 99.7 1.4E-17 4.9E-22 189.6 7.5 238 59-350 55-305 (368)
48 3izy_P Translation initiation 99.7 1.3E-17 4.5E-22 196.9 6.3 163 2-173 4-167 (537)
49 3cb4_D GTP-binding protein LEP 99.7 2.2E-16 7.6E-21 189.3 15.7 158 3-174 5-182 (599)
50 3tr5_A RF-3, peptide chain rel 99.7 6.6E-17 2.3E-21 192.0 11.0 128 3-131 14-163 (528)
51 1zun_B Sulfate adenylate trans 99.7 8.6E-17 2.9E-21 188.0 11.5 173 3-181 25-232 (434)
52 3qq5_A Small GTP-binding prote 99.7 6.4E-17 2.2E-21 186.4 10.2 119 195-335 30-156 (423)
53 2ywe_A GTP-binding protein LEP 99.7 1.9E-16 6.5E-21 189.4 14.2 157 4-174 8-184 (600)
54 3p26_A Elongation factor 1 alp 99.7 1.1E-16 3.8E-21 189.6 11.8 166 3-174 34-241 (483)
55 2lkc_A Translation initiation 99.6 2E-16 6.9E-21 161.0 9.7 118 198-336 7-124 (178)
56 1ega_A Protein (GTP-binding pr 99.6 1.4E-16 4.6E-21 177.0 9.0 115 198-333 7-130 (301)
57 4dhe_A Probable GTP-binding pr 99.6 5E-16 1.7E-20 164.6 12.8 118 197-333 27-158 (223)
58 2xtp_A GTPase IMAP family memb 99.6 3.3E-17 1.1E-21 178.4 3.3 202 198-424 21-257 (260)
59 2dyk_A GTP-binding protein; GT 99.6 5.1E-16 1.8E-20 155.0 11.5 115 199-333 1-122 (161)
60 1jny_A EF-1-alpha, elongation 99.6 1.7E-16 5.8E-21 185.5 7.6 166 3-173 7-212 (435)
61 2lkc_A Translation initiation 99.6 1.7E-16 5.8E-21 161.5 6.1 163 2-173 8-170 (178)
62 1r5b_A Eukaryotic peptide chai 99.6 2.3E-16 7.7E-21 185.8 7.6 168 3-174 44-254 (467)
63 1wf3_A GTP-binding protein; GT 99.6 8.6E-16 2.9E-20 170.2 11.8 155 3-174 8-173 (301)
64 3iby_A Ferrous iron transport 99.6 5.9E-16 2E-20 167.6 10.1 110 200-332 2-123 (256)
65 3izq_1 HBS1P, elongation facto 99.6 3.6E-16 1.2E-20 189.0 9.3 167 2-174 167-375 (611)
66 1f60_A Elongation factor EEF1A 99.6 2.1E-16 7E-21 185.6 6.9 164 3-172 8-210 (458)
67 3iev_A GTP-binding protein ERA 99.6 1.2E-15 4.3E-20 169.9 12.6 161 3-178 11-186 (308)
68 1wb1_A Translation elongation 99.6 5.1E-16 1.7E-20 183.2 9.9 161 3-173 20-188 (482)
69 1puj_A YLQF, conserved hypothe 99.6 2.4E-15 8.2E-20 164.8 14.4 174 54-279 3-177 (282)
70 2dyk_A GTP-binding protein; GT 99.6 9.5E-16 3.2E-20 153.1 9.8 152 2-172 1-160 (161)
71 2c78_A Elongation factor TU-A; 99.6 1.1E-15 3.9E-20 177.1 11.3 164 3-173 12-211 (405)
72 1svi_A GTP-binding protein YSX 99.6 5.6E-15 1.9E-19 152.8 14.5 117 195-333 19-148 (195)
73 1zd9_A ADP-ribosylation factor 99.6 1E-14 3.5E-19 150.2 16.2 116 196-334 19-139 (188)
74 3i8s_A Ferrous iron transport 99.6 1.3E-15 4.4E-20 166.9 9.3 110 200-332 4-125 (274)
75 1kk1_A EIF2gamma; initiation o 99.6 2.8E-15 9.6E-20 174.0 12.5 160 3-173 11-199 (410)
76 3mca_A HBS1, elongation factor 99.6 8.3E-17 2.8E-21 194.2 -0.5 137 22-163 227-372 (592)
77 1d2e_A Elongation factor TU (E 99.6 1.2E-15 4E-20 176.3 8.6 164 3-173 4-194 (397)
78 1s0u_A EIF-2-gamma, translatio 99.6 3.4E-15 1.2E-19 173.1 12.1 160 3-173 9-197 (408)
79 1mky_A Probable GTP-binding pr 99.6 3.1E-15 1E-19 175.2 11.8 113 200-332 2-123 (439)
80 1zj6_A ADP-ribosylation factor 99.6 1.2E-14 4E-19 149.5 14.7 111 199-333 16-131 (187)
81 3t1o_A Gliding protein MGLA; G 99.6 3.6E-15 1.2E-19 154.2 10.8 128 197-333 12-149 (198)
82 1upt_A ARL1, ADP-ribosylation 99.6 8.3E-15 2.8E-19 147.8 13.0 113 198-334 6-123 (171)
83 3k53_A Ferrous iron transport 99.6 5.7E-15 2E-19 161.6 12.7 111 199-332 3-122 (271)
84 4bas_A ADP-ribosylation factor 99.6 1.2E-14 4E-19 150.8 14.3 119 194-334 12-142 (199)
85 1r8s_A ADP-ribosylation factor 99.6 2.8E-14 9.7E-19 142.9 16.5 109 201-333 2-115 (164)
86 2h57_A ADP-ribosylation factor 99.6 1.7E-14 5.9E-19 148.7 14.9 114 198-333 20-140 (190)
87 2fg5_A RAB-22B, RAS-related pr 99.6 1.1E-14 3.9E-19 150.4 13.3 117 197-332 21-141 (192)
88 4dhe_A Probable GTP-binding pr 99.6 4.9E-15 1.7E-19 156.9 10.3 165 3-174 30-211 (223)
89 3pqc_A Probable GTP-binding pr 99.6 2.2E-14 7.4E-19 148.0 14.9 115 196-333 20-147 (195)
90 3tkl_A RAS-related protein RAB 99.6 2.4E-14 8.4E-19 148.0 15.2 116 197-333 14-135 (196)
91 2h5e_A Peptide chain release f 99.6 1.2E-14 4.2E-19 172.7 14.7 128 3-131 14-163 (529)
92 3a1s_A Iron(II) transport prot 99.6 6.1E-15 2.1E-19 159.9 10.7 112 198-332 4-123 (258)
93 1fzq_A ADP-ribosylation factor 99.6 6.3E-14 2.2E-18 143.4 17.7 113 198-334 15-132 (181)
94 2efe_B Small GTP-binding prote 99.6 2.5E-14 8.4E-19 145.8 14.4 117 198-333 11-131 (181)
95 4dkx_A RAS-related protein RAB 99.6 4.1E-15 1.4E-19 156.7 8.8 155 2-173 13-175 (216)
96 2hxs_A RAB-26, RAS-related pro 99.6 3.3E-14 1.1E-18 144.5 15.2 114 198-332 5-128 (178)
97 2hup_A RAS-related protein RAB 99.6 3.6E-14 1.2E-18 147.9 15.5 119 193-332 23-147 (201)
98 2il1_A RAB12; G-protein, GDP, 99.6 2.7E-14 9.2E-19 147.7 14.3 117 195-332 22-144 (192)
99 2elf_A Protein translation elo 99.6 8.8E-15 3E-19 166.6 11.7 150 4-174 23-180 (370)
100 2b6h_A ADP-ribosylation factor 99.6 5.2E-14 1.8E-18 145.6 16.5 111 199-333 29-144 (192)
101 3tw8_B RAS-related protein RAB 99.5 1.2E-14 4.1E-19 148.0 11.3 116 196-332 6-126 (181)
102 2h17_A ADP-ribosylation factor 99.5 2.5E-14 8.5E-19 146.3 13.6 113 197-333 19-136 (181)
103 1x3s_A RAS-related protein RAB 99.5 6.4E-15 2.2E-19 152.1 9.0 155 3-174 16-178 (195)
104 2wji_A Ferrous iron transport 99.5 2.2E-14 7.5E-19 144.5 12.6 110 200-332 4-121 (165)
105 2p5s_A RAS and EF-hand domain 99.5 2.7E-14 9.2E-19 148.5 13.5 120 194-332 23-146 (199)
106 3qq5_A Small GTP-binding prote 99.5 9.2E-15 3.2E-19 168.4 10.6 154 2-174 34-196 (423)
107 1z0f_A RAB14, member RAS oncog 99.5 5.2E-14 1.8E-18 142.9 15.1 118 196-332 12-133 (179)
108 2gj8_A MNME, tRNA modification 99.5 2.3E-14 7.7E-19 145.5 12.2 113 200-332 5-128 (172)
109 1r2q_A RAS-related protein RAB 99.5 3.4E-14 1.2E-18 142.9 13.4 116 198-332 5-124 (170)
110 3avx_A Elongation factor TS, e 99.5 7.7E-15 2.6E-19 182.4 10.2 164 3-173 297-485 (1289)
111 2gf9_A RAS-related protein RAB 99.5 1.8E-14 6.1E-19 148.4 11.4 118 196-332 19-140 (189)
112 1z0j_A RAB-22, RAS-related pro 99.5 3.1E-14 1.1E-18 143.2 12.9 116 198-332 5-124 (170)
113 3iby_A Ferrous iron transport 99.5 2.3E-15 7.8E-20 163.0 4.7 150 3-171 2-164 (256)
114 1zbd_A Rabphilin-3A; G protein 99.5 4.3E-14 1.5E-18 147.3 14.2 118 197-333 6-127 (203)
115 1svi_A GTP-binding protein YSX 99.5 2.2E-14 7.6E-19 148.2 11.7 155 2-172 23-193 (195)
116 2hjg_A GTP-binding protein ENG 99.5 7.6E-15 2.6E-19 171.7 9.2 158 3-173 176-348 (436)
117 2wji_A Ferrous iron transport 99.5 7.5E-15 2.6E-19 147.9 7.8 151 3-172 4-163 (165)
118 2fu5_C RAS-related protein RAB 99.5 2.4E-14 8.3E-19 146.3 11.7 116 197-333 6-127 (183)
119 2fu5_C RAS-related protein RAB 99.5 8.9E-15 3.1E-19 149.6 8.5 154 3-173 9-170 (183)
120 2bme_A RAB4A, RAS-related prot 99.5 5.9E-14 2E-18 143.8 14.6 115 197-332 8-128 (186)
121 1wms_A RAB-9, RAB9, RAS-relate 99.5 1E-13 3.5E-18 140.7 16.2 116 196-332 4-129 (177)
122 3b1v_A Ferrous iron uptake tra 99.5 1.4E-14 4.7E-19 158.1 10.3 110 199-332 3-120 (272)
123 1m2o_B GTP-binding protein SAR 99.5 2.5E-14 8.5E-19 147.7 11.7 110 200-333 24-138 (190)
124 2g6b_A RAS-related protein RAB 99.5 3.9E-14 1.3E-18 144.2 13.0 117 197-333 8-130 (180)
125 1ek0_A Protein (GTP-binding pr 99.5 4.6E-14 1.6E-18 141.9 13.4 115 200-333 4-122 (170)
126 4dcu_A GTP-binding protein ENG 99.5 1.2E-14 4.1E-19 171.0 10.5 158 3-173 196-368 (456)
127 1r8s_A ADP-ribosylation factor 99.5 2.8E-14 9.6E-19 142.9 11.7 155 3-172 1-160 (164)
128 2hxs_A RAB-26, RAS-related pro 99.5 1.1E-14 3.7E-19 148.1 8.7 155 2-173 6-172 (178)
129 3t1o_A Gliding protein MGLA; G 99.5 4.4E-15 1.5E-19 153.5 5.9 155 2-173 14-191 (198)
130 2y8e_A RAB-protein 6, GH09086P 99.5 8E-14 2.7E-18 141.5 15.2 113 199-332 14-132 (179)
131 3bc1_A RAS-related protein RAB 99.5 8.3E-14 2.9E-18 143.4 15.2 115 197-332 9-140 (195)
132 1f6b_A SAR1; gtpases, N-termin 99.5 5.3E-14 1.8E-18 146.3 13.7 110 200-333 26-140 (198)
133 1ksh_A ARF-like protein 2; sma 99.5 3.3E-14 1.1E-18 145.9 12.0 112 198-333 17-133 (186)
134 3clv_A RAB5 protein, putative; 99.5 9.9E-14 3.4E-18 144.0 15.5 64 267-330 93-158 (208)
135 1g16_A RAS-related protein SEC 99.5 4.6E-14 1.6E-18 142.0 12.5 113 199-332 3-121 (170)
136 3gee_A MNME, tRNA modification 99.5 2.1E-14 7.3E-19 168.3 11.5 113 200-334 234-358 (476)
137 3dz8_A RAS-related protein RAB 99.5 3.4E-14 1.1E-18 146.7 11.6 118 196-332 20-141 (191)
138 1zd9_A ADP-ribosylation factor 99.5 2.3E-14 7.8E-19 147.6 10.1 157 3-173 23-184 (188)
139 4bas_A ADP-ribosylation factor 99.5 2E-14 7E-19 149.0 9.8 158 2-173 17-188 (199)
140 2il1_A RAB12; G-protein, GDP, 99.5 1.9E-14 6.4E-19 148.8 9.4 154 3-172 27-188 (192)
141 4dsu_A GTPase KRAS, isoform 2B 99.5 1.2E-13 4E-18 141.8 15.3 112 199-332 4-122 (189)
142 2x77_A ADP-ribosylation factor 99.5 1.9E-14 6.6E-19 148.1 9.4 112 199-334 22-138 (189)
143 1moz_A ARL1, ADP-ribosylation 99.5 3.1E-14 1.1E-18 145.4 10.8 112 198-333 17-133 (183)
144 1zj6_A ADP-ribosylation factor 99.5 2.5E-14 8.7E-19 147.0 10.2 158 2-174 16-178 (187)
145 1zo1_I IF2, translation initia 99.5 1.5E-15 5E-20 178.0 0.9 158 3-170 5-163 (501)
146 2fn4_A P23, RAS-related protei 99.5 1.1E-13 3.8E-18 140.7 14.8 115 196-332 6-127 (181)
147 2efe_B Small GTP-binding prote 99.5 3.4E-14 1.2E-18 144.8 10.5 155 3-174 13-175 (181)
148 2nzj_A GTP-binding protein REM 99.5 1.1E-13 3.6E-18 140.1 14.0 115 199-333 4-125 (175)
149 2gj8_A MNME, tRNA modification 99.5 1.8E-14 6.2E-19 146.2 8.3 150 2-173 4-165 (172)
150 2oil_A CATX-8, RAS-related pro 99.5 6.8E-14 2.3E-18 144.5 12.8 119 195-332 21-143 (193)
151 3tkl_A RAS-related protein RAB 99.5 1.8E-14 6.2E-19 149.0 8.3 154 3-173 17-178 (196)
152 2ew1_A RAS-related protein RAB 99.5 8E-14 2.7E-18 145.3 13.3 117 195-332 22-144 (201)
153 2h57_A ADP-ribosylation factor 99.5 2.8E-14 9.7E-19 147.0 9.8 158 2-173 21-186 (190)
154 1ky3_A GTP-binding protein YPT 99.5 4.4E-14 1.5E-18 143.9 11.0 115 197-332 6-131 (182)
155 2hup_A RAS-related protein RAB 99.5 3E-14 1E-18 148.5 10.0 154 3-173 30-192 (201)
156 3cph_A RAS-related protein SEC 99.5 5.4E-14 1.9E-18 147.5 12.0 115 197-332 18-138 (213)
157 3i8s_A Ferrous iron transport 99.5 4.7E-15 1.6E-19 162.4 3.9 153 2-173 3-168 (274)
158 2a5j_A RAS-related protein RAB 99.5 9.2E-14 3.1E-18 143.4 13.5 116 196-332 18-139 (191)
159 1upt_A ARL1, ADP-ribosylation 99.5 2.4E-14 8.4E-19 144.3 8.9 157 2-173 7-168 (171)
160 3kkq_A RAS-related protein M-R 99.5 1.9E-13 6.7E-18 139.6 15.7 114 198-333 17-137 (183)
161 2bov_A RAla, RAS-related prote 99.5 2.4E-13 8.4E-18 141.6 16.7 114 197-332 12-132 (206)
162 1kao_A RAP2A; GTP-binding prot 99.5 6.4E-14 2.2E-18 140.3 11.7 111 200-332 4-121 (167)
163 2qu8_A Putative nucleolar GTP- 99.5 3E-13 1E-17 143.9 17.5 115 198-333 28-156 (228)
164 2h17_A ADP-ribosylation factor 99.5 2E-14 6.8E-19 147.0 8.0 154 2-170 21-179 (181)
165 3q72_A GTP-binding protein RAD 99.5 6.7E-14 2.3E-18 140.4 11.8 114 199-333 2-120 (166)
166 3pqc_A Probable GTP-binding pr 99.5 5E-14 1.7E-18 145.3 11.1 156 2-173 23-193 (195)
167 1z2a_A RAS-related protein RAB 99.5 8E-14 2.7E-18 140.0 12.3 114 198-332 4-122 (168)
168 1c1y_A RAS-related protein RAP 99.5 9.2E-14 3.2E-18 139.3 12.7 113 200-332 4-121 (167)
169 2erx_A GTP-binding protein DI- 99.5 2.2E-13 7.4E-18 137.2 15.4 114 199-332 3-122 (172)
170 2bcg_Y Protein YP2, GTP-bindin 99.5 8.8E-14 3E-18 145.3 13.0 116 197-333 6-127 (206)
171 2atx_A Small GTP binding prote 99.5 7.7E-14 2.6E-18 144.2 12.3 117 195-333 14-136 (194)
172 2wjg_A FEOB, ferrous iron tran 99.5 5.7E-14 2E-18 144.2 11.2 111 199-332 7-125 (188)
173 2b6h_A ADP-ribosylation factor 99.5 5.8E-14 2E-18 145.2 11.2 156 2-172 29-189 (192)
174 1x3s_A RAS-related protein RAB 99.5 7.4E-14 2.5E-18 144.1 11.9 116 198-332 14-134 (195)
175 2fh5_B SR-beta, signal recogni 99.5 7.7E-14 2.6E-18 146.7 12.2 126 198-348 6-145 (214)
176 1u8z_A RAS-related protein RAL 99.5 1.7E-13 5.9E-18 137.3 14.2 112 199-332 4-122 (168)
177 1xzp_A Probable tRNA modificat 99.5 9.5E-14 3.2E-18 162.9 14.1 112 200-333 244-364 (482)
178 2ce2_X GTPase HRAS; signaling 99.5 2.5E-13 8.4E-18 135.7 15.3 112 200-333 4-122 (166)
179 2f7s_A C25KG, RAS-related prot 99.5 7.6E-14 2.6E-18 147.1 12.1 116 196-332 22-154 (217)
180 1z06_A RAS-related protein RAB 99.5 1.1E-13 3.6E-18 142.6 12.8 115 197-332 18-140 (189)
181 1vg8_A RAS-related protein RAB 99.5 4.8E-14 1.7E-18 147.2 10.4 115 197-332 6-130 (207)
182 3t5g_A GTP-binding protein RHE 99.5 3.5E-14 1.2E-18 144.9 9.1 115 196-332 3-124 (181)
183 2a9k_A RAS-related protein RAL 99.5 2.7E-13 9.3E-18 138.6 15.5 113 198-332 17-136 (187)
184 3q85_A GTP-binding protein REM 99.5 2.7E-13 9.1E-18 136.5 15.1 113 199-332 2-122 (169)
185 3gj0_A GTP-binding nuclear pro 99.5 1.5E-14 5.1E-19 153.1 6.0 118 197-333 13-133 (221)
186 2bme_A RAB4A, RAS-related prot 99.5 2.9E-14 1E-18 146.1 8.0 153 3-173 11-172 (186)
187 1fzq_A ADP-ribosylation factor 99.5 8.4E-14 2.9E-18 142.5 11.4 156 2-172 16-176 (181)
188 1ek0_A Protein (GTP-binding pr 99.5 5.3E-14 1.8E-18 141.5 9.7 154 2-172 3-167 (170)
189 3llu_A RAS-related GTP-binding 99.5 3.2E-13 1.1E-17 140.0 15.8 118 194-333 15-143 (196)
190 1z08_A RAS-related protein RAB 99.5 9.8E-14 3.4E-18 139.7 11.6 114 198-332 5-124 (170)
191 3o47_A ADP-ribosylation factor 99.5 1.1E-13 3.8E-18 155.5 12.8 113 198-334 164-281 (329)
192 1f6b_A SAR1; gtpases, N-termin 99.5 8.3E-14 2.8E-18 144.8 10.9 162 2-171 25-196 (198)
193 2y8e_A RAB-protein 6, GH09086P 99.5 3.8E-14 1.3E-18 144.0 8.1 154 3-173 15-176 (179)
194 3tw8_B RAS-related protein RAB 99.5 1.8E-14 6.1E-19 146.7 5.6 154 3-173 10-170 (181)
195 1m2o_B GTP-binding protein SAR 99.5 7.3E-14 2.5E-18 144.2 10.3 161 2-171 23-189 (190)
196 2gf0_A GTP-binding protein DI- 99.5 3.6E-13 1.2E-17 139.5 15.5 116 198-333 7-128 (199)
197 1g16_A RAS-related protein SEC 99.5 2.6E-14 8.7E-19 143.9 6.5 155 2-173 3-164 (170)
198 2ew1_A RAS-related protein RAB 99.5 4.1E-14 1.4E-18 147.6 8.2 154 3-173 27-188 (201)
199 1ega_A Protein (GTP-binding pr 99.5 4.5E-14 1.5E-18 156.6 9.0 157 4-175 10-176 (301)
200 3a1s_A Iron(II) transport prot 99.5 1.9E-14 6.5E-19 156.0 5.7 151 3-172 6-165 (258)
201 1mh1_A RAC1; GTP-binding, GTPa 99.5 1.1E-13 3.7E-18 141.6 11.0 113 199-333 5-123 (186)
202 1wms_A RAB-9, RAB9, RAS-relate 99.5 8.3E-14 2.8E-18 141.3 10.1 155 2-172 7-172 (177)
203 3cph_A RAS-related protein SEC 99.5 4.2E-14 1.5E-18 148.3 8.0 156 2-174 20-182 (213)
204 1ksh_A ARF-like protein 2; sma 99.5 6.3E-14 2.2E-18 143.7 9.0 157 2-173 18-179 (186)
205 2o52_A RAS-related protein RAB 99.5 1.2E-13 4.2E-18 143.7 11.3 116 196-332 22-143 (200)
206 2p5s_A RAS and EF-hand domain 99.5 7.5E-14 2.6E-18 145.1 9.6 154 2-172 28-195 (199)
207 4gzl_A RAS-related C3 botulinu 99.5 1.1E-13 3.8E-18 144.6 11.0 113 199-333 30-148 (204)
208 2qu8_A Putative nucleolar GTP- 99.5 1.7E-13 5.7E-18 145.9 12.4 160 2-173 29-204 (228)
209 3con_A GTPase NRAS; structural 99.5 3.4E-13 1.2E-17 138.7 14.3 113 199-333 21-140 (190)
210 3t5g_A GTP-binding protein RHE 99.5 2.1E-14 7.1E-19 146.6 5.0 153 3-173 7-168 (181)
211 1zbd_A Rabphilin-3A; G protein 99.5 1.1E-13 3.9E-18 144.0 10.6 154 3-173 9-170 (203)
212 1z06_A RAS-related protein RAB 99.5 6E-14 2E-18 144.5 8.4 153 2-171 20-185 (189)
213 1moz_A ARL1, ADP-ribosylation 99.5 7E-14 2.4E-18 142.8 8.8 157 2-173 18-179 (183)
214 2yc2_C IFT27, small RAB-relate 99.5 8.2E-14 2.8E-18 145.4 9.4 154 3-173 21-191 (208)
215 3bc1_A RAS-related protein RAB 99.5 6.2E-14 2.1E-18 144.4 8.4 154 3-173 12-184 (195)
216 2fh5_B SR-beta, signal recogni 99.5 2.1E-13 7E-18 143.4 12.5 163 2-171 7-213 (214)
217 2a5j_A RAS-related protein RAB 99.5 4.1E-14 1.4E-18 146.0 7.0 155 2-173 21-183 (191)
218 3cpj_B GTP-binding protein YPT 99.5 1.5E-13 5.1E-18 145.7 11.5 116 196-332 10-131 (223)
219 1z2a_A RAS-related protein RAB 99.5 4.8E-14 1.6E-18 141.6 7.2 154 2-172 5-165 (168)
220 1ky3_A GTP-binding protein YPT 99.5 1.8E-14 6.1E-19 146.8 3.9 155 2-172 8-176 (182)
221 3kkq_A RAS-related protein M-R 99.5 1E-13 3.5E-18 141.7 9.5 153 2-172 18-180 (183)
222 2g6b_A RAS-related protein RAB 99.5 7.1E-14 2.4E-18 142.2 8.2 154 3-173 11-173 (180)
223 2x77_A ADP-ribosylation factor 99.5 4.9E-14 1.7E-18 145.1 7.0 157 2-173 22-183 (189)
224 3bwd_D RAC-like GTP-binding pr 99.5 4.1E-14 1.4E-18 144.4 6.3 116 198-333 7-126 (182)
225 3l0i_B RAS-related protein RAB 99.5 9.6E-15 3.3E-19 151.9 1.7 153 3-172 34-194 (199)
226 1r2q_A RAS-related protein RAB 99.5 1E-13 3.5E-18 139.4 9.0 154 2-173 6-168 (170)
227 3lxx_A GTPase IMAP family memb 99.5 1.8E-14 6.3E-19 154.5 3.7 142 194-355 24-189 (239)
228 1z0f_A RAB14, member RAS oncog 99.5 1.4E-13 4.8E-18 139.7 10.0 153 3-172 16-176 (179)
229 2f7s_A C25KG, RAS-related prot 99.5 4.3E-14 1.5E-18 149.0 6.4 155 3-174 26-199 (217)
230 3gee_A MNME, tRNA modification 99.4 6.1E-14 2.1E-18 164.4 8.3 151 3-173 234-397 (476)
231 3clv_A RAB5 protein, putative; 99.4 6E-14 2E-18 145.7 7.2 155 2-172 7-202 (208)
232 3b1v_A Ferrous iron uptake tra 99.4 2.1E-14 7.3E-19 156.5 3.9 151 2-172 3-162 (272)
233 2bcg_Y Protein YP2, GTP-bindin 99.4 6.5E-14 2.2E-18 146.3 7.4 155 3-174 9-171 (206)
234 1u0l_A Probable GTPase ENGC; p 99.4 5.5E-14 1.9E-18 155.9 7.3 158 18-222 32-192 (301)
235 2p67_A LAO/AO transport system 99.4 2.5E-15 8.6E-20 169.8 -3.6 175 264-468 146-329 (341)
236 3oes_A GTPase rhebl1; small GT 99.4 1.4E-13 4.7E-18 143.3 9.8 119 194-332 19-142 (201)
237 1z08_A RAS-related protein RAB 99.4 4.7E-14 1.6E-18 142.1 6.0 154 2-172 6-167 (170)
238 3llu_A RAS-related GTP-binding 99.4 1.3E-13 4.4E-18 143.0 9.4 163 2-171 20-194 (196)
239 2wjg_A FEOB, ferrous iron tran 99.4 5.3E-14 1.8E-18 144.5 6.4 153 3-174 8-169 (188)
240 2fg5_A RAB-22B, RAS-related pr 99.4 1.3E-13 4.5E-18 142.4 9.3 154 3-173 24-185 (192)
241 1z0j_A RAB-22, RAS-related pro 99.4 1.3E-13 4.3E-18 138.8 8.8 154 3-173 7-168 (170)
242 3q85_A GTP-binding protein REM 99.4 1.8E-13 6.1E-18 137.7 9.9 154 2-172 2-165 (169)
243 3gj0_A GTP-binding nuclear pro 99.4 1.6E-14 5.5E-19 152.9 2.2 156 2-174 15-175 (221)
244 4djt_A GTP-binding nuclear pro 99.4 1.2E-13 4E-18 145.7 8.9 116 197-332 9-130 (218)
245 3l0i_B RAS-related protein RAB 99.4 1.5E-14 5.3E-19 150.3 2.0 116 197-333 31-152 (199)
246 3cnl_A YLQF, putative uncharac 99.4 3.5E-14 1.2E-18 153.8 4.9 153 57-280 4-157 (262)
247 2j0v_A RAC-like GTP-binding pr 99.4 2E-13 6.7E-18 143.3 10.1 115 197-333 7-127 (212)
248 3reg_A RHO-like small GTPase; 99.4 2.6E-13 8.8E-18 140.3 10.9 116 196-333 20-141 (194)
249 1xzp_A Probable tRNA modificat 99.4 1.9E-13 6.5E-18 160.3 11.1 150 3-172 244-403 (482)
250 2o52_A RAS-related protein RAB 99.4 7E-14 2.4E-18 145.5 6.5 153 3-173 26-187 (200)
251 2fv8_A H6, RHO-related GTP-bin 99.4 4.6E-13 1.6E-17 140.1 12.7 113 199-333 25-143 (207)
252 1kao_A RAP2A; GTP-binding prot 99.4 1.3E-13 4.4E-18 138.1 8.0 153 2-172 3-164 (167)
253 3k53_A Ferrous iron transport 99.4 3.6E-14 1.2E-18 155.2 4.3 153 2-173 3-165 (271)
254 2yc2_C IFT27, small RAB-relate 99.4 1.8E-13 6E-18 142.8 9.2 118 197-333 18-146 (208)
255 2cxx_A Probable GTP-binding pr 99.4 2.1E-13 7.1E-18 140.1 9.6 157 2-173 1-183 (190)
256 4djt_A GTP-binding nuclear pro 99.4 1.6E-13 5.4E-18 144.8 8.9 158 2-174 11-175 (218)
257 3lxw_A GTPase IMAP family memb 99.4 7.2E-13 2.5E-17 142.7 14.0 123 198-340 20-160 (247)
258 3cbq_A GTP-binding protein REM 99.4 4.4E-13 1.5E-17 139.0 11.8 155 2-173 23-187 (195)
259 3o47_A ADP-ribosylation factor 99.4 1.7E-13 5.7E-18 154.1 9.2 157 2-173 165-326 (329)
260 3dz8_A RAS-related protein RAB 99.4 4.2E-14 1.4E-18 145.9 4.0 155 2-173 23-185 (191)
261 2gco_A H9, RHO-related GTP-bin 99.4 3.5E-13 1.2E-17 140.3 11.0 114 198-333 24-143 (201)
262 2gf9_A RAS-related protein RAB 99.4 8.3E-14 2.8E-18 143.4 6.0 154 3-173 23-184 (189)
263 3geh_A MNME, tRNA modification 99.4 5.9E-14 2E-18 163.9 5.4 112 200-333 225-344 (462)
264 3lvq_E ARF-GAP with SH3 domain 99.4 5.1E-13 1.7E-17 159.3 13.6 112 198-333 321-437 (497)
265 4dsu_A GTPase KRAS, isoform 2B 99.4 2.5E-13 8.6E-18 139.2 9.5 155 2-174 4-166 (189)
266 3ihw_A Centg3; RAS, centaurin, 99.4 1.1E-12 3.7E-17 134.7 14.2 109 196-332 17-132 (184)
267 2cxx_A Probable GTP-binding pr 99.4 3.7E-13 1.3E-17 138.2 10.7 122 200-347 2-149 (190)
268 2q3h_A RAS homolog gene family 99.4 2.5E-13 8.7E-18 141.1 9.5 116 196-333 17-138 (201)
269 3t5d_A Septin-7; GTP-binding p 99.4 3.1E-13 1.1E-17 148.0 10.7 135 199-347 8-173 (274)
270 2atv_A RERG, RAS-like estrogen 99.4 1.1E-12 3.8E-17 135.8 14.3 114 198-332 27-145 (196)
271 1vg8_A RAS-related protein RAB 99.4 7.6E-14 2.6E-18 145.7 5.5 157 2-174 8-175 (207)
272 1c1y_A RAS-related protein RAP 99.4 2.1E-13 7.3E-18 136.6 8.6 154 2-172 3-165 (167)
273 3sjy_A Translation initiation 99.4 1.6E-13 5.5E-18 158.8 8.7 161 2-173 8-191 (403)
274 2j1l_A RHO-related GTP-binding 99.4 1.3E-12 4.4E-17 137.5 14.7 113 199-333 34-152 (214)
275 3cpj_B GTP-binding protein YPT 99.4 7.3E-14 2.5E-18 148.1 5.1 155 3-174 14-176 (223)
276 2atx_A Small GTP binding prote 99.4 1.5E-13 5E-18 142.1 6.9 163 3-171 19-190 (194)
277 2fn4_A P23, RAS-related protei 99.4 2.2E-13 7.4E-18 138.6 8.0 154 2-173 9-171 (181)
278 1lnz_A SPO0B-associated GTP-bi 99.4 3E-13 1E-17 151.9 9.8 115 198-333 157-288 (342)
279 3cbq_A GTP-binding protein REM 99.4 2.3E-12 7.7E-17 133.6 15.8 116 197-333 21-144 (195)
280 2gco_A H9, RHO-related GTP-bin 99.4 1.8E-13 6.1E-18 142.5 7.3 164 2-171 25-197 (201)
281 1g7s_A Translation initiation 99.4 5.7E-14 1.9E-18 168.7 3.8 170 3-174 6-218 (594)
282 1u8z_A RAS-related protein RAL 99.4 4.3E-13 1.5E-17 134.3 9.5 152 2-172 4-165 (168)
283 2nzj_A GTP-binding protein REM 99.4 2.4E-13 8.3E-18 137.5 7.8 152 2-172 4-167 (175)
284 2xtp_A GTPase IMAP family memb 99.4 3E-13 1E-17 146.9 8.9 158 3-174 23-208 (260)
285 3q72_A GTP-binding protein RAD 99.4 3.7E-13 1.3E-17 134.9 8.7 151 2-172 2-162 (166)
286 2iwr_A Centaurin gamma 1; ANK 99.4 2.7E-12 9.4E-17 130.3 15.1 107 198-332 6-121 (178)
287 2a9k_A RAS-related protein RAL 99.4 5.7E-13 2E-17 136.2 9.7 155 2-172 18-179 (187)
288 3reg_A RHO-like small GTPase; 99.4 1.9E-13 6.5E-18 141.3 6.1 153 3-172 24-186 (194)
289 3ihw_A Centg3; RAS, centaurin, 99.4 4.1E-13 1.4E-17 137.8 8.4 148 2-172 20-178 (184)
290 4gzl_A RAS-related C3 botulinu 99.4 1.6E-13 5.5E-18 143.3 5.4 164 2-171 30-202 (204)
291 3r7w_A Gtpase1, GTP-binding pr 99.4 2.2E-12 7.5E-17 143.6 14.8 114 200-333 4-129 (307)
292 2bov_A RAla, RAS-related prote 99.4 9.4E-13 3.2E-17 137.1 11.1 152 3-173 15-176 (206)
293 2oil_A CATX-8, RAS-related pro 99.4 3.7E-13 1.3E-17 138.9 7.9 153 3-172 26-186 (193)
294 4dkx_A RAS-related protein RAB 99.4 2.5E-12 8.5E-17 135.3 14.0 114 200-332 14-131 (216)
295 2erx_A GTP-binding protein DI- 99.4 6.9E-13 2.4E-17 133.5 9.3 154 2-173 3-166 (172)
296 2ce2_X GTPase HRAS; signaling 99.4 5.9E-13 2E-17 132.9 8.7 152 3-172 4-163 (166)
297 3con_A GTPase NRAS; structural 99.4 6.6E-13 2.2E-17 136.6 9.2 153 3-173 22-182 (190)
298 2fv8_A H6, RHO-related GTP-bin 99.4 3E-13 1E-17 141.5 6.5 164 3-172 26-198 (207)
299 2iwr_A Centaurin gamma 1; ANK 99.4 1.3E-12 4.3E-17 132.9 10.9 149 2-173 7-168 (178)
300 2j0v_A RAC-like GTP-binding pr 99.4 2.2E-13 7.6E-18 142.9 5.1 154 3-173 10-179 (212)
301 3q3j_B RHO-related GTP-binding 99.4 2.3E-13 8E-18 143.3 5.0 155 2-173 27-202 (214)
302 2j1l_A RHO-related GTP-binding 99.4 7.3E-13 2.5E-17 139.4 8.6 164 3-172 35-207 (214)
303 3c5c_A RAS-like protein 12; GD 99.4 1.8E-12 6.1E-17 133.3 11.3 115 197-332 19-140 (187)
304 2q3h_A RAS homolog gene family 99.4 5.1E-13 1.8E-17 138.8 7.3 154 2-172 20-193 (201)
305 1mh1_A RAC1; GTP-binding, GTPa 99.4 4E-13 1.4E-17 137.3 6.3 166 2-173 5-179 (186)
306 3bwd_D RAC-like GTP-binding pr 99.4 1.2E-13 4.1E-18 140.8 2.3 154 2-172 8-179 (182)
307 3q3j_B RHO-related GTP-binding 99.4 7.4E-13 2.5E-17 139.4 8.3 117 197-333 25-145 (214)
308 2atv_A RERG, RAS-like estrogen 99.4 8.1E-13 2.8E-17 136.8 8.3 152 2-172 28-189 (196)
309 2gf0_A GTP-binding protein DI- 99.4 1.4E-12 4.9E-17 134.9 10.1 155 2-174 8-171 (199)
310 1m7b_A RND3/RHOE small GTP-bin 99.3 8.2E-13 2.8E-17 135.3 7.7 116 198-333 6-125 (184)
311 1lnz_A SPO0B-associated GTP-bi 99.3 9.4E-13 3.2E-17 147.8 8.6 154 4-174 160-330 (342)
312 1jwy_B Dynamin A GTPase domain 99.3 1.5E-12 5E-17 145.7 10.0 69 265-333 129-212 (315)
313 3r7w_A Gtpase1, GTP-binding pr 99.3 1.3E-12 4.3E-17 145.5 9.5 163 2-172 3-179 (307)
314 2qtf_A Protein HFLX, GTP-bindi 99.3 8.2E-12 2.8E-16 141.6 15.0 115 198-333 178-306 (364)
315 3lvq_E ARF-GAP with SH3 domain 99.3 8.7E-13 3E-17 157.3 7.2 157 3-174 323-484 (497)
316 3oes_A GTPase rhebl1; small GT 99.3 4.2E-13 1.4E-17 139.7 3.7 155 2-174 24-187 (201)
317 3geh_A MNME, tRNA modification 99.3 4.8E-13 1.6E-17 156.2 4.3 150 3-173 225-383 (462)
318 3th5_A RAS-related C3 botulinu 99.0 1.5E-13 5.2E-18 143.3 0.0 163 2-170 30-201 (204)
319 3th5_A RAS-related C3 botulinu 99.0 1.7E-13 5.7E-18 143.0 0.0 114 198-333 29-148 (204)
320 2e87_A Hypothetical protein PH 99.3 9.7E-12 3.3E-16 141.5 14.1 114 198-332 166-293 (357)
321 1n0u_A EF-2, elongation factor 99.3 1.7E-12 5.7E-17 162.8 8.4 112 3-115 20-163 (842)
322 1gwn_A RHO-related GTP-binding 99.3 1.9E-12 6.4E-17 135.4 7.4 115 197-333 26-146 (205)
323 3c5c_A RAS-like protein 12; GD 99.3 2.4E-12 8.1E-17 132.4 7.5 152 2-172 21-184 (187)
324 1m7b_A RND3/RHOE small GTP-bin 99.3 9.6E-13 3.3E-17 134.8 4.5 164 2-171 7-180 (184)
325 2aka_B Dynamin-1; fusion prote 99.3 4.5E-12 1.5E-16 140.5 10.1 133 198-333 25-206 (299)
326 1gwn_A RHO-related GTP-binding 99.3 1E-12 3.6E-17 137.3 4.2 164 2-171 28-201 (205)
327 2wkq_A NPH1-1, RAS-related C3 99.3 6.5E-12 2.2E-16 141.3 10.3 113 199-333 155-273 (332)
328 3def_A T7I23.11 protein; chlor 99.3 1.3E-11 4.4E-16 134.2 12.0 114 199-332 36-164 (262)
329 3lxw_A GTPase IMAP family memb 99.3 4.2E-12 1.4E-16 136.7 7.4 159 3-174 22-208 (247)
330 2yv5_A YJEQ protein; hydrolase 99.3 5.5E-12 1.9E-16 139.7 8.0 117 62-220 68-186 (302)
331 2g3y_A GTP-binding protein GEM 99.2 1E-11 3.5E-16 130.2 9.4 154 2-172 37-201 (211)
332 2g3y_A GTP-binding protein GEM 99.2 3.1E-11 1.1E-15 126.5 13.1 115 198-332 36-158 (211)
333 3t5d_A Septin-7; GTP-binding p 99.2 1.1E-11 3.8E-16 135.6 9.6 156 3-173 9-203 (274)
334 3r7w_B Gtpase2, GTP-binding pr 99.2 1.3E-11 4.5E-16 135.9 10.1 162 4-173 1-173 (331)
335 2zej_A Dardarin, leucine-rich 99.2 4.2E-12 1.4E-16 130.1 5.6 163 2-174 2-178 (184)
336 1h65_A Chloroplast outer envel 99.2 7.4E-11 2.5E-15 128.8 14.6 115 199-333 39-168 (270)
337 2qtf_A Protein HFLX, GTP-bindi 99.2 3.4E-11 1.2E-15 136.6 12.2 160 3-173 179-353 (364)
338 1pui_A ENGB, probable GTP-bind 99.2 8.1E-11 2.8E-15 123.0 13.7 113 198-332 25-150 (210)
339 2aka_B Dynamin-1; fusion prote 99.2 1.6E-11 5.4E-16 136.1 8.5 112 49-171 124-250 (299)
340 2wkq_A NPH1-1, RAS-related C3 99.2 1.1E-11 3.8E-16 139.3 6.6 165 2-172 155-328 (332)
341 2zej_A Dardarin, leucine-rich 99.2 1.3E-11 4.3E-16 126.5 6.2 117 200-333 3-126 (184)
342 3dpu_A RAB family protein; roc 99.2 1.4E-11 4.7E-16 148.0 7.4 115 198-333 40-164 (535)
343 2cjw_A GTP-binding protein GEM 99.2 1.2E-10 4.1E-15 120.2 13.3 114 199-332 6-127 (192)
344 1nrj_B SR-beta, signal recogni 99.2 5E-11 1.7E-15 125.4 10.3 114 197-335 10-136 (218)
345 2e87_A Hypothetical protein PH 99.2 5.9E-11 2E-15 135.0 10.8 155 3-174 168-336 (357)
346 2cjw_A GTP-binding protein GEM 99.2 4.5E-11 1.6E-15 123.4 8.8 153 2-172 6-170 (192)
347 2f9l_A RAB11B, member RAS onco 99.2 2E-10 6.8E-15 119.1 13.5 114 198-332 4-123 (199)
348 3p32_A Probable GTPase RV1496/ 99.2 2E-11 7E-16 138.6 6.4 128 198-332 78-230 (355)
349 2ged_A SR-beta, signal recogni 99.1 4.2E-11 1.4E-15 123.3 7.8 126 198-348 47-186 (193)
350 2qpt_A EH domain-containing pr 99.1 1.6E-10 5.5E-15 138.1 13.3 137 197-333 63-232 (550)
351 1wxq_A GTP-binding protein; st 99.1 1.6E-11 5.5E-16 140.8 4.0 82 201-303 2-114 (397)
352 1nrj_B SR-beta, signal recogni 99.1 2.7E-11 9.2E-16 127.5 5.4 142 2-160 12-170 (218)
353 1udx_A The GTP-binding protein 99.1 1.7E-10 5.7E-15 132.5 12.3 115 198-333 156-283 (416)
354 3lxx_A GTPase IMAP family memb 99.1 6.6E-11 2.2E-15 126.7 8.0 112 3-116 30-159 (239)
355 3dpu_A RAB family protein; roc 99.1 2.4E-11 8.1E-16 145.9 4.5 156 2-174 41-208 (535)
356 1wxq_A GTP-binding protein; st 99.1 1.4E-11 4.8E-16 141.2 1.9 162 3-181 1-278 (397)
357 1oix_A RAS-related protein RAB 99.1 7E-10 2.4E-14 114.3 14.2 116 196-332 26-147 (191)
358 2j69_A Bacterial dynamin-like 99.1 2.7E-10 9.1E-15 140.1 12.8 66 267-332 174-243 (695)
359 2wsm_A Hydrogenase expression/ 99.1 6.2E-11 2.1E-15 125.0 6.1 125 198-332 29-167 (221)
360 1jwy_B Dynamin A GTPase domain 99.1 9.8E-11 3.3E-15 130.8 7.2 116 48-174 129-262 (315)
361 2f9l_A RAB11B, member RAS onco 99.1 1.3E-10 4.4E-15 120.6 7.5 154 3-173 6-167 (199)
362 3c5h_A Glucocorticoid receptor 99.1 1.1E-11 3.6E-16 134.3 -1.1 155 2-172 19-253 (255)
363 2x2e_A Dynamin-1; nitration, h 99.1 1.6E-10 5.4E-15 131.2 8.3 135 199-333 31-211 (353)
364 3zvr_A Dynamin-1; hydrolase, D 99.1 2.3E-10 8E-15 139.2 9.8 169 152-333 17-231 (772)
365 2qag_A Septin-2, protein NEDD5 99.0 2.6E-10 8.9E-15 129.5 9.5 121 200-333 38-188 (361)
366 1t9h_A YLOQ, probable GTPase E 99.0 2.1E-10 7.3E-15 126.1 8.1 111 69-222 82-196 (307)
367 1pui_A ENGB, probable GTP-bind 99.0 9.7E-10 3.3E-14 114.7 12.6 156 3-173 27-198 (210)
368 4a9a_A Ribosome-interacting GT 99.0 6.2E-10 2.1E-14 125.7 10.8 116 195-332 68-195 (376)
369 3r7w_B Gtpase2, GTP-binding pr 99.0 1.9E-09 6.6E-14 118.7 13.7 112 201-334 1-121 (331)
370 2j69_A Bacterial dynamin-like 99.0 6.6E-10 2.3E-14 136.6 9.9 124 50-173 174-324 (695)
371 1oix_A RAS-related protein RAB 99.0 5.4E-10 1.8E-14 115.1 6.6 152 3-171 30-189 (191)
372 2ged_A SR-beta, signal recogni 98.9 5.8E-10 2E-14 114.7 5.3 122 2-131 48-186 (193)
373 2x2e_A Dynamin-1; nitration, h 98.9 1.1E-09 3.7E-14 124.3 8.1 111 49-170 129-254 (353)
374 2www_A Methylmalonic aciduria 98.9 1.3E-09 4.5E-14 123.1 8.6 62 264-332 164-225 (349)
375 3c5h_A Glucocorticoid receptor 98.9 3E-10 1E-14 122.8 2.9 43 290-332 162-211 (255)
376 3def_A T7I23.11 protein; chlor 98.9 1.1E-09 3.8E-14 118.8 6.6 112 3-115 37-164 (262)
377 3t34_A Dynamin-related protein 98.9 4.3E-09 1.5E-13 119.8 11.2 68 266-333 135-217 (360)
378 1h65_A Chloroplast outer envel 98.9 4.4E-09 1.5E-13 114.6 10.9 113 3-116 40-168 (270)
379 1jal_A YCHF protein; nucleotid 98.9 9.4E-09 3.2E-13 115.4 12.9 82 200-302 3-108 (363)
380 3zvr_A Dynamin-1; hydrolase, D 98.9 2.9E-09 9.9E-14 129.7 9.3 125 35-170 134-274 (772)
381 1yrb_A ATP(GTP)binding protein 98.9 2.1E-09 7.1E-14 116.5 7.2 67 266-333 108-185 (262)
382 2j37_W Signal recognition part 98.9 6.4E-10 2.2E-14 130.4 3.4 218 197-443 99-343 (504)
383 1udx_A The GTP-binding protein 98.8 9.5E-09 3.2E-13 118.0 10.7 153 5-174 160-325 (416)
384 2rcn_A Probable GTPase ENGC; Y 98.8 6.2E-09 2.1E-13 116.6 8.4 109 71-223 128-239 (358)
385 1cip_A Protein (guanine nucleo 98.8 5.6E-09 1.9E-13 117.6 7.7 133 34-172 177-342 (353)
386 2qag_A Septin-2, protein NEDD5 98.7 5E-09 1.7E-13 118.9 5.4 153 3-170 38-229 (361)
387 2dby_A GTP-binding protein; GD 98.7 1.2E-07 4.2E-12 107.0 16.7 82 200-302 2-111 (368)
388 1jal_A YCHF protein; nucleotid 98.7 1.7E-08 5.9E-13 113.2 8.6 84 1-85 1-108 (363)
389 1zcb_A G alpha I/13; GTP-bindi 98.7 1.2E-08 4.1E-13 115.2 6.8 132 35-172 186-351 (362)
390 3t34_A Dynamin-related protein 98.7 8.6E-09 2.9E-13 117.3 5.4 106 49-168 135-255 (360)
391 2xxa_A Signal recognition part 98.6 1.6E-07 5.4E-12 108.6 13.3 219 198-445 99-347 (433)
392 3p32_A Probable GTPase RV1496/ 98.6 9.9E-09 3.4E-13 116.4 1.4 114 47-174 169-284 (355)
393 4fid_A G protein alpha subunit 98.6 5.2E-08 1.8E-12 108.3 7.0 139 34-172 145-326 (340)
394 2qpt_A EH domain-containing pr 98.5 5E-08 1.7E-12 116.6 6.7 113 3-116 66-232 (550)
395 2qm8_A GTPase/ATPase; G protei 98.5 3.6E-08 1.2E-12 110.6 5.0 62 264-332 145-206 (337)
396 3ohm_A Guanine nucleotide-bind 98.5 1E-07 3.5E-12 105.6 7.6 131 35-172 152-316 (327)
397 2dby_A GTP-binding protein; GD 98.5 1.6E-07 5.5E-12 106.1 8.4 83 2-85 1-111 (368)
398 3kl4_A SRP54, signal recogniti 98.5 4.8E-07 1.6E-11 103.9 11.9 217 199-443 97-344 (433)
399 2hf9_A Probable hydrogenase ni 98.4 6.6E-08 2.3E-12 102.0 3.7 125 198-332 37-177 (226)
400 4a9a_A Ribosome-interacting GT 98.4 2.1E-07 7E-12 105.1 6.8 110 4-115 74-195 (376)
401 3l82_B F-box only protein 4; T 98.4 4.1E-07 1.4E-11 92.4 8.2 104 57-172 109-221 (227)
402 1azs_C GS-alpha; complex (lyas 98.4 2.7E-07 9.2E-12 105.0 7.3 81 35-115 202-297 (402)
403 2qnr_A Septin-2, protein NEDD5 98.4 4.8E-07 1.6E-11 99.9 8.9 120 200-333 19-169 (301)
404 2www_A Methylmalonic aciduria 98.4 5.3E-08 1.8E-12 109.9 1.2 114 47-173 164-278 (349)
405 2qag_C Septin-7; cell cycle, c 98.4 5.9E-07 2E-11 103.2 9.7 118 200-333 32-181 (418)
406 2p67_A LAO/AO transport system 98.4 1.8E-07 6.2E-12 105.3 4.7 114 47-173 146-260 (341)
407 1yrb_A ATP(GTP)binding protein 98.3 1.3E-06 4.4E-11 94.3 9.2 123 49-174 108-257 (262)
408 2xtz_A Guanine nucleotide-bind 98.3 1.9E-07 6.6E-12 105.0 2.7 135 37-172 164-343 (354)
409 2ohf_A Protein OLA1, GTP-bindi 98.3 7E-07 2.4E-11 101.2 6.4 83 199-302 22-128 (396)
410 2qnr_A Septin-2, protein NEDD5 98.3 6.5E-07 2.2E-11 98.9 6.0 155 2-172 18-212 (301)
411 2wsm_A Hydrogenase expression/ 98.2 2.1E-07 7.2E-12 97.7 1.0 104 48-173 107-213 (221)
412 3e1y_E Eukaryotic peptide chai 98.2 3.6E-06 1.2E-10 87.0 9.2 82 498-585 3-89 (204)
413 3l2o_B F-box only protein 4; s 98.2 4.7E-06 1.6E-10 88.9 9.6 105 57-173 194-307 (312)
414 2qag_B Septin-6, protein NEDD5 98.1 5.7E-06 2E-10 94.5 10.9 136 195-348 38-206 (427)
415 2qag_C Septin-7; cell cycle, c 98.1 2.1E-06 7.1E-11 98.6 5.6 155 3-172 32-225 (418)
416 2v3c_C SRP54, signal recogniti 98.1 1.2E-05 4E-10 93.0 11.5 148 199-351 99-268 (432)
417 3dm5_A SRP54, signal recogniti 98.1 5.9E-05 2E-09 86.5 17.2 147 199-349 100-267 (443)
418 1cip_A Protein (guanine nucleo 98.1 4E-06 1.4E-10 94.3 7.0 82 251-332 177-273 (353)
419 3sop_A Neuronal-specific septi 98.0 1.9E-05 6.3E-10 85.6 10.4 136 200-347 3-169 (270)
420 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 1.1E-05 3.6E-10 91.8 8.3 84 199-302 20-127 (392)
421 1tq4_A IIGP1, interferon-induc 98.0 5.6E-05 1.9E-09 86.4 14.3 113 200-332 70-188 (413)
422 1zcb_A G alpha I/13; GTP-bindi 97.9 7.4E-06 2.5E-10 92.4 6.3 82 251-332 185-281 (362)
423 1j8m_F SRP54, signal recogniti 97.8 3.5E-05 1.2E-09 84.5 8.7 147 199-350 98-268 (297)
424 2hf9_A Probable hydrogenase ni 97.8 4.9E-06 1.7E-10 87.5 1.4 100 51-172 120-222 (226)
425 1f5n_A Interferon-induced guan 97.7 2.3E-05 7.8E-10 93.4 5.3 103 198-318 37-148 (592)
426 2ohf_A Protein OLA1, GTP-bindi 97.6 1.8E-05 6E-10 89.7 3.4 83 2-85 22-128 (396)
427 4fid_A G protein alpha subunit 97.6 5.8E-05 2E-09 83.8 7.0 82 251-332 145-241 (340)
428 4dzz_A Plasmid partitioning pr 97.6 0.0001 3.4E-09 76.0 8.2 81 266-350 75-160 (206)
429 1u0l_A Probable GTPase ENGC; p 97.6 5.2E-05 1.8E-09 83.5 6.1 63 268-332 64-128 (301)
430 3ohm_A Guanine nucleotide-bind 97.6 4.6E-05 1.6E-09 84.3 5.5 82 251-332 151-247 (327)
431 2j37_W Signal recognition part 97.5 0.00016 5.4E-09 84.8 8.7 119 48-171 182-310 (504)
432 1puj_A YLQF, conserved hypothe 97.5 0.00011 3.8E-09 80.0 6.9 60 272-333 4-64 (282)
433 3h2y_A GTPase family protein; 97.4 2.4E-06 8.3E-11 96.9 -7.8 123 4-130 162-302 (368)
434 2xtz_A Guanine nucleotide-bind 97.3 0.00029 9.8E-09 79.1 7.9 68 265-332 181-263 (354)
435 2qm8_A GTPase/ATPase; G protei 97.3 0.00015 5.2E-09 81.0 5.1 114 47-173 145-260 (337)
436 1zu4_A FTSY; GTPase, signal re 97.1 0.00062 2.1E-08 75.4 7.8 149 198-351 104-284 (320)
437 3ec1_A YQEH GTPase; atnos1, at 97.1 0.00091 3.1E-08 75.7 9.3 63 268-333 50-112 (369)
438 3cwq_A Para family chromosome 97.1 0.00039 1.3E-08 72.1 5.5 83 265-350 66-151 (209)
439 2yhs_A FTSY, cell division pro 97.1 0.00076 2.6E-08 78.1 7.9 149 198-351 292-468 (503)
440 1azs_C GS-alpha; complex (lyas 97.0 0.00044 1.5E-08 78.6 5.6 82 251-332 201-297 (402)
441 2ffh_A Protein (FFH); SRP54, s 97.0 0.00066 2.3E-08 77.8 6.4 149 198-351 97-267 (425)
442 2qag_B Septin-6, protein NEDD5 97.0 0.00086 2.9E-08 76.6 7.3 111 4-116 44-190 (427)
443 3l82_B F-box only protein 4; T 97.0 0.0026 9E-08 64.7 9.9 58 276-333 111-177 (227)
444 3cnl_A YLQF, putative uncharac 96.8 0.00047 1.6E-08 74.1 3.2 56 274-333 4-60 (262)
445 3szr_A Interferon-induced GTP- 96.8 0.0034 1.2E-07 75.8 10.5 69 266-334 146-229 (608)
446 2ph1_A Nucleotide-binding prot 96.8 0.0029 1E-07 67.9 8.9 67 265-331 127-194 (262)
447 3e70_C DPA, signal recognition 96.7 0.0012 4.1E-08 73.3 5.6 148 199-351 129-298 (328)
448 1ihu_A Arsenical pump-driving 96.7 0.00088 3E-08 81.0 4.9 43 290-332 489-532 (589)
449 1vma_A Cell division protein F 96.7 0.0024 8.1E-08 70.1 7.9 150 199-352 104-280 (306)
450 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.001 3.6E-08 75.4 4.7 82 3-85 21-127 (392)
451 2yv5_A YJEQ protein; hydrolase 96.6 0.0031 1.1E-07 69.2 8.1 48 286-333 75-124 (302)
452 3kjh_A CO dehydrogenase/acetyl 96.6 0.0018 6E-08 68.8 5.7 86 265-357 130-216 (254)
453 1ls1_A Signal recognition part 96.5 0.0034 1.2E-07 68.6 7.6 149 198-351 97-267 (295)
454 2oze_A ORF delta'; para, walke 96.5 0.003 1E-07 69.2 7.1 82 266-349 154-242 (298)
455 1rj9_A FTSY, signal recognitio 96.5 0.0031 1.1E-07 69.2 6.8 149 199-352 102-278 (304)
456 2px0_A Flagellar biosynthesis 96.4 0.009 3.1E-07 65.3 9.7 144 199-349 105-267 (296)
457 3l2o_B F-box only protein 4; s 96.4 0.016 5.3E-07 62.0 11.0 60 275-334 195-263 (312)
458 2cve_A Hypothetical protein TT 96.3 0.019 6.5E-07 57.4 10.6 109 893-1003 82-190 (191)
459 2v3c_C SRP54, signal recogniti 96.3 0.0058 2E-07 70.3 7.7 121 48-173 179-310 (432)
460 1xe1_A Hypothetical protein PF 96.3 0.02 6.7E-07 52.1 9.4 60 515-581 48-112 (116)
461 3end_A Light-independent proto 96.2 0.005 1.7E-07 67.7 6.8 82 265-352 155-241 (307)
462 3k9g_A PF-32 protein; ssgcid, 96.2 0.0059 2E-07 65.6 7.2 66 265-332 143-210 (267)
463 1vi7_A Hypothetical protein YI 96.2 0.017 5.8E-07 58.9 9.6 109 893-1003 94-202 (217)
464 1tq4_A IIGP1, interferon-induc 95.9 0.015 5E-07 66.4 8.8 159 6-174 72-253 (413)
465 3q5d_A Atlastin-1; G protein, 95.9 0.013 4.4E-07 67.4 8.1 26 197-222 65-90 (447)
466 2xj4_A MIPZ; replication, cell 95.7 0.0025 8.6E-08 69.4 1.3 82 266-349 103-212 (286)
467 3q9l_A Septum site-determining 95.2 0.015 5.1E-07 61.9 5.3 64 266-331 113-185 (260)
468 3dm5_A SRP54, signal recogniti 95.2 0.07 2.4E-06 61.1 10.9 67 48-116 181-253 (443)
469 3sop_A Neuronal-specific septi 95.1 0.019 6.4E-07 61.9 5.6 42 74-116 112-154 (270)
470 3b9q_A Chloroplast SRP recepto 95.0 0.044 1.5E-06 59.9 8.4 146 199-350 100-275 (302)
471 1j8m_F SRP54, signal recogniti 94.9 0.1 3.6E-06 56.7 10.9 65 48-115 179-252 (297)
472 2og2_A Putative signal recogni 94.4 0.061 2.1E-06 60.1 7.7 147 199-351 157-333 (359)
473 1wcv_1 SOJ, segregation protei 94.3 0.1 3.5E-06 55.4 8.9 84 265-350 110-200 (257)
474 3kl4_A SRP54, signal recogniti 94.3 0.14 4.9E-06 58.5 10.5 66 48-115 178-251 (433)
475 1cp2_A CP2, nitrogenase iron p 94.2 0.1 3.6E-06 55.6 8.7 84 266-351 115-204 (269)
476 3e3x_A BIPA; MCSG,PSI2, struct 93.8 0.015 5.1E-07 63.5 1.1 44 795-838 124-168 (332)
477 2afh_E Nitrogenase iron protei 93.4 0.14 4.9E-06 55.3 8.2 84 266-351 118-207 (289)
478 1hyq_A MIND, cell division inh 93.2 0.18 6.1E-06 53.6 8.4 82 265-350 109-191 (263)
479 1d1n_A Initiation factor 2; be 93.1 0.36 1.2E-05 42.6 8.4 72 506-581 11-89 (99)
480 1f5n_A Interferon-induced guan 93.0 0.028 9.7E-07 66.9 1.8 91 7-100 42-147 (592)
481 4dzz_A Plasmid partitioning pr 92.9 0.25 8.6E-06 50.1 8.6 64 49-115 75-143 (206)
482 1g3q_A MIND ATPase, cell divis 92.8 0.22 7.4E-06 51.9 8.1 81 266-350 111-192 (237)
483 2ph1_A Nucleotide-binding prot 92.0 0.33 1.1E-05 51.6 8.4 67 48-114 127-194 (262)
484 2rcn_A Probable GTPase ENGC; Y 91.8 0.33 1.1E-05 54.0 8.3 44 288-333 128-174 (358)
485 3ug7_A Arsenical pump-driving 91.6 0.68 2.3E-05 51.5 10.8 67 291-358 237-314 (349)
486 3lh2_S 4E10_1VI7A_S0_002_N (T8 91.0 0.11 3.8E-06 43.9 2.7 62 940-1002 8-69 (76)
487 1byi_A Dethiobiotin synthase; 90.9 1.1 3.9E-05 45.9 11.0 87 265-351 107-199 (224)
488 3zq6_A Putative arsenical pump 90.5 0.82 2.8E-05 50.3 10.0 58 292-349 223-291 (324)
489 1ko7_A HPR kinase/phosphatase; 90.3 0.19 6.5E-06 54.8 4.4 89 101-222 79-167 (314)
490 3cwq_A Para family chromosome 90.2 0.44 1.5E-05 48.8 6.9 67 48-116 66-134 (209)
491 3bfv_A CAPA1, CAPB2, membrane 90.1 0.51 1.7E-05 50.5 7.6 67 266-333 191-258 (271)
492 1wcv_1 SOJ, segregation protei 90.0 0.81 2.8E-05 48.3 9.1 82 48-131 110-198 (257)
493 4ido_A Atlastin-1; GTPase, GTP 89.9 0.65 2.2E-05 53.1 8.6 112 197-314 65-192 (457)
494 1t9h_A YLOQ, probable GTPase E 89.7 0.44 1.5E-05 51.9 6.8 48 287-334 83-132 (307)
495 3iqw_A Tail-anchored protein t 89.6 1.5 5E-05 48.5 10.9 67 292-358 223-302 (334)
496 2crv_A IF-2MT, translation ini 89.1 1.3 4.3E-05 40.5 8.1 71 505-581 17-97 (120)
497 1ye8_A Protein THEP1, hypothet 88.7 0.13 4.5E-06 51.4 1.5 24 201-224 2-25 (178)
498 1lvg_A Guanylate kinase, GMP k 88.6 0.13 4.3E-06 52.4 1.3 23 200-222 5-27 (198)
499 3bfv_A CAPA1, CAPB2, membrane 88.4 0.71 2.4E-05 49.4 7.1 65 50-115 192-257 (271)
500 1kgd_A CASK, peripheral plasma 88.3 0.15 5E-06 51.0 1.5 23 200-222 6-28 (180)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.1e-128 Score=1194.31 Aligned_cols=685 Identities=42% Similarity=0.708 Sum_probs=608.3
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-------
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------- 265 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------- 265 (1043)
..|.++||||||+||+|||||||+++|++++|.+.+.|.++++ .+++|+++.|++|||||+++.+++.|+
T Consensus 7 ~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~---~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDG---AATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp CSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC---------------------------CCEEEEEECCTTSCSC
T ss_pred CCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCC---CccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 3456899999999999999999999999999999998999888 468999999999999999999999996
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 345 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~ 345 (1043)
++.|||||||||.||+.|+.++|+++|+||+||||.+|++.||+.+|++|.++++|+++||||||+..+++...++++++
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~ 163 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKK 163 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHH
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeeeeccccCCCeeEEEEcccceeEeecCC-CCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc
Q psy11896 346 KVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGP-LGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEE 424 (1043)
Q Consensus 346 ~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~-~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~ 424 (1043)
+++..+.++++|++.+..|.|++|++++++++|... .|..+...++|.++.+.+..+|..++|.+++.|+.++++|+++
T Consensus 164 ~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~ 243 (709)
T 4fn5_A 164 RLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEE 243 (709)
T ss_dssp HHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred hcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 999999999999999999999999999999999654 4677788899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc-CcccceeeeCCCCCCCCCcE
Q psy11896 425 KSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN-GQEDKKVVLNPSRDGKHPFI 503 (1043)
Q Consensus 425 ~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~ 503 (1043)
..++.+++...+++....+.++|++|+||++|.|++.|||+|++++|+|.+.+..+... ..+.......|+ +++|++
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d--~~~pl~ 321 (709)
T 4fn5_A 244 GELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHAD--DNEPFS 321 (709)
T ss_dssp SCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSC--TTSCCE
T ss_pred CCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCC--ccCcce
Confidence 99999999999999999999999999999999999999999999999999876654322 122223455676 899999
Q ss_pred EEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEe
Q psy11896 504 ALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFV 581 (1043)
Q Consensus 504 ~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~ 581 (1043)
++|||+.+|++ |+++|+|||||+|++||+|+|..+++++++++++.++|++++++++++|||||+|.|+ ++.+||||+
T Consensus 322 ~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~ 401 (709)
T 4fn5_A 322 SLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLC 401 (709)
T ss_dssp EEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEE
T ss_pred EEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEec
Confidence 99999999998 9999999999999999999999999999999999999999999999999999999999 889999999
Q ss_pred cCCCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc
Q psy11896 582 TDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661 (1043)
Q Consensus 582 ~~~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~ 661 (1043)
+...+..++++.+|+|+++++|+|++++|++||.++|++|++|||+++++.+++|||++|+|+|||||||+++||+++|
T Consensus 402 -~~~~~~~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~ 480 (709)
T 4fn5_A 402 -SIEKPIILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF 480 (709)
T ss_dssp -CSSSCCBCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT
T ss_pred -CCCccccCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh
Confidence 6677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEecCCeeeEEEeeec-ccceeeeeeeccCCCCceEEEEEEEeeCCC----CCCCCeEEEeccccccCCcchHHHHH
Q psy11896 662 NCPVVLGKPKVAFKETLVQ-PFDFDYLHKKQSGGSGQYGRVIGTLEPLPP----SANTKLEFIDETVGTNVPKPFLPAII 736 (1043)
Q Consensus 662 ~v~i~~~~p~V~yrEti~~-~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~----~~~~~~~f~~~~~~~~l~~~~~~~i~ 736 (1043)
|+++.+++|.|+|||||++ .++.+++|++|+|+++||+.++++++|.+. +.+.++.|.++++++.+|++|+++|+
T Consensus 481 gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~ 560 (709)
T 4fn5_A 481 GVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQ 560 (709)
T ss_dssp CCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGHHHHH
T ss_pred CceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHHHHHHHH
Confidence 9999999999999999986 456789999999999999999999999742 23568999999999999999999999
Q ss_pred HHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhh
Q psy11896 737 KGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816 (1043)
Q Consensus 737 ~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~ 816 (1043)
+||+|++.+|||+|+||+|++|+|.||++|.+++
T Consensus 561 ~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s---------------------------------------------- 594 (709)
T 4fn5_A 561 KGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDS---------------------------------------------- 594 (709)
T ss_dssp HHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTB----------------------------------------------
T ss_pred HHHHHHHhcCcccCCceeeeEEEEEEccccCCCC----------------------------------------------
Confidence 9998888888888888888887777766665544
Q ss_pred hhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccc
Q psy11896 817 VTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAG 896 (1043)
Q Consensus 817 l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~ 896 (1043)
T Consensus 595 -------------------------------------------------------------------------------- 594 (709)
T 4fn5_A 595 -------------------------------------------------------------------------------- 594 (709)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEE
Q psy11896 897 VRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVT 976 (1043)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~ 976 (1043)
+.++|+.|++.||++|+++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++..+
T Consensus 595 ---------------~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~~~~~ 659 (709)
T 4fn5_A 595 ---------------NEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVSGKV 659 (709)
T ss_dssp ---------------CHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEECSSEEE
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEecCCCEE
Confidence 44455566677888889999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHHHHHHHH
Q psy11896 977 IYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNE 1024 (1043)
Q Consensus 977 i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~ 1024 (1043)
|+|++|++|||||+++||++|||+|+|+|+|+||+++|+++++++|++
T Consensus 660 i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~~~~i~~ 707 (709)
T 4fn5_A 660 IRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKK 707 (709)
T ss_dssp EEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHHHHHHHHT
T ss_pred EEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCHHHHHHHh
Confidence 999999999999999999999999999999999999999999998863
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=2.8e-124 Score=1152.37 Aligned_cols=681 Identities=44% Similarity=0.728 Sum_probs=632.9
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-------e
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-------H 267 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-------~ 267 (1043)
+.+++|||+|+||+|+|||||+++|++.++.+...+.++.+ .+++|+++.|+++|+|+......+.|++ +
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g---~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 82 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTAFWSGMAKQYEPH 82 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCC---ceeecChhhHHhcCceeeeceEEEEECCccccCCce
Confidence 45678999999999999999999999988888877777766 4689999999999999999999999988 9
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHh
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKV 347 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l 347 (1043)
.++|||||||.+|..++.++++.+|++|+|+|+.+|++.+|..+|+++...++|+++|+||+|+..+++.++++++++.+
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l 162 (704)
T 2rdo_7 83 RINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRL 162 (704)
T ss_pred eEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeccccCCCeeEEEEcccceeEeecC-CCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCC
Q psy11896 348 GHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEG-PLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKS 426 (1043)
Q Consensus 348 ~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~ 426 (1043)
+..+.++++|++.+..|.|++|++.+++++|+. ..|..+...++|+++.+.+.++|.+|+|.+++.||+++++||++..
T Consensus 163 ~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~ 242 (704)
T 2rdo_7 163 GANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEE 242 (704)
T ss_pred CCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCC
Confidence 999999999999999999999999999999975 4477777788999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccce--eeeCCCCCCCCCcEE
Q psy11896 427 ISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKK--VVLNPSRDGKHPFIA 504 (1043)
Q Consensus 427 ~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~ 504 (1043)
++.+++..++++++..+.++|||||||++|.|++.|||+|++++|+|.+.+.++..... ... ....|+ +++||++
T Consensus 243 l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~-~~~~~~~~~~~--~~~p~~~ 319 (704)
T 2rdo_7 243 LTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDD-GKDTPAERHAS--DDEPFSA 319 (704)
T ss_pred CCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCc-ccccccccccC--CCCceEE
Confidence 99999999999999999999999999999999999999999999999876544321110 111 345565 8899999
Q ss_pred EEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEec
Q psy11896 505 LAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVT 582 (1043)
Q Consensus 505 ~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~ 582 (1043)
+|||+++|++ |+++|+|||||+|++||.|++.+++++++|++|+.++|++++++++|.||||++|.|+ ++.+||||+
T Consensus 320 ~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~- 398 (704)
T 2rdo_7 320 LAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLC- 398 (704)
T ss_pred EEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEe-
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999999 789999999
Q ss_pred CCCCcccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcC
Q psy11896 583 DKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYN 662 (1043)
Q Consensus 583 ~~~~~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~ 662 (1043)
+...+..++++++++|+++++|+|+++.|++||.++|++|.+|||++++.+|+||||++|+|||||||||+++||+++||
T Consensus 399 ~~~~~~~l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~ 478 (704)
T 2rdo_7 399 DPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFN 478 (704)
T ss_pred CCCcccccCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhC
Confidence 56667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEecCCeeeEEEeeeccc-ceeeeeeeccCCCCceEEEEEEEeeC---CCCCCCCeEEEeccccccCCcchHHHHHHH
Q psy11896 663 CPVVLGKPKVAFKETLVQPF-DFDYLHKKQSGGSGQYGRVIGTLEPL---PPSANTKLEFIDETVGTNVPKPFLPAIIKG 738 (1043)
Q Consensus 663 v~i~~~~p~V~yrEti~~~~-~~~~~~~~~~g~~~~~~~v~~~~eP~---~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g 738 (1043)
+++.+++|+|+|||||++++ +..++|++|+||+|||++++++++|+ ++ +.++.|.++++|+.+|++|+++|++|
T Consensus 479 v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~--g~g~~f~~~~~g~~~p~~~~~~v~~g 556 (704)
T 2rdo_7 479 VEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSN--PKGYEFINDIKGGVIPGEYIPAVDKG 556 (704)
T ss_pred ceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCC--CCCcEEEEeccCCcCcHHHHHHHHHH
Confidence 99999999999999999988 88999999999999999999999998 54 56899999999999999999999999
Q ss_pred HHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhh
Q psy11896 739 FKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVT 818 (1043)
Q Consensus 739 ~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~ 818 (1043)
|+|++++|||+|+||+||+|+|.||++|.+
T Consensus 557 ~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~-------------------------------------------------- 586 (704)
T 2rdo_7 557 IQEQLKAGPLAGYPVVDMGIRLHFGSYHDV-------------------------------------------------- 586 (704)
T ss_pred HHHHHhcCCcCCCceeeEEEEEEeccccCC--------------------------------------------------
Confidence 999999998888888888877777666544
Q ss_pred cccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceE
Q psy11896 819 KRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVR 898 (1043)
Q Consensus 819 ~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~ 898 (1043)
T Consensus 587 -------------------------------------------------------------------------------- 586 (704)
T 2rdo_7 587 -------------------------------------------------------------------------------- 586 (704)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEE
Q psy11896 899 MVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIY 978 (1043)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~ 978 (1043)
||++++|+.|+++||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.++|+
T Consensus 587 -----------ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~ 655 (704)
T 2rdo_7 587 -----------DSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIH 655 (704)
T ss_pred -----------CCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCceecCCeEEEE
Confidence 455566777888888999999999999999999999999999999999999999999999998999999
Q ss_pred EEechhhhcCchHHHHhhcCCceEEEeEecccccCCHHHHHHHHHHH
Q psy11896 979 AEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEY 1025 (1043)
Q Consensus 979 a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~ 1025 (1043)
|++|++|+|||+++|||+|||+|+|+|+|+||+++|++++++|+++.
T Consensus 656 a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~ 702 (704)
T 2rdo_7 656 AEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEAR 702 (704)
T ss_pred EEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999764
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.5e-123 Score=1140.54 Aligned_cols=683 Identities=42% Similarity=0.686 Sum_probs=609.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
++.++++||+|+||+|+|||||+++|+...+.+...+.++++ .+++|+.+.|+++|+|+......+.|+++.++|||
T Consensus 5 ~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~---~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liD 81 (693)
T 2xex_A 5 FSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEG---ASQMDWMEQEQDRGITITSAATTAAWEGHRVNIID 81 (693)
T ss_dssp SCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC----------------------------CCSEEEEEETTEEEEEEC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC---ceecccchhhhhcCceEeeeeEEEEECCeeEEEEE
Confidence 355679999999999999999999999888887776666665 46789999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.+|..++.++++.+|++|+|+|+.+|++.++..+|+++...++|+++|+||+|+..+++.+.++++++.++..+.+
T Consensus 82 TPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~ 161 (693)
T 2xex_A 82 TPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAP 161 (693)
T ss_dssp CCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEE
T ss_pred CcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
.++|+..+.++.|++|++.+..++|+.+.|..+...++|..+.+.++.+|++|++.+++.||+++++|+++..++.+++.
T Consensus 162 ~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~ 241 (693)
T 2xex_A 162 IQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELK 241 (693)
T ss_dssp SEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHH
T ss_pred EEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999997223666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcc-cceeeeCCCCCCCCCcEEEEEeeeec
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQE-DKKVVLNPSRDGKHPFIALAFKLEAG 512 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~V~K~~~d 512 (1043)
.++++++..+.++|||||||++|.|++.||++|++++|+|.+++.++...... .......|+ +++||+++|||+++|
T Consensus 242 ~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~a~VfK~~~d 319 (693)
T 2xex_A 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKAD--DSAEFAALAFKVMTD 319 (693)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSC--TTSCCEEEEEEEEEE
T ss_pred HHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCC--CCCceEEEEEEeeec
Confidence 99999999999999999999999999999999999999998865543211110 133466776 899999999999999
Q ss_pred CC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCcccc
Q psy11896 513 KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISL 590 (1043)
Q Consensus 513 ~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~~ 590 (1043)
++ |+++|+|||||+|++||+|++.+++++++|++|+.++|++++++++|.||||+++.|+ ++.+||||+ +...+..+
T Consensus 320 ~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~-~~~~~~~~ 398 (693)
T 2xex_A 320 PYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLC-GEKNDIIL 398 (693)
T ss_dssp TTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEE-ETTCCEEC
T ss_pred CCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEe-cCCCcccc
Confidence 99 9999999999999999999999999999999999999999999999999999999999 889999999 55667789
Q ss_pred cCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCC
Q psy11896 591 ESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKP 670 (1043)
Q Consensus 591 ~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p 670 (1043)
+++++|+|+++++|+|+++.|++||.++|++|.+|||+|++.+|+||||++|+|||||||||+++||+++||+++.+++|
T Consensus 399 ~~~~~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p 478 (693)
T 2xex_A 399 ESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAP 478 (693)
T ss_dssp CCCSSCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred CCcCCCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccc
Q psy11896 671 KVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSG 750 (1043)
Q Consensus 671 ~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g 750 (1043)
+|+|||||+++++..++|++|+||+|||++++++++|+++ +.++.|.|+++|+.+|++|+++|++||+|++++|||+|
T Consensus 479 ~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~--g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g 556 (693)
T 2xex_A 479 MVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNET--GAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAG 556 (693)
T ss_dssp EECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCT--TCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSS
T ss_pred eEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCC--CCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccC
Confidence 9999999999999999999999999999999999999986 56899999999999999999999999999888888888
Q ss_pred cceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCC
Q psy11896 751 SRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK 830 (1043)
Q Consensus 751 ~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~ 830 (1043)
+||+|++|+|.||++|
T Consensus 557 ~pv~~v~v~l~dg~~h---------------------------------------------------------------- 572 (693)
T 2xex_A 557 YPLIDVKAKLYDGSYH---------------------------------------------------------------- 572 (693)
T ss_dssp CCBCSEEEEEEEEECC----------------------------------------------------------------
T ss_pred CceeeEEEEEEecccc----------------------------------------------------------------
Confidence 8888888666665555
Q ss_pred CCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCC
Q psy11896 831 DDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVD 910 (1043)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~ 910 (1043)
++|
T Consensus 573 -----------------------------------------------------------------------------~vd 575 (693)
T 2xex_A 573 -----------------------------------------------------------------------------DVD 575 (693)
T ss_dssp -----------------------------------------------------------------------------TTT
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 445
Q ss_pred CChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCch
Q psy11896 911 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFA 990 (1043)
Q Consensus 911 ~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~ 990 (1043)
|++++|+.|+++||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.++|+|++|++|+|||+
T Consensus 576 s~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP~~e~~gy~ 655 (693)
T 2xex_A 576 SSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYA 655 (693)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEGGGCTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCCeEEEEEEeCHHHHHhHH
Confidence 55666777888889999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHhhcCCceEEEeEecccccCCHHHHHHHHHHH
Q psy11896 991 GDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEY 1025 (1043)
Q Consensus 991 ~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~ 1025 (1043)
++|||+|||+|+|+|+|+||+++|++++++++++.
T Consensus 656 ~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~ 690 (693)
T 2xex_A 656 TSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKN 690 (693)
T ss_dssp HHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred HHhHHhcCCceEEEEEeCcceECChhHHHHHHHHh
Confidence 99999999999999999999999999999999875
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=5.8e-123 Score=1139.94 Aligned_cols=680 Identities=45% Similarity=0.747 Sum_probs=563.9
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+.++++||+|+||+|+|||||+++|++..+.+...+.++++ .+++|+++.|+++|+|+......+.|+++.++|||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~---~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liD 83 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG---AATMDFMEQERERGITITAAVTTCFWKDHRINIID 83 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC-------------------------------CCEEEEEETTEEEEEEC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCC---ceeccCchhhhhcccccccceEEEEECCeEEEEEE
Confidence 345679999999999999999999999988888777777666 46789999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.+|..++.++++.+|++|+|+|+.+|+..++..+|+++...++|+++|+||+|+..+++.+.++++++.++.++.+
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~ 163 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV 163 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~ 433 (1043)
.++|+..+.++.|++|++.+++++|+++.|..+...++|+++.+.++.+|++|+|.+++.||+++++|+++..++.+++.
T Consensus 164 ~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~ 243 (691)
T 1dar_A 164 MQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243 (691)
T ss_dssp CEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHH
T ss_pred eeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999997334666778899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecC
Q psy11896 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK 513 (1043)
Q Consensus 434 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~ 513 (1043)
.++++++..+.++|||||||++|.|++.||++|++++|+|.+.+.++.... .++.....|+ +++|++++|||++.|+
T Consensus 244 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~-~~~~~~~~~~--~~~p~~~~Vfk~~~d~ 320 (691)
T 1dar_A 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP-EGEVVEIHPD--PNGPLAALAFKIMADP 320 (691)
T ss_dssp HHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS-SSCEEEECCC--TTSCCEEEEEEEEEET
T ss_pred HHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCC-CccccccccC--CCCCcEEEEEEEEEcC
Confidence 999999999999999999999999999999999999999998765443221 2234566776 8999999999999999
Q ss_pred C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCc-ccc
Q psy11896 514 F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNS-ISL 590 (1043)
Q Consensus 514 ~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~-~~~ 590 (1043)
+ |+++|+|||||+|++||.|++.+++++++|++|+.++|++++++++|.||||+++.|+ ++.+||||+ +...+ ..+
T Consensus 321 ~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~-~~~~~~~~l 399 (691)
T 1dar_A 321 YVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLV-GEDAPRVIL 399 (691)
T ss_dssp TTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEE-ETTCCCCBC
T ss_pred CCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEe-cCCCccccc
Confidence 8 9999999999999999999999999999999999999999999999999999999999 889999999 55556 788
Q ss_pred cCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCC
Q psy11896 591 ESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKP 670 (1043)
Q Consensus 591 ~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p 670 (1043)
+++++++|+++++|+|+++.|++||.++|++|.+|||++++.+|+||||++|+|||||||||+++||+++||+++.+++|
T Consensus 400 ~~~~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p 479 (691)
T 1dar_A 400 ESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKP 479 (691)
T ss_dssp C--------------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCC
T ss_pred CCCCCCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccc
Q psy11896 671 KVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSG 750 (1043)
Q Consensus 671 ~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g 750 (1043)
+|+|||||+++++.+++|++|+||+|||++++++++|+++ +.++.|.|+++|+.+|++|+++|++||+|++++|||+|
T Consensus 480 ~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~--g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g 557 (691)
T 1dar_A 480 QVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPR--GSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIG 557 (691)
T ss_dssp CBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCT--TCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTS
T ss_pred eEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCC--CCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccC
Confidence 9999999999999999999999999999999999999986 56899999999999999999999999888888888888
Q ss_pred cceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCC
Q psy11896 751 SRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK 830 (1043)
Q Consensus 751 ~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~ 830 (1043)
+||+|++|+|.||++|.
T Consensus 558 ~pv~~v~v~l~dg~~h~--------------------------------------------------------------- 574 (691)
T 1dar_A 558 FPVVDIKVTLYDGSYHE--------------------------------------------------------------- 574 (691)
T ss_dssp CCBCSEEEEEEEECCCT---------------------------------------------------------------
T ss_pred CceeeEEEEEEeeeccc---------------------------------------------------------------
Confidence 88888876666666554
Q ss_pred CCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCC
Q psy11896 831 DDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVD 910 (1043)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~ 910 (1043)
+|
T Consensus 575 ------------------------------------------------------------------------------vd 576 (691)
T 1dar_A 575 ------------------------------------------------------------------------------VD 576 (691)
T ss_dssp ------------------------------------------------------------------------------TT
T ss_pred ------------------------------------------------------------------------------cC
Confidence 44
Q ss_pred CChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCch
Q psy11896 911 SNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFA 990 (1043)
Q Consensus 911 ~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~ 990 (1043)
|++++|+.|+++||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.++|+|++|++|+|||+
T Consensus 577 s~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP~~e~~gy~ 656 (691)
T 1dar_A 577 SSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYA 656 (691)
T ss_dssp BCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETTEEEEEEEEETTTSSSHH
T ss_pred cchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCCeEEEEEEecHHHHhhHH
Confidence 55566777888888999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHhhcCCceEEEeEecccccCCHHHHHHHHH
Q psy11896 991 GDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVN 1023 (1043)
Q Consensus 991 ~~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~ 1023 (1043)
++|||+|||+|+|+|+|+||+++|+++++++++
T Consensus 657 ~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~ 689 (691)
T 1dar_A 657 TDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIK 689 (691)
T ss_dssp HHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHC
T ss_pred HHHHHhcCCceEEEEEeCcceECChhHHHHHHh
Confidence 999999999999999999999999999999985
No 5
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=8e-115 Score=1064.67 Aligned_cols=653 Identities=29% Similarity=0.485 Sum_probs=610.0
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
..+.++|+|+||+|+|||||+++|++..+.+...|.+.++ ..++|+.+.|+.+|+|+......+.|+++.++|||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g---~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTp 82 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG---TTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAP 82 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT---CCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCC---cccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCC
Confidence 4568999999999999999999999887776666666555 3578899999999999999999999999999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
||.+|..++.++++.+|++++|+|+.+|+..++..+|+.+...++|+++|+||+|+. .+..+.++++.+.++ .+.+.+
T Consensus 83 G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~ 160 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPID 160 (665)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECE
T ss_pred CccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-CcceEE
Confidence 999999999999999999999999999999999999999999999999999999999 889999999999999 888899
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
+|+..+.++.|++|++.++.|+|+. |. +...++|+++.+.++..|++|++.+++.|++++++|+++..++.+++..+
T Consensus 161 ~Pi~~~~~~~g~~d~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~ 237 (665)
T 2dy1_A 161 LPLYEGGKWVGLIDVFHGKAYRYEN--GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKA 237 (665)
T ss_dssp EEEEETTEEEEEEETTTTEEEEEET--TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred eeecCCCcccchhhhhhhheeecCC--Cc-eeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 9999999999999999999999975 44 66778999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-
Q psy11896 436 IRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF- 514 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~- 514 (1043)
+++++..+.++|+|++||++|.|++.||++|++++|+|.+.. +++|++++|||++.|++
T Consensus 238 ~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~--------------------~~~p~~~~V~k~~~d~~~ 297 (665)
T 2dy1_A 238 FHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERF--------------------GDGPPLAKVFKVQVDPFM 297 (665)
T ss_dssp HHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHH--------------------CSCSCEEEEEEEEEETTT
T ss_pred HHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccC--------------------CCCCeEEEEEEEEEcCCC
Confidence 999999999999999999999999999999999999996421 46899999999999998
Q ss_pred ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCc--cccc
Q psy11896 515 GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNS--ISLE 591 (1043)
Q Consensus 515 G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~--~~~~ 591 (1043)
|+++|+|||||+|++||.|++.+ +.++|++|+.++|++++++++|.||||+++.|+ ++.+||||+ +...+ ..++
T Consensus 298 G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~-~~~~~~~~~l~ 374 (665)
T 2dy1_A 298 GQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLW-QGEKPESEEVP 374 (665)
T ss_dssp EEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEE-SSSCCCGGGSC
T ss_pred CeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEe-cCCCccccccC
Confidence 99999999999999999999887 678999999999999999999999999999999 789999999 55555 6788
Q ss_pred CCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCe
Q psy11896 592 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPK 671 (1043)
Q Consensus 592 ~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~ 671 (1043)
+++++.|+++++|+|+++.|.+||.++|++|.+|||++++.+|++|||++|+|||||||||+++||+ +||+++.+++|+
T Consensus 375 ~~~~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~ 453 (665)
T 2dy1_A 375 FARLPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPK 453 (665)
T ss_dssp CCCCCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCC
T ss_pred CCCCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCcccc
Q psy11896 672 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 751 (1043)
Q Consensus 672 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~ 751 (1043)
|+|||||+++++..++|++|+||+|||++++++++|++ ++.|.+++.++.+|++|+++|++||+|++++|||+|+
T Consensus 454 V~yrEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~-----g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~ 528 (665)
T 2dy1_A 454 VPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGF 528 (665)
T ss_dssp CCCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSC
T ss_pred EEEEEeeccceeeeeecccccCCCcceEEEEEEEEECC-----CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCC
Confidence 99999999999999999999999999999999999986 6899999999999999999999999888888888888
Q ss_pred ceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCC
Q psy11896 752 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 831 (1043)
Q Consensus 752 pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~ 831 (1043)
||+|++|+|.||++|.
T Consensus 529 pv~~v~v~l~dg~~h~---------------------------------------------------------------- 544 (665)
T 2dy1_A 529 PVMGFKAIVYNGSYHE---------------------------------------------------------------- 544 (665)
T ss_dssp CBCSEEEEEEEEECCT----------------------------------------------------------------
T ss_pred ceeeEEEEEEeeeccC----------------------------------------------------------------
Confidence 8888776666655554
Q ss_pred CceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCC
Q psy11896 832 DWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS 911 (1043)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~ 911 (1043)
+||
T Consensus 545 -----------------------------------------------------------------------------~ds 547 (665)
T 2dy1_A 545 -----------------------------------------------------------------------------VDS 547 (665)
T ss_dssp -----------------------------------------------------------------------------TTB
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 455
Q ss_pred ChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchH
Q psy11896 912 NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAG 991 (1043)
Q Consensus 912 ~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~ 991 (1043)
++++|+.|+++||++|+++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.++|+|++|++|+|||++
T Consensus 548 ~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~a~~P~~e~~~~~~ 627 (665)
T 2dy1_A 548 SDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYK 627 (665)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEGGGCTTHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecCCeEEEEEEECHHHHhhHHH
Confidence 55667778888899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHhhcCCceEEEeEecccccCCHHHHHHHHHHHH
Q psy11896 992 DLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQ 1026 (1043)
Q Consensus 992 ~lr~~t~G~~~~~~~f~~~~~~~~~~~~~~~~~~~ 1026 (1043)
+|||+|+|+|+|+|.|+||+++|++++++++++++
T Consensus 628 ~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~~~~~~~ 662 (665)
T 2dy1_A 628 ALPGLTGGAGAYTLEFSHYAEVPPHLAQRIVQERA 662 (665)
T ss_dssp HHHHHHTTCCEEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HhHhhcCCcEEEEEEeCceeECCccHHHHHHHHHh
Confidence 99999999999999999999999999999998764
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=5.2e-119 Score=1096.83 Aligned_cols=616 Identities=26% Similarity=0.410 Sum_probs=563.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+||||||+||+|||||||+++|++++|.+++.|.++++ .+++|+++.|++||||++++..++.|++++|||||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g---~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 77 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG---TTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGH 77 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCS---CCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCS
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccC---CcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCc
Confidence 58999999999999999999999999999999999888 468999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
.||..|+.++++++|+||+||||.+|+++||+.+|++|.++++|+++||||||+.++++...++++++.++..+...+.
T Consensus 78 ~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~- 156 (638)
T 3j25_A 78 MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK- 156 (638)
T ss_dssp SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC-
T ss_pred HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876543221
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
+++ |...... ... +.++.+.+++.||++++.|+++..++..++...++
T Consensus 157 ----------~~~-------~~~~~~~-----~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~ 204 (638)
T 3j25_A 157 ----------VEL-------YPNVCVT-----NFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEES 204 (638)
T ss_dssp ----------CCS-------CGGGCCC-----CCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHH
T ss_pred ----------eEe-------ecccccc-----ccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHh
Confidence 111 1100000 000 12456778888999999999999999999999999
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
..+..+.++|||||||++|.|++.|||+|++++|+|... +++|++++|||+.+|++ |+
T Consensus 205 ~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~---------------------~~~~~~~~Vfk~~~d~~~G~ 263 (638)
T 3j25_A 205 IRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR---------------------GPSELCGNVFKIEYTKKRQR 263 (638)
T ss_dssp HHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG---------------------SCCCCCBEEBCCCCCSTTCC
T ss_pred hhhcccccccccccccccCCCchhHhhhhhccccCcccc---------------------hhhhhcceeeeeeeeccCce
Confidence 999999999999999999999999999999999999653 57899999999999998 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccCccccCcEEecCCCCcccccCCCCC
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVA 596 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~Gdtl~~~~~~~~~~~~~~~~ 596 (1043)
++|+|||||+|++||.|++.+. .++++.+++.++|+++++++++.||||+++.|.++.+|+|++ +....+.++.+.+|
T Consensus 264 la~~RV~sG~l~~g~~v~~~~~-~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~~~~~~~tl~-d~~~~~~~~~i~~p 341 (638)
T 3j25_A 264 LAYIRLYSGVLHLRDSVRVSEK-EKIKVTEMYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLG-DTKLLPQRKKIENP 341 (638)
T ss_dssp CCBCCBSSBCCCSCCCSSSCCC-CCSSBCCCCSSCCCCBSCCCTTBCCCCSCCCSSSCSSEECSS-SSSSGGGCSCCCCC
T ss_pred EEEEEEEcCcccCCCccccccC-cceeEEeeecccccccccccccccceEEEEeccccccCceec-CCCCcccccCccCC
Confidence 9999999999999999988764 457999999999999999999999999999987778899988 66667778888999
Q ss_pred CceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecCCeeeEEE
Q psy11896 597 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKE 676 (1043)
Q Consensus 597 ~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V~yrE 676 (1043)
+|+++++|+|.++.|++||.++|++|.+|||+++++.+++|||++|+|||||||||+++||+++||+++.+++|+|+|||
T Consensus 342 ~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrE 421 (638)
T 3j25_A 342 HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYME 421 (638)
T ss_dssp CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCB
T ss_pred CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceece
Q psy11896 677 TLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGV 756 (1043)
Q Consensus 677 ti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v 756 (1043)
||+++++ +++++|+|+++||+++++.++|++. ++++.|.+++.++.+|++|+++|++||+|++++| |+|+||+|+
T Consensus 422 ti~~~~~--~~~~~~~~~~~~~~~v~~~~eP~~~--~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v 496 (638)
T 3j25_A 422 RPLKNAE--YTIHIEVPPNPFWASIGLSVSPLPL--GSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDC 496 (638)
T ss_dssp CCCSCCE--ECCCCCSSSCCCCCCCCEECCCCCS--SCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSC
T ss_pred Eecccce--EEEEEecCCCCceEEEEEEEecccC--CCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccce
Confidence 9998765 6788999999999999999999875 6789999999999999999999999999999999 999999999
Q ss_pred EEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCceee
Q psy11896 757 RMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTI 836 (1043)
Q Consensus 757 ~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~ 836 (1043)
+|+|.||++|.+|
T Consensus 497 ~v~l~dg~~h~~~------------------------------------------------------------------- 509 (638)
T 3j25_A 497 KICFKYGLYYSPV------------------------------------------------------------------- 509 (638)
T ss_dssp CCCCCCCCCSSCS-------------------------------------------------------------------
T ss_pred EEEEEECcccCCC-------------------------------------------------------------------
Confidence 9888877766554
Q ss_pred ehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHH
Q psy11896 837 YAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF 916 (1043)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~ 916 (1043)
|++++|
T Consensus 510 --------------------------------------------------------------------------s~~~~f 515 (638)
T 3j25_A 510 --------------------------------------------------------------------------STPADF 515 (638)
T ss_dssp --------------------------------------------------------------------------CCSHHH
T ss_pred --------------------------------------------------------------------------CCHHHH
Confidence 444556
Q ss_pred HHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhh
Q psy11896 917 ILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSS 996 (1043)
Q Consensus 917 ~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~ 996 (1043)
+.|++.||++||++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++.++|+|++|++|||||+++|||+
T Consensus 516 ~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~ 595 (638)
T 3j25_A 516 RMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFF 595 (638)
T ss_dssp HHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTTEEEEECCCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecCCeEEEEEEECHHHhhCHHHHHHhh
Confidence 66777788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEeEecccccCCHHHH
Q psy11896 997 TQGKGEFSMDYSRYSPALPEVQ 1018 (1043)
Q Consensus 997 t~G~~~~~~~f~~~~~~~~~~~ 1018 (1043)
|||+|+|+|+|+||+++|+|+.
T Consensus 596 T~G~a~~~~~f~~y~~vpgdp~ 617 (638)
T 3j25_A 596 TNGRSVCLTELKGYHVTTGEPV 617 (638)
T ss_dssp TTTCCEEECCCCCCCCCCSCCS
T ss_pred CCCcEEEEEEECceEECCCCcc
Confidence 9999999999999999999754
No 7
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=2.1e-110 Score=1047.93 Aligned_cols=674 Identities=25% Similarity=0.371 Sum_probs=555.2
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---------
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--------- 265 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------- 265 (1043)
+..++|||+|+||+|+|||||+++|++..+.+...+ .++ .+++|+++.|+++|+|+.+....+.|+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~---~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i 89 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGE---ARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEI 89 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHHHHC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCC---ceeecCchhhhhcceeEeeceeEEEecccccccccc
Confidence 345789999999999999999999998888776533 222 467899999999999999999888886
Q ss_pred -------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC----C
Q psy11896 266 -------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG----A 334 (1043)
Q Consensus 266 -------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~----~ 334 (1043)
++.++|||||||.+|..++.++++.+|++|+|+|+.+|++.|+..+|+++...++|+++|+||+|+.. .
T Consensus 90 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~ 169 (842)
T 1n0u_A 90 KQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQV 169 (842)
T ss_dssp SSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCC
T ss_pred cccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999973 2
Q ss_pred C-------HHHHHHHHHHHhC-----------CCceeeeeccccCCCeeEEEE------------------cccceeE--
Q psy11896 335 D-------PYRVINQMRQKVG-----------HNAAFLQIPIGLGSETKGIID------------------LIQRKAI-- 376 (1043)
Q Consensus 335 ~-------~~~~~~~i~~~l~-----------~~~~~~~~p~~~~~~~~g~~d------------------l~~~~~~-- 376 (1043)
+ +.+.+++++..+. ..+.+.++|++++ ..||.+ .+....|
T Consensus 170 ~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa--~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d 247 (842)
T 1n0u_A 170 SKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSG--LHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGD 247 (842)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEET--TTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeec--ccccccchhhhhhhcchhcCCCHHHHHHHHhcc
Confidence 3 3445566666552 3333445666544 333332 2233334
Q ss_pred -eecCCCCCeeEeecCc-------hhHHHHHHHHHHHHHHHHhcCChHHHHHHhcc--CCCCHHHHH---HHHHHhhhcC
Q psy11896 377 -YFEGPLGDNLRIEEIP-------ADLKKEAESKRQELIEHVAEGDEILGEMFLEE--KSISEDDIK---KAIRRSTLTR 443 (1043)
Q Consensus 377 -~~~~~~g~~~~~~~i~-------~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~--~~~~~~~l~---~~l~~~~~~~ 443 (1043)
+|++ .|..+...++| ..+.+.+.++|.+|++++++.|++++++||++ ..++.+++. ++|++++ .+
T Consensus 248 ~~~~~-~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~ 325 (842)
T 1n0u_A 248 SFFNP-KTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MR 325 (842)
T ss_dssp CEEET-TTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HH
T ss_pred ccccC-CCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hh
Confidence 5654 24444444444 36778899999999999999999999999997 578888887 8888888 77
Q ss_pred ccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCcccccc---C---cccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 444 KFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN---G---QEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 444 ~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~---~---~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
.|+|+ ++.|||+|++++|+|.+.+.++... . .........|+ +++||+++|||+..+++ |+
T Consensus 326 ~~~pv----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~p~~a~VfK~~~~~~~G~ 393 (842)
T 1n0u_A 326 KFLPA----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCD--PKADLMLYVSKMVPTSDKGR 393 (842)
T ss_dssp HHSBH----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTC--TTSSCEEEEEEEEEBSSTTC
T ss_pred hccch----------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccC--CCCCeEEEEEeeeecCCCCc
Confidence 89998 7999999999999998754433211 0 01112345676 88999999999999988 95
Q ss_pred -EEEEEEecCeecCCCEEE------ecCCCc---EEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccC-cEEecCC
Q psy11896 517 -LTYMRCYQGKLRKGEMIY------NVRTDK---KVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASG-DTFVTDK 584 (1043)
Q Consensus 517 -i~~~RV~sGtl~~gd~v~------~~~~~~---~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~G-dtl~~~~ 584 (1043)
++|+|||||+|++||.|+ |.++++ .++|++|+.++|++++++++|.||||++|.|+ ++.+| +||+ +.
T Consensus 394 ~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~-~~ 472 (842)
T 1n0u_A 394 FYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLT-TS 472 (842)
T ss_dssp EEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEE-SC
T ss_pred eEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeec-CC
Confidence 999999999999999994 444445 68999999999999999999999999999999 66443 6999 56
Q ss_pred CCcccccCCCCC-CceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhc-C
Q psy11896 585 NNSISLESIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-N 662 (1043)
Q Consensus 585 ~~~~~~~~~~~~-~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~-~ 662 (1043)
..+..++++.++ +|+++++|+|+++.|++||.++|++|.+|||+|++.++ ||||++|+|||||||||+++||+++| |
T Consensus 473 ~~~~~l~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~ 551 (842)
T 1n0u_A 473 ETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAG 551 (842)
T ss_dssp TTCCCBCCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSC
T ss_pred CCccccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcC
Confidence 667788888888 69999999999999999999999999999999999998 89999999999999999999999999 9
Q ss_pred ccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCC--------------------------------
Q psy11896 663 CPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPP-------------------------------- 710 (1043)
Q Consensus 663 v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~-------------------------------- 710 (1043)
+++.+++|+|+|||||+++++..+..+. .+.|.++++++||+++
T Consensus 552 vev~~~~P~V~yrETi~~~~~~~~~~~~----~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~ 627 (842)
T 1n0u_A 552 VPLKISPPVVAYRETVESESSQTALSKS----PNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDV 627 (842)
T ss_dssp SCEEEECCCCCCEEEESSCCSSCEEEEC----TTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCH
T ss_pred CceEecCcEEEEEEeeccccccceeecc----CCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcch
Confidence 9999999999999999988765332221 2345689999999862
Q ss_pred -----------CCCCCeEEEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHH
Q psy11896 711 -----------SANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 779 (1043)
Q Consensus 711 -----------~~~~~~~f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~ 779 (1043)
+.++++.|+|.++|+.+|++|+++|++||+||+++|||+|+||+||+|+|.||++|...+
T Consensus 628 ~~~~~iw~~~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~--------- 698 (842)
T 1n0u_A 628 TDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAI--------- 698 (842)
T ss_dssp HHHHTEEEESSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGG---------
T ss_pred hhhhceeeeccCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCcc---------
Confidence 123579999999999999999999999999999999999999999998888887762100
Q ss_pred HHHHHHHHHhccccccccceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeec
Q psy11896 780 HGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLK 859 (1043)
Q Consensus 780 ~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (1043)
T Consensus 699 -------------------------------------------------------------------------------- 698 (842)
T 1n0u_A 699 -------------------------------------------------------------------------------- 698 (842)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecce
Q psy11896 860 DGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPI 939 (1043)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~ 939 (1043)
+...+||++|+++||++||++|+|+|||||
T Consensus 699 --------------------------------------------------~~~~g~f~~a~~~a~~~a~~~a~p~LLEPi 728 (842)
T 1n0u_A 699 --------------------------------------------------HRGGGQIIPTMRRATYAGFLLADPKIQEPV 728 (842)
T ss_dssp --------------------------------------------------GSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred --------------------------------------------------ccchhHHHHHHHHHHHHHHHhCCCeEEeeE
Confidence 122578999999999999999999999999
Q ss_pred EEEEEEecCcchhhhhhHhhccCeEEeccccCC--CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccCCHH-
Q psy11896 940 MSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD--DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPE- 1016 (1043)
Q Consensus 940 ~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~~~~- 1016 (1043)
|.|+|+||++++|+||+||++|||+|+++++.+ ++++|+|++|++|||||+++|||+|||+|+|+|+|+||+++|++
T Consensus 729 ~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~vp~~~ 808 (842)
T 1n0u_A 729 FLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDP 808 (842)
T ss_dssp EEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCSCT
T ss_pred EEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeCCCCc
Confidence 999999999999999999999999999999875 47999999999999999999999999999999999999999998
Q ss_pred -----HHHHHHHHHHHhcCCchH
Q psy11896 1017 -----VQDRLVNEYQEATNPQAA 1034 (1043)
Q Consensus 1017 -----~~~~~~~~~~~~~~~~~~ 1034 (1043)
++.++++++|+||||+..
T Consensus 809 ~~~~~~a~~~~~~~R~rKGl~~~ 831 (842)
T 1n0u_A 809 LDPTSKAGEIVLAARKRHGMKEE 831 (842)
T ss_dssp TCTTSHHHHHHHHHHHHTTCCSS
T ss_pred cchhhHHHHHHHHHHHhCCCCCC
Confidence 899999999999999753
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=6.8e-86 Score=788.44 Aligned_cols=484 Identities=25% Similarity=0.425 Sum_probs=395.6
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcc-ccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDN-VGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
...++|||||+||+|||||||+++|++++|.+.+.|.++++.. ..+++|+++.|++|||||.++..++.|++++|||||
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlID 106 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLD 106 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEEC
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEe
Confidence 4567999999999999999999999999999999999987742 246899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCcee
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAF 353 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~ 353 (1043)
||||.||+.|+.++|+++|+||+||||.+|+++||+.+|++|.++++|+++||||||+.++++.++++++++.|+..+.|
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p 186 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAP 186 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEE
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHH-HHHHHHHHHHHHHHhcCChHHHHHHhc-cCCCCHHH
Q psy11896 354 LQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK-KEAESKRQELIEHVAEGDEILGEMFLE-EKSISEDD 431 (1043)
Q Consensus 354 ~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~-~~~~~~r~~l~e~l~e~dd~l~~~~l~-~~~~~~~~ 431 (1043)
+++|++.+..|.|++|++.++++.|++..|........+.... ..+.+......+.. ...++.+.+ .....
T Consensus 187 ~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~--- 259 (548)
T 3vqt_A 187 MTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQL----RMDLALLEEAGTPFD--- 259 (548)
T ss_dssp SEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHH----HHHHHHHHHHCCCCC---
T ss_pred EEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHh----hhHHHHHhhccCchh---
Confidence 9999999999999999999999999876654432222111100 01111111100000 001111111 11222
Q ss_pred HHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeee
Q psy11896 432 IKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA 511 (1043)
Q Consensus 432 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 511 (1043)
+++++.+.++|||||||++|.|++.|||+|++++|+|.+..... ....+ .++||+++|||+..
T Consensus 260 -----~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~---------~~~~~---~~~p~~a~vfKi~~ 322 (548)
T 3vqt_A 260 -----EERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT---------RVVEP---GEEAFTGVVFKIQA 322 (548)
T ss_dssp -----HHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS---------SEECT---TCSSCEEEEEEEEC
T ss_pred -----HHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccc---------cccCC---CCcCceEEEEEEEc
Confidence 23456789999999999999999999999999999997643211 01112 46899999999988
Q ss_pred c---CC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCC
Q psy11896 512 G---KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNN 586 (1043)
Q Consensus 512 d---~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~ 586 (1043)
+ ++ |+++|+|||||+|++||.|+|.++++++++++++.++|++++++++|.|||||+|.|+ ++.+||||+ +...
T Consensus 323 ~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~-~~~~ 401 (548)
T 3vqt_A 323 NMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFT-ESKE 401 (548)
T ss_dssp C-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEE-SSSS
T ss_pred cCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEec-CCCC
Confidence 7 56 9999999999999999999999999999999999999999999999999999999999 889999999 6667
Q ss_pred cccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEE
Q psy11896 587 SISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVV 666 (1043)
Q Consensus 587 ~~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~ 666 (1043)
+..++++++++|+++++|+|+++.|.++|.++|++|.++||+ ++..+++|||++|+|||||||||+++||+++||+++.
T Consensus 402 ~~~~~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~-~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~ 480 (548)
T 3vqt_A 402 VLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAV-QLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAV 480 (548)
T ss_dssp CCCBCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSS-EEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEE
T ss_pred ccccCCCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCce-eEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEE
Confidence 788899999999999999999999999999999999999985 5667899999999999999999999999999999976
Q ss_pred -----ecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEE
Q psy11896 667 -----LGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGT 704 (1043)
Q Consensus 667 -----~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~ 704 (1043)
++.|+|+|||||++.++++++|++|+|++|||+.+++.
T Consensus 481 ~e~v~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~ 523 (548)
T 3vqt_A 481 YEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLA 523 (548)
T ss_dssp EEECSCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEE
T ss_pred EeeccccCceEEecCCccchhhhhhhhhheeeecCCCCEEEEe
Confidence 56799999999999999999999999999999998773
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2.9e-73 Score=679.61 Aligned_cols=462 Identities=28% Similarity=0.499 Sum_probs=384.5
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-----eeE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-----HNI 269 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~i 269 (1043)
+.+++|||+++||+|||||||+++|++.++.+...+ . + .+++|+++.|+++|+|+......+.|+. +.+
T Consensus 2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~--~---~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~i 75 (600)
T 2ywe_A 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-K--R---EQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKL 75 (600)
T ss_dssp CGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------------CCCCSEEEEEECTTSCEEEE
T ss_pred CccCceEEEEECCCCCCHHHHHHHHHhccCCccccc-c--c---ccccccchhhhcccceeeeeEEEEEEEcCCCCeEEE
Confidence 456799999999999999999999998877765432 1 1 4578999999999999999998888863 799
Q ss_pred EEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCC
Q psy11896 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGH 349 (1043)
Q Consensus 270 ~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~ 349 (1043)
+|||||||.||..++.++++.+|++|+|+|+.+|++.||...|..+...++|+++|+||+|+..+++++..+++.+.++.
T Consensus 76 nliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 76 HLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGL 155 (600)
T ss_dssp EEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCC
T ss_pred EEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988876666666554432
Q ss_pred CceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCH
Q psy11896 350 NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISE 429 (1043)
Q Consensus 350 ~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~ 429 (1043)
..
T Consensus 156 ~~------------------------------------------------------------------------------ 157 (600)
T 2ywe_A 156 DP------------------------------------------------------------------------------ 157 (600)
T ss_dssp CG------------------------------------------------------------------------------
T ss_pred Cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred HHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEee
Q psy11896 430 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKL 509 (1043)
Q Consensus 430 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 509 (1043)
.+++++||++|.|++.|+++|.+++|+|... +++|+.++||++
T Consensus 158 ----------------~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~---------------------~~~pl~~lV~~~ 200 (600)
T 2ywe_A 158 ----------------EEAILASAKEGIGIEEILEAIVNRIPPPKGD---------------------PQKPLKALIFDS 200 (600)
T ss_dssp ----------------GGCEECBTTTTBSHHHHHHHHHHHSCCCCCC---------------------TTSCCEEEEEEE
T ss_pred ----------------ccEEEEEeecCCCchHHHHHHHHhccccccc---------------------ccCCcceeEEEE
Confidence 1368899999999999999999999998532 678999999999
Q ss_pred eecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc-cC----ccccCcEEecC
Q psy11896 510 EAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-GV----DCASGDTFVTD 583 (1043)
Q Consensus 510 ~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-gl----~~~~Gdtl~~~ 583 (1043)
+.|++ |+++++||++|++++||.|++.+++..+++.+++.+.+ +..+++++.||||+++. |+ ++.+||||+ +
T Consensus 201 ~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~-~ 278 (600)
T 2ywe_A 201 YYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTIT-H 278 (600)
T ss_dssp EEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEE-E
T ss_pred eecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEE-e
Confidence 99998 99999999999999999999999999999999998887 58899999999999874 54 688999999 4
Q ss_pred CCCc--ccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEe-----chhhHHHHHHHH
Q psy11896 584 KNNS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQR 656 (1043)
Q Consensus 584 ~~~~--~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g-----~GelHlei~~~r 656 (1043)
.+.+ .++++++.++|+++++++|.+..|.++|.++|++|.+|||+++++ +||+++++.| ||||||||+++|
T Consensus 279 ~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~er 356 (600)
T 2ywe_A 279 AKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQER 356 (600)
T ss_dssp SSSCCSSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHH
T ss_pred CCCccccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHH
Confidence 4444 468888999999999999999999999999999999999999987 5789987777 999999999999
Q ss_pred HHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHH
Q psy11896 657 MEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAII 736 (1043)
Q Consensus 657 L~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~ 736 (1043)
|+++||+++.+++|+|+||||+++. | + .+.|.|
T Consensus 357 l~re~~~~v~~~~P~V~yreti~~~-----------g---~-----------------~~~~~~---------------- 389 (600)
T 2ywe_A 357 LEREYGVKIITTAPNVIYRVKKKFT-----------D---E-----------------VIEVRN---------------- 389 (600)
T ss_dssp HHHHSCCCEEECCCEECEEEEETTC-----------S---S-----------------CEEESS----------------
T ss_pred HHhhcCceEEEEeeeEEEEEEecCC-----------C---c-----------------EEEEeC----------------
Confidence 9999999999999999999999741 1 1 112211
Q ss_pred HHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhh
Q psy11896 737 KGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 816 (1043)
Q Consensus 737 ~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~ 816 (1043)
| +|+|+.|
T Consensus 390 ----------p-~~~p~~~------------------------------------------------------------- 397 (600)
T 2ywe_A 390 ----------P-MDFPDNA------------------------------------------------------------- 397 (600)
T ss_dssp ----------G-GGSCSCG-------------------------------------------------------------
T ss_pred ----------h-hhCCCCC-------------------------------------------------------------
Confidence 1 2344322
Q ss_pred hhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccc
Q psy11896 817 VTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAG 896 (1043)
Q Consensus 817 l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~ 896 (1043)
T Consensus 398 -------------------------------------------------------------------------------- 397 (600)
T 2ywe_A 398 -------------------------------------------------------------------------------- 397 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccC-CCcE
Q psy11896 897 VRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK-DDWV 975 (1043)
Q Consensus 897 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~ 975 (1043)
+. -+.||||||.++|.+|++|+|+||++|++|||++++++.. +++.
T Consensus 398 ---------------~~------------------~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~~ 444 (600)
T 2ywe_A 398 ---------------GL------------------IEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTV 444 (600)
T ss_dssp ---------------GG------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETTEE
T ss_pred ---------------cc------------------cccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCCEE
Confidence 00 0368999999999999999999999999999999999985 4689
Q ss_pred EEEEEechhhh-cCchHHHHhhcCCceEEEeEecccccC
Q psy11896 976 TIYAEIPLNDM-FGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 976 ~i~a~~P~~e~-~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
.|+|++|++|+ |||+++|||.|+|.|+|.++|+||+++
T Consensus 445 ~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~ 483 (600)
T 2ywe_A 445 YLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483 (600)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred EEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEc
Confidence 99999999999 899999999999999999999999998
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=2.5e-72 Score=673.47 Aligned_cols=458 Identities=30% Similarity=0.495 Sum_probs=378.9
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-----eeEEE
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-----HNINI 271 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~i~l 271 (1043)
+++|||+|+||+|||||||+++|++.++.+.... . ..+++|+++.|+++|+|+......+.|+. +.++|
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~-----~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~l 75 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-M-----EAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNF 75 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------------CEEEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-c-----cccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEE
Confidence 4689999999999999999999998887775421 1 14588999999999999999999998863 89999
Q ss_pred EcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCc
Q psy11896 272 IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNA 351 (1043)
Q Consensus 272 iDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~ 351 (1043)
||||||.||..++.++++.+|++|+|+|+.+|++.||...|..+...++|+++|+||+|+..+++++..+++.+.++...
T Consensus 76 iDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 76 IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA 155 (599)
T ss_dssp EECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998887766666665543210
Q ss_pred eeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHH
Q psy11896 352 AFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDD 431 (1043)
Q Consensus 352 ~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~ 431 (1043)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeee
Q psy11896 432 IKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA 511 (1043)
Q Consensus 432 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 511 (1043)
.+++++||++|.|++.|+++|.+++|+|... +++|+.++||+++.
T Consensus 156 --------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~---------------------~~~p~~alI~d~~~ 200 (599)
T 3cb4_D 156 --------------TDAVRCSAKTGVGVQDVLERLVRDIPPPEGD---------------------PEGPLQALIIDSWF 200 (599)
T ss_dssp --------------TTCEEECTTTCTTHHHHHHHHHHHSCCCCCC---------------------TTSCCEEEEEEEEE
T ss_pred --------------ceEEEeecccCCCchhHHHHHhhcCCCcccc---------------------ccCCceeeeeeccc
Confidence 1357889999999999999999999999532 67899999999999
Q ss_pred cCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc-cC----ccccCcEEecCCC
Q psy11896 512 GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-GV----DCASGDTFVTDKN 585 (1043)
Q Consensus 512 d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~-gl----~~~~Gdtl~~~~~ 585 (1043)
+++ |+++++||++|+|++||.+.+.++++.+++.+++.+.+. .++++++.|||++++. |+ ++.+||||+ +..
T Consensus 201 d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~-~~~ 278 (599)
T 3cb4_D 201 DNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLT-LAR 278 (599)
T ss_dssp ETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEE-ESS
T ss_pred cccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEee-ecC
Confidence 998 999999999999999999999999999999999988875 8899999999999874 54 678999999 444
Q ss_pred Cc--ccccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEe-----chhhHHHHHHHHHH
Q psy11896 586 NS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRME 658 (1043)
Q Consensus 586 ~~--~~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g-----~GelHlei~~~rL~ 658 (1043)
.+ ..++++..++|+++++++|.+..|.++|.++|.+|.++||+|++. ++|+++++.| ||+|||||+++||+
T Consensus 279 ~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~ 356 (599)
T 3cb4_D 279 NPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLE 356 (599)
T ss_dssp SCCSSCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHH
T ss_pred CccccccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHH
Confidence 44 567888999999999999999999999999999999999999987 6899988777 99999999999999
Q ss_pred hhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeEEEeccccccCCcchHHHHHHH
Q psy11896 659 REYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKG 738 (1043)
Q Consensus 659 ~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~l~~~~~~~i~~g 738 (1043)
++||+++.+++|+|+||||++.. ++++|.| |.
T Consensus 357 ~e~~~~~~~~~P~V~yreti~~g--------------------------------~~~~~~~-------p~--------- 388 (599)
T 3cb4_D 357 REYDLDLITTAPTVVYEVETTSR--------------------------------EVIYVDS-------PS--------- 388 (599)
T ss_dssp HTSCCCEEECCCEECEEEEESSS--------------------------------CEEEESS-------GG---------
T ss_pred HHcCceEEEEeeeEEEEEEecCC--------------------------------ceEEecC-------hh---------
Confidence 99999999999999999998741 1233322 10
Q ss_pred HHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhccccccccceeeccccccccccchhhhhh
Q psy11896 739 FKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVT 818 (1043)
Q Consensus 739 ~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP~~~~ei~~p~~~~g~v~~~l~ 818 (1043)
++|..
T Consensus 389 -----------~~p~~---------------------------------------------------------------- 393 (599)
T 3cb4_D 389 -----------KLPAV---------------------------------------------------------------- 393 (599)
T ss_dssp -----------GSCCG----------------------------------------------------------------
T ss_pred -----------hCCCc----------------------------------------------------------------
Confidence 11100
Q ss_pred cccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHhhhhhhhhhcCccccccccceE
Q psy11896 819 KRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVR 898 (1043)
Q Consensus 819 ~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~Gpl~~e~~~~~~ 898 (1043)
|
T Consensus 394 --------------------------------------------------------------------~----------- 394 (599)
T 3cb4_D 394 --------------------------------------------------------------------N----------- 394 (599)
T ss_dssp --------------------------------------------------------------------G-----------
T ss_pred --------------------------------------------------------------------c-----------
Confidence 0
Q ss_pred EEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEE
Q psy11896 899 MVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIY 978 (1043)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~ 978 (1043)
.-+.||||||.++|.+|++|+|+||++|++|||++++++..++...|+
T Consensus 395 --------------------------------~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~~~~i~ 442 (599)
T 3cb4_D 395 --------------------------------NIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALT 442 (599)
T ss_dssp --------------------------------GEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTTEEEEE
T ss_pred --------------------------------ccchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCCeEEEE
Confidence 003689999999999999999999999999999999999988899999
Q ss_pred EEechhhh-cCchHHHHhhcCCceEEEeEecccccC
Q psy11896 979 AEIPLNDM-FGFAGDLRSSTQGKGEFSMDYSRYSPA 1013 (1043)
Q Consensus 979 a~~P~~e~-~g~~~~lr~~t~G~~~~~~~f~~~~~~ 1013 (1043)
|++|++|+ |||+++|||+|+|.|+|.++|+||+++
T Consensus 443 ~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 443 YEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp EEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred EEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEe
Confidence 99999999 899999999999999999999999998
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=1.7e-69 Score=644.23 Aligned_cols=460 Identities=27% Similarity=0.445 Sum_probs=367.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcc-ccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDN-VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.+++||+++||+|+|||||+++|+...+.+...+.+.++.. ..+++|+++.|+.+|+|+......+.|+++.++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 46899999999999999999999988888877666554322 24578999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
||.+|..++.++++.+|++|+|+|+.+|+..++..+++.+...++|+++|+||+|+..++..+.++++.+.++..+.+++
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~ 170 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPIT 170 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEe-ecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRI-EEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~-~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
+|+..+..+.|+.|+++..++.|....|..... .++| .+.+. .|.+.+ ++.++++|+++.++..+++..
T Consensus 171 ~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~-~~~~~------~l~e~~---~~~~~~~~~e~~~l~~~~~~~ 240 (529)
T 2h5e_A 171 WPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVK-GLNNP------DLDAAV---GEDLAQQLRDELELVKGASNE 240 (529)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEEC-CSSCH------HHHHHH---CHHHHHHHHHHHHHHHHHSCC
T ss_pred cceecccCcceeeehhhhhHhhhcccCCCcccccccCC-CCCHH------HHHHhh---CHHHHHHhhcccchhhhhhhh
Confidence 999999999999999999999996433432111 2333 11111 122222 667778887765444443333
Q ss_pred HHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeee--c
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA--G 512 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~--d 512 (1043)
.+++++..+.++|||||||++|.||+.||++|.+++|+|...... ...+.+ .++||+++|||+.. |
T Consensus 241 ~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~---------~~~~~~---~~~~~~~~vfKi~~~~d 308 (529)
T 2h5e_A 241 FDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD---------TRTVEA---SEDKFTGFVFKIQANMD 308 (529)
T ss_dssp CCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS---------SCEECT---TCCSCEEEEEEECSSCC
T ss_pred hhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCccccc---------ccccCC---CCCCeEEEEEEEeeccC
Confidence 456678889999999999999999999999999999999754210 001222 26899999999976 3
Q ss_pred -CC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccc
Q psy11896 513 -KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSIS 589 (1043)
Q Consensus 513 -~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~ 589 (1043)
++ |+++|+||+||+|++||.|++.+.+++++|++++.++|.+++++++|.||||+++.|+ ++.+||||+ +.. ...
T Consensus 309 ~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~-~~~-~~~ 386 (529)
T 2h5e_A 309 PKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFT-QGE-MMK 386 (529)
T ss_dssp SSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEE-SSC-CCC
T ss_pred cCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEee-cCC-ccc
Confidence 44 9999999999999999999999999999999999999999999999999999999999 889999999 444 567
Q ss_pred ccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecC
Q psy11896 590 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669 (1043)
Q Consensus 590 ~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~ 669 (1043)
++++++++|+++++|+|+++.|.++|.++|++|.+||| +++..+++|||++|+|||||||||+++||+++||+++.+++
T Consensus 387 ~~~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~ 465 (529)
T 2h5e_A 387 FTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYES 465 (529)
T ss_dssp BCCCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEEC
T ss_pred cCCCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEec
Confidence 88888999999999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred CeeeEEEeeecc
Q psy11896 670 PKVAFKETLVQP 681 (1043)
Q Consensus 670 p~V~yrEti~~~ 681 (1043)
|.|+|||||...
T Consensus 466 ~~v~y~eti~~~ 477 (529)
T 2h5e_A 466 VNVATARWVECA 477 (529)
T ss_dssp CCCSEEEEEECS
T ss_pred CceeEEEEEcCC
Confidence 999999999644
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=2e-69 Score=642.71 Aligned_cols=461 Identities=26% Similarity=0.437 Sum_probs=394.9
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCc-cccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKD-NVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
.+++|||+|+||+|+|||||+++|+++.+.+...+.+..+. ...+++|+++.|+++|+|+......+.|+++.++||||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 45689999999999999999999999999988777766532 12457899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceee
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 354 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~ 354 (1043)
|||.+|..++.++++.+|++|+|+|+.+|+..++..+|+.+...++|+++|+||+|+..++..+.++++.+.++..+.++
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPV 169 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHH
Q psy11896 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434 (1043)
Q Consensus 355 ~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~ 434 (1043)
++|++.+..|.|++|++.++++.|+...|......++|+++.+. ..++.|.+ . ++.|+++..+..+....
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-------~-~~~~~e~~~l~~~~~~~ 239 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNP--ELDKKLGD-------L-ASELRNEIELVKGASHP 239 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCH--HHHHHHTH-------H-HHHHHHHHHHHHHHSCC
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchH--HHHHHHHH-------H-HHHHhhhcchhhhhhhH
Confidence 99999999999999999999999976555443333444333221 12222211 1 34454442222111111
Q ss_pred HHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeee--c
Q psy11896 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA--G 512 (1043)
Q Consensus 435 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~--d 512 (1043)
.+++++..+.++|||||||++|.||++||++|++++|+|....... ..+.+ .++|++++|||+.. |
T Consensus 240 ~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~---------~~~~~---~~~~~~~~VFKi~~~~d 307 (528)
T 3tr5_A 240 FEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS---------RLVKP---EEEKFSGFVFKIQANMD 307 (528)
T ss_dssp CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS---------SCBCT---TSSSCEEEEEEEEECCC
T ss_pred HHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccc---------eeeCC---CcccceeEEEEEecccC
Confidence 1266778899999999999999999999999999999997653211 01112 36899999999986 7
Q ss_pred C-C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-ccccCcEEecCCCCccc
Q psy11896 513 K-F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSIS 589 (1043)
Q Consensus 513 ~-~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~Gdtl~~~~~~~~~ 589 (1043)
+ + |+++|+|||||+|++||.|++.++++++++++++.++|++++++++|.||||+++.|+ ++++||||+ + ..+..
T Consensus 308 p~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~-~-~~~~~ 385 (528)
T 3tr5_A 308 PGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFT-Q-GERFK 385 (528)
T ss_dssp -CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEE-S-SCCCC
T ss_pred ccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEc-C-CCCcc
Confidence 7 6 9999999999999999999999999999999999999999999999999999999999 889999999 4 34567
Q ss_pred ccCCCCCCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEEEEcCCCCcEEEEechhhHHHHHHHHHHhhcCccEEecC
Q psy11896 590 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669 (1043)
Q Consensus 590 ~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~~~~~etge~il~g~GelHlei~~~rL~~~~~v~i~~~~ 669 (1043)
++++.++.|+++++|+|+++.|.++|.+||++|.+|||+ ++..+++|||++|+|||||||||+++||+++||+++.+++
T Consensus 386 ~~~~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~ 464 (528)
T 3tr5_A 386 FTGIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYES 464 (528)
T ss_dssp BCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEec
Confidence 788888899999999999999999999999999999996 7888999999999999999999999999999999999999
Q ss_pred CeeeEEEeeecc
Q psy11896 670 PKVAFKETLVQP 681 (1043)
Q Consensus 670 p~V~yrEti~~~ 681 (1043)
|.|+|+++|...
T Consensus 465 ~~v~~~~~i~~~ 476 (528)
T 3tr5_A 465 VNVVTARWVICD 476 (528)
T ss_dssp CSCCEEEEEECS
T ss_pred CceEEEEEecCC
Confidence 999999999753
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.9e-37 Score=337.23 Aligned_cols=196 Identities=23% Similarity=0.395 Sum_probs=160.3
Q ss_pred EEccC-ccccCcEEecCCCCcccccCCCCCCceEEEEEEeCCC----cc-----HHHHHHHHHHHhcCCCeeEEEEcCCC
Q psy11896 568 ALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNN----KD-----RDNFSKAVQRFTKEDPTFHFFYDPES 637 (1043)
Q Consensus 568 ~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~pv~~~~iep~~~----~d-----~~kl~~~L~~l~~eDpsl~~~~~~et 637 (1043)
++.|+ ++.+||||+ +...+..++++.+++|+++++|+|++. +| ..+|.++|.+|.++||+|++..++++
T Consensus 2 av~Gl~~~~iGDTl~-~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t 80 (332)
T 3e3x_A 2 NATGLGELKISDTIC-AQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDP 80 (332)
T ss_dssp ----------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSST
T ss_pred CccCCCCCccCCEEc-CCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCC
Confidence 46788 789999999 666778889999999999999999987 65 67999999999999999999999999
Q ss_pred CcEEEEechhhHHHHHHHHHHhhcCccEEecCCeeeEEEeeecccceeeeeeeccCCCCceEEEEEEEeeCCCCCCCCeE
Q psy11896 638 KETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLE 717 (1043)
Q Consensus 638 ge~il~g~GelHlei~~~rL~~~~~v~i~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~eP~~~~~~~~~~ 717 (1043)
++++|+|||||||+|+++||+++ |+++.+++|+|+|||| . |
T Consensus 81 ~~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt--~------------G------------------------ 121 (332)
T 3e3x_A 81 DKFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE--D------------G------------------------ 121 (332)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE--T------------T------------------------
T ss_pred CeEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE--C------------C------------------------
Confidence 99999999999999999999999 9999999999999997 0 0
Q ss_pred EEeccccccCCcchHHHHHHHHHHHHHcCCccccceeceEEEeecCCccccCChhhHHHHHHHHHHHHHHHhcccccccc
Q psy11896 718 FIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 797 (1043)
Q Consensus 718 f~~~~~~~~l~~~~~~~i~~g~~~~~~~G~l~g~pv~~v~~~l~d~~~~~~~~~~~~~~~a~~~a~~~a~~~~~~~llEP 797 (1043)
.
T Consensus 122 ---------------------------------------~---------------------------------------- 122 (332)
T 3e3x_A 122 ---------------------------------------Q---------------------------------------- 122 (332)
T ss_dssp ---------------------------------------E----------------------------------------
T ss_pred ---------------------------------------E----------------------------------------
Confidence 0
Q ss_pred ceeeccccccccccchhhhhhcccceecccCCCCCceeeehhhhcccccCCCcccccceeeccCCCCcccchhhHHHHHh
Q psy11896 798 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 877 (1043)
Q Consensus 798 ~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1043)
T Consensus 123 -------------------------------------------------------------------------------- 122 (332)
T 3e3x_A 123 -------------------------------------------------------------------------------- 122 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhcCccccccccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhH
Q psy11896 878 HGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNL 957 (1043)
Q Consensus 878 ~gf~~~~~~Gpl~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~ 957 (1043)
||||||.++|.||++++|+||++
T Consensus 123 ---------------------------------------------------------llEPi~~v~I~vPee~~G~Vm~~ 145 (332)
T 3e3x_A 123 ---------------------------------------------------------LMEPFETVTIDVMEEHQGGIMEN 145 (332)
T ss_dssp ---------------------------------------------------------EEEEEEEEEEEEEGGGHHHHHHH
T ss_pred ---------------------------------------------------------EECcEEEEEEEECHHHHHHHHHH
Confidence 47999999999999999999999
Q ss_pred hhccCeEEeccccCC-CcEEEEEEechhhhcCchHHHHhhcCCceEEEeEecccccC-CHHHHH
Q psy11896 958 VTKRHGILQGNEGKD-DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPA-LPEVQD 1019 (1043)
Q Consensus 958 l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~~~~f~~~~~~-~~~~~~ 1019 (1043)
|++|||+|.+++..+ +++.|+|++|++|+|||.++||+.|+|+|+|++.|+||+++ |+++++
T Consensus 146 L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~ 209 (332)
T 3e3x_A 146 IGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQ 209 (332)
T ss_dssp HHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSC
T ss_pred HHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCcccc
Confidence 999999999999875 68899999999999999999999999999999999999999 898754
No 14
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=6.4e-36 Score=350.71 Aligned_cols=278 Identities=19% Similarity=0.198 Sum_probs=200.3
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCc--------chHHHHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHV--------DFTVEVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~--------~~~~~~~~~~~ 72 (1043)
.+|+.++ |..++||+|...+.+.... ..+..||+|++.....+.+++.++.+|||||+. .+...+..+++
T Consensus 3 ~~~V~iv-G~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIV-GRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 4678888 9999999998666555443 257889999999999999999999999999996 57777888999
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
.+|++|+|+|++.+.+..+..+...+...++|+++|+||+|+..... .. ...+...+.++++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~---------~~---------~~~~~lg~~~~~~ 143 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA---------NI---------YDFYSLGFGEPYP 143 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--------------CC---------CSSGGGSSCCCEE
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh---------hH---------HHHHHcCCCCeEE
Confidence 99999999999999998888888888888999999999999864210 00 1112223346789
Q ss_pred eeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeee
Q psy11896 153 ISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEV 232 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v 232 (1043)
+||++|.|+++|++.+...+++..+ ....+...+|+++|++|+|||||+++|+......
T Consensus 144 iSA~~g~gv~~L~~~i~~~l~~~~~---------------~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~------ 202 (436)
T 2hjg_A 144 ISGTHGLGLGDLLDAVAEHFKNIPE---------------TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI------ 202 (436)
T ss_dssp CBTTTTBTHHHHHHHHHHTGGGCCS---------------SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEE------
T ss_pred EeCcCCCChHHHHHHHHHhcCcccc---------------ccccccCcEEEEEcCCCCCHHHHHHHHhCCCcee------
Confidence 9999999999999999877653110 0012345789999999999999999998432211
Q ss_pred cCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch----------HH-HHHHhHhcCeEEEEEeCC
Q psy11896 233 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT----------VE-VERALRVLDGAILVLCAV 301 (1043)
Q Consensus 233 ~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~----------~e-~~~~l~~~D~~ilVvda~ 301 (1043)
.+...|+|.+.....+.+++..++||||||+.++. .. ...+++.+|++++|+|+.
T Consensus 203 --------------~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~ 268 (436)
T 2hjg_A 203 --------------VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGE 268 (436)
T ss_dssp --------------EC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred --------------ecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCC
Confidence 22366788888888889999999999999985433 22 345788999999999999
Q ss_pred CCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 302 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 302 ~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++...++..++..+...++|+++|+||+|+..
T Consensus 269 ~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 269 EGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp TCCCHHHHHHHHHHHHTTCEEEEEEECGGGSC
T ss_pred cCCcHHHHHHHHHHHHcCCcEEEEEECccCCC
Confidence 99999999988888889999999999999874
No 15
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=2.9e-34 Score=338.61 Aligned_cols=277 Identities=19% Similarity=0.218 Sum_probs=205.3
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCC--------CcchHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPG--------HVDFTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG--------~~~~~~~~~~~~~~ 73 (1043)
.|+.|+ |.+++||+|...+.+.... .....||+|++.....+.+.+..+.+||||| +..+...+..+++.
T Consensus 24 ~~V~lv-G~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 24 PVVAIV-GRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CEEEEE-CSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CEEEEE-CCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 567777 9999999998766655444 2567899999999999999999999999999 55677888899999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++|||+|++.++...+..++.++...++|+++|+||+|+.... ... ...+...+..++++
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~-----~~~-------------~e~~~lg~~~~~~i 164 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR-----ANI-------------YDFYSLGFGEPYPI 164 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------------------CCSGGGSSSSEEEC
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh-----hhH-------------HHHHHcCCCceEEe
Confidence 999999999999999999999999988999999999999986321 111 11122334456899
Q ss_pred eecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeec
Q psy11896 154 SAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR 233 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~ 233 (1043)
||++|.|+++|++.+...++... .........+|+++|++|+|||||+++|+......
T Consensus 165 SA~~g~gv~~L~~~i~~~l~~~~---------------~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~------- 222 (456)
T 4dcu_A 165 SGTHGLGLGDLLDAVAEHFKNIP---------------ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI------- 222 (456)
T ss_dssp CTTTCTTHHHHHHHHHTTGGGSC---------------SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEE-------
T ss_pred ecccccchHHHHHHHHhhccccc---------------ccccccccceeEEecCCCCCHHHHHHHHhCCCccc-------
Confidence 99999999999999987654210 00112346789999999999999999997432211
Q ss_pred CCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC----------CCCchHH-HHHHhHhcCeEEEEEeCCC
Q psy11896 234 GKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG----------HVDFTVE-VERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 234 ~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG----------~~df~~e-~~~~l~~~D~~ilVvda~~ 302 (1043)
.+...|+|.+.....+.+++..++|||||| +..|... ...+++.+|++++|+|+.+
T Consensus 223 -------------~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~ 289 (456)
T 4dcu_A 223 -------------VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE 289 (456)
T ss_dssp -------------ECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT
T ss_pred -------------cCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence 223567888887888889999999999999 4455544 3457899999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 303 g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++..++..++.++...++|+++|+||+|+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 290 GIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD 320 (456)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEECGGGSC
T ss_pred CcCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 9999999999999999999999999999874
No 16
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=1.6e-33 Score=330.65 Aligned_cols=281 Identities=18% Similarity=0.198 Sum_probs=200.9
Q ss_pred cceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc---------hHHHHHHHhhh
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVEVERALRV 73 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~---------~~~~~~~~~~~ 73 (1043)
|+.|+ |.+.+||+|...+.+.+... .+..||+|++.....+.+++.++.+|||||+.. +...+..+++.
T Consensus 3 ~v~iv-G~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 3 TVLIV-GRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEE-CCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 56677 99999999997666655543 578999999999999999999999999999864 45677889999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHH-HHhhhhccccccccCCCCccceeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM-RQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
||++|+|+|++.+.+..+..+..++...++|+++|+||+|+.+. ..... .+ + +...+.++++
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~----~~~~~~~~-~------------~~lg~~~~~~ 144 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----FEREVKPE-L------------YSLGFGEPIP 144 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----HHHHTHHH-H------------GGGSSCSCEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc----cHHHHHHH-H------------HhcCCCCEEE
Confidence 99999999999999888888888888889999999999997421 01111 11 1 1122235689
Q ss_pred eeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeee
Q psy11896 153 ISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEV 232 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v 232 (1043)
+||++|.|+++|++.+...+++..+.. . .........+|+++|++|+|||||+++|+.....+
T Consensus 145 iSA~~g~gv~~L~~~i~~~l~~~~~~~--~---------~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~------ 207 (439)
T 1mky_A 145 VSAEHNINLDTMLETIIKKLEEKGLDL--E---------SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERAL------ 207 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHTTCCS--S---------SCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEE------
T ss_pred EeccCCCCHHHHHHHHHHhcccccccc--h---------hccccccCceEEEECCCCCCHHHHHHHHhCCcccc------
Confidence 999999999999999987765321000 0 00012235789999999999999999997432211
Q ss_pred cCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCchH------------HHHHHhHhcCeEEEEEeC
Q psy11896 233 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV------------EVERALRVLDGAILVLCA 300 (1043)
Q Consensus 233 ~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~~------------e~~~~l~~~D~~ilVvda 300 (1043)
.....|+|.+.....+.+++..+.+|||||+..+.. ....+++.+|++++|+|+
T Consensus 208 --------------v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~ 273 (439)
T 1mky_A 208 --------------VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDA 273 (439)
T ss_dssp --------------ECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEET
T ss_pred --------------cCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeC
Confidence 123557787777778889999999999999854332 235678899999999999
Q ss_pred CCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 301 VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 301 ~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
..+...+...++..+...++|+++|+||+|+..
T Consensus 274 ~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 274 TQGITRQDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp TTCCCHHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 999988888888888888999999999999864
No 17
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=3.3e-33 Score=335.55 Aligned_cols=329 Identities=22% Similarity=0.250 Sum_probs=239.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe--------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-------------- 264 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-------------- 264 (1043)
.++|+++||+|||||||+++|+........ .+|+|.......+.|
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e---------------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~ 63 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE---------------------AGGITQHIGATEIPMDVIEGICGDFLKKF 63 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC-------------------------CCCBTTEEEEEHHHHHHHSCGGGGGC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCcccc---------------------CCceecccCeEEEeechhhhhcccccccc
Confidence 468999999999999999999843211100 123443333332322
Q ss_pred ----cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHH
Q psy11896 265 ----KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVI 340 (1043)
Q Consensus 265 ----~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~ 340 (1043)
+...++|||||||.+|...+.++++.+|++|+|+|+.+|+++||...|..+...++|+++|+||||+.....
T Consensus 64 ~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~---- 139 (594)
T 1g7s_A 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWR---- 139 (594)
T ss_dssp GGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCC----
T ss_pred ccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccc----
Confidence 223599999999999999999999999999999999999999999999999999999999999999863110
Q ss_pred HHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHH
Q psy11896 341 NQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEM 420 (1043)
Q Consensus 341 ~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~ 420 (1043)
...+ .++++.........+..+.+.+.+.++.|++.
T Consensus 140 ---------------------------------------~~~~-----~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~ 175 (594)
T 1g7s_A 140 ---------------------------------------VHEG-----RPFMETFSKQDIQVQQKLDTKVYELVGKLHEE 175 (594)
T ss_dssp ---------------------------------------CCTT-----CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------------------cccC-----CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 0000 01111111122344555666666656666666
Q ss_pred HhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCC
Q psy11896 421 FLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKH 500 (1043)
Q Consensus 421 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1043)
+++..... .++ ..+..+|++++||++|.|++.|+++|..++|+|.... +.++ +++
T Consensus 176 gl~~e~~~------~l~---~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~--------------l~~~--~~~ 230 (594)
T 1g7s_A 176 GFESERFD------RVT---DFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQ--------------LKIE--EDS 230 (594)
T ss_dssp TCEEEEGG------GCS---CTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGG--------------GEEC--TTS
T ss_pred CcchHHHH------HHH---hccCcceEEEEeccCCCCchhHHHHHHhhccccchhh--------------hccc--cCC
Confidence 65431100 000 1246789999999999999999999999988664311 0112 678
Q ss_pred CcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEE--EeceEEEec--------cCCeeecCeec--CCCEE
Q psy11896 501 PFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKV--RVSRLVRLH--------SNEMEDVEEVL--AGDIF 567 (1043)
Q Consensus 501 p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~--ki~~l~~~~--------g~~~~~v~~a~--aGdIv 567 (1043)
|+.++|++++.+++ |+++++||++|+|++||.|++.+.+..+ +|.+|+.+. +.+..++++|. +|+++
T Consensus 231 p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v 310 (594)
T 1g7s_A 231 PARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKI 310 (594)
T ss_dssp BCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEE
T ss_pred CceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEE
Confidence 99999999999998 9999999999999999999998877644 999999873 66788999998 99999
Q ss_pred EEccC-ccccCcEEecCCCCcc--------cccCCCCCCceEEEEEEeCCCccHHHHHHHHHHH
Q psy11896 568 ALFGV-DCASGDTFVTDKNNSI--------SLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRF 622 (1043)
Q Consensus 568 ~i~gl-~~~~Gdtl~~~~~~~~--------~~~~~~~~~pv~~~~iep~~~~d~~kl~~~L~~l 622 (1043)
++.|| ++.+||||+. ..++. .+..+.+..+.+.+.|.+......+.|.++|+++
T Consensus 311 ~~~~l~~~~~Gd~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 311 VAPGIDDVMAGSPLRV-VTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp ECSSCTTBCTTCEEEE-CSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred EEcccCCCCCCCEEEe-cCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 99999 7899999983 32221 1223334456677788888888888888888886
No 18
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.2e-31 Score=311.31 Aligned_cols=280 Identities=22% Similarity=0.298 Sum_probs=218.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
+....+||+++||+|+|||||+++|++..+.+.... ...+...+++++|..+.|+++|+|++.....+.+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345578999999999999999999998877765422 1112234567899999999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcc-------hHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-------SQTLTVNRQMKRYDVP-CIAFINKLDRLGADP 336 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~ 336 (1043)
+++.++|||||||.+|...+..+++.+|++|+|+|+.+|.. .||++++..+...++| +++|+||||+...++
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 99999999999999999999999999999999999999986 7999999999999999 899999999975443
Q ss_pred H-HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCCh
Q psy11896 337 Y-RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDE 415 (1043)
Q Consensus 337 ~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd 415 (1043)
. +..+.+.+.+.
T Consensus 173 ~~~~~~~i~~~~~------------------------------------------------------------------- 185 (439)
T 3j2k_7 173 SNERYEECKEKLV------------------------------------------------------------------- 185 (439)
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 2 11121111000
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHH-----------HHHHhCCCCCCCCccccccC
Q psy11896 416 ILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLD-----------AVLDYLPNPGEVTNYAIENG 484 (1043)
Q Consensus 416 ~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld-----------~i~~~lPsp~~~~~~~~~~~ 484 (1043)
.++....+ .....+|++.+||++|.|++++++ .+.+.+|.|..
T Consensus 186 ----~~l~~~g~-------------~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~--------- 239 (439)
T 3j2k_7 186 ----PFLKKVGF-------------NPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNR--------- 239 (439)
T ss_pred ----HHHHHhcc-------------cccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCcc---------
Confidence 01100000 001246899999999999998433 23344665532
Q ss_pred cccceeeeCCCCCCCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCC
Q psy11896 485 QEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAG 564 (1043)
Q Consensus 485 ~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aG 564 (1043)
..++|+.+.|..++.+ .|++..|||.+|+|++||.|.+.+.+.+.+|.+|+. ...++++|.||
T Consensus 240 ------------~~~~p~r~~v~~~~~~-~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~----~~~~~~~a~aG 302 (439)
T 3j2k_7 240 ------------SVDGPIRLPIVDKYKD-MGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS----DDTETDFVAPG 302 (439)
T ss_pred ------------CCCCCeEEEEEEEEcC-CCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE----CCeEcCEecCC
Confidence 1578999999888763 499999999999999999999999898999999873 56789999999
Q ss_pred CEEE--EccC---ccccCcEEecCCC
Q psy11896 565 DIFA--LFGV---DCASGDTFVTDKN 585 (1043)
Q Consensus 565 dIv~--i~gl---~~~~Gdtl~~~~~ 585 (1043)
|.|+ +.|+ ++..|++|+ +++
T Consensus 303 ~~v~~~l~gi~~~~i~rG~vl~-~~~ 327 (439)
T 3j2k_7 303 ENLKIRLKGIEEEEILPGFILC-DPS 327 (439)
T ss_pred CcceEEEeccchhhcCCcEEec-CCC
Confidence 9999 6777 678899999 443
No 19
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.97 E-value=1.1e-30 Score=303.29 Aligned_cols=268 Identities=27% Similarity=0.381 Sum_probs=210.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++||+|+|||||+++|+..... .+... .......+|..+.|+.+|+|++.....+.++++.++|||||||
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~~-~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAA---ENPNV-EVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHH---SCTTS-CCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhh---cCccc-cccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 4689999999999999999999853110 00000 0001125788899999999999988888888999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeee
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~ 356 (1043)
.+|...+.++++.+|++|+|+|+.+|...|+.+++..+...++| +++|+||+|+.. +. +.++.+.+.
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~-~~~~~~~~~---------- 153 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DP-ELLDLVEME---------- 153 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CH-HHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cH-HHHHHHHHH----------
Confidence 99999999999999999999999999999999999999999999 789999999874 21 111111110
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
+. .++.
T Consensus 154 -------------------------------------------------~~------------~~l~------------- 159 (405)
T 2c78_A 154 -------------------------------------------------VR------------DLLN------------- 159 (405)
T ss_dssp -------------------------------------------------HH------------HHHH-------------
T ss_pred -------------------------------------------------HH------------HHHH-------------
Confidence 00 0000
Q ss_pred HHhhhcCccEEEEEeeccCCCC------------------HHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCC
Q psy11896 437 RRSTLTRKFTPVLVGTALKNKG------------------VQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDG 498 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~gSa~~~~G------------------v~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (1043)
+.-......|++.+||++|.| +..|+++|.+++|.|... .
T Consensus 160 -~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~---------------------~ 217 (405)
T 2c78_A 160 -QYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRD---------------------V 217 (405)
T ss_dssp -HTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCC---------------------C
T ss_pred -HhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCC---------------------C
Confidence 000011235888899999987 899999999999988531 5
Q ss_pred CCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCC---cEEEeceEEEeccCCeeecCeecCCCEEEEc--cC
Q psy11896 499 KHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV 572 (1043)
Q Consensus 499 ~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~---~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl 572 (1043)
++|+.+.|.+++.+++ |+++++||++|+|++||.|.+.+.+ ...+|.+|... ..++++|.|||++++. |+
T Consensus 218 ~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~ 293 (405)
T 2c78_A 218 DKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGV 293 (405)
T ss_dssp SSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET----TEEESEEETTCEEEEEESSC
T ss_pred CCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC----CcccCEEcCCCEEEEEECCC
Confidence 7899999999999887 9999999999999999999988776 57899998632 3689999999999865 65
Q ss_pred ---ccccCcEEe
Q psy11896 573 ---DCASGDTFV 581 (1043)
Q Consensus 573 ---~~~~Gdtl~ 581 (1043)
++..||+|+
T Consensus 294 ~~~~i~~G~~l~ 305 (405)
T 2c78_A 294 SREEVERGQVLA 305 (405)
T ss_dssp CTTTCCTTCEEE
T ss_pred cHhhcCceEEEE
Confidence 678999999
No 20
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.97 E-value=1.4e-30 Score=304.75 Aligned_cols=274 Identities=24% Similarity=0.279 Sum_probs=201.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeee--e-----ec---CCccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMH--E-----VR---GKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~--~-----v~---~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
...+||+++||+|+|||||+++|++..+.+.... . .. +...+++++|+.+.|+++|+|++.....+.+++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 3568999999999999999999998765553211 0 00 001123568999999999999999998999999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH-H
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-Y 337 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~-~ 337 (1043)
+.++|||||||.+|...+..+++.+|++|+|+|+.+| +..||++++..+...++| +++|+||+|+...++ +
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999999 888999999999988985 889999999976432 1
Q ss_pred HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHH
Q psy11896 338 RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEIL 417 (1043)
Q Consensus 338 ~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l 417 (1043)
+.++.+.+.
T Consensus 164 ~~~~~~~~~----------------------------------------------------------------------- 172 (435)
T 1jny_A 164 KRYKEIVDQ----------------------------------------------------------------------- 172 (435)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111110
Q ss_pred HHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------HHHHHHHHhCCCCCCCCccccccCc
Q psy11896 418 GEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLDYLPNPGEVTNYAIENGQ 485 (1043)
Q Consensus 418 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------~Lld~i~~~lPsp~~~~~~~~~~~~ 485 (1043)
+...+...-....-+|++.+||++|.|+. .|+++|.. +|.|...
T Consensus 173 --------------i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~--------- 228 (435)
T 1jny_A 173 --------------VSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKP--------- 228 (435)
T ss_dssp --------------HHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCG---------
T ss_pred --------------HHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCC---------
Confidence 00000000001113588999999999986 68888765 4445321
Q ss_pred ccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCC
Q psy11896 486 EDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAG 564 (1043)
Q Consensus 486 ~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aG 564 (1043)
.+.|+.+.|..++..++ |+++++||++|+|++||.|++.+.+...+|.+|+. ...++++|.||
T Consensus 229 ------------~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~~~~~~~a~aG 292 (435)
T 1jny_A 229 ------------VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIET----HHTKMDKAEPG 292 (435)
T ss_dssp ------------GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEE----TTEEESEECTT
T ss_pred ------------CCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEE----CCcEEeEEcCC
Confidence 35677877888887777 99999999999999999999999889999999964 24789999999
Q ss_pred CEEEE--ccC---ccccCcEEe
Q psy11896 565 DIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 565 dIv~i--~gl---~~~~Gdtl~ 581 (1043)
|++++ .|+ ++.+||+|+
T Consensus 293 ~~v~~~l~g~~~~~i~~Gd~l~ 314 (435)
T 1jny_A 293 DNIGFNVRGVEKKDIKRGDVVG 314 (435)
T ss_dssp CEEEEEEESSCGGGCCTTCEEE
T ss_pred CEEEEEEecCCHHHcCCccEec
Confidence 99987 454 788999999
No 21
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.97 E-value=8.6e-31 Score=303.16 Aligned_cols=266 Identities=27% Similarity=0.337 Sum_probs=208.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..||+++||+|+|||||+++|+...... +.. .....+.+|..+.|+++|+|+......+.++++.++|||||||.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~---g~~--~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEG---GGA--KFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHT---TSB--CCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhc---Ccc--ccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 3689999999999999999998542110 000 00001246777889999999999888888889999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
+|...+..+++.+|++|+|+|+.+|...||.++|..+...++| +++|+||+|+.. +. +.++.+.+
T Consensus 78 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~-~~~~~~~~------------ 143 (397)
T 1d2e_A 78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DS-EMVELVEL------------ 143 (397)
T ss_dssp HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CH-HHHHHHHH------------
T ss_pred HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CH-HHHHHHHH------------
Confidence 9999999999999999999999999999999999999999999 579999999874 21 11111110
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
+ +...+.
T Consensus 144 -----------------------------------------------~--------------------------~~~~l~ 150 (397)
T 1d2e_A 144 -----------------------------------------------E--------------------------IRELLT 150 (397)
T ss_dssp -----------------------------------------------H--------------------------HHHHHH
T ss_pred -----------------------------------------------H--------------------------HHHHHH
Confidence 0 000000
Q ss_pred HhhhcCccEEEEEeeccCCC---------C-HHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 438 RSTLTRKFTPVLVGTALKNK---------G-VQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~---------G-v~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
+.-.....+|++.+||++|. | +..|+++|.+++|.|... .++|+.+.|+
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~---------------------~~~p~~~~v~ 209 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRD---------------------LEKPFLLPVE 209 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCC---------------------TTSCCEEECC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCC---------------------CCCcEEEEEE
Confidence 00011123689999999976 4 899999999999988532 5789999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecCCC--cEEEeceEEEeccCCeeecCeecCCCEEEEc--cC---ccccCcE
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV---DCASGDT 579 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~--~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl---~~~~Gdt 579 (1043)
+++.+++ |+++++||++|+|++||.|.+.+.+ .+.+|.+|... ..++++|.|||++++. |+ ++..||+
T Consensus 210 ~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~ 285 (397)
T 1d2e_A 210 SVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLV 285 (397)
T ss_dssp EEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCE
T ss_pred EEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeE
Confidence 9999988 9999999999999999999987654 67789888643 3678999999999865 66 6789999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 286 l~ 287 (397)
T 1d2e_A 286 MA 287 (397)
T ss_dssp EE
T ss_pred Ee
Confidence 99
No 22
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1e-30 Score=315.37 Aligned_cols=276 Identities=22% Similarity=0.287 Sum_probs=180.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeee-------e---ecCCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH-------E---VRGKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~-------~---v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
....++||+++||+|+|||||+++|++..+.+.... . ..+...+.+++|..+.|+++|+|++.....+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 345689999999999999999999997766554320 0 011223466899999999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-------chHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP 336 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-------~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~ 336 (1043)
+++.++|||||||.+|...+..+++.+|++|+|||+.+|. ..||..++..+...++| +|+|+||||+...+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 9999999999999999999999999999999999999854 89999999999999998 888999999876443
Q ss_pred HH---HHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC
Q psy11896 337 YR---VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 413 (1043)
Q Consensus 337 ~~---~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~ 413 (1043)
.. ..+++.+.+.
T Consensus 333 ~~~~~i~~el~~~l~----------------------------------------------------------------- 347 (592)
T 3mca_A 333 DRFQEIKNIVSDFLI----------------------------------------------------------------- 347 (592)
T ss_dssp HHHHHHHHHHHHHHT-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 11 1122211110
Q ss_pred ChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH--------------HHHHHHHHhCCCCCCCCcc
Q psy11896 414 DEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ--------------TLLDAVLDYLPNPGEVTNY 479 (1043)
Q Consensus 414 dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~--------------~Lld~i~~~lPsp~~~~~~ 479 (1043)
.... ....-+|++.+||++|.|+. .|++.|.+++| |..
T Consensus 348 ---------~~~g--------------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~---- 399 (592)
T 3mca_A 348 ---------KMVG--------------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEK---- 399 (592)
T ss_dssp ---------TTSC--------------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSC----
T ss_pred ---------HhhC--------------CCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccc----
Confidence 0000 01123689999999999998 89999999887 321
Q ss_pred ccccCcccceeeeCCCCCCCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecC
Q psy11896 480 AIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVE 559 (1043)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~ 559 (1043)
..++|+.+.|..++.+..|++..|||.+|+|++||.|.+.+.+...+|.+|.. ...+++
T Consensus 400 -----------------~~~~p~r~~v~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~----~~~~~~ 458 (592)
T 3mca_A 400 -----------------PYRKPLRLSIDDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIR----NSDPSS 458 (592)
T ss_dssp -----------------TTTSCCEEEEEEEEEETTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEEC----SSSCSC
T ss_pred -----------------cccccchheeeEEEecCCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEE----cCccCc
Confidence 15789999999999883399999999999999999999999888899999983 456899
Q ss_pred -eecCCCEEE--EccC---ccccCcEEecCCC
Q psy11896 560 -EVLAGDIFA--LFGV---DCASGDTFVTDKN 585 (1043)
Q Consensus 560 -~a~aGdIv~--i~gl---~~~~Gdtl~~~~~ 585 (1043)
+|.|||+|+ +.|+ ++..|++|+ +++
T Consensus 459 ~~a~aG~~v~~~l~~i~~~~i~rG~vl~-~~~ 489 (592)
T 3mca_A 459 TWAVAGDTVTLQLADIEVNQLRPGDILS-NYE 489 (592)
T ss_dssp CEEETTCEEEEEESSSCGGGCCTTCEEE-CSS
T ss_pred ceecCCCEEEEEEccccccccceEEEec-cCC
Confidence 999999998 4676 678999999 443
No 23
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.96 E-value=1.2e-29 Score=289.17 Aligned_cols=239 Identities=14% Similarity=0.093 Sum_probs=192.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
+||+++||+|+|||||+++|+ ++|+|++.....+.++++.++|||||||.+
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~-----------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG-----------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS-----------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHH-----------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 389999999999999999995 567888888888999999999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEe-ccCCCCCCH-HHHHHHHHHHhCCCceeeee
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFIN-KLDRLGADP-YRVINQMRQKVGHNAAFLQI 356 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviN-KiD~~~~~~-~~~~~~i~~~l~~~~~~~~~ 356 (1043)
|...+.++++.+|++|+|+| .+|...||++++..+...++|. ++++| |||+ ..+. ++..+++.+.++
T Consensus 73 f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~-------- 142 (370)
T 2elf_A 73 TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITS-------- 142 (370)
T ss_dssp CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHH--------
Confidence 99999999999999999999 9999999999999999999998 99999 9998 3221 111222222111
Q ss_pred ccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHH
Q psy11896 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI 436 (1043)
Q Consensus 357 p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l 436 (1043)
..
T Consensus 143 -------------------------------------------------------------------~~----------- 144 (370)
T 2elf_A 143 -------------------------------------------------------------------GT----------- 144 (370)
T ss_dssp -------------------------------------------------------------------TS-----------
T ss_pred -------------------------------------------------------------------hc-----------
Confidence 10
Q ss_pred HHhhhcCccEEEEE--eeccC---CCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeee
Q psy11896 437 RRSTLTRKFTPVLV--GTALK---NKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA 511 (1043)
Q Consensus 437 ~~~~~~~~~~Pv~~--gSa~~---~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~ 511 (1043)
....+|+++ +||++ |.|+++|++.|.+++|+|.... . +. ...|+..+|..++.
T Consensus 145 -----~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~--~-------------~~--~~~p~r~~v~~vf~ 202 (370)
T 2elf_A 145 -----VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAEN--A-------------EL--NSLPARIFIDHAFN 202 (370)
T ss_dssp -----TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHH--H-------------HG--GGSCCEEEEEEEEC
T ss_pred -----CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCC--c-------------cc--ccccccccceeEEE
Confidence 012369999 99999 9999999999999998761100 0 00 13455555666666
Q ss_pred cCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc--cC---ccccCcEEe
Q psy11896 512 GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV---DCASGDTFV 581 (1043)
Q Consensus 512 d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl---~~~~Gdtl~ 581 (1043)
.++ |+++++||++|++++||+|++.+.+...+|.+|.. + .+++++|.|||++++. |+ ++.+||+|+
T Consensus 203 ~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~---~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~ 274 (370)
T 2elf_A 203 VTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQS-H---DVDIDSAPAGTRVGMRLKNVQAKDIERGFIIS 274 (370)
T ss_dssp CC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEE-T---TEEESEEETTCEEEEEEESCCGGGCCTTCEEE
T ss_pred cCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEE-C---CCCccEEcCCCcceEEEeccCHHHcCCceEEE
Confidence 666 99999999999999999999999899999999963 3 3789999999999876 55 678999999
No 24
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.96 E-value=2.4e-29 Score=296.40 Aligned_cols=276 Identities=20% Similarity=0.261 Sum_probs=179.9
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeee----------eecCCccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMH----------EVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~----------~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
....||+++||+|+|||||+++|++.++.+.... ....+..++..+|..+.|+++|+|++.....+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 3568999999999999999999998776653210 000112345678999999999999999988899999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcc-------hHHHHHHHHHHhcCCC-eEEEEeccCCCCCCH-H
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-------SQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-Y 337 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~-~ 337 (1043)
+.++|||||||.+|...+.++++.+|++|+|+|+.+|.. .||++++..+...++| +++|+||||+...++ .
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999873 7999999999999998 899999999975432 1
Q ss_pred HHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHH
Q psy11896 338 RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEIL 417 (1043)
Q Consensus 338 ~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l 417 (1043)
+.++.+.+.+ .+.
T Consensus 201 ~~~~~i~~e~-----------------------------------------------------------~~~-------- 213 (467)
T 1r5b_A 201 ERYKECVDKL-----------------------------------------------------------SMF-------- 213 (467)
T ss_dssp HHHHHHHHHH-----------------------------------------------------------HHH--------
T ss_pred HHHHHHHHHH-----------------------------------------------------------HHH--------
Confidence 1111111100 000
Q ss_pred HHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH--------------HHHHHHHhCCCCCCCCcccccc
Q psy11896 418 GEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT--------------LLDAVLDYLPNPGEVTNYAIEN 483 (1043)
Q Consensus 418 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~--------------Lld~i~~~lPsp~~~~~~~~~~ 483 (1043)
+..++ .+.. ..-+|++.+||++|.|+.. |++.| +.+|.|...
T Consensus 214 l~~~~---g~~~-------------~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~~------- 269 (467)
T 1r5b_A 214 LRRVA---GYNS-------------KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLERK------- 269 (467)
T ss_dssp HHHHH---CCCH-------------HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHHH-------
T ss_pred HHHhc---CCCc-------------cCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcCC-------
Confidence 00000 0000 1136889999999999875 45554 446655321
Q ss_pred CcccceeeeCCCCCCCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecC
Q psy11896 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLA 563 (1043)
Q Consensus 484 ~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~a 563 (1043)
.++|+.+.|..++.+ .|+++.|||.+|+|++||.|.+.+.+...+|.+|+.. ...++++|.|
T Consensus 270 --------------~~~p~~~~v~~~~~~-~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~~a~a 331 (467)
T 1r5b_A 270 --------------VNAPFIMPIASKYKD-LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE---ADEEISSSIC 331 (467)
T ss_dssp --------------HTSCCEEECCEEEES-SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT---TCCEESEEET
T ss_pred --------------CCCCcEEEEEEEEeC-CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc---CCcEeeEEcC
Confidence 467899999888764 5899999999999999999999888888899988732 2578999999
Q ss_pred CCEEEE--cc-C-ccccCcEEe
Q psy11896 564 GDIFAL--FG-V-DCASGDTFV 581 (1043)
Q Consensus 564 GdIv~i--~g-l-~~~~Gdtl~ 581 (1043)
||.+++ .| . ++..||+|+
T Consensus 332 G~~v~i~l~g~~~~i~rG~vl~ 353 (467)
T 1r5b_A 332 GDQVRLRVRGDDSDVQTGYVLT 353 (467)
T ss_dssp TCEEEEEEESCCTTCCTTCEEE
T ss_pred CCEEEEEEeccHhhCCceEEEe
Confidence 999987 55 4 788999999
No 25
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.96 E-value=3.9e-29 Score=309.18 Aligned_cols=268 Identities=25% Similarity=0.322 Sum_probs=197.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
....||+++||+|+|||||+++|+...... +.. .....+.+|..+.|+++|+|++.....+.++++.++||||||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~---G~a--~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPG 368 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKT---YGG--AARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPG 368 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHH---SCC-----------------------CCSCEEEECSSCEEEEEECCC
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccc---ccc--ccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCC
Confidence 446899999999999999999998542100 000 000012567888999999999999888888899999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHHHHhCCCceeee
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~ 355 (1043)
|.+|...+..+++.+|++|+|+|+.+|...||.+++..+...++| +++|+||||+.. +. +.++.+.+.
T Consensus 369 HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d~-e~le~i~eE--------- 437 (1289)
T 3avx_A 369 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD-DE-ELLELVEME--------- 437 (1289)
T ss_dssp HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-CH-HHHHHHHHH---------
T ss_pred hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-ch-hhHHHHHHH---------
Confidence 999999999999999999999999999999999999999999999 689999999974 21 111111110
Q ss_pred eccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHH
Q psy11896 356 IPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKA 435 (1043)
Q Consensus 356 ~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~ 435 (1043)
+ ..++
T Consensus 438 --------------------------------------------------i------------~elL------------- 442 (1289)
T 3avx_A 438 --------------------------------------------------V------------RELL------------- 442 (1289)
T ss_dssp --------------------------------------------------H------------HHHH-------------
T ss_pred --------------------------------------------------H------------HHHH-------------
Confidence 0 0000
Q ss_pred HHHhhhcCccEEEEEeeccCC--------CCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEE
Q psy11896 436 IRRSTLTRKFTPVLVGTALKN--------KGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAF 507 (1043)
Q Consensus 436 l~~~~~~~~~~Pv~~gSa~~~--------~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 507 (1043)
.+.-.....+|++.+||++| .|+..|+++|.+++|.|... .++|+.+.|.
T Consensus 443 -k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~---------------------~d~Pfr~pId 500 (1289)
T 3avx_A 443 -SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA---------------------IDKPFLLPIE 500 (1289)
T ss_dssp -HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCG---------------------GGSCCEEECC
T ss_pred -HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccc---------------------cccceeeecc
Confidence 00001122368999999999 57999999999999987532 5689999999
Q ss_pred eeeecCC-ccEEEEEEecCeecCCCEEEecCCC--cEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcE
Q psy11896 508 KLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDT 579 (1043)
Q Consensus 508 K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~--~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdt 579 (1043)
.++.+++ |+++++||++|+|++||.|.+.+.+ ...+|.+|.. ...++++|.|||++++ .|+ ++..||+
T Consensus 501 ~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~----~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdV 576 (1289)
T 3avx_A 501 DVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEM----FRKLLDEGRAGENVGVLLRGIKREEIERGQV 576 (1289)
T ss_dssp EEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEEC----SSCEESEEETTCEEEEEESSCCGGGCCTTCE
T ss_pred ccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEee----cCceeeEEecCCcceeEeeecchhcCCcccE
Confidence 9998887 9999999999999999999988766 6788999863 3467899999999986 466 6789999
Q ss_pred Ee
Q psy11896 580 FV 581 (1043)
Q Consensus 580 l~ 581 (1043)
|+
T Consensus 577 L~ 578 (1289)
T 3avx_A 577 LA 578 (1289)
T ss_dssp EE
T ss_pred Ee
Confidence 99
No 26
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.96 E-value=1.6e-28 Score=291.31 Aligned_cols=280 Identities=19% Similarity=0.254 Sum_probs=199.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeee---------e-ecCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMH---------E-VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~---------~-v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
...||+++|++|+|||||+++|++..+.+.... . ..+...+++++|....|+++|+|++.....+.++++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 357899999999999999999998866554310 0 112233466789999999999999999999999999
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHH
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRV 339 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~ 339 (1043)
.++|||||||.+|...+..+++.+|++|+|+|+.+| +..|+.+++..+...++| +++|+||+|+...+. ..
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~-~~ 190 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ-QR 190 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH-HH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH-HH
Confidence 999999999999999999999999999999999998 678999999999888865 899999999875332 11
Q ss_pred HHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHH
Q psy11896 340 INQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGE 419 (1043)
Q Consensus 340 ~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~ 419 (1043)
++++.+.+
T Consensus 191 ~~~i~~~~------------------------------------------------------------------------ 198 (483)
T 3p26_A 191 FEEIKSKL------------------------------------------------------------------------ 198 (483)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111100
Q ss_pred HHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------------HHHHHHHhCCC--CCCCCcc
Q psy11896 420 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------------LLDAVLDYLPN--PGEVTNY 479 (1043)
Q Consensus 420 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------------Lld~i~~~lPs--p~~~~~~ 479 (1043)
...+.+.-.....+|++.+||++|.|+++ +|+.+...+|. |..
T Consensus 199 -------------~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~---- 261 (483)
T 3p26_A 199 -------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGI---- 261 (483)
T ss_dssp -------------HHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTC----
T ss_pred -------------HHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccc----
Confidence 00001111112247899999999999863 45555545554 321
Q ss_pred ccccCcccceeeeCCCCCCCCCcEEEEEeeeecC----CccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEec----
Q psy11896 480 AIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK----FGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLH---- 551 (1043)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~----~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~---- 551 (1043)
..+.|+.+.|..++..+ .|++..|||.+|+|++||.|.+.+.+.+.+|.+|....
T Consensus 262 -----------------~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~ 324 (483)
T 3p26_A 262 -----------------NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQ 324 (483)
T ss_dssp -----------------CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC--
T ss_pred -----------------cCCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCcccc
Confidence 15789999999888765 38999999999999999999999999899999998653
Q ss_pred cCCeeecCeecCCCEEEE--ccC---ccccCcEEecCCC
Q psy11896 552 SNEMEDVEEVLAGDIFAL--FGV---DCASGDTFVTDKN 585 (1043)
Q Consensus 552 g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdtl~~~~~ 585 (1043)
|..+.++++|.|||+|++ .+. ++..||+|+ +++
T Consensus 325 ~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~-~~~ 362 (483)
T 3p26_A 325 STNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAA-SVD 362 (483)
T ss_dssp ---CCEESCEETTCEEEEEEESCCGGGCCTTCEEE-CTT
T ss_pred ccccccccEECCCCEEEEEEEecccccCCceEEEE-cCC
Confidence 445688999999999987 343 788999999 443
No 27
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.96 E-value=8.2e-29 Score=288.17 Aligned_cols=252 Identities=25% Similarity=0.321 Sum_probs=192.7
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----------
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---------- 265 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---------- 265 (1043)
....+||+++||+|+|||||+++|+.. ..|..+.|.++|+|+...+..+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~------------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~ 68 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV------------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYST 68 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC------------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEES
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC------------------ccccChhhhcCCcEEEEeeeeeecccccccccccc
Confidence 456789999999999999999999621 2455668889999998877665541
Q ss_pred -------------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEeccC
Q psy11896 266 -------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLD 330 (1043)
Q Consensus 266 -------------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKiD 330 (1043)
...++|||||||.+|...+.+++..+|++|+|+|+.+|. ..||.+++..+...++ |+++|+||+|
T Consensus 69 ~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~D 148 (410)
T 1kk1_A 69 SPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIE 148 (410)
T ss_dssp SSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGG
T ss_pred cccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECcc
Confidence 168999999999999999999999999999999999998 8999999988887776 6889999999
Q ss_pred CCCCCH-HHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHH
Q psy11896 331 RLGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEH 409 (1043)
Q Consensus 331 ~~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~ 409 (1043)
+...+. .+.++++.+
T Consensus 149 l~~~~~~~~~~~~i~~---------------------------------------------------------------- 164 (410)
T 1kk1_A 149 LVDKEKALENYRQIKE---------------------------------------------------------------- 164 (410)
T ss_dssp GSCHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 874221 011111111
Q ss_pred HhcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccce
Q psy11896 410 VAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKK 489 (1043)
Q Consensus 410 l~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~ 489 (1043)
|+.+. ....+|++.+||++|.|++.|+++|.+++|.|...
T Consensus 165 -----------~l~~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~------------- 204 (410)
T 1kk1_A 165 -----------FIEGT----------------VAENAPIIPISALHGANIDVLVKAIEDFIPTPKRD------------- 204 (410)
T ss_dssp -----------HHTTS----------------TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC-------------
T ss_pred -----------HHHhc----------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccc-------------
Confidence 11110 01236899999999999999999999999988532
Q ss_pred eeeCCCCCCCCCcEEEEEeeeec--------CC-ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceEE
Q psy11896 490 VVLNPSRDGKHPFIALAFKLEAG--------KF-GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRLV 548 (1043)
Q Consensus 490 ~~~~~~~~~~~p~~~~V~K~~~d--------~~-G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l~ 548 (1043)
.+.|+.+.|...+.. ++ |.++++||++|+|++||.|.+.+.++ ..+|.+|+
T Consensus 205 --------~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~ 276 (410)
T 1kk1_A 205 --------PNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ 276 (410)
T ss_dssp --------TTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred --------cCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEE
Confidence 467888888776643 33 88999999999999999999875432 34566665
Q ss_pred EeccCCeeecCeecCCCEEEEc-c----C---ccccCcEEe
Q psy11896 549 RLHSNEMEDVEEVLAGDIFALF-G----V---DCASGDTFV 581 (1043)
Q Consensus 549 ~~~g~~~~~v~~a~aGdIv~i~-g----l---~~~~Gdtl~ 581 (1043)
....++++|.|||++++. + + ++..|++|+
T Consensus 277 ----~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~ 313 (410)
T 1kk1_A 277 ----AGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG 313 (410)
T ss_dssp ----ETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEE
T ss_pred ----ECCeEecEEcCCCEEEEEEecCcccchhhccceeEEe
Confidence 235789999999988874 2 2 456799998
No 28
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.96 E-value=1.9e-28 Score=286.91 Aligned_cols=273 Identities=23% Similarity=0.270 Sum_probs=202.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceee------------eeecCCccccccccchhhhhhcCceEeeeeEEEEe
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEM------------HEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW 264 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~------------~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 264 (1043)
...++|+++||+|+|||||+++|++..+.+... +.......+...+|..+.|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999999776544221 11111112234578899999999999999999999
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQM 343 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i 343 (1043)
++..++|||||||.+|...+..+++.+|++|+|+|+.+|...||.+++..+...++| +++|+||+|+...+.+ .++.+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~-~~~~i 180 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDER-VFESI 180 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHH-HHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHH-HHHHH
Confidence 999999999999999999999999999999999999999999999999998888885 8899999999764421 11111
Q ss_pred HHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhc
Q psy11896 344 RQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423 (1043)
Q Consensus 344 ~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~ 423 (1043)
.+.+ ..+++
T Consensus 181 ~~~~-----------------------------------------------------------------------~~~~~ 189 (434)
T 1zun_B 181 KADY-----------------------------------------------------------------------LKFAE 189 (434)
T ss_dssp HHHH-----------------------------------------------------------------------HHHHH
T ss_pred HHHH-----------------------------------------------------------------------HHHHH
Confidence 1100 00000
Q ss_pred cCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH------------HHHHHHHhCCCCCCCCccccccCcccceee
Q psy11896 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDYLPNPGEVTNYAIENGQEDKKVV 491 (1043)
Q Consensus 424 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~------------Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~ 491 (1043)
... ......|++.+||++|.|++. |++. .+.+|.|...
T Consensus 190 ~~g--------------~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~-l~~i~~~~~~--------------- 239 (434)
T 1zun_B 190 GIA--------------FKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI-LETVEIASDR--------------- 239 (434)
T ss_dssp TTT--------------CCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH-HHHSCCTTCC---------------
T ss_pred HhC--------------CCccCceEEEEeccCCCCcccccccCccccCchHHHH-HhcCCCcccC---------------
Confidence 000 001236899999999999986 5553 4446655321
Q ss_pred eCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEc
Q psy11896 492 LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 570 (1043)
Q Consensus 492 ~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~ 570 (1043)
.+.|+.+.|..++...+ |+...|||.+|+|++||.|.+.+.+...+|.+|.... .++++|.||+++++.
T Consensus 240 ------~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~ 309 (434)
T 1zun_B 240 ------NYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTLT 309 (434)
T ss_dssp ------CSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEEE
T ss_pred ------CCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEEEEE
Confidence 46788888887766544 7788999999999999999999888889999998543 479999999999987
Q ss_pred cC---ccccCcEEe
Q psy11896 571 GV---DCASGDTFV 581 (1043)
Q Consensus 571 gl---~~~~Gdtl~ 581 (1043)
.. ++..||+|+
T Consensus 310 l~~~~~i~~G~~l~ 323 (434)
T 1zun_B 310 MEDEIDISRGDLLV 323 (434)
T ss_dssp ESSCCCCCTTCEEE
T ss_pred eCCccccCCccEEE
Confidence 64 578999999
No 29
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.96 E-value=1.4e-28 Score=289.08 Aligned_cols=273 Identities=23% Similarity=0.282 Sum_probs=209.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeee---------ee-cCCccccccccchhhhhhcCceEeeeeEEEEecCe
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMH---------EV-RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH 267 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~---------~v-~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 267 (1043)
...+|+++||+|+|||||+++|++..+.+.... +. .+...++.++|..+.|+++|+|++.....+.++++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 457899999999999999999997755443210 00 11123345678899999999999999999999999
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcch-------HHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHH
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS-------QTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRV 339 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~-------~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~ 339 (1043)
.++|||||||.+|...+..+++.+|++|+|+|+.+|... ||.+++..+...++| +++|+||+|+...+.+ .
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~-~ 164 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES-R 164 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH-H
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHH-H
Confidence 999999999999999999999999999999999998766 999999998889997 8899999998743321 1
Q ss_pred HHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHH
Q psy11896 340 INQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGE 419 (1043)
Q Consensus 340 ~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~ 419 (1043)
++.+.+.+
T Consensus 165 ~~~i~~~~------------------------------------------------------------------------ 172 (458)
T 1f60_A 165 FQEIVKET------------------------------------------------------------------------ 172 (458)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111100
Q ss_pred HHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHH------------------------HHHHHHHHhCCCCCC
Q psy11896 420 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------------------TLLDAVLDYLPNPGE 475 (1043)
Q Consensus 420 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~------------------------~Lld~i~~~lPsp~~ 475 (1043)
...+...-.....+|++.+||++|.|+. .|++++.. +|.|..
T Consensus 173 -------------~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~ 238 (458)
T 1f60_A 173 -------------SNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSR 238 (458)
T ss_dssp -------------HHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCC
T ss_pred -------------HHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcc
Confidence 0000000000012577888999998875 46777554 444421
Q ss_pred CCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCC
Q psy11896 476 VTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE 554 (1043)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~ 554 (1043)
..+.|+.+.|..++.+++ |+++.|||.+|+++.||.|.+.+.+...+|.+|.. .
T Consensus 239 ---------------------~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~ 293 (458)
T 1f60_A 239 ---------------------PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEM----H 293 (458)
T ss_dssp ---------------------CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEE----T
T ss_pred ---------------------cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEE----C
Confidence 157899999999999887 99999999999999999999998888899999973 2
Q ss_pred eeecCeecCCCEEEE--ccC---ccccCcEEec
Q psy11896 555 MEDVEEVLAGDIFAL--FGV---DCASGDTFVT 582 (1043)
Q Consensus 555 ~~~v~~a~aGdIv~i--~gl---~~~~Gdtl~~ 582 (1043)
..++++|.|||.+++ .|+ +++.|++|+.
T Consensus 294 ~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~~ 326 (458)
T 1f60_A 294 HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGD 326 (458)
T ss_dssp TEECSCBCTTCEEEEEESSCCTTTSCTTCEEEE
T ss_pred CeEEEEEcCCCEEEEEEcCCcccccCceeEEec
Confidence 467899999999886 466 6789999993
No 30
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-28 Score=294.90 Aligned_cols=286 Identities=19% Similarity=0.238 Sum_probs=215.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceee---------ee-ecCCccccccccchhhhhhcCceEeeeeEEEEecC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEM---------HE-VRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~---------~~-v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 266 (1043)
....+|+++||+|+|||||+++|++..+.+... .. ..+...+++++|..+.|+.+|+|++.....+.+++
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 345789999999999999999999876665431 00 11223346678999999999999999999999999
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-------cchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHH
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYR 338 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~ 338 (1043)
+.++|||||||.+|...+..+++.+|++|+|+|+.+| ...|+..++..+...++| +++|+||+|+...+. .
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~-~ 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ-Q 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH-H
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH-H
Confidence 9999999999999999999999999999999999987 578999999999988876 889999999975332 1
Q ss_pred HHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHH
Q psy11896 339 VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILG 418 (1043)
Q Consensus 339 ~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~ 418 (1043)
.++.+.+.+
T Consensus 324 ~~~ei~~~l----------------------------------------------------------------------- 332 (611)
T 3izq_1 324 RFEEIKSKL----------------------------------------------------------------------- 332 (611)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred HHHHHHHHH-----------------------------------------------------------------------
Confidence 111111100
Q ss_pred HHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHH---------------HHHHHHHhCCCCCCCCcccccc
Q psy11896 419 EMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT---------------LLDAVLDYLPNPGEVTNYAIEN 483 (1043)
Q Consensus 419 ~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~---------------Lld~i~~~lPsp~~~~~~~~~~ 483 (1043)
...+.+.-.....+|++.+||++|.|+.. |++.+....+.+....
T Consensus 333 --------------~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~------ 392 (611)
T 3izq_1 333 --------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKEN------ 392 (611)
T ss_dssp --------------HHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSS------
T ss_pred --------------HHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccC------
Confidence 00001101111246889999999999974 4444443322111000
Q ss_pred CcccceeeeCCCCCCCCCcEEEEEeeeecC---C-ccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEec----cCCe
Q psy11896 484 GQEDKKVVLNPSRDGKHPFIALAFKLEAGK---F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLH----SNEM 555 (1043)
Q Consensus 484 ~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~---~-G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~----g~~~ 555 (1043)
+.+..+.|+.+.|..++..+ + |++..|||.+|+|++||.|.+.+.+.+.+|.+|.... |..+
T Consensus 393 ----------p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~ 462 (611)
T 3izq_1 393 ----------EGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNH 462 (611)
T ss_dssp ----------SCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSC
T ss_pred ----------cccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccc
Confidence 01126789999998888875 3 8999999999999999999999999889999998552 5567
Q ss_pred eecCeecCCCEEEE--ccC---ccccCcEEecCCC
Q psy11896 556 EDVEEVLAGDIFAL--FGV---DCASGDTFVTDKN 585 (1043)
Q Consensus 556 ~~v~~a~aGdIv~i--~gl---~~~~Gdtl~~~~~ 585 (1043)
.++++|.|||+|++ .|+ ++..|++|+ +++
T Consensus 463 ~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~-~~~ 496 (611)
T 3izq_1 463 EETDVAIKGDFVTLKLRKAYPEDIQNGDLAA-SVD 496 (611)
T ss_dssp CCCCCEETTCEEEEEESSCCTTSCCTTCEEB-CST
T ss_pred cccceecCCCcceEEeeeccHhhCcceEEcc-CCC
Confidence 89999999999997 454 788999999 443
No 31
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.95 E-value=2.4e-27 Score=275.46 Aligned_cols=251 Identities=21% Similarity=0.264 Sum_probs=182.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe------------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW------------ 264 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~------------ 264 (1043)
+...||+++||+|+|||||+++|+.. ..|....|.++|+|+...+....+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~------------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~ 67 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV------------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTK 67 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC------------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESS
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC------------------ccccCcccccCCcEEEeccccccccccccccccccc
Confidence 34689999999999999999999621 245556788999999877654433
Q ss_pred ---c--------CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEeccCC
Q psy11896 265 ---K--------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDR 331 (1043)
Q Consensus 265 ---~--------~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKiD~ 331 (1043)
. .+.++|||||||.+|...+.+++..+|++|+|+|+.+|. ..||.+++..+...++ |+++|+||+|+
T Consensus 68 ~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 68 PRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDL 147 (408)
T ss_dssp SBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTS
T ss_pred ccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCC
Confidence 1 168999999999999999999999999999999999998 8999999988877776 68899999998
Q ss_pred CCCCH-HHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHH
Q psy11896 332 LGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHV 410 (1043)
Q Consensus 332 ~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l 410 (1043)
...+. .+.++++.+
T Consensus 148 ~~~~~~~~~~~~i~~----------------------------------------------------------------- 162 (408)
T 1s0u_A 148 VDEKQAEENYEQIKE----------------------------------------------------------------- 162 (408)
T ss_dssp SCTTTTTTHHHHHHH-----------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 75331 111111111
Q ss_pred hcCChHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCccccee
Q psy11896 411 AEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKV 490 (1043)
Q Consensus 411 ~e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~ 490 (1043)
++.+. ...-+|++.+||++|.|++.|+++|.+++|.|...
T Consensus 163 ----------~l~~~----------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~-------------- 202 (408)
T 1s0u_A 163 ----------FVKGT----------------IAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRD-------------- 202 (408)
T ss_dssp ----------HHTTS----------------TTTTCCEEEC------CHHHHHHHHHHHSCCCCCC--------------
T ss_pred ----------HHhhc----------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccc--------------
Confidence 11100 01235889999999999999999999999987421
Q ss_pred eeCCCCCCCCCcEEEEEeeeec--------CC-ccEEEEEEecCeecCCCEEEecCCC------------cEEEeceEEE
Q psy11896 491 VLNPSRDGKHPFIALAFKLEAG--------KF-GQLTYMRCYQGKLRKGEMIYNVRTD------------KKVRVSRLVR 549 (1043)
Q Consensus 491 ~~~~~~~~~~p~~~~V~K~~~d--------~~-G~i~~~RV~sGtl~~gd~v~~~~~~------------~~~ki~~l~~ 549 (1043)
.+.|+.+.|...+.. ++ |.++.+||.+|+|++||.|.+.+.+ ...+|.+|+.
T Consensus 203 -------~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~ 275 (408)
T 1s0u_A 203 -------PDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA 275 (408)
T ss_dssp -------TTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE
T ss_pred -------CCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEE
Confidence 567888888877643 22 7899999999999999999986532 2568888873
Q ss_pred eccCCeeecCeecCCCEEEEc-----cC---ccccCcEEe
Q psy11896 550 LHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFV 581 (1043)
Q Consensus 550 ~~g~~~~~v~~a~aGdIv~i~-----gl---~~~~Gdtl~ 581 (1043)
...++++|.|||.+++. ++ +...|++|+
T Consensus 276 ----~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~ 311 (408)
T 1s0u_A 276 ----GNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG 311 (408)
T ss_dssp ----TTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEE
T ss_pred ----CCEEcCEEeCCCeEEEEeccCcccchhhccceeEEE
Confidence 34689999999999983 23 556899998
No 32
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.95 E-value=4.7e-28 Score=285.98 Aligned_cols=258 Identities=24% Similarity=0.294 Sum_probs=189.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++||+|+|||||+++|+.... ...+|..+.|+++|+|++.....+.++++.++|||||||
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~--------------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIAS--------------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC----------------------------------CCCEEEETTEEEEECCCSSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCc--------------ccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 357899999999999999999973321 234677788999999999998889999999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
.+|...+..+++.+|++|+|+|+.+|+..||.+++..+...++|.++|+||+|+... +.++.+.+
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~---~~~~~~~~------------ 148 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT---EEIKRTEM------------ 148 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH---HHHHHHHH------------
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc---hhHHHHHH------------
Confidence 999999999999999999999999999999999999999999999999999998741 11111111
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
++. .++.
T Consensus 149 -----------------------------------------------~l~------------~~l~-------------- 155 (482)
T 1wb1_A 149 -----------------------------------------------IMK------------SILQ-------------- 155 (482)
T ss_dssp -----------------------------------------------HHH------------HHHH--------------
T ss_pred -----------------------------------------------HHH------------HHHh--------------
Confidence 000 0000
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
.. ......|++.+||++|.|++.|++.|.+.+|.|.... +.++|+.+.|..++..++ |.
T Consensus 156 ~~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~-------------------~~~~~~~~~v~~v~~~~g~G~ 215 (482)
T 1wb1_A 156 ST-HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIR-------------------NTESYFKMPLDHAFPIKGAGT 215 (482)
T ss_dssp HS-SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCC-------------------CSSSCCBCBCSCEECCSSCCC
T ss_pred hh-cccccceEEEEECcCCCCHHHHHHHHHHhhcCccccc-------------------cccccccccceeEEEecCCce
Confidence 00 0001358889999999999999999999887551100 145677777777777766 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---ccccCcEEe
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 581 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl---~~~~Gdtl~ 581 (1043)
++.+||.+|++++||.|...+.+...+|..|.. ...++++|.||+.+++ .|+ ++..||+|+
T Consensus 216 v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 216 VVTGTINKGIVKVGDELKVLPINMSTKVRSIQY----FKESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp EECCCCCBSCCCSSEEECCTTTCCCEEECCBCG----GGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEE----CCeEeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 999999999999999999988887788888872 3467899999999876 476 568899994
No 33
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.94 E-value=9.5e-29 Score=289.49 Aligned_cols=300 Identities=24% Similarity=0.272 Sum_probs=215.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+.++|+++||+|+|||||+++|+... +. ....+|+|++.....+.+++..++|||||||
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--------v~-------------~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGh 61 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--------VA-------------SGEAGGITQHIGAYHVETENGMITFLDTPGH 61 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--------HS-------------BTTBCCCCCCSSCCCCCTTSSCCCEECCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--------Cc-------------cccCCCeeEeEEEEEEEECCEEEEEEECCCc
Confidence 45789999999999999999997321 00 1224788888877778888899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
.+|...+.++++.+|++++|+|+.+|+.+||.+++..+...++|+++++||+|+..+++++..+ .+.
T Consensus 62 e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~----~l~--------- 128 (501)
T 1zo1_I 62 AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKN----ELS--------- 128 (501)
T ss_dssp TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTC----CCC---------
T ss_pred HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHH----HHH---------
Confidence 9999999999999999999999999999999999999999999999999999997654211000 000
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
+.. ++.+
T Consensus 129 ------------------------------------------------------~~~------~~~~------------- 135 (501)
T 1zo1_I 129 ------------------------------------------------------QYG------ILPE------------- 135 (501)
T ss_dssp ------------------------------------------------------CCC------CCTT-------------
T ss_pred ------------------------------------------------------Hhh------hhHH-------------
Confidence 000 0000
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
..+..+|++++||++|.|+++|+++|......+.. .. .++.|+.+.|++.+.+++ |.
T Consensus 136 ---~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~~-----------------~~--~~~~~~~~~V~e~~~d~g~G~ 193 (501)
T 1zo1_I 136 ---EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLEL-----------------KA--VRKGMASGAVIESFLDKGRGP 193 (501)
T ss_dssp ---CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCSTT-----------------TS--CCCSBCEEEEEEEEECSSSSE
T ss_pred ---HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhcc-----------------cc--ccccccccceEEEEEeCCcEE
Confidence 01123699999999999999999998764211100 01 167889999999999987 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-c-cccCcEEecCCCCcc------
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-D-CASGDTFVTDKNNSI------ 588 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~-~~~Gdtl~~~~~~~~------ 588 (1043)
++++||++|+|++||.+.+... ..+|..+. +.+..++++|.||+.+.+.|+ + ...||+++...+...
T Consensus 194 v~~~~V~~Gtlk~Gd~v~~g~~--~~kVr~i~---~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~ 268 (501)
T 1zo1_I 194 VATVLVREGTLHKGDIVLCGFE--YGRVRAMR---NELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVAL 268 (501)
T ss_dssp EEEEEEEESBCCTTCEEEEEBS--SCEEEEEC---CTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEECSSCTTBCSSC
T ss_pred EEEEEEEeeEEecCCEEEEccc--eeEEEEEE---ecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEecCCHHHHHHHHH
Confidence 9999999999999999987542 23444443 334456889999999998898 4 368999873111000
Q ss_pred -----------------cccCCC--C---CCceEEEEEEeCCCccHHHHHHHHHHHhcCCCeeEE
Q psy11896 589 -----------------SLESIY--V---ADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHF 631 (1043)
Q Consensus 589 -----------------~~~~~~--~---~~pv~~~~iep~~~~d~~kl~~~L~~l~~eDpsl~~ 631 (1043)
.+..+. + ..+.+.+.|.+......+.|.++|.+|..++..+.+
T Consensus 269 ~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v 333 (501)
T 1zo1_I 269 YRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKI 333 (501)
T ss_dssp BTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCC
T ss_pred HHHHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEE
Confidence 111110 1 233455666666666677777777777666655544
No 34
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.94 E-value=1.5e-26 Score=268.28 Aligned_cols=262 Identities=20% Similarity=0.212 Sum_probs=186.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE-----ecCeeEEEE
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL-----WKDHNINII 272 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-----~~~~~i~li 272 (1043)
...+|+++||+|+|||||+++|+....... .+.... +.......+..++++......... .....++||
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 80 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAET-----NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI 80 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEE-----EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc-cCcccc-----ceeeccccccccceecccccccccccccccccceEEEE
Confidence 356899999999999999999985322110 000000 000001112233333322111111 123789999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHHHHHHHHHhcCC-CeEEEEeccCCCCCCH-HHHHHHHHHHhCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKVGH 349 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~~~~~~~~~~~~-p~ivviNKiD~~~~~~-~~~~~~i~~~l~~ 349 (1043)
|||||.+|...+..+++.+|++++|+|+.+|. ..||.+++..+...+. |+++|+||+|+...+. .+..+++.+.+
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l-- 158 (403)
T 3sjy_A 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFT-- 158 (403)
T ss_dssp ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH--
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999998 9999999998888776 8999999999874221 11111111111
Q ss_pred CceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCH
Q psy11896 350 NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISE 429 (1043)
Q Consensus 350 ~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~ 429 (1043)
.+
T Consensus 159 -------------------------------------------------------------------------~~----- 160 (403)
T 3sjy_A 159 -------------------------------------------------------------------------KG----- 160 (403)
T ss_dssp -------------------------------------------------------------------------TT-----
T ss_pred -------------------------------------------------------------------------Hh-----
Confidence 00
Q ss_pred HHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEee
Q psy11896 430 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKL 509 (1043)
Q Consensus 430 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~ 509 (1043)
.....+|++.+||++|.|++.|+++|.+++|.|... .+.|+.+.|.+.
T Consensus 161 -----------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~---------------------~~~~~~~~v~~~ 208 (403)
T 3sjy_A 161 -----------TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRD---------------------LSQKPVMLVIRS 208 (403)
T ss_dssp -----------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC---------------------TTSCCEEEEEEE
T ss_pred -----------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCC---------------------CCCCcEEEEEEE
Confidence 011235899999999999999999999999887532 567889998877
Q ss_pred ee--------cCC-ccEEEEEEecCeecCCCEEEecCCCc------------EEEeceEEEeccCCeeecCeecCCCEEE
Q psy11896 510 EA--------GKF-GQLTYMRCYQGKLRKGEMIYNVRTDK------------KVRVSRLVRLHSNEMEDVEEVLAGDIFA 568 (1043)
Q Consensus 510 ~~--------d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~------------~~ki~~l~~~~g~~~~~v~~a~aGdIv~ 568 (1043)
+. +++ |.++++||.+|++++||+|.+.+.+. ..+|.+|.. ...++++|.|||+++
T Consensus 209 ~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~ 284 (403)
T 3sjy_A 209 FDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEAKPGGLVA 284 (403)
T ss_dssp ECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEE
T ss_pred EeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEEeCCCEEE
Confidence 64 233 89999999999999999999875443 468888873 467899999999999
Q ss_pred Ec-----cC---ccccCcEEe
Q psy11896 569 LF-----GV---DCASGDTFV 581 (1043)
Q Consensus 569 i~-----gl---~~~~Gdtl~ 581 (1043)
+. ++ |...|++|+
T Consensus 285 ~~l~~~~~~~~~d~~~G~vl~ 305 (403)
T 3sjy_A 285 IGTYLDPSLTKADNLLGSIIT 305 (403)
T ss_dssp EEESSCHHHHGGGTTTTCEEE
T ss_pred EEeccccccchhhhccccEEe
Confidence 83 33 567899998
No 35
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.93 E-value=1.1e-27 Score=282.74 Aligned_cols=249 Identities=25% Similarity=0.288 Sum_probs=194.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGH 277 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG~ 277 (1043)
.++|+++||+|+|||||+++|+... ......+|+|.+.....+.+ ++..++|||||||
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~---------------------~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh 62 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQ---------------------VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH 62 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHH---------------------HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---------------------cccccCCceeEEEeEEEEEeCCCCEEEEEECCCh
Confidence 3579999999999999999997321 11223567777776666666 5678999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHHHHHHHHHHHhCCCceeeeec
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~i~~~l~~~~~~~~~p 357 (1043)
.+|...+.++++.+|++|+|+|+.+|..+||..+|..+...++|+++|+||+|+..++.....+.+.+ ++
T Consensus 63 e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~-~~--------- 132 (537)
T 3izy_P 63 AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLA-YD--------- 132 (537)
T ss_dssp CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHH-TT---------
T ss_pred HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHh-hh---------
Confidence 99999999999999999999999999999999999999999999999999999875432111111000 00
Q ss_pred cccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCChHHHHHHhccCCCCHHHHHHHHH
Q psy11896 358 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437 (1043)
Q Consensus 358 ~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~dd~l~~~~l~~~~~~~~~l~~~l~ 437 (1043)
.+.+
T Consensus 133 --------------------------------------------------------------~~~e-------------- 136 (537)
T 3izy_P 133 --------------------------------------------------------------VVCE-------------- 136 (537)
T ss_dssp --------------------------------------------------------------SCCC--------------
T ss_pred --------------------------------------------------------------hhHH--------------
Confidence 0000
Q ss_pred HhhhcCccEEEEEeeccCCCCHHHHHHHHHHhCCCCCCCCccccccCcccceeeeCCCCCCCCCcEEEEEeeeecCC-cc
Q psy11896 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ 516 (1043)
Q Consensus 438 ~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~K~~~d~~-G~ 516 (1043)
..+..+|++.+||++|.|+++|+++|...++.+... . ++++|+.+.|++.+.+++ |+
T Consensus 137 ---~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~-----------------~--~~~~~~~~~V~e~~~~~g~G~ 194 (537)
T 3izy_P 137 ---DYGGDVQAVHVSALTGENMMALAEATIALAEMLELK-----------------A--DPTGAVEGTVIESFTDKGRGP 194 (537)
T ss_dssp ---CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCC-----------------C--CSSSSEEEEEEEECCCTTCCC
T ss_pred ---hcCCCceEEEEECCCCCCchhHHHHHHHhhhccccc-----------------C--CCCCCcceeEEEEEEeCCCce
Confidence 012346899999999999999999999887644211 1 167899999999999988 99
Q ss_pred EEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEEccC-cc-ccCcEEe
Q psy11896 517 LTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDTFV 581 (1043)
Q Consensus 517 i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~-~~Gdtl~ 581 (1043)
++.++|.+|+|++||.+... ....+|..|+...| .++++|.||++|+|.|+ +. ..||+|+
T Consensus 195 V~~g~V~~G~l~~Gd~v~~g--~~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~ 256 (537)
T 3izy_P 195 VTTAIIQRGTLRKGSILVAG--KSWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEIL 256 (537)
T ss_dssp CEEEEEEEECCSSEEEECCS--SCCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCC
T ss_pred EEEEEEecCEEEcCCEEEeC--CceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEE
Confidence 99999999999999998543 23457777764444 67899999999999999 43 7899998
No 36
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.89 E-value=1.1e-23 Score=256.71 Aligned_cols=110 Identities=47% Similarity=0.722 Sum_probs=105.7
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
++++|++++|+++|+|+......+.|++++|+|+|||||.||..++.++++.+|++|+|||+.+|+..|++.+|+++...
T Consensus 39 ~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~ 118 (638)
T 3j25_A 39 TTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 118 (638)
T ss_dssp CCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH
T ss_pred CcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 102 DVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 102 ~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
++|.++++||+|++..+....++++++.++
T Consensus 119 ~lp~i~~INKmDr~~a~~~~~~~~i~~~l~ 148 (638)
T 3j25_A 119 GIPTIFFINKIDQNGIDLSTVYQDIKEKLS 148 (638)
T ss_dssp TCSCEECCEECCSSSCCSHHHHHHHHHTTC
T ss_pred CCCeEEEEeccccccCCHHHHHHHHHHHhC
Confidence 999999999999999999888999988775
No 37
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.89 E-value=6.8e-21 Score=235.44 Aligned_cols=111 Identities=53% Similarity=0.886 Sum_probs=87.9
Q ss_pred cccCCChhhhhhcCCccccceEEEEec-------CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHH
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWK-------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 94 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~-------~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~ 94 (1043)
++++|+.++|+++|+|+......+.|. ++.++|||||||.||..++.++++.+|++|+|||+.+|++.|++.+
T Consensus 50 ~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v 129 (709)
T 4fn5_A 50 AATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV 129 (709)
T ss_dssp ------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH
T ss_pred CccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH
Confidence 568999999999999999999999885 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 95 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 95 ~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
|+++.+.++|.++++||+|+...+....+++++..++.
T Consensus 130 ~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 130 WRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp HHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999887754
No 38
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.87 E-value=1.3e-19 Score=222.97 Aligned_cols=129 Identities=53% Similarity=0.857 Sum_probs=113.9
Q ss_pred ccceeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecC-------eeEEEEeC
Q psy11896 3 HKVKIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKD-------HNINIIDT 57 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~-------~~i~liDT 57 (1043)
+++.|+ |..++||||... .+++|+.+.|+++|+|+......+.+++ +.++||||
T Consensus 11 ~~I~Ii-G~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 11 RNIGIS-AHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 466677 999999999721 2567888999999999999988888887 89999999
Q ss_pred CCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 58 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 58 PG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
|||.+|...+..+++.+|++|+|+|++++...++..+|+.+...++|+++|+||+|+...+..+.++++++.++.
T Consensus 90 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~ 164 (704)
T 2rdo_7 90 PGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGA 164 (704)
T ss_pred CCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999988889999999999999887887888888776543
No 39
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.86 E-value=1.7e-20 Score=230.55 Aligned_cols=127 Identities=52% Similarity=0.796 Sum_probs=98.5
Q ss_pred ccceeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH
Q psy11896 3 HKVKIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 64 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 64 (1043)
+++.|+ |..++||||... .+++|+.+.|+++|+|+......+.++++.++|||||||.+|.
T Consensus 13 ~~I~Iv-G~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 91 (691)
T 1dar_A 13 RNIGIA-AHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT 91 (691)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH
Confidence 466677 999999999832 2457888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhh
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKT 130 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~ 130 (1043)
..+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+.++++++.+
T Consensus 92 ~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l 157 (691)
T 1dar_A 92 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL 157 (691)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988999999999999998878777777777655
No 40
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.84 E-value=6.5e-20 Score=225.41 Aligned_cols=150 Identities=43% Similarity=0.624 Sum_probs=111.1
Q ss_pred ccceeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH
Q psy11896 3 HKVKIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 64 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 64 (1043)
+++.|+ |..++||+|... .+++|+.+.|+++|+|+......+.+++++++|||||||.+|.
T Consensus 11 ~~I~Iv-G~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 89 (693)
T 2xex_A 11 RNIGIM-AHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT 89 (693)
T ss_dssp EEEEEE-CCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH
Confidence 456666 999999998721 1456888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 65 ~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+..+++.+|++|+|+|++.+...++..+|..+...++|+++|+||+|+...+..+.++.+++.++.
T Consensus 90 ~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~------------ 157 (693)
T 2xex_A 90 VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQA------------ 157 (693)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCC------------
Confidence 99999999999999999999999999999999998899999999999999887777777777776531
Q ss_pred ccceeeeeeeecccCCcchHHHH
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTER 167 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~ 167 (1043)
......+|+|+ +.|++.+.+.
T Consensus 158 ~~~~~~ipisa--~~~~~~l~d~ 178 (693)
T 2xex_A 158 NAAPIQLPIGA--EDEFEAIIDL 178 (693)
T ss_dssp CEEESEEEECC--GGGCCEEEET
T ss_pred CceeEEeeccc--CCCcceeeee
Confidence 12234678887 6666655443
No 41
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.82 E-value=3.3e-19 Score=218.37 Aligned_cols=126 Identities=22% Similarity=0.342 Sum_probs=110.4
Q ss_pred cceeeeeecccccccCCc------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH
Q psy11896 4 KVKIIHIKQEQVRGKDNV------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~ 65 (1043)
++.|+ |..++||||... .++.|+.+.|+++|+|+......+.+.++.++|||||||.+|..
T Consensus 11 ~i~Ii-G~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~ 89 (665)
T 2dy1_A 11 TVALV-GHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 89 (665)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHH
Confidence 45555 999999998721 24567888899999999999999999999999999999999999
Q ss_pred HHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 66 ~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
.+..+++.+|++++|+|+++++..++..+++.+...++|+++|+||+|+. ....+..+++.+.++
T Consensus 90 ~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 90 EIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG 154 (665)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999988999999999999998 777777777776553
No 42
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.75 E-value=2.8e-18 Score=200.46 Aligned_cols=175 Identities=19% Similarity=0.225 Sum_probs=137.0
Q ss_pred ccceeeeeecccccccC-------------------------------CccccCCChhhhhhcCCccccceEEEEecCee
Q psy11896 3 HKVKIIHIKQEQVRGKD-------------------------------NVGAVMDSMELERQRGITIQSAATYTLWKDHN 51 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~-------------------------------~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 51 (1043)
+++.++ |...+||+|. .++|++|..+.|+++|+|++.....+++++++
T Consensus 18 ~~i~ii-G~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~ 96 (439)
T 3j2k_7 18 VNVVFI-GHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH 96 (439)
T ss_pred eEEEEE-eCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeE
Confidence 456666 8888888775 24568999999999999999999999999999
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCc-------hhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHH
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-------SQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRV 122 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~-------~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~ 122 (1043)
++|||||||.+|...+..+++.+|++|+|+|++++.. .++.+++..+...++| +|+|+||+|+...+. +..
T Consensus 97 ~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~ 176 (439)
T 3j2k_7 97 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNER 176 (439)
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHH
Confidence 9999999999999999999999999999999998875 5888888888888999 999999999964332 222
Q ss_pred HHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-ccccccc
Q psy11896 123 INQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-ISEMHET 181 (1043)
Q Consensus 123 ~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~~~~~~~ 181 (1043)
.+.+.+.+..++...++... ...+++++||++|.|++++.+.+.|+.++ +.+.++.
T Consensus 177 ~~~i~~~~~~~l~~~g~~~~---~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~ 233 (439)
T 3j2k_7 177 YEECKEKLVPFLKKVGFNPK---KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDN 233 (439)
T ss_pred HHHHHHHHHHHHHHhccccc---CCeeEEEeeccCCcccccccccccccCchHHHHHHHh
Confidence 34444444444333332211 13578999999999999999888888776 4444443
No 43
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.73 E-value=1.4e-17 Score=198.78 Aligned_cols=111 Identities=32% Similarity=0.558 Sum_probs=91.9
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 101 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~ 101 (1043)
++++|++++|+++|+|+......+.|++++|+|||||||.||..++.++++.+|++|+||||.+|+..|++.+|+++.+.
T Consensus 72 ~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~ 151 (548)
T 3vqt_A 72 HATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR 151 (548)
T ss_dssp ----------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT
T ss_pred ccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 102 DVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 102 ~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
++|.++++||+|+..++..+.++++++.++.
T Consensus 152 ~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~ 182 (548)
T 3vqt_A 152 ATPVMTFVNKMDREALHPLDVMADIEQHLQI 182 (548)
T ss_dssp TCCEEEEEECTTSCCCCHHHHHHHHHHHHTS
T ss_pred CCceEEEEecccchhcchhHhhhhhhhhcCC
Confidence 9999999999999999999999999988753
No 44
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.70 E-value=1.1e-16 Score=178.43 Aligned_cols=115 Identities=22% Similarity=0.300 Sum_probs=95.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec-CeeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK-DHNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDtPG 276 (1043)
.--.|+++|++|+|||||+|+|+.....+ .....++|.......+.++ +.+++||||||
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i--------------------~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG 68 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSI--------------------ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG 68 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC--------------------CCSSSCCCCSCEEEEEEETTTEEEEEEECCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccc--------------------cCCCCCceeeEEEEEEecCCCCeEEEEECcC
Confidence 34679999999999999999998443211 1235567777777777888 99999999999
Q ss_pred CCCch----------HHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHHhcCCCeEEEEeccCCC
Q psy11896 277 HVDFT----------VEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~----------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.++. ..+..+++.+|++++|+|+.++...++..+ +..+...++|+++|+||+|+.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 69 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 97755 566788899999999999999999999988 677777899999999999986
No 45
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.70 E-value=7.7e-17 Score=178.64 Aligned_cols=116 Identities=23% Similarity=0.206 Sum_probs=93.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+|+|+.....+. ....++|.+.....+.+++.+++||||||+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~iv--------------------s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~ 65 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPI--------------------SPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC--------------------CSSSCCCCSCEEEEEEETTEEEEEEECCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeee--------------------cCCCCceeEEEEEEEEeCCcEEEEecCccc
Confidence 456899999999999999999985432211 112344544444456678999999999999
Q ss_pred CC--------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 278 VD--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~d--------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
.+ |...+..+++.+|++++|+|+.++....+..+++.+... ++|+++|+||+|+..
T Consensus 66 ~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 66 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp CCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred cchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 87 667778889999999999999999888888888888777 899999999999864
No 46
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.70 E-value=6.9e-18 Score=192.45 Aligned_cols=243 Identities=14% Similarity=0.089 Sum_probs=151.8
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHh
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQK 129 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~ 129 (1043)
+.-+|+| +++|.+.+..+.+.++++++|+|+++........+.+.+ .++|+++|+||+|+...+ .+...+.+...
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRM 127 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHH
Confidence 4444554 778888888888999999999999976544433333333 278999999999997532 22222222222
Q ss_pred hhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeec
Q psy11896 130 TSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHID 209 (1043)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~ 209 (1043)
+ +. ......+++.+||++|.|+++|++.+..+.. -++++++|.+|
T Consensus 128 ~----~~------~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~-------------------------~~~i~~vG~~n 172 (369)
T 3ec1_A 128 A----EE------LGLCPVDVCLVSAAKGIGMAKVMEAINRYRE-------------------------GGDVYVVGCTN 172 (369)
T ss_dssp H----HT------TTCCCSEEEECBTTTTBTHHHHHHHHHHHHT-------------------------TSCEEEECCTT
T ss_pred H----HH------cCCCcccEEEEECCCCCCHHHHHHHHHhhcc-------------------------cCcEEEEcCCC
Confidence 1 11 1112236789999999999999998876531 14699999999
Q ss_pred CCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch-------H
Q psy11896 210 SGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-------V 282 (1043)
Q Consensus 210 ~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~-------~ 282 (1043)
+|||||+|+|+....... ........+|+|....... +. ..+.++||||..+.. .
T Consensus 173 vGKStliN~L~~~~~~~~---------------~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~~~~l~~ 234 (369)
T 3ec1_A 173 VGKSTFINRIIEEATGKG---------------NVITTSYFPGTTLDMIEIP--LE-SGATLYDTPGIINHHQMAHFVDA 234 (369)
T ss_dssp SSHHHHHHHHHHHHHHTT---------------CCCEEEECTTSSCEEEEEE--CS-TTCEEEECCSCCCCSSGGGGSCT
T ss_pred CchHHHHHHHHhhccCCc---------------cceeecCCCCeEEeeEEEE--eC-CCeEEEeCCCcCcHHHHHHHHhH
Confidence 999999999985410000 0001123556776654433 22 348999999975432 1
Q ss_pred HHHHHh---HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC-CHHHHHHHHHHHhCCC
Q psy11896 283 EVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVGHN 350 (1043)
Q Consensus 283 e~~~~l---~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-~~~~~~~~i~~~l~~~ 350 (1043)
+....+ ...|.+++++++...........+.++...+.|+++++||+|.... ..+...+.+++.++..
T Consensus 235 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~ 306 (369)
T 3ec1_A 235 RDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGEL 306 (369)
T ss_dssp TTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTT
T ss_pred HHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCc
Confidence 223333 6789999999995321111111133334567899999999998743 3455667777888753
No 47
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.69 E-value=1.4e-17 Score=189.60 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=146.2
Q ss_pred CCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhcccc
Q psy11896 59 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISN 136 (1043)
Q Consensus 59 G~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~ 136 (1043)
..++|.+.+..+.+.+|++++|+|+++........+.+.+ .++|+++|+||+|+.... .+...+.+...+ ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~----~~ 128 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSA----KQ 128 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHH----HH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHH----HH
Confidence 3467888888888899999999999863211111222221 378999999999996532 222222222211 11
Q ss_pred ccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHH
Q psy11896 137 ESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLT 216 (1043)
Q Consensus 137 ~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~ 216 (1043)
......+++.+||++|.|+++|++.+..+.. -++++++|.+|+|||||+
T Consensus 129 ------~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~-------------------------~~~i~~vG~~nvGKStli 177 (368)
T 3h2y_A 129 ------LGLKPEDVFLISAAKGQGIAELADAIEYYRG-------------------------GKDVYVVGCTNVGKSTFI 177 (368)
T ss_dssp ------TTCCCSEEEECCTTTCTTHHHHHHHHHHHHT-------------------------TSCEEEEEBTTSSHHHHH
T ss_pred ------cCCCcccEEEEeCCCCcCHHHHHhhhhhhcc-------------------------cceEEEecCCCCChhHHH
Confidence 1111236789999999999999999875431 146999999999999999
Q ss_pred hHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCch-------HHHHHH--
Q psy11896 217 ERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-------VEVERA-- 287 (1043)
Q Consensus 217 ~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df~-------~e~~~~-- 287 (1043)
|+|+...... + .+.......+|+|....... +. ..+.++||||..+.. .+....
T Consensus 178 N~L~~~~~~~-----~---------~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 178 NRMIKEFSDE-----T---------ENVITTSHFPGTTLDLIDIP--LD-EESSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp HHHHHHHTTS-----C---------SSCCEEECCC----CEEEEE--SS-SSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred HHHHhhhccc-----c---------ccceecCCCCCeecceEEEE--ec-CCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 9998553111 0 00011223566776654433 22 238899999975532 222222
Q ss_pred -hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC-CHHHHHHHHHHHhCCC
Q psy11896 288 -LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVGHN 350 (1043)
Q Consensus 288 -l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-~~~~~~~~i~~~l~~~ 350 (1043)
....+..++++++...........+.++...+.|+++|+||+|.... ..+...+.+.+.++..
T Consensus 241 ~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~ 305 (368)
T 3h2y_A 241 PTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDL 305 (368)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTT
T ss_pred cccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCCc
Confidence 25678899999985322111111123334567899999999999743 3556777778888753
No 48
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.68 E-value=1.3e-17 Score=196.94 Aligned_cols=163 Identities=25% Similarity=0.260 Sum_probs=132.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe-cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
..|+.++ |..++||||...+.....+.....+|+|.+.....+.+ ++.+++|||||||.+|...+..+++.+|++|+|
T Consensus 4 ~pkV~Iv-G~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIM-GHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEE-ESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 4577777 99999999998888777777888899999999888877 567899999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 81 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
+|++++...++.+++..+...++|+++++||+|+++.+.......+... .. ....+ ....+++++||++|.|
T Consensus 83 VDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~------~~e~~-~~~~~iv~vSAktG~G 154 (537)
T 3izy_P 83 VAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DV------VCEDY-GGDVQAVHVSALTGEN 154 (537)
T ss_dssp CBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TS------CCCCS-SSSEEECCCCSSSSCS
T ss_pred EECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hh------hHHhc-CCCceEEEEECCCCCC
Confidence 9999999999999999999999999999999999765433222222221 10 01111 1235789999999999
Q ss_pred cchHHHHHHhhcc
Q psy11896 161 KTTLTERILFYTG 173 (1043)
Q Consensus 161 i~~L~~~l~~~l~ 173 (1043)
+++|++.+...+.
T Consensus 155 I~eLle~I~~l~~ 167 (537)
T 3izy_P 155 MMALAEATIALAE 167 (537)
T ss_dssp SHHHHHHHHHHHT
T ss_pred chhHHHHHHHhhh
Confidence 9999999987654
No 49
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.67 E-value=2.2e-16 Score=189.31 Aligned_cols=158 Identities=34% Similarity=0.489 Sum_probs=113.5
Q ss_pred ccceeeeeecccccccCC---------------ccccCCChhhhhhcCCccccceEEEEec-----CeeEEEEeCCCCcc
Q psy11896 3 HKVKIIHIKQEQVRGKDN---------------VGAVMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVD 62 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~---------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~-----~~~i~liDTPG~~~ 62 (1043)
.++.|+ |..++||||.. ..+++|+.+.|+++|+|+......+.|. ++.++|||||||.+
T Consensus 5 rnI~Ii-Gh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 5 RNFSII-AHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEE-CCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 356666 99999999872 2356788999999999999998888775 37899999999999
Q ss_pred hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCC
Q psy11896 63 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEH 142 (1043)
Q Consensus 63 ~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 142 (1043)
|...+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+.+.+..+..+++.+.++
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg----------- 152 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVG----------- 152 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhC-----------
Confidence 999999999999999999999999999999999888888999999999999988777666666665432
Q ss_pred CCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 143 KPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 143 ~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
....+++++||++|.|+++|++.+...++.
T Consensus 153 --~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 153 --IDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp --CCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred --CCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 112347899999999999999999887764
No 50
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.67 E-value=6.6e-17 Score=191.97 Aligned_cols=128 Identities=31% Similarity=0.486 Sum_probs=115.0
Q ss_pred ccceeeeeecccccccCCcc----------------------ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCC
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG----------------------AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 60 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~----------------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~ 60 (1043)
.++.|+ |..++||||...+ ++.|+.+.|+++|+|+......+.+++++++|||||||
T Consensus 14 r~IaIi-G~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 14 RTFAII-SHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 355666 9999999998433 36688889999999999999999999999999999999
Q ss_pred cchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 61 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 61 ~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
.+|...+..+++.+|++|+|+|++.+...++..+|..+...++|+++|+||+|+...+..+.++++++.++
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~ 163 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILR 163 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999988777777788877664
No 51
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=8.6e-17 Score=188.05 Aligned_cols=173 Identities=23% Similarity=0.267 Sum_probs=128.4
Q ss_pred ccceeeeeecccccccCCcc---------------------------------ccCCChhhhhhcCCccccceEEEEecC
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG---------------------------------AVMDSMELERQRGITIQSAATYTLWKD 49 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~---------------------------------~~~d~~~~e~~~G~T~~~~~~~~~~~~ 49 (1043)
+|+.++ |..++||+|...+ +.+|..++|+++|+|++.....+.+.+
T Consensus 25 ~~i~ii-G~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 25 LRFLTC-GNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred eEEEEE-ECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 567777 9999999987422 235667789999999999999999999
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHH
Q psy11896 50 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQ 128 (1043)
Q Consensus 50 ~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~ 128 (1043)
.+++|||||||.+|...+..+++.+|++|+|+|++++...++.+++..+...++| +++|+||+|+.+.+.+. .+.+.+
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~-~~~i~~ 182 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERV-FESIKA 182 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHH-HHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999998888888778875 89999999998654332 222222
Q ss_pred hhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc-ccccccc
Q psy11896 129 KTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR-ISEMHET 181 (1043)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~-~~~~~~~ 181 (1043)
.+..++...+. .....+++++||++|.|++++++.+.|+.++ +.+.++.
T Consensus 183 ~~~~~~~~~g~----~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~ 232 (434)
T 1zun_B 183 DYLKFAEGIAF----KPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET 232 (434)
T ss_dssp HHHHHHHTTTC----CCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH
T ss_pred HHHHHHHHhCC----CccCceEEEEeccCCCCcccccccCccccCchHHHHHhc
Confidence 22222222111 1233578999999999999998888888765 4444443
No 52
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.67 E-value=6.4e-17 Score=186.45 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=91.7
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe-eEEEEc
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH-NINIID 273 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liD 273 (1043)
+....++|+++|+.|+|||||+++|+.... ...+..+|+|++.....+.+.+. .++|||
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~--------------------~~~~~~~gtT~d~~~~~~~~~~~~~l~liD 89 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNV--------------------SIVSDYAGTTTDPVYKSMELHPIGPVTLVD 89 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC---------------------------------CCCCEEEEEETTTEEEEEEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCC--------------------CccCCCCCeeeeeEEEEEEECCCCeEEEEE
Confidence 345578999999999999999999974321 11345678888888888888776 999999
Q ss_pred CCCCCCchHH-------HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q psy11896 274 TPGHVDFTVE-------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 274 tPG~~df~~e-------~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 335 (1043)
||||.+|... +..+++.+|++|+|+|+ +...++...+..+.+.++|+++|+||+|+....
T Consensus 90 TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 9999987532 56678889999999999 788999999999999999999999999987543
No 53
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.67 E-value=1.9e-16 Score=189.45 Aligned_cols=157 Identities=31% Similarity=0.428 Sum_probs=116.8
Q ss_pred cceeeeeecccccccCC---------------ccccCCChhhhhhcCCccccceEEEEecC-----eeEEEEeCCCCcch
Q psy11896 4 KVKIIHIKQEQVRGKDN---------------VGAVMDSMELERQRGITIQSAATYTLWKD-----HNINIIDTPGHVDF 63 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~---------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-----~~i~liDTPG~~~~ 63 (1043)
++.|+ |..++||||.. .++++|+.+.|+++|+|+......+.|.. +.++|||||||.+|
T Consensus 8 nI~Ii-Gh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 8 NFCII-AHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEE-CC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred EEEEE-CCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 55666 99999999861 24667889999999999998888877753 68999999999999
Q ss_pred HHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCC
Q psy11896 64 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHK 143 (1043)
Q Consensus 64 ~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 143 (1043)
...+..+++.+|++|+|+|++++.+.++...|..+...++|+++|+||+|+...+..+..+++.+.++
T Consensus 87 ~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg------------ 154 (600)
T 2ywe_A 87 SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLG------------ 154 (600)
T ss_dssp HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSC------------
T ss_pred HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhC------------
Confidence 99999999999999999999999999999999988889999999999999988776666666655432
Q ss_pred CccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 144 PIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 144 ~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
....+++++||++|.|+++|++.+...+++
T Consensus 155 -~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 155 -LDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp -CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 122357899999999999999999887763
No 54
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.67 E-value=1.1e-16 Score=189.64 Aligned_cols=166 Identities=19% Similarity=0.239 Sum_probs=117.8
Q ss_pred ccceeeeeecccccccCC-------------------------------ccccCCChhhhhhcCCccccceEEEEecCee
Q psy11896 3 HKVKIIHIKQEQVRGKDN-------------------------------VGAVMDSMELERQRGITIQSAATYTLWKDHN 51 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~-------------------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 51 (1043)
+|+.++ |..++||+|.. ++|++|....|+++|+|++.....+.+.+.+
T Consensus 34 ~ki~ii-G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 34 LSFVVL-GHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEE-SCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 577777 88888888763 3567899999999999999999999999999
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-------CchhHHHHHHHHHhcCC-CEEEEEecCCCCCCCHHHHH
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPYRVI 123 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~-------~~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~~~~~ 123 (1043)
++|||||||.+|...+..+++.+|++|+|+|++++ ...++.+++..+...++ |+|+|+||+|+.+.+.. ..
T Consensus 113 ~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~-~~ 191 (483)
T 3p26_A 113 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ-RF 191 (483)
T ss_dssp EEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH-HH
T ss_pred EEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH-HH
Confidence 99999999999999999999999999999999987 55788888888887775 49999999999864432 22
Q ss_pred HHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHH---HHhhccc
Q psy11896 124 NQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER---ILFYTGR 174 (1043)
Q Consensus 124 ~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~---l~~~l~~ 174 (1043)
+++.+.+..++...++ .....+++++||++|.|++++.+. ..||.++
T Consensus 192 ~~i~~~~~~~l~~~g~----~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~ 241 (483)
T 3p26_A 192 EEIKSKLLPYLVDIGF----FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGP 241 (483)
T ss_dssp HHHHHHHHHHHHHHTC----CGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCC----CcccceEEEEeeecCCCccccCcccccccccCCC
Confidence 3333333333222221 112357899999999999987543 5666665
No 55
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.65 E-value=2e-16 Score=160.97 Aligned_cols=118 Identities=36% Similarity=0.446 Sum_probs=94.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|.+|+|||||+++|+...-.. ....++|.......+.+++..+.+|||||+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 65 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTE---------------------QEAGGITQHIGAYQVTVNDKKITFLDTPGH 65 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSC---------------------SSCCSSSTTCCCCEEEETTEEEEESCCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcccc---------------------CCCCceeEeeeEEEEEeCCceEEEEECCCC
Confidence 45789999999999999999997432110 112233434444456778889999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCH
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP 336 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~ 336 (1043)
.+|......+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+...+.
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (178)
T 2lkc_A 66 EAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP 124 (178)
T ss_dssp SSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH
Confidence 99887777788999999999999998888888888888888999999999999976543
No 56
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.65 E-value=1.4e-16 Score=176.98 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=88.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+.....+ . ....++|.......+.+++..++++||||+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i--------------~------s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI--------------T------SRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE--------------C------CCCSSCCSSCEEEEEEETTEEEEEESSSSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc--------------c------CCCCCcceeeEEEEEEECCeeEEEEECcCC
Confidence 34689999999999999999998542111 0 112344444444556788899999999999
Q ss_pred C-Cc--------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 278 V-DF--------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~-df--------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
. .+ ...+..+++.+|++++|+|+.. +..++..+++.+...+.|+++|+||+|+..
T Consensus 67 ~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 67 HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred CccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 7 32 2233556789999999999988 999999888888878999999999999874
No 57
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.65 E-value=5e-16 Score=164.60 Aligned_cols=118 Identities=16% Similarity=0.123 Sum_probs=88.9
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE-ecCeeEEEEcCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL-WKDHNINIIDTP 275 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDtP 275 (1043)
....+|+++|+.|+|||||+++|+...... ......|+|......... +++..++|||||
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~-------------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 87 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLA-------------------FASKTPGRTQHINYFSVGPAAEPVAHLVDLP 87 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSS-------------------CTTCCCCSCCCEEEEEESCTTSCSEEEEECC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcce-------------------eecCCCCcccceEEEEecCCCCCcEEEEcCC
Confidence 346789999999999999999997432100 012244566665555554 567899999999
Q ss_pred CCCC----------chHHHHHHhHh---cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 276 GHVD----------FTVEVERALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~d----------f~~e~~~~l~~---~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
|+.+ |...+..+++. +|++++|+|+.++.......++..+...++|+++|+||+|+..
T Consensus 88 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 88 GYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp CCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred CCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 9744 23334444544 8889999999999888888888888889999999999999874
No 58
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.64 E-value=3.3e-17 Score=178.36 Aligned_cols=202 Identities=15% Similarity=0.069 Sum_probs=124.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|++|+|||||+++|+........ ....++|.........|++..++||||||+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~-------------------~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~ 81 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESK-------------------LGSQTLTKTCSKSQGSWGNREIVIIDTPDM 81 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC-------------------TTSCCCCCSCEEEEEEETTEEEEEEECCGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccC-------------------CCCCceeeeeEEEEEEeCCCEEEEEECcCC
Confidence 4578999999999999999999854432211 002226666667778899999999999999
Q ss_pred CCchH-----------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc-----CCCeEEEEe-ccCCCCCCHHHH-
Q psy11896 278 VDFTV-----------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-----DVPCIAFIN-KLDRLGADPYRV- 339 (1043)
Q Consensus 278 ~df~~-----------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviN-KiD~~~~~~~~~- 339 (1043)
.++.. .+..+++.+|++|+|+|+.. +..+...+++++.+. +.|+++|+| |+|+...+..+.
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i 160 (260)
T 2xtp_A 82 FSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYM 160 (260)
T ss_dssp GGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHH
Confidence 87632 22336688999999999985 777888887777665 678888888 999986665442
Q ss_pred -------HHHHHHHhCCCceee-eecc--cc----CCCeeEEEEccccee-EeecCCCCCeeEeecCch--hHHHHHHHH
Q psy11896 340 -------INQMRQKVGHNAAFL-QIPI--GL----GSETKGIIDLIQRKA-IYFEGPLGDNLRIEEIPA--DLKKEAESK 402 (1043)
Q Consensus 340 -------~~~i~~~l~~~~~~~-~~p~--~~----~~~~~g~~dl~~~~~-~~~~~~~g~~~~~~~i~~--~~~~~~~~~ 402 (1043)
+..+.+.++....+. .+|+ .. ..-+.++.+++.... ++|+.+ ...++|. ......++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 235 (260)
T 2xtp_A 161 HDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNG-----LYSLIQRSKCGPVGSDER 235 (260)
T ss_dssp HHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCH-----HHHHC-------------
T ss_pred HhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHH-----HHHHHHHHHhhhhhHHHH
Confidence 233455555432111 0222 11 111223333333333 445321 2234455 445566778
Q ss_pred HHHHHHHHhcCChHHHHHHhcc
Q psy11896 403 RQELIEHVAEGDEILGEMFLEE 424 (1043)
Q Consensus 403 r~~l~e~l~e~dd~l~~~~l~~ 424 (1043)
|..+.+.+++.+++++++|.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ 257 (260)
T 2xtp_A 236 VKEFKQSLIKYMETQRSYTALA 257 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999998754
No 59
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.64 E-value=5.1e-16 Score=155.04 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=87.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+++|+++|+.|+|||||+++|+...... .+...++|.......+.+++..+.+|||||+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 60 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV--------------------VADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-------------------------------CCEEEEEEETTEEEEEEECGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee--------------------ccCCCCceecceEEEEEeCCceEEEEECCCCC
Confidence 3789999999999999999997432110 12244566666666777888999999999998
Q ss_pred C-------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 D-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d-------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+ +...+...++.+|++++|+|+..+.......+...+...++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 61 SGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp SSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred CccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 7 344566778999999999999998887777777777778999999999999863
No 60
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.63 E-value=1.7e-16 Score=185.46 Aligned_cols=166 Identities=23% Similarity=0.283 Sum_probs=115.7
Q ss_pred ccceeeeeecccccccCCcc-------------------------------ccCCChhhhhhcCCccccceEEEEecCee
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG-------------------------------AVMDSMELERQRGITIQSAATYTLWKDHN 51 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~-------------------------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 51 (1043)
+|+.++ |..++||+|...+ +++|+.++|+++|+|++.....+++.+++
T Consensus 7 ~~I~ii-G~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 7 LNLIVI-GHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEE-eCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 567777 9999999988322 34678889999999999999899999999
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-------CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHH
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRV 122 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~-------~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~ 122 (1043)
++|||||||.+|...+..+++.+|++|+|+|++++ +..++.+++..+...++| +++++||+|+.+.+. +..
T Consensus 86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~ 165 (435)
T 1jny_A 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR 165 (435)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHH
T ss_pred EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHH
Confidence 99999999999999999999999999999999987 677888888888888874 899999999976321 112
Q ss_pred HHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 123 INQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 123 ~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+.+.+.+..++...++. ....+++++||++|.|+.++.+.+.|+.+
T Consensus 166 ~~~~~~~i~~~~~~~~~~----~~~~~~i~iSA~~g~~v~e~~~~~~~~~g 212 (435)
T 1jny_A 166 YKEIVDQVSKFMRSYGFN----TNKVRFVPVVAPSGDNITHKSENMKWYNG 212 (435)
T ss_dssp HHHHHHHHHHHHHHTTCC----CTTCEEEECBTTTTBTTTBCCSSCTTCCS
T ss_pred HHHHHHHHHHHHHHcCCC----cCCceEEEeecccCccccccccccccccc
Confidence 222223232222222211 11246899999999999887665555544
No 61
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.62 E-value=1.7e-16 Score=161.52 Aligned_cols=163 Identities=28% Similarity=0.298 Sum_probs=128.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+.....+++|.+.....+.+++..+.+|||||+.++...+..++..+|++|+|+
T Consensus 8 ~~~i~v~-G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 86 (178)
T 2lkc_A 8 PPVVTIM-GHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVV 86 (178)
T ss_dssp CCEEEEE-SCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEE
Confidence 4677777 999999999988888888888888899999888888899999999999999988877778889999999999
Q ss_pred eCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCc
Q psy11896 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 82 Da~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
|++++...+....+..+...++|+++|+||+|+...+.++..+.+.. ... +...+ ....+++++||++|.|+
T Consensus 87 d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-~~~------~~~~~-~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 87 AADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELME-YNL------VPEEW-GGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp ETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTT-TTC------CBTTT-TSSEEEEECCSSSSHHH
T ss_pred ECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHh-cCc------ChhHc-CCcccEEEEecCCCCCH
Confidence 99988777777777777777899999999999976544333322211 110 11001 01247899999999999
Q ss_pred chHHHHHHhhcc
Q psy11896 162 TTLTERILFYTG 173 (1043)
Q Consensus 162 ~~L~~~l~~~l~ 173 (1043)
+++++.+.....
T Consensus 159 ~~l~~~l~~~~~ 170 (178)
T 2lkc_A 159 DHLLEMILLVSE 170 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999876543
No 62
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.62 E-value=2.3e-16 Score=185.76 Aligned_cols=168 Identities=17% Similarity=0.230 Sum_probs=96.3
Q ss_pred ccceeeeeecccccccCC-------------------------------ccccCCChhhhhhcCCccccceEEEEecCee
Q psy11896 3 HKVKIIHIKQEQVRGKDN-------------------------------VGAVMDSMELERQRGITIQSAATYTLWKDHN 51 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~-------------------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 51 (1043)
+++.++ |...+||+|.. +++++|+.+.|+++|+|++.....+++++.+
T Consensus 44 ~~i~ii-G~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 44 VNIVFI-GHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEE-ECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eEEEEE-ECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 456666 88888888873 2456788899999999999999899999999
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-------chhHHHHHHHHHhcCCC-EEEEEecCCCCCCCH-HHH
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRV 122 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-------~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~-~~~ 122 (1043)
++|||||||.+|...+..+++.+|++|+|+|++++. ..++.+++..+...++| +|+++||+|+...+. ++.
T Consensus 123 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~ 202 (467)
T 1r5b_A 123 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEER 202 (467)
T ss_dssp EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHH
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHH
Confidence 999999999999999999999999999999999875 25788888888888998 999999999964321 112
Q ss_pred HHHHHHhhhhccccc-cccCCCCccceeeeeeeecccCCcchHHH--HHHhhccc
Q psy11896 123 INQMRQKTSRWISNE-SLSEHKPIEYIRNIGISAHIDSGKTTLTE--RILFYTGR 174 (1043)
Q Consensus 123 ~~~l~~~~~~~~~~~-~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~--~l~~~l~~ 174 (1043)
.+.+.+.+..++... ++.. ....+++++||++|.|++++++ ...|+.++
T Consensus 203 ~~~i~~e~~~~l~~~~g~~~---~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~ 254 (467)
T 1r5b_A 203 YKECVDKLSMFLRRVAGYNS---KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGP 254 (467)
T ss_dssp HHHHHHHHHHHHHHHHCCCH---HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSC
T ss_pred HHHHHHHHHHHHHHhcCCCc---cCCceEEecccccccccccccccccCccccch
Confidence 222222222222221 1110 0135789999999999998773 33455443
No 63
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.62 E-value=8.6e-16 Score=170.23 Aligned_cols=155 Identities=17% Similarity=0.105 Sum_probs=123.8
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc--------hHHHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~--------~~~~~~~~~~~ 73 (1043)
.++.++ |.+++||+|...+.+..... ....|++|++.....+.+++.+++||||||+.+ +...+..+++.
T Consensus 8 g~V~iv-G~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 8 GFVAIV-GKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 356666 99999999987766665553 457889999988888888899999999999986 67778889999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|++++|+|++++....+..++..+... ++|+++|+||+|+..... ...+.+++ + ..+.+++
T Consensus 87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~-~--------------~~~~~~~ 150 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE-EAMKAYHE-L--------------LPEAEPR 150 (301)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH-HHHHHHHH-T--------------STTSEEE
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH-HHHHHHHH-h--------------cCcCcEE
Confidence 9999999999988888887777778776 899999999999975322 12222221 1 2334689
Q ss_pred eeeecccCCcchHHHHHHhhccc
Q psy11896 152 GISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
++||++|.|+++|++.+...+++
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCCB
T ss_pred EEeCCCCCCHHHHHHHHHHhccc
Confidence 99999999999999999987765
No 64
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.62 E-value=5.9e-16 Score=167.60 Aligned_cols=110 Identities=21% Similarity=0.261 Sum_probs=87.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
++|+++|++|+|||||+++|+... .. ....+|+|+......+.+++..+.+|||||+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~---~~------------------v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~ 60 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN---QR------------------VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYS 60 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS---EE------------------EEECTTSSSEEEEEEEEETTEEEEEEECCCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---CC------------------ccCCCCceEEEEEEEEEECCeEEEEEeCCCccc
Confidence 689999999999999999997432 11 122457888888888899999999999999998
Q ss_pred chHH----------HHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FTVE----------VERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e----------~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|... ....+ +.+|++|+|+|+.. ......+..++...++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 61 LVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp CC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred ccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 8642 23344 78999999999987 3455566777778899999999999964
No 65
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.6e-16 Score=189.04 Aligned_cols=167 Identities=19% Similarity=0.238 Sum_probs=127.6
Q ss_pred CccceeeeeecccccccCC-------------------------------ccccCCChhhhhhcCCccccceEEEEecCe
Q psy11896 2 EHKVKIIHIKQEQVRGKDN-------------------------------VGAVMDSMELERQRGITIQSAATYTLWKDH 50 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~-------------------------------~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~ 50 (1043)
.+|+.++ |..++||+|.. ++|++|.++.|+++|+|++.....+.+.++
T Consensus 167 ~lkV~iv-G~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 167 HLSFVVL-GHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCEEEEE-CCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred ceEEEEE-ECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 4677777 88888888873 245577888999999999999999999999
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC-------CchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHH
Q psy11896 51 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRV 122 (1043)
Q Consensus 51 ~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~-------~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~ 122 (1043)
+++|||||||.+|...+..+++.+|++|+|+|++.+ ...++.+++..+...++| +|+|+||+|+.+.... .
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~-~ 324 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ-R 324 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH-H
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH-H
Confidence 999999999999999999999999999999999865 456788888888877876 9999999999864432 2
Q ss_pred HHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHH---HHhhccc
Q psy11896 123 INQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER---ILFYTGR 174 (1043)
Q Consensus 123 ~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~---l~~~l~~ 174 (1043)
.+.+.+.+..++...++ .....+++++||++|.|++++... +.|+.++
T Consensus 325 ~~ei~~~l~~~l~~~g~----~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~ 375 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGF----FEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGP 375 (611)
T ss_dssp HHHHHHHHHHHHHHHTC----CGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSC
T ss_pred HHHHHHHHHHHHHhhcc----cccCccEEeeecccCCCccccCccccccccccCC
Confidence 23333333333222221 112357899999999999988543 4455554
No 66
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.62 E-value=2.1e-16 Score=185.65 Aligned_cols=164 Identities=24% Similarity=0.262 Sum_probs=124.1
Q ss_pred ccceeeeeecccccccCCcc-------------------------------ccCCChhhhhhcCCccccceEEEEecCee
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG-------------------------------AVMDSMELERQRGITIQSAATYTLWKDHN 51 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~-------------------------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~ 51 (1043)
+++.++ |...+||+|...+ +++|..+.|+++|+|++.....+.+.+.+
T Consensus 8 ~~i~ii-G~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 8 INVVVI-GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 466677 8888888887432 34567778899999999999999999999
Q ss_pred EEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCch-------hHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHH
Q psy11896 52 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS-------QTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVI 123 (1043)
Q Consensus 52 i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~-------~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~ 123 (1043)
++|||||||.+|...+..+++.+|++|+|+|++++..+ ++.+++..+...++| +++|+||+|+.+++.++ +
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~-~ 165 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESR-F 165 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHH-H
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHH-H
Confidence 99999999999999999999999999999999976544 777777777778887 89999999997543332 2
Q ss_pred HHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 124 NQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 124 ~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+.+.+..++...++. ....+++++||++|.|++++...+.|+.
T Consensus 166 ~~i~~~~~~~l~~~g~~----~~~~~~i~vSA~~g~nv~~~~~~~~~~~ 210 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYN----PKTVPFVPISGWNGDNMIEATTNAPWYK 210 (458)
T ss_dssp HHHHHHHHHHHHHHTCC----GGGCCEEECCTTTCBTTTBCCSSCTTCC
T ss_pred HHHHHHHHHHHHHcCCC----ccCceEEEeecccCcCcccccccCchhh
Confidence 22222222222221111 1124689999999999998876666664
No 67
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.62 E-value=1.2e-15 Score=169.86 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=128.4
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEec-CeeEEEEeCCCCcc----------hHHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWK-DHNINIIDTPGHVD----------FTVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~-~~~i~liDTPG~~~----------~~~~~~~~ 70 (1043)
.++.++ |..++||+|...+.+..... ....+++|++.....+..+ +.+++||||||+.+ +...+..+
T Consensus 11 g~v~iv-G~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~ 89 (308)
T 3iev_A 11 GYVAIV-GKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS 89 (308)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH
T ss_pred CEEEEE-CCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHH
Confidence 356677 99999999997777666554 5788999999999999998 99999999999964 44677889
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHH-HHHHHhcCCCEEEEEecCCCC-CC-CHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTV-NRQMKRYDVPCIAFINKLDRL-GA-DPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~-~~~l~~~~~piilvlNKiDl~-~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
++.+|++++|+|++++.+..+..+ +..+...++|+++|+||+|+. .. ......+.+.+.++ .+
T Consensus 90 l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~--------------~~ 155 (308)
T 3iev_A 90 LEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP--------------EL 155 (308)
T ss_dssp HHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT--------------TC
T ss_pred hhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc--------------CC
Confidence 999999999999998888888887 677777889999999999997 32 22333334433221 23
Q ss_pred eeeeeeeecccCCcchHHHHHHhhccccccc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTGRISEM 178 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~ 178 (1043)
.+++++||++|.|+++|++.+...+++....
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~ 186 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYLPEGEPL 186 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSCBCCCS
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCccCCCC
Confidence 5789999999999999999999888754433
No 68
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.62 E-value=5.1e-16 Score=183.20 Aligned_cols=161 Identities=23% Similarity=0.268 Sum_probs=115.9
Q ss_pred ccceeeeeecccccccCCcccc-------CCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcC
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAV-------MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLD 75 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~-------~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD 75 (1043)
+++.++ |..++||+|...+.. +|..+.|+++|+|++..+..+.+++.+++|||||||.+|...+..+++.+|
T Consensus 20 ~~I~ii-G~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD 98 (482)
T 1wb1_A 20 INLGIF-GHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIID 98 (482)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCC
T ss_pred CEEEEE-CCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCC
Confidence 456667 999999999843333 566889999999999999899999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
++|+|+|++++...++.+++..+...++|+++|+||+|+.+.+ .+...+++.+.+ ... ..+...+++++|
T Consensus 99 ~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l----~~~-----~~~~~~~ii~vS 169 (482)
T 1wb1_A 99 LALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSIL----QST-----HNLKNSSIIPIS 169 (482)
T ss_dssp EEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHH----HHS-----SSGGGCCEEECC
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHH----hhh-----cccccceEEEEE
Confidence 9999999999999999999988888999999999999997521 122233333322 111 012235789999
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|+++|++.+...++
T Consensus 170 A~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 170 AKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhc
Confidence 9999999999999987664
No 69
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.61 E-value=2.4e-15 Score=164.81 Aligned_cols=174 Identities=20% Similarity=0.189 Sum_probs=108.5
Q ss_pred EEeCCCCc-chHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhh
Q psy11896 54 IIDTPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132 (1043)
Q Consensus 54 liDTPG~~-~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~ 132 (1043)
+-+.|||. +...++...+..+|++++|+|++++.......+.+++ .++|.++|+||+|+.+ . ...+.+.+.+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~--~-~~~~~~~~~~~- 76 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD--A-AVTQQWKEHFE- 76 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC--H-HHHHHHHHHHH-
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC--H-HHHHHHHHHHH-
Confidence 44689997 5778899999999999999999987776654454444 5789999999999975 2 12223322221
Q ss_pred ccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCc
Q psy11896 133 WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGK 212 (1043)
Q Consensus 133 ~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GK 212 (1043)
. .. .+++++||+++.|+++|++.+...+....+..... . ...+..+++++|.+|+||
T Consensus 77 ---~--------~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~-----~------~~~~~~~v~~vG~~nvGK 133 (282)
T 1puj_A 77 ---N--------QG-IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAK-----G------VKPRAIRALIIGIPNVGK 133 (282)
T ss_dssp ---T--------TT-CCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHT-----T------CCCCCEEEEEEESTTSSH
T ss_pred ---h--------cC-CcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhc-----C------CCCCCceEEEEecCCCch
Confidence 0 11 26788999999999999998887665422111000 0 012236799999999999
Q ss_pred ccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 213 TTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 213 TTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
|||+|+|+...... ....+|+|.......+ +..+.++||||..+
T Consensus 134 SsliN~l~~~~~~~--------------------~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 134 STLINRLAKKNIAK--------------------TGDRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp HHHHHHHHTSCCC--------------------------------CCEEE---TTTEEEEECCCCCC
T ss_pred HHHHHHHhcCceee--------------------cCCCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 99999997432111 1224566665543322 45799999999754
No 70
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.61 E-value=9.5e-16 Score=153.09 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=112.9
Q ss_pred CccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcc-------hHHHHHHHhhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVD-------FTVEVERALRV 73 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~-------~~~~~~~~~~~ 73 (1043)
++|+.++ |..++||+|...+...+... .+..+++|.+.....+..++.++.+|||||+.+ +...+..+++.
T Consensus 1 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 1 MHKVVIV-GRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 3577788 99999999997777666543 567889999998888889999999999999987 56677788999
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++++.......+..++...++|+++|+||+|+.+.. +....+. .....+++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---------~~~~~~~---------~~~~~~~~~~ 141 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE---------LYLGPLY---------GLGFGDPIPT 141 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG---------GGCGGGG---------GGSSCSCEEC
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch---------HhHHHHH---------hCCCCCeEEE
Confidence 999999999998877777777777777889999999999986431 1111110 1222357899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 142 Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 142 SSEHARGLEELLEAIWERL 160 (161)
T ss_dssp BTTTTBSHHHHHHHHHHHC
T ss_pred ecccCCChHHHHHHHHHhC
Confidence 9999999999999988654
No 71
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.61 E-value=1.1e-15 Score=177.08 Aligned_cols=164 Identities=24% Similarity=0.294 Sum_probs=125.8
Q ss_pred ccceeeeeecccccccCCcc-----------------ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG-----------------AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~-----------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~ 65 (1043)
+|+.++ |..++||+|...+ +.+|..++|+++|+|++.....+.+.+.+++|||||||.+|..
T Consensus 12 ~~I~ii-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 90 (405)
T 2c78_A 12 VNVGTI-GHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK 90 (405)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred EEEEEE-cCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHH
Confidence 566777 9999999887221 1457788999999999998888888889999999999999999
Q ss_pred HHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 66 ~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
.+..+++.+|++|+|+|++++...++.+++..+...++| +++++||+|+.. +. ...+.+.+.+..++...++.
T Consensus 91 ~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~-~~~~~~~~~~~~~l~~~~~~---- 164 (405)
T 2c78_A 91 NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DP-ELLDLVEMEVRDLLNQYEFP---- 164 (405)
T ss_dssp HHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CH-HHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cH-HHHHHHHHHHHHHHHHhccc----
Confidence 999999999999999999999999999999888888999 899999999975 22 22222222222222221111
Q ss_pred ccceeeeeeeecccCC------------------cchHHHHHHhhcc
Q psy11896 145 IEYIRNIGISAHIDSG------------------KTTLTERILFYTG 173 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~G------------------i~~L~~~l~~~l~ 173 (1043)
....+++++||++|.| +++|++.+..+++
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 1124689999999987 6677777766554
No 72
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.60 E-value=5.6e-15 Score=152.82 Aligned_cols=117 Identities=14% Similarity=0.273 Sum_probs=81.7
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
+.....+|+++|++|+|||||+++|+.... .. ......|.|....... . +..+.+|||
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~------------------~~~~~~~~t~~~~~~~--~-~~~~~l~Dt 76 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKN-LA------------------RTSSKPGKTQTLNFYI--I-NDELHFVDV 76 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC--------------------------------CCEEEEE--E-TTTEEEEEC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCC-cc------------------ccCCCCCceeeEEEEE--E-CCcEEEEEC
Confidence 344578999999999999999999974310 00 0112334444433322 2 347999999
Q ss_pred CCC----------CCchHHHHHHhHhc---CeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 275 PGH----------VDFTVEVERALRVL---DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~----------~df~~e~~~~l~~~---D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
||+ ..|...+...++.+ |++++|+|+.++.......+++.+...+.|+++|+||+|+..
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 77 PGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp CCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 994 33444455556655 999999999999888888888888888999999999999864
No 73
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.60 E-value=1e-14 Score=150.23 Aligned_cols=116 Identities=18% Similarity=0.079 Sum_probs=83.2
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
..+..+|+++|++|+|||||+++|+...... ....|+......+.+++..+.+||||
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~l~Dt~ 75 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE-----------------------DMIPTVGFNMRKITKGNVTIKLWDIG 75 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------SCCCCCSEEEEEEEETTEEEEEEEEC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------ccCCCCceeEEEEEeCCEEEEEEECC
Confidence 3446789999999999999999997432110 00112222233466788999999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH----hcCCCeEEEEeccCCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~~ 334 (1043)
|+.+|...+..+++.+|++++|+|+.+....+.. ..+.... ..++|+++|+||+|+...
T Consensus 76 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp CSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 9999988888889999999999999875333322 2222222 257899999999998753
No 74
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.59 E-value=1.3e-15 Score=166.88 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=86.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+.... . ....+|+|+......+.+.+..+.+|||||+.+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~---~------------------v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~ 62 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQ---R------------------VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCE---E------------------EEECTTSSSEEEEEEEECSSCEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc---c------------------cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCc
Confidence 5799999999999999999974321 1 123567888888888888899999999999988
Q ss_pred chH---------HHH-HH--hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FTV---------EVE-RA--LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~---------e~~-~~--l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|.. .+. .. .+.+|++++|+|+.. .........++.+.++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp SCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred cccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 762 111 12 268999999999987 3445556677778899999999999964
No 75
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.59 E-value=2.8e-15 Score=174.03 Aligned_cols=160 Identities=20% Similarity=0.200 Sum_probs=123.1
Q ss_pred ccceeeeeecccccccCCcccc---CCChhhhhhcCCccccceEEEEec-----------------------CeeEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLWK-----------------------DHNINIID 56 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~~-----------------------~~~i~liD 56 (1043)
+++.++ |..++||+|...+.. .|..++|+++|+|++..+..+.+. ..+++|||
T Consensus 11 ~~I~ii-G~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 11 VNIGMV-GHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 456667 999999999966655 788899999999999877655541 16799999
Q ss_pred CCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCCH-HHHHHHHHHhhhhc
Q psy11896 57 TPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKTSRW 133 (1043)
Q Consensus 57 TPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~-~~~~~~l~~~~~~~ 133 (1043)
||||.+|...+..++..+|++|+|+|++++. ..++.+++..+...+. |+++|+||+|+.+.+. ....+++.+.+..
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~- 168 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG- 168 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT-
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999887 7888888777776665 6999999999975321 1233444433321
Q ss_pred cccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 134 ISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 134 ~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
......+++++||++|.|+++|++.+...++
T Consensus 169 ---------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 169 ---------TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp ---------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ---------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 1122357899999999999999999987655
No 76
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.59 E-value=8.3e-17 Score=194.16 Aligned_cols=137 Identities=23% Similarity=0.263 Sum_probs=73.3
Q ss_pred cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-------chhHHHH
Q psy11896 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTV 94 (1043)
Q Consensus 22 ~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-------~~~~~~~ 94 (1043)
+|++|.+++|+++|+|++.....+.+++++++|||||||.+|...+..+++.+|++|+|+|++.+. ..++.++
T Consensus 227 ~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~ 306 (592)
T 3mca_A 227 AWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH 306 (592)
T ss_dssp --------------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH
T ss_pred hhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999754 7889999
Q ss_pred HHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhcc-ccccccCCCCccceeeeeeeecccCCcch
Q psy11896 95 NRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWI-SNESLSEHKPIEYIRNIGISAHIDSGKTT 163 (1043)
Q Consensus 95 ~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~ 163 (1043)
+..+...++| +|+|+||+|+.+++... .+.+.+.+..++ ...++ .....+++++||++|.|+++
T Consensus 307 l~~~~~lgip~iIvviNKiDl~~~~~~~-~~~i~~el~~~l~~~~g~----~~~~~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 307 AYLLRALGISEIVVSVNKLDLMSWSEDR-FQEIKNIVSDFLIKMVGF----KTSNVHFVPISAISGTNLIQ 372 (592)
T ss_dssp HHHHHHSSCCCEEEEEECGGGGTTCHHH-HHHHHHHHHHHHTTTSCC----CGGGEEEEEECSSSCSSSCS
T ss_pred HHHHHHcCCCeEEEEEeccccccccHHH-HHHHHHHHHHHHHHhhCC----CccceEEEEEecccCccccc
Confidence 8888889997 99999999997654433 233333333332 22221 11235789999999999983
No 77
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.59 E-value=1.2e-15 Score=176.32 Aligned_cols=164 Identities=23% Similarity=0.224 Sum_probs=125.8
Q ss_pred ccceeeeeecccccccCCccc----------------cCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGA----------------VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~----------------~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 66 (1043)
+|+.++ |..++||+|...+. .+|..+.|+++|+|++.....+.+.+.+++|||||||.+|...
T Consensus 4 ~~I~ii-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 4 VNVGTI-GHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred EEEEEE-eCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 577777 99999999983222 2456667889999999988888888899999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+..+++.+|++|+|+|++++...++.+++..+...++| +++++||+|+.+ +. +..+.+.+.+..++...++. .
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~-~~~~~~~~~~~~~l~~~~~~----~ 156 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DS-EMVELVELEIRELLTEFGYK----G 156 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CH-HHHHHHHHHHHHHHHHTTSC----T
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CH-HHHHHHHHHHHHHHHHcCCC----c
Confidence 99999999999999999999999999999888888999 789999999975 22 22222222222222221211 1
Q ss_pred cceeeeeeeecccCC----------cchHHHHHHhhcc
Q psy11896 146 EYIRNIGISAHIDSG----------KTTLTERILFYTG 173 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~G----------i~~L~~~l~~~l~ 173 (1043)
...+++++||++|.| +++|++.+..+++
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 124789999999875 7788888877665
No 78
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=3.4e-15 Score=173.14 Aligned_cols=160 Identities=21% Similarity=0.221 Sum_probs=111.9
Q ss_pred ccceeeeeecccccccCCcccc---CCChhhhhhcCCccccceEEEEe---------------c--------CeeEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAV---MDSMELERQRGITIQSAATYTLW---------------K--------DHNINIID 56 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~---~d~~~~e~~~G~T~~~~~~~~~~---------------~--------~~~i~liD 56 (1043)
+++.++ |..++||+|...+.. .|..+.|+++|+|++..+....+ . ...++|||
T Consensus 9 ~~I~ii-G~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 9 VNIGMV-GHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp EEEEEE-SCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 567777 999999999965555 67889999999999887655443 1 16799999
Q ss_pred CCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCCH-HHHHHHHHHhhhhc
Q psy11896 57 TPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKTSRW 133 (1043)
Q Consensus 57 TPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~~-~~~~~~l~~~~~~~ 133 (1043)
||||.+|...+..++..+|++|+|+|++++. ..++.+++..+...+. |+++++||+|+.+.+. ....+++.+.+..
T Consensus 88 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~- 166 (408)
T 1s0u_A 88 SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG- 166 (408)
T ss_dssp CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh-
Confidence 9999999999999999999999999999886 7888888777776665 7999999999976432 2233444443321
Q ss_pred cccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 134 ISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 134 ~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
......+++++||++|.|+++|++.+...++
T Consensus 167 ---------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 167 ---------TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp ---------STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred ---------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 1122357899999999999999999987654
No 79
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.58 E-value=3.1e-15 Score=175.23 Aligned_cols=113 Identities=20% Similarity=0.302 Sum_probs=88.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
++|+++|.+|+|||||+|+|+.....+ .+...|+|.+.....+.|++..+.+|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~--------------------v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI--------------------VEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------------------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce--------------------ecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 579999999999999999997432111 234678999988889999999999999999765
Q ss_pred c---------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 F---------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f---------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+ ...+..+++.+|++++|+|+..+.......+..++.+.++|+++|+||+|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 62 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp SGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 2 3446778899999999999999998888888888888899999999999963
No 80
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=1.2e-14 Score=149.53 Aligned_cols=111 Identities=15% Similarity=0.066 Sum_probs=77.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|+.|+|||||+++|+..... . ... |+......+.+++..+.+|||||+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~------------------~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV--H------------------TSP----TIGSNVEEIVINNTRFLMWDIGGQE 71 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE--E------------------EEC----CSCSSCEEEEETTEEEEEEECCC--
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--c------------------CcC----CCccceEEEEECCEEEEEEECCCCH
Confidence 468999999999999999999732211 0 001 1112233456688999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
+|......+++.+|++++|+|+.+....... ..+..... .+.|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 72 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp --CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 9988888889999999999999986433322 22333322 5789999999999874
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.58 E-value=3.6e-15 Score=154.25 Aligned_cols=128 Identities=22% Similarity=0.126 Sum_probs=82.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeE-EEEecCeeEEEEcCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT-YTLWKDHNINIIDTP 275 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~-~~~~~~~~i~liDtP 275 (1043)
....+|+++|++|+|||||++.|......... .. ......+.....|.+...... .+..+...+++||||
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~------~~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~ 82 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRK------GE---MVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP 82 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGB------CC---CEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcccccc------cc---ccccccccccceeeeecccccccccCCceEEEEEeCC
Confidence 45678999999999999999766532111100 00 000000000111111111111 122345689999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh---------cCCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR---------YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~---------~~~p~ivviNKiD~~~ 333 (1043)
|+.+|......+++.+|++|+|+|+.++...+....+..+.. .++|+++|+||+|+..
T Consensus 83 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 999999999999999999999999997766655555443322 5789999999999864
No 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.58 E-value=8.3e-15 Score=147.79 Aligned_cols=113 Identities=19% Similarity=0.047 Sum_probs=81.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...- . . ...|+......+.+++..+.+|||||+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~---------------~-------~~~t~~~~~~~~~~~~~~~~~~Dt~G~ 61 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV--V---------------T-------TIPTIGFNVETVTYKNLKFQVWDLGGL 61 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC--C---------------C-------CCCCSSEEEEEEEETTEEEEEEEECCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--C---------------C-------cCCcCccceEEEEECCEEEEEEECCCC
Confidence 347899999999999999999963211 0 0 011222333456678899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHH-Hh---cCCCeEEEEeccCCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM-KR---YDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~-~~---~~~p~ivviNKiD~~~~ 334 (1043)
.+|...+..+++.+|++++|+|+.+....... ..+... .. .++|+++|+||+|+...
T Consensus 62 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 99988888888999999999999876433222 222222 22 57899999999998743
No 83
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.58 E-value=5.7e-15 Score=161.63 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=88.2
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
+++|+++|++|+|||||+++|+.... . ....+|+|+......+.+++..+++|||||+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~---~------------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 61 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ---H------------------VGNWPGVTVEKKEGIMEYREKEFLVVDLPGIY 61 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE---E------------------EEECTTSSCEEEEEEEEETTEEEEEEECCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc---c------------------cCCCCCeEEEeeEEEEEECCceEEEEeCCCcc
Confidence 57899999999999999999974321 1 12356778888888889999999999999998
Q ss_pred CchHH------HHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcC-CCeEEEEeccCCC
Q psy11896 279 DFTVE------VERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e------~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~-~p~ivviNKiD~~ 332 (1043)
+|... ....+ ..+|++++|+|+..+ .+....+.++...+ +|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 62 SLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp CCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred ccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 87652 23333 569999999999985 45666677777778 9999999999953
No 84
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.57 E-value=1.2e-14 Score=150.79 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=83.6
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+....++|+++|+.|+|||||+++|+....... ++ . .|+......+.+.+..+.+||
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---------------~~---~----~t~~~~~~~~~~~~~~~~i~D 69 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---------------HI---T----ATVGYNVETFEKGRVAFTVFD 69 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC-------------------CC---C----CCSSEEEEEEEETTEEEEEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---------------cc---c----cccceeEEEEEeCCEEEEEEE
Confidence 3445578999999999999999999974321110 00 0 122223334568889999999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHhc-----------CCCeEEEEeccCCCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKRY-----------DVPCIAFINKLDRLGA 334 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~~-----------~~p~ivviNKiD~~~~ 334 (1043)
|||+.+|...+..+++.+|++|+|+|+.++...... ..+..+... ++|+++|+||+|+...
T Consensus 70 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 70 MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp ECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 999999988888889999999999999986543332 233333332 8999999999998743
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.57 E-value=2.8e-14 Score=142.86 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=79.5
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+++|++|+|||||+++|+...- .++ . .|+......+.+++..+.+|||||+.+|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-----------------~~~---~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 57 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-----------------VTT---I----PTIGFNVETVEYKNISFTVWDVGGQDKI 57 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-----------------SCC---C----CCSSCCEEEEECSSCEEEEEECCCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-----------------Ccc---c----CcCceeEEEEEECCEEEEEEEcCCChhh
Confidence 699999999999999999974211 000 0 1222233446678899999999999999
Q ss_pred hHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 281 TVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 281 ~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
......+++.+|++++|+|+.+.-..... ..+..... .+.|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 98888899999999999999876332222 22222222 3789999999999864
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=148.68 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=82.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|+.|+|||||+++|+....... ....|+......+.+++..+.+|||||+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 77 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQ----------------------NILPTIGFSIEKFKSSSLSFTVFDMSGQ 77 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCS----------------------SCCCCSSEEEEEEECSSCEEEEEEECCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCC----------------------CcCCccceeEEEEEECCEEEEEEECCCC
Confidence 457899999999999999999974321110 0112333334456677899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHH-Hh-----cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM-KR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~-~~-----~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|+.+....... ..+... .. .++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 78 GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 99988888889999999999999875322221 222222 22 4789999999999864
No 87
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1.1e-14 Score=150.38 Aligned_cols=117 Identities=16% Similarity=0.061 Sum_probs=84.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
++..+|+++|..|+|||||+++|+...... ......|.+.......+......+.+|||||
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 81 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH-------------------NISPTIGASFMTKTVPCGNELHKFLIWDTAG 81 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT-------------------TCCCCSSEEEEEEEEECSSSEEEEEEEEECC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC-------------------CcCCCcceeEEEEEEEeCCEEEEEEEEcCCC
Confidence 446789999999999999999997432100 0112334444444444444567899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+.+|.......++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred chhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 999998888999999999999999876544433333 22332 378999999999975
No 88
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.56 E-value=4.9e-15 Score=156.90 Aligned_cols=165 Identities=12% Similarity=0.040 Sum_probs=120.5
Q ss_pred ccceeeeeecccccccCCccccCCC--hhhhhhcCCccccceEEEE-ecCeeEEEEeCCCCcc----------hHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDS--MELERQRGITIQSAATYTL-WKDHNINIIDTPGHVD----------FTVEVER 69 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~--~~~e~~~G~T~~~~~~~~~-~~~~~i~liDTPG~~~----------~~~~~~~ 69 (1043)
.|+.++ |..++||+|...+.+.+. ......+|+|++.....+. .++..+.||||||+.+ +...+..
T Consensus 30 ~~i~v~-G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 30 PEIAFA-GRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp CEEEEE-ESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CEEEEE-cCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 567777 999999999977766665 2667888999988776665 5578999999999742 3444445
Q ss_pred Hhhh---cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 70 ALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 70 ~~~~---aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+++. +|++++|+|++++....+..++.++...++|+++|+||+|+.... .....+.+.+.+...... ...
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~------~~~ 182 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA------GYA 182 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH------TCC
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc------ccC
Confidence 5555 888999999998888888888888888899999999999997532 122233333333211000 001
Q ss_pred cceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
...+++++||++|.|+++|++.+...++.
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 33578999999999999999999887764
No 89
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.56 E-value=2.2e-14 Score=148.04 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=82.9
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.....+|+++|+.|+|||||+++|+...... .....|+|..... ...+..+.+||||
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------------~~~~~~~t~~~~~---~~~~~~~~i~Dt~ 76 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF--------------------VSKTPGKTRSINF---YLVNSKYYFVDLP 76 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC--------------------CCSSCCCCCCEEE---EEETTTEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccc--------------------ccCCCCCccCeEE---EEECCcEEEEECC
Confidence 3456789999999999999999998543110 1112344433322 2235678999999
Q ss_pred CC----------CCchHHHHHHhHh---cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 276 GH----------VDFTVEVERALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~----------~df~~e~~~~l~~---~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
|. ..|...+...++. +|++++|+|+..+.......++.++...++|+++|+||+|+..
T Consensus 77 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 77 GYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK 147 (195)
T ss_dssp CBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 93 2344444444544 4999999999998888888888888888999999999999864
No 90
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.56 E-value=2.4e-14 Score=147.98 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=84.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
+...+|+++|++|+|||||+++|+..... .+....++.......+.+++ ..+.+|||
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 72 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYT---------------------ESYISTIGVDFKIRTIELDGKTIKLQIWDT 72 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC---------------------SCCCCCSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC---------------------CCCCCcccceEEEEEEEECCEEEEEEEEEC
Confidence 45789999999999999999999732111 11123344444445555665 67999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
||+.+|......+++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+..
T Consensus 73 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp CCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 99999998899999999999999999975443333323 22222 3789999999999863
No 91
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.56 E-value=1.2e-14 Score=172.68 Aligned_cols=128 Identities=30% Similarity=0.487 Sum_probs=100.1
Q ss_pred ccceeeeeecccccccCCc----------------------cccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCC
Q psy11896 3 HKVKIIHIKQEQVRGKDNV----------------------GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 60 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~----------------------~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~ 60 (1043)
+++.++ |..++||||... .+++|+.+.|+++|+|+......+.++++.++|||||||
T Consensus 14 ~~I~Ii-G~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 14 RTFAII-SHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CEEEEE-CCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 466777 999999999721 345677888999999999999999999999999999999
Q ss_pred cchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhh
Q psy11896 61 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131 (1043)
Q Consensus 61 ~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~ 131 (1043)
.+|...+..+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...+..+.++++++.++
T Consensus 93 ~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~ 163 (529)
T 2h5e_A 93 EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELK 163 (529)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999988888999999999999988777667777777653
No 92
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.56 E-value=6.1e-15 Score=159.90 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=86.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+.... . ....+|+|+......+.+++..+.+|||||+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~---~------------------~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~ 62 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ---Y------------------VANWPGVTVEKKEGVFTYKGYTINLIDLPGT 62 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE---E------------------EEECTTSCCEEEEEEEEETTEEEEEEECCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC---c------------------ccCCCCceEEEEEEEEEECCeEEEEEECCCc
Confidence 347899999999999999999973211 0 1224588888888888888999999999999
Q ss_pred CCchH-----HH-HHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 278 VDFTV-----EV-ERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~-----e~-~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+|.. .+ ...+ ..+|++++|+|+... ......+.++...++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 63 YSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp SSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 88753 12 2333 479999999999873 334456677777899999999999963
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.56 E-value=6.3e-14 Score=143.42 Aligned_cols=113 Identities=20% Similarity=0.173 Sum_probs=81.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|.... ... .....|.+ ...+.+++..+.+|||||+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~--~~~------------------~~~t~g~~----~~~~~~~~~~l~i~Dt~G~ 70 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED--ISH------------------ITPTQGFN----IKSVQSQGFKLNVWDIGGQ 70 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC--CEE------------------EEEETTEE----EEEEEETTEEEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC--CCc------------------ccCcCCeE----EEEEEECCEEEEEEECCCC
Confidence 35789999999999999999997431 110 01122222 2345667899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHH-H---hcCCCeEEEEeccCCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM-K---RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~-~---~~~~p~ivviNKiD~~~~ 334 (1043)
.+|...+..+++.+|++++|+|+.+....... ..+... . ..++|+++|+||+|+...
T Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 99998888999999999999999875433322 222222 1 257899999999998753
No 94
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.56 E-value=2.5e-14 Score=145.83 Aligned_cols=117 Identities=16% Similarity=0.071 Sum_probs=80.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|+.|+|||||+++|+....... .....|.+.......+......+.+|||||+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 71 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEF-------------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTT-------------------SCCCSCCSEEEEEEEETTEEEEEEEEECCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCc-------------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCC
Confidence 457899999999999999999973321100 0111222222222222223468999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHHh---cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
.+|.......++.+|++++|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 999988889999999999999998765433322 2333333 3778999999999863
No 95
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.56 E-value=4.1e-15 Score=156.66 Aligned_cols=155 Identities=17% Similarity=0.078 Sum_probs=108.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.||++++ |+.++||||...+++.+.+..+..|.+..+.....+..++ +++.||||+|+++|...+..+++.+|++++
T Consensus 13 ~~Kivlv-Gd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 13 KFKLVFL-GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred cEEEEEE-CcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 4899999 9999999999999999999998888877777666666665 468999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHH---HhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQM---KRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l---~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|.++..+..... .+..+ ...++|++||+||+|+.+.. ..+..+.+.+.+ . .+.+.+
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~-------------~---~~~~e~ 155 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-------------N---VMFIET 155 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-------------T---CEEEEE
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHh-------------C---CeeEEE
Confidence 99998643333222 22222 23468999999999986421 111122232222 1 245779
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.||+++|+.++..+.
T Consensus 156 SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC-
T ss_pred eCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 96
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.56 E-value=3.3e-14 Score=144.47 Aligned_cols=114 Identities=18% Similarity=0.057 Sum_probs=80.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC---eeEEEEcC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD---HNINIIDT 274 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~liDt 274 (1043)
+..+|+++|++|+|||||+++|+...-. .+..+.++.+.....+.+.+ ..+.+|||
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt 63 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG---------------------KQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT---------------------HHHHHTTTSSEEEEEEEETTTEEEEEEEEEC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC---------------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEEC
Confidence 3468999999999999999999743210 11122222233334455554 78999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh-----cCCC-eEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR-----YDVP-CIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~-----~~~p-~ivviNKiD~~ 332 (1043)
||+.+|......+++.+|++++|+|+.+....+....| ..+.. .+.| +++|+||+|+.
T Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred CCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 99999988888999999999999999875443333333 22222 2667 78999999975
No 97
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.55 E-value=3.6e-14 Score=147.90 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=80.4
Q ss_pred CCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEE
Q psy11896 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNIN 270 (1043)
Q Consensus 193 ~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~ 270 (1043)
....+...+|+++|.+|+|||||+++|+...-. .+....++.......+.+++ ..+.
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~l~ 81 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFS---------------------ERQGSTIGVDFTMKTLEIQGKRVKLQ 81 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CEEEEEEEETTEEEEEE
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCC---------------------CCCCCCcceEEEEEEEEECCEEEEEE
Confidence 344456789999999999999999999732110 00111122222233445555 5899
Q ss_pred EEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 271 liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+|||||+.+|......+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 82 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 82 IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 999999999999999999999999999999875433332222 23332 568999999999985
No 98
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.55 E-value=2.7e-14 Score=147.65 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=82.5
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINII 272 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~li 272 (1043)
+.+...+|+++|..|+|||||+++|+..... .+....++.......+.+++ ..+.+|
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~ 80 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFC---------------------EACKSTVGVDFKIKTVELRGKKIRLQIW 80 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC-----------------------------CCTTEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCC---------------------cCCCCccceeEEEEEEEECCeEEEEEEE
Confidence 3445678999999999999999999632110 01122223333333444554 579999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH---hcCCCeEEEEeccCCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~ 332 (1043)
||||+.+|.......++.+|++|+|+|+.+....+....|. .+. ..++|+++|+||+|+.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred eCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999999999999999999999999999865554443332 222 2478999999999975
No 99
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.55 E-value=8.8e-15 Score=166.56 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=121.9
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa 83 (1043)
++.++ |...+||+|...+.. ++|+|++.....+++++++++|||||||.+|...+..+++.+|++|+|+|
T Consensus 23 ~i~ii-G~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAII-GTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEE-ESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEE-CCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 34555 999999999865555 78999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCCCE-EEEEe-cCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeee--eeecc-
Q psy11896 84 VGGVQSQTLTVNRQMKRYDVPC-IAFIN-KLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG--ISAHI- 157 (1043)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~pi-ilvlN-KiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~--iSa~~- 157 (1043)
+.+...++.+++..+...++|. ++++| |+|+ +.+. +...+++++.+ .. ......++++ +||++
T Consensus 93 ~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l----~~------~~~~~~~ii~~~~SA~~~ 161 (370)
T 2elf_A 93 PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVIT----SG------TVLQDWECISLNTNKSAK 161 (370)
T ss_dssp TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT----TT------STTTTCEEEECCCCTTSS
T ss_pred CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH----Hh------cCCCceEEEecccccccC
Confidence 8899999999999888899998 99999 9999 4221 12223343332 11 1123357899 99999
Q ss_pred --cCCcchHHHHHHhhccc
Q psy11896 158 --DSGKTTLTERILFYTGR 174 (1043)
Q Consensus 158 --g~Gi~~L~~~l~~~l~~ 174 (1043)
|.|+++|++.+..+++.
T Consensus 162 ~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 162 NPFEGVDELKARINEVAEK 180 (370)
T ss_dssp STTTTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhhccc
Confidence 99999999999887764
No 100
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.55 E-value=5.2e-14 Score=145.58 Aligned_cols=111 Identities=19% Similarity=0.136 Sum_probs=76.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+... ... + .+ |+......+.+++..+.+|||||+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~--~~~---------------~---~~----t~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGE--IVT---------------T---IP----TIGFNVETVEYKNICFTVWDVGGQD 84 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSC--CEE---------------E---EE----ETTEEEEEEEETTEEEEEEECC---
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCC--ccc---------------c---CC----cCceeEEEEEECCEEEEEEECCCCH
Confidence 4679999999999999999996321 100 0 01 2222334466788999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
+|......+++.+|++++|+|+.+....... ..+..... .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp --CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 9988888899999999999999876433322 22222222 3789999999999864
No 101
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=147.97 Aligned_cols=116 Identities=19% Similarity=0.092 Sum_probs=84.6
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
.+...+|+++|++|+|||||+++|+..... .+...+++.......+.+++ ..+.+||
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 64 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFS---------------------GSYITTIGVDFKIRTVEINGEKVKLQIWD 64 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC------------------------CCTTTBSEEEEEEEEEETTEEEEEEEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCC---------------------CccCCCceeEEEEEEEEECCEEEEEEEEc
Confidence 456789999999999999999999632110 11233445555555566666 6899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
|||+.+|......+++.+|++++|+|+.++........| ..... .++|+++|+||+|+.
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp ETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 999999888888889999999999999986444443333 22222 358999999999975
No 102
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.55 E-value=2.5e-14 Score=146.30 Aligned_cols=113 Identities=13% Similarity=0.043 Sum_probs=81.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..+|+++|+.|+|||||+++|+...- .. .....|. ....+.+++..+.+|||||
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~------------------~~~t~~~----~~~~~~~~~~~~~i~Dt~G 74 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV--VH------------------TSPTIGS----NVEEIVINNTRFLMWDIGG 74 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC--EE------------------EECCSSS----SCEEEEETTEEEEEEEESS
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--Cc------------------cCCcCce----eeEEEEECCEEEEEEECCC
Confidence 3457899999999999999999974321 11 0011122 2234566889999999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+....+.. ..+.... ..++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp SGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 999888888889999999999999976433322 2233332 26789999999999864
No 103
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=6.4e-15 Score=152.14 Aligned_cols=155 Identities=17% Similarity=0.086 Sum_probs=111.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+..++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 16 ~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 94 (195)
T 1x3s_A 16 LKILII-GESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV 94 (195)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 678888 9999999999888877777766666666655555555544 5799999999999988899999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHh----cCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~----~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++........ .+..+.. .++|+++|+||+|+..... ......+.... ..+++++|
T Consensus 95 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~S 158 (195)
T 1x3s_A 95 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKH----------------SMLFIEAS 158 (195)
T ss_dssp EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT----------------TCEEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHc----------------CCEEEEec
Confidence 9998643322222 2233332 3679999999999954321 11111221111 13568899
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+..
T Consensus 159 a~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 159 AKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876643
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.54 E-value=2.2e-14 Score=144.46 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=77.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|+..... .+...++|+......+.+++..+.+|||||+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY---------------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS---------------------CC-----CCCCCEEEEEETTEEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee---------------------ccCCCCcceeeeEEEEEECCcEEEEEECCCccc
Confidence 67999999999999999999743110 112345566656666778889999999999988
Q ss_pred chH------HHHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 280 FTV------EVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~------e~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|.. -...+++ .+|++++|+|+... ......+..+.+.++|+++|.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 63 LTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp SSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred CCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 752 1233443 78999999999862 223334455556789999999999963
No 105
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=148.50 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=78.0
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
....+..+|+++|++|+|||||+++|+...-.. ......|.+.......+......+.|||
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D 83 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-------------------NISATLGVDFQMKTLIVDGERTVLQLWD 83 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC-----------------------------CEEEEEEETTEEEEEEEEE
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCc-------------------cCCCCccceeEEEEEEECCEEEEEEEEE
Confidence 334556899999999999999999997432100 0111223333333333333346799999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|...+..+++.+|++|+|+|+.++...+....| ..+. ..++|+++|+||+|+.
T Consensus 84 t~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp CTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 999999999999999999999999999876554443333 2222 2478999999999974
No 106
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.54 E-value=9.2e-15 Score=168.44 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=114.2
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCe-eEEEEeCCCCcch-------HHHHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDH-NINIIDTPGHVDF-------TVEVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~~-------~~~~~~~~~ 72 (1043)
.+|+.++ |..++||+|...+.+.... ..+..+|+|++.....+++.+. +++||||||+.++ ...+..+++
T Consensus 34 ~~kI~Iv-G~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 34 RRYIVVA-GRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CEEEEEE-CSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 3577777 9999999999877777665 5678999999999999998876 8999999999864 344678899
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
.+|++|+|+|+ +...++...+.++...++|+++|+||+|+......+..+++.+ .+. .++++
T Consensus 113 ~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~-------------~~g---~~v~~ 174 (423)
T 3qq5_A 113 RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYES-------------RYE---AKVLL 174 (423)
T ss_dssp SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSC-------------CTT---CCCCC
T ss_pred cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHH-------------HcC---CCEEE
Confidence 99999999998 5778888888888888999999999999986554322222111 111 36788
Q ss_pred eeecccCCcchHHHHHHhhccc
Q psy11896 153 ISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+||++|.|++++++.+...+..
T Consensus 175 vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 175 VSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CSSCCTTSTTTHHHHHHHHSCC
T ss_pred EECCCCCCHHHHHHHHHHhhhh
Confidence 9999999999999999987753
No 107
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.54 E-value=5.2e-14 Score=142.91 Aligned_cols=118 Identities=18% Similarity=0.125 Sum_probs=83.1
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.++..+|+++|+.|+|||||+++|+....... .....+.+.......+......+.+||||
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~ 72 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD-------------------CPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSS-------------------CTTSCCCCEEEEEEEETTEEEEEEEEECT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC-------------------CCCccceEEEEEEEEECCeEEEEEEEECC
Confidence 34578999999999999999999974321100 01122333333333333334689999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
|+.+|......+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 73 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp TGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 9999999999999999999999999976544433333 2222 2578999999999975
No 108
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.54 E-value=2.3e-14 Score=145.53 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=81.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|.+|+|||||+++|+...... .....++|.......+.+++..+.+|||||+.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI--------------------VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC--------------------CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce--------------------eeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 579999999999999999997432111 111345565555566777888899999999876
Q ss_pred chHH--------HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh---cCCCeEEEEeccCCC
Q psy11896 280 FTVE--------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e--------~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+... ...+++.+|++++|+|+.+.........+..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 65 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp CSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 5321 2245789999999999987765554444444433 368999999999964
No 109
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.54 E-value=3.4e-14 Score=142.85 Aligned_cols=116 Identities=16% Similarity=0.039 Sum_probs=81.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...-.. ..+...|.+.......+...+..+.+|||||+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 65 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHE-------------------FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-------------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-------------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCc
Confidence 34689999999999999999997421100 01122333443333333344678999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|+.+.........| ..+.. .++|+++|.||+|+.
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 99998888999999999999999876443333222 33332 367899999999975
No 110
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.54 E-value=7.7e-15 Score=182.44 Aligned_cols=164 Identities=23% Similarity=0.243 Sum_probs=114.0
Q ss_pred ccceeeeeecccccccCCcc----------------ccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG----------------AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE 66 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~----------------~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 66 (1043)
+|+.++ |..++||+|...+ +.+|..+.|+++|+|++.....+...+.+++|||||||.+|...
T Consensus 297 lnIvII-GhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~ 375 (1289)
T 3avx_A 297 VNVGTI-GHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKN 375 (1289)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHH
T ss_pred eEEEEE-cCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHH
Confidence 466777 9999999987221 24577788999999999988888888899999999999999999
Q ss_pred HHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 67 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 67 ~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+..+++.+|++|+|+|++++...++.+++..+...++| +|+++||+|+.+ +. +..+.+.+.+..++...++. .
T Consensus 376 mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d~-e~le~i~eEi~elLk~~G~~----~ 449 (1289)
T 3avx_A 376 MITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD-DE-ELLELVEMEVRELLSQYDFP----G 449 (1289)
T ss_dssp HHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-CH-HHHHHHHHHHHHHHHHTTSC----T
T ss_pred HHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-ch-hhHHHHHHHHHHHHHhcccc----c
Confidence 99999999999999999999999999988888888999 789999999975 22 22222222222222222211 1
Q ss_pred cceeeeeeeeccc--------CCcchHHHHHHhhcc
Q psy11896 146 EYIRNIGISAHID--------SGKTTLTERILFYTG 173 (1043)
Q Consensus 146 ~~~~ii~iSa~~g--------~Gi~~L~~~l~~~l~ 173 (1043)
...+++++||++| .|+++|++.+..+++
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 1347899999999 468888888877655
No 111
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.54 E-value=1.8e-14 Score=148.42 Aligned_cols=118 Identities=19% Similarity=0.132 Sum_probs=83.1
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.+...+|+++|++|+|||||+++|+....... .....|++..........+...+.+||||
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~ 79 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA-------------------FVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-------------------CCCCCCCEEEEEEEEETTEEEEEEEEECC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCC-------------------cCCceeEEEEEEEEEECCeEEEEEEEeCC
Confidence 44578999999999999999999974321100 01122444443333333445689999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|+.+|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 80 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp SCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 9999988888889999999999999875433333222 33333 378999999999975
No 112
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.53 E-value=3.1e-14 Score=143.23 Aligned_cols=116 Identities=17% Similarity=0.084 Sum_probs=81.6
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...... ......|.+.......+......+.+|||||+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 65 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDP-------------------NINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCT-------------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-------------------CCCCceeEEEEEEEEEECCeEEEEEEEcCCCc
Confidence 34789999999999999999997432100 01122344443333333333478999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 99988888899999999999999976544443333 33332 467899999999985
No 113
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.53 E-value=2.3e-15 Score=162.97 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=118.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH----------HHHHHh-
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV----------EVERAL- 71 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~----------~~~~~~- 71 (1043)
.|+.++ |..++||+|...+.+.........||+|++.....+.+++..+.||||||+.++.. .+..++
T Consensus 2 ~kI~lv-G~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLI-GNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 467777 99999999998888877777888899999999999999999999999999987653 344555
Q ss_pred -hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 72 -RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 72 -~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+.+|++|+|+|++. ......+..++.+.++|+++|+||+|+.... .....+.+.+.++ .+
T Consensus 81 ~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg----------------~~ 142 (256)
T 3iby_A 81 DLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLG----------------CS 142 (256)
T ss_dssp HSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHC----------------SC
T ss_pred hCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC----------------CC
Confidence 78999999999985 3455566777888899999999999985321 1111233433321 36
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++++||++|.|+++|++.+...
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 143 VIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEECBGGGTBSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 8999999999999999999764
No 114
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.53 E-value=4.3e-14 Score=147.25 Aligned_cols=118 Identities=20% Similarity=0.135 Sum_probs=82.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
+...+|+++|++|+|||||+++|+...-... .....|++.......+......+.+|||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G 66 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPA-------------------FVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSC-------------------CCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-------------------cCCccceeEEEEEEEECCeEEEEEEEECCC
Confidence 3468899999999999999999974321100 001223333333333333356899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
+.+|...+..+++.+|++|+|+|+.++........| ..+.. .+.|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 67 LERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp SGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred chhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 999999888899999999999999875443333333 33333 4789999999999863
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.53 E-value=2.2e-14 Score=148.25 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=108.8
Q ss_pred CccceeeeeecccccccCCccccCCCh--hhhhhcCCccccceEEEEecCeeEEEEeCCC----------CcchHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM--ELERQRGITIQSAATYTLWKDHNINIIDTPG----------HVDFTVEVER 69 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~--~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG----------~~~~~~~~~~ 69 (1043)
.+|+.++ |..++||+|...+...+.+ .....+|+|++.....+ +.++.+||||| +..+...+..
T Consensus 23 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 23 LPEIALA-GRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCEEEEE-EBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 4677777 9999999999777666543 34567788887665433 44799999999 4456666667
Q ss_pred Hhhhc---CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCc
Q psy11896 70 ALRVL---DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 70 ~~~~a---D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
+++.+ |++++|+|++++....+..++.++...++|+++|+||+|+.... .....+.+.+.+. ..
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~------------~~ 166 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLN------------ID 166 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT------------CC
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHc------------cc
Confidence 77776 99999999998888888777888888899999999999997532 2223344443332 01
Q ss_pred cceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
...+++++||++|.|++++++.+...+
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 224678999999999999999987654
No 116
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=7.6e-15 Score=171.70 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=116.1
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCc----------chHHH-HHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHV----------DFTVE-VERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~----------~~~~~-~~~~ 70 (1043)
+|+.++ |..++||+|...+.+.+... .+..+|+|++.....+.+++..+.||||||+. .|... ...+
T Consensus 176 ~ki~lv-G~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 254 (436)
T 2hjg_A 176 IQFCLI-GRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 254 (436)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHH
T ss_pred cEEEEE-cCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHH
Confidence 577788 99999999988777666553 67789999999999999999999999999983 33333 3468
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH---HHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP---YRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
++.+|++++|+|++++.+.++..++..+...++|+++|+||+|+..... ++..+.+.+.+. ...+
T Consensus 255 ~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~------------~~~~ 322 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ------------FLDY 322 (436)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG------------GGTT
T ss_pred HHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc------------cCCC
Confidence 8999999999999999999998888888888999999999999975432 223333333321 1233
Q ss_pred eeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+++++||++|.|++++++.+.....
T Consensus 323 ~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 323 APILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp SCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHH
Confidence 57899999999999999998876543
No 117
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.53 E-value=7.5e-15 Score=147.88 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=106.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH------HHHHHHhh--hc
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT------VEVERALR--VL 74 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~------~~~~~~~~--~a 74 (1043)
+|+.++ |..++||+|.........+.....||+|++.....+.+++..+.+|||||+.++. .....+++ .+
T Consensus 4 ~~v~lv-G~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 4 YEIALI-GNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 677888 9999999999877776666667789999999888888889999999999998763 23344554 79
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|++++|+|++.. ......+..+...++|+++|+||+|+.... .....+.+.+.++ .+++++
T Consensus 83 ~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 144 (165)
T 2wji_A 83 DLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG----------------VKVVPL 144 (165)
T ss_dssp SEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------SCEEEC
T ss_pred CEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhC----------------CCEEEE
Confidence 999999998752 222334445556789999999999984211 0001122322221 256889
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 145 SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 145 SAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp BGGGTBSHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 9999999999999987643
No 118
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.53 E-value=2.4e-14 Score=146.35 Aligned_cols=116 Identities=19% Similarity=0.108 Sum_probs=61.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
+...+|+++|++|+|||||+++|+..... .+..+.++.......+.+++ ..+.+|||
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN---------------------STFISTIGIDFKIRTIELDGKRIKLQIWDT 64 (183)
T ss_dssp SEEEEEEEECCCCC-------------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC---------------------CCCCCcccceeEEEEEEECCEEEEEEEEcC
Confidence 45689999999999999999999632100 11122233333334455555 78999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
||+.+|.......++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp ---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred CCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 99999888777888999999999999975433332222 33333 3789999999999863
No 119
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.53 E-value=8.9e-15 Score=149.61 Aligned_cols=154 Identities=15% Similarity=0.024 Sum_probs=87.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..|+++.+.....+.+++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 9 ~ki~v~-G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (183)
T 2fu5_C 9 FKLLLI-GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV 87 (183)
T ss_dssp EEEEEE-CCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEE
Confidence 678888 9999999999988888887777888888777777777776 6899999999999988888899999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+.... ..+..+.. .++|+++|+||+|+.... .......+.+.+ . .+++++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~~~S 151 (183)
T 2fu5_C 88 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY-------------G---IKFMETS 151 (183)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-------------T---CEEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHc-------------C---CeEEEEe
Confidence 999864332222 22223332 368999999999996531 111122222211 1 3578899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 152 a~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 152 AKANINVENAFFTLARDIK 170 (183)
T ss_dssp C---CCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 120
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.53 E-value=5.9e-14 Score=143.78 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=82.9
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
++..+|+++|+.|+|||||+++|+...... .....++.......+.+++ ..+.+|||
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 66 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD---------------------DSNHTIGVEFGSKIINVGGKYVKLQIWDT 66 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT---------------------TCCCCSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC---------------------CCCCccceEEEEEEEEECCEEEEEEEEeC
Confidence 456899999999999999999997432110 1122233333334445555 68999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH----HHHHhcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~----~~~~~~~~p~ivviNKiD~~ 332 (1043)
||+.+|...+..+++.+|++++|+|+.+....+....| ......++|+++|+||+|+.
T Consensus 67 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 67 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp CCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999999888899999999999999975544433333 22223578999999999975
No 121
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.53 E-value=1e-13 Score=140.70 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=81.3
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
.....+|+++|++|+|||||+++|+..... .+..+.++.......+.+++ ..+.+||
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 62 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFD---------------------TQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCC---------------------C----CCSEEEEEEEEEETTEEEEEEEEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCC---------------------CCCCCceeeeEEEEEEEECCEEEEEEEEe
Confidence 345678999999999999999999733210 01112222333333444555 5899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---h----cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---R----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~----~~~p~ivviNKiD~~ 332 (1043)
|||+.+|.......++.+|++++|+|+.+....+....| .... . .++|+++|+||+|+.
T Consensus 63 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp CCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred CCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999999998888889999999999999976544333322 2221 1 578999999999986
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.53 E-value=1.4e-14 Score=158.07 Aligned_cols=110 Identities=22% Similarity=0.276 Sum_probs=81.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+..... .....|+|+......+.+ +..+.+|||||+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~---------------------v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~ 60 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR---------------------VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIY 60 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC---------------------CCSSSCCCCSCEEEECTT-CTTEEEEECCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc---------------------ccCCCCCcEEEEEEEEec-CCeEEEEECCCcC
Confidence 468999999999999999999743211 112347777766666666 7899999999998
Q ss_pred CchH------HHHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFTV------EVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~------e~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+|.. -...+++ .+|++++|+|+... ......+.++.+.++|+++|+||+|+.
T Consensus 61 ~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 61 SMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp CSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred ccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 8852 2334444 59999999999862 233444566667899999999999963
No 123
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.53 E-value=2.5e-14 Score=147.71 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=80.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|.... .. ....|+......+.+++..+.+|||||+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~--~~----------------------~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDR--LA----------------------TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSC--CC----------------------CCCCCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--CC----------------------ccccCCCCCeEEEEECCEEEEEEECCCCHH
Confidence 579999999999999999997321 10 001122233455677889999999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
|......+++.+|++++|+|+.++....... .+.... ..+.|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 80 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 8877777889999999999999864333222 222222 35789999999999975
No 124
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=3.9e-14 Score=144.21 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=74.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
+...+|+++|++|+|||||+++|+....... .....++.......+..++ ..+.+|||
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt 67 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG--------------------TFISTVGIDFRNKVLDVDGVKVKLQMWDT 67 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC--------------------CCCCCCSCEEEEEEEEETTEEEEEEEEEC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC--------------------CcCCceeeEEEEEEEEECCEEEEEEEEeC
Confidence 3457899999999999999999974321110 0111222222222334444 58999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
||+.+|...+..+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 68 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp CCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 99999988888889999999999999975443332222 22222 5789999999999864
No 125
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.53 E-value=4.6e-14 Score=141.86 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=79.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|+.|+|||||+++|+....... .....|.+.......+......+.+|||||+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 64 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAEN-------------------KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT-------------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC-------------------CCCccceeEEEEEEEECCEEEEEEEEECCCChh
Confidence 5799999999999999999974321100 011223333333333322345899999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~~ 333 (1043)
|.......++.+|++++|+|+.+.........| .... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 998889999999999999999976443333322 2222 24789999999999753
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.53 E-value=1.2e-14 Score=171.04 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=119.8
Q ss_pred ccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCC----------CcchHHH-HHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPG----------HVDFTVE-VERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG----------~~~~~~~-~~~~ 70 (1043)
+|+.++ |..++||+|...+..... ...+..+|+|++.....+.+++.+++|||||| ++++... ...+
T Consensus 196 ~ki~iv-G~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 274 (456)
T 4dcu_A 196 IQFCLI-GRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 274 (456)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH
T ss_pred ceeEEe-cCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH
Confidence 567777 999999999877666543 55678899999999999999999999999999 4555544 3458
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH---HHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP---YRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...+. ++..+.+.+.+. ...+
T Consensus 275 ~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~------------~~~~ 342 (456)
T 4dcu_A 275 IDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ------------FLDY 342 (456)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCG------------GGTT
T ss_pred HhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcc------------cCCC
Confidence 8999999999999999999999999988889999999999999975432 222333333221 1234
Q ss_pred eeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+++++||++|.|+++|++.+.....
T Consensus 343 ~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 343 APILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp SCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 57899999999999999999986553
No 127
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.53 E-value=2.8e-14 Score=142.91 Aligned_cols=155 Identities=12% Similarity=0.002 Sum_probs=109.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
+|+.++ |..++||+|...+...+.+.. ..| |+......+.+++.++.+|||||+.++...+..+++.+|++++|+|
T Consensus 1 ~ki~~~-G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMV-GLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHCSSC-CCC--CSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEE-CCCCCCHHHHHHHHHcCCcCc-ccC--cCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 577888 999999999976665555432 333 5556667777888999999999999999999999999999999999
Q ss_pred CCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++..+.... ..+..+.. .++|+++|+||+|+.+.... +++.+.++.. .. . ....+++++||++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~-----~~--~-~~~~~~~~~Sa~~ 145 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGLH-----SL--R-HRNWYIQATCATS 145 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGG-----GC--S-SCCEEEEECBTTT
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCH---HHHHHHhCcc-----cc--c-CccEEEEEcccCC
Confidence 9865332222 22222222 37899999999999754321 2222222100 00 0 1124678999999
Q ss_pred cCCcchHHHHHHhhc
Q psy11896 158 DSGKTTLTERILFYT 172 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l 172 (1043)
|.|++++++.+...+
T Consensus 146 ~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 146 GDGLYEGLDWLSNQL 160 (164)
T ss_dssp TBTHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998654
No 128
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.53 E-value=1.1e-14 Score=148.07 Aligned_cols=155 Identities=11% Similarity=-0.004 Sum_probs=114.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC---eeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD---HNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...+.+..+..|.++.+.....+.+++ .++.+|||||+.++...+..+++.+|++|
T Consensus 6 ~~ki~v~-G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 6 QLKIVVL-GDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred eEEEEEE-CcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 3678888 9999999999888887777777788887777777788776 68999999999999888999999999999
Q ss_pred EEEeCCCCCchhHHH-HHHHHHh-----cCCC-EEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 79 LVLCAVGGVQSQTLT-VNRQMKR-----YDVP-CIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~-~~~~l~~-----~~~p-iilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+|+|+++..+..... .+..+.. .+.| +++|+||+|+.... ..+....+.+.. ..+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~ 148 (178)
T 2hxs_A 85 LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN----------------GFS 148 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH----------------TCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc----------------CCc
Confidence 999998643322222 2222322 2567 78999999986421 111122222211 135
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++++||++|.|++++++.+...+.
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 149 SHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987654
No 129
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.53 E-value=4.4e-15 Score=153.55 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=106.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcC---------CccccceE-----EEEecCeeEEEEeCCCCcchHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRG---------ITIQSAAT-----YTLWKDHNINIIDTPGHVDFTVEV 67 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G---------~T~~~~~~-----~~~~~~~~i~liDTPG~~~~~~~~ 67 (1043)
.+|+.++ |..++||+|.. +++.+.+.....+. .|+...+. .+.....++.||||||+.++...+
T Consensus 14 ~~ki~vv-G~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (198)
T 3t1o_A 14 NFKIVYY-GPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR 91 (198)
T ss_dssp EEEEEEE-CSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH
T ss_pred ccEEEEE-CCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHH
Confidence 3688888 99999999997 77776666554331 12221111 111234579999999999999999
Q ss_pred HHHhhhcCEEEEEEeCCCCCchhHHHHH----HHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccccc
Q psy11896 68 ERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNES 138 (1043)
Q Consensus 68 ~~~~~~aD~iIlVvDa~~~~~~~~~~~~----~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~ 138 (1043)
..+++.+|++|+|+|++++....+...+ .++.. .++|+++|+||+|+.+.... +++.+.+.
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~------- 161 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPV---EMVRAVVD------- 161 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCH---HHHHHHHC-------
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCH---HHHHHHHH-------
Confidence 9999999999999999865444443333 33333 47899999999999764322 22222211
Q ss_pred ccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 139 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 139 l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.....+++++||++|.|++++++.+...+-
T Consensus 162 -----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 162 -----PEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp -----TTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred -----hcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 112226788999999999999999876543
No 130
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.53 E-value=8e-14 Score=141.51 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=79.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|+.|+|||||+++|+...... .....++.......+.+++ ..+.+|||||
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G 72 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDN---------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS---------------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC---------------------CCCCceeeEEEEEEEEECCeEEEEEEEECCC
Confidence 4689999999999999999997322110 1122233333334444554 5899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
+.+|...+..+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp SGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 999998888999999999999999875333322222 2222 2478999999999975
No 131
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.52 E-value=8.3e-14 Score=143.40 Aligned_cols=115 Identities=14% Similarity=0.028 Sum_probs=79.5
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee-eEEEEec----------
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-ATYTLWK---------- 265 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~---------- 265 (1043)
+...+|+++|++|+|||||+++|+....... ....+..... ...+.+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 67 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSK---------------------FITTVGIDFREKRVVYRANGPDGAVGRG 67 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS---------------------CCCCCSEEEEEEEEEECTTSCCCSSCCC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcC---------------------cccccceeeeeEEEEEecCCcccccccC
Confidence 4567899999999999999999974321000 0001111111 1122222
Q ss_pred -CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 266 -DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 266 -~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
...+.+|||||+.+|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred cEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 35899999999999999999999999999999999876544443332 22222 578999999999975
No 132
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.52 E-value=5.3e-14 Score=146.31 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=75.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|.... .. . . ..|+......+.+++..+.+|||||+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~--~~---------------~---~----~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDR--LG---------------Q---H----VPTLHPTSEELTIAGMTFTTFDLGGHIQ 81 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC------------------------------CCCCCSCEEEEETTEEEEEEEECC---
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC--CC---------------c---c----CCCCCceeEEEEECCEEEEEEECCCcHh
Confidence 579999999999999999996321 10 0 0 0122223345677889999999999998
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
|...+..+++.+|++++|+|+.+........ .+.... ..++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 82 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp -CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 8877777889999999999998764333222 222222 25789999999999975
No 133
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.52 E-value=3.3e-14 Score=145.88 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=81.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+... ... + ..|+......+.+++..+.+|||||+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~---------------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~ 72 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDT---------------I-------SPTLGFNIKTLEHRGFKLNIWDVGGQ 72 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSS---------------C-------CCCSSEEEEEEEETTEEEEEEEECCS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCc---------------c-------cccCccceEEEEECCEEEEEEECCCC
Confidence 34789999999999999999997432 100 0 01222223445668899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
.+|...+..+++.+|++++|+|+.+....... ..+..... .+.|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 88887777888999999999999876433322 22333322 4789999999999874
No 134
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.52 E-value=9.9e-14 Score=144.04 Aligned_cols=64 Identities=22% Similarity=0.171 Sum_probs=52.1
Q ss_pred eeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH-HhcCCCeEEEEeccC
Q psy11896 267 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM-KRYDVPCIAFINKLD 330 (1043)
Q Consensus 267 ~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~-~~~~~p~ivviNKiD 330 (1043)
..+.||||||+.+|...+..+++.+|++++|+|+.++...+....| ..+ ...+.|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 7899999999999998899999999999999999987544443333 222 335689999999999
No 135
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.52 E-value=4.6e-14 Score=142.03 Aligned_cols=113 Identities=19% Similarity=0.079 Sum_probs=77.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|++|+|||||+++|+...-.. .....++.......+.+++ ..+.+|||||
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 61 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP---------------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC----------------------------CCEEEEEEESSSCEEEEEEECCTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC---------------------CCCCccceeEEEEEEEECCEEEEEEEEeCCC
Confidence 4789999999999999999997432100 0112222222333344444 5789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
+.+|...+...++.+|++++|+|+.+.........| ..+.. .+.|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp GGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred ChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 999888888889999999999999875443333222 22322 378999999999984
No 136
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.52 E-value=2.1e-14 Score=168.27 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=69.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+..... ......|+|.+.....+.++++.++||||||+.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a--------------------~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERA--------------------IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--------------------------------------CEEEEETTEEEEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc--------------------ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 46999999999999999999743211 1233567888887788889999999999999988
Q ss_pred chHHHHH--------HhHhcCeEEEEEeCCCCcch----HHHHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 280 FTVEVER--------ALRVLDGAILVLCAVGGVQS----QTLTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 280 f~~e~~~--------~l~~~D~~ilVvda~~g~~~----~t~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
+...+.. +++.+|++++|+|+.++... ....++..+. ++|+++|+||+|+...
T Consensus 294 ~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 294 AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp --------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 7655432 45889999999999998776 4444444433 7899999999998753
No 137
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=3.4e-14 Score=146.67 Aligned_cols=118 Identities=21% Similarity=0.157 Sum_probs=85.2
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCC
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 275 (1043)
.+...+|+++|+.|+|||||+++|+...-... .....|++...........+..+.|||||
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~ 80 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPA-------------------FVSTVGIDFKVKTVYRHEKRVKLQIWDTA 80 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCC-------------------EEEEETTTEEEEEEEETTTTEEEEEECHH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcc-------------------cCCCeeeEEEEEEEEECCEEEEEEEEeCC
Confidence 44568999999999999999999974321110 01122444444444455567889999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|+.+|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 81 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 81 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred ChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999999999999999999999999875433332223 33333 478999999999975
No 138
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.52 E-value=2.3e-14 Score=147.59 Aligned_cols=157 Identities=13% Similarity=0.022 Sum_probs=110.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
+|+.++ |..++||+|...+...+.+..+..| |+......+...+..+.||||||+.++...+..+++.+|++|+|+|
T Consensus 23 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 99 (188)
T 1zd9_A 23 MELTLV-GLQYSGKTTFVNVIASGQFNEDMIP--TVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD 99 (188)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred cEEEEE-CCCCCCHHHHHHHHHcCCCCCccCC--CCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEE
Confidence 677888 9999999999777776666544444 4444455677888999999999999999899999999999999999
Q ss_pred CCCCCchhHH-HHHH-HHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGGVQSQTL-TVNR-QMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~~~~~~~-~~~~-~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++....... ..+. .+. ..++|+++|+||+|+...... +++.+.+... .. .....+++.+||++
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~-----~~---~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 100 AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLS-----AI---QDREICCYSISCKE 168 (188)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGG-----GC---CSSCEEEEECCTTT
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChh-----hh---ccCCeeEEEEECCC
Confidence 9864333222 2222 222 257899999999999764221 2222222100 00 01224678999999
Q ss_pred cCCcchHHHHHHhhcc
Q psy11896 158 DSGKTTLTERILFYTG 173 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l~ 173 (1043)
|.|++++++.+...+.
T Consensus 169 g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSK 184 (188)
T ss_dssp CTTHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
No 139
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.51 E-value=2e-14 Score=148.96 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=111.4
Q ss_pred CccceeeeeecccccccCCccccCCChhh-hhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMEL-ERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~-e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
.+|+.++ |..++||+|...+...+.+.. +..+ |+......+...+..+.||||||+.++...+..+++.+|++|+|
T Consensus 17 ~~ki~v~-G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 93 (199)
T 4bas_A 17 KLQVVMC-GLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93 (199)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 3677777 999999999988888777765 4344 44455566778889999999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHhc-----------CCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKRY-----------DVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~~-----------~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+|+++..+.... ..+..+... ++|+++|+||+|+..... .++.+.+.... +.. ...
T Consensus 94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~--------~~~---~~~ 162 (199)
T 4bas_A 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT--------LMG---DHP 162 (199)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH--------HHT---TSC
T ss_pred EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh--------hcc---CCe
Confidence 999975443332 222333222 789999999999976432 22222221100 000 122
Q ss_pred eeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+++.+||++|.|++++++.+...+.
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 46789999999999999999987654
No 140
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=148.84 Aligned_cols=154 Identities=16% Similarity=0.060 Sum_probs=108.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 27 ~ki~vv-G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV 105 (192)
T 2il1_A 27 LQVIII-GSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 105 (192)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 577777 9999999999888888888777788887777777777766 4799999999999999999999999999999
Q ss_pred EeCCCCCchhHHHHH-HHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~~-~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+......| ..+.. .++|+++|+||+|+..... .+..+.+.+. ....+++.+|
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~---------------~~~~~~~~~S 170 (192)
T 2il1_A 106 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ---------------ITGMRFCEAS 170 (192)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT---------------STTCEEEECB
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh---------------cCCCeEEEEe
Confidence 999865443332222 22322 3789999999999864211 1111222211 1124678899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 171 A~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 171 AKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 141
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.51 E-value=1.2e-13 Score=141.77 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=74.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|++|+|||||+++|+...... ...+++.......+.+++ ..+.+|||||
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G 61 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVD----------------------EYDPTIEDSYRKQVVIDGETCLLDILDTAG 61 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCC----------------------CCCTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCC----------------------CCCCCchheEEEEEEECCcEEEEEEEECCC
Confidence 4689999999999999999997432100 011111122222333444 4578899999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH----HhcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~----~~~~~p~ivviNKiD~~ 332 (1043)
+.+|......+++.+|++++|+|+.+.........| ..+ ...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp C---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 999998889999999999999999975433332222 222 23478999999999986
No 142
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.51 E-value=1.9e-14 Score=148.08 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=79.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+... ... + .. |+......+.+++..+.+|||||+.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~--~~~---------------~---~~----t~~~~~~~~~~~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGD--VVT---------------T---VP----TVGVNLETLQYKNISFEVWDLGGQT 77 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSC--CEE---------------E---CS----STTCCEEEEEETTEEEEEEEECCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC--CCC---------------c---CC----CCceEEEEEEECCEEEEEEECCCCH
Confidence 4679999999999999999996321 100 0 01 1112233466778999999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh----cCCCeEEEEeccCCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~----~~~p~ivviNKiD~~~~ 334 (1043)
+|......+++.+|++++|+|+.+.-..... ..+..... .+.|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 78 GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred hHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 8887777788999999999999876433322 22222222 47899999999998753
No 143
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=3.1e-14 Score=145.43 Aligned_cols=112 Identities=21% Similarity=0.108 Sum_probs=76.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+.... .. ...|+......+.+++..+.+|||||+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~----------------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~ 72 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV--VT----------------------TKPTIGFNVETLSYKNLKLNVWDLGGQ 72 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE--EE----------------------ECSSTTCCEEEEEETTEEEEEEEEC--
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc--Cc----------------------cCCcCccceEEEEECCEEEEEEECCCC
Confidence 347899999999999999999963211 00 001111223345667899999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHH----hcCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
.+|...+..+++.+|++++|+|+.+....+.. ..+.... ..+.|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 73 TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp --CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 99888888888999999999999876433322 2233332 35789999999999864
No 144
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=2.5e-14 Score=146.99 Aligned_cols=158 Identities=15% Similarity=0.023 Sum_probs=108.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. +..| |+......+.+++.++.+|||||+.++...+..+++.+|++|+|+
T Consensus 16 ~~~i~v~-G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 91 (187)
T 1zj6_A 16 EHKVIIV-GLDNAGKTTILYQFSMNEVV-HTSP--TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 91 (187)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHTTSCE-EEEC--CSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCCC-cCcC--CCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 4677888 99999999998777766554 3333 555556677788999999999999998888889999999999999
Q ss_pred eCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..+.... ..+..+.. .++|+++|+||+|+.+.... +++.+.+... .+ . ....+++.+||+
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~----~~---~-~~~~~~~~~Sa~ 160 (187)
T 1zj6_A 92 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLKLT----SI---K-DHQWHIQACCAL 160 (187)
T ss_dssp ETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGG----GC---C-SSCEEEEECBTT
T ss_pred eCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCH---HHHHHHhChh----hh---c-CCCcEEEEccCC
Confidence 99876433322 22222322 57899999999999753222 2222222100 00 0 112367899999
Q ss_pred ccCCcchHHHHHHhhccc
Q psy11896 157 IDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~~ 174 (1043)
+|.|++++++.+...+..
T Consensus 161 ~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 161 TGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTBTHHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999876653
No 145
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.51 E-value=1.5e-15 Score=177.97 Aligned_cols=158 Identities=27% Similarity=0.290 Sum_probs=123.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
.++.++ |..++||||...+...........+|+|.+.....+.+++.+++|||||||.+|...+..+++.+|++|+|+|
T Consensus 5 ~~V~Iv-Ghvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVd 83 (501)
T 1zo1_I 5 PVVTIM-GHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVA 83 (501)
T ss_dssp CCEEEE-ESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEee
Confidence 456666 9999999998655544444455668999999888888888999999999999999998889999999999999
Q ss_pred CCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccc-cCCCCccceeeeeeeecccCCc
Q psy11896 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESL-SEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 83 a~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
++++...++.+.+..+...++|+++++||+|++..+.++..+. + ...++ ...+ ....+++++||++|.|+
T Consensus 84 a~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~----l----~~~~~~~~~~-~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 84 ADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNE----L----SQYGILPEEW-GGESQFVHVSAKAGTGI 154 (501)
T ss_dssp TTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCC----C----CCCCCCTTCC-SSSCEEEECCTTTCTTC
T ss_pred cccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHH----H----HHhhhhHHHh-CCCccEEEEeeeeccCc
Confidence 9999999999999888889999999999999976443211111 1 11011 1111 12357899999999999
Q ss_pred chHHHHHHh
Q psy11896 162 TTLTERILF 170 (1043)
Q Consensus 162 ~~L~~~l~~ 170 (1043)
++|++.+..
T Consensus 155 ~eLle~I~~ 163 (501)
T 1zo1_I 155 DELLDAILL 163 (501)
T ss_dssp TTHHHHTTT
T ss_pred chhhhhhhh
Confidence 999998864
No 146
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.51 E-value=1.1e-13 Score=140.70 Aligned_cols=115 Identities=20% Similarity=0.164 Sum_probs=78.7
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
..+..+|+++|+.|+|||||+++|+...... + ...++.......+.+++ ..+.+||
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~------~~~t~~~~~~~~~~~~~~~~~~~~~D 63 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVS----------------D------YDPTIEDSYTKICSVDGIPARLDILD 63 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCS----------------S------CCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCcc----------------c------cCCCcCceEEEEEEECCEEEEEEEEE
Confidence 3456899999999999999999998431100 0 01111111112344444 5788999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-----HHHHHHhcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|.......++.+|++++|+|+.+........ +++.....++|+++|+||+|+.
T Consensus 64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp CCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred CCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999888888899999999999998743322221 1222234578999999999975
No 147
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.51 E-value=3.4e-14 Score=144.81 Aligned_cols=155 Identities=15% Similarity=0.028 Sum_probs=112.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 13 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 91 (181)
T 2efe_B 13 AKLVLL-GDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV 91 (181)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEE
Confidence 677777 9999999999888887877777777766666555666654 5799999999999999999999999999999
Q ss_pred EeCCCCCchhH-HHHHHHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~-~~~~~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++...... ...+..+.. .++|+++|+||+|+..... ......+.... ..+++++|
T Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~S 155 (181)
T 2efe_B 92 FDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN----------------GLFFMETS 155 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT----------------TCEEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc----------------CCEEEEEE
Confidence 99986443222 222333333 2678999999999964321 11112221111 13578999
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+..
T Consensus 156 a~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 156 AKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp SSSCTTHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876653
No 148
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=140.14 Aligned_cols=115 Identities=19% Similarity=0.132 Sum_probs=70.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+...... .....|.+.......+......+.+|||||+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 63 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERD--------------------LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-------------------------CCCSSSSEEEEEEEETTEEEEEEEECCC---
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcc--------------------ccCccccceeEEEEEECCEEEEEEEEecCCCC
Confidence 4689999999999999999997432110 01123444433332222223578999999998
Q ss_pred C--chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 279 D--FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 d--f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
+ +.......++.+|++++|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp ----CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred ccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 8 4444555668899999999998744333222 2233333 3789999999999863
No 149
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.51 E-value=1.8e-14 Score=146.23 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=110.3
Q ss_pred CccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcchH--------HHHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT--------VEVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~--------~~~~~~~~ 72 (1043)
.+|+.++ |..++||+|..........+ ....+|+|++.....+.+++..+.+|||||+.++. .....+++
T Consensus 4 ~~ki~iv-G~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIA-GRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 3678888 99999999987666554432 45678999999888899999999999999997521 12335689
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
.+|++++|+|+++..+......+..+.. .++|+++|+||+|+..... .+. .....+
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------------~~~---------~~~~~~ 141 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------------GMS---------EVNGHA 141 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------------EEE---------EETTEE
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------------hhh---------hccCCc
Confidence 9999999999987665555444444433 2689999999999853210 000 012246
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++++||++|.|++++++.+...+.
T Consensus 142 ~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 142 LIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHC-
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999987654
No 150
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.50 E-value=6.8e-14 Score=144.47 Aligned_cols=119 Identities=15% Similarity=0.090 Sum_probs=82.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
..++..+|+++|++|+|||||+++|+....... .....|.+.......+...+..+.+|||
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt 81 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-------------------SRTTIGVEFSTRTVMLGTAAVKAQIWDT 81 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-------------------CCCCSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-------------------CCCccceeEEEEEEEECCEEEEEEEEeC
Confidence 345678999999999999999999974321110 0011233333333333334578999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
||+.+|......+++.+|++|+|+|+...........| ..+.. .++|+++|+||+|+.
T Consensus 82 ~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp SCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred CCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 99999988888999999999999999875443332222 33322 378999999999975
No 151
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=148.99 Aligned_cols=154 Identities=14% Similarity=0.045 Sum_probs=117.4
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+++|.+.....+.+++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 17 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 95 (196)
T 3tkl_A 17 FKLLLI-GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 95 (196)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence 677888 9999999999888888888888889999888888888877 5799999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++....... ..+..+.. .++|+++|+||+|+..... ......+...+ . .+++++|
T Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~~~S 159 (196)
T 3tkl_A 96 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-------------G---IPFLETS 159 (196)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-------------T---CCEEEEC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHc-------------C---CcEEEEe
Confidence 999864332222 22222322 3789999999999865321 11222222221 1 2568899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 160 a~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 160 AKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 152
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=8e-14 Score=145.35 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=82.1
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINII 272 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~li 272 (1043)
..+...+|+++|.+|+|||||+++|+...-. .+....++.+.....+.+++ ..+.+|
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~ 80 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFP---------------------PGQGATIGVDFMIKTVEINGEKVKLQIW 80 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCC---------------------TTCCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCC---------------------CCCCCccceeEEEEEEEECCEEEEEEEE
Confidence 3456789999999999999999999742110 01112222333333445555 579999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
||||+.+|......+++.+|++++|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999999988888889999999999999875443322222 2222 2468999999999975
No 153
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=147.03 Aligned_cols=158 Identities=12% Similarity=-0.006 Sum_probs=110.7
Q ss_pred CccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
.+|+.++ |..++||+|...+...+. +..+ ...|+......+.+++.++.||||||+.++...+..+++.+|++|+|
T Consensus 21 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 21 EVHVLCL-GLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4678888 999999999876666554 2333 34566666777888889999999999999988888999999999999
Q ss_pred EeCCCCCchhH--HHHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQT--LTVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~--~~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++..+... ..+...+.. .++|+++|+||+|+.+.... +++.+.+. +.. ......+++.+
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~-------~~~-~~~~~~~~~~~ 166 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS---VKVSQLLC-------LEN-IKDKPWHICAS 166 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH---HHHHHHHT-------GGG-CCSSCEEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCH---HHHHHHhC-------hhh-ccCCceEEEEc
Confidence 99986432222 222222332 47899999999999754221 22222221 000 00112467899
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 167 Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 167 DAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp BTTTTBTHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 154
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.50 E-value=4.4e-14 Score=143.88 Aligned_cols=115 Identities=18% Similarity=0.127 Sum_probs=70.2
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEc
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIID 273 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liD 273 (1043)
....+|+++|+.|+|||||+++|+...-.. +....++.......+.++ ...+.+||
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 64 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ---------------------QYKATIGADFLTKEVTVDGDKVATMQVWD 64 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT---------------------TC---CCCSCEEEEECCSSSCCEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc---------------------ccCCccceEEEEEEEEEcCCcEEEEEEEE
Confidence 446889999999999999999997432110 001112222222333333 36899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh-------cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR-------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~-------~~~p~ivviNKiD~~ 332 (1043)
|||+.+|.......++.+|++++|+|+.+.........|. .+.. .++|+++|+||+|+.
T Consensus 65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 65 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred CCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 9999999888888889999999999999765444333332 2211 578999999999985
No 155
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.50 E-value=3e-14 Score=148.46 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=106.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 30 ~ki~vv-G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 108 (201)
T 2hup_A 30 FKLVLV-GDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILA 108 (201)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEE
Confidence 677888 9999999999888877777766667666666667777776 5899999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++....... ..+..+.. .++|+++|+||+|+... ..++. ..+.+.+ ...+++.+
T Consensus 109 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~-~~~~~~~---------------~~~~~~~~ 172 (201)
T 2hup_A 109 YDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEA-QSLAEHY---------------DILCAIET 172 (201)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH-HHHHHHT---------------TCSEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHH-HHHHHHc---------------CCCEEEEE
Confidence 999864332221 22223332 46899999999998642 12111 2222211 11267889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 173 SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 173 SAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876553
No 156
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.50 E-value=5.4e-14 Score=147.51 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=80.5
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
....+|+++|++|+|||||+++|+...-. .+....++.......+.+++ ..+.||||
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 76 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN---------------------PSFITTIGIDFKIKTVDINGKKVKLQLWDT 76 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC---------------------CSSSCCCSCCEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC---------------------cccCCcccceEEEEEEEECCEEEEEEEEeC
Confidence 34578999999999999999999733210 01122233333334455565 68999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
||+.+|...+..+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999888888889999999999999875433332222 22322 378999999999984
No 157
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.50 E-value=4.7e-15 Score=162.38 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=118.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH----------HHHHHHh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT----------VEVERAL 71 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~----------~~~~~~~ 71 (1043)
.+|+.++ |..++||+|...+.+.........||+|++.....+.+++..+.||||||+.++. ..+..++
T Consensus 3 ~~~I~lv-G~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLI-GNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4678888 9999999999888888887788899999999999999999999999999998754 1122333
Q ss_pred --hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 72 --RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 72 --~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
+.+|++|+|+|++. ......+..++.+.++|+++|+||+|+.... .....+.+.+.++ .
T Consensus 82 ~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg----------------~ 143 (274)
T 3i8s_A 82 LSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG----------------C 143 (274)
T ss_dssp HHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHT----------------S
T ss_pred hhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcC----------------C
Confidence 68999999999985 3445556667777899999999999985321 1111233333321 3
Q ss_pred eeeeeeecccCCcchHHHHHHhhcc
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+++++||++|.|+++|++.+...+.
T Consensus 144 ~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 144 PVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999999986654
No 158
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.50 E-value=9.2e-14 Score=143.37 Aligned_cols=116 Identities=18% Similarity=0.107 Sum_probs=80.1
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
.....+|+++|+.|+|||||+++|+....... .....|.+... ..+.+++ ..+.+||
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------------~~~t~~~~~~~--~~~~~~~~~~~~~i~D 76 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------------HDLTIGVEFGA--RMVNIDGKQIKLQIWD 76 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC------------------------CCSSEEE--EEEEETTEEEEEEEEC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-------------------CCCcccceeEE--EEEEECCEEEEEEEEE
Confidence 34568999999999999999999974321110 01112222222 2333444 5899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|||+.+|......+++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 77 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 77 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp CTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 999999888888899999999999999875443333222 23332 378999999999985
No 159
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.50 E-value=2.4e-14 Score=144.31 Aligned_cols=157 Identities=13% Similarity=0.015 Sum_probs=110.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. +..| |+......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 7 ~~~i~v~-G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 7 EMRILIL-GLDGAGKTTILYRLQVGEVV-TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHSSCC-CCCC--CSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCCC-CcCC--cCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 3677788 99999999997666555543 2233 555566677888999999999999999888889999999999999
Q ss_pred eCCCCCchhH--HHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT--LTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~--~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ..+...+.. .++|+++|+||+|+.+.... +++.+.+... .. .. ...+++++||+
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~-----~~--~~-~~~~~~~~Sa~ 151 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS---SEMANSLGLP-----AL--KD-RKWQIFKTSAT 151 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGG-----GC--TT-SCEEEEECCTT
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH---HHHHHHhCch-----hc--cC-CceEEEECcCC
Confidence 9987543322 222223322 57899999999999764321 1222222100 00 11 12367899999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 152 ~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 152 KGTGLDEAMEWLVETLK 168 (171)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999886543
No 160
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.50 E-value=1.9e-13 Score=139.58 Aligned_cols=114 Identities=19% Similarity=0.208 Sum_probs=77.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
+..+|+++|++|+|||||+++|+...-.. ++ ....+... ......++ ..+.+||||
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~----------------~~---~~t~~~~~---~~~~~~~~~~~~l~i~Dt~ 74 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVD----------------DY---DPTIEDSY---LKHTEIDNQWAILDVLDTA 74 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCS----------------CC---CTTCCEEE---EEEEEETTEEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC----------------CC---CCCcccee---EEEEEeCCcEEEEEEEECC
Confidence 45789999999999999999997321100 00 00111111 22233344 456779999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-----HHHHHHhcCCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
|+.+|......+++.+|++++|+|+.+........ +.+.....++|+++|+||+|+..
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 75 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp SCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred CchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 99999888889999999999999999753322222 22333346789999999999863
No 161
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.50 E-value=2.4e-13 Score=141.60 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=79.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
.+..+|+++|+.|+|||||+++|+...-.. ...+++.......+.+++ ..+.||||
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt 69 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVE----------------------DYEPTKADSYRKKVVLDGEEVQIDILDT 69 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCT----------------------TCCTTCCEEEEEEEEETTEEEEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCC----------------------CCCCccceEEEEEEEECCEEEEEEEEcC
Confidence 346799999999999999999997432100 011111111122334444 47999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
||+.+|......+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 70 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp CCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred CChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 99999999999999999999999999874333222222 2222 2478999999999985
No 162
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.50 E-value=6.4e-14 Score=140.29 Aligned_cols=111 Identities=22% Similarity=0.135 Sum_probs=76.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG~ 277 (1043)
.+|+++|++|+|||||+++|+...... . ....+.......+.+.+ ..+.+|||||+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~--------~--------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 61 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE--------K--------------YDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS--------C--------------CCTTCCEEEEEEEEETTEEEEEEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc--------c--------------CCCCcceeEEEEEEECCEEEEEEEEECCCc
Confidence 579999999999999999997432110 0 00001111122233343 56999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-----HHHHHHhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+|.......++.+|++++|+|+.+....+... +.+.+...+.|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 999998889999999999999999753322222 2222223578999999999975
No 163
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.50 E-value=3e-13 Score=143.90 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=77.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|.+|+|||||+++|+... .. .....++|.......+.+++..+.||||||+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~--~~-------------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 86 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN--VD-------------------VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL 86 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC--EE-------------------EECC-----CEEEEEEEETTEEEEEEECTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--Cc-------------------cCCCCCcceeeeeeeeecCCCeEEEEECCCC
Confidence 45789999999999999999997431 10 0112345555555566778899999999999
Q ss_pred CCch---------HHHHHHhHhcCeEEEEEeCCCCcchH---HHHHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 278 VDFT---------VEVERALRVLDGAILVLCAVGGVQSQ---TLTVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~---------~e~~~~l~~~D~~ilVvda~~g~~~~---t~~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
.++. ..+....+.+|++|+|+|+.+..... ....+..+... ++|+++|+||+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 87 LDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp TTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred cCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 4321 12233457789999999998764422 23344445444 899999999999863
No 164
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.50 E-value=2e-14 Score=147.03 Aligned_cols=154 Identities=16% Similarity=0.052 Sum_probs=108.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+ .+. ..|.......+.+++..+.+|||||+.++...+..+++.+|++|+|+
T Consensus 21 ~~~i~v~-G~~~~GKSsli~~l~~~~~-~~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 21 EHKVIIV-GLDNAGKTTILYQFSMNEV-VHT--SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp CEEEEEE-EETTSSHHHHHHHHHTTSC-EEE--ECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCCC-Ccc--CCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 4678888 9999999999777776655 222 23444445667778999999999999998888889999999999999
Q ss_pred eCCCCCchhHH-HHHHHH-H---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQM-K---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l-~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++....... ..+..+ . ..++|+++|+||+|+...... +++.+.+. +.... ....+++++||+
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~-------~~~~~-~~~~~~~~~Sa~ 165 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV---AEISQFLK-------LTSIK-DHQWHIQACCAL 165 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTT-------GGGCC-SSCEEEEECBTT
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCH---HHHHHHhC-------ccccc-CCceEEEEccCC
Confidence 99876443332 222222 2 257899999999999753222 22222221 00000 112367999999
Q ss_pred ccCCcchHHHHHHh
Q psy11896 157 IDSGKTTLTERILF 170 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~ 170 (1043)
+|.|++++++.+..
T Consensus 166 ~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 166 TGEGLCQGLEWMMS 179 (181)
T ss_dssp TTBTHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHh
Confidence 99999999998864
No 165
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.50 E-value=6.7e-14 Score=140.41 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=62.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+..... ......|.+.. ....+......+.+|||||+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG--------------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------------------------CEEE-EEEEETTEEEEEEEEECC---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc--------------------CCCCccccceE-EEEEECCEEEEEEEEECCCCc
Confidence 357999999999999999999632111 01123334432 122233344678999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHHHh----cCCCeEEEEeccCCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
+|.......++.+|++++|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp ------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred cchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 99888888899999999999998643322222 2233332 4789999999999863
No 166
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.50 E-value=5e-14 Score=145.31 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=114.1
Q ss_pred CccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCC----------cchHHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGH----------VDFTVEVERA 70 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~----------~~~~~~~~~~ 70 (1043)
.+|+.++ |..++||+|...+..... ......+|+|++..... .+.++.+|||||+ ..+...+..+
T Consensus 23 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 23 KGEVAFV-GRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TCEEEEE-EBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 3677777 999999999976666554 33456677777655433 3567999999994 3455555556
Q ss_pred hhhc---CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 71 LRVL---DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 71 ~~~a---D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
++.+ |++++|+|++.+.......+..++...++|+++|+||+|+.... .....+.+.+.+. ...
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~ 166 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS------------KYG 166 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHH------------SSC
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHh------------hcC
Confidence 6655 99999999998888888888888888899999999999997532 3333344443321 112
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..+++++||++|.|++++++.+...+.
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 246789999999999999999987654
No 167
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.50 E-value=8e-14 Score=139.95 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=77.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtP 275 (1043)
+..+|+++|++|+|||||+++|+...-.. +....++.......+.++ ...+.+||||
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~ 62 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK---------------------DYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC---------------------CSSCCCSSSEEEEEEEETTEEEEEEEECCT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC---------------------CCCCceEEEEEEEEEEECCEEEEEEEEcCC
Confidence 45789999999999999999997431100 001111111222223333 3589999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh--cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~ 332 (1043)
|+.+|......+++.+|++++|+|+.+.........| ..+.. .+.|+++|+||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 63 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp TGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred CcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 9999888888889999999999999875433322222 22222 488999999999975
No 168
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.50 E-value=9.2e-14 Score=139.34 Aligned_cols=113 Identities=21% Similarity=0.158 Sum_probs=75.3
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+++|+..... . . + ....+... .....+..+...+.+|||||+.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~--~------~--------~---~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV--E------K--------Y---DPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC--C------S--------C---CCCSEEEE-EEEEESSSCEEEEEEEEECSSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--C------C--------C---CCCccceE-EEEEEECCEEEEEEEEECCChHH
Confidence 57999999999999999999742110 0 0 0 00001111 11111222346799999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH----HhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~----~~~~~p~ivviNKiD~~ 332 (1043)
|.......++.+|++++|+|+.+........ .+..+ ...++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 9998889999999999999998743222221 22222 23488999999999985
No 169
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=2.2e-13 Score=137.24 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=76.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
-.+|+++|++|+|||||+++|+........ ....+.+.. ...........+.+|||||+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------------~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY-------------------IPTVEDTYR-QVISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSC-------------------CCCSCEEEE-EEEEETTEEEEEEEEECCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------------CCCccccEE-EEEEECCEEEEEEEEECCCch
Confidence 367999999999999999999742211000 000111111 111122234578999999999
Q ss_pred CchHHHHHHhHhcCeEEEEEeCCCCcchHH-HHHHHHHHh-----cCCCeEEEEeccCCC
Q psy11896 279 DFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR-----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~~~~l~~~D~~ilVvda~~g~~~~t-~~~~~~~~~-----~~~p~ivviNKiD~~ 332 (1043)
+|......+++.+|++++|+|+.+...... ...+..+.+ .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred hhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 999999999999999999999986433222 223333332 378999999999975
No 170
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.50 E-value=8.8e-14 Score=145.31 Aligned_cols=116 Identities=18% Similarity=0.129 Sum_probs=81.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
+...+|+++|++|+|||||+++|+..... .+..+.++.......+.+++ ..+.||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT---------------------NDYISTIGVDFKIKTVELDGKTVKLQIWDT 64 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC---------------------TTCCCSSCCCEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCCCcccceeEEEEEEECCEEEEEEEEeC
Confidence 45689999999999999999999743211 01112222223333344444 58999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
||+.+|......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99999988888889999999999999976544443333 22222 4689999999999863
No 171
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=7.7e-14 Score=144.19 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=81.0
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINII 272 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~li 272 (1043)
+.....+|+++|+.|+|||||+++|+...-. . . ...++.......+.+++ ..+.+|
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~--~------~--------------~~~t~~~~~~~~~~~~~~~~~~~i~ 71 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFP--E------E--------------YVPTVFDHYAVSVTVGGKQYLLGLY 71 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCC--C------S--------------CCCSSCCCEEEEEESSSCEEEEEEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCC--C------C--------------CCCcccceeEEEEEECCEEEEEEEE
Confidence 3456689999999999999999999843110 0 0 00011111112233444 678999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH--HHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT--VNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~--~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
||||+.+|......+++.+|++++|+|+.+....+... .+..+... ++|+++|+||+|+..
T Consensus 72 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred ECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999999888888889999999999998754333332 23344443 889999999999875
No 172
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.50 E-value=5.7e-14 Score=144.23 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=82.1
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|+.|+|||||+++|+.... . .+...++|+......+.+++..+++|||||+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~---~------------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV---Y------------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 65 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE---E------------------EEECTTSCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc---c------------------ccCCCCeeccceEEEEEeCCcEEEEEECCCcC
Confidence 47899999999999999999973210 0 11234667776677778889999999999999
Q ss_pred CchH------HHHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 DFTV------EVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~------e~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+|.. .....++ .+|++++|+|+.. .......+..+...+.|+++|+||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 66 SLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp CCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 8842 2333443 4899999999875 2333444555666789999999999963
No 173
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.49 E-value=5.8e-14 Score=145.21 Aligned_cols=156 Identities=13% Similarity=0.045 Sum_probs=106.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. +..| |+......+.+++..+.+|||||+.++...+..+++.+|++|+|+
T Consensus 29 ~~ki~v~-G~~~vGKSsLi~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 29 QMRILMV-GLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 104 (192)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHCSSCCE-EEEE--ETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHHhCCcc-ccCC--cCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 4677888 99999999998777666654 3344 555666677888899999999999998888889999999999999
Q ss_pred eCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++....... ..+..+.. .++|+++|+||+|+...... +++.+.++.. .. . ....+++++||+
T Consensus 105 D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~-----~~--~-~~~~~~~~~SA~ 173 (192)
T 2b6h_A 105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPV---SELTDKLGLQ-----HL--R-SRTWYVQATCAT 173 (192)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGG-----GC--S-SCCEEEEECBTT
T ss_pred ECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCH---HHHHHHhCcc-----cc--c-CCceEEEECcCC
Confidence 99865332222 22222222 37899999999999754221 2233322110 00 0 112467899999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.+...+
T Consensus 174 ~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 174 QGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTBTHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHH
Confidence 9999999999987654
No 174
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=7.4e-14 Score=144.14 Aligned_cols=116 Identities=22% Similarity=0.149 Sum_probs=81.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...... ......|++.......+......+.||||||+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 74 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP-------------------ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-------------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc-------------------cCCCccceEEEEEEEEECCeEEEEEEEeCCCc
Confidence 45789999999999999999997432110 00112233333333333334578999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
.+|......+++.+|++|+|+|+...........| ..+.. .++|+++|+||+|+.
T Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 99988888999999999999999876444333333 23322 467999999999984
No 175
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.49 E-value=7.7e-14 Score=146.71 Aligned_cols=126 Identities=22% Similarity=0.238 Sum_probs=83.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec---CeeEEEEcC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDT 274 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDt 274 (1043)
+..+|+++|++|+|||||+++|+...-. . ....++ .....+.++ +..+.+|||
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~--------------------~~~~~~--~~~~~~~~~~~~~~~~~i~Dt 61 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--D--------------------TQTSIT--DSSAIYKVNNNRGNSLTLIDL 61 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--C--------------------BCCCCS--CEEEEEECSSTTCCEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--c--------------------ccCCcc--eeeEEEEecCCCccEEEEEEC
Confidence 4578999999999999999999743210 0 011111 112224555 578999999
Q ss_pred CCCCCchH-HHHHHhHhcCeEEEEEeCCCCcchHHHHH---HHHHH------hcCCCeEEEEeccCCCCC-CHHHHHHHH
Q psy11896 275 PGHVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLTV---NRQMK------RYDVPCIAFINKLDRLGA-DPYRVINQM 343 (1043)
Q Consensus 275 PG~~df~~-e~~~~l~~~D~~ilVvda~~g~~~~t~~~---~~~~~------~~~~p~ivviNKiD~~~~-~~~~~~~~i 343 (1043)
||+.+|.. .+..+++.+|++++|+|+.. ........ |.... ..++|+++|+||+|+... ...+..+.+
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l 140 (214)
T 2fh5_B 62 PGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 140 (214)
T ss_dssp CCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHH
Confidence 99999987 56667899999999999986 22222222 22221 246899999999999754 455555666
Q ss_pred HHHhC
Q psy11896 344 RQKVG 348 (1043)
Q Consensus 344 ~~~l~ 348 (1043)
.+.++
T Consensus 141 ~~~l~ 145 (214)
T 2fh5_B 141 EKELN 145 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 176
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.49 E-value=1.7e-13 Score=137.25 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=74.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|+.|+|||||+++|+...-.. . ...++.......+.+.+ ..+.+|||||
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--------~--------------~~~t~~~~~~~~~~~~~~~~~~~l~D~~G 61 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVE--------D--------------YEPTKADSYRKKVVLDGEEVQIDILDTAG 61 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS--------C--------------CCTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCC--------C--------------CCCCcceEEEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997432100 0 00111111112233343 5799999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
+.+|......+++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp ---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred cchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 999999999999999999999999974432222222 2222 2378999999999975
No 177
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.49 E-value=9.5e-14 Score=162.87 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=90.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC-
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV- 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~- 278 (1043)
.+|+++|.+|+|||||+|+|+.....+ .....|+|.+.....+.+++..+.||||||+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~--------------------vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~ 303 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI--------------------VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 303 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC--------------------CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCS
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc--------------------cCCCCCeeeeeEEEEEecCCeEEEEEECCCccc
Confidence 579999999999999999998543211 12255778777777888899999999999998
Q ss_pred Cch--------HHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 DFT--------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~--------~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++. .....+++.+|++|+|+|+.++...+...+++.+ .++|+++|+||+|+..
T Consensus 304 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 304 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp SCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred cchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 654 2346678999999999999988777777777655 4889999999999863
No 178
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.49 E-value=2.5e-13 Score=135.69 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=75.9
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG~ 277 (1043)
.+|+++|+.|+|||||+++|+...... . ...++.......+... ...+.+|||||+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~--------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 61 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD--------E--------------CDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS--------C--------------CCTTCCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc--------c--------------cCCccceEEEEEEEECCEEEEEEEEECCCc
Confidence 479999999999999999997432110 0 0001111111223333 356889999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHHh----cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|+.+......... +..+.. .++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 9999988899999999999999986533222222 222222 3789999999999864
No 179
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.49 E-value=7.6e-14 Score=147.07 Aligned_cols=116 Identities=15% Similarity=0.085 Sum_probs=80.0
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----------
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---------- 265 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---------- 265 (1043)
.++..+|+++|+.|+|||||+++|+....... ....++.......+.+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPK---------------------FITTVGIDFREKRVVYNAQGPNGSSGK 80 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCE---------------------EEEEEEEEEEEEEEEEEC-------CC
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcC---------------------CCCceeEEEEEEEEEECCccccccccC
Confidence 35568999999999999999999974321100 00111111111122222
Q ss_pred --CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HHh----cCCCeEEEEeccCCC
Q psy11896 266 --DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 266 --~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~ 332 (1043)
...+.||||||+.+|...+...++.+|++|+|+|+.+....+....|.. +.. .++|+++|+||+|+.
T Consensus 81 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred ceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 4689999999999999888999999999999999987544443333322 221 568999999999985
No 180
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.49 E-value=1.1e-13 Score=142.59 Aligned_cols=115 Identities=21% Similarity=0.152 Sum_probs=77.8
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
.+..+|+++|+.|+|||||+++|+...-.. .....++.......+.+++ ..+.+|||
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 76 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPD---------------------RTEATIGVDFRERAVDIDGERIKIQLWDT 76 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS---------------------SCCCCCSCCEEEEEEEETTEEEEEEEEEC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC---------------------CCCCCcceEEEEEEEEECCEEEEEEEEEC
Confidence 456899999999999999999997421110 0011122222223334444 68999999
Q ss_pred CCCCCch-HHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-----HHHHhcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFT-VEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~-~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-----~~~~~~~~p~ivviNKiD~~ 332 (1043)
||+.+|. .....+++.+|++|+|+|+.+.........| +.+...++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp CCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred CCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9998887 6677788999999999999875433322222 22223578999999999985
No 181
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.49 E-value=4.8e-14 Score=147.19 Aligned_cols=115 Identities=20% Similarity=0.150 Sum_probs=79.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
....+|+++|++|+|||||+++|+...... .....++.......+.+++ ..+.||||
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt 64 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN---------------------QYKATIGADFLTKEVMVDDRLVTMQIWDT 64 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS---------------------SCCCCCSEEEEEEEEESSSCEEEEEEEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC---------------------CCCCcccceEEEEEEEECCEEEEEEEEeC
Confidence 346789999999999999999997432110 0011222333333344443 68999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH-HHh-------cCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MKR-------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~-~~~-------~~~p~ivviNKiD~~ 332 (1043)
||+.+|......+++.+|++|+|+|+.++........|.. +.. .++|+++|+||+|+.
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 65 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp CSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 9999888777788899999999999987654433333322 111 478999999999986
No 182
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.49 E-value=3.5e-14 Score=144.86 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=76.3
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
..+..+|+++|++|+|||||+++|+.... .. ++ ....+.+. ...+.+++ ..+.+||
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~-~~---------------~~---~~t~~~~~---~~~~~~~~~~~~~~l~D 60 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQF-VD---------------SY---DPTIENTF---TKLITVNGQEYHLQLVD 60 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSC-CS---------------CC---CTTCCEEE---EEEEEETTEEEEEEEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCC-CC---------------CC---CCCccccE---EEEEEECCEEEEEEEEe
Confidence 34568999999999999999999973221 00 00 01112222 22234444 6789999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-----HHHHHHhcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|.......++.+|++++|+|+.+........ +.+.+...++|+++|+||+|+.
T Consensus 61 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp CCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred CCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 9999998777777888999999999998743322222 2233334578999999999985
No 183
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.49 E-value=2.7e-13 Score=138.63 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=77.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
+..+|+++|+.|+|||||+++|+...-. . ....++.......+.+.+ ..+.|||||
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~--------------------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~ 74 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV--E--------------------DYEPTKADSYRKKVVLDGEEVQIDILDTA 74 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--C--------------------SCCTTCCEEEEEEEEETTEEEEEEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC--C--------------------cCCCccceEEEEEEEECCEEEEEEEEECC
Confidence 4578999999999999999999743210 0 001111111122233444 579999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HH----HHhcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQ----MKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~----~~~~~~p~ivviNKiD~~ 332 (1043)
|+.+|......+++.+|++++|+|+.+....+....| .. ....++|+++|+||+|+.
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999999874332222222 22 222478999999999975
No 184
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.49 E-value=2.7e-13 Score=136.46 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=67.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
+.+|+++|++|+|||||+++|+........ ....+.......+.++ ...+.+|||||
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 60 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH---------------------EMENSEDTYERRIMVDKEEVTLIVYDIWE 60 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---------------------------------CEEEEEEEETTEEEEEEEECCCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc---------------------cCCCcCCeeeEEEEECCeEEEEEEEECCC
Confidence 468999999999999999999743221110 0111122222223344 36788999999
Q ss_pred CCCchH-HHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHHh----cCCCeEEEEeccCCC
Q psy11896 277 HVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~-e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~ 332 (1043)
+.+|.. .....++.+|++++|+|+.+......... +..... .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp C--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred ccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 999876 34455788999999999987433222222 222222 378999999999975
No 185
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.49 E-value=1.5e-14 Score=153.10 Aligned_cols=118 Identities=18% Similarity=0.126 Sum_probs=86.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
....+|+++|.+|+|||||+++++...-. .......|++.......+..++..+.+|||||
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~-------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 73 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFE-------------------KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHT-------------------CEEETTTTEEEEEEEEEETTEEEEEEEEEECS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC-------------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCC
Confidence 34578999999999999999996522100 00122445666665555555667899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHH-h--cCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK-R--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~-~--~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+....+....|.... . .++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp GGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred hHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 9999888888999999999999999865544444443222 2 2889999999999863
No 186
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.48 E-value=2.9e-14 Score=146.07 Aligned_cols=153 Identities=14% Similarity=0.024 Sum_probs=113.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++|+|
T Consensus 11 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 89 (186)
T 2bme_A 11 FKFLVI-GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 89 (186)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence 677888 9999999999888887887777788888777777777776 5899999999999999999999999999999
Q ss_pred EeCCCCCchhHHHH-HHHH---HhcCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQM---KRYDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l---~~~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++......... +..+ ...++|+++|+||+|+... ...+. ..+... . ..+++.+
T Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~-------------~---~~~~~~~ 152 (186)
T 2bme_A 90 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEA-SRFAQE-------------N---ELMFLET 152 (186)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHH-------------T---TCEEEEC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHH-------------c---CCEEEEe
Confidence 99986433222221 2222 2357899999999998532 11111 111111 1 1367889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 153 SALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876554
No 187
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.48 E-value=8.4e-14 Score=142.50 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=108.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |+.++||+|...+...+... +..| |.......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 16 ~~ki~iv-G~~~vGKSsL~~~l~~~~~~-~~~~--t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 91 (181)
T 1fzq_A 16 EVRILLL-GLDNAGKTTLLKQLASEDIS-HITP--TQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (181)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHCCSCCE-EEEE--ETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCC-cccC--cCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 3678888 99999999997776655432 2222 333344566778899999999999999999999999999999999
Q ss_pred eCCCCCchhHH-HHHH-HHH---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNR-QMK---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~-~l~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++....... ..+. .+. ..++|+++|+||+|+...... +++.+.++ +.... ....+++++||+
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~-------~~~~~-~~~~~~~~~Sa~ 160 (181)
T 1fzq_A 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA---SEIAEGLN-------LHTIR-DRVWQIQSCSAL 160 (181)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTT-------GGGCC-SSCEEEEECCTT
T ss_pred ECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH---HHHHHHhC-------chhcc-CCceEEEEccCC
Confidence 99865433222 1222 222 247899999999999754321 22333221 00000 112467899999
Q ss_pred ccCCcchHHHHHHhhc
Q psy11896 157 IDSGKTTLTERILFYT 172 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l 172 (1043)
+|.|++++++.+...+
T Consensus 161 ~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNV 176 (181)
T ss_dssp TCTTHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 188
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=5.3e-14 Score=141.45 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=110.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..|.++.+.....+.+++ .++.+|||||+.++...+..+++.+|++++
T Consensus 3 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 3 SIKLVLL-GEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 3678888 9999999999877777777766677666666555666654 479999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCC-----HHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGAD-----PYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~-----~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+++..+..... .+..+.. .++|+++|+||+|+.... .......+.... ..++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~----------------~~~~ 145 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK----------------GLLF 145 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH----------------TCEE
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc----------------CCEE
Confidence 99998643333222 1222222 378999999999986431 111112221111 1367
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+++||++|.|++++++.+...+
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 146 FETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998654
No 189
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.48 E-value=3.2e-13 Score=140.03 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=78.8
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE---ecCeeEE
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL---WKDHNIN 270 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---~~~~~i~ 270 (1043)
.+.++..+|+++|..|+|||||++++...... ....+.+......... .+...+.
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~ 72 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP----------------------NETLFLESTNKIYKDDISNSSFVNFQ 72 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCG----------------------GGGGGCCCCCSCEEEEECCTTSCCEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCC----------------------cceeeeccccceeeeeccCCCeeEEE
Confidence 44455678999999999999999987632110 0111111122222222 3457899
Q ss_pred EEcCCCCCCchHHH---HHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh-----cCCCeEEEEeccCCCC
Q psy11896 271 IIDTPGHVDFTVEV---ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 271 liDtPG~~df~~e~---~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
+|||||+.+|.... ..+++.+|++|+|+|+.+........+..++.. .++|+++|.||+|+..
T Consensus 73 i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 73 IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp EEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 99999999987776 788999999999999998733333333333332 3789999999999874
No 190
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.48 E-value=9.8e-14 Score=139.68 Aligned_cols=114 Identities=19% Similarity=0.062 Sum_probs=71.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
+..+|+++|++|+|||||+++|+...-.. +....++.......+.+++ ..+.+||||
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 63 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND---------------------KHITTLGASFLTKKLNIGGKRVNLAIWDTA 63 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS---------------------SCCCCCSCEEEEEEEESSSCEEEEEEEECC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc---------------------CCCCccceEEEEEEEEECCEEEEEEEEECC
Confidence 45789999999999999999997432110 0011112222222333333 578899999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH---HhcCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~---~~~~~p~ivviNKiD~~ 332 (1043)
|+.+|.......++.+|++++|+|+.+....+....| ..+ ...++|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 64 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp CC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred CcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9999888877788999999999999875443333322 222 23578999999999975
No 191
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=155.48 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=78.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+... ... . . .|+......+.+++..++||||||+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~--~~~---------------~-----~--pT~~~~~~~~~~~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGE--IVT---------------T-----I--PTIGFNVETVEYKNISFTVWDVGGQ 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSC--CEE---------------E-----E--EETTEEEEEEEETTEEEEEEECC--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCC--CCC---------------c-----c--cccceEEEEEecCcEEEEEEECCCC
Confidence 34589999999999999999996321 100 0 0 1333445567788999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchH--HHHHHHHHHh---cCCCeEEEEeccCCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQ--TLTVNRQMKR---YDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~--t~~~~~~~~~---~~~p~ivviNKiD~~~~ 334 (1043)
.+|......+++.+|++|+|+|+.+..... ...+...... .++|+++|+||+|+...
T Consensus 220 ~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp ---CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 999988899999999999999997643322 2222233222 37899999999998754
No 192
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.48 E-value=8.3e-14 Score=144.81 Aligned_cols=162 Identities=13% Similarity=0.067 Sum_probs=104.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. +.. .|+......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 25 ~~ki~lv-G~~~vGKSsLi~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 25 TGKLVFL-GLDNAGKTTLLHMLKDDRLG-QHV--PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CEEEEEE-EETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhcCCCC-ccC--CCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 3677777 99999999997776665543 222 3555566788888999999999999988888888999999999999
Q ss_pred eCCCCCchhHH-HHHHHHH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc--cc---ccCCCCccceeee
Q psy11896 82 CAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN--ES---LSEHKPIEYIRNI 151 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~--~~---l~~~~~~~~~~ii 151 (1043)
|+++..+.... ..+..+. ..++|+++|+||+|+.+.... +++.+.+...... .+ +.. ......+++
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 176 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE---ERLREMFGLYGQTTGKGSVSLKE-LNARPLEVF 176 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCH---HHHHHHHTCTTTCCCSSCCCTTT-CCSCCEEEE
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCH---HHHHHHhCccccccccccccccc-ccCceEEEE
Confidence 99865433222 1222222 247899999999999753222 2233322211000 00 000 011335789
Q ss_pred eeeecccCCcchHHHHHHhh
Q psy11896 152 GISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++||++|.|++++++.+...
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998754
No 193
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.48 E-value=3.8e-14 Score=143.96 Aligned_cols=154 Identities=16% Similarity=0.064 Sum_probs=113.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.++.+.....+.+++ ..+.+|||||+.++...+..+++.+|++++|
T Consensus 15 ~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 93 (179)
T 2y8e_A 15 FKLVFL-GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV 93 (179)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 677788 9999999999888887887777888888887777777776 4799999999999998899999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHH---hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMK---RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~---~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++....... ..+..+. ..++|+++|+||+|+..... ......+.... ..+++++|
T Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~S 157 (179)
T 2y8e_A 94 YDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL----------------NVMFIETS 157 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH----------------TCEEEEEB
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc----------------CCeEEEEe
Confidence 999863322221 1222222 24789999999999864211 11111111111 13678899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 158 a~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999986553
No 194
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.48 E-value=1.8e-14 Score=146.69 Aligned_cols=154 Identities=15% Similarity=0.024 Sum_probs=113.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+++|.+.....+.+++ ..+.+|||||+.++...+..+++.+|++|+|
T Consensus 10 ~~i~v~-G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 88 (181)
T 3tw8_B 10 FKLLII-GDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 88 (181)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEE
Confidence 678888 9999999999988888888888889999888888888887 6799999999999888888899999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHh--cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKR--YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~--~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa 155 (1043)
+|++++....... .+..+.. .++|+++|+||+|+..... ......+.... ..+++++||
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa 152 (181)
T 3tw8_B 89 YDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM----------------GIQLFETSA 152 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH----------------TCCEEECBT
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc----------------CCeEEEEEC
Confidence 9998743333322 2222222 2589999999999864321 11112222211 135688999
Q ss_pred cccCCcchHHHHHHhhcc
Q psy11896 156 HIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~l~ 173 (1043)
++|.|++++++.+...+.
T Consensus 153 ~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 153 KENVNVEEMFNCITELVL 170 (181)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887654
No 195
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.48 E-value=7.3e-14 Score=144.18 Aligned_cols=161 Identities=12% Similarity=0.035 Sum_probs=110.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. ....|+......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 23 ~~ki~~v-G~~~vGKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 23 HGKLLFL-GLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -CEEEEE-ESTTSSHHHHHHHHHHSCCC---CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCCC---ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 3677777 99999999997666655543 2234666667788889999999999999998888888899999999999
Q ss_pred eCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc-cccccCCCCccceeeeeeee
Q psy11896 82 CAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS-NESLSEHKPIEYIRNIGISA 155 (1043)
Q Consensus 82 Da~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~ii~iSa 155 (1043)
|+++..+..... .+..+. ..++|+++|+||+|+...... +++.+.+..... ..+. .......+++++||
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE---AELRSALGLLNTTGSQR--IEGQRPVEVFMCSV 173 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTCSSCCC-----CCSSCCEEEEECBT
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCH---HHHHHHhCCcccccccc--ccccceEEEEEeEC
Confidence 998754333222 222222 257899999999999753221 233333321100 0000 01112346899999
Q ss_pred cccCCcchHHHHHHhh
Q psy11896 156 HIDSGKTTLTERILFY 171 (1043)
Q Consensus 156 ~~g~Gi~~L~~~l~~~ 171 (1043)
++|.|++++++.+...
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999988753
No 196
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=3.6e-13 Score=139.47 Aligned_cols=116 Identities=18% Similarity=0.096 Sum_probs=77.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|++|+|||||+++|+...-.. . + ....+.+.. ...........+.+|||||+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------~--------~---~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~ 66 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD--------T--------Y---IPTIEDTYR-QVISCDKSVCTLQITDTTGS 66 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC--------T--------T---SCCCCEEEE-EEEEETTEEEEEEEEECCGG
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC--------c--------c---cCcccccee-EEEEECCEEEEEEEEeCCCh
Confidence 34789999999999999999997421100 0 0 001111111 11112223457999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHHHHHHh-----cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 67 HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99998888899999999999999864332222 22222222 3789999999999863
No 197
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.47 E-value=2.6e-14 Score=143.90 Aligned_cols=155 Identities=16% Similarity=0.021 Sum_probs=108.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..++++.+.....+.+++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 3 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 3 IMKILLI-GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred ceEEEEE-CcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 3678888 9999999999888887777777788888777777777765 479999999999988888899999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|+++..+.... ..+..+.. .++|+++|+||+|+.... ..+....+.+.++ .+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~S 145 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG----------------IPFIESS 145 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT----------------CCEEECB
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC----------------CeEEEEE
Confidence 9999864332222 22222322 378999999999995322 1122222222211 2568899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 146 a~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 146 AKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 198
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=4.1e-14 Score=147.57 Aligned_cols=154 Identities=13% Similarity=0.026 Sum_probs=112.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ .++.||||||+.++...+..+++.+|++|+|
T Consensus 27 ~ki~lv-G~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 105 (201)
T 2ew1_A 27 FKIVLI-GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 105 (201)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 678888 9999999999887777777777777777777767777776 4799999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++..+..... .+..+. ..++|+++|+||+|+.+.. ..+....+.... ..+++++|
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~~S 169 (201)
T 2ew1_A 106 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ----------------DMYYLETS 169 (201)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH----------------TCCEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc----------------CCEEEEEe
Confidence 9998643322211 222222 2468899999999986321 111112222111 13568899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 170 a~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 170 AKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999886654
No 199
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.47 E-value=4.5e-14 Score=156.63 Aligned_cols=157 Identities=12% Similarity=0.108 Sum_probs=119.4
Q ss_pred cceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCc-ch--------HHHHHHHhhh
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHV-DF--------TVEVERALRV 73 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~-~~--------~~~~~~~~~~ 73 (1043)
++.|+ |..++||+|...+.+..... ....+++|++...+.+.+++.++++|||||+. .. ...+..+++.
T Consensus 10 ~VaIv-G~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 10 FIAIV-GRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEE-CSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred EEEEE-CCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 45666 99999999986666655443 35678999998888888999999999999998 32 2223556788
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++. +...+..+++.+...++|+++++||+|+.. +.....+.+.+.. ....+..++++
T Consensus 89 ~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~------------~~~~~~~~i~i 154 (301)
T 1ega_A 89 VELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKADLLPHLQFLA------------SQMNFLDIVPI 154 (301)
T ss_dssp EEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHHHHHHHHHHH------------TTSCCSEEEEC
T ss_pred CCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHHHHHHHHHHH------------HhcCcCceEEE
Confidence 999999999987 888888888888777899999999999975 2333333332211 01223467999
Q ss_pred eecccCCcchHHHHHHhhcccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGRI 175 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~~ 175 (1043)
||++|.|+++|++.+...+++-
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCBC
T ss_pred ECCCCCCHHHHHHHHHHhCCcC
Confidence 9999999999999999887653
No 200
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.47 E-value=1.9e-14 Score=155.98 Aligned_cols=151 Identities=19% Similarity=0.142 Sum_probs=115.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH------HHHHHh--hhc
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV------EVERAL--RVL 74 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~------~~~~~~--~~a 74 (1043)
+|+.++ |..++||||...+.+.........||+|++.....+.+.+..+.||||||+.++.. ....++ ..+
T Consensus 6 ~kI~lv-G~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 84 (258)
T 3a1s_A 6 VKVALA-GCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDA 84 (258)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCC
Confidence 577777 99999999998888887777788899999999999999899999999999986542 223444 579
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|++++|+|++.. ......+.++...++|+++|+||+|+..... ....+.+.+.++ .+++++
T Consensus 85 d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg----------------~~vi~~ 146 (258)
T 3a1s_A 85 DLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLG----------------IPVVFT 146 (258)
T ss_dssp SEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC----------------SCEEEC
T ss_pred CEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcC----------------CCEEEE
Confidence 999999999852 3444556677778999999999999743110 001233333321 367899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|+++|++.+....
T Consensus 147 SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHh
Confidence 9999999999999998654
No 201
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.47 E-value=1.1e-13 Score=141.64 Aligned_cols=113 Identities=14% Similarity=0.077 Sum_probs=76.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
..+|+++|++|+|||||+++|+...-.. . ...++.......+.++ ...+.+|||||
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~--------~--------------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G 62 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPG--------E--------------YIPTVFDNYSANVMVDGKPVNLGLWDTAG 62 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS--------S--------------CCCCSCCEEEEEEEETTEEEEEEEECCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCC--------C--------------cCCcccceeEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997422100 0 0001101111122333 35677999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.++...+... .| ..+... ++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred CHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 9998877777889999999999999765444432 23 333333 889999999999864
No 202
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.47 E-value=8.3e-14 Score=141.35 Aligned_cols=155 Identities=14% Similarity=0.038 Sum_probs=110.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 7 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 7 LFKVILL-GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 3677888 9999999999888877777777778777777677777776 489999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH---h----cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK---R----YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~---~----~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+++........ ....+. . .++|+++|+||+|+.... ..+....+... ....++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---------------~~~~~~ 150 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD---------------NGDYPY 150 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH---------------TTCCCE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh---------------cCCceE
Confidence 99998643322221 112221 1 568999999999986322 11111222111 112357
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+++||++|.|++++++.+...+
T Consensus 151 ~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 8999999999999999987654
No 203
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.47 E-value=4.2e-14 Score=148.34 Aligned_cols=156 Identities=15% Similarity=0.017 Sum_probs=116.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..++++.+.....+.+++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 20 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 20 IMKILLI-GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 3677888 9999999999888887777777888888888777788777 579999999999988888899999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|+++....... ..+..+.. .++|+++|+||+|+..... ......+...++ .+++++|
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~S 162 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG----------------IPFIESS 162 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT----------------CCEEECB
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC----------------CEEEEEe
Confidence 9999864332221 22222322 3689999999999953221 112222222211 2578899
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+.+
T Consensus 163 a~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 163 AKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999876643
No 204
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.47 E-value=6.3e-14 Score=143.74 Aligned_cols=157 Identities=15% Similarity=0.044 Sum_probs=110.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+. ..+..| |+......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 18 ~~~i~v~-G~~~~GKssl~~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (186)
T 1ksh_A 18 ELRLLML-GLDNAGKTTILKKFNGED-VDTISP--TLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 93 (186)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHTTCC-CSSCCC--CSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCC-CCcccc--cCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 3677777 999999999977766655 333333 445556677778999999999999998888888999999999999
Q ss_pred eCCCCCchhHH-HHHHHH-H---hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQM-K---RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l-~---~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++..+.... ..+..+ . ..++|+++|+||+|+.+.... +++.+.+. +.. ......+++++||+
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~-------~~~-~~~~~~~~~~~Sa~ 162 (186)
T 1ksh_A 94 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC---NAIQEALE-------LDS-IRSHHWRIQGCSAV 162 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTT-------GGG-CCSSCEEEEECCTT
T ss_pred ECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCH---HHHHHHhC-------hhh-ccCCceEEEEeeCC
Confidence 99875433332 222222 2 247899999999999754321 22333221 000 00112467999999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 163 ~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 163 TGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987654
No 205
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=143.70 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=78.1
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
.+...+|+++|+.|+|||||+++|+...... +....++.......+.+++ ..+.|||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~D 80 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQ---------------------DSNHTIGVEFGSRVVNVGGKTVKLQIWD 80 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC---------------------------------CCEEEEEEEETTEEEEEEEEC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCc---------------------cCCCcccceeEEEEEEECCeeeEEEEEc
Confidence 3456899999999999999999997332110 0111222222223344444 6899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|......+++.+|++|+|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 81 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 81 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp CTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred CCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 999988777778889999999999999975544433333 2222 2478999999999975
No 206
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=7.5e-14 Score=145.13 Aligned_cols=154 Identities=12% Similarity=0.020 Sum_probs=101.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 28 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 28 AYKIVLA-GDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp CEEEEEE-SSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred CeEEEEE-CcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence 4678888 9999999999877777766655555444444444455554 579999999999999999999999999999
Q ss_pred EEeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCC-------C-HHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 80 VLCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGA-------D-PYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~-------~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
|+|+++......... +..+.. .++|+++|+||+|+... . ..+....+.... .
T Consensus 107 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~----------------~ 170 (199)
T 2p5s_A 107 LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY----------------G 170 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH----------------T
T ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc----------------C
Confidence 999986443333222 222322 37899999999998521 1 111111221111 1
Q ss_pred eeeeeeeecccCCcchHHHHHHhhc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+++++||++|.|++++++.+...+
T Consensus 171 ~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 171 ALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999987654
No 207
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.47 E-value=1.1e-13 Score=144.57 Aligned_cols=113 Identities=14% Similarity=0.058 Sum_probs=78.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|++|+|||||+++|+...-.- ....++.......+.+++ ..+.+|||||
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 87 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPG----------------------EYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC-----------------------CCCCSEEEEEEEEECC-CEEEEEEEEECC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCCC----------------------CcCCeecceeEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997322110 011122222222233333 4566999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+....+... .| ..+... ++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 88 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred chhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 9999888888889999999999999865554443 23 333333 899999999999864
No 208
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.47 E-value=1.7e-13 Score=145.87 Aligned_cols=160 Identities=11% Similarity=0.005 Sum_probs=109.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCc------ch---HHHHHHHhh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV------DF---TVEVERALR 72 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~------~~---~~~~~~~~~ 72 (1043)
.+|+.++ |..++||+|...+...+.+.....+++|.+.....+..++..+.||||||+. .. ...+..++.
T Consensus 29 ~~kI~vv-G~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 107 (228)
T 2qu8_A 29 KKTIILS-GAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAH 107 (228)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhc
Confidence 4677888 9999999999888777777666778899998888888888999999999993 31 223345578
Q ss_pred hcCEEEEEEeCCCCCchh---HHHHHHHHHhc--CCCEEEEEecCCCCCCC-H-HHHHHHHHHhhhhccccccccCCCCc
Q psy11896 73 VLDGAILVLCAVGGVQSQ---TLTVNRQMKRY--DVPCIAFINKLDRLGAD-P-YRVINQMRQKTSRWISNESLSEHKPI 145 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~---~~~~~~~l~~~--~~piilvlNKiDl~~~~-~-~~~~~~l~~~~~~~~~~~~l~~~~~~ 145 (1043)
.+|++|+|+|+++..+.. ....+..+... ++|+++|+||+|+.... . ....+.+..... . . .
T Consensus 108 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----~------~-~ 176 (228)
T 2qu8_A 108 INGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD----N------V-K 176 (228)
T ss_dssp SSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH----H------C-C
T ss_pred cccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH----h------c-C
Confidence 889999999998754432 23344555554 79999999999996531 1 111111211110 0 0 0
Q ss_pred cceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 146 EYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 146 ~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
...+++++||++|.|++++++.+...+.
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 177 NPIKFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCceEEEEecccCCCHHHHHHHHHHHHH
Confidence 1246789999999999999999887654
No 209
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.46 E-value=3.4e-13 Score=138.74 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=68.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|..|+|||||+++|+...... . ..+++.......+.+.+ ..+.+|||||
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--------~--------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G 78 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVD--------E--------------YDPTIEDSYRKQVVIDGETCLLDILDTAG 78 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS--------C--------------CCTTCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcc--------c--------------cCCccceEEEEEEEECCEEEEEEEEECCC
Confidence 4689999999999999999997432100 0 00111111122233444 5699999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 79 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 999988888899999999999999875443333332 22222 3789999999999863
No 210
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.46 E-value=2.1e-14 Score=146.60 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=103.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.+. ......+..++ +++.+|||||+.++...+..+++.+|++++|
T Consensus 7 ~ki~~~-G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 7 RKIAIL-GYRSVGKSSLTIQFVEGQFVDSYDPTIE-NTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred EEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCCcc-ccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 678888 9999999999777766665544444333 33255556666 5689999999999877778889999999999
Q ss_pred EeCCCCCchhHHH-----HHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-----~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++........ +.......++|+++|+||+|+.... .......+.+.+ . .+++++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~~~ 148 (181)
T 3t5g_A 85 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW-------------N---AAFLES 148 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT-------------T---CEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh-------------C---CcEEEE
Confidence 9998633222221 1222223478999999999986432 111122222221 1 257889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999986553
No 211
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.46 E-value=1.1e-13 Score=144.04 Aligned_cols=154 Identities=16% Similarity=0.040 Sum_probs=109.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.++.+.....+..+ ..++.||||||+.++...+..+++.+|++|+|
T Consensus 9 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 87 (203)
T 1zbd_A 9 FKILII-GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILM 87 (203)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEE
Confidence 678888 999999999987777777665555555544444444444 35899999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++........ .+..+.. .++|+++|+||+|+.... .......+.+.++ .+++++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~S 151 (203)
T 1zbd_A 88 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG----------------FEFFEAS 151 (203)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT----------------CEEEECB
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC----------------CeEEEEE
Confidence 9998643322222 2223333 478999999999996532 1112222222211 2578999
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 152 a~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 212
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.46 E-value=6e-14 Score=144.46 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=108.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchH-HHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFT-VEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~-~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++.+.....+.+++ .++.||||||+.++. ..+..+++.+|++|
T Consensus 20 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 20 IFKIIVI-GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 3678888 9999999999888777777777777777777666777766 589999999999988 77888999999999
Q ss_pred EEEeCCCCCchhHHH-HHHHH----HhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~-~~~~l----~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++..+..... ....+ ...++|+++|+||+|+.... ..+....+.... . .+++
T Consensus 99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~ 162 (189)
T 1z06_A 99 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH-------------S---MPLF 162 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-------------T---CCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHc-------------C---CEEE
Confidence 999998643222211 11222 23478999999999985421 111122222211 1 2568
Q ss_pred eeeeccc---CCcchHHHHHHhh
Q psy11896 152 GISAHID---SGKTTLTERILFY 171 (1043)
Q Consensus 152 ~iSa~~g---~Gi~~L~~~l~~~ 171 (1043)
++||++| .|++++++.+...
T Consensus 163 ~~Sa~~~~~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 163 ETSAKNPNDNDHVEAIFMTLAHK 185 (189)
T ss_dssp ECCSSSGGGGSCHHHHHHHHC--
T ss_pred EEeCCcCCcccCHHHHHHHHHHH
Confidence 8999999 8888888887654
No 213
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.46 E-value=7e-14 Score=142.84 Aligned_cols=157 Identities=17% Similarity=0.076 Sum_probs=106.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+ . ....|+......+.+++.++.+|||||+.++...+..+++.+|++++|+
T Consensus 18 ~~~i~v~-G~~~~GKssli~~l~~~~~-~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (183)
T 1moz_A 18 ELRILIL-GLDGAGKTTILYRLQIGEV-V--TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV 93 (183)
T ss_dssp CEEEEEE-EETTSSHHHHHHHTCCSEE-E--EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCc-C--ccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 4677888 9999999999776665555 2 2334555666777788899999999999988888888999999999999
Q ss_pred eCCCCCchhHH-HHHHHHH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~~-~~~~~l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++....... ..+..+. ..++|+++|+||+|+.+.... +++.+.+. ..... ....+++++||+
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~i~~~~~-------~~~~~-~~~~~~~~~Sa~ 162 (183)
T 1moz_A 94 DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELN-------LVELK-DRSWSIVASSAI 162 (183)
T ss_dssp ETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTT-------TTTCC-SSCEEEEEEBGG
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCH---HHHHHHhC-------ccccc-CCceEEEEccCC
Confidence 99875443322 2222222 257899999999999754222 22333221 10001 122467999999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 163 ~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 163 KGEGITEGLDWLIDVIK 179 (183)
T ss_dssp GTBTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999886553
No 214
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.46 E-value=8.2e-14 Score=145.39 Aligned_cols=154 Identities=11% Similarity=-0.005 Sum_probs=78.3
Q ss_pred ccceeeeeecccccccCCccccCC--ChhhhhhcCCccccceEEEEecC----eeEEEEeCCCCcchHHHHHHHhhhcCE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMD--SMELERQRGITIQSAATYTLWKD----HNINIIDTPGHVDFTVEVERALRVLDG 76 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d--~~~~e~~~G~T~~~~~~~~~~~~----~~i~liDTPG~~~~~~~~~~~~~~aD~ 76 (1043)
+|+.++ |..++||+|...+...+ .+..+..+.+..+.....+.+++ ..+.||||||+.++...+..+++.+|+
T Consensus 21 ~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 99 (208)
T 2yc2_C 21 CKVAVV-GEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYY 99 (208)
T ss_dssp EEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcE
Confidence 577777 99999999998877777 55555555555566667777774 589999999999999999999999999
Q ss_pred EEEEEeCCCCCchhHHH-HHHHHHh------cCCCEEEEEecCCCCC-C-CH-HHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 77 AILVLCAVGGVQSQTLT-VNRQMKR------YDVPCIAFINKLDRLG-A-DP-YRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~~-~~~~l~~------~~~piilvlNKiDl~~-~-~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
+|+|+|+++........ .+..+.. .++|+++|+||+|+.. . .. .+....+.+.+ .
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~-------------~-- 164 (208)
T 2yc2_C 100 AILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN-------------T-- 164 (208)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT-------------T--
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc-------------C--
Confidence 99999998654322222 2223332 4789999999999965 2 11 11112222211 1
Q ss_pred ceeeeeeeecc-cCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHI-DSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~-g~Gi~~L~~~l~~~l~ 173 (1043)
.+++++||++ |.|++++++.+...+.
T Consensus 165 -~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 165 -LDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp -CEEEECCC-------CHHHHHHHHHHH
T ss_pred -CEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 3678999999 9999999999887654
No 215
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.46 E-value=6.2e-14 Score=144.39 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=108.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccc-eEEEEec-----------CeeEEEEeCCCCcchHHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSA-ATYTLWK-----------DHNINIIDTPGHVDFTVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~-~~~~~~~-----------~~~i~liDTPG~~~~~~~~~~~ 70 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.. ...+..+ ...+.||||||+.++...+..+
T Consensus 12 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 90 (195)
T 3bc1_A 12 IKFLAL-GDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF 90 (195)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred EEEEEE-CCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence 577777 99999999998777766666555555555444 3445544 3589999999999999999999
Q ss_pred hhhcCEEEEEEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCC
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHK 143 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~ 143 (1043)
++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+.... ..+....+...+
T Consensus 91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------------- 157 (195)
T 3bc1_A 91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY------------- 157 (195)
T ss_dssp TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-------------
T ss_pred HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc-------------
Confidence 9999999999999864333322 22222322 478999999999986421 111222222211
Q ss_pred CccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 144 PIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 144 ~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
. .+++++||++|.|++++++.+...+.
T Consensus 158 ~---~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 158 G---IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp T---CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred C---CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 25688999999999999999887654
No 216
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.46 E-value=2.1e-13 Score=143.40 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=107.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHH-HHHHHhhhcCEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTV-EVERALRVLDGA 77 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~-~~~~~~~~aD~i 77 (1043)
.+|+.++ |+.++||+|...+.+.+.+.... +.++ .....+.++ +.++.+|||||+.++.. .+..+++.+|++
T Consensus 7 ~~ki~vv-G~~~~GKTsli~~l~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 7 QRAVLFV-GLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp -CEEEEE-CSTTSSHHHHHHHHHHSCCCCBC-CCCS--CEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCccccc-CCcc--eeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 4788888 99999999998777766655433 3333 333446666 57899999999999988 677889999999
Q ss_pred EEEEeCCCCCchhHHHHHHH----HH-----hcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhhh---------------
Q psy11896 78 ILVLCAVGGVQSQTLTVNRQ----MK-----RYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSR--------------- 132 (1043)
Q Consensus 78 IlVvDa~~~~~~~~~~~~~~----l~-----~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~~--------------- 132 (1043)
|+|+|++. ..........+ +. ..++|+++|+||+|+... ......+.+.+.+..
T Consensus 83 i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 83 VFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999985 22222222221 11 236899999999999754 444445555544431
Q ss_pred -----ccccccccCCCCc----cceeeeeeeeccc------CCcchHHHHHHhh
Q psy11896 133 -----WISNESLSEHKPI----EYIRNIGISAHID------SGKTTLTERILFY 171 (1043)
Q Consensus 133 -----~~~~~~l~~~~~~----~~~~ii~iSa~~g------~Gi~~L~~~l~~~ 171 (1043)
.....+ ..+.. ...+++.+||++| .|++++++.+...
T Consensus 162 ~~~~~~~~~~~--~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKG--KEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTT--SCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCC--CCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111000 00111 0346789999999 9999999988753
No 217
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.46 E-value=4.1e-14 Score=146.02 Aligned_cols=155 Identities=14% Similarity=-0.011 Sum_probs=108.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++.+.....+..++ .++.||||||+.++...+..+++.+|++|+
T Consensus 21 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 99 (191)
T 2a5j_A 21 LFKYIII-GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 99 (191)
T ss_dssp EEEEEEE-SSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred ceEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEE
Confidence 3678888 9999999999888777777766777667666666666665 489999999999988888899999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++....... ..+..+.. .++|+++|+||+|+.... ..+....+.... ..+++.+
T Consensus 100 v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~~ 163 (191)
T 2a5j_A 100 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH----------------GLIFMET 163 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----------------TCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc----------------CCEEEEE
Confidence 9999864332222 22223332 378999999999986421 111112222211 1257889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 164 Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 164 SAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876543
No 218
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.5e-13 Score=145.67 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=78.5
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
.+...+|+++|++|+|||||+++|+....... ....++.......+.+++ ..+.|||
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D 68 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD---------------------SKSTIGVEFATRTLEIEGKRIKAQIWD 68 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC---------------------------CCSEEEEEEEETTEEEEEEEEC
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCC---------------------CCCcccceeEEEEEEECCEEEEEEEEE
Confidence 34568999999999999999999974321110 011122222223344555 6899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|||+.+|...+..+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 69 t~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp CTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred CCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999988788888999999999999976544443333 23332 378999999999975
No 219
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.46 E-value=4.8e-14 Score=141.57 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=110.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 5 ~~~i~v~-G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 5 AIKMVVV-GNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eEEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 3677777 9999999999887777777766777777776666666665 479999999999988888899999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh--cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR--YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~--~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|+++..+.... .....+.. .++|+++|+||+|+.... ..+....+.+.+ ..+++++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~S 147 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL----------------KLRFYRTS 147 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH----------------TCEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHc----------------CCeEEEEe
Confidence 9999864322221 12222222 478999999999986421 111122222211 12678999
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 148 a~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 148 VKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp TTTTBSSHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999987543
No 220
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.46 E-value=1.8e-14 Score=146.81 Aligned_cols=155 Identities=15% Similarity=0.051 Sum_probs=101.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---CeeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.++ ...+.+|||||+.++...+..+++.+|++|
T Consensus 8 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 8 ILKVIIL-GDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 3677788 999999999988888787777777887777777777665 357999999999999988889999999999
Q ss_pred EEEeCCCCCchhHHHH-HHHHHh-------cCCCEEEEEecCCCCCCC---HHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 79 LVLCAVGGVQSQTLTV-NRQMKR-------YDVPCIAFINKLDRLGAD---PYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~-~~~l~~-------~~~piilvlNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+|+|+++......... ...+.. .++|+++|+||+|+.... .......+... ...
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~---------------~~~ 151 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS---------------LGD 151 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH---------------TTS
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh---------------cCC
Confidence 9999986433222221 122211 578999999999985321 11111222211 112
Q ss_pred eeeeeeeecccCCcchHHHHHHhhc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+++++||++|.|++++++.+...+
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 152 IPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999987644
No 221
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.46 E-value=1e-13 Score=141.67 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=107.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++... ...+..++. .+.+|||||+.++...+..+++.+|++++
T Consensus 18 ~~ki~v~-G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 18 TYKLVVV-GDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 3688888 9999999999777776666655555554443 455555655 46679999999998889999999999999
Q ss_pred EEeCCCCCchhHH-----HHHHHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-----TVNRQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-----~~~~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.... .+.......++|+++|+||+|+.+.. .......+.+.+ . .++++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~~~ 159 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-------------N---IPYIE 159 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-------------T---CCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-------------C---CeEEE
Confidence 9999864322211 12222233578999999999986421 111222222221 1 35688
Q ss_pred eeec-ccCCcchHHHHHHhhc
Q psy11896 153 ISAH-IDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~-~g~Gi~~L~~~l~~~l 172 (1043)
+||+ +|.|++++++.+...+
T Consensus 160 ~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 160 TSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp EBCSSSCBSHHHHHHHHHHHH
T ss_pred eccCCCCCCHHHHHHHHHHHH
Confidence 9999 9999999999987653
No 222
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=7.1e-14 Score=142.25 Aligned_cols=154 Identities=12% Similarity=-0.007 Sum_probs=102.9
Q ss_pred ccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
+|+.++ |..++||+|...+...+.+. ....++++.+.....+..++. ++.+|||||+.++...+..+++.+|++|+
T Consensus 11 ~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (180)
T 2g6b_A 11 FKVMLV-GDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL 89 (180)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEE
Confidence 577777 99999999997777666653 355677777766666666654 79999999999999989999999999999
Q ss_pred EEeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+.... ..+..+.. .++|+++|+||+|+.... .......+.+.. . .+++++
T Consensus 90 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~~~ 153 (180)
T 2g6b_A 90 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY-------------G---LPFMET 153 (180)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-------------T---CCEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc-------------C---CeEEEE
Confidence 9999864332222 22222322 578999999999997532 111122222211 1 256889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876553
No 223
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.45 E-value=4.9e-14 Score=145.06 Aligned_cols=157 Identities=10% Similarity=0.000 Sum_probs=110.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+. +..| |+......+.+++.++.+|||||+.++...+..+++.+|++|+|+
T Consensus 22 ~~~i~v~-G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 97 (189)
T 2x77_A 22 KIRVLML-GLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV 97 (189)
T ss_dssp CEEEEEE-EETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEE
Confidence 4677788 99999999997777666554 2333 555666777888999999999999988877778889999999999
Q ss_pred eCCCCCchhH--HHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT--LTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~--~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ..+...+.. .++|+++|+||+|+...... +++.+.+... .. .. ...+++++||+
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~-----~~--~~-~~~~~~~~Sa~ 166 (189)
T 2x77_A 98 DSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE---AEIAEQLGVS-----SI--MN-RTWTIVKSSSK 166 (189)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGG-----GC--CS-SCEEEEECCTT
T ss_pred eCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH---HHHHHHhChh-----hc--cC-CceEEEEccCC
Confidence 9987543332 222222222 37899999999999754321 2222222100 00 11 12367999999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|++++++.+...+.
T Consensus 167 ~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 167 TGDGLVEGMDWLVERLR 183 (189)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHH
Confidence 99999999999886653
No 224
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.45 E-value=4.1e-14 Score=144.35 Aligned_cols=116 Identities=19% Similarity=0.078 Sum_probs=72.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...-..... .+. +.... ....+......+.+|||||+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~---------~t~----------~~~~~-~~~~~~~~~~~~~i~Dt~G~ 66 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV---------PTV----------FDNFS-ANVVVNGATVNLGLWDTAGQ 66 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------CB-CCCC-------CEEECCCC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC---------Cee----------eeeEE-EEEEECCEEEEEEEEECCCC
Confidence 34689999999999999999997432110000 000 00000 00112223456779999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|+.+........ .| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 999888888889999999999998754433332 23 23332 2789999999999764
No 225
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.45 E-value=9.6e-15 Score=151.89 Aligned_cols=153 Identities=14% Similarity=0.029 Sum_probs=107.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|+..+...+.+..+..+++|.+.....+.+++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 34 ~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (199)
T 3l0i_B 34 FKLLLI-GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 112 (199)
T ss_dssp EEEEEE-CCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence 678888 9999999999999988888888888888888888888877 5799999999998888888899999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCCHH--HHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGADPY--RVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++......... +..+.. .++|+++|+||+|+...... .....+... .. .+++++|
T Consensus 113 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-------------~~---~~~~~vS 176 (199)
T 3l0i_B 113 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-------------LG---IPFLETS 176 (199)
T ss_dssp C-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT-------------TT---CCBCCCC
T ss_pred EECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHH-------------cC---CeEEEEE
Confidence 99987544333222 222332 26899999999998643110 001111111 11 3568899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 177 A~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 177 AKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp C---HHHHHHHHHHTTTT
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 226
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.45 E-value=1e-13 Score=139.35 Aligned_cols=154 Identities=12% Similarity=0.019 Sum_probs=107.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+..+.+.....+..+ +.++.+|||||+.++...+..+++.+|++++
T Consensus 6 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 6 QFKLVLL-GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 3678888 999999999987777776665555554444444444444 4589999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+..... .+..+.. .++|+++|+||+|+... ..++. ..+... . ..++++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~-~~~~~~-------------~---~~~~~~ 147 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEA-QSYADD-------------N---SLLFME 147 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHH-------------T---TCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHH-HHHHHH-------------c---CCeEEE
Confidence 99998643322222 2223322 36789999999998542 11111 111111 1 135788
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 148 ~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 148 TSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CCTTTCTTHHHHHHHHHHTSC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987653
No 227
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.45 E-value=1.8e-14 Score=154.53 Aligned_cols=142 Identities=20% Similarity=0.217 Sum_probs=86.9
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
.+....++|+++|++|+|||||+++|+....... .....++|.......+.+++..++|||
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-------------------~~~~~~~t~~~~~~~~~~~~~~i~liD 84 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHS-------------------GTAAKSITKKCEKRSSSWKETELVVVD 84 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC--------------------------CCSCEEEEEEETTEEEEEEE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCcc-------------------CCCCCceeeeEEEEEEEeCCceEEEEE
Confidence 3445678999999999999999999984322110 112335677777777889999999999
Q ss_pred CCCCCCch-------HHHHHHh----HhcCeEEEEEeCCCCcchHHHHHHHHHH-----hcCCCeEEEEeccCCCCCC-H
Q psy11896 274 TPGHVDFT-------VEVERAL----RVLDGAILVLCAVGGVQSQTLTVNRQMK-----RYDVPCIAFINKLDRLGAD-P 336 (1043)
Q Consensus 274 tPG~~df~-------~e~~~~l----~~~D~~ilVvda~~g~~~~t~~~~~~~~-----~~~~p~ivviNKiD~~~~~-~ 336 (1043)
|||+.+.. .++.+.+ +.+|++|+|+|+..... .....+..+. ....|+++|+||+|+.... .
T Consensus 85 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 85 TPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp CCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-----
T ss_pred CCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccH
Confidence 99986532 2333333 45699999999875333 3333333222 2446999999999987432 2
Q ss_pred H-------HHHHHHHHHhCCCceeee
Q psy11896 337 Y-------RVINQMRQKVGHNAAFLQ 355 (1043)
Q Consensus 337 ~-------~~~~~i~~~l~~~~~~~~ 355 (1043)
. +.++++.+.++....++.
T Consensus 164 ~~~i~~~~~~l~~l~~~~~~~~~~~~ 189 (239)
T 3lxx_A 164 HDYLREAPEDIQDLMDIFGDRYCALN 189 (239)
T ss_dssp -------CHHHHHHHHHHSSSEEECC
T ss_pred HHHHHhchHHHHHHHHHcCCEEEEEE
Confidence 2 245666666665544333
No 228
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.45 E-value=1.4e-13 Score=139.74 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=107.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 16 ~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (179)
T 1z0f_A 16 FKYIII-GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (179)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence 677788 9999999999877776666655555555454445555554 5799999999999999999999999999999
Q ss_pred EeCCCCCchhHHHH-HHHHH---hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMK---RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~---~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++......... +..+. ..++|+++|+||+|+..... .+....+.+. . ..+++++|
T Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~~~~S 158 (179)
T 1z0f_A 95 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-------------N---GLLFLEAS 158 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------------T---TCEEEECC
T ss_pred EeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-------------c---CCEEEEEe
Confidence 99986533322222 22222 25789999999999853211 1111122111 1 13678899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 159 a~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 159 AKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887543
No 229
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.45 E-value=4.3e-14 Score=149.00 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=109.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec------------CeeEEEEeCCCCcchHHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK------------DHNINIIDTPGHVDFTVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~------------~~~i~liDTPG~~~~~~~~~~~ 70 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.++ ..++.||||||+.++...+..+
T Consensus 26 ~ki~vv-G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 104 (217)
T 2f7s_A 26 IKLLAL-GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 104 (217)
T ss_dssp EEEEEE-SCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEE-CcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence 677777 999999999987777777766666655555554445444 4679999999999999999999
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHH-HHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCC
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHK 143 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~-~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~ 143 (1043)
++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.... .......+.+.+
T Consensus 105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~------------- 171 (217)
T 2f7s_A 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKY------------- 171 (217)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-------------
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHC-------------
Confidence 9999999999999864333222221 11211 467999999999986421 111222222211
Q ss_pred CccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 144 PIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 144 ~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
. .+++++||++|.|++++++.+...+..
T Consensus 172 ~---~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 172 G---IPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp T---CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred C---CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1 256889999999999999999876543
No 230
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.45 E-value=6.1e-14 Score=164.41 Aligned_cols=151 Identities=15% Similarity=0.059 Sum_probs=93.8
Q ss_pred ccceeeeeecccccccCCccccCCC-hhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH--------HHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE--------VERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~--------~~~~~~~ 73 (1043)
+|+.++ |..++||+|...+.+... ......+|+|++.....+.+++..+.||||||+.++... +..+++.
T Consensus 234 ~kV~iv-G~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 234 VSTVIA-GKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp EEEEEE-CCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSS
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhccc
Confidence 577777 999999999977766653 356788999999999999999999999999999875533 3446789
Q ss_pred cCEEEEEEeCCCCCch----hHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 74 LDGAILVLCAVGGVQS----QTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~----~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+|++|+|+|++++... ....++..+. ++|+++|+||+|+........ +.+.+. .+.+
T Consensus 313 aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~l~~~----------------~~~~ 373 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI-RAIADG----------------TGTE 373 (476)
T ss_dssp CSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH-HHHHHH----------------HTSC
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH-HHHHhc----------------CCCc
Confidence 9999999999987765 3444444333 789999999999976543221 222221 1136
Q ss_pred eeeeeecccCCcchHHHHHHhhcc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++++||++|.|+++|++.+...+.
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 789999999999999999987654
No 231
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.45 E-value=6e-14 Score=145.73 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=111.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--------------------------------
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-------------------------------- 49 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-------------------------------- 49 (1043)
.+|+.++ |..++||+|+..+...+.+..+..+.++.+.....+.+++
T Consensus 7 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 7 SYKTVLL-GESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SEEEEEE-CCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4677888 9999999999888877777766666666666555566554
Q ss_pred -------eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHH-HHHHH-HhcCCCEEEEEecCCCCCCCHH
Q psy11896 50 -------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM-KRYDVPCIAFINKLDRLGADPY 120 (1043)
Q Consensus 50 -------~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~-~~~~l-~~~~~piilvlNKiDl~~~~~~ 120 (1043)
..+.||||||+.++...+..+++.+|++|+|+|++++....... .+..+ ...++|+++|+||+|+.....
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~- 164 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQV- 164 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCS-
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccC-
Confidence 78999999999999988999999999999999998754433322 22223 235689999999999432111
Q ss_pred HHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 121 RVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
..+++.+... . . ..+++++||++|.|++++++.+...+
T Consensus 165 -~~~~~~~~~~----~------~---~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 165 -DILEVQKYAQ----D------N---NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp -CHHHHHHHHH----H------T---TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -CHHHHHHHHH----H------c---CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 1122222211 0 1 13678999999999999999987654
No 232
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.45 E-value=2.1e-14 Score=156.54 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=112.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH------HHHHHHhh--h
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT------VEVERALR--V 73 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~------~~~~~~~~--~ 73 (1043)
.+|+.++ |.+++||||.+.+.+.........||+|++...+.+.. +.++.+|||||+.++. ..+..++. .
T Consensus 3 ~~kI~lv-G~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 3 MTEIALI-GNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 4688888 99999999998777776666677799999988888776 7899999999998764 34455665 5
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|++++|+|++. .........++.+.++|+++|+||+|+.... .....+.+.+.++ .++++
T Consensus 81 ~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----------------~~vi~ 142 (272)
T 3b1v_A 81 ADSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLG----------------VPVVA 142 (272)
T ss_dssp CSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------SCEEE
T ss_pred CCEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC----------------CCEEE
Confidence 999999999975 2333444556667899999999999974211 0011123333221 36789
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|+++|++.+....
T Consensus 143 ~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 143 TSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CBTTTTBSHHHHHHHHHHSC
T ss_pred EEccCCCCHHHHHHHHHHHH
Confidence 99999999999999997654
No 233
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.45 E-value=6.5e-14 Score=146.34 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=114.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..++++.+.....+.+++. .+.||||||+.++...+..+++.+|++|+|
T Consensus 9 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv 87 (206)
T 2bcg_Y 9 FKLLLI-GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 87 (206)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEE
Confidence 678888 99999999998888878877777888887777777777664 799999999999888888899999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++......... +..+.. .++|+++|+||+|+.... .......+... .. .+++++|
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~~---~~~~~~S 151 (206)
T 2bcg_Y 88 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-------------NK---MPFLETS 151 (206)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-------------TT---CCEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-------------cC---CeEEEEe
Confidence 99986443333222 222322 368999999999997532 11111222211 11 3568899
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+..
T Consensus 152 a~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 152 ALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999876653
No 234
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.45 E-value=5.5e-14 Score=155.94 Aligned_cols=158 Identities=13% Similarity=0.071 Sum_probs=105.5
Q ss_pred cCCccccCCChh-hhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC-chhHHH-H
Q psy11896 18 KDNVGAVMDSME-LERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLT-V 94 (1043)
Q Consensus 18 s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~-~ 94 (1043)
+....++.+.+. .+..|.+. +.....+. .+.++.+||| ++++...+..+++++|++|+|+|+++.. ...... .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~-~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~ 107 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPD-ETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKF 107 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT-CEEEEECC-CSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCc-cEEEEEEc-CCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHH
Confidence 455566666666 55555433 21112222 2337999999 8888888888999999999999998754 333222 2
Q ss_pred HHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 95 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 95 ~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+..+...++|+++|+||+|+.+....+..+.+.+.+. .. .+++++||++|.|+++++..+..
T Consensus 108 l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~------------~~--~~~~~~SAktg~gv~~lf~~l~g---- 169 (301)
T 1u0l_A 108 LVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS------------GL--YPIVKTSAKTGMGIEELKEYLKG---- 169 (301)
T ss_dssp HHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHT------------TT--SCEEECCTTTCTTHHHHHHHHSS----
T ss_pred HHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHh------------hh--CcEEEEECCCCcCHHHHHHHhcC----
Confidence 2334556899999999999964211001112222111 01 36788999999999999886641
Q ss_pred cccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 175 ISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
..++++|++|+|||||++.|...
T Consensus 170 -------------------------eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 -------------------------KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp -------------------------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred -------------------------CeEEEECCCCCcHHHHHHHhccc
Confidence 24899999999999999999743
No 235
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.45 E-value=2.5e-15 Score=169.79 Aligned_cols=175 Identities=14% Similarity=0.072 Sum_probs=114.3
Q ss_pred ecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCC-CHHHHHHH
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQ 342 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~-~~~~~~~~ 342 (1043)
|+++.++||||||+.++... ..+.+|++++|+|+..+...+.... ...++|.++|+||+|+.+. +....+++
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHH
Confidence 67899999999999887654 3589999999999986643222111 1135799999999999753 33444455
Q ss_pred HHHHhC---C-----CceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcCC
Q psy11896 343 MRQKVG---H-----NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGD 414 (1043)
Q Consensus 343 i~~~l~---~-----~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~d 414 (1043)
+.+.++ . .+..+.+....+.++.++.+.+......|.. | ..+|. ....++|..+.|.+ +
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~--~-----~~~~~---~r~~~~~~~~~e~i---~ 285 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA--S-----GRLQQ---VRQQQSVEWLRKQT---E 285 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH--T-----THHHH---HHHHHHHHHHHHHH---H
T ss_pred HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh--C-----ChHHH---HHHHHHHHHHHHHH---H
Confidence 555332 1 1112233334666777777766654433321 1 12221 22344667777776 7
Q ss_pred hHHHHHHhccCCCCHHHHHHHHHHhhhcCccEEEEEeeccCCCCHHHHHHHHHH
Q psy11896 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLD 468 (1043)
Q Consensus 415 d~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~Lld~i~~ 468 (1043)
+.++++|+++ ++.+++..++++++..+.+.|++| .+.|++.+..
T Consensus 286 e~l~~~~~~~--~~~~~~~~~l~~~v~~~~~~P~~~--------~~~~~~~~~~ 329 (341)
T 2p67_A 286 EEVLNHLFAN--EDFDRYYRQTLLAVKNNTLSPRTG--------LRQLSEFIQT 329 (341)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHTTSSCHHHH--------HHHHHHHHHC
T ss_pred HHHHHHHHhC--cchhHHHHHHHHHHHhCCCCHHHH--------HHHHHHHHhh
Confidence 8899999995 788899999999999999999987 4678877755
No 236
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=143.33 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=77.1
Q ss_pred CCccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEc
Q psy11896 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIID 273 (1043)
Q Consensus 194 ~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 273 (1043)
++..+..+|+++|.+|+|||||+++|+....... + ....+.+. .....+......+.|||
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~---~~t~~~~~-~~~~~~~~~~~~~~l~D 78 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG----------------Y---DPTVENTY-SKIVTLGKDEFHLHLVD 78 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSC----------------C---CCCSEEEE-EEEEC----CEEEEEEE
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC----------------C---CCccceEE-EEEEEECCEEEEEEEEE
Confidence 3445678999999999999999999984321100 0 00111111 22222334567899999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|......+++.+|++++|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp ECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred CCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 999999988888888999999999999975433333333 2222 2478999999999975
No 237
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.45 E-value=4.7e-14 Score=142.08 Aligned_cols=154 Identities=14% Similarity=0.045 Sum_probs=104.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 6 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 6 SFKVVLL-GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEE-CcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 3677788 9999999999877777777777777777776666666655 478999999999988888888999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++..+..... .+..+. ..++|+++|+||+|+.+.. ..+....+.+.. . .+++++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~---~~~~~~ 148 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV-------------G---AKHYHT 148 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT-------------T---CEEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHc-------------C---CeEEEe
Confidence 99998643322222 122222 2478999999999986421 111112222211 1 356889
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+...+
T Consensus 149 Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 149 SAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 238
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.44 E-value=1.3e-13 Score=143.04 Aligned_cols=163 Identities=14% Similarity=0.076 Sum_probs=108.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe---cCeeEEEEeCCCCcchHHHH---HHHhhhcC
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW---KDHNINIIDTPGHVDFTVEV---ERALRVLD 75 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~---~~~~~~aD 75 (1043)
.+|+.++ |+.++||+|... ++.+.+..+...|++.......+.+ ...++.||||||+.+|.... ..+++.+|
T Consensus 20 ~~ki~~v-G~~~vGKTsLi~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (196)
T 3llu_A 20 KPRILLM-GLRRSGKSSIQK-VVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTG 97 (196)
T ss_dssp CCEEEEE-ESTTSSHHHHHH-HHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCS
T ss_pred ceEEEEE-CCCCCCHHHHHH-HHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCC
Confidence 5788888 999999999954 5666666666666665555555443 34689999999999987776 78999999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHh-----cCCCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 76 GAILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 76 ~iIlVvDa~~~~~~~~~~~~~~l~~-----~~~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
++|+|+|+++........+..++.. .++|+++|+||+|+...+.. .....+.......+... . ......+
T Consensus 98 ~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~-~---~~~~~~~ 173 (196)
T 3llu_A 98 ALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA-G---LEKLHLS 173 (196)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT-T---CTTSCEE
T ss_pred EEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh-h---hhcCCcc
Confidence 9999999998643444444444443 37899999999998752210 00111111111000000 0 0011246
Q ss_pred eeeeeecccCCcchHHHHHHhh
Q psy11896 150 NIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
++.+||++ .|++++++.+...
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHH
T ss_pred eEEEEech-hhHHHHHHHHHHH
Confidence 78899999 9999999988753
No 239
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.44 E-value=5.3e-14 Score=144.49 Aligned_cols=153 Identities=12% Similarity=0.138 Sum_probs=114.4
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH------HHHHHHhh--hc
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT------VEVERALR--VL 74 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~------~~~~~~~~--~a 74 (1043)
+|+.++ |..++||+|.......+....+..||+|++.....+.+++..+.+|||||+.++. ..+..+++ .+
T Consensus 8 ~~i~lv-G~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T 2wjg_A 8 YEIALI-GNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 86 (188)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCC
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCC
Confidence 577777 9999999999888877777788889999999889999999999999999998763 33445554 49
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|++++|+|++. .......+..+...++|+++|+||+|+.... .....+.+.+.++ .+++++
T Consensus 87 ~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 148 (188)
T 2wjg_A 87 DLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILG----------------VKVVPL 148 (188)
T ss_dssp SEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------SCEEEC
T ss_pred CEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhC----------------CCeEEE
Confidence 99999999874 2233334455566789999999999984311 0011223332221 256889
Q ss_pred eecccCCcchHHHHHHhhccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
||++|.|++++++.+......
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTT
T ss_pred EecCCCCHHHHHHHHHHHHHh
Confidence 999999999999999876654
No 240
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=1.3e-13 Score=142.37 Aligned_cols=154 Identities=16% Similarity=0.040 Sum_probs=106.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhc--CCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQR--GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~--G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+ |+|.......+.....++.||||||+.++...+..+++.+|++|+|
T Consensus 24 ~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV 102 (192)
T 2fg5_A 24 LKVCLL-GDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIV 102 (192)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEE
Confidence 677788 9999999999877776665544444 4343333233223456899999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++........ .+..+.. .++|+++|+||+|+.... ..+....+.+. .. .+++++|
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-------------~~---~~~~~~S 166 (192)
T 2fg5_A 103 YDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-------------IG---AIVVETS 166 (192)
T ss_dssp EETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-------------TT---CEEEECB
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-------------cC---CEEEEEe
Confidence 9998654333322 2222333 378999999999986321 11111222111 11 3678999
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 167 a~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 167 AKNAINIEELFQGISRQIP 185 (192)
T ss_dssp TTTTBSHHHHHHHHHHTCC
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999987654
No 241
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.44 E-value=1.3e-13 Score=138.78 Aligned_cols=154 Identities=18% Similarity=0.034 Sum_probs=107.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+....+.....+...+ .++.+|||||+.++...+..+++.+|++++|
T Consensus 7 ~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 85 (170)
T 1z0j_A 7 LKVCLL-GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIV 85 (170)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEE
Confidence 677888 9999999999877777766555455444433334444443 6799999999999998899999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++........ .+..+.. .++|+++|+||+|+.+.. ..+....+.... ..+++++|
T Consensus 86 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~~S 149 (170)
T 1z0j_A 86 YDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI----------------HAIFVETS 149 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TCEEEECB
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc----------------CCEEEEEe
Confidence 9998654433322 2233332 357899999999986421 111122222111 13678999
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 150 a~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 150 AKNAININELFIEISRRIP 168 (170)
T ss_dssp TTTTBSHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999986553
No 242
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.44 E-value=1.8e-13 Score=137.73 Aligned_cols=154 Identities=12% Similarity=0.011 Sum_probs=95.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHH-HHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTV-EVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~-~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...........+..|.+.....+..++ ..+.+|||||+.++.. .+..+++.+|+++
T Consensus 2 ~~ki~iv-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLV-GESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 4788888 9999999999877766666666666667777667777766 4688999999998876 5566788999999
Q ss_pred EEEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++..+.... ..+..+.. .++|+++|+||+|+.+.. .......+.+.+ ..+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~ 144 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL----------------SCKHI 144 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TCEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc----------------CCcEE
Confidence 99999863222221 12222222 278999999999986321 111122222211 12568
Q ss_pred eeeecccCCcchHHHHHHhhc
Q psy11896 152 GISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++||++|.|++++++.+...+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 145 ETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHH
Confidence 899999999999999987654
No 243
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.44 E-value=1.6e-14 Score=152.86 Aligned_cols=156 Identities=14% Similarity=0.062 Sum_probs=109.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhh--hhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELE--RQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e--~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...++..+.+... .++|+|+......+...+..+.||||||+.++...+..+++.+|++|+
T Consensus 15 ~~ki~v~-G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 93 (221)
T 3gj0_A 15 QFKLVLV-GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 93 (221)
T ss_dssp EEEEEEE-ECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEE
Confidence 3688888 9999999999887676655444 455666665555544455689999999999988888899999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+|+++..+......| ..+.. .++|+++|+||+|+.+.........+... ...+++.+||+
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~ 157 (221)
T 3gj0_A 94 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK----------------KNLQYYDISAK 157 (221)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHH----------------HTCEEEECBGG
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHH----------------cCCEEEEEeCC
Confidence 9999864433332222 22222 27899999999999753221100011110 11367889999
Q ss_pred ccCCcchHHHHHHhhccc
Q psy11896 157 IDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~~ 174 (1043)
+|.|++++++.+...+..
T Consensus 158 ~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 158 SNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp GTBTTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999876643
No 244
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.44 E-value=1.2e-13 Score=145.71 Aligned_cols=116 Identities=21% Similarity=0.162 Sum_probs=78.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
....+|+++|.+|+|||||+++|+...-.. . .....+.+...... ....+ ..+.+|||
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~------------------~~~t~~~~~~~~~~-~~~~~~~~~~~l~Dt 68 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEK-N------------------YNATVGAVNHPVTF-LDDQGNVIKFNVWDT 68 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTC-E------------------EETTTTEEEEEEEE-EBTTSCEEEEEEEEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCC-C------------------CCCccceeeEEEEE-EeCCCcEEEEEEEec
Confidence 345789999999999999999997322110 0 00111222211111 11112 67999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH---HhcCCCeEEEEeccCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~---~~~~~p~ivviNKiD~~ 332 (1043)
||+.+|.......++.+|++|+|+|+.++...+....| ..+ ...++|+++|+||+|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 69 AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp CSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999887778888999999999999987655554333 222 23468999999999986
No 245
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.44 E-value=1.5e-14 Score=150.32 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=78.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
+...+|+++|+.|+|||||+++|+..... .+....++.......+.+++ ..+.||||
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 89 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYT---------------------ESYISTIGVDFKIRTIELDGKTIKLQIWDT 89 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCC---------------------CHHHHHHCCSEEEEEEEETTEEEEEEEECC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCcCCcccceEEEEEEEECCEEEEEEEEEC
Confidence 45789999999999999999999632110 11122233333444455555 67999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHh---cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~ 333 (1043)
||+.+|......+++.+|++++|+|+.+.........|. .+.. .++|+++|+||+|+..
T Consensus 90 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp TTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred CCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 999999888888889999999999999865444433332 2322 2789999999999863
No 246
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.44 E-value=3.5e-14 Score=153.80 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=96.6
Q ss_pred CCCCcc-hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 57 TPGHVD-FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 57 TPG~~~-~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
.|||.. ....+...+..+|++++|+|++++.......+. ++ ++|.++|+||+|+.+. . ..+.+.+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~--~-~~~~~~~~~~---- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADE--K-TTKKWVEFFK---- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCH--H-HHHHHHHHHH----
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCH--H-HHHHHHHHHH----
Confidence 489874 567889999999999999999977665433222 22 8999999999999752 1 1222222221
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccH
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 215 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL 215 (1043)
. .. .++ .+||+++.|+++|++.+...+ .+++++|.+|+|||||
T Consensus 73 ~--------~g-~~v-~iSa~~~~gi~~L~~~l~~~~---------------------------~~v~~vG~~~vGKSsl 115 (262)
T 3cnl_A 73 K--------QG-KRV-ITTHKGEPRKVLLKKLSFDRL---------------------------ARVLIVGVPNTGKSTI 115 (262)
T ss_dssp H--------TT-CCE-EECCTTSCHHHHHHHHCCCTT---------------------------CEEEEEESTTSSHHHH
T ss_pred H--------cC-CeE-EEECCCCcCHHHHHHHHHHhh---------------------------hheEEeCCCCCCHHHH
Confidence 0 01 245 799999999998887664221 5699999999999999
Q ss_pred HhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 216 TERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 216 ~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|+|+..... . .....|+|....... -+..+.+|||||..+.
T Consensus 116 in~l~~~~~~--~------------------~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 116 INKLKGKRAS--S------------------VGAQPGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp HHHHHTTCC------------------------------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred HHHHhccccc--c------------------cCCCCCCccceEEEE---eCCCEEEEECCCcccC
Confidence 9999743211 0 112345555443222 2457899999997654
No 247
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.44 E-value=2e-13 Score=143.32 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=76.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDt 274 (1043)
....+|+++|++|+|||||+++|+...-. . ++. ...+... ...+.++ ...+.+|||
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~--~--------------~~~---~t~~~~~---~~~~~~~~~~~~~~i~Dt 64 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--T--------------DYI---PTVFDNF---SANVAVDGQIVNLGLWDT 64 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC--S--------------SCC---CSSCCCE---EEEEECSSCEEEEEEECC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--c--------------cCC---CccceeE---EEEEEECCEEEEEEEEEC
Confidence 34578999999999999999999733210 0 000 0011111 1122333 368999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
||+.+|......+++.+|++|+|+|+.+........ .| ..+... ++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 65 AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp CCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 999999888888899999999999998754433332 23 333332 889999999999753
No 248
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.44 E-value=2.6e-13 Score=140.29 Aligned_cols=116 Identities=13% Similarity=0.026 Sum_probs=78.5
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
..+..+|+++|.+|+|||||+++|+...-... ...++.......+.+++ ..+.+||
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----------------------~~~t~~~~~~~~~~~~~~~~~~~i~D 77 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTA----------------------YVPTVFENFSHVMKYKNEEFILHLWD 77 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS----------------------CCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCc----------------------cCCeeeeeeEEEEEECCEEEEEEEEE
Confidence 34567899999999999999999974321000 00011111111233333 5679999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
|||+.+|......+++.+|++++|+|+.+....... ..| ..+.. .++|+++|+||+|+..
T Consensus 78 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 78 TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred CCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 999999988888889999999999999976444332 223 22222 3689999999999864
No 249
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.43 E-value=1.9e-13 Score=160.29 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=116.6
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCc-chH--------HHHHHHhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHV-DFT--------VEVERALR 72 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~-~~~--------~~~~~~~~ 72 (1043)
+|+.++ |..++||+|...+.+.... .....||+|+++....+.+++..+.||||||+. ++. ..+..+++
T Consensus 244 ~kV~iv-G~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 244 LRMVIV-GKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp EEEEEE-CCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CEEEEE-CcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 678888 9999999999766665543 356789999999999999999999999999998 542 44677899
Q ss_pred hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 73 ~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
.+|++|+|+|++++...++..++..+ .++|+++|+||+|+..... .+.+.+.+. . ..++++
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~---~~~~~~~~~-----------~---~~~~i~ 383 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN---EEEIKNKLG-----------T---DRHMVK 383 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC---HHHHHHHHT-----------C---STTEEE
T ss_pred cccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccC---HHHHHHHhc-----------C---CCcEEE
Confidence 99999999999987777776666655 4789999999999975311 122222110 0 135689
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|+++|++.+...+
T Consensus 384 iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 384 ISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp EEGGGTCCHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998654
No 250
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.43 E-value=7e-14 Score=145.54 Aligned_cols=153 Identities=14% Similarity=0.032 Sum_probs=103.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 26 ~ki~v~-G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 104 (200)
T 2o52_A 26 FKFLVI-GSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 104 (200)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence 677888 9999999999888888888777788877777777777776 6899999999998888888899999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCC---CHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGA---DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++........ .+..+. ..++|+++|+||+|+... ...+. ..+... . ..+++++
T Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~-------------~---~~~~~~~ 167 (200)
T 2o52_A 105 YDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEA-SRFAQE-------------N---ELMFLET 167 (200)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHH-------------T---TCEEEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHH-HHHHHH-------------c---CCEEEEE
Confidence 9998643322222 222222 247899999999998532 11111 111111 1 1367889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 168 SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 168 SALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876553
No 251
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=4.6e-13 Score=140.08 Aligned_cols=113 Identities=14% Similarity=0.034 Sum_probs=76.6
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|..|+|||||+++|+....... + ....+.+.. ..+..++ ..+.+|||||
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~---~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G 82 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEV----------------Y---VPTVFENYV---ADIEVDGKQVELALWDTAG 82 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------------------------CCEEE---EEEEETTEEEEEEEEECTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCc----------------C---CCcccceEE---EEEEECCEEEEEEEEECCC
Confidence 46899999999999999999974321100 0 001111111 1233343 5789999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH--HHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~--~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+......... ..+..+... ++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp CTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred cHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 999988777888999999999999874332222 223333333 899999999999864
No 252
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.43 E-value=1.3e-13 Score=138.07 Aligned_cols=153 Identities=18% Similarity=0.089 Sum_probs=105.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++ +.....+..++. .+.+|||||+.++...+..+++.+|++++
T Consensus 3 ~~~i~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 3 EYKVVVL-GSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 3688888 9999999999777666665544444333 333445555554 59999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HH----HHHHhcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT-VN----RQMKRYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~----~~l~~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++........ .+ ......++|+++|+||+|+.... .......+...+ ..++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 144 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW----------------GCPFME 144 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----------------TSCEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh----------------CCCEEE
Confidence 99998643322211 12 22223478999999999985421 111112222211 125788
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.+...+
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999987654
No 253
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.43 E-value=3.6e-14 Score=155.24 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=118.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH------HHHHHh--hh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV------EVERAL--RV 73 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~------~~~~~~--~~ 73 (1043)
.+|+.++ |..++||||...+.+.........||+|++.....+.+++..+.+|||||+.++.. .+..++ ..
T Consensus 3 ~~~i~lv-G~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALV-GNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEE-ECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 3677777 99999999998888888777888999999999999999999999999999987554 344455 67
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcC-CCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~-~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|++++|+|++.. ......+.++...+ +|+++|+||+|+.... .......+.+.++ .+++
T Consensus 82 ~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----------------~~~~ 143 (271)
T 3k53_A 82 ADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG----------------VPVI 143 (271)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----------------SCEE
T ss_pred CcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcC----------------CcEE
Confidence 9999999999863 44555566666777 9999999999974210 0001233433331 3678
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++||++|.|++++++.+.....
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999986643
No 254
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.43 E-value=1.8e-13 Score=142.83 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=60.3
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEec----CeeEEEE
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINII 272 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~li 272 (1043)
....+|+++|+.|+|||||+++|+........ +....+..+.....+.++ ...+.+|
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~l~ 78 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK-------------------DYAMTSGVEVVVAPVTIPDTTVSVELFLL 78 (208)
T ss_dssp EEEEEEEEC-----------------------------------------------------CEEEECTTSSEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC-------------------CCCCccceEEEEEEEEECCcccEEEEEEE
Confidence 45578999999999999999999743111100 001111112223334455 4589999
Q ss_pred cCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh------cCCCeEEEEeccCCCC
Q psy11896 273 DTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 273 DtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~------~~~p~ivviNKiD~~~ 333 (1043)
||||+.+|......+++.+|++++|+|+.++........| ..+.. .++|+++|+||+|+..
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp ETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred ECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 9999999888888888999999999999876543333333 33332 4789999999999763
No 255
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.43 E-value=2.1e-13 Score=140.11 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=108.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCC-----------cchHHHHHHH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH-----------VDFTVEVERA 70 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~-----------~~~~~~~~~~ 70 (1043)
++|+.++ |..++||+|...+...+.+.....||+|++.....+ . ++.+|||||+ ..+...+..+
T Consensus 1 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 1 MATIIFA-GRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp -CEEEEE-EBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 4788888 999999999988888888888889999987765443 2 7999999994 4455555555
Q ss_pred hhh----cCEEEEEEeCCCC-----------CchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc
Q psy11896 71 LRV----LDGAILVLCAVGG-----------VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS 135 (1043)
Q Consensus 71 ~~~----aD~iIlVvDa~~~-----------~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~ 135 (1043)
++. ++++++|+|+... ...++..+...+...++|+++|+||+|+.... .+..+.+.+.++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~---- 150 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFE---- 150 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHT----
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhh----
Confidence 554 5677777776521 11122334445556789999999999997533 333444444432
Q ss_pred cccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 136 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 136 ~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.. +.....+++++||++|.|++++++.+...+.
T Consensus 151 ---~~--~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 151 ---VP--LSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp ---CC--GGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---hh--hhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 10 0000135789999999999999999987654
No 256
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.43 E-value=1.6e-13 Score=144.75 Aligned_cols=158 Identities=14% Similarity=0.035 Sum_probs=107.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC---eeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD---HNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++.......+...+ ..+.||||||+.++...+..+++.+|++|
T Consensus 11 ~~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 11 TYKICLI-GDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp EEEEEEE-CCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred ccEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 4688888 9999999999888877776654444444333333333322 57999999999998888888999999999
Q ss_pred EEEeCCCCCchhHHHHH-HHH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 79 LVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 79 lVvDa~~~~~~~~~~~~-~~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+|++++.+.+....| ..+ ...++|+++|+||+|+...... ..+...... . ....+++++|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~----------~---~~~~~~~~~S 155 (218)
T 4djt_A 90 LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI-SKKLVMEVL----------K---GKNYEYFEIS 155 (218)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C-CHHHHHHHT----------T---TCCCEEEEEB
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc-CHHHHHHHH----------H---HcCCcEEEEe
Confidence 99999875443333221 222 2236899999999998643110 011111111 0 1123679999
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+..
T Consensus 156 a~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999877654
No 257
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.43 E-value=7.2e-13 Score=142.71 Aligned_cols=123 Identities=18% Similarity=0.156 Sum_probs=92.6
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.-.+|+++|++|+|||||+|+|+........ ....++|.........+++..++||||||.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~-------------------~~~~~~T~~~~~~~~~~~~~~i~liDTPG~ 80 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSR-------------------LGATSVTRACTTGSRRWDKCHVEVVDTPDI 80 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC----------------------------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCcccc-------------------CCCCCccccEEEEEEEECCcEEEEEECCCC
Confidence 3478999999999999999999855433211 012346777777778899999999999998
Q ss_pred --------CCchHHHHHHh----HhcCeEEEEEeCCCCcchHHHHHHHHHHhc------CCCeEEEEeccCCCCCCHHHH
Q psy11896 278 --------VDFTVEVERAL----RVLDGAILVLCAVGGVQSQTLTVNRQMKRY------DVPCIAFINKLDRLGADPYRV 339 (1043)
Q Consensus 278 --------~df~~e~~~~l----~~~D~~ilVvda~~g~~~~t~~~~~~~~~~------~~p~ivviNKiD~~~~~~~~~ 339 (1043)
.+|..++.+++ +.+|++|+|+|+.. ........++.+.+. +.|+++|.||+|+...+.++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~ 159 (247)
T 3lxw_A 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDY 159 (247)
T ss_dssp SSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHH
Confidence 55677777776 89999999999985 667777777666553 789999999999987766544
Q ss_pred H
Q psy11896 340 I 340 (1043)
Q Consensus 340 ~ 340 (1043)
+
T Consensus 160 l 160 (247)
T 3lxw_A 160 V 160 (247)
T ss_dssp H
T ss_pred H
Confidence 3
No 258
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.43 E-value=4.4e-13 Score=138.96 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=107.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHH-HHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTV-EVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~-~~~~~~~~aD~iI 78 (1043)
.+|+.++ |+.++||+|...+...........+++|.+.....+.+++. ++.+|||||+.++.. .+..+++.+|++|
T Consensus 23 ~~ki~vv-G~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 23 IFKVMLV-GESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 4688888 99999999997776544444456677787777777777664 688999999988765 5667789999999
Q ss_pred EEEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++..+.... ..+..+.. .++|+++|+||+|+..... .+....+...+ . .+++
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~-------------~---~~~~ 165 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL-------------S---CKHI 165 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT-------------T---CEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHh-------------C---CEEE
Confidence 99999863322221 22222322 3789999999999964321 11112222211 1 2568
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+||++|.|++++++.+...+.
T Consensus 166 e~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 166 ETSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999886553
No 259
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=154.06 Aligned_cols=157 Identities=12% Similarity=0.023 Sum_probs=109.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVv 81 (1043)
.+|+.++ |..++||+|...+...+.+.. ..| |++.....+.+.+.++.||||||+.++...+..+++.+|++|+|+
T Consensus 165 ~~kI~iv-G~~~vGKSsLl~~l~~~~~~~-~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~ 240 (329)
T 3o47_A 165 EMRILMV-GLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 240 (329)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHTCSSCCEE-EEE--ETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred cceEEEE-CCCCccHHHHHHHHhCCCCCC-ccc--ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 3578888 999999999977776666543 334 777777888889999999999999999988999999999999999
Q ss_pred eCCCCCchhH--HHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeec
Q psy11896 82 CAVGGVQSQT--LTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH 156 (1043)
Q Consensus 82 Da~~~~~~~~--~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~ 156 (1043)
|+++...... ..+...+.. .++|+++|+||+|+.+.... +++...++. .. ......+++++||+
T Consensus 241 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~i~~~~~~-------~~-~~~~~~~~~~vSAk 309 (329)
T 3o47_A 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA---AEITDKLGL-------HS-LRHRNWYIQATCAT 309 (329)
T ss_dssp ETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---HHHHHHHTC-------TT-CCSSCEEEEECBTT
T ss_pred ECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH---HHHHHHhch-------hh-hhcCCCEEEEEECC
Confidence 9986444332 223333332 37899999999999764322 223322211 00 11123478899999
Q ss_pred ccCCcchHHHHHHhhcc
Q psy11896 157 IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 157 ~g~Gi~~L~~~l~~~l~ 173 (1043)
+|.|+++|++.+...+.
T Consensus 310 ~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 310 SGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp TTBTHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999986553
No 260
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=4.2e-14 Score=145.92 Aligned_cols=155 Identities=16% Similarity=0.039 Sum_probs=108.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEE--ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~--~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+..+.+.....+. ..+..+.||||||+.++...+..+++.+|++|+
T Consensus 23 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 23 MFKLLII-GNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeEEEEE-CCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 4788888 9999999999877776665555444443333333333 356689999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++...... ...+..+.. .++|+++|+||+|+.... .......+...++ .+++++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 165 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG----------------FDFFEA 165 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------CEEEEC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC----------------CeEEEE
Confidence 999986432222 222333333 478999999999985421 1112222222211 257889
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|++++++.+...+.
T Consensus 166 Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 166 SAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999886553
No 261
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.42 E-value=3.5e-13 Score=140.28 Aligned_cols=114 Identities=15% Similarity=0.043 Sum_probs=77.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|..|+|||||+++|+........ ...++... ...+.+++ ..+.+||||
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---------------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~ 81 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY---------------------VPTVFENY-IADIEVDGKQVELALWDTA 81 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSC---------------------CCSSCCCC-EEEEEETTEEEEEEEECCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCccc---------------------CCcccceE-EEEEEECCEEEEEEEEECC
Confidence 3468999999999999999999743211000 00011111 11133333 588999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH--HHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~--~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
|+.+|......+++.+|++++|+|+......+.. .....+... ++|+++|+||+|+..
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 82 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred CchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 9999888777788999999999999874333322 223333333 899999999999875
No 262
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.42 E-value=8.3e-14 Score=143.39 Aligned_cols=154 Identities=15% Similarity=0.056 Sum_probs=108.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+... ...+.||||||+.++...+..+++.+|++|+|
T Consensus 23 ~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 101 (189)
T 2gf9_A 23 FKLLLI-GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM 101 (189)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence 677788 999999999987777777665555555544444444444 45899999999999888888899999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++....... ..+..+.. .++|+++|+||+|+.... ..+....+.+.++ .+++++|
T Consensus 102 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~S 165 (189)
T 2gf9_A 102 YDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG----------------FEFFEAS 165 (189)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----------------CEEEECB
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC----------------CeEEEEE
Confidence 999864332222 22233333 378999999999986421 1112222222211 2678999
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 166 a~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 166 AKENINVKQVFERLVDVIC 184 (189)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 263
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.42 E-value=5.9e-14 Score=163.92 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=78.2
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|++|+|||||+|+|+.....+ .....|+|.+.....+.+++..++||||||+.+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------------v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAI--------------------VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSC--------------------CSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCccc--------------------ccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 469999999999999999998543221 111345666655556778899999999999987
Q ss_pred chHHHHH--------HhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 280 FTVEVER--------ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 f~~e~~~--------~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+...+.. +++.+|++++|+|+.++...+...++..+. ..|+++|+||+|+..
T Consensus 285 ~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~ 344 (462)
T 3geh_A 285 TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVE 344 (462)
T ss_dssp --------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSC
T ss_pred chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCc
Confidence 6654433 457899999999999998888877777664 379999999999874
No 264
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.42 E-value=5.1e-13 Score=159.30 Aligned_cols=112 Identities=16% Similarity=0.073 Sum_probs=84.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|.+|+|||||+++|+..... . ...|+......+.+++..+.||||||+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~----------------------~~~T~~~~~~~~~~~~~~~~l~Dt~G~ 376 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--T----------------------TIPTVGFNVETVTYKNVKFNVWDVGGQ 376 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--C----------------------CCCCSSEEEEEEESSSCEEEEEEECCC
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--C----------------------cCCccceeEEEEEeCCEEEEEEECCCc
Confidence 4578999999999999999999743210 0 011344445567788999999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHH-HHHHH----hcCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMK----RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~-~~~~~----~~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++|+|+|+.+....+.... +.... ..++|+++|+||+|+..
T Consensus 377 ~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp GGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred HHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 9998888889999999999999998644333322 22222 24789999999999864
No 265
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.42 E-value=2.5e-13 Score=139.23 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=106.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.. ..++++.+.....+..++. .+.||||||+.++...+..+++.+|++++
T Consensus 4 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 4 EYKLVVV-GADGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSSCCC-CCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHhCCCCC-CCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4688888 999999999976666555433 3344555555556666665 47889999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
|+|+++........ .+..+. ..++|+++|+||+|+.... ..+....+...++ .+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 145 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG----------------IPFIET 145 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT----------------CCEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC----------------CeEEEE
Confidence 99998643322222 122222 2478999999999997532 2222333333221 256889
Q ss_pred eecccCCcchHHHHHHhhccc
Q psy11896 154 SAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
||++|.|++++++.+...+..
T Consensus 146 Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 146 SAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999877654
No 266
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.42 E-value=1.1e-12 Score=134.65 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=73.9
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
..+..+|+++|..|+|||||+++|+...-.. .+.+ |.......+.+++ ..+.+||
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~----------------~~~~-------t~~~~~~~~~~~~~~~~l~i~D 73 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQ----------------EESP-------EGGRFKKEIVVDGQSYLLLIRD 73 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCC----------------CCCT-------TCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCC----------------CcCC-------CcceEEEEEEECCEEEEEEEEE
Confidence 3445789999999999999999997421100 0000 1111112344454 5678899
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
|||+.+|. .++.+|++++|+|+.+....+....| ..+.. .++|+++|.||+|+.
T Consensus 74 t~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 74 EGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp CSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred CCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999886 77889999999999986544443333 33333 467999999999985
No 267
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.42 E-value=3.7e-13 Score=138.18 Aligned_cols=122 Identities=27% Similarity=0.367 Sum_probs=74.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC-
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV- 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~- 278 (1043)
.+|+++|++|+|||||+++|+...-. .+..+|+|..... +.+. .+.+|||||+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~---------------------~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR---------------------RGKRPGVTRKIIE--IEWK--NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS---------------------SSSSTTCTTSCEE--EEET--TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc---------------------cCCCCCccceeEE--EecC--CEEEEECCCccc
Confidence 57999999999999999999743210 1112344443333 2333 78999999953
Q ss_pred ----------CchHHHHHHhH----hcCeEEEEEeCCCC-----------cchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 279 ----------DFTVEVERALR----VLDGAILVLCAVGG-----------VQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 ----------df~~e~~~~l~----~~D~~ilVvda~~g-----------~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.|.......++ .+++++.|+|+... ...++..+...+...++|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 57 MMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccC
Confidence 34444444444 45677777776532 122233445556667899999999999875
Q ss_pred CCHHHHHHHHHHHh
Q psy11896 334 ADPYRVINQMRQKV 347 (1043)
Q Consensus 334 ~~~~~~~~~i~~~l 347 (1043)
.. .+..+++.+.+
T Consensus 137 ~~-~~~~~~~~~~~ 149 (190)
T 2cxx_A 137 NV-QEVINFLAEKF 149 (190)
T ss_dssp CH-HHHHHHHHHHH
T ss_pred cH-HHHHHHHHHHh
Confidence 43 33334443333
No 268
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.42 E-value=2.5e-13 Score=141.15 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=76.8
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liD 273 (1043)
..+..+|+++|+.|+|||||+++|+... .. +....++.......+.+++ ..+.+||
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~~i~D 74 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG--YP--------------------TEYIPTAFDNFSAVVSVDGRPVRLQLCD 74 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC------------------------------CCSSEEEEEEEEETTEEEEEEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CC--------------------CCCCCcccceeEEEEEECCEEEEEEEEE
Confidence 3456789999999999999999997432 10 0011111111122344454 4677999
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
|||+.+|......+++.+|++++|+|+.+........ .| ..+.. .++|+++|+||+|+..
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 75 TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp CCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred CCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 9999998877777889999999999998754433332 22 22332 3889999999999864
No 269
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.42 E-value=3.1e-13 Score=148.02 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=84.4
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|++|+|||||+|+|+.......... + .......++++......+.+++ ..+++|||||
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~----~---------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG 74 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYP----G---------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPG 74 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC----------------------------CCCEEEEEEECC--CCEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCC----C---------cccccCCceEEEEEEEEEecCCeEEEEEEEECCC
Confidence 46899999999999999999974432221100 0 0011133444444445555555 4899999999
Q ss_pred CCCc-------hHHH-------HHHhHh-------------cCeEEEEEeCC-CCcchHHHHHHHHHHhcCCCeEEEEec
Q psy11896 277 HVDF-------TVEV-------ERALRV-------------LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINK 328 (1043)
Q Consensus 277 ~~df-------~~e~-------~~~l~~-------------~D~~ilVvda~-~g~~~~t~~~~~~~~~~~~p~ivviNK 328 (1043)
+.++ ...+ ..+++. +|+++++++.. +++......+++.+.. ++|+++|+||
T Consensus 75 ~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK 153 (274)
T 3t5d_A 75 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 153 (274)
T ss_dssp CSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEec
Confidence 8543 2222 344443 67888888665 5888999888888876 8999999999
Q ss_pred cCCCCCC-HHHHHHHHHHHh
Q psy11896 329 LDRLGAD-PYRVINQMRQKV 347 (1043)
Q Consensus 329 iD~~~~~-~~~~~~~i~~~l 347 (1043)
+|+.... .....+.+.+.+
T Consensus 154 ~D~~~~~e~~~~~~~i~~~l 173 (274)
T 3t5d_A 154 ADTLTPEECQQFKKQIMKEI 173 (274)
T ss_dssp GGGSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 9987432 223334455544
No 270
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=1.1e-12 Score=135.80 Aligned_cols=114 Identities=21% Similarity=0.134 Sum_probs=74.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|++|+|||||+++|+...-... + ....+... .....+......+.+|||||+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~----------------~---~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~ 86 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE----------------Y---DPTLESTY-RHQATIDDEVVSMEILDTAGQ 86 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC----------------C---CTTCCEEE-EEEEEETTEEEEEEEEECCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc----------------c---CCCCCceE-EEEEEECCEEEEEEEEECCCC
Confidence 346899999999999999999974321100 0 00111111 111122223467999999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HHHHH----HhcCCCeEEEEeccCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~~~~----~~~~~p~ivviNKiD~~ 332 (1043)
.+ .......++.+|++++|+|+.+........ .+..+ ...++|+++|+||+|+.
T Consensus 87 ~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 87 ED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp CC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred Cc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 88 666778889999999999998643222111 12222 23588999999999975
No 271
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.42 E-value=7.6e-14 Score=145.70 Aligned_cols=157 Identities=16% Similarity=0.038 Sum_probs=113.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 8 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 8 LLKVIIL-GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred ceEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence 3677788 9999999999888777777777777777777766666655 579999999999888888888999999999
Q ss_pred EEeCCCCCchhHHHHH-HHHH-h------cCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMK-R------YDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~-~------~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|++++........| ..+. . .++|+++|+||+|+..... .+....+... ....++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------~~~~~~ 151 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS---------------KNNIPY 151 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---------------TTSCCE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh---------------cCCceE
Confidence 9999864332222211 1121 1 4789999999999974321 1111121110 112357
Q ss_pred eeeeecccCCcchHHHHHHhhccc
Q psy11896 151 IGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+++||++|.|++++++.+...+..
T Consensus 152 ~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 152 FETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999876643
No 272
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.42 E-value=2.1e-13 Score=136.63 Aligned_cols=154 Identities=16% Similarity=0.051 Sum_probs=104.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.+.. .....+..+ +.++.+|||||+.++...+..+++.+|++++
T Consensus 3 ~~ki~v~-G~~~~GKssli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 3 EYKLVVL-GSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHCCCCCSCCCCSEE-EEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCCccc-eEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3688888 99999999997777666655544443332 222333443 3479999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHH----hcCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMK----RYDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~----~~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+... ...+..+. ..++|+++|+||+|+.+... .+....+.+. ....++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 145 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ---------------WCNCAFLE 145 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH---------------TTSCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH---------------ccCCcEEE
Confidence 999986322222 11222222 24789999999999864211 1111222211 11246789
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.+...+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999987643
No 273
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.42 E-value=1.6e-13 Score=158.80 Aligned_cols=161 Identities=20% Similarity=0.153 Sum_probs=110.9
Q ss_pred CccceeeeeecccccccCCccccCCChh---------------hhhhcCCccccceEEE-----EecCeeEEEEeCCCCc
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSME---------------LERQRGITIQSAATYT-----LWKDHNINIIDTPGHV 61 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~---------------~e~~~G~T~~~~~~~~-----~~~~~~i~liDTPG~~ 61 (1043)
.+|+.++ |..++||+|...+.+..... .+...+.+.+...... .....+++|||||||.
T Consensus 8 ~~~I~vv-G~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 8 EVNIGVV-GHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 4677888 99999999985554432111 0111111111110000 1112689999999999
Q ss_pred chHHHHHHHhhhcCEEEEEEeCCCCC-chhHHHHHHHHHhcCC-CEEEEEecCCCCCCC-HHHHHHHHHHhhhhcccccc
Q psy11896 62 DFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNES 138 (1043)
Q Consensus 62 ~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~~~~~~~l~~~~~-piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~ 138 (1043)
+|...+..++..+|++|+|+|++++. ..++.+++..+...+. |+++|+||+|+.+.+ .....+++.+.+. .
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~----~-- 160 (403)
T 3sjy_A 87 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK----G-- 160 (403)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT----T--
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHH----h--
Confidence 99999999999999999999999887 7888888887777665 899999999997532 1222333333221 1
Q ss_pred ccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 139 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 139 l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
......+++++||++|.|+++|++.+...++
T Consensus 161 ----~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 ----TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp ----STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ----hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1123457899999999999999999987654
No 274
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=137.54 Aligned_cols=113 Identities=15% Similarity=0.011 Sum_probs=63.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtPG 276 (1043)
..+|+++|..|+|||||+++|+...-. . ....++.......+.+++ ..+.||||||
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~--~--------------------~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G 91 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP--E--------------------SYTPTVFERYMVNLQVKGKPVHLHIWDTAG 91 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-----------------------------CCCCCEEEEEEEEETTEEEEEEEEEC--
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC--C--------------------CCCCccceeEEEEEEECCEEEEEEEEECCC
Confidence 468999999999999999999732110 0 000111111112233333 4799999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+........ .| ..+.. .++|+++|+||+|+..
T Consensus 92 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 92 QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp -------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred chhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 9999888888899999999999998754433332 22 22222 3789999999999874
No 275
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.41 E-value=7.3e-14 Score=148.06 Aligned_cols=155 Identities=14% Similarity=0.058 Sum_probs=106.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.++.+.....+.+++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 14 ~ki~v~-G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV 92 (223)
T 3cpj_B 14 FKIVLI-GDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV 92 (223)
T ss_dssp EEEEEE-SCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence 678888 9999999999888888887777778777777777777776 5899999999999888888899999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++......... +..+.. .++|+++|+||+|+.... .......+... . ..+++++|
T Consensus 93 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------------~---~~~~~~~S 156 (223)
T 3cpj_B 93 YDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-------------N---QLLFTETS 156 (223)
T ss_dssp EC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-------------T---TCEEEECC
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH-------------c---CCEEEEEe
Confidence 99986544333222 223332 368999999999986421 11111122111 1 13568899
Q ss_pred ecccCCcchHHHHHHhhccc
Q psy11896 155 AHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~~ 174 (1043)
|++|.|++++++.+...+..
T Consensus 157 a~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 157 ALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CC-CCCHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999876543
No 276
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=1.5e-13 Score=142.10 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=105.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+ ++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 19 ~ki~v~-G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 19 LKCVVV-GDGAVGKTCLLMSYANDAFPEEYVP-TVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHSSCCCSCCC-SSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred EEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCC-cccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 577787 9999999999777776655544333 33333344556655 5799999999999888888899999999999
Q ss_pred EeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|+++..+.... .....+... ++|+++|+||+|+..... ..+.+.......+.. ..+. ......+++++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~ 172 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK--TLARLNDMKEKPICVEQGQKLA--KEIGACCYVEC 172 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH--HHHHHTTTTCCCCCHHHHHHHH--HHHTCSCEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccccc--chhhcccccCcccCHHHHHHHH--HHcCCcEEEEe
Confidence 999864333322 223344443 789999999999975311 101100000000000 0000 00112356889
Q ss_pred eecccCCcchHHHHHHhh
Q psy11896 154 SAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~ 171 (1043)
||++|.|++++++.+...
T Consensus 173 Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999988754
No 277
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.41 E-value=2.2e-13 Score=138.59 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=105.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+ ++.......+.+++ ..+.||||||+.++...+..+++.+|++++
T Consensus 9 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 9 THKLVVV-GGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp EEEEEEE-ECTTSSHHHHHHHHHHSSCCSSCCT-TCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCcCccccCC-CcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 3677788 9999999999777666655444433 33333335566665 478999999999988888899999999999
Q ss_pred EEeCCCCCchhHH-HHH----HHHHhcCCCEEEEEecCCCCCCC-H-HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVN----RQMKRYDVPCIAFINKLDRLGAD-P-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~----~~l~~~~~piilvlNKiDl~~~~-~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++....... ..+ ......++|+++|+||+|+.... . ......+... . ..++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------------~---~~~~~~ 150 (181)
T 2fn4_A 87 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-------------H---HVAYFE 150 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-------------T---TCEEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-------------c---CCeEEE
Confidence 9999863322221 111 22223478999999999986421 1 1111222111 1 136788
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 151 ~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 151 ASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999886654
No 278
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.41 E-value=3e-13 Score=151.93 Aligned_cols=115 Identities=19% Similarity=0.231 Sum_probs=81.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDtPG 276 (1043)
.+.+|+++|.+|+|||||+++|+.....+ .....+|.......+.+.+ ..+.|+||||
T Consensus 157 ~la~V~lvG~~nvGKSTLln~L~~~~~~i---------------------~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG 215 (342)
T 1lnz_A 157 VLADVGLVGFPSVGKSTLLSVVSSAKPKI---------------------ADYHFTTLVPNLGMVETDDGRSFVMADLPG 215 (342)
T ss_dssp CCCCEEEESSTTSSHHHHHHHSEEECCEE---------------------SSTTSSCCCCCEEEEECSSSCEEEEEEHHH
T ss_pred hcCeeeeeCCCCCCHHHHHHHHHcCCCcc---------------------ccCCccccCceEEEEEeCCCceEEEecCCC
Confidence 35689999999999999999997442211 1133456666666677765 7899999999
Q ss_pred CCC-------chHHHHHHhHhcCeEEEEEeCCCC---cc-hHHHHHHHHHHh-----cCCCeEEEEeccCCCC
Q psy11896 277 HVD-------FTVEVERALRVLDGAILVLCAVGG---VQ-SQTLTVNRQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~d-------f~~e~~~~l~~~D~~ilVvda~~g---~~-~~t~~~~~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
+.+ +.....+.+..+|++|+|+|+... -. .....++..+.. .++|+++|+||+|+..
T Consensus 216 ~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 216 LIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred CcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 643 445566677789999999999751 12 222333344443 3789999999999863
No 279
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.41 E-value=2.3e-12 Score=133.58 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=75.6
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDt 274 (1043)
....+|+++|.+|+|||||+++|+....... ...+++.......+.+++ ..+.+|||
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt 79 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSA---------------------HEPENPEDTYERRIMVDKEEVTLVVYDI 79 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGG---------------------GTTTSCTTEEEEEEEETTEEEEEEEECC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCcc---------------------CCCCcccceEEEEEEECCEEEEEEEEec
Confidence 3467899999999999999999963322111 011122222222334444 56788999
Q ss_pred CCCCCchH-HHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~-e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~ 333 (1043)
||+.+|.. ....+++.+|++|+|+|+.+.........| ..+.. .++|+++|.||+|+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 80 WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred CCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 99998865 445567899999999999864332222222 22222 4789999999999863
No 280
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.41 E-value=1.8e-13 Score=142.53 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=109.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....|.++.+.. ..+..++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 25 ~~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 25 RKKLVIV-GDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 3677888 99999999998887777777666666665543 3345555 479999999999988888889999999999
Q ss_pred EEeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++....... .....+... ++|+++|+||+|+..... ..+.+.+.....+.. ..+. ......++++
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 178 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH--TRRELAKMKQEPVRSEEGRDMA--NRISAFGYLE 178 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH--HHHHHHTTTCCCCCHHHHHHHH--HHTTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc--chhhhcccccCcCCHHHHHHHH--HhCCCcEEEE
Confidence 9999864332222 233334433 789999999999975321 111111100000000 0000 0112236789
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 179 ~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998764
No 281
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.40 E-value=5.7e-14 Score=168.75 Aligned_cols=170 Identities=23% Similarity=0.219 Sum_probs=116.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhc-CCccccceEEEEec-----------C-------eeEEEEeCCCCcch
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQR-GITIQSAATYTLWK-----------D-------HNINIIDTPGHVDF 63 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~-G~T~~~~~~~~~~~-----------~-------~~i~liDTPG~~~~ 63 (1043)
.++.++ |..++||||...+... ....+.++ |+|.+.....+.+. + ..++|||||||.+|
T Consensus 6 ~~V~Iv-Gh~d~GKTTLl~~L~~-~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVL-GHVDHGKTTLLDHIRG-SAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHH-HHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEE-CCCCCcHHHHHHHHhc-ccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 466667 9999999998544432 23333444 78877666555432 1 15999999999999
Q ss_pred HHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CH--------------HHHHHHHHH
Q psy11896 64 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DP--------------YRVINQMRQ 128 (1043)
Q Consensus 64 ~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~--------------~~~~~~l~~ 128 (1043)
...+.++++.+|++|+|+|+++++..++.+.+..+...++|+++++||+|+... .. ....+.+.+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e 163 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT 163 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHH
Confidence 988888899999999999999999999999999999999999999999999642 10 111111111
Q ss_pred h---hhhccccccccC-----C-CCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 129 K---TSRWISNESLSE-----H-KPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 129 ~---~~~~~~~~~l~~-----~-~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
. +...+...++.. . ......+++++||++|.|+++|++.+..+++.
T Consensus 164 ~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1 000010001110 0 01234588999999999999999999887764
No 282
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.40 E-value=4.3e-13 Score=134.35 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=101.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+ ++.......+..++ .++.+|||||+.++...+..+++.+|++++
T Consensus 4 ~~~i~v~-G~~~~GKssl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 4 LHKVIMV-GSGGVGKSALTLQFMYDEFVEDYEP-TKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCSCCCT-TCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHhCccCCCCCC-CcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 3678888 9999999999776666655433333 33333344455555 479999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCC---HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGAD---PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
|+|+++........ .+..+. ..++|+++|+||+|+.+.. .++. ..+.+.. ..+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~----------------~~~~~ 144 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA-KNRADQW----------------NVNYV 144 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHH-HHHHHHH----------------TCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHH-HHHHHHc----------------CCeEE
Confidence 99998643322221 112222 2378999999999986421 1111 1111111 13578
Q ss_pred eeeecccCCcchHHHHHHhhc
Q psy11896 152 GISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++||++|.|++++++.+...+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 145 ETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHH
Confidence 899999999999999887543
No 283
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.40 E-value=2.4e-13 Score=137.47 Aligned_cols=152 Identities=14% Similarity=-0.004 Sum_probs=94.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhh-hhcCCccccceEEEEecC--eeEEEEeCCCCcc--hHHHHHHHhhhcCE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELE-RQRGITIQSAATYTLWKD--HNINIIDTPGHVD--FTVEVERALRVLDG 76 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e-~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~--~~~~~~~~~~~aD~ 76 (1043)
.+|+.++ |..++||+|...+...+.+... ..+|+|.. ...+.+++ .++.+|||||+.. +......+++.+|+
T Consensus 4 ~~ki~i~-G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 4 LYRVVLL-GDPGVGKTSLASLFAGKQERDLHEQLGEDVY--ERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHCC-----CCCSSSSEE--EEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred EEEEEEE-CCCCccHHHHHHHHhcCCCccccCcccccee--EEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 4688888 9999999999777666555432 33455443 33445555 4789999999987 44555667889999
Q ss_pred EEEEEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCCH--HHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 77 AILVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGADP--YRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+++|+|+++..+.... ..+..+.. .++|+++|+||+|+..... ......+...+ ..+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----------------~~~ 144 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF----------------DCK 144 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH----------------TSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHc----------------CCe
Confidence 9999999864332222 22333433 2789999999999965321 11111111111 135
Q ss_pred eeeeeecccCCcchHHHHHHhhc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++++||++|.|++++++.+...+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 78899999999999999987654
No 284
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.40 E-value=3e-13 Score=146.93 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=114.5
Q ss_pred ccceeeeeecccccccCCccccCCC-hhhhhhcC-CccccceEEEEecCeeEEEEeCCCCcch-----------HHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDS-MELERQRG-ITIQSAATYTLWKDHNINIIDTPGHVDF-----------TVEVER 69 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~-~~~e~~~G-~T~~~~~~~~~~~~~~i~liDTPG~~~~-----------~~~~~~ 69 (1043)
+|+.++ |..++||+|...+.+... +.....++ +|++.....+.+++.+++||||||+.++ ...+..
T Consensus 23 ~~I~lv-G~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 23 LRIILV-GKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 577777 999999999976666554 44445565 8999888889999999999999999764 333445
Q ss_pred HhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc-----CCCEEEEEe-cCCCCCCCHHHHHH--------HHHHhhhhccc
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-----DVPCIAFIN-KLDRLGADPYRVIN--------QMRQKTSRWIS 135 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~-----~~piilvlN-KiDl~~~~~~~~~~--------~l~~~~~~~~~ 135 (1043)
+++.+|++|+|+|++. +...+..++.++... +.|.++++| |+|+........+. .+.+.++
T Consensus 102 ~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~---- 176 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG---- 176 (260)
T ss_dssp HTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT----
T ss_pred cCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC----
Confidence 7788999999999985 677777777777654 678888887 99997544332211 1111111
Q ss_pred cccccCCCCcc-ceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 136 NESLSEHKPIE-YIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 136 ~~~l~~~~~~~-~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.... +.+ +++||++|.|++++++.+...+..
T Consensus 177 -------~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 177 -------GRICAFNN-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp -------TCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CeEEEecC-cccccccHHHHHHHHHHHHHHHHh
Confidence 0011 222 789999999999999999887764
No 285
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.40 E-value=3.7e-13 Score=134.93 Aligned_cols=151 Identities=14% Similarity=-0.009 Sum_probs=86.2
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAI 78 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iI 78 (1043)
.||+.++ |..++||+|...+...... .....+|+|+.. .+..+ ...+.+|||||+.++...+..+++.+|+++
T Consensus 2 ~~ki~~v-G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 77 (166)
T 3q72_A 2 VYKVLLL-GAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYV 77 (166)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC---------------CCEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEE
Confidence 5789899 9999999999766654443 233456666642 23333 447999999999999989999999999999
Q ss_pred EEEeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 79 LVLCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 79 lVvDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+|+|+++..+.... ..+..+.. .++|+++|+||+|+.... .......+.... ..+++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~ 141 (166)
T 3q72_A 78 IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF----------------DCKFI 141 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT----------------TCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHh----------------CCcEE
Confidence 99999864332222 22233332 378999999999996432 111112222211 13678
Q ss_pred eeeecccCCcchHHHHHHhhc
Q psy11896 152 GISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++||++|.|++++++.+...+
T Consensus 142 ~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 142 ETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp ECBGGGTBSHHHHHHHHHHHH
T ss_pred EeccCCCCCHHHHHHHHHHHH
Confidence 899999999999999987654
No 286
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.39 E-value=2.7e-12 Score=130.33 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=71.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
+..+|+++|.+|+|||||+++|+...-.. + ....+.+. ...+.+++ ..+.+||||
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-----------------~---~~t~~~~~---~~~~~~~~~~~~l~i~Dt~ 62 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-----------------L---EKTESEQY---KKEMLVDGQTHLVLIREEA 62 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-----------------C---SSCSSSEE---EEEEEETTEEEEEEEEECS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------c---CCCcceeE---EEEEEECCEEEEEEEEECC
Confidence 34689999999999999999997432110 0 00111111 12233333 578999999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHH---h---cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK---R---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~---~---~~~p~ivviNKiD~~ 332 (1043)
|+.+ ..+++.+|++++|+|+.+.........|. ++. . .++|+++|.||+|+.
T Consensus 63 G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 63 GAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp SSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred CCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9987 35678899999999998755444444331 222 1 378999999999984
No 287
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.39 E-value=5.7e-13 Score=136.19 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=104.7
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.... +.++.+.....+..++ +.+.||||||+.++...+..+++.+|++++
T Consensus 18 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 18 LHKVIMV-GSGGVGKSALTLQFMYDEFVEDY-EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSCCCCSC-CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhhCCCCCcC-CCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 3678888 99999999997776666554333 3344444444455555 479999999999999999999999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
|+|+++........ .+..+. ..++|+++|+||+|+....... .++..+... . .. .+++++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~----~------~~---~~~~~~S 161 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS-VEEAKNRAE----Q------WN---VNYVETS 161 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC-HHHHHHHHH----H------TT---CEEEECC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC-HHHHHHHHH----H------cC---CeEEEeC
Confidence 99998643222221 112222 2378999999999986421100 111111111 0 11 3578999
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 162 a~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 162 AKTRANVDKVFFDLMREI 179 (187)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 288
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.39 E-value=1.9e-13 Score=141.31 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=106.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.+.... ...+..++. .+.+|||||+.++...+..+++.+|++|+|
T Consensus 24 ~ki~~v-G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 101 (194)
T 3reg_A 24 LKIVVV-GDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLC 101 (194)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEE
Confidence 678888 9999999999877777766554444433322 234445544 579999999999998889999999999999
Q ss_pred EeCCCCCchhHH-H-HHHHHHh--cCCCEEEEEecCCCCCCC----HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 81 LCAVGGVQSQTL-T-VNRQMKR--YDVPCIAFINKLDRLGAD----PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 81 vDa~~~~~~~~~-~-~~~~l~~--~~~piilvlNKiDl~~~~----~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|+++..+.... . ....+.. .++|+++|+||+|+.... ..+....+.+.+ ....+++
T Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 166 (194)
T 3reg_A 102 FAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---------------GCVAYIE 166 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH---------------TCSCEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc---------------CCCEEEE
Confidence 999865433331 2 2223333 268999999999986421 111222222221 1223688
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.+...+
T Consensus 167 ~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 167 ASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHHHH
Confidence 99999999999999988654
No 289
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.39 E-value=4.1e-13 Score=137.76 Aligned_cols=148 Identities=11% Similarity=-0.006 Sum_probs=102.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|...+.+.+.+..+..| |.+.....+.+++ ..+.||||||+.++. +++.+|++++
T Consensus 20 ~~ki~iv-G~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 20 ELKVGIV-GNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 4788888 9999999999877777776655444 3333335566666 467889999999876 7888999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh----cCCCEEEEEecCCCCCC----CHHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRLGA----DPYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~----~~~piilvlNKiDl~~~----~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+++..+.+. ...+..+.. .++|+++|+||+|+... ...+....+... ....++
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~---------------~~~~~~ 156 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD---------------LKRCTY 156 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH---------------TTTCEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH---------------cCCCeE
Confidence 999987544333 222333333 36799999999998421 111112222221 112356
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+||++|.|++++++.+...+
T Consensus 157 ~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 157 YETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999987654
No 290
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.39 E-value=1.6e-13 Score=143.29 Aligned_cols=164 Identities=14% Similarity=0.133 Sum_probs=106.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+.. +++.+.....+..++. .+.||||||+.++...+..+++.+|++|+
T Consensus 30 ~~ki~vv-G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 30 AIKCVVV-GDGAVGKTCLLISYTTNAFPGEYI-PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHSCCCC-CC-CCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eEEEEEE-CcCCCCHHHHHHHHHhCCCCCCcC-CeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 3678888 999999999986666555544433 4444544555555554 56699999999998888889999999999
Q ss_pred EEeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccc---cccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNE---SLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~---~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.... .....+... ++|+++|+||+|+..... ..+.+.+.....+... .+. ......++++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 183 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLE 183 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh--hhhhhhccccccccHHHHHHHH--HhcCCcEEEE
Confidence 9999875444333 223334433 789999999999865321 1111111000000000 000 0122345799
Q ss_pred eeecccCCcchHHHHHHhh
Q psy11896 153 ISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+||++|.|++++++.+...
T Consensus 184 ~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHT
T ss_pred eeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998753
No 291
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.38 E-value=2.2e-12 Score=143.55 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=85.0
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe-cCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDtPG~~ 278 (1043)
.+|+++|.+|+|||||+++|+...... .....+.|+......+.+ ++..+++|||||+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~--------------------~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAF--------------------DTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTG--------------------GGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--------------------cccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 679999999999999999987331111 223566777776666665 67899999999998
Q ss_pred Cc-----hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH----HH--hcCCCeEEEEeccCCCC
Q psy11896 279 DF-----TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ----MK--RYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df-----~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~----~~--~~~~p~ivviNKiD~~~ 333 (1043)
+| .......++.+|++|+|+|+.+....+....|.. +. ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 64 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 88 4445667789999999999998765555444322 11 13789999999999874
No 292
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.38 E-value=9.4e-13 Score=137.14 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=105.6
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+... .++++.+.....+.+++ ..+.||||||+.++...+..+++.+|++++|
T Consensus 15 ~ki~v~-G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 92 (206)
T 2bov_A 15 HKVIMV-GSGGVGKSALTLQFMYDEFVED-YEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 92 (206)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSCCCTT-CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEE-CCCCCCHHHHHHHHHhCCCCCC-CCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEE
Confidence 677888 9999999999776666655433 33444444445556665 4799999999999999999999999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCC---HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGAD---PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
+|+++........ .+..+. ..++|+++|+||+|+.... .++. ..+.+.. . .++++
T Consensus 93 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~-------------~---~~~~~ 155 (206)
T 2bov_A 93 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA-KNRAEQW-------------N---VNYVE 155 (206)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHH-HHHHHHH-------------T---CEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHH-HHHHHHh-------------C---CeEEE
Confidence 9998643222221 112222 2378999999999986421 1111 1111111 1 25789
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 156 ~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 156 TSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp ECTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999887654
No 293
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.38 E-value=3.7e-13 Score=138.95 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=105.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....+.++.+.....+..+ +.++.||||||+.++...+..+++.+|++|+|
T Consensus 26 ~ki~v~-G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v 104 (193)
T 2oil_A 26 FKVVLI-GESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLV 104 (193)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 677788 999999999987777666655555544444444444443 45799999999999988899999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++....... ..+..+.. .++|+++|+||+|+.... .......+... . ..+++++|
T Consensus 105 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~~~~S 168 (193)
T 2oil_A 105 FDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN-------------N---GLLFLETS 168 (193)
T ss_dssp EETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-------------T---TCEEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHH-------------c---CCEEEEEe
Confidence 999864332221 22223332 368999999999986421 11111112111 1 13678899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 169 a~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 169 ALDSTNVELAFETVLKEI 186 (193)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 294
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.38 E-value=2.5e-12 Score=135.30 Aligned_cols=114 Identities=20% Similarity=0.190 Sum_probs=75.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 279 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~d 279 (1043)
.+|+++|..|+|||||+++++... ... + ....-|................+.||||+|+.+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~--f~~--------------~---~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~ 74 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDS--FDN--------------T---YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CC---------------------------CEEEEEECSSCEEEEEEECCSCTTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCC--CCC--------------C---cCCccceEEEEEEEEecceEEEEEEEECCCchh
Confidence 579999999999999999997321 100 0 011111111112222222346788999999999
Q ss_pred chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHH---HhcCCCeEEEEeccCCC
Q psy11896 280 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 280 f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~---~~~~~p~ivviNKiD~~ 332 (1043)
|......+++.+|++++|.|...........-| ..+ ...++|+++|.||+|+.
T Consensus 75 ~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 999999999999999999999874443333322 222 23568999999999975
No 295
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=6.9e-13 Score=133.49 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=105.0
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.+..... ..+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 3 ~~~i~v~-G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 3 DYRVAVF-GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4688888 99999999998777776665554444332221 2233333 479999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh-----cCCCEEEEEecCCCCCCC-H-HHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR-----YDVPCIAFINKLDRLGAD-P-YRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~-----~~~piilvlNKiDl~~~~-~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
|+|+++...... ...+..+.. .++|+++|+||+|+.... . ......+.... ..+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~ 144 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW----------------KCAFM 144 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----------------TCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh----------------CCeEE
Confidence 999985432221 223333332 368999999999986421 1 11111221111 13578
Q ss_pred eeeecccCCcchHHHHHHhhcc
Q psy11896 152 GISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
++||++|.|++++++.+.....
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 145 ETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHTCC
T ss_pred EecCCCCcCHHHHHHHHHHHHh
Confidence 8999999999999999986553
No 296
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.38 E-value=5.9e-13 Score=132.89 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=104.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...++..+.+..+..+ ++.+.....+..++ +.+.+|||||+.++...+..+++.+|++++|
T Consensus 4 ~~i~v~-G~~~~GKssl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 4 YKLVVV-GAGGVGKSALTIQLIQNHFVDECDP-TIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSSCCSCCCT-TCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhCcCccccCC-ccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 678888 9999999999777766655443333 33333334445544 4689999999999999999999999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh----cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR----YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~----~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++....... .....+.. .++|+++|+||+|+.... .......+.+.++ .+++++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~S 145 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG----------------IPYIETS 145 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT----------------CCEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC----------------CeEEEec
Confidence 999854332222 12222222 378999999999987532 2222233322211 2578899
Q ss_pred ecccCCcchHHHHHHhhc
Q psy11896 155 AHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l 172 (1043)
|++|.|++++++.+...+
T Consensus 146 a~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 146 AKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 297
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.38 E-value=6.6e-13 Score=136.60 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=95.9
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.... .+++.+.....+..++ ..+.||||||+.++...+..+++.+|++++|
T Consensus 22 ~ki~vv-G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 22 YKLVVV-GAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSSCCSCC-CTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHHcCCCcccc-CCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 678888 99999999997776655544333 3344444444555555 4599999999999999999999999999999
Q ss_pred EeCCCCCchhHHHH-HHHHHh----cCCCEEEEEecCCCCCCC-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLTV-NRQMKR----YDVPCIAFINKLDRLGAD-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~~-~~~l~~----~~~piilvlNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|+++......... ...+.. .++|+++|+||+|+.... ..+....+.+.++ .+++++|
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~S 163 (190)
T 3con_A 100 FAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG----------------IPFIETS 163 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT----------------CCEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC----------------CeEEEEe
Confidence 99986543333222 222222 378999999999986522 1222222222211 2578899
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|++|.|++++++.+...+.
T Consensus 164 a~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 164 AKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999876553
No 298
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=3e-13 Score=141.47 Aligned_cols=164 Identities=12% Similarity=0.070 Sum_probs=103.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+.....|.++.... ..+..++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 26 ~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (207)
T 2fv8_A 26 KKLVVV-GDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (207)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred cEEEEE-CcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence 577777 99999999998777777776665555444332 3345555 4799999999999888888899999999999
Q ss_pred EeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~i 153 (1043)
+|+++....... .....+... ++|+++|+||+|+.... ...+.+.+.....+.. ..+. ......+++++
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~ 179 (207)
T 2fv8_A 104 FSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDGRAMA--VRIQAYDYLEC 179 (207)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHHHHHH--HhcCCCEEEEe
Confidence 999864322222 233334333 78999999999996431 1112221110000000 0000 01122367899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+....
T Consensus 180 SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 299
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.37 E-value=1.3e-12 Score=132.86 Aligned_cols=149 Identities=9% Similarity=-0.021 Sum_probs=99.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|...+...+.+.. ..|.+. +.....+..++ .++.+|||||+.+ ..+++.+|++|+
T Consensus 7 ~~ki~~v-G~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 7 ELRLGVL-GDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp EEEEEEE-CCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 4788888 999999999987777666654 334222 22234455555 4689999999987 357889999999
Q ss_pred EEeCCCCCchhHHHHH-HHHHh------cCCCEEEEEecCCCCCC----CHHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 80 VLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRLGA----DPYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l~~------~~~piilvlNKiDl~~~----~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
|+|+++..+......| .++.. .++|+++|+||+|+... ...+....+...+ ...
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~---------------~~~ 143 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM---------------KRC 143 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH---------------SSE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh---------------cCC
Confidence 9999865443333322 12322 36899999999998421 1111112221111 124
Q ss_pred eeeeeeecccCCcchHHHHHHhhcc
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+++.+||++|.|++++++.+...+-
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHHH
Confidence 6788999999999999999876553
No 300
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.37 E-value=2.2e-13 Score=142.93 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=105.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |+.++||+|.......+.+..+..| ++.+.....+..++ ..+.||||||+.++...+..+++.+|++|+|
T Consensus 10 ~ki~i~-G~~~~GKTsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 10 IKCVTV-GDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCC-SSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred EEEEEE-CCCCCCHHHHHHHHhcCCCCccCCC-ccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence 677888 9999999999877776666544433 33333344455554 4899999999999888888899999999999
Q ss_pred EeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCH----------HHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 81 LCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADP----------YRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 81 vDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~----------~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
+|+++..+.... .....+... ++|+++|+||+|+..... ......+...+ .
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~---------------~ 152 (212)
T 2j0v_A 88 FSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI---------------G 152 (212)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH---------------T
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc---------------C
Confidence 999864333322 222333333 789999999999864311 11111222111 1
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
..+++++||++|.|++++++.+...+.
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 153 AAAYIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEccCCCCCCHHHHHHHHHHHHh
Confidence 235688999999999999999987654
No 301
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.36 E-value=2.3e-13 Score=143.25 Aligned_cols=155 Identities=9% Similarity=-0.036 Sum_probs=108.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|...+...+.+..+..|.+.... ...+..+ ...+.||||||+.++...+..+++.+|++|+
T Consensus 27 ~~ki~vv-G~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 27 RCKLVLV-GDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eEEEEEE-CcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 4788888 9999999999888877777665555554433 2233333 4579999999999998888889999999999
Q ss_pred EEeCCCCCchhH-HH-HHHHHHhc--CCCEEEEEecCCCCCC--------------CHHHHHHHHHHhhhhccccccccC
Q psy11896 80 VLCAVGGVQSQT-LT-VNRQMKRY--DVPCIAFINKLDRLGA--------------DPYRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~-~~~~l~~~--~~piilvlNKiDl~~~--------------~~~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
|+|+++..+... .. ....+... ++|+++|+||+|+... ........+...
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------ 172 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ------------ 172 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH------------
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH------------
Confidence 999987544333 12 22333333 7899999999999642 111111112111
Q ss_pred CCCccceeeeeeeecccCC-cchHHHHHHhhcc
Q psy11896 142 HKPIEYIRNIGISAHIDSG-KTTLTERILFYTG 173 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~G-i~~L~~~l~~~l~ 173 (1043)
....+++.+||++|.| ++++++.+...+-
T Consensus 173 ---~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 173 ---LGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp ---HTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred ---cCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 1122568899999998 9999999987654
No 302
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.36 E-value=7.3e-13 Score=139.42 Aligned_cols=164 Identities=11% Similarity=0.064 Sum_probs=88.2
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|...+...+.+..+..+.+ .+.....+..++. .+.||||||+.++...+..+++.+|++|+|
T Consensus 35 ~ki~vv-G~~~vGKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (214)
T 2j1l_A 35 VKVVLV-GDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC 112 (214)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHC-------CCCC-CEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred EEEEEE-CcCCCCHHHHHHHHHcCCCCCCCCCcc-ceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence 678888 999999999988777776665555433 3333344555544 799999999999998899999999999999
Q ss_pred EeCCCCCchhHHH--HHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccc---cccccCCCCccceeeeee
Q psy11896 81 LCAVGGVQSQTLT--VNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWIS---NESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 81 vDa~~~~~~~~~~--~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~ii~i 153 (1043)
+|+++..+..... ....+.. .++|+++|+||+|+..... ..+.+...-...+. ...+. ......+++++
T Consensus 113 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~ 188 (214)
T 2j1l_A 113 FDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS--LVNKLRRNGLEPVTYHRGQEMA--RSVGAVAYLEC 188 (214)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH--HHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEEC
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch--hhhhhcccccCcccHHHHHHHH--HhcCCCEEEEe
Confidence 9998643333221 2222332 3789999999999965321 11111000000000 00000 01122367899
Q ss_pred eecccCCcchHHHHHHhhc
Q psy11896 154 SAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l 172 (1043)
||++|.|++++++.+....
T Consensus 189 SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 303
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=133.31 Aligned_cols=115 Identities=18% Similarity=0.113 Sum_probs=72.2
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..+|+++|..|+|||||+++|+...-. . ++. ...+.+. .....+......+.+|||||
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~---------------~~~---~t~~~~~-~~~~~~~~~~~~l~i~Dt~G 78 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI-S---------------EYD---PNLEDTY-SSEETVDHQPVHLRVMDTAD 78 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC-S---------------CCC---TTCCEEE-EEEEEETTEEEEEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC-c---------------ccC---CCcccee-eEEEEECCEEEEEEEEECCC
Confidence 44578999999999999999999743210 0 000 0111111 11112223346788999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh------cCCCeEEEEeccCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR------YDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~------~~~p~ivviNKiD~~ 332 (1043)
+.+|.. +...++.+|++++|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 79 ~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 79 LDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp ---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred CCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 988865 46788999999999999864433332222 22222 489999999999975
No 304
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.36 E-value=5.1e-13 Score=138.82 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=102.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+. +.++.+.....+..++. .+.||||||+.++...+..+++.+|++|+
T Consensus 20 ~~ki~~~-G~~~~GKssl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 20 GVKCVLV-GDGAVGKTSLVVSYTTNGYPTEY-IPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCCCC-CCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 4678888 99999999998777776655444 34444444555666664 67799999999888777888999999999
Q ss_pred EEeCCCCCchhHHH--HHHHHHh--cCCCEEEEEecCCCCCCCH--------------HHHHHHHHHhhhhccccccccC
Q psy11896 80 VLCAVGGVQSQTLT--VNRQMKR--YDVPCIAFINKLDRLGADP--------------YRVINQMRQKTSRWISNESLSE 141 (1043)
Q Consensus 80 VvDa~~~~~~~~~~--~~~~l~~--~~~piilvlNKiDl~~~~~--------------~~~~~~l~~~~~~~~~~~~l~~ 141 (1043)
|+|+++........ ....+.. .++|+++|+||+|+..... ......+...
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------ 165 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE------------ 165 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh------------
Confidence 99998644333321 2223333 2789999999999864211 0001111111
Q ss_pred CCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 142 HKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 142 ~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
....+++++||++|.|++++++.+...+
T Consensus 166 ---~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 166 ---IKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp ---HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---cCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 1223678999999999999999987654
No 305
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.36 E-value=4e-13 Score=137.33 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=105.8
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+ ++.+.....+..++ ..+.+|||||+.++...+..+++.+|++++
T Consensus 5 ~~~i~~~-G~~~~GKssl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 5 AIKCVVV-GDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHSSCCSSCCC-CSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHHcCCCCCCcCC-cccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 3677888 9999999999766665555444333 33333334445554 467799999999988888888999999999
Q ss_pred EEeCCCCCchhHHH--HHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT--VNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~--~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+..... ....+... ++|+++|+||+|+.... ...+.+.+.....+.. ..+. ......++++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 158 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLE 158 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEE
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc--hhhhhhcccccccCCHHHHHHHH--HhcCCcEEEE
Confidence 99998644333322 23334333 78999999999986432 1111111100000000 0000 0012236789
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++|.|++++++.+...+.
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHS
T ss_pred ecCCCccCHHHHHHHHHHHHh
Confidence 999999999999999887653
No 306
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.36 E-value=1.2e-13 Score=140.81 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=96.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..|.+. +.....+..+ ...+.+|||||+.++...+..+++.+|++++
T Consensus 8 ~~ki~v~-G~~~~GKssl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 8 FIKCVTV-GDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCeee-eeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4788888 9999999999877776665544444332 2211122223 4567799999999998888889999999999
Q ss_pred EEeCCCCCchhHHH--HHHHHHh--cCCCEEEEEecCCCCCCCHH------------HHHHHHHHhhhhccccccccCCC
Q psy11896 80 VLCAVGGVQSQTLT--VNRQMKR--YDVPCIAFINKLDRLGADPY------------RVINQMRQKTSRWISNESLSEHK 143 (1043)
Q Consensus 80 VvDa~~~~~~~~~~--~~~~l~~--~~~piilvlNKiDl~~~~~~------------~~~~~l~~~~~~~~~~~~l~~~~ 143 (1043)
|+|+++..+..... ....+.. .++|+++|+||+|+...... .....+.+.
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------- 151 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL-------------- 151 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH--------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH--------------
Confidence 99998643333322 2233333 27899999999998643211 011111111
Q ss_pred CccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 144 PIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 144 ~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
....+++++||++|.|++++++.+....
T Consensus 152 -~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 152 -IGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp -HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -cCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1123678899999999999999987643
No 307
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.36 E-value=7.4e-13 Score=139.41 Aligned_cols=117 Identities=12% Similarity=0.007 Sum_probs=78.2
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
....+|+++|..|+|||||+++|+...-.. . +. ...+.+. .....+......+.+|||||
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--------~--------~~---~t~~~~~-~~~~~~~~~~~~l~i~Dt~G 84 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPE--------T--------YV---PTVFENY-TACLETEEQRVELSLWDTSG 84 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCS--------S--------CC---CCSEEEE-EEEEEC--CEEEEEEEEECC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCC--------C--------cC---CeeeeeE-EEEEEECCEEEEEEEEECCC
Confidence 345789999999999999999997432110 0 00 0011111 11122334457899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHH-HHHH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t-~~~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++|+|+|+.+...... ...| ..+... ++|+++|.||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 85 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99998888888899999999999997544443 2333 333333 789999999999864
No 308
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=8.1e-13 Score=136.82 Aligned_cols=152 Identities=17% Similarity=0.091 Sum_probs=103.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+.++... ...+..++ ..+.||||||+.+ ...+..+++.+|++++
T Consensus 28 ~~ki~v~-G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 28 EVKLAIF-GRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 4678888 9999999999877777766555444433222 23344444 5799999999998 7778889999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHH----hcCCCEEEEEecCCCCCC-C-HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMK----RYDVPCIAFINKLDRLGA-D-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~----~~~~piilvlNKiDl~~~-~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++...... ...+..+. ..++|+++|+||+|+... . .......+.+.+ ..++++
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~ 168 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL----------------ACAFYE 168 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----------------TSEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh----------------CCeEEE
Confidence 999986322221 11122222 257899999999998642 1 111112222211 136788
Q ss_pred eeecccC-CcchHHHHHHhhc
Q psy11896 153 ISAHIDS-GKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~-Gi~~L~~~l~~~l 172 (1043)
+||++|. |++++++.+...+
T Consensus 169 ~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 169 CSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp CCTTTCTTCHHHHHHHHHHHH
T ss_pred ECCCcCCcCHHHHHHHHHHHH
Confidence 9999999 9999999987654
No 309
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=1.4e-12 Score=134.92 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=105.4
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec--CeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.+.... ...+..+ ...+.||||||+.++...+..+++.+|++++
T Consensus 8 ~~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 8 DYRVVVF-GAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred eeEEEEE-CCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 4688888 9999999999777766666544444332221 1223333 3479999999999999999999999999999
Q ss_pred EEeCCCCCchhH-HHHHHHHHh-----cCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQT-LTVNRQMKR-----YDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~-~~~~~~l~~-----~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++...... ...+..+.. .++|+++|+||+|+..... ......+...+ . .++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------------~---~~~~~ 149 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW-------------K---CAFME 149 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH-------------T---CEEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh-------------C---CeEEE
Confidence 999985322221 122222322 3689999999999975321 11112222211 1 25688
Q ss_pred eeecccCCcchHHHHHHhhccc
Q psy11896 153 ISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+||++|.|++++++.+......
T Consensus 150 ~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 150 TSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp CBTTTTBSHHHHHHHHHHHCSS
T ss_pred EecCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999876643
No 310
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.35 E-value=8.2e-13 Score=135.33 Aligned_cols=116 Identities=10% Similarity=-0.048 Sum_probs=76.6
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|++|+|||||+++|+...-.. . +. ...+... .....+......+.+|||||+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------~--------~~---~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~ 65 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE--------N--------YV---PTVFENY-TASFEIDTQRIELSLWDTSGS 65 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------S--------CC---CCSEEEE-EEEEECSSCEEEEEEEEECCS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------CC---CccceeE-EEEEEECCEEEEEEEEECCCC
Confidence 45789999999999999999997432100 0 00 0001111 011112223467899999999
Q ss_pred CCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 278 VDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
.+|......+++.+|++++|+|+.+....... ..| ..+.. .+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 99887777788999999999999875443332 223 22322 4789999999999864
No 311
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.34 E-value=9.4e-13 Score=147.84 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=113.0
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC-eeEEEEeCCCCcc-------hHHHHHHHhhhcC
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHVD-------FTVEVERALRVLD 75 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~~i~liDTPG~~~-------~~~~~~~~~~~aD 75 (1043)
++.++ |..++||+|+..+.+.........+.+|.+++...+.+++ ..+.||||||+.+ +...+...++.+|
T Consensus 160 ~V~lv-G~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLV-GFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEE-SSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeee-CCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 45566 9999999999776665555566778999999999998886 7899999999754 5566777788899
Q ss_pred EEEEEEeCCC---CCchhH-HHHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 76 GAILVLCAVG---GVQSQT-LTVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 76 ~iIlVvDa~~---~~~~~~-~~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
++|+|+|+++ .-.... ..+...+.. .++|+++|+||+|+.. ..+..+.+.+.+. .
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~--~~e~~~~l~~~l~-----------~--- 302 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE--AAENLEAFKEKLT-----------D--- 302 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT--HHHHHHHHHHHCC-----------S---
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC--CHHHHHHHHHHhh-----------c---
Confidence 9999999975 222222 233344443 3789999999999974 2223344443321 0
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
..+++++||+++.|+++|++.+...+..
T Consensus 303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 303 DYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 0357889999999999999999887754
No 312
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.34 E-value=1.5e-12 Score=145.73 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=55.0
Q ss_pred cCeeEEEEcCCCCCC-------------chHHHHHHhHhcCeEEEEEeC-CCCcchHH-HHHHHHHHhcCCCeEEEEecc
Q psy11896 265 KDHNINIIDTPGHVD-------------FTVEVERALRVLDGAILVLCA-VGGVQSQT-LTVNRQMKRYDVPCIAFINKL 329 (1043)
Q Consensus 265 ~~~~i~liDtPG~~d-------------f~~e~~~~l~~~D~~ilVvda-~~g~~~~t-~~~~~~~~~~~~p~ivviNKi 329 (1043)
.+..+.||||||+.+ +...+..+++.+|++++|+|+ ..+...+. ..+++.+...+.|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 455677888999999999997 55655444 467777777899999999999
Q ss_pred CCCC
Q psy11896 330 DRLG 333 (1043)
Q Consensus 330 D~~~ 333 (1043)
|+..
T Consensus 209 Dl~~ 212 (315)
T 1jwy_B 209 DLMD 212 (315)
T ss_dssp TSSC
T ss_pred ccCC
Confidence 9874
No 313
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.34 E-value=1.3e-12 Score=145.50 Aligned_cols=163 Identities=13% Similarity=0.105 Sum_probs=111.8
Q ss_pred CccceeeeeecccccccCCccccCCChh-hhhhcCCccccceEEEEe-cCeeEEEEeCCCCcch-----HHHHHHHhhhc
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSME-LERQRGITIQSAATYTLW-KDHNINIIDTPGHVDF-----TVEVERALRVL 74 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~-~e~~~G~T~~~~~~~~~~-~~~~i~liDTPG~~~~-----~~~~~~~~~~a 74 (1043)
.+|+.++ |+.++||+|.......+..+ ....+|+|++.....+.+ ++.++.+|||||+.++ ...+..+++.+
T Consensus 3 ~~KI~lv-G~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 3 GSKLLLM-GRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 3688888 99999999997776666433 446899999999988876 5779999999999988 45677788999
Q ss_pred CEEEEEEeCCCCCchhHHHHH-HHHHh-----cCCCEEEEEecCCCCCCCHHH-HHHHHHHhhhhccccccccCCCCccc
Q psy11896 75 DGAILVLCAVGGVQSQTLTVN-RQMKR-----YDVPCIAFINKLDRLGADPYR-VINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~-~~l~~-----~~~piilvlNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
|++|+|+|+++..+......| .++.. .++|+++|+||+|+...+... ..+...+....+... .....
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~------~g~~~ 155 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE------FGFPN 155 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT------TTCCS
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH------cCCCC
Confidence 999999999976555544332 22322 278999999999997522211 110111111111111 11113
Q ss_pred eeeeeeeecccCCcchHHHHHHhhc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+++++||++ .|+.+++..+...+
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHH
Confidence 5778999999 78888777766543
No 314
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.33 E-value=8.2e-12 Score=141.64 Aligned_cols=115 Identities=20% Similarity=0.210 Sum_probs=76.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.++.|+++|++|+|||||+++|+.... ..+...+.|.+.....+.+++..+.++||||+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~---------------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~ 236 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ---------------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGF 236 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--------------------------------CCSCEEEEEETTEEEEEEECCCB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc---------------------cccCCcccccCCEEEEEEECCEEEEEEeCCCc
Confidence 466799999999999999999974321 12234566776667778888899999999997
Q ss_pred CCc--------hHHHHHHhHhcCeEEEEEeCCCCc--ch-HHHHHHHHHHh---cCCCeEEEEeccCCCC
Q psy11896 278 VDF--------TVEVERALRVLDGAILVLCAVGGV--QS-QTLTVNRQMKR---YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 278 ~df--------~~e~~~~l~~~D~~ilVvda~~g~--~~-~t~~~~~~~~~---~~~p~ivviNKiD~~~ 333 (1043)
.+. ...+...+..+|.+++|+|+.+.. .. +...+...+.. .+.|+++|.||+|+..
T Consensus 237 i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 237 IRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp CSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred hhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 432 122344568899999999998764 12 22122222322 5789999999999864
No 315
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.32 E-value=8.7e-13 Score=157.25 Aligned_cols=157 Identities=11% Similarity=-0.004 Sum_probs=113.8
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEe
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvD 82 (1043)
+|+.++ |..++||+|...+...+.+. + ...|++.....+.++++.+.||||||+.++...+..+++.+|++|+|+|
T Consensus 323 ~ki~lv-G~~nvGKSsLl~~l~~~~~~-~--~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 323 MRILML-GLDAAGKTTILYKLKLGQSV-T--TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHSSCC-C--CCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred eeEEEE-cCCCCCHHHHHHHHhcCCCC-C--cCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 678888 99999999997776655532 2 2348888888888899999999999999999889999999999999999
Q ss_pred CCCCCchhHHH-HHHHH-Hh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc
Q psy11896 83 AVGGVQSQTLT-VNRQM-KR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI 157 (1043)
Q Consensus 83 a~~~~~~~~~~-~~~~l-~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~ 157 (1043)
+++........ .+..+ .. .++|+|+|+||+|+...... +++.+.++ ... ......+++++||++
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---~~~~~~~~-------~~~-~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKLG-------LTR-IRDRNWYVQPSCATS 467 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCH---HHHHHHTT-------CTT-CCSSCEEEEECBTTT
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCH---HHHHHHhc-------hhh-hhcCCeEEEEEECCC
Confidence 98754333322 22222 21 47899999999999754322 22333222 100 111234689999999
Q ss_pred cCCcchHHHHHHhhccc
Q psy11896 158 DSGKTTLTERILFYTGR 174 (1043)
Q Consensus 158 g~Gi~~L~~~l~~~l~~ 174 (1043)
|.|++++++.+...+..
T Consensus 468 g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp TBTHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999876653
No 316
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.32 E-value=4.2e-13 Score=139.65 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=105.3
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEE--ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTL--WKDHNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~--~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+.....+.++... ...+. .....+.||||||+.++...+..+++.+|++|+
T Consensus 24 ~~ki~vv-G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 24 YRKVVIL-GYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred cEEEEEE-CCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 3678888 9999999999877777766655444433322 33333 345679999999999988888889999999999
Q ss_pred EEeCCCCCchhHHH-HHHHHH----hcCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~----~~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++........ .+..+. ..++|+++|+||+|+.... .......+...+ ..++++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~ 165 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW----------------GATFME 165 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH----------------TCEEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh----------------CCeEEE
Confidence 99998643322222 222222 2378999999999986421 111122222221 126788
Q ss_pred eeecccCCcchHHHHHHhhccc
Q psy11896 153 ISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+||++|.|++++++.+...+..
T Consensus 166 ~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 166 SSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999876643
No 317
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.32 E-value=4.8e-13 Score=156.24 Aligned_cols=150 Identities=17% Similarity=0.131 Sum_probs=106.4
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHHH--------HHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE--------VERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~--------~~~~~~~ 73 (1043)
+|+.++ |..++||+|...+...+.. .....+|+|++.....+.+++..+.||||||+.++... +..+++.
T Consensus 225 ~kV~iv-G~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 225 LKVAIV-GRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANT 303 (462)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCS
T ss_pred CEEEEE-cCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhc
Confidence 577777 9999999998766555432 24567899999998888999999999999999765433 2335788
Q ss_pred cCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeee
Q psy11896 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGI 153 (1043)
Q Consensus 74 aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~i 153 (1043)
+|++++|+|++++.......++..+. .+|+++|+||+|+....... .+ .. . ....+++++
T Consensus 304 aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~-------~~---------~~-~-~~~~~~i~i 363 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT-------SL---------EY-P-ENITQIVHT 363 (462)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST-------TC---------CC-C-TTCCCEEEE
T ss_pred CCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH-------HH---------HH-h-ccCCcEEEE
Confidence 99999999999888887777766664 37999999999997532110 00 00 0 123467899
Q ss_pred eecccCCcchHHHHHHhhcc
Q psy11896 154 SAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 154 Sa~~g~Gi~~L~~~l~~~l~ 173 (1043)
||++|.|+++|++.+...+.
T Consensus 364 SAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 364 AAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp BTTTTBSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999987654
No 318
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.99 E-value=1.5e-13 Score=143.31 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=104.2
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..+ ++.+.....+..++ ..+.+|||||+.++...+..+++.+|++|+
T Consensus 30 ~~ki~v~-G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 30 AIKCVVV-GDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 3678888 9999999999877776665544333 34343333444443 467799999999999999999999999999
Q ss_pred EEeCCCCCchhHH--HHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcc---ccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWI---SNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~--~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.... .....+... ++|+++|+||+|+..... ..+.+.+...... ....+. ......++++
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 183 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLE 183 (204)
Confidence 9999865443332 222333333 789999999999964321 0011100000000 000011 1112236788
Q ss_pred eeecccCCcchHHHHHHh
Q psy11896 153 ISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~ 170 (1043)
+||++|.|++++++.+..
T Consensus 184 vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIR 201 (204)
Confidence 999999999999988764
No 319
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.99 E-value=1.7e-13 Score=143.02 Aligned_cols=114 Identities=15% Similarity=0.040 Sum_probs=77.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee--eEEEEecCeeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA--ATYTLWKDHNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~--~~~~~~~~~~i~liDtP 275 (1043)
+..+|+++|.+|+|||||+++|+...-... ...++.... ..........+.+||||
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~ 86 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE----------------------YIPTVFDNYSANVMVDGKPVNLGLWDTA 86 (204)
Confidence 456899999999999999999973211000 000111111 11122334567799999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
|+.+|......+++.+|++++|+|+.+........ .| ..+... ++|+++|+||+|+..
T Consensus 87 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 99999988888899999999999998765444332 23 333333 789999999999864
No 320
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.30 E-value=9.7e-12 Score=141.45 Aligned_cols=114 Identities=22% Similarity=0.222 Sum_probs=76.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
...+|+++|++|+|||||+++|+.... . .+...+.|.......+.+++..+.+|||||+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~---~------------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~ 224 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP---E------------------IASYPFTTRGINVGQFEDGYFRYQIIDTPGL 224 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC---E------------------EECCTTCSSCEEEEEEEETTEEEEEEECTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---c------------------cCCCCCeeeceeEEEEEecCceEEEEeCCCc
Confidence 456899999999999999999974321 0 0112344444555566677889999999998
Q ss_pred CCchH--------HHHHHh-HhcCeEEEEEeCCCCc--chHH-HHHHHHHHh-c-CCCeEEEEeccCCC
Q psy11896 278 VDFTV--------EVERAL-RVLDGAILVLCAVGGV--QSQT-LTVNRQMKR-Y-DVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df~~--------e~~~~l-~~~D~~ilVvda~~g~--~~~t-~~~~~~~~~-~-~~p~ivviNKiD~~ 332 (1043)
.++.. ....++ ..+|++++|+|+..+. .... ...+..+.. . +.|+++|+||+|+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 76431 222233 4689999999987643 3332 223333322 2 89999999999986
No 321
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.30 E-value=1.7e-12 Score=162.84 Aligned_cols=112 Identities=38% Similarity=0.505 Sum_probs=89.3
Q ss_pred ccceeeeeecccccccCCc----------------cccCCChhhhhhcCCccccceEEEEec----------------Ce
Q psy11896 3 HKVKIIHIKQEQVRGKDNV----------------GAVMDSMELERQRGITIQSAATYTLWK----------------DH 50 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~----------------~~~~d~~~~e~~~G~T~~~~~~~~~~~----------------~~ 50 (1043)
+|+.|+ |..++||||... ++.+|+.++|+++|+|+......+.|. ++
T Consensus 20 rnI~Ii-G~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 20 RNMSVI-AHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEE-CCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 466777 999999999721 266788899999999999888777775 67
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCC
Q psy11896 51 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 115 (1043)
Q Consensus 51 ~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~ 115 (1043)
.++|||||||.+|...+..+++.+|++|+|+|++++.+.++..+|.++...++|+++|+||+|+.
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 89999999999999999999999999999999999999999999988888899999999999986
No 322
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.30 E-value=1.9e-12 Score=135.36 Aligned_cols=115 Identities=10% Similarity=-0.037 Sum_probs=76.7
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEe--cCeeEEEEcC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLW--KDHNINIIDT 274 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~liDt 274 (1043)
....+|+++|..|+|||||+++|+...-.. . + ...+... ....+.+ ....+.||||
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------~--------~-----~~t~~~~-~~~~~~~~~~~~~l~i~Dt 83 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE--------N--------Y-----VPTVFEN-YTASFEIDTQRIELSLWDT 83 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------S--------C-----CCCSEEE-EEEEEESSSSEEEEEEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC--------C--------c-----CCcccee-EEEEEEECCEEEEEEEEeC
Confidence 345789999999999999999997432110 0 0 0000000 0112233 3468999999
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHH-HHH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~-~~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
||+.+|......+++.+|++|+|+|+......... ..| ..+.. .+.|+++|.||+|+..
T Consensus 84 ~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 84 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 99999887777778999999999999875433332 223 23332 4789999999999863
No 323
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=132.37 Aligned_cols=152 Identities=11% Similarity=0.010 Sum_probs=98.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |+.++||+|...+...+.+..+..+.+. +.....+..++ ..+.||||||+.++.. +..+++.+|++++
T Consensus 21 ~~ki~vv-G~~~vGKTsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~il 97 (187)
T 3c5c_A 21 EVNLAIL-GRRGAGKSALTVKFLTKRFISEYDPNLE-DTYSSEETVDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLV 97 (187)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCC---CCC-THHHHTTCSEEEE
T ss_pred eEEEEEE-CCCCCcHHHHHHHHHhCCCCcccCCCcc-ceeeEEEEECCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEE
Confidence 3688888 9999999999877776665544444332 22223344443 5789999999987665 3578899999999
Q ss_pred EEeCCCCCchhHHH-HHHHHHh------cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 80 VLCAVGGVQSQTLT-VNRQMKR------YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 80 VvDa~~~~~~~~~~-~~~~l~~------~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+++..+..... .+..+.. .++|+++|+||+|+.... ..+....+.+.+ . .++
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-------------~---~~~ 161 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-------------G---CLF 161 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-------------T---CEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-------------C---CcE
Confidence 99998643332222 2222222 478999999999985421 111112222221 1 256
Q ss_pred eeeee-cccCCcchHHHHHHhhc
Q psy11896 151 IGISA-HIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa-~~g~Gi~~L~~~l~~~l 172 (1043)
+.+|| ++|.|++++++.+...+
T Consensus 162 ~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 162 FEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp EECCSSSCSHHHHHHHHHHHHHH
T ss_pred EEEeecCccccHHHHHHHHHHHH
Confidence 88999 89999999999987643
No 324
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.29 E-value=9.6e-13 Score=134.79 Aligned_cols=164 Identities=9% Similarity=-0.022 Sum_probs=103.6
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..|.+.... ...+..++ ..+.||||||+.++...+..+++.+|++|+
T Consensus 7 ~~ki~v~-G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 7 KCKIVVV-GDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred EEEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 4678888 9999999999877777766655555443322 23344443 579999999999988888888999999999
Q ss_pred EEeCCCCCchhHH-HHH-HHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~~~-~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.... ..| ..+.. .++|+++|+||+|+.... . ....+.......+.. ..+. ......+++.
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e 160 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV-S-TLVELSNHRQTPVSYDQGANMA--KQIGAATYIE 160 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-H-HHHHHHTTTCCCCCHHHHHHHH--HHHTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcch-h-hHhhhhhcccCCCCHHHHHHHH--HHcCCcEEEE
Confidence 9999864333332 222 23333 378999999999996421 0 011110000000000 0000 0011236788
Q ss_pred eeec-ccCCcchHHHHHHhh
Q psy11896 153 ISAH-IDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~-~g~Gi~~L~~~l~~~ 171 (1043)
+||+ +|.|++++++.+...
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHH
T ss_pred eeecCCCcCHHHHHHHHHHH
Confidence 9999 699999999988754
No 325
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.29 E-value=4.5e-12 Score=140.52 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=83.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCcee-------eeee---cC-----------Cccccccccchh----hh----
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISE-------MHEV---RG-----------KDNVGAVMDSME----LE---- 248 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~-------~~~v---~~-----------~~~~~~~~d~~~----~e---- 248 (1043)
...+|+++|.+|+|||||+++|+........ .+.+ .. |.. +++... .+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~---~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKK---FTDFEEVRLEIEAETD 101 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCC---BCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcc---cCCHHHHHHHHHHHHH
Confidence 3468999999999999999999865432100 0000 00 000 011110 00
Q ss_pred h----hcCceEeeeeEEEEec-CeeEEEEcCCCCCC-------------chHHHHHHhHhcCeEE-EEEeCCCCcchHHH
Q psy11896 249 R----QRGITIQSAATYTLWK-DHNINIIDTPGHVD-------------FTVEVERALRVLDGAI-LVLCAVGGVQSQTL 309 (1043)
Q Consensus 249 ~----~~giTi~~~~~~~~~~-~~~i~liDtPG~~d-------------f~~e~~~~l~~~D~~i-lVvda~~g~~~~t~ 309 (1043)
. ..|++.......+... ...+.||||||+.+ +...+..+++.+|.++ +|+|+..+...+..
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 1 1333333333333333 47899999999742 3445667788888777 69999988877764
Q ss_pred -HHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 310 -TVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 310 -~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.+++.+...+.|+++|+||+|+..
T Consensus 182 ~~~~~~~~~~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 182 LKIAKEVDPQGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHHHCTTCSSEEEEEECGGGSC
T ss_pred HHHHHHhCCCCCeEEEEEEccccCC
Confidence 466777677899999999999864
No 326
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.28 E-value=1e-12 Score=137.30 Aligned_cols=164 Identities=9% Similarity=-0.015 Sum_probs=104.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC--eeEEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|...+...+.+..+..|.+.... ...+..++ .++.||||||+.++...+..+++.+|++|+
T Consensus 28 ~~ki~vv-G~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 28 KCKIVVV-GDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp EEEEEEE-ESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeEEEEE-CCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 3688888 9999999999887777777655555443332 23344443 579999999999988888888999999999
Q ss_pred EEeCCCCCchhHH-H-HHHHHHh--cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTL-T-VNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~-~-~~~~l~~--~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+.... . ....+.. .++|+++|+||+|+.... . ....+.......+.. ..+. ......+++.
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e 181 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV-S-TLVELSNHRQTPVSYDQGANMA--KQIGAATYIE 181 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-H-HHHHHHTTTCCCCCHHHHHHHH--HHHTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccch-h-hhhhhcccccCCCCHHHHHHHH--HHcCCCEEEE
Confidence 9999864333322 1 2233333 378999999999996421 0 001110000000000 0000 0011236788
Q ss_pred eeec-ccCCcchHHHHHHhh
Q psy11896 153 ISAH-IDSGKTTLTERILFY 171 (1043)
Q Consensus 153 iSa~-~g~Gi~~L~~~l~~~ 171 (1043)
+||+ +|.|++++++.+...
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHH
Confidence 9999 689999999988754
No 327
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.27 E-value=6.5e-12 Score=141.27 Aligned_cols=113 Identities=14% Similarity=0.072 Sum_probs=78.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe--eEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDtPG 276 (1043)
..+|+++|.+|+|||||+++++...-.. ...+++.......+..++. .+.+|||||
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G 212 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPG----------------------EYIPTVFDNYSANVMVDGKPVNLGLWDTAG 212 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC----------------------SCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCc----------------------ccCCcccceeEEEEEECCEEEEEEEEeCCC
Confidence 4689999999999999999997321100 0111222222223344444 566999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHH-HH-HHHHhc--CCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VN-RQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~-~~-~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|+.+........ .| ..+... ++|+++|+||+|+..
T Consensus 213 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp CGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred chhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 9999887778889999999999999865444432 22 333333 889999999999864
No 328
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.27 E-value=1.3e-11 Score=134.22 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=80.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+...... .....++|.......+.+++..++||||||+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~ 95 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVR--------------------VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSC--------------------CCSSCC-CCCCEEEEEEETTEEEEEEECCCSE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcc--------------------cCCCCCcceeeEEEEEEECCeeEEEEECCCCC
Confidence 4789999999999999999998532211 12245567777777788999999999999998
Q ss_pred CchHHH---HHHhH------hcCeEEEEEeCCC-CcchHHHHHHHHHHhc-C----CCeEEEEeccCCC
Q psy11896 279 DFTVEV---ERALR------VLDGAILVLCAVG-GVQSQTLTVNRQMKRY-D----VPCIAFINKLDRL 332 (1043)
Q Consensus 279 df~~e~---~~~l~------~~D~~ilVvda~~-g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~ 332 (1043)
+|.... .+.+. .+|++++|+|... .........++.+... + .|+++|+||+|+.
T Consensus 96 ~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 96 EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp ETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 875432 22222 7899999987764 3444444555544432 2 4899999999985
No 329
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.26 E-value=4.2e-12 Score=136.73 Aligned_cols=159 Identities=12% Similarity=0.088 Sum_probs=106.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhh--hcCCccccceEEEEecCeeEEEEeCCCC--------cchHHHHHHHh-
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELER--QRGITIQSAATYTLWKDHNINIIDTPGH--------VDFTVEVERAL- 71 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~--~~G~T~~~~~~~~~~~~~~i~liDTPG~--------~~~~~~~~~~~- 71 (1043)
+|+.++ |..++||+|...+.+........ ..|+|+......+.+++.+++||||||+ .++...+..++
T Consensus 22 l~I~lv-G~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~ 100 (247)
T 3lxw_A 22 RRLILV-GRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYL 100 (247)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHH
T ss_pred eEEEEE-CCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHH
Confidence 577778 99999999887655554443322 3368999999999999999999999998 44555565555
Q ss_pred ---hhcCEEEEEEeCCCCCchhHHHHHHHHHhc------CCCEEEEEecCCCCCCCHHHHHHH-----HHHhhhhccccc
Q psy11896 72 ---RVLDGAILVLCAVGGVQSQTLTVNRQMKRY------DVPCIAFINKLDRLGADPYRVINQ-----MRQKTSRWISNE 137 (1043)
Q Consensus 72 ---~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~------~~piilvlNKiDl~~~~~~~~~~~-----l~~~~~~~~~~~ 137 (1043)
+.+|++|+|+|++. +...+..++.++... +.|++++.||+|+.+.+..+.+.. ++..+ ...
T Consensus 101 ~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~----~~~ 175 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV----AEC 175 (247)
T ss_dssp HHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH----HHT
T ss_pred hcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH----HHc
Confidence 89999999999984 666777767766553 689999999999976554433311 22211 110
Q ss_pred cccCCCCccceeeee---eeecccCCcchHHHHHHhhccc
Q psy11896 138 SLSEHKPIEYIRNIG---ISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 138 ~l~~~~~~~~~~ii~---iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+ ..+ .++. .|+.++.|+++|++.+..++.+
T Consensus 176 g------~~~-~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 176 G------GRV-CAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp T------TCE-EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C------CeE-EEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 0 000 1111 2344579999999999887764
No 330
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.25 E-value=5.5e-12 Score=139.73 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=80.6
Q ss_pred chHHHHHHHhhhcCEEEEEEeCCCCC-chhH-HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccc
Q psy11896 62 DFTVEVERALRVLDGAILVLCAVGGV-QSQT-LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESL 139 (1043)
Q Consensus 62 ~~~~~~~~~~~~aD~iIlVvDa~~~~-~~~~-~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l 139 (1043)
++......+++++|++++|+|++++. +... ...+..+...++|+++|+||+|+.+.......+.+.+.+. .
T Consensus 68 r~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~----~--- 140 (302)
T 2yv5_A 68 RKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYR----D--- 140 (302)
T ss_dssp CSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHH----H---
T ss_pred hHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHH----H---
Confidence 33333445799999999999998653 4332 2233445567899999999999974211011222222211 0
Q ss_pred cCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHH
Q psy11896 140 SEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERI 219 (1043)
Q Consensus 140 ~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~L 219 (1043)
.. .+++++||++|.|+++|++.+.. ..++++|+.|+|||||++.|
T Consensus 141 -----~g-~~~~~~SA~~g~gi~~L~~~l~G-----------------------------~i~~l~G~sG~GKSTLln~l 185 (302)
T 2yv5_A 141 -----AG-YDVLKVSAKTGEGIDELVDYLEG-----------------------------FICILAGPSGVGKSSILSRL 185 (302)
T ss_dssp -----TT-CEEEECCTTTCTTHHHHHHHTTT-----------------------------CEEEEECSTTSSHHHHHHHH
T ss_pred -----CC-CeEEEEECCCCCCHHHHHhhccC-----------------------------cEEEEECCCCCCHHHHHHHH
Confidence 11 26789999999999999876531 34899999999999999999
Q ss_pred h
Q psy11896 220 L 220 (1043)
Q Consensus 220 l 220 (1043)
+
T Consensus 186 ~ 186 (302)
T 2yv5_A 186 T 186 (302)
T ss_dssp H
T ss_pred H
Confidence 7
No 331
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=1e-11 Score=130.21 Aligned_cols=154 Identities=14% Similarity=0.014 Sum_probs=98.4
Q ss_pred CccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCe--eEEEEeCCCCcc-hHHHHHHHhhhcCEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDH--NINIIDTPGHVD-FTVEVERALRVLDGA 77 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~-~~~~~~~~~~~aD~i 77 (1043)
.+|+.++ |+.++||+|...+++.... ..+..+.++.+.....+.+++. ++.+|||+|+.. +......+++.+|++
T Consensus 37 ~~kVvlv-G~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ 115 (211)
T 2g3y_A 37 YYRVVLI-GEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 115 (211)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence 3788888 9999999998766653222 1122344555555555666665 578999999987 333344456789999
Q ss_pred EEEEeCCCCCchhHHH-HHHHHHh----cCCCEEEEEecCCCCCC-CH-HHHHHHHHHhhhhccccccccCCCCccceee
Q psy11896 78 ILVLCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRLGA-DP-YRVINQMRQKTSRWISNESLSEHKPIEYIRN 150 (1043)
Q Consensus 78 IlVvDa~~~~~~~~~~-~~~~l~~----~~~piilvlNKiDl~~~-~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~i 150 (1043)
|+|+|.++..+..... .+..+.. .++|+++|+||+|+... .. ......+...+ ..++
T Consensus 116 ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~----------------~~~~ 179 (211)
T 2g3y_A 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF----------------DCKF 179 (211)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH----------------TCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc----------------CCEE
Confidence 9999998643322222 2223332 37899999999998632 11 11111111111 1256
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+||++|.|++++++.+...+
T Consensus 180 ~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 180 IETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998654
No 332
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=3.1e-11 Score=126.52 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=70.3
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|.+|+|||||+++++.....+.. ++ ...|.+... ..+.+++ ..+.+|||+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~--------------~~----~~~g~d~~~--~~i~~~~~~~~l~~~Dt~ 95 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS--------------DC----EVLGEDTYE--RTLMVDGESATIILLDMW 95 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCC--------------C-------CCTTEEE--EEEEETTEEEEEEEECCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCC--------------cC----CccceeeEE--EEEEECCeeeEEEEeecC
Confidence 4578999999999999999999743222111 00 011222111 2234444 456789999
Q ss_pred CCCCc-hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh----cCCCeEEEEeccCCC
Q psy11896 276 GHVDF-TVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df-~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~ 332 (1043)
|.... ........+.+|++|+|+|..+.-.-.....| ..+.. .++|+++|.||+|+.
T Consensus 96 g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 96 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp TTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred CCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 98763 22222234778999999999863322222222 22322 378999999999985
No 333
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.24 E-value=1.1e-11 Score=135.60 Aligned_cols=156 Identities=14% Similarity=0.189 Sum_probs=90.7
Q ss_pred ccceeeeeecccccccCCcc-ccCCChhhhh-------hcCCccccceEEEEecCe--eEEEEeCCCCcc-------hHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVG-AVMDSMELER-------QRGITIQSAATYTLWKDH--NINIIDTPGHVD-------FTV 65 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~-~~~d~~~~e~-------~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~-------~~~ 65 (1043)
||+.++ |..++||+|+..+ +..+.+..+. .++++++.....+..++. +++||||||+.+ +..
T Consensus 9 ~~I~vv-G~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 9 FTLMVV-GESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEE-CCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 677788 9999999999766 3444444443 555666665555555553 899999999942 222
Q ss_pred HH-------HHHhhh-------------cCEEEEEEeCC-CCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHH
Q psy11896 66 EV-------ERALRV-------------LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVI 123 (1043)
Q Consensus 66 ~~-------~~~~~~-------------aD~iIlVvDa~-~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~ 123 (1043)
.+ ..+++. +|++++++|.+ .++...+..+++.+.. ++|+|+|+||+|+.... .....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~ 166 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 166 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHH
Confidence 22 445554 77899988765 4778888888888877 89999999999986422 22222
Q ss_pred HHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 124 NQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 124 ~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+.+.+.+. . ...+++++||.++.|++++++.+...++
T Consensus 167 ~~i~~~l~----~---------~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 167 KQIMKEIQ----E---------HKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHH----H---------TTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHH----H---------cCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 33333221 1 1134677999999999999999886654
No 334
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.24 E-value=1.3e-11 Score=135.88 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=102.2
Q ss_pred cceeeeeecccccccCCccccCCChhhh-hhcCCccccceEEEEecCeeEEEEeCCCCcchHH---HHHHHhhhcCEEEE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELE-RQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV---EVERALRVLDGAIL 79 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e-~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~---~~~~~~~~aD~iIl 79 (1043)
|++++ |++++||||.......+..+.+ ...+.|+......+. ...++.||||||+++|.. .+..++++++++|+
T Consensus 1 KIvll-GdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il 78 (331)
T 3r7w_B 1 MVLLM-GVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVY 78 (331)
T ss_dssp CEEEE-CSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred CEEEE-CCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence 67777 9999999999754333333322 234667776666552 347899999999999864 46789999999999
Q ss_pred EEeCCCCCchhHHHHH-HHH---H--hcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLTVN-RQM---K--RYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~~~-~~l---~--~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++. .......| .++ . ..++|+++++||+|+...+. ......+....+..+...++ ... ....+.
T Consensus 79 V~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~-~~~---~i~f~e 153 (331)
T 3r7w_B 79 VIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL-DGV---QVSFYL 153 (331)
T ss_dssp ECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC-SCC---CEEEEC
T ss_pred EEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc-ccc---CceEEE
Confidence 9999976 32322222 222 2 24789999999999975321 11112222222111111000 001 235577
Q ss_pred eeecccCCcchHHHHHHhhcc
Q psy11896 153 ISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+||++ .++.+.+..++..+-
T Consensus 154 TSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSS
T ss_pred eccCC-CcHHHHHHHHHHHHH
Confidence 99997 589999888875543
No 335
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.24 E-value=4.2e-12 Score=130.09 Aligned_cols=163 Identities=12% Similarity=0.025 Sum_probs=98.3
Q ss_pred CccceeeeeecccccccCCccccCC--ChhhhhhcCCccccceEEEEe-----cCeeEEEEeCCCCcchHHHHHHHhhhc
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMD--SMELERQRGITIQSAATYTLW-----KDHNINIIDTPGHVDFTVEVERALRVL 74 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d--~~~~e~~~G~T~~~~~~~~~~-----~~~~i~liDTPG~~~~~~~~~~~~~~a 74 (1043)
.+|+.++ |++++||+|........ .+..+..+.++++.....+.. ....+.+|||||+.++...+..+++.+
T Consensus 2 ~~kv~iv-G~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (184)
T 2zej_A 2 RMKLMIV-GNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR 80 (184)
T ss_dssp -CEEEEE-SCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC
Confidence 5789999 99999999997666653 333334454444443333322 356899999999998887778889999
Q ss_pred CEEEEEEeCCCCCc-hhHH-HHHHHHHh--cCCCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCCcc-ce
Q psy11896 75 DGAILVLCAVGGVQ-SQTL-TVNRQMKR--YDVPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKPIE-YI 148 (1043)
Q Consensus 75 D~iIlVvDa~~~~~-~~~~-~~~~~l~~--~~~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~-~~ 148 (1043)
|++++|+|.+++.. .... ..+..+.. .+.|+++|+||+|+...... .......+.+ ....... ..
T Consensus 81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 151 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKEL---------LNKRGFPAIR 151 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHT---------TTCTTSCEEE
T ss_pred cEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHH---------HHhcCCcchh
Confidence 99999999886421 1111 11122222 37899999999999642111 0111111221 1111111 12
Q ss_pred eeeeeeecccC-CcchHHHHHHhhccc
Q psy11896 149 RNIGISAHIDS-GKTTLTERILFYTGR 174 (1043)
Q Consensus 149 ~ii~iSa~~g~-Gi~~L~~~l~~~l~~ 174 (1043)
+++.+||++|. |+++|++.+...+..
T Consensus 152 ~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 152 DYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred heEEEecccCchhHHHHHHHHHHHHhc
Confidence 46889999996 999999998876543
No 336
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.22 E-value=7.4e-11 Score=128.76 Aligned_cols=115 Identities=14% Similarity=0.060 Sum_probs=80.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
..+|+++|++|+|||||+++|+...... .....++|.......+.+++..+++|||||+.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~ 98 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVS--------------------ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSC--------------------CCSSSCCCSSCEEEEEEETTEEEEEEECCCSE
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccc--------------------ccCCCCcceeeEEEEEeeCCeEEEEEECCCCC
Confidence 4689999999999999999998432111 11134455555566677889999999999997
Q ss_pred Cch---HHHHHHh------HhcCeEEEEEeCCC-CcchHHHHHHHHHHhc-C----CCeEEEEeccCCCC
Q psy11896 279 DFT---VEVERAL------RVLDGAILVLCAVG-GVQSQTLTVNRQMKRY-D----VPCIAFINKLDRLG 333 (1043)
Q Consensus 279 df~---~e~~~~l------~~~D~~ilVvda~~-g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~ 333 (1043)
+|. ......+ +.+|++++|+|... .........++.+... + .|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 99 EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp ETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred CCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 764 2333332 26899999988754 4444454555554332 3 69999999999864
No 337
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.21 E-value=3.4e-11 Score=136.59 Aligned_cols=160 Identities=15% Similarity=0.134 Sum_probs=102.1
Q ss_pred cc-ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc-----h---HHHHHHHhhh
Q psy11896 3 HK-VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD-----F---TVEVERALRV 73 (1043)
Q Consensus 3 ~k-~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~-----~---~~~~~~~~~~ 73 (1043)
++ +.++ |..++||+|.....+......+..+++|+++....+.+++..+.+|||||+.. + ...+...+..
T Consensus 179 ~~~V~lv-G~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~ 257 (364)
T 2qtf_A 179 IPSIGIV-GYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKY 257 (364)
T ss_dssp CCEEEEE-CBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHh
Confidence 45 4455 99999999998777777767778899999999999999999999999999832 1 2234556789
Q ss_pred cCEEEEEEeCCCCC--chhH-HHHHHHHHh---cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 74 LDGAILVLCAVGGV--QSQT-LTVNRQMKR---YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 74 aD~iIlVvDa~~~~--~~~~-~~~~~~l~~---~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+|++++|+|+++.. .... ......+.. .++|+++|.||+|+.+.......+.+...... + ....
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~------l----~~~~ 327 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE------L----YSPI 327 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHH------H----CSCE
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHH------h----cCCC
Confidence 99999999998653 1111 112223333 46899999999999764432222222111000 0 0112
Q ss_pred eeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+++++||++|.|+++|++.+...+.
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 35689999999999999999987654
No 338
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.20 E-value=8.1e-11 Score=122.96 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=73.8
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
.-.+|+++|++|+|||||+++|+.... .. ......|.|..... +.+++ .+.++||||+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~------------------~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~ 82 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-LA------------------RTSKTPGRTQLINL--FEVAD-GKRLVDLPGY 82 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC--------------------------------CCEEE--EEEET-TEEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cc------------------cccCCCccceeeEE--EEecC-CEEEEECcCC
Confidence 346799999999999999999963320 00 01123344443222 33344 6889999998
Q ss_pred CCc----------hHHHHHHh---HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 278 VDF----------TVEVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 278 ~df----------~~e~~~~l---~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.++ ...+...+ +.+|++++++|+..+.......+...+...++|.+++.||+|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 83 GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp C------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred cccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 542 22222333 57899999999998877666666677777899999999999976
No 339
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.20 E-value=1.6e-11 Score=136.13 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=79.9
Q ss_pred CeeEEEEeCCCCc-------------chHHHHHHHhhhcCEEE-EEEeCCCCCchhHH-HHHHHHHhcCCCEEEEEecCC
Q psy11896 49 DHNINIIDTPGHV-------------DFTVEVERALRVLDGAI-LVLCAVGGVQSQTL-TVNRQMKRYDVPCIAFINKLD 113 (1043)
Q Consensus 49 ~~~i~liDTPG~~-------------~~~~~~~~~~~~aD~iI-lVvDa~~~~~~~~~-~~~~~l~~~~~piilvlNKiD 113 (1043)
..++.||||||+. .+...+..+++.++.+| +|+|++.+...++. .++..+...++|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4689999999974 35566778888888776 79999987776664 466666667899999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhh
Q psy11896 114 RLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 171 (1043)
Q Consensus 114 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~ 171 (1043)
+...... ..+.++..+ . .....+.+++++||++|.|+++|++.+...
T Consensus 204 l~~~~~~-~~~~~~~~~---------~-~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 204 LMDEGTD-ARDVLENKL---------L-PLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GSCTTCC-CHHHHTTCS---------S-CCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred cCCCCch-HHHHHhCCc---------C-cCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 9753221 112221110 0 011235678999999999999999998763
No 340
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.19 E-value=1.1e-11 Score=139.33 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=106.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCee--EEEEeCCCCcchHHHHHHHhhhcCEEEE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN--INIIDTPGHVDFTVEVERALRVLDGAIL 79 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~--i~liDTPG~~~~~~~~~~~~~~aD~iIl 79 (1043)
.+|+.++ |..++||+|.......+.+..+ ..+++.+.....+..++.. +.||||||+.++...+..+++.+|++++
T Consensus 155 ~~~i~i~-G~~~~GKssli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 155 LIKCVVV-GDGAVGKTCLLISYTTNAFPGE-YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHSCCCCS-CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred eeEEEEE-CCCCCChHHHHHHHHhCCCCcc-cCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 3677777 9999999999766665555433 3445555555566666654 5599999999998888889999999999
Q ss_pred EEeCCCCCchhHHH--HHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhcccc---ccccCCCCccceeeee
Q psy11896 80 VLCAVGGVQSQTLT--VNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISN---ESLSEHKPIEYIRNIG 152 (1043)
Q Consensus 80 VvDa~~~~~~~~~~--~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ii~ 152 (1043)
|+|+++..+..... ....+... ++|+++|+||+|+..... ..+.+.......+.. ..+. ......++++
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~ 308 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLAMA--KEIGAVKYLE 308 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHHHHHHH--HHTTCSEEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccc--hhhhccccccccccHHHHHHHH--HHcCCcEEEE
Confidence 99998654433322 22333333 789999999999864211 111111100000000 0000 0012236789
Q ss_pred eeecccCCcchHHHHHHhhc
Q psy11896 153 ISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 153 iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+||++|.|++++++.+...+
T Consensus 309 ~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 309 CSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999887643
No 341
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.19 E-value=1.3e-11 Score=126.49 Aligned_cols=117 Identities=18% Similarity=0.126 Sum_probs=70.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEE---EecCeeEEEEcCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYT---LWKDHNINIIDTPG 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~---~~~~~~i~liDtPG 276 (1043)
.+|+++|.+|+|||||+++|+........ . .....|+......... ..+...+.+|||||
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~------~-----------~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G 65 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG------M-----------QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAG 65 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC----------------------------CSEEEEEEEC---------CEEEEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC------C-----------cceeccEEeEEeeeccccCCCCceEEEEEecCC
Confidence 47999999999999999999743111100 0 0011121111111111 11456899999999
Q ss_pred CCCchHHHHHHhHhcCeEEEEEeCCCCcc-hHHHHHH-HHHHh--cCCCeEEEEeccCCCC
Q psy11896 277 HVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVN-RQMKR--YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~df~~e~~~~l~~~D~~ilVvda~~g~~-~~t~~~~-~~~~~--~~~p~ivviNKiD~~~ 333 (1043)
+.+|......+++.+|++++|+|..++.. -.....| ..+.. .+.|+++|.||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 66 REEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp HHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred CHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 88777666677888999999999987632 2222222 22222 3789999999999863
No 342
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.18 E-value=1.4e-11 Score=148.04 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=77.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeee------e--EEEEecCeeE
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA------A--TYTLWKDHNI 269 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~------~--~~~~~~~~~i 269 (1043)
+..+|+++|.+|+|||||+++|+...-... .....|.++... . .....++..+
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~-------------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~ 100 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPK-------------------ESQTHGLNVVTKQAPNIKGLENDDELKECLF 100 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC------------------------------CCCEEEEEGGGSGGGTTCSTTTTCEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCC-------------------CCCccceEEEEeccccccceeecCCCceEEE
Confidence 457899999999999999999984321100 001111111110 0 0011235789
Q ss_pred EEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc--CCCeEEEEeccCCCC
Q psy11896 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLG 333 (1043)
Q Consensus 270 ~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~--~~p~ivviNKiD~~~ 333 (1043)
++|||||+..|.......++.+|++|+|+|+... ......+..+... +.|+++|+||+|+..
T Consensus 101 ~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp EEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 9999999999888777888999999999999864 3344445555554 489999999999863
No 343
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.18 E-value=1.2e-10 Score=120.22 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=68.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe--eEEEEcCCC
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPG 276 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDtPG 276 (1043)
..+|+++|.+|+|||||+++|+.....+.. ++ ...|.+... ..+.+++. .+.+|||+|
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~--------------~~----~~~~~~~~~--~~~~~~~~~~~l~~~Dt~~ 65 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDS--------------DX----EVLGEDTYE--RTLMVDGESATIILLDMWE 65 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----------------------GGGCTTEEE--EEEEETTEEEEEEEECCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCc--------------cc----cccceeEEE--EEEEECCeEEEEEEEEecc
Confidence 478999999999999999999743222111 00 011222211 22344443 567899999
Q ss_pred CCC-chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH----hcCCCeEEEEeccCCC
Q psy11896 277 HVD-FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK----RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 277 ~~d-f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~ 332 (1043)
... +........+.+|++++|+|..+.........| ..+. ..++|+++|.||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 66 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp C----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred CcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 765 222223456789999999999864332222222 2222 2478999999999975
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.17 E-value=5e-11 Score=125.42 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=77.9
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCC
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 276 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG 276 (1043)
.+..+|+++|++|+|||||+++|+....... +.. ....++ ..+....+++|||||
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~----~~~--------------~~~~~~-------~~~~~~~~~l~Dt~G 64 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVS--------------QEPLSA-------ADYDGSGVTLVDFPG 64 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCC--------------SSCEEE-------TTGGGSSCEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe----eee--------------cCceEE-------EEeeCceEEEEECCC
Confidence 3457899999999999999999984331110 000 000011 011567899999999
Q ss_pred CCCchHHHHHHhHh----cCeEEEEEeCC---CCcchHHHHHHHHHH------hcCCCeEEEEeccCCCCCC
Q psy11896 277 HVDFTVEVERALRV----LDGAILVLCAV---GGVQSQTLTVNRQMK------RYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 277 ~~df~~e~~~~l~~----~D~~ilVvda~---~g~~~~t~~~~~~~~------~~~~p~ivviNKiD~~~~~ 335 (1043)
+.+|...+..+++. +|++|+|+|+. +........+..... ..++|+++|+||+|+....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 65 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp CGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 99998888888876 89999999998 333333333322222 1588999999999998654
No 345
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.16 E-value=5.9e-11 Score=134.99 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=107.7
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH---------HHHHHHhhh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT---------VEVERALRV 73 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~---------~~~~~~~~~ 73 (1043)
+++.++ |..++||+|...............+++|.+.....+...+..+.+|||||+.+.. ..+......
T Consensus 168 ~~v~lv-G~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 246 (357)
T 2e87_A 168 PTVVIA-GHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYL 246 (357)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGT
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhc
Confidence 456666 9999999999777776665556678999998888888888899999999986421 122223346
Q ss_pred cCEEEEEEeCCCCC--chhH-HHHHHHHHh-c-CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccce
Q psy11896 74 LDGAILVLCAVGGV--QSQT-LTVNRQMKR-Y-DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYI 148 (1043)
Q Consensus 74 aD~iIlVvDa~~~~--~~~~-~~~~~~l~~-~-~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 148 (1043)
+|++++|+|++... .... ...+..+.. . ++|+++|+||+|+.... .. +...+.+. . ...
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~--~~-~~~~~~~~----~---------~~~ 310 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE--NI-KRLEKFVK----E---------KGL 310 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH--HH-HHHHHHHH----H---------TTC
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH--HH-HHHHHHHH----h---------cCC
Confidence 99999999987543 3332 223333332 2 79999999999986421 11 22222111 0 113
Q ss_pred eeeeeeecccCCcchHHHHHHhhccc
Q psy11896 149 RNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 149 ~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+++++||++|+|+++|++.+...+..
T Consensus 311 ~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 311 NPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 56889999999999999999887754
No 346
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.16 E-value=4.5e-11 Score=123.37 Aligned_cols=153 Identities=16% Similarity=0.066 Sum_probs=95.8
Q ss_pred CccceeeeeecccccccCCccccC--CChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcc-hHHHHHHHhhhcCE
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVM--DSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVD-FTVEVERALRVLDG 76 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~--d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~-~~~~~~~~~~~aD~ 76 (1043)
.||+.++ |++++||+|....++. +.+..+ .++++.+.....+.+++. ++.+|||+|... +......+++.+|+
T Consensus 6 ~~kv~lv-G~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 6 YYRVVLI-GEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred eEEEEEE-CCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4788888 9999999998766653 222322 233555555555666665 578999999865 22234557788999
Q ss_pred EEEEEeCCCCCchhHHH-HHHHHHh----cCCCEEEEEecCCCCCCC-HH-HHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 77 AILVLCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRLGAD-PY-RVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~~-~~~~l~~----~~~piilvlNKiDl~~~~-~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+++|+|.++..+..... .+..+.. .++|+++|.||+|+.... .. .....+... .. .+
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~-------------~~---~~ 147 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVV-------------FD---XK 147 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-------------TT---CE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHH-------------hC---Cc
Confidence 99999998643323222 2222322 378999999999985321 10 000111111 11 25
Q ss_pred eeeeeecccCCcchHHHHHHhhc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
++.+||++|.|++++++.+...+
T Consensus 148 ~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 148 FIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEeccccCCCHHHHHHHHHHHH
Confidence 68899999999999999988655
No 347
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.15 E-value=2e-10 Score=119.09 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=76.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEEcCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINIIDTP 275 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDtP 275 (1043)
...+|+++|+.|+|||||+++|+....... ....++.......+.+++ ..+.+||||
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~---------------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~ 62 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------------------SKSTIGVEFATRSIQVDGKTIKAQIWDTA 62 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------------------------CCCSCEEEEEEEEETTEEEEEEEEECS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC---------------------CCCccceeEEEEEEEECCEEEEEEEEECC
Confidence 357899999999999999999974321110 011111222233344555 467889999
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHHh---cCCCeEEEEeccCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 332 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 332 (1043)
|+..|.......++.+|++++|+|............| ..+.. .+.|+++++||+|+.
T Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp SGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9988876666777889999999999875443333223 22222 467999999999975
No 348
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.15 E-value=2e-11 Score=138.57 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=71.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhccc---CCceeeeeecCCcccc---ccccch---hhhhhcCceEeeeeE--------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYT---GRISEMHEVRGKDNVG---AVMDSM---ELERQRGITIQSAAT-------- 260 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~---~~~~~~~~v~~~~~~~---~~~d~~---~~e~~~giTi~~~~~-------- 260 (1043)
+.++|+++|++|+|||||+++|.... +.---....+.+.+.. ...|.. ......+..+.....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 35789999999999999999997542 1111111111111100 000000 000111222211111
Q ss_pred --------EEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 261 --------YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 261 --------~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+.+.++.+.||||||... .....+..+|.+++|+|+..+...+... .....+|.++|+||+|+.
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADGE 230 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCGG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCCc
Confidence 1134678999999999654 2333458999999999988665443222 111346999999999985
No 349
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.14 E-value=4.2e-11 Score=123.33 Aligned_cols=126 Identities=18% Similarity=0.281 Sum_probs=79.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGH 277 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~ 277 (1043)
+..+|+++|+.|+|||||+++|+....... + .....+++. .+.+..+.+|||||+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~----~--------------~~~~~~~~~-------~~~~~~~~l~Dt~G~ 101 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----V--------------VSQEPLSAA-------DYDGSGVTLVDFPGH 101 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------------------------CCCCTTCSEEEETTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc----c--------------ccCCCceee-------eecCCeEEEEECCCC
Confidence 346899999999999999999974321110 0 000111111 125678999999999
Q ss_pred CCchHHHHHHhHh----cCeEEEEEeCCCCcch-H-HHHHHHHHH-------hcCCCeEEEEeccCCCCC-CHHHHHHHH
Q psy11896 278 VDFTVEVERALRV----LDGAILVLCAVGGVQS-Q-TLTVNRQMK-------RYDVPCIAFINKLDRLGA-DPYRVINQM 343 (1043)
Q Consensus 278 ~df~~e~~~~l~~----~D~~ilVvda~~g~~~-~-t~~~~~~~~-------~~~~p~ivviNKiD~~~~-~~~~~~~~i 343 (1043)
.+|...+...++. +|++++|+|+...... . ....+.... ..++|+++|+||+|+... ...+..+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp CBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9887666666655 8999999999822111 1 111121111 148999999999999754 455555555
Q ss_pred HHHhC
Q psy11896 344 RQKVG 348 (1043)
Q Consensus 344 ~~~l~ 348 (1043)
.+.++
T Consensus 182 ~~~l~ 186 (193)
T 2ged_A 182 ESEIQ 186 (193)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 350
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.13 E-value=1.6e-10 Score=138.09 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=87.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccch-------------hhhhhcCce-----Eeee
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSM-------------ELERQRGIT-----IQSA 258 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~-------------~~e~~~giT-----i~~~ 258 (1043)
+...+|+|+|++|+|||||+|+|+.........+..........+.... +.....++. ....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 4568999999999999999999996543200000000000000000000 000000000 0011
Q ss_pred eEEEEecC---eeEEEEcCCCCCC-----------chHHHHHHhHhcCeEEEEEeCCC-CcchHHHHHHHHHHhcCCCeE
Q psy11896 259 ATYTLWKD---HNINIIDTPGHVD-----------FTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDVPCI 323 (1043)
Q Consensus 259 ~~~~~~~~---~~i~liDtPG~~d-----------f~~e~~~~l~~~D~~ilVvda~~-g~~~~t~~~~~~~~~~~~p~i 323 (1043)
.....+.+ ..++||||||+.+ |...+..+++.+|++++|+|+.. +...+...+++.+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 12222332 4799999999876 66777888999999999999987 678888888888887889999
Q ss_pred EEEeccCCCC
Q psy11896 324 AFINKLDRLG 333 (1043)
Q Consensus 324 vviNKiD~~~ 333 (1043)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999974
No 351
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=1.6e-11 Score=140.80 Aligned_cols=82 Identities=22% Similarity=0.226 Sum_probs=46.2
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE-----------------
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL----------------- 263 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----------------- 263 (1043)
+|+++|++|+|||||+|+|+..... ....+++|+........
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~---------------------~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~ 60 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVE---------------------IANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------------------------CCEEEEEEEEECSCSSSCCSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCc---------------------ccCCCCcccCCceEEEeeccCCchHHhhhhcccc
Confidence 6999999999999999999854311 11123334433332211
Q ss_pred ----ec---CeeEEEEcCCCCCCchHH-------HHHHhHhcCeEEEEEeCCCC
Q psy11896 264 ----WK---DHNINIIDTPGHVDFTVE-------VERALRVLDGAILVLCAVGG 303 (1043)
Q Consensus 264 ----~~---~~~i~liDtPG~~df~~e-------~~~~l~~~D~~ilVvda~~g 303 (1043)
++ ...+.||||||+.++... ...+++.+|++++|+|+.++
T Consensus 61 ~~~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp SSCEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 12 357999999998764221 12346899999999999875
No 352
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.12 E-value=2.7e-11 Score=127.52 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=86.7
Q ss_pred CccceeeeeecccccccCCccccCCChhh---hhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhh----c
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMEL---ERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV----L 74 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~---e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~----a 74 (1043)
.+|+.++ |..++||+|...+.....+.. ...|+++.+. ....+.+|||||+.++...+..+++. +
T Consensus 12 ~~~i~~~-G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 12 QPSIIIA-GPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4677777 999999999976666555432 2334333332 56789999999999998888888887 9
Q ss_pred CEEEEEEeCC-C--CCchhHHHHHHHHHh------cCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCC
Q psy11896 75 DGAILVLCAV-G--GVQSQTLTVNRQMKR------YDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 75 D~iIlVvDa~-~--~~~~~~~~~~~~l~~------~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
|++|+|+|++ + ........+...+.. .++|+++|+||+|+..... ....+.+.+.+..+...
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~-------- 155 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER-------- 155 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH--------
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH--------
Confidence 9999999998 3 332233333333321 4789999999999976532 33334444333222111
Q ss_pred ccceeeeeeeecccCC
Q psy11896 145 IEYIRNIGISAHIDSG 160 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~G 160 (1043)
...+++.+||++|.+
T Consensus 156 -~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 -RKKSLNEVERKINEE 170 (218)
T ss_dssp -HHHHHHC--------
T ss_pred -Hhccccccccccccc
Confidence 112457799998876
No 353
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.12 E-value=1.7e-10 Score=132.52 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=75.5
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEcCCC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPG 276 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDtPG 276 (1043)
....|+++|++|||||||+++|+.....+ . ....+|.......+.+.+ ..+.++||||
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i---------------~------~~~ftTl~p~~G~V~~~~~~~~~l~DtpG 214 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKI---------------A------PYPFTTLSPNLGVVEVSEEERFTLADIPG 214 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEE---------------C------CCTTCSSCCEEEEEECSSSCEEEEEECCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccc---------------c------CcccceecceeeEEEecCcceEEEEeccc
Confidence 34679999999999999999997543211 1 122334444445566665 7899999999
Q ss_pred CCC-------chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh-----cCCCeEEEEeccCCCC
Q psy11896 277 HVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLG 333 (1043)
Q Consensus 277 ~~d-------f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~~ 333 (1043)
+.+ +.....+.+..+|.++.++|+......+....+++... ...|.++++||+|...
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 865 23344555677999999999972111222222233322 3689999999999863
No 354
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.12 E-value=6.6e-11 Score=126.70 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=80.4
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhc--CCccccceEEEEecCeeEEEEeCCCCcc-----------hHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQR--GITIQSAATYTLWKDHNINIIDTPGHVD-----------FTVEVER 69 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~--G~T~~~~~~~~~~~~~~i~liDTPG~~~-----------~~~~~~~ 69 (1043)
+|+.++ |..++||+|...+.+.........+ ++|++.....+.+++..+.||||||+.+ +...+..
T Consensus 30 ~~i~lv-G~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 30 LRIVLV-GKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 677888 9999999999877776666666666 8899998889999999999999999753 4444455
Q ss_pred HhhhcCEEEEEEeCCCCCchhHHHHHHHHH-----hcCCCEEEEEecCCCCC
Q psy11896 70 ALRVLDGAILVLCAVGGVQSQTLTVNRQMK-----RYDVPCIAFINKLDRLG 116 (1043)
Q Consensus 70 ~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~-----~~~~piilvlNKiDl~~ 116 (1043)
+++.+|++|+|+|++. ....+...+..+. ...+|+++|+||+|+..
T Consensus 109 ~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 159 (239)
T ss_dssp TTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred cCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence 5667899999999874 4444444333332 23469999999999864
No 355
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.11 E-value=2.4e-11 Score=145.95 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=96.9
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceE------EEE----ecCeeEEEEeCCCCcchHHHHHHHh
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAAT------YTL----WKDHNINIIDTPGHVDFTVEVERAL 71 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~------~~~----~~~~~i~liDTPG~~~~~~~~~~~~ 71 (1043)
.+|+.++ |..++||||...+...+.+.....|.+..+.... .+. ..+..+.+|||||+..+......++
T Consensus 41 ~~kV~lv-G~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l 119 (535)
T 3dpu_A 41 EIKVHLI-GDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM 119 (535)
T ss_dssp EEEEEEE-SSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence 3688888 9999999999877777766555444333332211 111 1257899999999998888788889
Q ss_pred hhcCEEEEEEeCCCCCchhHHHHHHHHHhc--CCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCcccee
Q psy11896 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIR 149 (1043)
Q Consensus 72 ~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~--~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 149 (1043)
+.+|++|+|+|++.. .........+... ++|+++|+||+|+....... .+.+++.+. ....+
T Consensus 120 ~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~-~~~~~~~~~-------------~~~~~ 183 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE-QKKINERFP-------------AIENR 183 (535)
T ss_dssp HSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC-HHHHHHHCG-------------GGTTC
T ss_pred cCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC-HHHHHHHHH-------------hcCCc
Confidence 999999999999753 3344445555554 48999999999997532110 122222221 01125
Q ss_pred eeeeeecccCCcchHHHHHHhhccc
Q psy11896 150 NIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 150 ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
++++||++|.|+++|++.+...+..
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTC
T ss_pred eEEEecCcccCHHHHHHHHHHHHhc
Confidence 7899999999999999999876653
No 356
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=1.4e-11 Score=141.25 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=90.0
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe---------------------c---CeeEEEEeCC
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW---------------------K---DHNINIIDTP 58 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~---------------------~---~~~i~liDTP 58 (1043)
+|+.++ |..++||+|...+.+.........|++|++++.+...+ + ..++.|||||
T Consensus 1 ~kI~iv-G~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVV-GKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 477788 99999999987666655555568899999999876432 2 2579999999
Q ss_pred CCcchH-------HHHHHHhhhcCEEEEEEeCCCCCc----------h-h------------------------------
Q psy11896 59 GHVDFT-------VEVERALRVLDGAILVLCAVGGVQ----------S-Q------------------------------ 90 (1043)
Q Consensus 59 G~~~~~-------~~~~~~~~~aD~iIlVvDa~~~~~----------~-~------------------------------ 90 (1043)
|+.+.. ..+..+++.+|++++|+|++++.. + .
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~ 159 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKL 159 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTS
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 996422 223345789999999999986410 0 0
Q ss_pred ------------------------------------------H-HHHHHHHHhcCCCEEEEEecCCCCCCCHHHHHHHHH
Q psy11896 91 ------------------------------------------T-LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMR 127 (1043)
Q Consensus 91 ------------------------------------------~-~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~~~l~ 127 (1043)
+ ..+...+....+|+++|+||+|+.. ...++.+.
T Consensus 160 ~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~---~~~l~~l~ 236 (397)
T 1wxq_A 160 QKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAAS---DEQIKRLV 236 (397)
T ss_dssp SCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSC---HHHHHHHH
T ss_pred cCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCccccc---hHHHHHHH
Confidence 0 1111122234689999999999862 23344444
Q ss_pred HhhhhccccccccCCCCccceeeeeeeecccCCcchHHH-HHHhhcccccccccc
Q psy11896 128 QKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTE-RILFYTGRISEMHET 181 (1043)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~-~l~~~l~~~~~~~~~ 181 (1043)
+.+.. ...+++++||+.+.|+.+|++ .+..+++.-+.++..
T Consensus 237 ~~~~~-------------~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~ 278 (397)
T 1wxq_A 237 REEEK-------------RGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVL 278 (397)
T ss_dssp HHHHH-------------TTCEEEEECHHHHHHHHSCSSSCCCCSCC--------
T ss_pred HHHhh-------------cCCcEEEEeccchhhHHHHHhhhhhhhcCCCcccccc
Confidence 43210 013689999999999998877 777777654433333
No 357
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.09 E-value=7e-10 Score=114.26 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=77.5
Q ss_pred ccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe--eEEEEc
Q psy11896 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIID 273 (1043)
Q Consensus 196 ~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liD 273 (1043)
.+...+|+++|+.|+|||||+++|+...... .....++.......+.+++. .+.+||
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~---------------------~~~~t~~~~~~~~~i~~~g~~~~~~i~D 84 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL---------------------ESKSTIGVEFATRSIQVDGKTIKAQIWD 84 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCC---------------------SCCCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCC---------------------CCCCccceEEEEEEEEECCEEEEEEEEE
Confidence 3456889999999999999999997432111 00112222233334555554 456799
Q ss_pred CCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH-HHHH---hcCCCeEEEEeccCCC
Q psy11896 274 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 332 (1043)
Q Consensus 274 tPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 332 (1043)
|||+.+|...+...++.+|++++|+|.......+....| .... ..+.|+++++||+|+.
T Consensus 85 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 85 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp ECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999988877777778889999999998864332222222 2222 2467899999999975
No 358
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.09 E-value=2.7e-10 Score=140.13 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=54.1
Q ss_pred eeEEEEcCCCCCC---chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHH-HHHhcCCCeEEEEeccCCC
Q psy11896 267 HNINIIDTPGHVD---FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 267 ~~i~liDtPG~~d---f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~-~~~~~~~p~ivviNKiD~~ 332 (1043)
..+.||||||+.+ +...+..+++.+|++|+|+|+..+........|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999654 4455667889999999999999988877777775 4555688999999999975
No 359
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.09 E-value=6.2e-11 Score=125.04 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=72.7
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeE----EE----------E
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT----YT----------L 263 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~----~~----------~ 263 (1043)
++++|+++|++|+|||||+++|+.......+.+.+.... ....|....+ ..|+++..... .+ .
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~--~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV--VSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC--CCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC--CCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHh
Confidence 468899999999999999999997643322333332211 0111211111 12333111000 01 3
Q ss_pred ecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.+..+.+|||||..+-.... -...+.+++|+|+..+... .+......+.|.++|+||+|+.
T Consensus 106 ~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred cCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 456789999999952211100 0245789999999887432 2333344578999999999974
No 360
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.07 E-value=9.8e-11 Score=130.82 Aligned_cols=116 Identities=14% Similarity=0.205 Sum_probs=83.3
Q ss_pred cCeeEEEEeCCCCcc-------------hHHHHHHHhhhcCEEEEEEeC-CCCCchhH-HHHHHHHHhcCCCEEEEEecC
Q psy11896 48 KDHNINIIDTPGHVD-------------FTVEVERALRVLDGAILVLCA-VGGVQSQT-LTVNRQMKRYDVPCIAFINKL 112 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~-------------~~~~~~~~~~~aD~iIlVvDa-~~~~~~~~-~~~~~~l~~~~~piilvlNKi 112 (1043)
.+.++.||||||+.+ +...+..+++.+|++++|+|+ +.+....+ ..++..+...++|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 346899999999864 566788899999999999997 45555343 467777777889999999999
Q ss_pred CCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecc---cCCcchHHHHHHhhccc
Q psy11896 113 DRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHI---DSGKTTLTERILFYTGR 174 (1043)
Q Consensus 113 Dl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~---g~Gi~~L~~~l~~~l~~ 174 (1043)
|+..... ...+.+...+ . .....+.++.++||.+ +.|++++++.+..+++.
T Consensus 209 Dl~~~~~-~~~~~~~~~~---------~-~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDKGT-DAMEVLTGRV---------I-PLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCSSC-CCHHHHTTSS---------S-CCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred ccCCcch-HHHHHHhCCC---------c-cCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 9975432 1122222111 0 1124567788889988 89999999998887764
No 361
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.07 E-value=1.3e-10 Score=120.57 Aligned_cols=154 Identities=17% Similarity=0.101 Sum_probs=108.3
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCe--eEEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|.........+..+..|.++.+...+.+.+++. .+.+|||||+.++...+..+++.+|++++|
T Consensus 6 ~kv~lv-G~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 6 FKVVLI-GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred EEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 677888 99999999998888777777777777777777777777774 678999999998877777888999999999
Q ss_pred EeCCCCCchhHH-HHHHHHHh---cCCCEEEEEecCCCCCCC--HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLGAD--PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~-~~~~~l~~---~~~piilvlNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|.++....... ..+..+.. .+.|+++++||+|+.... .......+... .. ..++.+|
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-------------~~---~~~~d~S 148 (199)
T 2f9l_A 85 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-------------NN---LSFIETS 148 (199)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-------------TT---CEEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHH-------------cC---CeEEEEe
Confidence 998864332222 12222222 367899999999985321 11111122111 11 2456799
Q ss_pred ecccCCcchHHHHHHhhcc
Q psy11896 155 AHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~l~ 173 (1043)
|+++.|++++++.+...+.
T Consensus 149 al~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887664
No 362
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.06 E-value=1.1e-11 Score=134.27 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=91.7
Q ss_pred Cccceeeeeec---------ccccccCCccccC---CChhhhhhcCC-ccccceEE----------------EEecCeeE
Q psy11896 2 EHKVKIIHIKQ---------EQVRGKDNVGAVM---DSMELERQRGI-TIQSAATY----------------TLWKDHNI 52 (1043)
Q Consensus 2 ~~k~~i~~~~~---------~~gk~s~~~~~~~---d~~~~e~~~G~-T~~~~~~~----------------~~~~~~~i 52 (1043)
.||+.++ |+. ++||+|...+++. +.+..+..+++ +.+..... +......+
T Consensus 19 ~~ki~lv-G~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 19 TYNISVV-GLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp CEEEEEE-ESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred eeEEEEE-CCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 4788888 999 9999999877776 44555555544 33322111 12234578
Q ss_pred EEEe------CCCCcchH-----------------HHHHHHhh---------------------hcCEEEEEEeCCCC--
Q psy11896 53 NIID------TPGHVDFT-----------------VEVERALR---------------------VLDGAILVLCAVGG-- 86 (1043)
Q Consensus 53 ~liD------TPG~~~~~-----------------~~~~~~~~---------------------~aD~iIlVvDa~~~-- 86 (1043)
.||| |||...+. ..+..+++ ++|++|+|+|+++.
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 8998 55554322 22222333 69999999999875
Q ss_pred CchhHHH-HHHHH----HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCc
Q psy11896 87 VQSQTLT-VNRQM----KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161 (1043)
Q Consensus 87 ~~~~~~~-~~~~l----~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi 161 (1043)
.+..... .+..+ ...++|+++|+||+|+... .. .+...+... . ....+++.+||++|.|+
T Consensus 178 ~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~-v~~~~~~~~----~--------~~~~~~~e~SAk~g~gv 242 (255)
T 3c5h_A 178 RNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--RY-IRDAHTFAL----S--------KKNLQVVETSARSNVNV 242 (255)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH--HH-HHHHHHHHH----T--------SSSCCEEECBTTTTBSH
T ss_pred hhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc--HH-HHHHHHHHH----h--------cCCCeEEEEECCCCCCH
Confidence 3333322 12222 2357999999999998532 11 122222110 0 01235688999999999
Q ss_pred chHHHHHHhhc
Q psy11896 162 TTLTERILFYT 172 (1043)
Q Consensus 162 ~~L~~~l~~~l 172 (1043)
+++++.+...+
T Consensus 243 ~elf~~l~~~l 253 (255)
T 3c5h_A 243 DLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987643
No 363
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.06 E-value=1.6e-10 Score=131.22 Aligned_cols=135 Identities=18% Similarity=0.158 Sum_probs=80.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeec--CC--------ccccc--------cccchh--hh------hh--
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVR--GK--------DNVGA--------VMDSME--LE------RQ-- 250 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~--~~--------~~~~~--------~~d~~~--~e------~~-- 250 (1043)
..+|+++|.+|+|||||+|+|+...-.....+.+. .+ ..+.. +.+... .+ ..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 46799999999999999999986432110000000 00 00000 011111 01 11
Q ss_pred --cCceEeeeeEEEEec-CeeEEEEcCCCCCC-------------chHHHHHHhHhcC-eEEEEEeCCCCcchHHH-HHH
Q psy11896 251 --RGITIQSAATYTLWK-DHNINIIDTPGHVD-------------FTVEVERALRVLD-GAILVLCAVGGVQSQTL-TVN 312 (1043)
Q Consensus 251 --~giTi~~~~~~~~~~-~~~i~liDtPG~~d-------------f~~e~~~~l~~~D-~~ilVvda~~g~~~~t~-~~~ 312 (1043)
.|+........+... ...+.||||||..+ +...+..+++.++ .+++|+|+..++..+.. .++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 344433333333333 57899999999643 2334455565444 55667888777766655 367
Q ss_pred HHHHhcCCCeEEEEeccCCCC
Q psy11896 313 RQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 313 ~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+.+...+.|+++|+||+|+..
T Consensus 191 ~~~~~~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 191 KEVDPQGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHCTTCTTEEEEEECGGGSC
T ss_pred HHhCcCCCceEEEeccccccC
Confidence 777777899999999999874
No 364
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.05 E-value=2.3e-10 Score=139.24 Aligned_cols=169 Identities=14% Similarity=0.095 Sum_probs=96.4
Q ss_pred eeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcccCCceeeee
Q psy11896 152 GISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHE 231 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~ 231 (1043)
..++..+.|.++|...+......+...-.. ..-...+|+++|..++|||||+|+|+...-.....+-
T Consensus 17 ~~~~~~~~~~~~li~~inkl~d~l~~lg~~-------------~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~ 83 (772)
T 3zvr_A 17 RGSHMGNRGMEDLIPLVNRLQDAFSAIGQN-------------ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI 83 (772)
T ss_dssp --------CGGGHHHHHHHHHHHHHTTTCC-------------GGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC
T ss_pred cccccccccHHHHHHHHHHHHHHHHhcCcc-------------ccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc
Confidence 366788889888887776554432211000 0123568999999999999999999864321110000
Q ss_pred e----------cCCccccc--------cccchhh------------hhhcCceEeeeeEEEEec-CeeEEEEcCCCCCC-
Q psy11896 232 V----------RGKDNVGA--------VMDSMEL------------ERQRGITIQSAATYTLWK-DHNINIIDTPGHVD- 279 (1043)
Q Consensus 232 v----------~~~~~~~~--------~~d~~~~------------e~~~giTi~~~~~~~~~~-~~~i~liDtPG~~d- 279 (1043)
+ .....+.. +.+..+. ....+++-......+.+. ...+.|+||||...
T Consensus 84 ~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~ 163 (772)
T 3zvr_A 84 VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKV 163 (772)
T ss_dssp SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCC
T ss_pred ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccC
Confidence 0 00000000 1111100 011233333333333343 45799999999654
Q ss_pred ------------chHHHHHHh-HhcCeEEEEEeCCCCcchHHH-HHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 280 ------------FTVEVERAL-RVLDGAILVLCAVGGVQSQTL-TVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 280 ------------f~~e~~~~l-~~~D~~ilVvda~~g~~~~t~-~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+...+..++ ..+|.+++|+|+..+...+.. .+++.+...+.|+++|+||+|+..
T Consensus 164 ~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 164 PVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMD 231 (772)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSC
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCC
Confidence 112234444 578999999999998877776 678888888999999999999874
No 365
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.05 E-value=2.6e-10 Score=129.48 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=63.5
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCe--eEEEEcCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDH--NINIIDTPGH 277 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~--~i~liDtPG~ 277 (1043)
.+|+++|++|+|||||+++|+........ ..+....+..+++++......+.+.+. .+++|||||+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~------------~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPER------------VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCC------------cccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence 57999999999999999998643211100 011111112233333333333444443 7899999999
Q ss_pred CCchH-------HHH-------HHhHhc-------------CeEEEEEeC-CCCcchHHHHHHHHHHhcCCCeEEEEecc
Q psy11896 278 VDFTV-------EVE-------RALRVL-------------DGAILVLCA-VGGVQSQTLTVNRQMKRYDVPCIAFINKL 329 (1043)
Q Consensus 278 ~df~~-------e~~-------~~l~~~-------------D~~ilVvda-~~g~~~~t~~~~~~~~~~~~p~ivviNKi 329 (1043)
.++.. .+. .+++.+ |+++++|+. ..++......+++.+ ..++|+|+|+||+
T Consensus 106 gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~ 184 (361)
T 2qag_A 106 GDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKA 184 (361)
T ss_dssp ----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECC
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECC
Confidence 55432 121 344333 457788876 566766666555554 4678999999999
Q ss_pred CCCC
Q psy11896 330 DRLG 333 (1043)
Q Consensus 330 D~~~ 333 (1043)
|+..
T Consensus 185 Dl~~ 188 (361)
T 2qag_A 185 DTLT 188 (361)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 9874
No 366
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=2.1e-10 Score=126.11 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=77.7
Q ss_pred HHhhhcCEEEEEEeCCCCCchhHHHHHHHH---HhcCCCEEEEEecCCCCCCCHH-HHHHHHHHhhhhccccccccCCCC
Q psy11896 69 RALRVLDGAILVLCAVGGVQSQTLTVNRQM---KRYDVPCIAFINKLDRLGADPY-RVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 69 ~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l---~~~~~piilvlNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
..+.++|.+++|+|++.+..... .+-+++ ...++|.++|+||+|+.+.... ...+.+.+.+. .
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~------------~ 148 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR------------N 148 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH------------H
T ss_pred HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHH------------h
Confidence 36889999999999996555444 333333 4578999999999999753220 12233333321 0
Q ss_pred ccceeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 145 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 145 ~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.. .+++.+||.++.|+++|++... -..++++|++|+|||||++.|+..
T Consensus 149 ~g-~~v~~~sa~~~~g~~~L~~~~~-----------------------------G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 149 IG-YDVYLTSSKDQDSLADIIPHFQ-----------------------------DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp HT-CCEEECCHHHHTTCTTTGGGGT-----------------------------TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CC-CeEEEEecCCCCCHHHHHhhcC-----------------------------CCEEEEECCCCCCHHHHHHHhccc
Confidence 11 3678899999999988765431 135899999999999999999743
No 367
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.04 E-value=9.7e-10 Score=114.71 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=99.2
Q ss_pred ccceeeeeecccccccCCccccCCCh--hhhhhcCCccccceEEEEecCeeEEEEeCCCCcc----------hHHHHHHH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM--ELERQRGITIQSAATYTLWKDHNINIIDTPGHVD----------FTVEVERA 70 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~--~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~----------~~~~~~~~ 70 (1043)
+++.++ |..++||+|.........+ .....+|+|+.... +.+++ .+.+|||||+.. +...+..+
T Consensus 27 ~~v~lv-G~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 27 IEVAFA-GRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp EEEEEE-ECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 356666 9999999998766665542 22457788876443 33444 789999999853 22222333
Q ss_pred h---hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHHHHHHHhhhhccccccccCCCCcc
Q psy11896 71 L---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVINQMRQKTSRWISNESLSEHKPIE 146 (1043)
Q Consensus 71 ~---~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~ 146 (1043)
+ +.+|++++|+|++.+....+..+..++...++|++++.||+|+.+... ++..+.+...+.. . ..
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~----------~-~~ 171 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLA----------F-NG 171 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG----------G-CS
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHh----------c-CC
Confidence 3 578999999999987766666667777778999999999999875321 1112333332210 0 11
Q ss_pred ceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 147 YIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 147 ~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
....+|+||+++.|++++++.+.....
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 245689999999999999999887654
No 368
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.02 E-value=6.2e-10 Score=125.69 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=87.8
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcC
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDT 274 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 274 (1043)
..+-.-+|+|+|.||+|||||+|+|+..... ....+++|++.....+.+.+.++.|+||
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~---------------------v~~~pftT~~~~~g~~~~~~~~i~l~D~ 126 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTESE---------------------AAEYEFTTLVTVPGVIRYKGAKIQMLDL 126 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBCCC---------------------GGGTCSSCCCEEEEEEEETTEEEEEEEC
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCCCc---------------------ccCCCCceeeeeeEEEEeCCcEEEEEeC
Confidence 3344568999999999999999999744321 2346789999999999999999999999
Q ss_pred CCCCCc-------hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh-----cCCCeEEEEeccCCC
Q psy11896 275 PGHVDF-------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRL 332 (1043)
Q Consensus 275 PG~~df-------~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~-----~~~p~ivviNKiD~~ 332 (1043)
||..+- ...+...++.+|++++|+|+.+.+.. ...+...+.. ...|.++++||+|+.
T Consensus 127 pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 127 PGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp GGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 997652 34467778999999999999875422 2222233322 356899999999985
No 369
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.00 E-value=1.9e-09 Score=118.70 Aligned_cols=112 Identities=12% Similarity=0.132 Sum_probs=75.1
Q ss_pred eEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCCCc
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF 280 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~df 280 (1043)
+|.++|..|+|||||+.++.... ... ....-+.|+......+. ...++++|||||+.+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~--~~~------------------~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM--QPL------------------DTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC--CSG------------------GGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCC--CCC------------------ccceecCeeeeeeEEEc-cEEEEEEEECCCchhc
Confidence 48899999999999998764211 000 00012233333333332 3478999999999999
Q ss_pred hH---HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHH----HH--hcCCCeEEEEeccCCCCC
Q psy11896 281 TV---EVERALRVLDGAILVLCAVGGVQSQTLTVNRQ----MK--RYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 281 ~~---e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~----~~--~~~~p~ivviNKiD~~~~ 334 (1043)
.. ....+++.++++|+|+|+.+. ......-|.. +. ..++|+++|.||+|+...
T Consensus 60 ~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 60 FEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred cchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 63 457788999999999999986 3344333322 21 247899999999999753
No 370
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.98 E-value=6.6e-10 Score=136.61 Aligned_cols=124 Identities=16% Similarity=0.147 Sum_probs=82.0
Q ss_pred eeEEEEeCCCCcc---hHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHH-HHHhcCCCEEEEEecCCCCCCC---H---
Q psy11896 50 HNINIIDTPGHVD---FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKRYDVPCIAFINKLDRLGAD---P--- 119 (1043)
Q Consensus 50 ~~i~liDTPG~~~---~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~-~l~~~~~piilvlNKiDl~~~~---~--- 119 (1043)
..+.||||||+.+ ....+..+++.+|++|+|+|++.+....+...+. .+...++|+++|+||+|+.... .
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 4699999999875 4566778999999999999999887777776664 4555688999999999985321 1
Q ss_pred HH---HHHHHHHhhhhccccccccCCCCccceeeeeeeec--------------ccCCcchHHHHHHhhcc
Q psy11896 120 YR---VINQMRQKTSRWISNESLSEHKPIEYIRNIGISAH--------------IDSGKTTLTERILFYTG 173 (1043)
Q Consensus 120 ~~---~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~--------------~g~Gi~~L~~~l~~~l~ 173 (1043)
+. ..+.+...+...+....-...+.....++++|||+ +|.|+++|++.+...+.
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 01 11122221111111000000011223468999999 99999999999876553
No 371
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.95 E-value=5.4e-10 Score=115.14 Aligned_cols=152 Identities=17% Similarity=0.110 Sum_probs=108.1
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCee--EEEEeCCCCcchHHHHHHHhhhcCEEEEE
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN--INIIDTPGHVDFTVEVERALRVLDGAILV 80 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~--i~liDTPG~~~~~~~~~~~~~~aD~iIlV 80 (1043)
+|+.++ |..++||+|.........++.+..|.++.+...+.+.+++.. +.+|||||+.++...+..+++.+|++++|
T Consensus 30 ~kv~lv-G~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 108 (191)
T 1oix_A 30 FKVVLI-GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLV 108 (191)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEE
T ss_pred eEEEEE-CcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEE
Confidence 677788 999999999988877777777777878877777788887764 56799999998877778888999999999
Q ss_pred EeCCCCCchhHHH-HHHHHH---hcCCCEEEEEecCCCCCC-C-HHHHHHHHHHhhhhccccccccCCCCccceeeeeee
Q psy11896 81 LCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRLGA-D-PYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154 (1043)
Q Consensus 81 vDa~~~~~~~~~~-~~~~l~---~~~~piilvlNKiDl~~~-~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iS 154 (1043)
+|..+........ .+..+. ..+.|+++++||+|+... . .......+... .. ..++.+|
T Consensus 109 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-------------~~---~~~ld~S 172 (191)
T 1oix_A 109 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-------------NG---LSFIETS 172 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-------------TT---CEEEECC
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-------------cC---CEEEEEe
Confidence 9987533222211 222222 236789999999998532 1 11111222211 11 2456699
Q ss_pred ecccCCcchHHHHHHhh
Q psy11896 155 AHIDSGKTTLTERILFY 171 (1043)
Q Consensus 155 a~~g~Gi~~L~~~l~~~ 171 (1043)
|+++.|++++++.+...
T Consensus 173 ald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 173 ALDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999988653
No 372
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.92 E-value=5.8e-10 Score=114.67 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=76.8
Q ss_pred CccceeeeeecccccccCCccccCCChhh---hhhcCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhh----c
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMEL---ERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV----L 74 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~---e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~----a 74 (1043)
.+|+.++ |..++||+|.........+.. ...+++|.+. .+..+.+|||||+.++...+..+++. +
T Consensus 48 ~~~i~vv-G~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 48 QPSIIIA-GPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3577777 999999999977666655433 3444444432 56789999999998876666666655 8
Q ss_pred CEEEEEEeCC-CCCchhH--HHHHHHHH------hcCCCEEEEEecCCCCCC-CHHHHHHHHHHhhh
Q psy11896 75 DGAILVLCAV-GGVQSQT--LTVNRQMK------RYDVPCIAFINKLDRLGA-DPYRVINQMRQKTS 131 (1043)
Q Consensus 75 D~iIlVvDa~-~~~~~~~--~~~~~~l~------~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~~ 131 (1043)
|++|+|+|++ ....... ..+...+. ..++|+++|+||+|+... ...+..+.+.+.++
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~ 186 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ 186 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHH
Confidence 9999999998 3211111 11112221 137999999999999754 45555555555443
No 373
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.92 E-value=1.1e-09 Score=124.27 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=75.8
Q ss_pred CeeEEEEeCCCCcc-------------hHHHHHHHhhhcC-EEEEEEeCCCCCchhHHH-HHHHHHhcCCCEEEEEecCC
Q psy11896 49 DHNINIIDTPGHVD-------------FTVEVERALRVLD-GAILVLCAVGGVQSQTLT-VNRQMKRYDVPCIAFINKLD 113 (1043)
Q Consensus 49 ~~~i~liDTPG~~~-------------~~~~~~~~~~~aD-~iIlVvDa~~~~~~~~~~-~~~~l~~~~~piilvlNKiD 113 (1043)
..+++||||||+.+ +...+..+++.++ ++++|+|+..++..++.. +++.+...+.|+++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 46899999999742 4455666776554 566678887766666653 66666667899999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 114 RLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 114 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
+.+.... ..+.+... . ......+.+++++||++|.|+++|++.+..
T Consensus 209 l~~~~~~-~~~~~~~~---------~-~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 209 LMDEGTD-ARDVLENK---------L-LPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GSCTTCC-CHHHHTTC---------S-SCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccCcchh-HHHHHhCC---------c-ccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9753221 11111111 0 011234567899999999999999998875
No 374
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=123.09 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=39.1
Q ss_pred ecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.++.+.|+||||..+.. ......+|.+++|+|+..|...+... . .-...|.++|+||+|+.
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCC
Confidence 467899999999964322 22357899999999998764322111 1 12357999999999985
No 375
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.91 E-value=3e-10 Score=122.84 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=28.9
Q ss_pred hcCeEEEEEeCCCC--cchHHHHHH-HHH----HhcCCCeEEEEeccCCC
Q psy11896 290 VLDGAILVLCAVGG--VQSQTLTVN-RQM----KRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 290 ~~D~~ilVvda~~g--~~~~t~~~~-~~~----~~~~~p~ivviNKiD~~ 332 (1043)
.+|++|+|+|+.+. ........| ..+ ...++|+++|.||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 58999999999875 333322222 222 23579999999999975
No 376
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.89 E-value=1.1e-09 Score=118.81 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=81.7
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchHH---HHHHHhh------
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV---EVERALR------ 72 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~---~~~~~~~------ 72 (1043)
+|+.++ |..++||+|...+...... .....+++|+......+.+++..++||||||+.++.. .....+.
T Consensus 37 ~~I~lv-G~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~ 115 (262)
T 3def_A 37 MTVLVL-GKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNR 115 (262)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTC
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcC
Confidence 577777 9999999999766665543 4566788999999889999999999999999986532 2222222
Q ss_pred hcCEEEEEEeCCC-CCchhHHHHHHHHHhc-----CCCEEEEEecCCCC
Q psy11896 73 VLDGAILVLCAVG-GVQSQTLTVNRQMKRY-----DVPCIAFINKLDRL 115 (1043)
Q Consensus 73 ~aD~iIlVvDa~~-~~~~~~~~~~~~l~~~-----~~piilvlNKiDl~ 115 (1043)
.+|++++|+|... .....+...+..+... ..|+++|+||+|+.
T Consensus 116 ~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 116 TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 7899999988764 3444455555555432 24899999999985
No 377
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.88 E-value=4.3e-09 Score=119.75 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=52.6
Q ss_pred CeeEEEEcCCCCCCc-------------hHHHHHHhHhcCeEEEEEeCCC-C-cchHHHHHHHHHHhcCCCeEEEEeccC
Q psy11896 266 DHNINIIDTPGHVDF-------------TVEVERALRVLDGAILVLCAVG-G-VQSQTLTVNRQMKRYDVPCIAFINKLD 330 (1043)
Q Consensus 266 ~~~i~liDtPG~~df-------------~~e~~~~l~~~D~~ilVvda~~-g-~~~~t~~~~~~~~~~~~p~ivviNKiD 330 (1043)
...+.||||||..++ ...+..+++.+|++|+|+|+.. . .......+++.+...+.|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 568999999998887 4556778899999999998753 2 233345556666667889999999999
Q ss_pred CCC
Q psy11896 331 RLG 333 (1043)
Q Consensus 331 ~~~ 333 (1043)
+..
T Consensus 215 l~~ 217 (360)
T 3t34_A 215 LMD 217 (360)
T ss_dssp GCC
T ss_pred cCC
Confidence 874
No 378
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.88 E-value=4.4e-09 Score=114.63 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=82.0
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecCeeEEEEeCCCCcchH---HH----HHHH--hh
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT---VE----VERA--LR 72 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~---~~----~~~~--~~ 72 (1043)
+|+.++ |..++||+|...+...+.. .....+++|++.....+..++..+.||||||+.++. .. +..+ .+
T Consensus 40 ~~I~vv-G~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~ 118 (270)
T 1h65_A 40 LTILVM-GKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDK 118 (270)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTC
T ss_pred eEEEEE-CCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcC
Confidence 567777 9999999998666555443 345678899988888888899999999999997643 22 2222 23
Q ss_pred hcCEEEEEEeCCC-CCchhHHHHHHHHHhc-C----CCEEEEEecCCCCC
Q psy11896 73 VLDGAILVLCAVG-GVQSQTLTVNRQMKRY-D----VPCIAFINKLDRLG 116 (1043)
Q Consensus 73 ~aD~iIlVvDa~~-~~~~~~~~~~~~l~~~-~----~piilvlNKiDl~~ 116 (1043)
.+|++++|+|++. .....+...+..+... + +|+++|+||+|+..
T Consensus 119 ~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 119 TIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp EECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred CCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 6999999988764 3444555555555432 3 69999999999864
No 379
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.86 E-value=9.4e-09 Score=115.37 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=57.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------- 266 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------- 266 (1043)
.+|+++|.+|+|||||+++|+..... ....+++|+......+.+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~---------------------v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~ 61 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE---------------------AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPE 61 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC---------------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc---------------------ccCCCCceECceEEEEecCCcccceeeeeeccc
Confidence 46999999999999999999853311 11233344444333344433
Q ss_pred ----eeEEEEcCCCCCCchHH-------HHHHhHhcCeEEEEEeCCC
Q psy11896 267 ----HNINIIDTPGHVDFTVE-------VERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 267 ----~~i~liDtPG~~df~~e-------~~~~l~~~D~~ilVvda~~ 302 (1043)
..+.+|||||+.++..+ ....++.+|++++|+|+.+
T Consensus 62 ~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 62 RILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 57999999999987533 4566899999999999985
No 380
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.86 E-value=2.9e-09 Score=129.70 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=86.0
Q ss_pred CCccccceEEEEec-CeeEEEEeCCCCcc-------------hHHHHHHHh-hhcCEEEEEEeCCCCCchhHH-HHHHHH
Q psy11896 35 GITIQSAATYTLWK-DHNINIIDTPGHVD-------------FTVEVERAL-RVLDGAILVLCAVGGVQSQTL-TVNRQM 98 (1043)
Q Consensus 35 G~T~~~~~~~~~~~-~~~i~liDTPG~~~-------------~~~~~~~~~-~~aD~iIlVvDa~~~~~~~~~-~~~~~l 98 (1043)
|++.++....+... ..+++|+||||+.. +...+..++ ..+|++++|+|++.++..++. .++..+
T Consensus 134 ~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L 213 (772)
T 3zvr_A 134 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV 213 (772)
T ss_dssp CCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH
T ss_pred cccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH
Confidence 34444444444443 34799999999864 223344455 478999999999988877776 678888
Q ss_pred HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 99 KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 99 ~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
...++|+++|+||+|+.+.... . ..+.. .. + ......+.+++++||++|.|+++|.+.+..
T Consensus 214 ~~~g~pvIlVlNKiDlv~~~~~-~-~~il~--~~------~-~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 214 DPQGQRTIGVITKLDLMDEGTD-A-RDVLE--NK------L-LPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CTTCSSEEEEEECTTSSCTTCC-S-HHHHT--TC------S-SCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HhcCCCEEEEEeCcccCCcchh-h-HHHHH--HH------h-hhhhccCCceEEecccccccchhHHHHHHH
Confidence 8889999999999999754321 1 11111 00 0 001235678999999999999999999886
No 381
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.86 E-value=2.1e-09 Score=116.53 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=46.0
Q ss_pred CeeEEEEcCCCCCCchHH------HHHHhHhcCeEEEEEeCCCCcchHHHHH-----HHHHHhcCCCeEEEEeccCCCC
Q psy11896 266 DHNINIIDTPGHVDFTVE------VERALRVLDGAILVLCAVGGVQSQTLTV-----NRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e------~~~~l~~~D~~ilVvda~~g~~~~t~~~-----~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
++.+.||||||..++... +..++.. +.+++++|+........... .......++|.++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 468999999998765322 2334555 88899999876655444321 1223445899999999999864
No 382
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.86 E-value=6.4e-10 Score=130.37 Aligned_cols=218 Identities=19% Similarity=0.166 Sum_probs=114.0
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCce-eeeeecCCccccccccch-hhhhhcCceEeeee-------------EE
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRIS-EMHEVRGKDNVGAVMDSM-ELERQRGITIQSAA-------------TY 261 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~-~~~~v~~~~~~~~~~d~~-~~e~~~giTi~~~~-------------~~ 261 (1043)
.+.++|+++|++|+||||++++|..+..... ++.-++.........+++ ......++.+.... ..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999985432111 111111100000011111 11122334332210 01
Q ss_pred EEecCeeEEEEcCCCCCC----chHHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCC
Q psy11896 262 TLWKDHNINIIDTPGHVD----FTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGA 334 (1043)
Q Consensus 262 ~~~~~~~i~liDtPG~~d----f~~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~ 334 (1043)
+.++++.+.||||||... +..++.... ..+|.+++|+|+..|.. ....++.... .+|+ .+|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc-
Confidence 124788999999999764 333333332 27899999999998854 2333333322 2785 89999999873
Q ss_pred CHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEee-cCCCCCeeEeecCchhHHHHHHHHHHHHHHHHhcC
Q psy11896 335 DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF-EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 413 (1043)
Q Consensus 335 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~-~~~~g~~~~~~~i~~~~~~~~~~~r~~l~e~l~e~ 413 (1043)
.....+. +.+.++..+.. +..+ ..+. |+.......| +.-.|. .....|+|.+.+.
T Consensus 255 ~~g~~l~-~~~~~g~PI~f--ig~g--e~~~---dl~~f~~~~~vsal~G~----------------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGALS-AVAATKSPIIF--IGTG--EHID---DFEPFKTQPFISKLLGM----------------GDIEGLIDKVNEL 310 (504)
T ss_dssp CCTHHHH-HHHHHCCCEEE--EECS--SSTT---CEECCTHHHHHHCCCTT----------------TTTTTTHHHHTTT
T ss_pred chHHHHH-HHHHhCCCeEE--eccc--cchh---hhhccCcceeeehhcCC----------------CcHHHHHHHHHHH
Confidence 2223333 55666643321 1111 1111 1111000000 000010 0024566666654
Q ss_pred ----ChHHHHHHhccCCCCHHHHHHHHHHhhhcC
Q psy11896 414 ----DEILGEMFLEEKSISEDDIKKAIRRSTLTR 443 (1043)
Q Consensus 414 ----dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~ 443 (1043)
+++++++|+++ +++.+++...+++....+
T Consensus 311 ~~~~~~~l~~k~~~g-~~~l~d~~~~l~~~~~~G 343 (504)
T 2j37_W 311 KLDDNEALIEKLKHG-QFTLRDMYEQFQNIMKMG 343 (504)
T ss_dssp TTCCCTTTTTSCTTS-GGGGCCCHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 66888888887 677777777777654444
No 383
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.81 E-value=9.5e-09 Score=117.96 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=104.6
Q ss_pred ceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC-eeEEEEeCCCCcc-------hHHHHHHHhhhcCE
Q psy11896 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHVD-------FTVEVERALRVLDG 76 (1043)
Q Consensus 5 ~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-~~i~liDTPG~~~-------~~~~~~~~~~~aD~ 76 (1043)
+.|+ |..++||+|...............+.+|..++...+.+++ ..++++||||+.+ +.......+..+|.
T Consensus 160 VgLV-G~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 160 VGLV-GYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp EEEE-CCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEE-CCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 3455 9999999998655554444445667889999888888876 7899999999853 33344556678999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHh-----cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 77 AILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~~~~~~l~~-----~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
+++|+|++.....+.....+++.. ...|.++++||+|+... ..++.+.+.+. . . ..+++
T Consensus 239 lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~----~------~---g~~vi 302 (416)
T 1udx_A 239 LLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALA----R------E---GLAVL 302 (416)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHH----T------T---TSCEE
T ss_pred hhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHH----h------c---CCeEE
Confidence 999999961111111111222221 36899999999998752 33344433321 0 0 13578
Q ss_pred eeeecccCCcchHHHHHHhhccc
Q psy11896 152 GISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.+||+++.|+++|++.+...+..
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEECCCccCHHHHHHHHHHHHHh
Confidence 99999999999999999887764
No 384
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.79 E-value=6.2e-09 Score=116.62 Aligned_cols=109 Identities=21% Similarity=0.286 Sum_probs=71.6
Q ss_pred hhhcCEEEEEEeCCCCCchhHHHHHHHH---HhcCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccc
Q psy11896 71 LRVLDGAILVLCAVGGVQSQTLTVNRQM---KRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEY 147 (1043)
Q Consensus 71 ~~~aD~iIlVvDa~~~~~~~~~~~~~~l---~~~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 147 (1043)
+.++|.+++| |+..+ ......+-+++ ...++|.++|+||+|+.+.......+.+...+. ...
T Consensus 128 ~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~------------~~G- 192 (358)
T 2rcn_A 128 AANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR------------NIG- 192 (358)
T ss_dssp EECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH------------TTT-
T ss_pred HhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH------------hCC-
Confidence 5789999976 55543 33333333333 457899999999999975321111222222221 112
Q ss_pred eeeeeeeecccCCcchHHHHHHhhccccccccccccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhccc
Q psy11896 148 IRNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 223 (1043)
Q Consensus 148 ~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~ 223 (1043)
.+++.+||.++.|+++|...+. + ..++++|++|+|||||++.|+...
T Consensus 193 ~~v~~~Sa~~~~gl~~L~~~~~---G--------------------------~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 193 YRVLMVSSHTQDGLKPLEEALT---G--------------------------RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp CCEEECBTTTTBTHHHHHHHHT---T--------------------------SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CcEEEEecCCCcCHHHHHHhcC---C--------------------------CEEEEECCCCccHHHHHHHHhccc
Confidence 2578999999999988776431 1 248999999999999999998543
No 385
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.79 E-value=5.6e-09 Score=117.57 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=89.8
Q ss_pred cCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCc--------hhH---HHHHHHHHh--
Q psy11896 34 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ--------SQT---LTVNRQMKR-- 100 (1043)
Q Consensus 34 ~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~--------~~~---~~~~~~l~~-- 100 (1043)
+..|+......+..++..+.+|||+|+..+...|..++++++++|||+|.++.-+ ..- ...+..+..
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 3456666677788889999999999999999999999999999999999986211 111 222333322
Q ss_pred --cCCCEEEEEecCCCCC------------------CCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 101 --YDVPCIAFINKLDRLG------------------ADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 101 --~~~piilvlNKiDl~~------------------~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
.++|+|||+||+|+.. .+.++..+.+...+.. +..........++.+||+++.|
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~------l~~~~~~~~~~~~etSA~~~~n 330 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFED------LNKRKDTKEIYTHFTCATDTKN 330 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHT------TCSCTTTCCEEEEECCTTCHHH
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHH------hhcccCCCceEEEEEECcCchh
Confidence 3689999999999841 1223333333332221 1110001124567899999999
Q ss_pred cchHHHHHHhhc
Q psy11896 161 KTTLTERILFYT 172 (1043)
Q Consensus 161 i~~L~~~l~~~l 172 (1043)
++++++.+...+
T Consensus 331 V~~vF~~v~~~i 342 (353)
T 1cip_A 331 VQFVFDAVTDVI 342 (353)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 386
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=5e-09 Score=118.91 Aligned_cols=153 Identities=13% Similarity=0.140 Sum_probs=72.2
Q ss_pred ccceeeeeecccccccCCcccc-CCChhhhh--------hcCCccccceEEEEecCe--eEEEEeCCCCcc-------hH
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAV-MDSMELER--------QRGITIQSAATYTLWKDH--NINIIDTPGHVD-------FT 64 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~-~d~~~~e~--------~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~-------~~ 64 (1043)
||+.++ |..++||+|...+.. .+.+.... .++++++.....+..++. .+++|||||+.+ +.
T Consensus 38 ~~I~vv-G~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 38 FTLMVV-GESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp ECEEEC-CCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred EEEEEE-cCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 677777 999999999866633 23332222 133333333333444444 799999999943 22
Q ss_pred HHH-------HHHhhhc-------------CEEEEEEeC-CCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCHHHHH
Q psy11896 65 VEV-------ERALRVL-------------DGAILVLCA-VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVI 123 (1043)
Q Consensus 65 ~~~-------~~~~~~a-------------D~iIlVvDa-~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~~~~~ 123 (1043)
..+ ..+++.+ |++++++|. ..++...+..+...+. .++|+|+|+||+|+... .+.
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~--~ev- 192 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTL--KER- 192 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCH--HHH-
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCH--HHH-
Confidence 112 1455443 467888876 4566666665555553 57899999999998742 111
Q ss_pred HHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHh
Q psy11896 124 NQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILF 170 (1043)
Q Consensus 124 ~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~ 170 (1043)
..+.+.+..+... . ..+++++||++|.| ++.+..+..
T Consensus 193 ~~~k~~i~~~~~~------~---~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 193 ERLKKRILDEIEE------H---NIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp HHHHHHHHHHTTC------C----CCSCCCC----------CHHHHH
T ss_pred HHHHHHHHHHHHH------C---CCCEEeCCCcCCCc-chhHHHHHH
Confidence 1111122111111 1 13568899999998 665555443
No 387
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.74 E-value=1.2e-07 Score=107.03 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=56.1
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEE----------------
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTL---------------- 263 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---------------- 263 (1043)
.+|+++|++|+|||||+++|+.....+.. .+++|+........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~---------------------~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~ 60 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN---------------------YPFATIDKNVGVVPLEDERLYALQRTFAKG 60 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS---------------------CCGGGGSTTEEEEECCCHHHHHHHHHHCBT
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC---------------------CCCceeccceeeEecChHHHHHHHHHhccc
Confidence 46999999999999999999855321111 11112222221111
Q ss_pred -----ecCeeEEEEcCCCCCCc-------hHHHHHHhHhcCeEEEEEeCCC
Q psy11896 264 -----WKDHNINIIDTPGHVDF-------TVEVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 264 -----~~~~~i~liDtPG~~df-------~~e~~~~l~~~D~~ilVvda~~ 302 (1043)
+.+..+.+|||||..++ .......++.+|++++|+|+.+
T Consensus 61 ~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp TBCCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 23467999999998775 2456677899999999999985
No 388
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.71 E-value=1.7e-08 Score=113.20 Aligned_cols=84 Identities=15% Similarity=0.056 Sum_probs=65.6
Q ss_pred CCccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC-----------------eeEEEEeCCCCcch
Q psy11896 1 MEHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-----------------HNINIIDTPGHVDF 63 (1043)
Q Consensus 1 ~~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~~ 63 (1043)
|.+|+.++ |.+++||+|...+.+.........|++|++++.+.+.+.+ ..+.||||||+.++
T Consensus 1 m~~kI~IV-G~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 1 MGFKCGIV-GLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 55788888 9999999998777776666677889999999998888766 57999999999875
Q ss_pred H-------HHHHHHhhhcCEEEEEEeCCC
Q psy11896 64 T-------VEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 64 ~-------~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
. ..+..+++.+|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 4 345677899999999999985
No 389
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.70 E-value=1.2e-08 Score=115.24 Aligned_cols=132 Identities=11% Similarity=-0.009 Sum_probs=81.2
Q ss_pred CCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCC--------chh---HHHHHHHHHh---
Q psy11896 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV--------QSQ---TLTVNRQMKR--- 100 (1043)
Q Consensus 35 G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~--------~~~---~~~~~~~l~~--- 100 (1043)
..|+......+..++..+.+|||||+..+...|..++++++++|||+|.++.- ... ....+..+..
T Consensus 186 ~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 34666666778888999999999999999999999999999999999998621 111 1222333322
Q ss_pred -cCCCEEEEEecCCCCC-------------------CCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 101 -YDVPCIAFINKLDRLG-------------------ADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 101 -~~~piilvlNKiDl~~-------------------~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
.++|+|+++||+|+.. .+.++..+.+...+.. +..........++.+||+++.|
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~------l~~~~~~~~~~~~~tSA~d~~n 339 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRG------KRRDQQQRPLYHHFTTAINTEN 339 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHT------TCSSCC--CCEEEECCTTCHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHH------hhcccCCCceEEEEEecCCchh
Confidence 3689999999999841 1222233333222211 1110001123567899999999
Q ss_pred cchHHHHHHhhc
Q psy11896 161 KTTLTERILFYT 172 (1043)
Q Consensus 161 i~~L~~~l~~~l 172 (1043)
++++++.+...+
T Consensus 340 V~~vF~~v~~~i 351 (362)
T 1zcb_A 340 IRLVFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 390
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.69 E-value=8.6e-09 Score=117.27 Aligned_cols=106 Identities=14% Similarity=0.209 Sum_probs=70.7
Q ss_pred CeeEEEEeCCCCcch-------------HHHHHHHhhhcCEEEEEEeCCC-CCc-hhHHHHHHHHHhcCCCEEEEEecCC
Q psy11896 49 DHNINIIDTPGHVDF-------------TVEVERALRVLDGAILVLCAVG-GVQ-SQTLTVNRQMKRYDVPCIAFINKLD 113 (1043)
Q Consensus 49 ~~~i~liDTPG~~~~-------------~~~~~~~~~~aD~iIlVvDa~~-~~~-~~~~~~~~~l~~~~~piilvlNKiD 113 (1043)
...+.||||||+.++ ...+..+++.+|++|+|+|+.. ... .....++..+...++|+++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999999875 6778889999999999998753 222 3334555666667889999999999
Q ss_pred CCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHH
Q psy11896 114 RLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERI 168 (1043)
Q Consensus 114 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l 168 (1043)
+...... ..+.+.. ...... .+.+++|+.++.++++.+...
T Consensus 215 l~~~~~~-~~~~~~~----------~~~~~~---~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 215 LMDKGTD-AVEILEG----------RSFKLK---YPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp GCCTTCC-SHHHHTT----------SSSCCS---SCCEEECCCCHHHHHTTCCHH
T ss_pred cCCCccc-HHHHHcC----------cccccc---CCeEEEEECChHHhccCCCHH
Confidence 8753211 1121211 111122 244678999988887765543
No 391
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.62 E-value=1.6e-07 Score=108.57 Aligned_cols=219 Identities=17% Similarity=0.195 Sum_probs=116.4
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCc-eeeeeecCCcccc-ccccchh-hhhhcCceEeeee-------------EE
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRI-SEMHEVRGKDNVG-AVMDSME-LERQRGITIQSAA-------------TY 261 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~-~~~~~v~~~~~~~-~~~d~~~-~e~~~giTi~~~~-------------~~ 261 (1043)
..+.|+++|+.|+||||++..|..+.... ....-+-+.+++. ...+... .....|+.+.... ..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998554322 1111111111100 0011100 1122333332211 01
Q ss_pred EEecCeeEEEEcCCCCCCchHHHHHH------hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCC
Q psy11896 262 TLWKDHNINIIDTPGHVDFTVEVERA------LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGA 334 (1043)
Q Consensus 262 ~~~~~~~i~liDtPG~~df~~e~~~~------l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 334 (1043)
+.++++.+.||||||...+...+..+ +..+|.+++|+|+..|.. .....+.. ..+++ .-+|+||+|...
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f-~~~l~i~gvVlnK~D~~~- 254 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAF-NEALPLTGVVLTKVDGDA- 254 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHH-HHHSCCCCEEEECTTSSS-
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHH-hccCCCeEEEEecCCCCc-
Confidence 12357899999999987765554443 336789999999987732 22222222 22455 347999999863
Q ss_pred CHHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHHHHHH--HHHHHHHHh-
Q psy11896 335 DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESK--RQELIEHVA- 411 (1043)
Q Consensus 335 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~--r~~l~e~l~- 411 (1043)
... ....+...++..+.++ +.+.....+ ..|+ |..+...+... ...|+|.+.
T Consensus 255 ~~g-~~l~i~~~~~~Pi~~i----G~ge~v~dl--------~~f~------------p~~~a~~l~g~gD~~~Lie~a~~ 309 (433)
T 2xxa_A 255 RGG-AALSIRHITGKPIKFL----GVGEKTEAL--------EPFH------------PDRIASRILGMGDVLSLIEDIES 309 (433)
T ss_dssp CCT-HHHHHHHHHCCCEEEE----ECSSSSSCE--------EECC------------HHHHHHHHHCCCTTHHHHHHHHH
T ss_pred cHH-HHHHHHHHHCCCeEEE----ecCCCchhh--------hhcC------------hHHHHHHHhCccchHHHHHHHHH
Confidence 222 3335666666443321 111111110 0111 12222222111 222333322
Q ss_pred ----cCChHHHHHHhccCCCCHHHHHHHHHHhhhcCcc
Q psy11896 412 ----EGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKF 445 (1043)
Q Consensus 412 ----e~dd~l~~~~l~~~~~~~~~l~~~l~~~~~~~~~ 445 (1043)
+.+++++++|+++..++.+++...+++....+.+
T Consensus 310 ~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~ 347 (433)
T 2xxa_A 310 KVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGM 347 (433)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSC
T ss_pred hhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 3367889999987789999999999887655544
No 392
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.57 E-value=9.9e-09 Score=116.37 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=72.7
Q ss_pred ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHH
Q psy11896 47 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQ 125 (1043)
Q Consensus 47 ~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~ 125 (1043)
..++.+.||||||...... ..+..+|++++|+|+..+...+... .. ...+|.++|+||+|+... ......+.
T Consensus 169 ~~~~~~iiiDTpGi~~~~~---~~~~~aD~vl~V~d~~~~~~~~~l~--~~--~~~~p~ivVlNK~Dl~~~~~~~~~~~~ 241 (355)
T 3p32_A 169 AAGFDVILIETVGVGQSEV---AVANMVDTFVLLTLARTGDQLQGIK--KG--VLELADIVVVNKADGEHHKEARLAARE 241 (355)
T ss_dssp HTTCCEEEEEECSCSSHHH---HHHTTCSEEEEEEESSTTCTTTTCC--TT--SGGGCSEEEEECCCGGGHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCCcHHH---HHHHhCCEEEEEECCCCCccHHHHH--Hh--HhhcCCEEEEECCCCcChhHHHHHHHH
Confidence 3578899999999765332 3458999999999987543221111 11 124699999999998642 12222333
Q ss_pred HHHhhhhccccccccCCCCcc-ceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 126 MRQKTSRWISNESLSEHKPIE-YIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 126 l~~~~~~~~~~~~l~~~~~~~-~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
+.+.+..+ .. .... ..+++++||++|.|+++|++.+...+..
T Consensus 242 l~~~l~~~------~~-~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 242 LSAAIRLI------YP-REALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHH------ST-TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHhhc------cc-cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 33332110 00 0011 2478999999999999999999887653
No 393
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.57 E-value=5.2e-08 Score=108.33 Aligned_cols=139 Identities=16% Similarity=0.068 Sum_probs=90.2
Q ss_pred cCCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCC--------Cchh---HHHHHHHHHh--
Q psy11896 34 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG--------VQSQ---TLTVNRQMKR-- 100 (1043)
Q Consensus 34 ~G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~--------~~~~---~~~~~~~l~~-- 100 (1043)
+..|+......+..++.++.+|||+|++.+...|..++++++++|||+|.++. -... ....+..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 34577777788888899999999999999999999999999999999998720 1111 1222332222
Q ss_pred --cCCCEEEEEecCCCCC------------------CCHHHHHHHHHHhhhhccccccccCCCC----------ccceee
Q psy11896 101 --YDVPCIAFINKLDRLG------------------ADPYRVINQMRQKTSRWISNESLSEHKP----------IEYIRN 150 (1043)
Q Consensus 101 --~~~piilvlNKiDl~~------------------~~~~~~~~~l~~~~~~~~~~~~l~~~~~----------~~~~~i 150 (1043)
.++|+++++||+|+.. .+.++..+.+.+.+...+....+..... -....+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 4689999999999842 1223333444444311111111111111 012345
Q ss_pred eeeeecccCCcchHHHHHHhhc
Q psy11896 151 IGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 151 i~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+||+...|++.+++.+....
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHH
Confidence 7899999999999998887654
No 394
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.55 E-value=5e-08 Score=116.57 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=82.4
Q ss_pred ccceeeeeecccccccCCccccCCCh---hhhhhcCCccccceE------------------------------------
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM---ELERQRGITIQSAAT------------------------------------ 43 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~---~~e~~~G~T~~~~~~------------------------------------ 43 (1043)
.++.++ |..++||+|...+.+.... ....+|++|+.....
T Consensus 66 ~~V~vv-G~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 66 PMVLVA-GQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CEEEEE-EBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred cEEEEE-CCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 456666 9999999998766665554 245566665421110
Q ss_pred EEEecC---eeEEEEeCCCCcc-----------hHHHHHHHhhhcCEEEEEEeCCC-CCchhHHHHHHHHHhcCCCEEEE
Q psy11896 44 YTLWKD---HNINIIDTPGHVD-----------FTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDVPCIAF 108 (1043)
Q Consensus 44 ~~~~~~---~~i~liDTPG~~~-----------~~~~~~~~~~~aD~iIlVvDa~~-~~~~~~~~~~~~l~~~~~piilv 108 (1043)
.+.+.+ .+++||||||+.+ |...+..+++.+|++|+|+|++. +....+..++..+...+.|+++|
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilV 224 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVV 224 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEE
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 000111 3699999999975 66778889999999999999987 46777777778787778899999
Q ss_pred EecCCCCC
Q psy11896 109 INKLDRLG 116 (1043)
Q Consensus 109 lNKiDl~~ 116 (1043)
+||+|+..
T Consensus 225 lNK~Dl~~ 232 (550)
T 2qpt_A 225 LNKADMVE 232 (550)
T ss_dssp EECGGGSC
T ss_pred EECCCccC
Confidence 99999974
No 395
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.54 E-value=3.6e-08 Score=110.64 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=39.4
Q ss_pred ecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+.+..+.||||||..+-.. .....+|.+++|+|+..+...+. +.. ....+|.++++||+|+.
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~--~i~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKK--GIFELADMIAVNKADDG 206 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCT--THHHHCSEEEEECCSTT
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHH--HHhccccEEEEEchhcc
Confidence 4688999999999765322 22478999999999865422110 000 01134778899999975
No 396
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.52 E-value=1e-07 Score=105.60 Aligned_cols=131 Identities=10% Similarity=-0.007 Sum_probs=88.8
Q ss_pred CCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCC-------CCCch-h---HHHHHHHHHh---
Q psy11896 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV-------GGVQS-Q---TLTVNRQMKR--- 100 (1043)
Q Consensus 35 G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~-------~~~~~-~---~~~~~~~l~~--- 100 (1043)
..|+......+..++.++.+|||+|++.+...|..++++++++|||+|.+ +.... . ....+..+..
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 45666677788889999999999999999999999999999999999765 21111 1 1222333322
Q ss_pred -cCCCEEEEEecCCCCC-------------------CCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCC
Q psy11896 101 -YDVPCIAFINKLDRLG-------------------ADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSG 160 (1043)
Q Consensus 101 -~~~piilvlNKiDl~~-------------------~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~G 160 (1043)
.++|+++++||+|+.. .+.++..+.+...+... ..... .....+.+||+++.|
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~------~~~~~-~~i~~~~TsA~d~~n 304 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDL------NPDSD-KIIYSHFTCATDTEN 304 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSS------CTTTT-SCEEEEECCTTCHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhh------ccccc-CCcEEEEEEeecCHH
Confidence 3689999999999742 13333444444433211 11111 123456799999999
Q ss_pred cchHHHHHHhhc
Q psy11896 161 KTTLTERILFYT 172 (1043)
Q Consensus 161 i~~L~~~l~~~l 172 (1043)
++.+++.+....
T Consensus 305 V~~vF~~v~~~I 316 (327)
T 3ohm_A 305 IRFVFAAVKDTI 316 (327)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 397
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.49 E-value=1.6e-07 Score=106.10 Aligned_cols=83 Identities=12% Similarity=0.013 Sum_probs=63.5
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEec---------------------CeeEEEEeCCCC
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK---------------------DHNINIIDTPGH 60 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~---------------------~~~i~liDTPG~ 60 (1043)
++|+.|+ |.+++||+|...............|++|++++.+..... +..+.||||||+
T Consensus 1 ~~~v~IV-G~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 1 MLAVGIV-GLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CCSEEEE-CCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 4678888 999999999865444332233456788999998877543 357999999999
Q ss_pred cc-------hHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 61 VD-------FTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 61 ~~-------~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
.+ +...+...++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 75 34567788999999999999985
No 398
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.47 E-value=4.8e-07 Score=103.95 Aligned_cols=217 Identities=18% Similarity=0.151 Sum_probs=102.7
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccc-ccccchh-hhhhcCceEeeee-------------EEEE
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVG-AVMDSME-LERQRGITIQSAA-------------TYTL 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~-~~~d~~~-~e~~~giTi~~~~-------------~~~~ 263 (1043)
.+.|+++|+.|+||||++..|............+.+.+.+. ...+... .....|+...... ..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 47799999999999999999974432111100010000000 0000000 0111232221110 0111
Q ss_pred ecCeeEEEEcCCCCCC------chHHHHHHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCC
Q psy11896 264 WKDHNINIIDTPGHVD------FTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 335 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~d------f~~e~~~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~ 335 (1043)
+.++.+.||||||... +..++....+ ..|.+++|+|+..|.. .....+...+.-.+..+++||+|.. +.
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~-a~ 253 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT-AK 253 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC-SC
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc-cc
Confidence 3478999999999644 3444443332 4589999999998643 2233333333335678999999987 34
Q ss_pred HHHHHHHHHHHhCCCceeeeeccccCCCeeEEEEcccceeEeecCCCCCeeEeecCchhHHHH------HHHHHHHHHHH
Q psy11896 336 PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE------AESKRQELIEH 409 (1043)
Q Consensus 336 ~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~i~~~~~~~------~~~~r~~l~e~ 409 (1043)
....+. +....+..+..+ +.|.+... .....|..+... +...++++.+.
T Consensus 254 ~G~als-~~~~~g~Pi~fi----g~Ge~v~d--------------------L~~f~p~~~~~~llg~gd~~~l~e~~~~~ 308 (433)
T 3kl4_A 254 GGGALS-AVVATGATIKFI----GTGEKIDE--------------------LETFNAKRFVSRILGMGDIESILEKVKGL 308 (433)
T ss_dssp HHHHHH-HHHHHTCEEEEE----ECCSSSSC--------------------EEECCHHHHHHHHHCSSHHHHHHHHHHHC
T ss_pred chHHHH-HHHHHCCCEEEE----ECCCChHh--------------------CccCCHHHHHHHhcCCchHHHHHHHHHHh
Confidence 433333 334444332211 11111111 112234555553 34455555555
Q ss_pred HhcCC-hHHHHHHhccC-CCCHHHHHHHHHHhhhcC
Q psy11896 410 VAEGD-EILGEMFLEEK-SISEDDIKKAIRRSTLTR 443 (1043)
Q Consensus 410 l~e~d-d~l~~~~l~~~-~~~~~~l~~~l~~~~~~~ 443 (1043)
+.+.+ ++++++|.++. .++.+++...+++-...+
T Consensus 309 ~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg 344 (433)
T 3kl4_A 309 EEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMG 344 (433)
T ss_dssp -------------------CCHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 54444 67889998886 899999988887654444
No 399
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.45 E-value=6.6e-08 Score=102.02 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=64.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCce---Eeee-e------------EE
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGIT---IQSA-A------------TY 261 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giT---i~~~-~------------~~ 261 (1043)
+.++|+++|+.|+|||||+++|+...........+.... ....|....+. .|.. +... . ..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~--~~~~d~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV--IAKFDAERMEK-HGAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEET--TTHHHHHHHHT-TTCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCC--CCCccHHHHHh-cCCcEEEecCCceEeccHHHHHHHHHH
Confidence 468899999999999999999996543222222221110 00111111111 0110 0000 0 00
Q ss_pred EEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 262 TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 262 ~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
+...+..+.++||+|...-... .-...+..+.++|+..+...... .....+.|.++|+||+|+.
T Consensus 114 l~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLA 177 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGH
T ss_pred HhcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccC
Confidence 0112347899999995321100 01234667788887544322211 1122468999999999974
No 400
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.1e-07 Score=105.10 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=86.2
Q ss_pred cceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcc-------hHHHHHHHhhhcCE
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD-------FTVEVERALRVLDG 76 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~-------~~~~~~~~~~~aD~ 76 (1043)
.+-|| |-+.+||+|.+-+.+.........|++|++++.+.+.+.+.++.|+||||+.+ ....+...++.||+
T Consensus 74 ~V~iv-G~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 74 SVGFV-GFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEE-CCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred eEEEE-CCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 35567 99999999997776666666788899999999999999999999999999863 45667889999999
Q ss_pred EEEEEeCCCCCchhHHHHHHHHHh-----cCCCEEEEEecCCCC
Q psy11896 77 AILVLCAVGGVQSQTLTVNRQMKR-----YDVPCIAFINKLDRL 115 (1043)
Q Consensus 77 iIlVvDa~~~~~~~~~~~~~~l~~-----~~~piilvlNKiDl~ 115 (1043)
+++|+|++++.. ....+...+.. ..+|.++++||+|..
T Consensus 153 il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 153 LFIILDVNKPLH-HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEETTSHHH-HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cccccccCccHH-HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999986432 22222233332 356889999999964
No 401
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.41 E-value=4.1e-07 Score=92.43 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=64.4
Q ss_pred CCCCcchHHHHHHHhhhcCEEEEEEeCCCCCc-hhHHHH---HHHHHh----cCCCEEEEEecC-CCCCCCHHHHHHHHH
Q psy11896 57 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTV---NRQMKR----YDVPCIAFINKL-DRLGADPYRVINQMR 127 (1043)
Q Consensus 57 TPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~-~~~~~~---~~~l~~----~~~piilvlNKi-Dl~~~~~~~~~~~l~ 127 (1043)
..|+..+...|..|++++|++|||||+++.-. ....++ ...+.+ .+.|++|+.||. |++.+-.. .++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~---~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCH---HHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCH---HHHH
Confidence 34888999999999999999999999986422 222222 222321 478999999995 77654322 3444
Q ss_pred HhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 128 QKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.++ +... . ..+.|.++||.+|+|+.+-++++...+
T Consensus 186 e~L~-------L~~l-~-R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 186 HELH-------LNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp HHTT-------GGGG-C-SCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred HHcC-------CcCC-C-CCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 4442 2221 1 346889999999999888777776544
No 402
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.40 E-value=2.7e-07 Score=104.99 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=61.1
Q ss_pred CCccccceEEEEecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC----------CCchh-HHHHHHHHHh---
Q psy11896 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----------GVQSQ-TLTVNRQMKR--- 100 (1043)
Q Consensus 35 G~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~----------~~~~~-~~~~~~~l~~--- 100 (1043)
..|+......+..++.++.+|||+|+.++...|..++++++++|||+|.++ .-... ....+..+..
T Consensus 202 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred cceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 345556666778889999999999999999999999999999999999985 11111 1222333322
Q ss_pred -cCCCEEEEEecCCCC
Q psy11896 101 -YDVPCIAFINKLDRL 115 (1043)
Q Consensus 101 -~~~piilvlNKiDl~ 115 (1043)
.++|++||+||+|+.
T Consensus 282 ~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 282 LRTISVILFLNKQDLL 297 (402)
T ss_dssp CSSCCEEEEEECHHHH
T ss_pred CCCCeEEEEEEChhhh
Confidence 367999999999973
No 403
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.39 E-value=4.8e-07 Score=99.88 Aligned_cols=120 Identities=16% Similarity=0.249 Sum_probs=60.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeec-CCccccccccchhhhhhcCceEeeeeEEEEec--CeeEEEEcCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVR-GKDNVGAVMDSMELERQRGITIQSAATYTLWK--DHNINIIDTPG 276 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~-~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDtPG 276 (1043)
.+|+++|+.|+|||||+++|+....... .+ +. .+.. . ..++........+... ...++++||||
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~-~g-i~~~g~~---------~--~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g 85 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPE-RV-ISGAAEK---------I--ERTVQIEASTVEIEERGVKLRLTVVDTPG 85 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-------------------------------------CEEEEC---CCEEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCC-CC-cccCCcc---------c--CCcceEeeEEEEecCCCcccCcchhhhhh
Confidence 5689999999999999999874311111 01 10 0000 0 0011111111111111 35789999999
Q ss_pred C-------CCchHHHH-------HHhHhc-------------CeEEEEEeCC-CCcchHHHHHHHHHHhcCCCeEEEEec
Q psy11896 277 H-------VDFTVEVE-------RALRVL-------------DGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINK 328 (1043)
Q Consensus 277 ~-------~df~~e~~-------~~l~~~-------------D~~ilVvda~-~g~~~~t~~~~~~~~~~~~p~ivviNK 328 (1043)
+ ..|...+. ..++.+ +.++++++.. .|+.......++.+. .+.|+++|+||
T Consensus 86 ~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K 164 (301)
T 2qnr_A 86 YGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAK 164 (301)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECC
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEe
Confidence 8 33332222 333332 2356666654 457777765555543 46799999999
Q ss_pred cCCCC
Q psy11896 329 LDRLG 333 (1043)
Q Consensus 329 iD~~~ 333 (1043)
.|+..
T Consensus 165 ~Dl~~ 169 (301)
T 2qnr_A 165 ADTLT 169 (301)
T ss_dssp GGGSC
T ss_pred CCCCC
Confidence 99863
No 404
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.39 E-value=5.3e-08 Score=109.88 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=66.9
Q ss_pred ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCC-HHHHHHH
Q psy11896 47 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQ 125 (1043)
Q Consensus 47 ~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~-~~~~~~~ 125 (1043)
..++.+.|+||||+.... ......+|++++|+|+..+...+. +... -...|.++|+||+|+.... .......
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~--i~~~--il~~~~ivVlNK~Dl~~~~~~~~~~~~ 236 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQG--IKRG--IIEMADLVAVTKSDGDLIVPARRIQAE 236 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHH--hHHH--HHhcCCEEEEeeecCCCchhHHHHHHH
Confidence 367789999999975322 334678999999999886432211 1111 1357889999999986321 1112223
Q ss_pred HHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 126 MRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 126 l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+...+.. +.........+++++||++|.|+++|++.+....+
T Consensus 237 l~~~l~~------~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 237 YVSALKL------LRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHTT------CC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHh------cCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3322210 00000011347899999999999999999987664
No 405
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.38 E-value=5.9e-07 Score=103.15 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=62.4
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEE--EecC--eeEEEEcCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYT--LWKD--HNINIIDTP 275 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~--~~~~--~~i~liDtP 275 (1043)
.+|+|+|+.|+|||||++.|+........ .++. ..+. .. |+......+ ...+ ..++++|||
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~----~~~~----~~~~-----~~--t~~~~~i~~v~q~~~~~~~Ltv~Dt~ 96 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPE----YPGP----SHRI-----KK--TVQVEQSKVLIKEGGVQLLLTIVDTP 96 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCC----CCSC----C------------CCEEEEEECC------CEEEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCC----CCCc----ccCC-----cc--ceeeeeEEEEEecCCcccceeeeech
Confidence 45799999999999999999754321110 0110 0000 00 111111111 1122 368999999
Q ss_pred CCCCchH------HH--------HHHh-----------Hh--cCeEEEEEeCC-CCcchHHHHHHHHHHhcCCCeEEEEe
Q psy11896 276 GHVDFTV------EV--------ERAL-----------RV--LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFIN 327 (1043)
Q Consensus 276 G~~df~~------e~--------~~~l-----------~~--~D~~ilVvda~-~g~~~~t~~~~~~~~~~~~p~ivviN 327 (1043)
|+.++.. .+ ..++ +. +++++++++.. .++.+....+++.+. .++|+|+|+|
T Consensus 97 g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v~iIlVin 175 (418)
T 2qag_C 97 GFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKVNIIPLIA 175 (418)
T ss_dssp -----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-TTSEEEEEEE
T ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-ccCcEEEEEE
Confidence 9876532 11 1111 12 34466666665 688887766666664 4899999999
Q ss_pred ccCCCC
Q psy11896 328 KLDRLG 333 (1043)
Q Consensus 328 KiD~~~ 333 (1043)
|+|+..
T Consensus 176 K~Dll~ 181 (418)
T 2qag_C 176 KADTLT 181 (418)
T ss_dssp STTSSC
T ss_pred cccCcc
Confidence 999863
No 406
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.36 E-value=1.8e-07 Score=105.31 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=70.8
Q ss_pred ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHH
Q psy11896 47 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQ 125 (1043)
Q Consensus 47 ~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~ 125 (1043)
+.++.++||||||+.++... ..+.+|++++|+|+..+...+.. .. ...++|.++|+||+|+.+. +.....+.
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l--~~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI--KK--GLMEVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC--CH--HHHHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH--HH--hhhcccCEEEEECCCCCChHHHHHHHHH
Confidence 45789999999999876544 35899999999998754221111 00 1125689999999998642 12222334
Q ss_pred HHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 126 MRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 126 l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+++.+..+ .........+++++||++|.|+++|++.+.....
T Consensus 219 l~~~l~~~------~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 219 YESALHIL------RRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHS------CCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhc------cccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 44332110 0000001246789999999999999999987553
No 407
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.29 E-value=1.3e-06 Score=94.33 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=71.7
Q ss_pred CeeEEEEeCCCCcchHHH------HHHHhhhcCEEEEEEeCCCCCchhHHH-H----HHHHHhcCCCEEEEEecCCCCCC
Q psy11896 49 DHNINIIDTPGHVDFTVE------VERALRVLDGAILVLCAVGGVQSQTLT-V----NRQMKRYDVPCIAFINKLDRLGA 117 (1043)
Q Consensus 49 ~~~i~liDTPG~~~~~~~------~~~~~~~aD~iIlVvDa~~~~~~~~~~-~----~~~l~~~~~piilvlNKiDl~~~ 117 (1043)
++.+.||||||+.++... +..++.. +++|+|+|+.......+.. . .......++|+++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 357999999999865322 3345566 8999999987655544322 1 12233457899999999998642
Q ss_pred CH-HHHHHHHHHhhhhccccc------------c---ccCCCCccceeeeeeeecccCCcchHHHHHHhhccc
Q psy11896 118 DP-YRVINQMRQKTSRWISNE------------S---LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 118 ~~-~~~~~~l~~~~~~~~~~~------------~---l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~ 174 (1043)
.. ....+.+++ +....... . +...+ ....+++++||++|.|+++|++.+...+..
T Consensus 187 ~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 187 EEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 21 111111110 00000000 0 00000 011367899999999999999999876653
No 408
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.29 E-value=1.9e-07 Score=104.98 Aligned_cols=135 Identities=8% Similarity=-0.022 Sum_probs=78.7
Q ss_pred ccccceEEEEe------cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCC-------CCc-hhH---HHHHHHHH
Q psy11896 37 TIQSAATYTLW------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-------GVQ-SQT---LTVNRQMK 99 (1043)
Q Consensus 37 T~~~~~~~~~~------~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~-------~~~-~~~---~~~~~~l~ 99 (1043)
|.......+.. ...++.+|||+|++++...|..++++++++|||+|.++ ... ..- ...+..+.
T Consensus 164 T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~ 243 (354)
T 2xtz_A 164 TTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 243 (354)
T ss_dssp CCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred ccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHH
Confidence 44444444444 34689999999999999999999999999999999871 111 111 22233332
Q ss_pred h----cCCCEEEEEecCCCCCC-----C-------------------HHHHHHHHHHhhhhccccccccCCCCccceeee
Q psy11896 100 R----YDVPCIAFINKLDRLGA-----D-------------------PYRVINQMRQKTSRWISNESLSEHKPIEYIRNI 151 (1043)
Q Consensus 100 ~----~~~piilvlNKiDl~~~-----~-------------------~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii 151 (1043)
. .++|++||+||+|+... . .++..+.+.+.+........ ..........++
T Consensus 244 ~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~-~~~~~~~~~~~~ 322 (354)
T 2xtz_A 244 KQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNT-APDRVDRVFKIY 322 (354)
T ss_dssp TCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTC-CTTTTTSCEEEE
T ss_pred hccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccc-cccccCcceEEE
Confidence 2 36899999999997321 0 11111111222111000000 000000112357
Q ss_pred eeeecccCCcchHHHHHHhhc
Q psy11896 152 GISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 152 ~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
.+||+++.|++++++.+....
T Consensus 323 eTSA~d~~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 323 RTTALDQKLVKKTFKLVDETL 343 (354)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHH
Confidence 899999999999999887654
No 409
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.26 E-value=7e-07 Score=101.17 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=50.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------ 266 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 266 (1043)
-.+|+++|.+|+|||||+++|+..... ....+++|+......+.+.+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~---------------------~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p 80 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQAS---------------------AENFPFCTIDPNESRVPVPDERFDFLCQYHKP 80 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC----------------------------------CCSEEEEECCCHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc---------------------ccCCCccccCceeEEEEECCccceeeccccCc
Confidence 357999999999999999999743211 12244555555554444432
Q ss_pred -----eeEEEEcCCCCCCchH-------HHHHHhHhcCeEEEEEeCCC
Q psy11896 267 -----HNINIIDTPGHVDFTV-------EVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 267 -----~~i~liDtPG~~df~~-------e~~~~l~~~D~~ilVvda~~ 302 (1043)
..+.+|||||+..+.. .....++.+|++++|+|+.+
T Consensus 81 ~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 81 ASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp SEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3599999999987654 45678899999999999974
No 410
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.26 E-value=6.5e-07 Score=98.86 Aligned_cols=155 Identities=13% Similarity=0.158 Sum_probs=73.0
Q ss_pred CccceeeeeecccccccCCccccC-CChhhhh--------hcCCccccceEEEEec--CeeEEEEeCCCC-------cch
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVM-DSMELER--------QRGITIQSAATYTLWK--DHNINIIDTPGH-------VDF 63 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~-d~~~~e~--------~~G~T~~~~~~~~~~~--~~~i~liDTPG~-------~~~ 63 (1043)
.||+.++ |..++||+|....... +.++.+. .+++.+......+... ...+++|||||+ ..+
T Consensus 18 ~~~I~lv-G~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 18 EFTLMVV-GESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp CEEEEEE-EETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CEEEEEE-CCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3677677 9999999999766333 2444332 1222222222222222 247999999999 322
Q ss_pred HHHHH-------HHhhhc-------------CEEEEEEeCCC-CCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HH
Q psy11896 64 TVEVE-------RALRVL-------------DGAILVLCAVG-GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YR 121 (1043)
Q Consensus 64 ~~~~~-------~~~~~a-------------D~iIlVvDa~~-~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~ 121 (1043)
...+. .+++.+ ++++++++.+. ++...+..+++.+. .++|+++|+||.|+..... ..
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~ 175 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERER 175 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHH
Confidence 22222 344333 34666666543 47776655555543 3579999999999864211 11
Q ss_pred HHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 122 VINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 122 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
..+.+.+.+ .. .. .+++.+||++| |+++++..+...+
T Consensus 176 ~~~~~~~~~----~~------~~---~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 176 LKKRILDEI----EE------HN---IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHH----HH------TT---CCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHH----HH------cC---CeEEecCCccc-cccHHHHHHHHHh
Confidence 122222221 11 11 25577999999 9999998887554
No 411
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.22 E-value=2.1e-07 Score=97.73 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=66.0
Q ss_pred cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC---CHHHHHH
Q psy11896 48 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA---DPYRVIN 124 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~---~~~~~~~ 124 (1043)
.+..+.+|||||+...... +...++.+++|+|++.+... .+......++|.++|+||+|+... +..+..+
T Consensus 107 ~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 179 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAVGADVEKMKA 179 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHH
T ss_pred CCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcchhhHHHHHHH
Confidence 3457999999995211100 01246889999999865322 222233346899999999998531 2332222
Q ss_pred HHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 125 QMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 125 ~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+.+. ....+++++||++|.|+++|++.+...+.
T Consensus 180 ~~~~~---------------~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 180 DAKLI---------------NPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHH---------------CTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHh---------------CCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 22211 11246789999999999999999986554
No 412
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.18 E-value=3.6e-06 Score=87.04 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=67.9
Q ss_pred CCCCcEEEEEeeeecCCccEEEEEEecCeecCCCEEEecCCCcEEEeceEEEeccCCeeecCeecCCCEEEE--ccC---
Q psy11896 498 GKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV--- 572 (1043)
Q Consensus 498 ~~~p~~~~V~K~~~d~~G~i~~~RV~sGtl~~gd~v~~~~~~~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--- 572 (1043)
.++||.+.|..++. ..|++..|||.+|++++||.|.+.+.+.+.+|.+|+ ...+++++|.|||.+++ .|+
T Consensus 3 ~~~p~rl~v~~v~~-g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~----~~~~~~~~A~aGd~V~l~L~gi~~~ 77 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK-DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGIL----SDDVETDTVAPGENLKIRLKGIEEE 77 (204)
T ss_dssp ----CBEEEEEEEE-SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEEC----SSSSCBSEECTTSEEEEEEEESSSS
T ss_pred CCCCEEEEEEEEEc-CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEE----ECCEEeEEECCCCEEEEEEcCCCHH
Confidence 47899999988876 459999999999999999999999988889999987 33468999999999997 777
Q ss_pred ccccCcEEecCCC
Q psy11896 573 DCASGDTFVTDKN 585 (1043)
Q Consensus 573 ~~~~Gdtl~~~~~ 585 (1043)
|+..||+|+ +++
T Consensus 78 di~rG~vl~-~~~ 89 (204)
T 3e1y_E 78 EILPGFILC-DPN 89 (204)
T ss_dssp CCCTTCEEB-CSS
T ss_pred HCccceEEE-CCC
Confidence 678999999 443
No 413
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.15 E-value=4.7e-06 Score=88.87 Aligned_cols=105 Identities=14% Similarity=0.029 Sum_probs=70.1
Q ss_pred CCCCcchHHHHHHHhhhcCEEEEEEeCCCCC--chhHH--HHHHHHH----hcCCCEEEEEec-CCCCCCCHHHHHHHHH
Q psy11896 57 TPGHVDFTVEVERALRVLDGAILVLCAVGGV--QSQTL--TVNRQMK----RYDVPCIAFINK-LDRLGADPYRVINQMR 127 (1043)
Q Consensus 57 TPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~--~~~~~--~~~~~l~----~~~~piilvlNK-iDl~~~~~~~~~~~l~ 127 (1043)
..|+..+...|..|+.++|++|||||+++.- ....+ ++...+. ..+.|++|++|| .|++.+-.. .++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~---~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH---HHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH---HHHH
Confidence 4688999999999999999999999998643 22221 1112221 258899999997 588764322 3444
Q ss_pred HhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 128 QKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
+.++ +... . ..+.|.++||.+|+|+.+-++++...+.
T Consensus 271 e~L~-------L~~l-~-r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELH-------LNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTT-------GGGG-C-SCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcC-------CccC-C-CcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 4442 2221 1 3467899999999998888888776543
No 414
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.15 E-value=5.7e-06 Score=94.49 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=77.7
Q ss_pred CccceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC--eeEEEE
Q psy11896 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD--HNINII 272 (1043)
Q Consensus 195 ~~~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~li 272 (1043)
+...+.+++|+|+.|+|||||++.|+... + .+. . . .....+.+.......+...+ ..++++
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~--l------~g~-~---~-----~~~~~~~~~~~i~~v~Q~~~l~~~ltv~ 100 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTK--F------EGE-P---A-----THTQPGVQLQSNTYDLQESNVRLKLTIV 100 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSC--C----------------------CCSSCEEEEEEEEEEC--CEEEEEEE
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCcc--c------cCC-c---C-----CCCCccceEeeEEEEeecCccccccchh
Confidence 34456789999999999999999997542 1 000 0 0 00012223322111122222 268999
Q ss_pred cCCCCCCch--------------HHHHHHhHh---------------cC-eEEEEEeCCCCcchHHHHHHHHHHhcCCCe
Q psy11896 273 DTPGHVDFT--------------VEVERALRV---------------LD-GAILVLCAVGGVQSQTLTVNRQMKRYDVPC 322 (1043)
Q Consensus 273 DtPG~~df~--------------~e~~~~l~~---------------~D-~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ 322 (1043)
|+||..+.. .....++.. .| ++++++|+.+++......+++.+. .+.|+
T Consensus 101 D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~v 179 (427)
T 2qag_B 101 STVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNI 179 (427)
T ss_dssp EEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEE
T ss_pred hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCE
Confidence 999976531 111122211 12 366788998999998888888776 78999
Q ss_pred EEEEeccCCCCCC-HHHHHHHHHHHhC
Q psy11896 323 IAFINKLDRLGAD-PYRVINQMRQKVG 348 (1043)
Q Consensus 323 ivviNKiD~~~~~-~~~~~~~i~~~l~ 348 (1043)
|+|+||+|....+ .....+.+.+.+.
T Consensus 180 I~Vi~KtD~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 180 IPIIAKADAISKSELTKFKIKITSELV 206 (427)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHB
T ss_pred EEEEcchhccchHHHHHHHHHHHHHHH
Confidence 9999999987532 2334455555454
No 415
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.09 E-value=2.1e-06 Score=98.60 Aligned_cols=155 Identities=14% Similarity=0.170 Sum_probs=68.5
Q ss_pred ccceeeeeecccccccCCccccCCChhhhhhcCC------cc--ccceEEEEecC--eeEEEEeCCCCcchHH------H
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGI------TI--QSAATYTLWKD--HNINIIDTPGHVDFTV------E 66 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~------T~--~~~~~~~~~~~--~~i~liDTPG~~~~~~------~ 66 (1043)
|++.++ |.+++||+|.....+....+.....|. |+ +.....+...+ ..+++|||||+.+... .
T Consensus 32 f~I~lv-G~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 32 FTLMVV-GESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred EEEEEE-CCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 567666 999999999865554443321111111 11 11111112222 2689999999976421 1
Q ss_pred H--------HHH-----------hhh--cCEEEEEEeCC-CCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH-HHHH
Q psy11896 67 V--------ERA-----------LRV--LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP-YRVI 123 (1043)
Q Consensus 67 ~--------~~~-----------~~~--aD~iIlVvDa~-~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~-~~~~ 123 (1043)
+ ..+ +.+ +++++++++.+ .++...+..++..+.. ++|+|+|+||+|+..... ....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k 189 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 189 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHH
Confidence 1 111 223 34566666665 5777777666666654 789999999999864211 1111
Q ss_pred HHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 124 NQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 124 ~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
+.+.+.+ .. ...+++.+|++++.++++++..+...+
T Consensus 190 ~~i~~~~----~~---------~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 190 KQIMKEI----QE---------HKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHH----HH---------HTCCCCCCC-----------------C
T ss_pred HHHHHHH----HH---------cCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2222222 11 113456789999999887766665433
No 416
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.07 E-value=1.2e-05 Score=92.95 Aligned_cols=148 Identities=18% Similarity=0.135 Sum_probs=79.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccc-cccccchhh-hhhcCceEeeee--------E----EEEe
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNV-GAVMDSMEL-ERQRGITIQSAA--------T----YTLW 264 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~-~~~~d~~~~-e~~~giTi~~~~--------~----~~~~ 264 (1043)
.++|+++|++|+||||++..|............+-+.+++ ....+.+.. ....|+.+.... . --.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998643211110001111000 000111110 011121111100 0 0012
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHh------HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCC-C-eEEEEeccCCCCCCH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERAL------RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-P-CIAFINKLDRLGADP 336 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l------~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~-p-~ivviNKiD~~~~~~ 336 (1043)
.++.+.||||||...........+ ..+|.+++|+|+..|.. .....+. ....+ | ..+|+||+|... ..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~-~~~~~~~i~gvVlnK~D~~~-~~ 254 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKA-FKEAVGEIGSIIVTKLDGSA-KG 254 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHH-HHTTSCSCEEEEEECSSSCS-TT
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHH-HhhcccCCeEEEEeCCCCcc-ch
Confidence 578999999999876543333322 25799999999988742 2222222 23346 7 789999999863 33
Q ss_pred HHHHHHHHHHhCCCc
Q psy11896 337 YRVINQMRQKVGHNA 351 (1043)
Q Consensus 337 ~~~~~~i~~~l~~~~ 351 (1043)
...+ .+...++..+
T Consensus 255 g~~l-~~~~~~~~pi 268 (432)
T 2v3c_C 255 GGAL-SAVAETKAPI 268 (432)
T ss_dssp HHHH-HHHHHSSCCE
T ss_pred HHHH-HHHHHHCCCE
Confidence 3333 3666666544
No 417
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.07 E-value=5.9e-05 Score=86.54 Aligned_cols=147 Identities=20% Similarity=0.104 Sum_probs=76.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccc--cccccchhhhhhcCceEeeeeE-------------EEE
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNV--GAVMDSMELERQRGITIQSAAT-------------YTL 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~--~~~~d~~~~e~~~giTi~~~~~-------------~~~ 263 (1043)
.+.|+++|.+|+||||++..|..+........-+-..+++ +.+-.-.......|+.+..... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4779999999999999999998543221111111111100 0000000011222332221100 011
Q ss_pred ecCeeEEEEcCCCCCCchHHHHH------HhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCHH
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVER------ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPY 337 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~------~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~ 337 (1043)
.+++.+.||||||.......... ....+|.+++|+||..|... ....+.....-.+..+++||+|... ..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD~~~-~g- 255 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLDGSA-KG- 255 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCSSCS-SH-
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCCCcc-cc-
Confidence 24589999999996543333222 22457999999999986432 2333333333345568999999863 22
Q ss_pred HHHHHHHHHhCC
Q psy11896 338 RVINQMRQKVGH 349 (1043)
Q Consensus 338 ~~~~~i~~~l~~ 349 (1043)
.....+....+.
T Consensus 256 G~~ls~~~~~g~ 267 (443)
T 3dm5_A 256 GGALSAVAATGA 267 (443)
T ss_dssp HHHHHHHHTTCC
T ss_pred cHHHHHHHHHCC
Confidence 233344444544
No 418
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.05 E-value=4e-06 Score=94.28 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=62.1
Q ss_pred cCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-----------chHHHHHHHHHHh--
Q psy11896 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-----------QSQTLTVNRQMKR-- 317 (1043)
Q Consensus 251 ~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-----------~~~t~~~~~~~~~-- 317 (1043)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++-- .......+.....
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 344555555667788999999999999999999999999999999999998621 1223333433332
Q ss_pred --cCCCeEEEEeccCCC
Q psy11896 318 --YDVPCIAFINKLDRL 332 (1043)
Q Consensus 318 --~~~p~ivviNKiD~~ 332 (1043)
.+.|+++|.||+|+.
T Consensus 257 ~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred cccCCcEEEEEECcCch
Confidence 468999999999963
No 419
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.98 E-value=1.9e-05 Score=85.58 Aligned_cols=136 Identities=16% Similarity=0.220 Sum_probs=75.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecC-CccccccccchhhhhhcCceEeeeeEEEEecCeeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~-~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtPG~~ 278 (1043)
.+++++|+.|+|||||++.|+....... |.+.- |... ......+++.+..... .-...++++|+||..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~--G~i~~~g~~i------~~~~~~~~i~~v~q~~---~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRK--ASSWNREEKI------PKTVEIKAIGHVIEEG---GVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------C------CCCCSCCEEEESCC-------CCEEEEECCCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCC--CccccCCccc------CcceeeeeeEEEeecC---CCcCCceEEechhhh
Confidence 4799999999999999999985432211 11110 0000 0000011111111100 001367899999964
Q ss_pred Cch------HHH--------HHHh--------------HhcCeEEEEEeCC-CCcchHHHHHHHHHHhcCCCeEEEEecc
Q psy11896 279 DFT------VEV--------ERAL--------------RVLDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINKL 329 (1043)
Q Consensus 279 df~------~e~--------~~~l--------------~~~D~~ilVvda~-~g~~~~t~~~~~~~~~~~~p~ivviNKi 329 (1043)
+.. ..+ ...+ ..++++++++|.. +|+.+....+++.+.+. +++++|+||+
T Consensus 72 ~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 72 DQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTG
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEecc
Confidence 311 011 1111 1247889999965 89999998888888776 9999999999
Q ss_pred CCCCCC-HHHHHHHHHHHh
Q psy11896 330 DRLGAD-PYRVINQMRQKV 347 (1043)
Q Consensus 330 D~~~~~-~~~~~~~i~~~l 347 (1043)
|....+ .....+.+.+.+
T Consensus 151 D~lt~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 151 DTMTLEEKSEFKQRVRKEL 169 (270)
T ss_dssp GGSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 988533 223334444434
No 420
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.96 E-value=1.1e-05 Score=91.77 Aligned_cols=84 Identities=18% Similarity=0.123 Sum_probs=61.9
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD------------ 266 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 266 (1043)
-.+++++|++|+|||||+++|+..... .....+++|+......+.+.+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a--------------------~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~ 79 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLG--------------------NPANYPYATIDPEEAKVAVPDERFDWLCEAYKP 79 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTT--------------------STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc--------------------cccCCCceeecceeeeeeeCCcchhhhhhhccc
Confidence 457999999999999999999853210 012245566666655555554
Q ss_pred -----eeEEEEcCCCCCC-------chHHHHHHhHhcCeEEEEEeCCC
Q psy11896 267 -----HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVG 302 (1043)
Q Consensus 267 -----~~i~liDtPG~~d-------f~~e~~~~l~~~D~~ilVvda~~ 302 (1043)
..+.++||||... +.......++.+|++++|+|+.+
T Consensus 80 ~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 80 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999654 44567788899999999999975
No 421
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.96 E-value=5.6e-05 Score=86.42 Aligned_cols=113 Identities=13% Similarity=0.122 Sum_probs=66.8
Q ss_pred eeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEEEecC-eeEEEEcCCCCC
Q psy11896 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHV 278 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDtPG~~ 278 (1043)
..++++|+.|+|||||++.|+..... ..|.+. .+..+.. ..+. .+.... ..++++|+||..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~--------~~g~~~t-~~~~-------v~q~~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNE--EEGAAK--------TGVVEVT-MERH-------PYKHPNIPNVVFWDLPGIG 131 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTT--STTSCC--------CCC-----CCCE-------EEECSSCTTEEEEECCCGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc--cCceEE--------ECCeecc-eeEE-------eccccccCCeeehHhhccc
Confidence 36999999999999999999853211 011111 1100000 0111 111121 368999999963
Q ss_pred C---chHHHHHH--hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCC
Q psy11896 279 D---FTVEVERA--LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 279 d---f~~e~~~~--l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
. -..+.... +...|..++ +++.. .+.|...+.+.+...+.|+++|+||.|..
T Consensus 132 ~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 132 STNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred chHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 2 12233332 233455544 77654 46777777888888899999999998854
No 422
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.93 E-value=7.4e-06 Score=92.41 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=54.5
Q ss_pred cCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCC-----------cchHHHHHHHHHHh--
Q psy11896 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-----------VQSQTLTVNRQMKR-- 317 (1043)
Q Consensus 251 ~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g-----------~~~~t~~~~~~~~~-- 317 (1043)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++- -.......+.....
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 33444445566778899999999999999998888889999999999999872 11222333443332
Q ss_pred --cCCCeEEEEeccCCC
Q psy11896 318 --YDVPCIAFINKLDRL 332 (1043)
Q Consensus 318 --~~~p~ivviNKiD~~ 332 (1043)
.+.|+++|+||+|+.
T Consensus 265 ~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLL 281 (362)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred hhCCCCEEEEEEChhhh
Confidence 468999999999963
No 423
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.80 E-value=3.5e-05 Score=84.50 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=79.3
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccc-cccch-hhhhhcCceEeeee-------------EEEE
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGA-VMDSM-ELERQRGITIQSAA-------------TYTL 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~-~~d~~-~~e~~~giTi~~~~-------------~~~~ 263 (1043)
.+.++++|+.|+||||++..|............+.+.+.... ..+.+ ......|+.+.... ..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999744321111001111110000 00000 00111233222110 0012
Q ss_pred ecCeeEEEEcCCCCCC--chHHHH------HHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCC
Q psy11896 264 WKDHNINIIDTPGHVD--FTVEVE------RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGA 334 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~d--f~~e~~------~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~ 334 (1043)
++++.+.||||||... ....+. .....+|.+++|+|+..| .......+.... .+| ..+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~- 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA- 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT-
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc-
Confidence 3678999999999877 433332 245578999999999865 233333333332 577 678999999763
Q ss_pred CHHHHHHHHHHHhCCC
Q psy11896 335 DPYRVINQMRQKVGHN 350 (1043)
Q Consensus 335 ~~~~~~~~i~~~l~~~ 350 (1043)
.. .....+...++..
T Consensus 254 ~~-g~~~~~~~~~~~p 268 (297)
T 1j8m_F 254 KG-GGALSAVAATGAT 268 (297)
T ss_dssp TH-HHHHHHHHTTTCC
T ss_pred ch-HHHHHHHHHHCcC
Confidence 33 2334455555543
No 424
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.78 E-value=4.9e-06 Score=87.51 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=56.0
Q ss_pred eEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC---CHHHHHHHHH
Q psy11896 51 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA---DPYRVINQMR 127 (1043)
Q Consensus 51 ~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~---~~~~~~~~l~ 127 (1043)
.+.++||+|....... .-...+..+.|+|+..+...... . ....++|.++|+||+|+... ...+..+.+.
T Consensus 120 d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~-~---~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 192 (226)
T 2hf9_A 120 DLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK-H---PGIMKTADLIVINKIDLADAVGADIKKMENDAK 192 (226)
T ss_dssp SEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT-C---HHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHH
T ss_pred CEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh-h---hhHhhcCCEEEEeccccCchhHHHHHHHHHHHH
Confidence 5777777774211100 01234556778886432211110 0 11136899999999998531 2222222221
Q ss_pred HhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhc
Q psy11896 128 QKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYT 172 (1043)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l 172 (1043)
. + ....+++++||++|.|++++++.+...+
T Consensus 193 ~-~--------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 193 R-I--------------NPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp H-H--------------CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H-h--------------CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 1 0 0123678999999999999999887544
No 425
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.69 E-value=2.3e-05 Score=93.37 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=61.2
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccccchhhhhhcCceEeeeeEEE---EecCeeEEEEcC
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYT---LWKDHNINIIDT 274 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~---~~~~~~i~liDt 274 (1043)
++..|+|+|.+|+|||||+|+|+.....+. +.+. .++.|........ ...+..+.|+||
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~----~~~t--------------t~~~T~gi~~~~~~~~~~~~~~i~LiDT 98 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFS----LGST--------------VQSHTKGIWMWCVPHPKKPGHILVLLDT 98 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSC----CCCS--------------SSCCCCSEEEEEEECSSSTTCEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccc----cCCC--------------CCCceeEEEEeecccccCCCceEEEecC
Confidence 457899999999999999999985432221 0000 0111111111000 124678999999
Q ss_pred CCCCCchH------HHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc
Q psy11896 275 PGHVDFTV------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318 (1043)
Q Consensus 275 PG~~df~~------e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~ 318 (1043)
||..+... ....++...-..++|+|+..++..+....+..+...
T Consensus 99 pGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 99 EGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp CCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred CCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHH
Confidence 99765322 122223332223788898888888888777666543
No 426
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.65 E-value=1.8e-05 Score=89.69 Aligned_cols=83 Identities=16% Similarity=0.037 Sum_probs=53.1
Q ss_pred CccceeeeeecccccccCCccccCCChhhhhhcCCccccceEEEEecC-----------------eeEEEEeCCCCcchH
Q psy11896 2 EHKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD-----------------HNINIIDTPGHVDFT 64 (1043)
Q Consensus 2 ~~k~~i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~~~ 64 (1043)
.+|+.|+ |.+++||+|.+...+.........|++|++++.+.+.+.+ .++.+|||||+....
T Consensus 22 ~~kvgIV-G~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIV-GLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEE-CCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3577778 9999999999777776666677889999999999888754 249999999998754
Q ss_pred H-------HHHHHhhhcCEEEEEEeCCC
Q psy11896 65 V-------EVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 65 ~-------~~~~~~~~aD~iIlVvDa~~ 85 (1043)
+ .+..+++.+|++++|+|+++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC--
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 4 67889999999999999874
No 427
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.62 E-value=5.8e-05 Score=83.81 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=62.3
Q ss_pred cCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-----------CcchHHHHHHHHHHh--
Q psy11896 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-----------GVQSQTLTVNRQMKR-- 317 (1043)
Q Consensus 251 ~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-----------g~~~~t~~~~~~~~~-- 317 (1043)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ .-.......|.....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 4456666667788889999999999999999999999999999999999972 111222333433322
Q ss_pred --cCCCeEEEEeccCCC
Q psy11896 318 --YDVPCIAFINKLDRL 332 (1043)
Q Consensus 318 --~~~p~ivviNKiD~~ 332 (1043)
.++|+++|.||+|+.
T Consensus 225 ~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred ccCCCeEEEEEECchhh
Confidence 468999999999974
No 428
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.60 E-value=0.0001 Score=76.05 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=59.1
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc-----CCCeEEEEeccCCCCCCHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-----DVPCIAFINKLDRLGADPYRVI 340 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~~~~~~~ 340 (1043)
.+.+.+||||+.. ...+..++..+|.+++++.....- ..+...++.+.+. ++++.+|+|++|.......+..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~ 151 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLK 151 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHH
Confidence 5899999999976 466778889999999999998766 7777777777654 3577899999996533333444
Q ss_pred HHHHHHhCCC
Q psy11896 341 NQMRQKVGHN 350 (1043)
Q Consensus 341 ~~i~~~l~~~ 350 (1043)
+.+ +.++..
T Consensus 152 ~~l-~~~~~~ 160 (206)
T 4dzz_A 152 ESI-KDTGVK 160 (206)
T ss_dssp HHH-HHHTCC
T ss_pred HHH-HHcCCc
Confidence 433 335543
No 429
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.59 E-value=5.2e-05 Score=83.53 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=49.3
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCc-chHHH-HHHHHHHhcCCCeEEEEeccCCC
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTL-TVNRQMKRYDVPCIAFINKLDRL 332 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~-~~~t~-~~~~~~~~~~~p~ivviNKiD~~ 332 (1043)
.+.+||| +.+|..-...+++.+|++|+|+|+.+.. ..... ..+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899999 8888877778889999999999999754 22322 22334455789999999999986
No 430
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.58 E-value=4.6e-05 Score=84.32 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=60.6
Q ss_pred cCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCC-------CCcc----hHHHHHHHHHHh--
Q psy11896 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV-------GGVQ----SQTLTVNRQMKR-- 317 (1043)
Q Consensus 251 ~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~-------~g~~----~~t~~~~~~~~~-- 317 (1043)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.+ +.-. ......+.....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 445555566677889999999999999999888888999999999999765 2111 122333433322
Q ss_pred --cCCCeEEEEeccCCC
Q psy11896 318 --YDVPCIAFINKLDRL 332 (1043)
Q Consensus 318 --~~~p~ivviNKiD~~ 332 (1043)
.++|+++|.||+|+.
T Consensus 231 ~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLL 247 (327)
T ss_dssp GGTTCEEEEEEECHHHH
T ss_pred ccCCceEEEEEECchhh
Confidence 468999999999964
No 431
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.50 E-value=0.00016 Score=84.78 Aligned_cols=119 Identities=18% Similarity=0.124 Sum_probs=72.8
Q ss_pred cCeeEEEEeCCCCcc----hHHHHHHHh--hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCE-EEEEecCCCCCCCHH
Q psy11896 48 KDHNINIIDTPGHVD----FTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPY 120 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~----~~~~~~~~~--~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pi-ilvlNKiDl~~~~~~ 120 (1043)
.++.++||||||... +..++.... ..+|.+++|+|+..+.. .......+... +|+ ++|+||+|..... .
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~~-g 257 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAKG-G 257 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCCC-T
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccch-H
Confidence 677899999999873 333333222 27899999999987643 33334444332 685 8999999986432 2
Q ss_pred HHHHHHHHhhhhccccccccC--CCCccceeeeeeeecccCC-cchHHHHHHhh
Q psy11896 121 RVINQMRQKTSRWISNESLSE--HKPIEYIRNIGISAHIDSG-KTTLTERILFY 171 (1043)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~l~~--~~~~~~~~ii~iSa~~g~G-i~~L~~~l~~~ 171 (1043)
..++ +...++.-+...+... .....+.+.+++|+..|.| +++|++.+...
T Consensus 258 ~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 258 GALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 2333 2223321111011111 1112345667899999999 99999999765
No 432
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.49 E-value=0.00011 Score=80.01 Aligned_cols=60 Identities=23% Similarity=0.274 Sum_probs=44.4
Q ss_pred EcCCCCCC-chHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 272 IDTPGHVD-FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 272 iDtPG~~d-f~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
=+.|||.. ...++...+..+|+++.|+||..+.......+.+.+ .++|+++|+||+|+..
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 35899974 667889999999999999999987766544444443 5789999999999863
No 433
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.41 E-value=2.4e-06 Score=96.88 Aligned_cols=123 Identities=8% Similarity=0.022 Sum_probs=71.7
Q ss_pred cceeeeeecccccccCCccccCC-------ChhhhhhcCCccccceEEEEecCeeEEEEeCCCCcch-------HHHHHH
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMD-------SMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDF-------TVEVER 69 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d-------~~~~e~~~G~T~~~~~~~~~~~~~~i~liDTPG~~~~-------~~~~~~ 69 (1043)
++.++ |.+++||+|...+.... .......||+|++.....+ +..+.++||||+.+. ......
T Consensus 162 ~i~~v-G~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 162 DVYVV-GCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL---DEESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp CEEEE-EBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES---SSSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred eEEEe-cCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe---cCCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 34455 88999988874332221 2234677899988765443 224899999998642 222222
Q ss_pred H---hhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCC-CHHHHHHHHHHhh
Q psy11896 70 A---LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKT 130 (1043)
Q Consensus 70 ~---~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~-~~~~~~~~l~~~~ 130 (1043)
. ....+.+++++|+...........+.++...++|+++++||+|.... +.+...+.+++.+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~ 302 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHA 302 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB
T ss_pred HhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHh
Confidence 2 35678899999985322222222233445567899999999998653 3444555555554
No 434
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00029 Score=79.09 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=49.3
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC-------C--c--chHHHHHHHHHHh----cCCCeEEEEecc
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-------G--V--QSQTLTVNRQMKR----YDVPCIAFINKL 329 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~-------g--~--~~~t~~~~~~~~~----~~~p~ivviNKi 329 (1043)
+...+.+|||+|+..|...+..+++.++++|+|+|.++ . . .......+..... .+.|+++|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 35789999999999999999999999999999999861 1 1 1122233333322 468999999999
Q ss_pred CCC
Q psy11896 330 DRL 332 (1043)
Q Consensus 330 D~~ 332 (1043)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 963
No 435
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.29 E-value=0.00015 Score=81.04 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=66.4
Q ss_pred ecCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCCCCH--HHHHH
Q psy11896 47 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP--YRVIN 124 (1043)
Q Consensus 47 ~~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~~~~--~~~~~ 124 (1043)
..+..+.|+||||..+-.. .....+|.+++|+|+..+... ..+...+ ..+|.++++||+|+..... ....+
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~--~~i~~~i--~~~~~ivvlNK~Dl~~~~~~s~~~~~ 217 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDEL--QGIKKGI--FELADMIAVNKADDGDGERRASAAAS 217 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccH--HHHHHHH--hccccEEEEEchhccCchhHHHHHHH
Confidence 3578999999999975322 234789999999998643211 0010011 1246678889999753211 11122
Q ss_pred HHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhcc
Q psy11896 125 QMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173 (1043)
Q Consensus 125 ~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~ 173 (1043)
.+...+. . +.........+++++||+++.|+++|++.+.....
T Consensus 218 ~l~~a~~----l--~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 218 EYRAALH----I--LTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHT----T--BCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHH----h--ccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222111 0 00000001257889999999999999999987654
No 436
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.13 E-value=0.00062 Score=75.39 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=74.6
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccccc-ccchh-hhh---hcCceEe-eeeE----------E
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAV-MDSME-LER---QRGITIQ-SAAT----------Y 261 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~-~d~~~-~e~---~~giTi~-~~~~----------~ 261 (1043)
..+.++++|..|+||||++..|...........-+.+.+.+... .+... ... ..++.+- .... .
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDA 183 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHH
Confidence 34679999999999999999987442211111111111110000 00000 000 2222222 1000 0
Q ss_pred E---EecCeeEEEEcCCCCCCchHHHHHHh------------HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEE
Q psy11896 262 T---LWKDHNINIIDTPGHVDFTVEVERAL------------RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAF 325 (1043)
Q Consensus 262 ~---~~~~~~i~liDtPG~~df~~e~~~~l------------~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivv 325 (1043)
+ ..+++.+.||||||...........+ ..+|.+++|+|+..+ ..+....+.. ....+ .-++
T Consensus 184 l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~-~~~~~i~GvV 260 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEF-SKVADVSGII 260 (320)
T ss_dssp HHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHH-TTTSCCCEEE
T ss_pred HHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHH-hhcCCCcEEE
Confidence 0 01468999999999765433332222 137899999999865 2222222221 12243 3478
Q ss_pred EeccCCCCCCHHHHHHHHHHHhCCCc
Q psy11896 326 INKLDRLGADPYRVINQMRQKVGHNA 351 (1043)
Q Consensus 326 iNKiD~~~~~~~~~~~~i~~~l~~~~ 351 (1043)
+||+|.... . ..+..+...++..+
T Consensus 261 ltk~d~~~~-~-g~~~~~~~~~~~Pi 284 (320)
T 1zu4_A 261 LTKMDSTSK-G-GIGLAIKELLNIPI 284 (320)
T ss_dssp EECGGGCSC-T-THHHHHHHHHCCCE
T ss_pred EeCCCCCCc-h-hHHHHHHHHHCcCE
Confidence 999997532 2 23445555666543
No 437
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.13 E-value=0.00091 Score=75.72 Aligned_cols=63 Identities=17% Similarity=0.034 Sum_probs=40.6
Q ss_pred eEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 268 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.+.-+++| +.+|...+....+.+|++++|+|+.+........+.+.+ .+.|+++|+||+|+..
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLP 112 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSC
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCC
Confidence 34445554 677888887778999999999999975543322233322 3789999999999874
No 438
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.11 E-value=0.00039 Score=72.14 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=59.3
Q ss_pred cCeeEEEEcCCCC-CCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh-cCCCeEEEEeccCCCC-CCHHHHHH
Q psy11896 265 KDHNINIIDTPGH-VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-YDVPCIAFINKLDRLG-ADPYRVIN 341 (1043)
Q Consensus 265 ~~~~i~liDtPG~-~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~-~~~p~ivviNKiD~~~-~~~~~~~~ 341 (1043)
+.+.+.+||||+. .. ..+..++..+|.+|+++.+...-...+...++.+.. .+.+..+|+|+.|... ....+..+
T Consensus 66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~ 143 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQ 143 (209)
T ss_dssp GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHH
T ss_pred hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHH
Confidence 4688999999997 44 345678899999999999876555556666666665 3678889999999765 33344445
Q ss_pred HHHHHhCCC
Q psy11896 342 QMRQKVGHN 350 (1043)
Q Consensus 342 ~i~~~l~~~ 350 (1043)
.+++ ++..
T Consensus 144 ~l~~-~g~~ 151 (209)
T 3cwq_A 144 LLTT-AGLP 151 (209)
T ss_dssp HHHH-TTCC
T ss_pred HHHH-cCCc
Confidence 5544 5543
No 439
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.06 E-value=0.00076 Score=78.06 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=73.9
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccccc-ccchh-hhhhcCceEeeeeEEE-------------
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAV-MDSME-LERQRGITIQSAATYT------------- 262 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~-~d~~~-~e~~~giTi~~~~~~~------------- 262 (1043)
.-..++|+|..|+|||||+..|............+.+++.+... .+.+. ....+++.+.......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 34679999999999999999998542111100112222211000 00000 0112333322211000
Q ss_pred EecCeeEEEEcCCCCCCchHHH-------HHHhH-----hcCeEEEEEeCCCCcchHHHHHHHHHHh-cCCCeEEEEecc
Q psy11896 263 LWKDHNINIIDTPGHVDFTVEV-------ERALR-----VLDGAILVLCAVGGVQSQTLTVNRQMKR-YDVPCIAFINKL 329 (1043)
Q Consensus 263 ~~~~~~i~liDtPG~~df~~e~-------~~~l~-----~~D~~ilVvda~~g~~~~t~~~~~~~~~-~~~p~ivviNKi 329 (1043)
...++.+.||||+|........ .+..+ ..+-+++|+|+..|.. ....++.... .+ ...+++||+
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~-itgvIlTKL 448 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVG-LTGITLTKL 448 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTC-CSEEEEECG
T ss_pred HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcC-CCEEEEEcC
Confidence 0146789999999975432221 22222 2456899999987732 2222333322 23 345789999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCc
Q psy11896 330 DRLGADPYRVINQMRQKVGHNA 351 (1043)
Q Consensus 330 D~~~~~~~~~~~~i~~~l~~~~ 351 (1043)
|-. +.. ..+-.+...++..+
T Consensus 449 D~t-akg-G~~lsi~~~~~~PI 468 (503)
T 2yhs_A 449 DGT-AKG-GVIFSVADQFGIPI 468 (503)
T ss_dssp GGC-SCC-THHHHHHHHHCCCE
T ss_pred CCc-ccc-cHHHHHHHHHCCCE
Confidence 964 222 23444555555433
No 440
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.04 E-value=0.00044 Score=78.55 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=60.4
Q ss_pred cCceEeeeeEEEEecCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC----------Ccc-hHHHHHHHHHHh--
Q psy11896 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----------GVQ-SQTLTVNRQMKR-- 317 (1043)
Q Consensus 251 ~giTi~~~~~~~~~~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~----------g~~-~~t~~~~~~~~~-- 317 (1043)
+..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++ --. ......+.....
T Consensus 201 r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred ccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 3334444455677788999999999999999999999999999999999986 111 122233333332
Q ss_pred --cCCCeEEEEeccCCC
Q psy11896 318 --YDVPCIAFINKLDRL 332 (1043)
Q Consensus 318 --~~~p~ivviNKiD~~ 332 (1043)
.++|+++|.||+|+.
T Consensus 281 ~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 281 WLRTISVILFLNKQDLL 297 (402)
T ss_dssp TCSSCCEEEEEECHHHH
T ss_pred cCCCCeEEEEEEChhhh
Confidence 367999999999963
No 441
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.99 E-value=0.00066 Score=77.78 Aligned_cols=149 Identities=18% Similarity=0.192 Sum_probs=76.0
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccc-cccchh-hhhhcCceEeeeeE-----E--------E
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGA-VMDSME-LERQRGITIQSAAT-----Y--------T 262 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~-~~d~~~-~e~~~giTi~~~~~-----~--------~ 262 (1043)
..+.++++|+.|+||||++..|............+.+.+.+.. ..+.+. .....|+.+..... . +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999854322111111111111000 000000 01122332221100 0 0
Q ss_pred EecCeeEEEEcCCCCCCchHHHHH------HhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q psy11896 263 LWKDHNINIIDTPGHVDFTVEVER------ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD 335 (1043)
Q Consensus 263 ~~~~~~i~liDtPG~~df~~e~~~------~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~ 335 (1043)
..+++.+.||||||.......... ....+|.+++|+|+..| .......+... ..++ .-+++||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~-~~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHH-HHTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHH-hcCCceEEEEeCcCCcc-c
Confidence 125788999999996554322221 12358999999999865 22222222222 2344 567899999753 2
Q ss_pred HHHHHHHHHHHhCCCc
Q psy11896 336 PYRVINQMRQKVGHNA 351 (1043)
Q Consensus 336 ~~~~~~~i~~~l~~~~ 351 (1043)
.. ....+....+..+
T Consensus 253 ~g-~alsi~~~~g~PI 267 (425)
T 2ffh_A 253 GG-AALSARHVTGKPI 267 (425)
T ss_dssp CH-HHHHHHHHHCCCE
T ss_pred HH-HHHHHHHHHCCCE
Confidence 22 2334555566543
No 442
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.99 E-value=0.00086 Score=76.57 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=66.2
Q ss_pred cceeeeeecccccccCCccccCC---Chh-hhhhcCCccccceEEEEecCe--eEEEEeCCCCcch--------------
Q psy11896 4 KVKIIHIKQEQVRGKDNVGAVMD---SME-LERQRGITIQSAATYTLWKDH--NINIIDTPGHVDF-------------- 63 (1043)
Q Consensus 4 k~~i~~~~~~~gk~s~~~~~~~d---~~~-~e~~~G~T~~~~~~~~~~~~~--~i~liDTPG~~~~-------------- 63 (1043)
++-|+ |-+++||+|.......- ..+ ....++.++......+...+. .++++|+||+...
T Consensus 44 ~vaLv-G~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 44 NILCV-GETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEE-CSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 35556 99999999984332221 111 122356665544334443332 6899999998642
Q ss_pred HHHHHHHhh-------------hc--C-EEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC
Q psy11896 64 TVEVERALR-------------VL--D-GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 116 (1043)
Q Consensus 64 ~~~~~~~~~-------------~a--D-~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~ 116 (1043)
...+..++. ++ | +++||+|+..++...+.++++.+. .++|+|+|+||+|...
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccc
Confidence 112222221 12 2 577888998889999988888886 6889999999999875
No 443
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.98 E-value=0.0026 Score=64.72 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=36.2
Q ss_pred CCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH----HHHHh----cCCCeEEEEecc-CCCC
Q psy11896 276 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKR----YDVPCIAFINKL-DRLG 333 (1043)
Q Consensus 276 G~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~----~~~~~----~~~p~ivviNKi-D~~~ 333 (1043)
|+..+...+..++..+|++|+|||+.+.-......-+ ..+.. .+.|++|+.||. |..+
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~ 177 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 177 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence 6667777789999999999999999865222233222 22221 467999999996 6654
No 444
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.82 E-value=0.00047 Score=74.14 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=39.6
Q ss_pred CCCCCCc-hHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 274 TPGHVDF-TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 274 tPG~~df-~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
-|||... ..++...+..+|.++.|+||..+.......+- .+ ++|+++|+||+|+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIAD 60 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCC
Confidence 4999765 46888999999999999999987655432222 22 899999999999873
No 445
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.76 E-value=0.0034 Score=75.83 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=41.1
Q ss_pred CeeEEEEcCCCCCCc---------hHHHHHH----hHh-cCeEEEEEeCCCCcc-hHHHHHHHHHHhcCCCeEEEEeccC
Q psy11896 266 DHNINIIDTPGHVDF---------TVEVERA----LRV-LDGAILVLCAVGGVQ-SQTLTVNRQMKRYDVPCIAFINKLD 330 (1043)
Q Consensus 266 ~~~i~liDtPG~~df---------~~e~~~~----l~~-~D~~ilVvda~~g~~-~~t~~~~~~~~~~~~p~ivviNKiD 330 (1043)
...+.|+|.||...- ...+... +.. ...+++++++..... .....+++.+...+.+.|+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 457999999985431 1122222 222 245666777654433 2334555666667889999999999
Q ss_pred CCCC
Q psy11896 331 RLGA 334 (1043)
Q Consensus 331 ~~~~ 334 (1043)
+...
T Consensus 226 lv~~ 229 (608)
T 3szr_A 226 LVDK 229 (608)
T ss_dssp GSSS
T ss_pred hcCc
Confidence 9743
No 446
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.76 E-value=0.0029 Score=67.91 Aligned_cols=67 Identities=9% Similarity=-0.085 Sum_probs=51.1
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCC
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDR 331 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 331 (1043)
+.+.+.|||||+..........++..+|.+|+|+.........+...++.+.+.+++.+ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56899999999976543223334457899999999887666667777777777888987 89999874
No 447
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.73 E-value=0.0012 Score=73.25 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=74.5
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccc--cch-hhhhhcCceEeeeeEEE-------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVM--DSM-ELERQRGITIQSAATYT------------- 262 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~--d~~-~~e~~~giTi~~~~~~~------------- 262 (1043)
-..++++|+.|+|||||+..|............+.+.+.+ +.. +.. ......|+.+.......
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~-r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF-RAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS-STTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc-ccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 3579999999999999999998542111100011111100 000 000 00122333221111000
Q ss_pred EecCeeEEEEcCCCCCC----chHHHHHH--hHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCCCCCCH
Q psy11896 263 LWKDHNINIIDTPGHVD----FTVEVERA--LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADP 336 (1043)
Q Consensus 263 ~~~~~~i~liDtPG~~d----f~~e~~~~--l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~ 336 (1043)
...++.+.++||+|... +..++... .-..|-.++++|+..|. +.....+...+.--...+++||+|... ..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~a-~~ 284 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDADA-RG 284 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGCS-CC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCcc-ch
Confidence 01356778899999643 33333221 13478899999988763 333334433333334588999999742 33
Q ss_pred HHHHHHHHHHhCCCc
Q psy11896 337 YRVINQMRQKVGHNA 351 (1043)
Q Consensus 337 ~~~~~~i~~~l~~~~ 351 (1043)
... -.+....+..+
T Consensus 285 G~~-l~~~~~~~~pi 298 (328)
T 3e70_C 285 GAA-LSISYVIDAPI 298 (328)
T ss_dssp HHH-HHHHHHHTCCE
T ss_pred hHH-HHHHHHHCCCE
Confidence 233 34445555443
No 448
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.72 E-value=0.00088 Score=81.01 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=34.0
Q ss_pred hcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCC
Q psy11896 290 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRL 332 (1043)
Q Consensus 290 ~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~ 332 (1043)
.+|.+++|+.+.......+...+..+.+.++++ -+|+|+++..
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 458899998877666667778888888888875 5889999864
No 449
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.72 E-value=0.0024 Score=70.12 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=74.1
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccc-ccccch-hhhhhcCceEeeee-------------EEEE
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVG-AVMDSM-ELERQRGITIQSAA-------------TYTL 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~-~~~d~~-~~e~~~giTi~~~~-------------~~~~ 263 (1043)
...++++|+.|+||||++..|............+.+.+.+. ...+.. ..-...|+.+.... ....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~ 183 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 183 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHH
Confidence 46799999999999999999975421111100111111100 000000 00012233221110 0001
Q ss_pred ecCeeEEEEcCCCCCCchHHHHH-------Hh-----HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeEEEEeccCC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVER-------AL-----RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 331 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~-------~l-----~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~ 331 (1043)
..++.+.++||||.......+.. .+ ..+|.+++|+|+..+ .......+...+.--..-+++||+|.
T Consensus 184 ~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~gvVlTk~D~ 261 (306)
T 1vma_A 184 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVTGIILTKLDG 261 (306)
T ss_dssp HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 24678999999997544433322 11 137888999999744 12222222222222234577899997
Q ss_pred CCCCHHHHHHHHHHHhCCCce
Q psy11896 332 LGADPYRVINQMRQKVGHNAA 352 (1043)
Q Consensus 332 ~~~~~~~~~~~i~~~l~~~~~ 352 (1043)
.. .... +.++...++..+.
T Consensus 262 ~~-~gG~-~l~~~~~~~~Pi~ 280 (306)
T 1vma_A 262 TA-KGGI-TLAIARELGIPIK 280 (306)
T ss_dssp CS-CTTH-HHHHHHHHCCCEE
T ss_pred cc-chHH-HHHHHHHHCCCEE
Confidence 52 2222 4556666665443
No 450
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.67 E-value=0.001 Score=75.36 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=67.5
Q ss_pred ccceeeeeecccccccCCccccCCCh-hhhhhcCCccccceEEEEecC-----------------eeEEEEeCCCCcc--
Q psy11896 3 HKVKIIHIKQEQVRGKDNVGAVMDSM-ELERQRGITIQSAATYTLWKD-----------------HNINIIDTPGHVD-- 62 (1043)
Q Consensus 3 ~k~~i~~~~~~~gk~s~~~~~~~d~~-~~e~~~G~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~-- 62 (1043)
.++-++ |..++||+|.+...+.... .....|++|++++.+.+.+.+ ..+.+|||||+..
T Consensus 21 ~~vgiV-G~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 21 LKTGIV-GMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CEEEEE-ECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 355566 9999999999776666555 677889999999999998876 4689999999753
Q ss_pred -----hHHHHHHHhhhcCEEEEEEeCCC
Q psy11896 63 -----FTVEVERALRVLDGAILVLCAVG 85 (1043)
Q Consensus 63 -----~~~~~~~~~~~aD~iIlVvDa~~ 85 (1043)
+...+...++.+|++++|+|+..
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55678888999999999999874
No 451
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.63 E-value=0.0031 Score=69.23 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=36.4
Q ss_pred HHhHhcCeEEEEEeCCCCc-chHH-HHHHHHHHhcCCCeEEEEeccCCCC
Q psy11896 286 RALRVLDGAILVLCAVGGV-QSQT-LTVNRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 286 ~~l~~~D~~ilVvda~~g~-~~~t-~~~~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
.+++.+|++++|+|+.+.. .... ...+..+...++|+++|+||+|+..
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN 124 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC
Confidence 4678999999999999753 3332 2334455668999999999999863
No 452
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.60 E-value=0.0018 Score=68.77 Aligned_cols=86 Identities=12% Similarity=0.160 Sum_probs=60.1
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQM 343 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i 343 (1043)
+.+.+.+||||+.... .+..++..+|.+++|+.+...-...+..+.+.+...+++ +.+++||.+. ....+.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 5789999999986543 456678999999999998754444555566666667765 6789999983 2346677
Q ss_pred HHHhCCCceeeeec
Q psy11896 344 RQKVGHNAAFLQIP 357 (1043)
Q Consensus 344 ~~~l~~~~~~~~~p 357 (1043)
.+.++.......+|
T Consensus 203 ~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 203 KKHLPEDKILGIIP 216 (254)
T ss_dssp HHHSCGGGEEEEEE
T ss_pred HHHhcCCccccccc
Confidence 78777433333333
No 453
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.54 E-value=0.0034 Score=68.60 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=74.1
Q ss_pred ceeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccc-cccch-hhhhhcCceEeeee-----EE--------E
Q psy11896 198 YIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGA-VMDSM-ELERQRGITIQSAA-----TY--------T 262 (1043)
Q Consensus 198 ~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~-~~d~~-~~e~~~giTi~~~~-----~~--------~ 262 (1043)
.-+.++++|+.|+||||++..|............+.+.+.... ..... ......|+.+.... .. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998744221111001111110000 00000 00111233222110 00 0
Q ss_pred EecCeeEEEEcCCCCCCchHHHHH----Hh--HhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCC
Q psy11896 263 LWKDHNINIIDTPGHVDFTVEVER----AL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGAD 335 (1043)
Q Consensus 263 ~~~~~~i~liDtPG~~df~~e~~~----~l--~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~ 335 (1043)
...++.+.|+||||.......... .. ..+|.+++|+|+..+ .......+.... .++ .-+|+||+|... .
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-S
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-c
Confidence 014689999999986543222222 21 258899999998754 222222332222 244 457899999763 2
Q ss_pred HHHHHHHHHHHhCCCc
Q psy11896 336 PYRVINQMRQKVGHNA 351 (1043)
Q Consensus 336 ~~~~~~~i~~~l~~~~ 351 (1043)
... .-.+....+..+
T Consensus 253 ~g~-~~~~~~~~~~pi 267 (295)
T 1ls1_A 253 GGA-ALSARHVTGKPI 267 (295)
T ss_dssp CHH-HHHHHHHHCCCE
T ss_pred HHH-HHHHHHHHCcCE
Confidence 223 334555566543
No 454
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.52 E-value=0.003 Score=69.15 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=57.3
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh------cCCCeE-EEEeccCCCCCCHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR------YDVPCI-AFINKLDRLGADPYR 338 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~------~~~p~i-vviNKiD~~~~~~~~ 338 (1043)
.+.+.|||||+.... ....++..+|.+|+++.+...-...+...++.+.. .+++++ +|+|+.|.......+
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~ 231 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKS 231 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHH
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHH
Confidence 578999999997543 34567778999999999876554455555444433 366744 889999976433446
Q ss_pred HHHHHHHHhCC
Q psy11896 339 VINQMRQKVGH 349 (1043)
Q Consensus 339 ~~~~i~~~l~~ 349 (1043)
.++++.+.++.
T Consensus 232 ~~~~~~~~~~~ 242 (298)
T 2oze_A 232 NLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhcc
Confidence 67778887764
No 455
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.48 E-value=0.0031 Score=69.16 Aligned_cols=149 Identities=16% Similarity=0.125 Sum_probs=74.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCcccccc-ccchh-hhhhcCceEeeeeEE----------E---E
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAV-MDSME-LERQRGITIQSAATY----------T---L 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~-~d~~~-~e~~~giTi~~~~~~----------~---~ 263 (1043)
-..++++|+.|||||||+..|............+.+.+.+..- .+... ....+++.+...... + .
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999998542211111112222110000 00000 001122222111000 0 1
Q ss_pred ecCeeEEEEcCCCCCCchHHHHH-------H----h-HhcCeEEEEEeCCCCcchHHHHHHHHHH-hcCCCeEEEEeccC
Q psy11896 264 WKDHNINIIDTPGHVDFTVEVER-------A----L-RVLDGAILVLCAVGGVQSQTLTVNRQMK-RYDVPCIAFINKLD 330 (1043)
Q Consensus 264 ~~~~~i~liDtPG~~df~~e~~~-------~----l-~~~D~~ilVvda~~g~~~~t~~~~~~~~-~~~~p~ivviNKiD 330 (1043)
..++.+.++||+|..+....... + + ...+.+++++|+..+.. ....++... ..+ ..++++||.|
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~-~t~iivTh~d 258 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVG-LTGVIVTKLD 258 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHC-CSEEEEECTT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcC-CcEEEEECCc
Confidence 13456789999996543322211 1 1 23677889999987643 223333333 234 3678899998
Q ss_pred CCCCCHHHHHHHHHHHhCCCce
Q psy11896 331 RLGADPYRVINQMRQKVGHNAA 352 (1043)
Q Consensus 331 ~~~~~~~~~~~~i~~~l~~~~~ 352 (1043)
... .. ..+-.+...++..+.
T Consensus 259 ~~a-~g-g~~l~i~~~~~~pi~ 278 (304)
T 1rj9_A 259 GTA-KG-GVLIPIVRTLKVPIK 278 (304)
T ss_dssp SSC-CC-TTHHHHHHHHCCCEE
T ss_pred ccc-cc-cHHHHHHHHHCCCeE
Confidence 752 22 223355555665443
No 456
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.38 E-value=0.009 Score=65.25 Aligned_cols=144 Identities=14% Similarity=0.127 Sum_probs=71.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCC-ce-eeeeecCCcccc-ccccchhh-hhhcCceEeeee-------EEEEecCe
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGR-IS-EMHEVRGKDNVG-AVMDSMEL-ERQRGITIQSAA-------TYTLWKDH 267 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~-~~-~~~~v~~~~~~~-~~~d~~~~-e~~~giTi~~~~-------~~~~~~~~ 267 (1043)
-+.++++|+.|+||||++..|...... -. +..-++ .+.+. ...+.... ....|+...... .-....++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~-~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT-TDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE-CCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe-cCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 357999999999999999999743211 11 111111 11100 00000000 011122111000 00012568
Q ss_pred eEEEEcCCCCCCchHHHH----HHhH--hcCeEEEEEeCCCCcchHHHHHHHHHHhcC-C-CeEEEEeccCCCCCCHHHH
Q psy11896 268 NINIIDTPGHVDFTVEVE----RALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYD-V-PCIAFINKLDRLGADPYRV 339 (1043)
Q Consensus 268 ~i~liDtPG~~df~~e~~----~~l~--~~D~~ilVvda~~g~~~~t~~~~~~~~~~~-~-p~ivviNKiD~~~~~~~~~ 339 (1043)
.+.|+||||......... ..+. ..|.+++|+|+..+.. .+.+.+.... + ..-+++||+|... ... .
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~~-~~g-~ 257 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDETT-SLG-S 257 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTCS-CCH-H
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCccc-chh-H
Confidence 999999999765443322 2222 3577899999987531 1222222222 2 2346779999763 222 3
Q ss_pred HHHHHHHhCC
Q psy11896 340 INQMRQKVGH 349 (1043)
Q Consensus 340 ~~~i~~~l~~ 349 (1043)
+..+...++.
T Consensus 258 ~~~~~~~~~~ 267 (296)
T 2px0_A 258 VFNILAESKI 267 (296)
T ss_dssp HHHHHHTCSC
T ss_pred HHHHHHHHCc
Confidence 3344444553
No 457
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.37 E-value=0.016 Score=62.02 Aligned_cols=60 Identities=12% Similarity=0.048 Sum_probs=41.0
Q ss_pred CCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHH----HHH---H-hcCCCeEEEEec-cCCCCC
Q psy11896 275 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQM---K-RYDVPCIAFINK-LDRLGA 334 (1043)
Q Consensus 275 PG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~----~~~---~-~~~~p~ivviNK-iD~~~~ 334 (1043)
.|+..+...+..++..+|++|+|||+.+.-......-+ ..+ . ..+.|++|+.|| -|..++
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 46788888999999999999999999864321122211 222 1 258899999997 477643
No 458
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=96.30 E-value=0.019 Score=57.37 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=93.3
Q ss_pred cccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCC
Q psy11896 893 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 972 (1043)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~ 972 (1043)
-+.||.+.+.++ +-.+--..+-+..|-..|.++|+.++...-..++..+.+.|+...+|.|...|.+.. .|++.+..+
T Consensus 82 ~l~nv~vVVtRy-fGGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~y~~ 159 (191)
T 2cve_A 82 GLDRVAVLVVRY-FGGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEETYTP 159 (191)
T ss_dssp TBCSEEEEEEEE-CCSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEEEEET
T ss_pred CCCcEEEEEEEE-eCCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceeccEEcC
Confidence 478888888875 212223467889999999999999999999999999999999999999999999988 999888865
Q ss_pred CcEEEEEEechhhhcCchHHHHhhcCCceEE
Q psy11896 973 DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEF 1003 (1043)
Q Consensus 973 ~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~ 1003 (1043)
.-..+...+|..+.-.|...|+..|+|++.+
T Consensus 160 ~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 160 EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 3378889999999889999999999999854
No 459
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.26 E-value=0.0058 Score=70.35 Aligned_cols=121 Identities=21% Similarity=0.127 Sum_probs=70.9
Q ss_pred cCeeEEEEeCCCCcchHHHHHHH---h---hhcCEEEEEEeCCCCCchhHHHHHHHHHhcCC-C-EEEEEecCCCCCCCH
Q psy11896 48 KDHNINIIDTPGHVDFTVEVERA---L---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-P-CIAFINKLDRLGADP 119 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~~~~~~~~~---~---~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~-p-iilvlNKiDl~~~~~ 119 (1043)
.++.+.|+||||........... + ..+|.+++|+|+..+. ........+. ..+ | ..+|+||+|... ..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~-~~ 254 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSA-KG 254 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCS-TT
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCcc-ch
Confidence 56789999999987533222221 2 2589999999997653 2222233332 236 6 889999999853 22
Q ss_pred HHHHHHHHHhhhhccccccccC--CCCccceeeeeeeecccCC-cchHHHHHHhhcc
Q psy11896 120 YRVINQMRQKTSRWISNESLSE--HKPIEYIRNIGISAHIDSG-KTTLTERILFYTG 173 (1043)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~l~~--~~~~~~~~ii~iSa~~g~G-i~~L~~~l~~~l~ 173 (1043)
...++ +...++.-+...+... .....|.+..++|+..|.| +..|++.+....+
T Consensus 255 g~~l~-~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~ 310 (432)
T 2v3c_C 255 GGALS-AVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD 310 (432)
T ss_dssp HHHHH-HHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC
T ss_pred HHHHH-HHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33333 3333322111111111 1112455667899999999 8888887765543
No 460
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=96.26 E-value=0.02 Score=52.09 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=47.7
Q ss_pred ccEEEEEEecCeecCCCEEEecCCC-cEEEeceEEEeccCCeeecCeecCCCEEEE--ccC--ccccCcEEe
Q psy11896 515 GQLTYMRCYQGKLRKGEMIYNVRTD-KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV--DCASGDTFV 581 (1043)
Q Consensus 515 G~i~~~RV~sGtl~~gd~v~~~~~~-~~~ki~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~Gdtl~ 581 (1043)
|.+..+||.+|+|++|+.| +.+ ...+|.+|. .+.+++++|.+||-|++ .|. +...||+|.
T Consensus 48 gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE----~~~e~v~eA~~GdnVai~Ikg~~~~I~~GdVLy 112 (116)
T 1xe1_A 48 KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIE----RNREKVEFAIAGDRIGISIEGKIGKVKKGDVLE 112 (116)
T ss_dssp EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEE----ETTEEESEEETTCEEEEEEESCCCCCCTTCEEE
T ss_pred CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEE----ECCcCcCCcCCCCEEEEEEECCccccCCCcEEE
Confidence 7789999999999999999 333 456677776 45678999999999985 454 567788876
No 461
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.24 E-value=0.005 Score=67.69 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=54.2
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh----cCCCeE-EEEeccCCCCCCHHHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPCI-AFINKLDRLGADPYRV 339 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~----~~~p~i-vviNKiD~~~~~~~~~ 339 (1043)
+++.+.+||||+..... .+..++..+|.+|+|+.+...-...+...++.+.. .+++++ +|+|+.+.. +.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 35899999999865432 23456789999999998765333444445555543 345555 899999842 45
Q ss_pred HHHHHHHhCCCce
Q psy11896 340 INQMRQKVGHNAA 352 (1043)
Q Consensus 340 ~~~i~~~l~~~~~ 352 (1043)
++++.+.++....
T Consensus 229 ~~~~~~~~g~~v~ 241 (307)
T 3end_A 229 VDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCCce
Confidence 6677777775443
No 462
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.23 E-value=0.0059 Score=65.59 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=48.6
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhc--CCCeEEEEeccCCC
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRL 332 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~--~~p~ivviNKiD~~ 332 (1043)
+.+.+.+||||+.. ...+..++..+|.+|+++.....-......+.+.+... +.++.+|+|+.+..
T Consensus 143 ~~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 35789999999965 34567788899999999998754444445555555555 45788999999544
No 463
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=96.17 E-value=0.017 Score=58.93 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=94.3
Q ss_pred cccceEEEEecCccccCCCChhHHHHHHHHHHHHHHHhcCceeecceEEEEEEecCcchhhhhhHhhccCeEEeccccCC
Q psy11896 893 RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD 972 (1043)
Q Consensus 893 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~llEP~~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~ 972 (1043)
-+.||.+.+.++ +-.+--..+-+..|-..|.++|+.++...-..++..+.|.|+...+|.|...|.+..+.|++.+..+
T Consensus 94 ~l~nv~vVVtRy-fGGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~ 172 (217)
T 1vi7_A 94 GVGEITAVVVRY-YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQA 172 (217)
T ss_dssp TCCSEEEECCEE-CCSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEESS
T ss_pred CCCCEEEEEEEE-eCCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEceEecC
Confidence 377888887775 2222335678999999999999999999999999999999999999999999999999999998864
Q ss_pred CcEEEEEEechhhhcCchHHHHhhcCCceEE
Q psy11896 973 DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEF 1003 (1043)
Q Consensus 973 ~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~~ 1003 (1043)
...+...+|..+.-.|...|+..|+|++.+
T Consensus 173 -~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~ 202 (217)
T 1vi7_A 173 -FVLLRVALPAAKVAEFSAKLADFSRGSLQL 202 (217)
T ss_dssp -SEEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred -CEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 477888999998888999999999999853
No 464
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.92 E-value=0.015 Score=66.39 Aligned_cols=159 Identities=11% Similarity=0.005 Sum_probs=91.3
Q ss_pred eeeeeecccccccCCccccCCChhhhh-----hcCCccccceEEEEecCe-eEEEEeCCCCcc---hHHHHHHH--hhhc
Q psy11896 6 KIIHIKQEQVRGKDNVGAVMDSMELER-----QRGITIQSAATYTLWKDH-NINIIDTPGHVD---FTVEVERA--LRVL 74 (1043)
Q Consensus 6 ~i~~~~~~~gk~s~~~~~~~d~~~~e~-----~~G~T~~~~~~~~~~~~~-~i~liDTPG~~~---~~~~~~~~--~~~a 74 (1043)
..+.|..++||+|.......-..+.+- ...+|+. ...+..... +++++|+||+.. ....+... +...
T Consensus 72 valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 334499999999984433331111110 0112221 122232222 689999999853 12233332 3344
Q ss_pred CEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCC---------CC-CHHHHHHHHHHhhhhccccccccCCCC
Q psy11896 75 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL---------GA-DPYRVINQMRQKTSRWISNESLSEHKP 144 (1043)
Q Consensus 75 D~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~---------~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~ 144 (1043)
|..++ +++.. .+.+...+.+.+...++|+++|+||.|+. +. ...++.+.+.+.....+.. ..
T Consensus 150 ~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~------~g 221 (413)
T 1tq4_A 150 DFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE------NG 221 (413)
T ss_dssp SEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH------TT
T ss_pred CCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh------cC
Confidence 66665 78754 56778888888888899999999999963 11 2333444443321100000 00
Q ss_pred ccceeeeeeee--cccCCcchHHHHHHhhccc
Q psy11896 145 IEYIRNIGISA--HIDSGKTTLTERILFYTGR 174 (1043)
Q Consensus 145 ~~~~~ii~iSa--~~g~Gi~~L~~~l~~~l~~ 174 (1043)
..+..++++|+ .++.|+++|.+.+...+++
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 12346789999 6777899999999888875
No 465
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.87 E-value=0.013 Score=67.39 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=23.1
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.++--|+|+|..++|||||+|+|+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35678999999999999999999865
No 466
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=95.72 E-value=0.0025 Score=69.40 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=52.0
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCC----CcchHHHH-------------HH--HHHH----hcC-CC
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----GVQSQTLT-------------VN--RQMK----RYD-VP 321 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~----g~~~~t~~-------------~~--~~~~----~~~-~p 321 (1043)
.+.+.|||||+.. ...+..++..+|.+|+++.... ++..-... +| +.+. ..+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 4789999999975 5677888999999999998862 11111111 21 2222 224 66
Q ss_pred eEEEEeccCCCC-CCHHHHHHHHHH---HhCC
Q psy11896 322 CIAFINKLDRLG-ADPYRVINQMRQ---KVGH 349 (1043)
Q Consensus 322 ~ivviNKiD~~~-~~~~~~~~~i~~---~l~~ 349 (1043)
+.+|+|+.|... ....+..+.+.+ +++.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 789999999765 334444444444 3664
No 467
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.24 E-value=0.015 Score=61.94 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=47.7
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcC---------CCeEEEEeccCC
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD---------VPCIAFINKLDR 331 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~---------~p~ivviNKiD~ 331 (1043)
.+.+.+||||+... ..+..++..+|.+|+|+++...-...+...++.+...+ ....+|+|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 68999999999544 57778889999999999987544445555555554433 456799999984
No 468
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.18 E-value=0.07 Score=61.11 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=43.6
Q ss_pred cCeeEEEEeCCCCcc----hHHHHH--HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCCC
Q psy11896 48 KDHNINIIDTPGHVD----FTVEVE--RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 116 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~----~~~~~~--~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~ 116 (1043)
.++.+.|+||||... +..+.. .....+|.++||+|+..+ .........+.....+..+|+||+|...
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG--QQAYNQALAFKEATPIGSIIVTKLDGSA 253 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHSCTTEEEEEECCSSCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc--hhHHHHHHHHHhhCCCeEEEEECCCCcc
Confidence 357899999999753 222222 223357999999999864 2333344444444445779999999853
No 469
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.11 E-value=0.019 Score=61.86 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=35.9
Q ss_pred cCEEEEEEeCC-CCCchhHHHHHHHHHhcCCCEEEEEecCCCCC
Q psy11896 74 LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 116 (1043)
Q Consensus 74 aD~iIlVvDa~-~~~~~~~~~~~~~l~~~~~piilvlNKiDl~~ 116 (1043)
++++++++|.. .++...+..+++.+... +++|+|+||+|...
T Consensus 112 al~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp CCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred eeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 57889999954 78888998888888776 89999999999875
No 470
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.04 E-value=0.044 Score=59.93 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=73.0
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccc--cchhh-hhhcCceEeeeeEE-EE-----------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVM--DSMEL-ERQRGITIQSAATY-TL----------- 263 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~--d~~~~-e~~~giTi~~~~~~-~~----------- 263 (1043)
-..++++|+.|+|||||+..|............+.+.+.+ ... +.... ....++.+...... ..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~-r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF-RAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS-CHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc-chhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 3579999999999999999998542111100011221110 000 00000 01223433222111 00
Q ss_pred --ecCeeEEEEcCCCCCCchHHHHH-------Hh-----HhcCeEEEEEeCCCCcchHHHHHHHHHH-hcCCCeEEEEec
Q psy11896 264 --WKDHNINIIDTPGHVDFTVEVER-------AL-----RVLDGAILVLCAVGGVQSQTLTVNRQMK-RYDVPCIAFINK 328 (1043)
Q Consensus 264 --~~~~~i~liDtPG~~df~~e~~~-------~l-----~~~D~~ilVvda~~g~~~~t~~~~~~~~-~~~~p~ivviNK 328 (1043)
..+....++||.|...+...... ++ ...+-+++|+|+..|...... .+... ..++ .+++++|
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~iiiTh 255 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTK 255 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEEC
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEEEeC
Confidence 12345779999997654332211 11 235566999998877655543 23333 3344 5678899
Q ss_pred cCCCCCCHHHHHHHHHHHhCCC
Q psy11896 329 LDRLGADPYRVINQMRQKVGHN 350 (1043)
Q Consensus 329 iD~~~~~~~~~~~~i~~~l~~~ 350 (1043)
+|-. +.....+ .+...++..
T Consensus 256 lD~~-~~~g~~l-~~~~~~~~p 275 (302)
T 3b9q_A 256 LDGS-ARGGCVV-SVVEELGIP 275 (302)
T ss_dssp CSSC-SCTHHHH-HHHHHHCCC
T ss_pred CCCC-CccChhe-ehHHHHCCC
Confidence 9875 3333333 344445543
No 471
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.89 E-value=0.1 Score=56.74 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=44.4
Q ss_pred cCeeEEEEeCCCCcc--hHHHHH------HHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCC-EEEEEecCCCC
Q psy11896 48 KDHNINIIDTPGHVD--FTVEVE------RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRL 115 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~--~~~~~~------~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~p-iilvlNKiDl~ 115 (1043)
.++.+.|+||||... ...... .....+|.+++|+|+..+ .......+.+.. ..| ..+|+||+|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 567899999999877 432222 245578999999998753 333333443333 467 77999999975
No 472
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.44 E-value=0.061 Score=60.12 Aligned_cols=147 Identities=18% Similarity=0.169 Sum_probs=72.8
Q ss_pred eeeEEEEEeecCCcccHHhHHhcccCCceeeeeecCCccccccc--cchhh-hhhcCceEeeeeEE-E------------
Q psy11896 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVM--DSMEL-ERQRGITIQSAATY-T------------ 262 (1043)
Q Consensus 199 ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~~~~~v~~~~~~~~~~--d~~~~-e~~~giTi~~~~~~-~------------ 262 (1043)
-..++++|+.|+|||||+..|............+.+.+.+ +.. +.... ....++.+...... .
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~-r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF-RAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS-CHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc-ccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 4579999999999999999998542211100011221110 000 00000 01223332211100 0
Q ss_pred -EecCeeEEEEcCCCCCCchHHHHH-------Hh-----HhcCeEEEEEeCCCCcchHHHHHHHHHH-hcCCCeEEEEec
Q psy11896 263 -LWKDHNINIIDTPGHVDFTVEVER-------AL-----RVLDGAILVLCAVGGVQSQTLTVNRQMK-RYDVPCIAFINK 328 (1043)
Q Consensus 263 -~~~~~~i~liDtPG~~df~~e~~~-------~l-----~~~D~~ilVvda~~g~~~~t~~~~~~~~-~~~~p~ivviNK 328 (1043)
...++...++||.|...+...... ++ ...+-+++|+|+..|...... .+... ..++ .+++++|
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~-t~iiiTh 312 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTK 312 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEES
T ss_pred HHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCC-eEEEEec
Confidence 012445789999997654332211 11 235566999998877655433 22222 2343 5678999
Q ss_pred cCCCCCCHHHHHHHHHHHhCCCc
Q psy11896 329 LDRLGADPYRVINQMRQKVGHNA 351 (1043)
Q Consensus 329 iD~~~~~~~~~~~~i~~~l~~~~ 351 (1043)
+|-. +..-..+ .+...++..+
T Consensus 313 lD~~-~~gG~~l-si~~~~~~pI 333 (359)
T 2og2_A 313 LDGS-ARGGCVV-SVVEELGIPV 333 (359)
T ss_dssp CTTC-SCTHHHH-HHHHHHCCCE
T ss_pred Cccc-ccccHHH-HHHHHhCCCE
Confidence 9865 3333333 3444455433
No 473
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.32 E-value=0.1 Score=55.44 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=56.2
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh------cCCCeE-EEEeccCCCCCCHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR------YDVPCI-AFINKLDRLGADPY 337 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~------~~~p~i-vviNKiD~~~~~~~ 337 (1043)
..+.+.+||||+... .....++..+|.+|+++.+...-...+...++.+.. .+++++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCC--HHHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCC--HHHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 468899999999754 345667889999999999875433333333333322 256664 89999987543345
Q ss_pred HHHHHHHHHhCCC
Q psy11896 338 RVINQMRQKVGHN 350 (1043)
Q Consensus 338 ~~~~~i~~~l~~~ 350 (1043)
+..+.+.+.++..
T Consensus 188 ~~~~~l~~~~~~~ 200 (257)
T 1wcv_1 188 QVEAQLRAHFGEK 200 (257)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHcccc
Confidence 5677777777643
No 474
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.27 E-value=0.14 Score=58.50 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=43.6
Q ss_pred cCeeEEEEeCCCCcc------hHHHHHHHhh--hcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEEEEEecCCCC
Q psy11896 48 KDHNINIIDTPGHVD------FTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 115 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~------~~~~~~~~~~--~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~piilvlNKiDl~ 115 (1043)
.++.+.|+||||... +..++....+ ..|.++||+|+..+ .........+.+.-.+..+++||+|..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEeccccc
Confidence 367899999999644 3444333222 45899999999854 223334444444445688999999975
No 475
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.18 E-value=0.1 Score=55.64 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=51.0
Q ss_pred CeeEEEEcCCCCCCchHH-HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh----cCCCe-EEEEeccCCCCCCHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPC-IAFINKLDRLGADPYRV 339 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e-~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~----~~~p~-ivviNKiD~~~~~~~~~ 339 (1043)
.+.+.+|||||......- .......+|.+|+++.+...-...+....+.+.. .+++. -+|+|+.+... ..+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~--~~~~ 192 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN--EYEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC--CHHH
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch--hHHH
Confidence 588999999996432111 1112257999999998864333333333444332 25564 58899987432 2466
Q ss_pred HHHHHHHhCCCc
Q psy11896 340 INQMRQKVGHNA 351 (1043)
Q Consensus 340 ~~~i~~~l~~~~ 351 (1043)
.+.+.+.++...
T Consensus 193 ~~~l~~~~~~~v 204 (269)
T 1cp2_A 193 LDAFAKELGSQL 204 (269)
T ss_dssp HHHHHHHHTCCE
T ss_pred HHHHHHHcCCcc
Confidence 777877777543
No 476
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=93.83 E-value=0.015 Score=63.49 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=37.9
Q ss_pred cccceeeccccccccccchhhhhhcccceecccCCC-CCceeeeh
Q psy11896 795 LEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGK-DDWVTIYA 838 (1043)
Q Consensus 795 lEP~~~~ei~~p~~~~g~v~~~l~~rrg~~~~~~~~-~~~~~~~~ 838 (1043)
+||++.++|.+|++|+|.|+++|++|||.+..++.. ++|..+.+
T Consensus 124 lEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~ 168 (332)
T 3e3x_A 124 MEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDF 168 (332)
T ss_dssp EEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEE
T ss_pred ECcEEEEEEEECHHHHHHHHHHHHhhcccccCceECCCCeEEEEE
Confidence 059999999999999999999999999999998766 46766654
No 477
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.45 E-value=0.14 Score=55.33 Aligned_cols=84 Identities=12% Similarity=0.011 Sum_probs=50.5
Q ss_pred CeeEEEEcCCCCCCchHH-HHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHh----cCCCe-EEEEeccCCCCCCHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPC-IAFINKLDRLGADPYRV 339 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e-~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~----~~~p~-ivviNKiD~~~~~~~~~ 339 (1043)
.+.+.||||||......- .......+|.+++++.+...-...+..+.+.+.. .+.++ -+|+|+.+.. ...+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~~ 195 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--REDEL 195 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--THHHH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch--hHHHH
Confidence 689999999996432111 1122357999999998764333333333333322 35664 5788998642 33566
Q ss_pred HHHHHHHhCCCc
Q psy11896 340 INQMRQKVGHNA 351 (1043)
Q Consensus 340 ~~~i~~~l~~~~ 351 (1043)
++.+.+.++...
T Consensus 196 ~~~l~~~~g~~~ 207 (289)
T 2afh_E 196 IIALANKLGTQM 207 (289)
T ss_dssp HHHHHHHHTSCE
T ss_pred HHHHHHHcCccc
Confidence 777877777543
No 478
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.21 E-value=0.18 Score=53.58 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=58.6
Q ss_pred cCeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCe-EEEEeccCCCCCCHHHHHHHH
Q psy11896 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQM 343 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~~~~~~~~i 343 (1043)
+.+.+.+||||+... ..+..++..+|.+|+|+.+...-...+...++.+...+.+. -+|+|+.|.... ...++.+
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~--~~~~~~~ 184 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI--EMAKNEI 184 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH--HHHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc--cchHHHH
Confidence 357899999998655 66777889999999999887554455666666666666654 488999996532 2456667
Q ss_pred HHHhCCC
Q psy11896 344 RQKVGHN 350 (1043)
Q Consensus 344 ~~~l~~~ 350 (1043)
.+.++..
T Consensus 185 ~~~~~~~ 191 (263)
T 1hyq_A 185 EAILEAK 191 (263)
T ss_dssp HHHTTSC
T ss_pred HHHhCCC
Confidence 6666643
No 479
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=93.08 E-value=0.36 Score=42.60 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=57.8
Q ss_pred EEeeeecCC-ccEEEEEEecCeecCCCEEEecCCCcE---EEeceEEEeccCCeeecCeecCCCEEEEc--cC-ccccCc
Q psy11896 506 AFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKK---VRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV-DCASGD 578 (1043)
Q Consensus 506 V~K~~~d~~-G~i~~~RV~sGtl~~gd~v~~~~~~~~---~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl-~~~~Gd 578 (1043)
|-+++..+. |.+|=++|.+|.++.+..+.+.+.+.- -++.+|- +...+|+++.+|.=|+|. +. |.+.||
T Consensus 11 Vr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLk----r~KddV~EV~~G~ECGi~l~~~~dik~GD 86 (99)
T 1d1n_A 11 VRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK----RYKDDVREVAQGYECGLTIKNFNDIKEGD 86 (99)
T ss_dssp ECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEE----CSSSCCSCCBTTCEEEEECTTCSSCSSCS
T ss_pred EEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhc----ccccccceECCCcEEEEEEcCcCCCCCCC
Confidence 444444445 999999999999999999999988743 3677776 667789999999999874 44 788999
Q ss_pred EEe
Q psy11896 579 TFV 581 (1043)
Q Consensus 579 tl~ 581 (1043)
.|-
T Consensus 87 ~Ie 89 (99)
T 1d1n_A 87 VIE 89 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 480
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.01 E-value=0.028 Score=66.87 Aligned_cols=91 Identities=14% Similarity=0.043 Sum_probs=55.8
Q ss_pred eeeeecccccccCCccccCCChhhhhhcCCccccceEEEEe-------cCeeEEEEeCCCCcchHH------HHHHHhhh
Q psy11896 7 IIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLW-------KDHNINIIDTPGHVDFTV------EVERALRV 73 (1043)
Q Consensus 7 i~~~~~~~gk~s~~~~~~~d~~~~e~~~G~T~~~~~~~~~~-------~~~~i~liDTPG~~~~~~------~~~~~~~~ 73 (1043)
.+.|-+++||++.+-+...... .-..+|+|++...+.+.| .+..+.|+||||+.+... ...-++..
T Consensus 42 aivG~pnvGKStLiN~L~g~~~-~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~ 120 (592)
T 1f5n_A 42 AIVGLYRTGKSYLMNKLAGKKK-GFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAV 120 (592)
T ss_dssp EEEEBTTSSHHHHHHHHTTCSS-CSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHhHcCCCC-ccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHHHHHH
Confidence 3449999999887444433321 115677777766666554 467899999999974221 11111111
Q ss_pred --cCEEEEEEeCCCCCchhHHHHHHHHHh
Q psy11896 74 --LDGAILVLCAVGGVQSQTLTVNRQMKR 100 (1043)
Q Consensus 74 --aD~iIlVvDa~~~~~~~~~~~~~~l~~ 100 (1043)
++ ++|+|+..++..++..++..+..
T Consensus 121 llss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 121 LLSS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHCS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HhcC--eEEEECCCCccHHHHHHHHHHHH
Confidence 33 67778777788888776665544
No 481
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.87 E-value=0.25 Score=50.06 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=48.5
Q ss_pred CeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc-----CCCEEEEEecCCCC
Q psy11896 49 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-----DVPCIAFINKLDRL 115 (1043)
Q Consensus 49 ~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~-----~~piilvlNKiDl~ 115 (1043)
.+.+.|+|||+.. .......+..+|.+|++++....- .......+.+... +.++.+|+||+|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 4679999999876 345667788899999999987654 5555566666544 35778999999954
No 482
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.76 E-value=0.22 Score=51.91 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=57.4
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCC-eEEEEeccCCCCCCHHHHHHHHH
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPYRVINQMR 344 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~i~ 344 (1043)
.+.+.+||||+... ..+..++..+|.+|+|+.+...-...+...++.+.+.+.+ .-+|+|+.|..... ..++.+.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~ 186 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAAE 186 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHHH
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHHH
Confidence 57899999999654 5677788999999999988765455566666666666665 45889999975432 2345555
Q ss_pred HHhCCC
Q psy11896 345 QKVGHN 350 (1043)
Q Consensus 345 ~~l~~~ 350 (1043)
+.++..
T Consensus 187 ~~~~~~ 192 (237)
T 1g3q_A 187 DVMEVP 192 (237)
T ss_dssp HHHCSC
T ss_pred HHhCcc
Confidence 666643
No 483
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.99 E-value=0.33 Score=51.60 Aligned_cols=67 Identities=9% Similarity=-0.085 Sum_probs=47.0
Q ss_pred cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCC
Q psy11896 48 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDR 114 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl 114 (1043)
..+.+.|+|||+...........+..+|.+|+|+.............++.+...+.+++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46789999999876433222233446899999998775443444555666777788977 99999984
No 484
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.80 E-value=0.33 Score=54.04 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=29.5
Q ss_pred hHhcCeEEEEEeCCCCcchHHHHH---HHHHHhcCCCeEEEEeccCCCC
Q psy11896 288 LRVLDGAILVLCAVGGVQSQTLTV---NRQMKRYDVPCIAFINKLDRLG 333 (1043)
Q Consensus 288 l~~~D~~ilVvda~~g~~~~t~~~---~~~~~~~~~p~ivviNKiD~~~ 333 (1043)
+..+|.+++| ||.... .....+ +..+...++|+++|+||+|+..
T Consensus 128 ~anvD~v~iv-~a~~P~-~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPE-LSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EECCCEEEEE-EESTTT-CCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HhcCCEEEEE-EeCCCC-CCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 4678888865 555432 222233 3344568999999999999874
No 485
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.64 E-value=0.68 Score=51.51 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=47.4
Q ss_pred cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCC-C---------HHHHHHHHHHHhCCCceeeeecc
Q psy11896 291 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGA-D---------PYRVINQMRQKVGHNAAFLQIPI 358 (1043)
Q Consensus 291 ~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~-~---------~~~~~~~i~~~l~~~~~~~~~p~ 358 (1043)
.+++++|.-...-....+...+..+.+.++|+. +|+|++..... . +...++++.+.++... ...+|+
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKV-IAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSE-EEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 477888888887777788888999999999985 78899987532 1 3445667777775432 234443
No 486
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=90.98 E-value=0.11 Score=43.88 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=54.1
Q ss_pred EEEEEEecCcchhhhhhHhhccCeEEeccccCCCcEEEEEEechhhhcCchHHHHhhcCCceE
Q psy11896 940 MSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGE 1002 (1043)
Q Consensus 940 ~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~~~~lr~~t~G~~~ 1002 (1043)
....+.|+...+|+|...|.+..+.|.+.+..+. ..+...+|..+.-.|...|+.+|+|++.
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~~-V~l~v~vp~~~~~~~~~~L~d~t~G~~~ 69 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQAF-VLLRVALPAAKVAEFSAKLADFSGGSLQ 69 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEEE-EEEEEEECC-CC-CHHHHHHHHHTTCCC
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEcccccCe-EEEEEEECHHHHHHHHHHHHHHhCCEEE
Confidence 3567899999999999999999999999998544 8899999999999999999999999974
No 487
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.90 E-value=1.1 Score=45.87 Aligned_cols=87 Identities=8% Similarity=0.048 Sum_probs=56.4
Q ss_pred cCeeEEEEcCCCCCCc--hH--HHHHHhHh-cCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCCCHHH
Q psy11896 265 KDHNINIIDTPGHVDF--TV--EVERALRV-LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYR 338 (1043)
Q Consensus 265 ~~~~i~liDtPG~~df--~~--e~~~~l~~-~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~ 338 (1043)
+++.+.+|||||...- .. ........ .+.+|+|+.+..+-..++...++.+...+++++ +|+|+.|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 3578999999986431 10 11111122 245888888865555556666676777788865 789999976444567
Q ss_pred HHHHHHHHhCCCc
Q psy11896 339 VINQMRQKVGHNA 351 (1043)
Q Consensus 339 ~~~~i~~~l~~~~ 351 (1043)
..+.+.+.++...
T Consensus 187 ~~~~l~~~~~~~v 199 (224)
T 1byi_A 187 YMTTLTRMIPAPL 199 (224)
T ss_dssp HHHHHHHHSSSCE
T ss_pred HHHHHHHHcCCCE
Confidence 7788888777544
No 488
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.51 E-value=0.82 Score=50.27 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=42.8
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCCC-C---------HHHHHHHHHHHhCC
Q psy11896 292 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGA-D---------PYRVINQMRQKVGH 349 (1043)
Q Consensus 292 D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~-~---------~~~~~~~i~~~l~~ 349 (1043)
+++++|+-+..-....+...+..+.+.++|+. +|+|++..... . +.+.++++.+.++.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 291 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSD 291 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCC
Confidence 48888888877677788888999999999985 78899986532 1 23456667776653
No 489
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.26 E-value=0.19 Score=54.75 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=55.8
Q ss_pred cCCCEEEEEecCCCCCCCHHHHHHHHHHhhhhccccccccCCCCccceeeeeeeecccCCcchHHHHHHhhccccccccc
Q psy11896 101 YDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHE 180 (1043)
Q Consensus 101 ~~~piilvlNKiDl~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ii~iSa~~g~Gi~~L~~~l~~~l~~~~~~~~ 180 (1043)
.+.|+ ++++|-|.+. +..++..++. ..+++.++..+..++..|...+...+.+....+.
T Consensus 79 ~~~P~-IIltrg~~~p---eelie~A~~~-----------------~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~ 137 (314)
T 1ko7_A 79 PETPA-IIVTRDLEPP---EELIEAAKEH-----------------ETPLITSKIATTQLMSRLTTFLEHELARTTSLHG 137 (314)
T ss_dssp TTCCC-EEECTTCCCC---HHHHHHHHHT-----------------TCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCE-EEEeCCCCCC---HHHHHHHHHC-----------------CCeEEEECCchhHHHHHHHHHHHHhhccceeeeE
Confidence 45666 6678888762 3333333321 2467778888888888887777665443222211
Q ss_pred cccccccccccCCCCccceeeEEEEEeecCCcccHHhHHhcc
Q psy11896 181 TSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ir~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
.. . .. .-+-+++.|+.|+||||++..|+..
T Consensus 138 ~~-v----------~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 138 VL-V----------DV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EE-E----------EE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EE-E----------EE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 11 0 00 1256999999999999999999854
No 490
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.17 E-value=0.44 Score=48.76 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=46.7
Q ss_pred cCeeEEEEeCCCC-cchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhc-CCCEEEEEecCCCCC
Q psy11896 48 KDHNINIIDTPGH-VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-DVPCIAFINKLDRLG 116 (1043)
Q Consensus 48 ~~~~i~liDTPG~-~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~-~~piilvlNKiDl~~ 116 (1043)
..+.+.++|||+. ... .+...+..+|.+|++++....-.......++.+... +.++.+|+|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 3567999999987 443 344577889999999987632223334455556553 678889999999653
No 491
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.08 E-value=0.51 Score=50.54 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=51.3
Q ss_pred CeeEEEEcCCCCCCchHHHHHHhHhcCeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCC
Q psy11896 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLG 333 (1043)
Q Consensus 266 ~~~i~liDtPG~~df~~e~~~~l~~~D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~ 333 (1043)
.+.+.|||||+..... +.......+|.+|+|+.+...-........+.+...+.+++ +|+|++|...
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 4789999999975543 23334578999999999988777777777888887888877 8899999653
No 492
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.00 E-value=0.81 Score=48.32 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=49.6
Q ss_pred cCeeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHh------cCCCEE-EEEecCCCCCCCHH
Q psy11896 48 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR------YDVPCI-AFINKLDRLGADPY 120 (1043)
Q Consensus 48 ~~~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~------~~~pii-lvlNKiDl~~~~~~ 120 (1043)
..+.+.|+|||+..... ....+..+|.+|+|++....-........+.+.. .+.+++ +|+|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 46789999999876432 3456678999999999763211222223333322 256664 89999986432233
Q ss_pred HHHHHHHHhhh
Q psy11896 121 RVINQMRQKTS 131 (1043)
Q Consensus 121 ~~~~~l~~~~~ 131 (1043)
...+.+++.++
T Consensus 188 ~~~~~l~~~~~ 198 (257)
T 1wcv_1 188 QVEAQLRAHFG 198 (257)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHcc
Confidence 44455555443
No 493
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=89.93 E-value=0.65 Score=53.07 Aligned_cols=112 Identities=18% Similarity=0.109 Sum_probs=57.4
Q ss_pred cceeeEEEEEeecCCcccHHhHHhcccCCce---eeee---ecCCccccccccchhhhhhcCceEeeeeEEEEe---cCe
Q psy11896 197 EYIRNIGISAHIDSGKTTLTERILFYTGRIS---EMHE---VRGKDNVGAVMDSMELERQRGITIQSAATYTLW---KDH 267 (1043)
Q Consensus 197 ~~ir~i~ivG~~~~GKTTL~~~Ll~~~~~~~---~~~~---v~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~ 267 (1043)
+++.-|+|+|..++|||+|+|.|+...+... -.+. ...|- .+.. .......||-+.+....... .+.
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF---~~~~-~~~~~TkGIWmw~~p~~~~~~~g~~~ 140 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGF---SWRG-GSERETTGIQIWSEIFLINKPDGKKV 140 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSS---CCCC-SSSCCCCSEEEESSCEEEECTTSCEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCc---eeCC-CCCCcCceEEEecCcccccCCCCCee
Confidence 4578899999999999999998764321100 0000 00110 0100 01223556666555443332 235
Q ss_pred eEEEEcCCCCCCch-----HHHHHHh--HhcCeEEEEEeCCCCcchHHHHHHHH
Q psy11896 268 NINIIDTPGHVDFT-----VEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQ 314 (1043)
Q Consensus 268 ~i~liDtPG~~df~-----~e~~~~l--~~~D~~ilVvda~~g~~~~t~~~~~~ 314 (1043)
.+.|+||.|..+-. ...+.++ -.++..|+=+. ..+..+....+..
T Consensus 141 ~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~--~~i~~~~L~~L~~ 192 (457)
T 4ido_A 141 AVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLS--QNVQEDDLQHLQL 192 (457)
T ss_dssp EEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEE--SSCCHHHHHHHHH
T ss_pred EEEEEeccCCCCcccCccccHHHHHHHHHHhhheeeccc--ccCCHHHHHHHHH
Confidence 79999999965421 1233333 34555554333 3344444444443
No 494
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.75 E-value=0.44 Score=51.91 Aligned_cols=48 Identities=25% Similarity=0.233 Sum_probs=36.7
Q ss_pred HhHhcCeEEEEEeCCCCcchHH--HHHHHHHHhcCCCeEEEEeccCCCCC
Q psy11896 287 ALRVLDGAILVLCAVGGVQSQT--LTVNRQMKRYDVPCIAFINKLDRLGA 334 (1043)
Q Consensus 287 ~l~~~D~~ilVvda~~g~~~~t--~~~~~~~~~~~~p~ivviNKiD~~~~ 334 (1043)
.+..+|.+++|+|+..+..... ...+..+...++|+++|+||+|+...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 5788999999999997655544 22334445689999999999999854
No 495
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.58 E-value=1.5 Score=48.46 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=45.0
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHHhcCCCeE-EEEeccCCCC---CC---------HHHHHHHHHHHhCCCceeeeecc
Q psy11896 292 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLG---AD---------PYRVINQMRQKVGHNAAFLQIPI 358 (1043)
Q Consensus 292 D~~ilVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~---~~---------~~~~~~~i~~~l~~~~~~~~~p~ 358 (1043)
+.+++|..+..-....+...+..+.+.++|+. +|+|++.-.. .+ ....++++.+.+........+|.
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl 302 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPL 302 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecC
Confidence 46788887776666778888999999999975 7889987421 11 13457777777764233334453
No 496
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=89.09 E-value=1.3 Score=40.53 Aligned_cols=71 Identities=17% Similarity=0.297 Sum_probs=55.3
Q ss_pred EEEeeeecCCcc---EEEEEEecCeecCCCEEEecCCCcE---EEeceEEEeccCCeeecCeecCCCEEEEc--cC--cc
Q psy11896 505 LAFKLEAGKFGQ---LTYMRCYQGKLRKGEMIYNVRTDKK---VRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV--DC 574 (1043)
Q Consensus 505 ~V~K~~~d~~G~---i~~~RV~sGtl~~gd~v~~~~~~~~---~ki~~l~~~~g~~~~~v~~a~aGdIv~i~--gl--~~ 574 (1043)
.+|++... |. +|=++|.+|.++.+..+.+.+.+.- -++.+|- +...+|+++.+|.=|+|. +. |.
T Consensus 17 ~vF~isk~--g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLk----rfKdDVkEV~~G~ECGi~l~~fniDi 90 (120)
T 2crv_A 17 ATFTVTEG--KKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLK----HHKDDISVIKTGMDCGLSLDEEKVEF 90 (120)
T ss_dssp EEEEEEET--TEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEE----SSSSCCSEECTTCEEEEECSCTTSCC
T ss_pred EEEEeCCC--CceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhc----ccccccceecCCCEEEEEEccCCCCC
Confidence 35554322 55 9999999999999999999987743 3677776 667789999999999974 33 67
Q ss_pred ccCcEEe
Q psy11896 575 ASGDTFV 581 (1043)
Q Consensus 575 ~~Gdtl~ 581 (1043)
+.||.|-
T Consensus 91 k~GDiIE 97 (120)
T 2crv_A 91 KPGDQVI 97 (120)
T ss_dssp CTTEEEE
T ss_pred CCCCEEE
Confidence 8999884
No 497
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.72 E-value=0.13 Score=51.40 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.0
Q ss_pred eEEEEEeecCCcccHHhHHhcccC
Q psy11896 201 NIGISAHIDSGKTTLTERILFYTG 224 (1043)
Q Consensus 201 ~i~ivG~~~~GKTTL~~~Ll~~~~ 224 (1043)
+++++|+.|+|||||+..|....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999986543
No 498
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.60 E-value=0.13 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.7
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
+.++|+|+.|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 56999999999999999999854
No 499
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.37 E-value=0.71 Score=49.40 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=47.3
Q ss_pred eeEEEEeCCCCcchHHHHHHHhhhcCEEEEEEeCCCCCchhHHHHHHHHHhcCCCEE-EEEecCCCC
Q psy11896 50 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL 115 (1043)
Q Consensus 50 ~~i~liDTPG~~~~~~~~~~~~~~aD~iIlVvDa~~~~~~~~~~~~~~l~~~~~pii-lvlNKiDl~ 115 (1043)
+.++|+|||+..... ........+|.+|+|+.+............+.+...+.+++ +|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 469999999976432 23334567899999999875544555666677777788876 899999963
No 500
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.26 E-value=0.15 Score=51.00 Aligned_cols=23 Identities=4% Similarity=0.200 Sum_probs=20.6
Q ss_pred eeEEEEEeecCCcccHHhHHhcc
Q psy11896 200 RNIGISAHIDSGKTTLTERILFY 222 (1043)
Q Consensus 200 r~i~ivG~~~~GKTTL~~~Ll~~ 222 (1043)
+.++|+|++|||||||++.|...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999854
Done!