RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11896
(1043 letters)
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 794 bits (2054), Expect = 0.0
Identities = 275/651 (42%), Positives = 390/651 (59%), Gaps = 17/651 (2%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGR---ISEMHEVRGKDNVGAVMDSMELERQR 251
+E RNIGI AHID+GKTT TERIL+YTGR I E HE G + MD ME E+ R
Sbjct: 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHE--G----ASQMDWMEQEQDR 59
Query: 252 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 311
GITI SAAT W+ H +NIIDTPGHVDFTVEVER+LRVLDGA+ VL A GV+ QT TV
Sbjct: 60 GITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV 119
Query: 312 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLI 371
RQ Y VP I F+NK+D+LGA+ ++ + ++ NAA +Q+PIG E + IIDL+
Sbjct: 120 WRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLV 179
Query: 372 QRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDD 431
+ K + LG + EIP D AE R LIE VAE + L E +L ++ IS +
Sbjct: 180 EMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSE 239
Query: 432 IKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY-AIENGQEDKKV 490
+K+AIR++T +F PVL GTA KNKGVQ +LDAV+DYLP+P +V +++V
Sbjct: 240 LKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEV 299
Query: 491 VLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVR 549
+ F ALAFK+ + G+LT+ R Y G + G + N K+ RV RL++
Sbjct: 300 IAKADDSA--EFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQ 357
Query: 550 LHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVN 608
+H+N ++++ V +GDI A G+ D +GDT + + N I LES+ +PV+ +S++ +
Sbjct: 358 MHANSRQEIDTVYSGDIAAAVGLKDTGTGDT-LCGEKNDIILESMEFPEPVIHLSVEPKS 416
Query: 609 NKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLG 668
D+D ++A+ + +EDPTFH D E+ + ++ GMGELHL+I RM++E+N +G
Sbjct: 417 KADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVG 476
Query: 669 KPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVP 728
P V+++ET +QSGG GQYG V P A EF + VG VP
Sbjct: 477 APMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAG--FEFENAIVGGVVP 534
Query: 729 KPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYE 788
+ ++P++ G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A +
Sbjct: 535 REYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAK 594
Query: 789 EGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839
+ ILEP+M V I P E+ G ++ VT R G + G E + + + A
Sbjct: 595 KCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY 645
Score = 205 bits (524), Expect = 9e-56
Identities = 62/107 (57%), Positives = 77/107 (71%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
+ MD ME E+ RGITI SAAT W+ H +NIIDTPGHVDFTVEVER+LRVLDGA+ VL
Sbjct: 48 SQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLD 107
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
A GV+ QT TV RQ Y VP I F+NK+D+LGA+ ++ + +
Sbjct: 108 AQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDR 154
Score = 139 bits (353), Expect = 4e-34
Identities = 53/148 (35%), Positives = 88/148 (59%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G K E G L+G + V+ L DG H VDS+E++F +AA A+K+A ++ ILEP
Sbjct: 544 GLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEP 603
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
+M V I P E+ G ++ VT R G + G E + + + A +PL++MFG+A LRS+TQ
Sbjct: 604 MMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQ 663
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNEYQ 1026
G+G ++M + Y+ + + ++ + +
Sbjct: 664 GRGTYTMYFDHYAEVPKSIAEDIIKKNK 691
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 793 bits (2050), Expect = 0.0
Identities = 286/650 (44%), Positives = 419/650 (64%), Gaps = 16/650 (2%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGR---ISEMHEVRGKDNVGAVMDSMELERQR 251
++ +RNIGI+AHID+GKTT TERIL+YTGR I E+HE G A MD ME ER+R
Sbjct: 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHE--G----AATMDFMEQERER 61
Query: 252 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 311
GITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV
Sbjct: 62 GITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV 121
Query: 312 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLI 371
RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID++
Sbjct: 122 WRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
Query: 372 QRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDD 431
+ KA + LG ++R IP + +A ++L+E A+ DE + +LE + +E++
Sbjct: 182 RMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEE 241
Query: 432 IKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV 491
+ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV
Sbjct: 242 LVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVV 299
Query: 492 LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRL 550
P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+
Sbjct: 300 EIHPDP-NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRM 358
Query: 551 HSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNN 609
H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+
Sbjct: 359 HANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK 418
Query: 610 KDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669
D++ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GK
Sbjct: 419 ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGK 478
Query: 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK 729
P+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK
Sbjct: 479 PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSG--FEFVNAIVGGVIPK 536
Query: 730 PFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 789
++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++
Sbjct: 537 EYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQK 596
Query: 790 GVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839
G ILEPIM VE++TP E+ G V+ + R G + G E + + I A
Sbjct: 597 GDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF 646
Score = 205 bits (524), Expect = 9e-56
Identities = 65/107 (60%), Positives = 82/107 (76%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
A MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V
Sbjct: 50 ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFD 109
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 110 SSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQER 156
Score = 138 bits (350), Expect = 9e-34
Identities = 58/146 (39%), Positives = 89/146 (60%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++G ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLRS TQ
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNE 1024
G+G F M + Y +VQ++L+
Sbjct: 665 GRGSFVMFFDHYQEVPKQVQEKLIKG 690
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 779 bits (2014), Expect = 0.0
Identities = 293/661 (44%), Positives = 415/661 (62%), Gaps = 25/661 (3%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGR---ISEMHEVRGKDNVGAVMDSMELERQR 251
PI RNIGISAHID+GKTT TERILFYTG I E+H+ G A MD ME E++R
Sbjct: 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHD--G----AATMDWMEQEQER 59
Query: 252 GITIQSAATYTLWK-------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV 304
GITI SAAT W H INIIDTPGHVDFT+EVER++RVLDGA++V CAVGGV
Sbjct: 60 GITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV 119
Query: 305 QSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSET 364
Q Q+ TV RQ +Y VP IAF+NK+DR+GA+ +V+NQ++ ++G N LQ+ IG
Sbjct: 120 QPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHF 179
Query: 365 KGIIDLIQRKAIYFEGP-LGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
G++DL++ KAI + G E+IPAD+ + A Q LIE AE E L E +L
Sbjct: 180 TGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLG 239
Query: 424 EKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY-AIE 482
+ ++E +IK A+R+ L + V G+A KNKGVQ +LDAV+DYLP+P +V I
Sbjct: 240 GEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGIL 299
Query: 483 NGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKK 541
+ +D + S D PF ALAFK+ F G LT+ R Y G + G+ + N +
Sbjct: 300 DDGKDTPAERHASDDE--PFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAAR 357
Query: 542 VRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVV 600
R R+V++H+N+ E+++EV AGDI A G+ D +GDT + D + I LE + +PV+
Sbjct: 358 ERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDT-LCDPDAPIILERMEFPEPVI 416
Query: 601 SMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMERE 660
S++++ D++ A+ R KEDP+F + D ES +T+++GMGELHL+I RM+RE
Sbjct: 417 SIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKRE 476
Query: 661 YNCPVVLGKPKVAFKETLVQPF-DFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTK-LEF 718
+N +GKP+VA++ET+ Q D + H KQSGG GQYG V+ + PL P +N K EF
Sbjct: 477 FNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEF 536
Query: 719 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILA 778
I++ G +P ++PA+ KG ++ + G L+G V + + L G H VDS+E++F LA
Sbjct: 537 INDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLA 596
Query: 779 AHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYA 838
A A K+ +++ +LEPIM VE+ TP E G V+ +++R G+L+G E + V I+A
Sbjct: 597 ASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHA 656
Query: 839 E 839
E
Sbjct: 657 E 657
Score = 198 bits (505), Expect = 3e-53
Identities = 68/114 (59%), Positives = 86/114 (75%), Gaps = 7/114 (6%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWK-------DHNINIIDTPGHVDFTVEVERALRVLD 75
A MD ME E++RGITI SAAT W H INIIDTPGHVDFT+EVER++RVLD
Sbjct: 48 ATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLD 107
Query: 76 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
GA++V CAVGGVQ Q+ TV RQ +Y VP IAF+NK+DR+GA+ +V+NQ++ +
Sbjct: 108 GAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTR 161
Score = 138 bits (351), Expect = 7e-34
Identities = 54/146 (36%), Positives = 90/146 (61%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G ++ + G L+G V + + L G H VDS+E++F LAA A K+ +++ +LEP
Sbjct: 556 GIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEP 615
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
IM VE+ TP E G V+ +++R G+L+G E + V I+AE+PL++MFG+A LRS T+
Sbjct: 616 IMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTK 675
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNE 1024
G+ ++M++ +Y A V ++
Sbjct: 676 GRASYTMEFLKYDEAPSNVAQAVIEA 701
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 738 bits (1907), Expect = 0.0
Identities = 182/650 (28%), Positives = 310/650 (47%), Gaps = 41/650 (6%)
Query: 194 KPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGI 253
+ IR + + H SGKTTLTE +L+ TG V + D +
Sbjct: 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV---EEGTTTTDYTPEAKLHRT 60
Query: 254 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 313
T+++ L++ H + ++D PG+ DF E+ AL D A++ + A GVQ T
Sbjct: 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT 120
Query: 314 QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQR 373
+R +P + + KLD+ G D Y ++ +R +G + +P+ G + G+ID+
Sbjct: 121 VAERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLG-PILPIDLPLYEGGKWVGLIDVFHG 178
Query: 374 KAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 433
KA +E R E+P + ++ + RQE++E + E DE L E +LE + ++ + ++
Sbjct: 179 KAYRYE---NGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALE 235
Query: 434 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLN 493
KA + PV + + + GV LL+ +L+ LP+P E
Sbjct: 236 KAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTE------------------ 277
Query: 494 PSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHS 552
R G P +A FK++ F GQ+ Y+R Y+G+L+ G+ + + +VR+ L
Sbjct: 278 --RFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQS--EAGQVRLPHLYVPMG 333
Query: 553 NEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVA--DPVVSMSIKAVNN 609
++ +VEE AG + + G + S E + DP V +++
Sbjct: 334 KDLLEVEEAEAGFVLGVPKAEGLHRGMV-LWQGEKPESEEVPFARLPDPNVPVALHPKGR 392
Query: 610 KDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 669
D +A+++ +EDP+ E+ E L+ G GELHL +R+ ++Y V
Sbjct: 393 TDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERL-QDYGVEVEFSV 451
Query: 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK 729
PKV ++ET+ + + +KKQ+GG GQYG V LEP + F G +P
Sbjct: 452 PKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPS 506
Query: 730 PFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 789
+ AI +G K+ +KG L+G V G + ++ +G H VDS++++F +AA A K+ E
Sbjct: 507 KYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAE 566
Query: 790 GVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAE 839
+LEPI +++ P E G VL+ + R G + G E + ++AE
Sbjct: 567 AHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAE 616
Score = 190 bits (486), Expect = 4e-51
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 23 AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 82
D + T+++ L++ H + ++D PG+ DF E+ AL D A++ +
Sbjct: 47 TTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVS 106
Query: 83 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
A GVQ T +R +P + + KLD+ G D Y ++ +R
Sbjct: 107 AEAGVQVGTERAWTVAERLGLPRMVVVTKLDK-GGDYYALLEDLRST 152
Score = 139 bits (354), Expect = 2e-34
Identities = 46/148 (31%), Positives = 81/148 (54%)
Query: 879 GFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEP 938
G K+ +KG L+G V G + ++ +G H VDS++++F +AA A K+ E +LEP
Sbjct: 515 GIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEP 574
Query: 939 IMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLRSSTQ 998
I +++ P E G VL+ + R G + G E + ++AE+PL ++ + L T
Sbjct: 575 IYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTG 634
Query: 999 GKGEFSMDYSRYSPALPEVQDRLVNEYQ 1026
G G +++++S Y+ P + R+V E
Sbjct: 635 GAGAYTLEFSHYAEVPPHLAQRIVQERA 662
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 388 bits (997), Expect = e-120
Identities = 150/768 (19%), Positives = 282/768 (36%), Gaps = 136/768 (17%)
Query: 197 EYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ 256
+RN+ + AH+D GK+TLT+ ++ G IS + D+ + E++RGITI+
Sbjct: 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEAR-----FTDTRKDEQERGITIK 71
Query: 257 SAAT----------------YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 300
S A T IN+ID+PGHVDF+ EV ALRV DGA++V+
Sbjct: 72 STAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDT 131
Query: 301 VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPI-- 358
+ GV QT TV RQ + + INK+DR + + Q + + +
Sbjct: 132 IEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVST 191
Query: 359 ------------------GLGSETKGIIDLIQRKAI--------------------YFEG 380
GS G I++ A F
Sbjct: 192 YADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFN 251
Query: 381 PLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRST 440
P ++ A+ K + +++ + + +E + + ++ ++
Sbjct: 252 PKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDE 311
Query: 441 LTRKFTPVLVGTALKNKGV-QTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVLN 493
+ +L K LL+ ++ +LP+P Y E + + N
Sbjct: 312 KDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKN 371
Query: 494 PSRDGKHPFIALAFKLEAGKF--GQLTYMRCYQGKLRKGEMIYNVRTD---------KKV 542
+ K+ + R + G ++ G+ + +
Sbjct: 372 CDPKA--DLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIK 429
Query: 543 RVSRLVRLHSNEMEDVEEVLAGDIFALFGVD-CASGDTFVTDKNNSISLESI-YVADPVV 600
+ R+V + +E +++ AG+I L G+D +T + +++ + + PVV
Sbjct: 430 AIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVV 489
Query: 601 SMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMERE 660
++++ N D + ++R +K DP + ES E +V+G GELHLEI Q +E +
Sbjct: 490 QVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHD 548
Query: 661 Y-NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLE-- 717
+ P+ + P VA++ET+ L K + + Y + EP+ + +E
Sbjct: 549 HAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKA----EPIDEEVSLAIENG 604
Query: 718 -----------------------------------------FIDETVGTNVPKPFLPAII 736
ID+T +++
Sbjct: 605 IINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVV 664
Query: 737 KGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG--AMKQAYEEGVWQI 794
F+ ++G + G + VR+ + D H + + A + +I
Sbjct: 665 AAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKI 724
Query: 795 LEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD--DWVTIYAEM 840
EP+ VEI P + G + +++ K+ G + E + T+ A +
Sbjct: 725 QEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYL 772
Score = 149 bits (377), Expect = 7e-37
Identities = 47/144 (32%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 9 HIKQEQVRGKDNVGAVMDSMELERQRGITIQSAAT----------------YTLWKDHNI 52
I G+ D+ + E++RGITI+S A T I
Sbjct: 44 GIISAAKAGEARF---TDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 100
Query: 53 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKL 112
N+ID+PGHVDF+ EV ALRV DGA++V+ + GV QT TV RQ + + INK+
Sbjct: 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKV 160
Query: 113 DRLGADPYRVINQMRQKTSRWISN 136
DR + + Q +R + +
Sbjct: 161 DRALLELQVSKEDLYQTFARTVES 184
Score = 106 bits (266), Expect = 1e-23
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 857 VLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF 916
++ D + +EI + F+ ++G + G + VR+ + D H +
Sbjct: 645 LVIDQTKAVQYLHEIKDSVV-AAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGG 703
Query: 917 ILAAHG--AMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKD-- 972
+ A + +I EP+ VEI P + G + +++ K+ G + E +
Sbjct: 704 QIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGT 763
Query: 973 DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDR 1020
T+ A +P+N+ FGF G+LR +T G+ M + +S + D
Sbjct: 764 PLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDP 811
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 230 bits (589), Expect = 7e-66
Identities = 124/475 (26%), Positives = 218/475 (45%), Gaps = 33/475 (6%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSA 258
R I +H D+GKTTLTE++L + G I ++ K A D MELE+QRGI++ ++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTS 73
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
+KD+ IN++DTPGH DFT + R L +D A++V+ A GV+ +T+ + +
Sbjct: 74 VMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR 133
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
P + FINK+DR +++++ + + A + PIG+G KGI LI+ +
Sbjct: 134 HTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLY 193
Query: 379 EGPLGDNLRIEEIPADL-KKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 437
+ + + E + E + K +L + E++ + +
Sbjct: 194 QPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGAS------HPFEREG--- 244
Query: 438 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRD 497
L + TP+ G+A+ N GV LLDA + P P G+E ++ P +
Sbjct: 245 --YLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQ---------GRETNSRLVKPEEE 293
Query: 498 GKHPFIALAFKLEAG----KFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSN 553
F FK++A ++ ++R G+ +KG Y+VR K+++++ + +
Sbjct: 294 ---KFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAG 350
Query: 554 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDR 612
+ E+ EE GDI L GDTF + I + ++ + +
Sbjct: 351 KRENAEEAWPGDIIGLHNHGTIQIGDTFTQGER--FKFTGIPNFASELFRLVRLKDPLKQ 408
Query: 613 DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 667
K + + ++E T F +S E ++ +G L ++ A R+E EYN V
Sbjct: 409 KALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVY 462
Score = 96.3 bits (240), Expect = 8e-21
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 14 QVRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR 72
++ K A D MELE+QRGI++ ++ +KD+ IN++DTPGH DFT + R L
Sbjct: 45 TIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLT 104
Query: 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+D A++V+ A GV+ +T+ + + P + FINK+DR +++++
Sbjct: 105 AVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESI 161
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 230 bits (589), Expect = 8e-66
Identities = 122/474 (25%), Positives = 208/474 (43%), Gaps = 30/474 (6%)
Query: 200 RNIGISAHIDSGKTTLTERILFYTGRISEMHEVRG-KDNVGAVMDSMELERQRGITIQSA 258
R I +H D+GKTT+TE++L + I V+G N A D ME+E+QRGI+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
+ D +N++DTPGH DF+ + R L +D ++V+ A GV+ +T + +
Sbjct: 74 VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR 133
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
D P + F+NKLDR DP +++++ ++ A + PIG G KG+ L + + +
Sbjct: 134 DTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLY 193
Query: 379 EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438
+ G ++ I L + +E + + + +
Sbjct: 194 QSGKGHTIQEVRIVKGLNNPDLDAAVGEDLA---------QQLRDELELVKGASNEFDKE 244
Query: 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDG 498
L + TPV GTAL N GV +LD ++++ P P ++ + S D
Sbjct: 245 LFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPM---------PRQTDTRTVEASED- 294
Query: 499 KHPFIALAFKLEAG----KFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNE 554
F FK++A ++ +MR GK KG + VRT K V +S + + +
Sbjct: 295 --KFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGD 352
Query: 555 MEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRD 613
VEE GDI L GDTF + + I P + I+ + +
Sbjct: 353 RSHVEEAYPGDILGLHNHGTIQIGDTFTQGEM--MKFTGIPNFAPELFRRIRLKDPLKQK 410
Query: 614 NFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 667
K + + ++E F + + +V +G L ++ R++ EYN V
Sbjct: 411 QLLKGLVQLSEEGAV-QVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVY 463
Score = 96.7 bits (241), Expect = 7e-21
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 14 QVRG-KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR 72
V+G N A D ME+E+QRGI+I ++ + D +N++DTPGH DF+ + R L
Sbjct: 45 TVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLT 104
Query: 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQK 129
+D ++V+ A GV+ +T + + D P + F+NKLDR DP +++++ +
Sbjct: 105 AVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENE 161
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 138 bits (350), Expect = 4e-34
Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 15/160 (9%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRIS--EMHEVRGKDNVGAVMDSMELERQRGI 253
++ IRN I AHID GK+TL++RI+ G +S EM V+DSM+LER+RGI
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEA--------QVLDSMDLERERGI 52
Query: 254 TIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 308
TI++ + +K + +N IDTPGHVDF+ EV R+L +GA+LV+ A GV++QT
Sbjct: 53 TIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQT 112
Query: 309 LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348
L D+ + +NK+D ADP RV ++ VG
Sbjct: 113 LANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVG 152
Score = 101 bits (254), Expect = 3e-22
Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 5/108 (4%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAI 78
V+DSM+LER+RGITI++ + +K + +N IDTPGHVDF+ EV R+L +GA+
Sbjct: 40 VLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGAL 99
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
LV+ A GV++QTL D+ + +NK+D ADP RV ++
Sbjct: 100 LVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEI 147
Score = 59.0 bits (144), Expect = 6e-09
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 515 GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI-FALFGV- 572
G ++ +R G LRKG+ + + T + R + + + + D E+ G++ + + +
Sbjct: 205 GVVSLIRIKNGTLRKGDKVKVMSTGQTYNADR-LGIFTPKQVDRTELKCGEVGWLVCAIK 263
Query: 573 ---DCASGDTFVTDKNNSIS--LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDP 627
GDT +T N L P V + V++ D + F A+ + + D
Sbjct: 264 DIHGAPVGDT-LTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDA 322
Query: 628 TFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 675
+ FY+PES L G +G LH+EI +R+EREY+ ++ P V ++
Sbjct: 323 SL--FYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYE 373
Score = 51.7 bits (125), Expect = 9e-07
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLND-MFGFAGD 992
++ EPI + P + G+V+ L ++ G+ + V + EIP+ + + F
Sbjct: 398 ELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDR 457
Query: 993 LRSSTQGKGEFSMDY--SRYSPA 1013
L+S+++G S+DY R+ +
Sbjct: 458 LKSTSRGYA--SLDYNFKRFQAS 478
Score = 35.9 bits (84), Expect = 0.067
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
++ EPI + P + G+V+ L ++ G+ + V + E+
Sbjct: 398 ELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEI 445
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 137 bits (349), Expect = 6e-34
Identities = 61/161 (37%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRIS--EMHEVRGKDNVGAVMDSMELERQRG 252
+ +RN I AH+D GK+TL +R+L YTG IS E E ++D++++ER+RG
Sbjct: 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKRE--------QLLDTLDVERERG 53
Query: 253 ITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ 307
IT++ A +K + +++IDTPGHVDF+ EV RAL +GA+L++ A G+++Q
Sbjct: 54 ITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQ 113
Query: 308 TLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348
T+ + D+ I INK+D AD RV Q+ + +G
Sbjct: 114 TVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLG 154
Score = 101 bits (254), Expect = 3e-22
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 5/108 (4%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAI 78
++D++++ER+RGIT++ A +K + +++IDTPGHVDF+ EV RAL +GA+
Sbjct: 42 LLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGAL 101
Query: 79 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
L++ A G+++QT+ + D+ I INK+D AD RV Q+
Sbjct: 102 LLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQI 149
Score = 59.0 bits (144), Expect = 6e-09
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 515 GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI-FALFGV- 572
G + ++R + G+++ G+ I + T K+ V+ V + +M +++ AGD+ + +
Sbjct: 207 GAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTE-VGAQTPKMTKFDKLSAGDVGYIAASIK 265
Query: 573 ---DCASGDTFVTDKNNSIS--LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDP 627
D GDT +T N + A P+V I + + A++++ D
Sbjct: 266 DVRDIRIGDT-ITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDA 324
Query: 628 TFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 675
Y+PES L G +G LH+EI +R+EREY ++ P V ++
Sbjct: 325 AI--VYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYR 375
Score = 48.6 bits (117), Expect = 8e-06
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDW-VTIYAEIPLND-MFGFAG 991
+ EP + V I TP E+ G ++ L ++ GI + D V + E+PL++ + F
Sbjct: 402 YVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHD 461
Query: 992 DLRSSTQGKGEFSMDY--SRYSPA 1013
++S ++G S DY Y P+
Sbjct: 462 KIKSISRGFA--SYDYEFIGYRPS 483
Score = 35.9 bits (84), Expect = 0.084
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 793 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQG 826
+ EP + V I TP E+ G ++ L ++ GI +
Sbjct: 402 YVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKN 435
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 80.5 bits (199), Expect = 8e-16
Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 28/197 (14%)
Query: 193 HKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRG 252
H + I N+GI HID GKTTL++ + T S + D + ++RG
Sbjct: 14 HMDFKNI-NLGIFGHIDHGKTTLSKVL---TEIAST-----------SAHDKLPESQKRG 58
Query: 253 ITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--- 308
ITI + + L I ++D PGH D V A ++D A++V+ A G ++QT
Sbjct: 59 ITIDIGFSAFKLENYR-ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEH 117
Query: 309 LTVNRQMKRYDVPCIAFINKLDRLGADPY--RVINQMRQKVGHNAAFLQIPIGLGSETK- 365
+ + ++P I I K D R M+ + I S
Sbjct: 118 MLILDHF---NIPIIVVITKSDNA-GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTG 173
Query: 366 -GIIDLIQRKAIYFEGP 381
G+ +L
Sbjct: 174 FGVDELKNLIITTLNNA 190
Score = 57.0 bits (138), Expect = 2e-08
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 89
++RGITI + + L I ++D PGH D V A ++D A++V+ A G ++
Sbjct: 54 SQKRGITIDIGFSAFKLENYR-ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT 112
Query: 90 QT---LTVNRQMKRYDVPCIAFINKLD 113
QT + + ++P I I K D
Sbjct: 113 QTGEHMLILDHF---NIPIIVVITKSD 136
Score = 38.2 bits (89), Expect = 0.015
Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 40/129 (31%)
Query: 446 TPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPF--- 502
+ ++ +A GV L + ++ L N R+ + F
Sbjct: 163 SSIIPISAKTGFGVDELKNLIITTLNNA-------------------EIIRNTESYFKMP 203
Query: 503 IALAFKLEAGKFGQLTYM--RCYQGKLRKGE--MIYNVRTDKKVRVSRLVRLHSNEM--E 556
+ AF ++ G T + +G ++ G+ + + KVR S + E
Sbjct: 204 LDHAFPIK----GAGTVVTGTINKGIVKVGDELKVLPINMSTKVR--------SIQYFKE 251
Query: 557 DVEEVLAGD 565
V E AGD
Sbjct: 252 SVMEAKAGD 260
Score = 35.5 bits (82), Expect = 0.11
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 142 HKPIEYIRNIGISAHIDSGKTTLTERI 168
H + I N+GI HID GKTTL++ +
Sbjct: 14 HMDFKNI-NLGIFGHIDHGKTTLSKVL 39
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 75.1 bits (185), Expect = 4e-14
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 30/154 (19%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEV--------RGKDNVGAVMDSMELERQ 250
N+ + H+DSGK+T T +++ G I + + + +G V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 251 RGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS 306
RGITI A LWK + + +ID PGH DF + D AIL++ G
Sbjct: 69 RGITIDIA----LWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE 124
Query: 307 QTLTVNRQMKRYDVPCIAF----------INKLD 330
++ + Q + + +AF +NK+D
Sbjct: 125 AGISKDGQTREH--ALLAFTLGVRQLIVAVNKMD 156
Score = 53.9 bits (130), Expect = 2e-07
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 20/116 (17%)
Query: 12 QEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEV 67
E +G V+D ++ ER+RGITI A LWK + + +ID PGH DF +
Sbjct: 47 AELGKGSFKYAWVLDKLKAERERGITIDIA----LWKFETPKYQVTVIDAPGHRDFIKNM 102
Query: 68 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF----------INKLD 113
D AIL++ G ++ + Q + + +AF +NK+D
Sbjct: 103 ITGTSQADCAILIIAGGVGEFEAGISKDGQTREH--ALLAFTLGVRQLIVAVNKMD 156
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 67.3 bits (165), Expect = 5e-13
Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 23/140 (16%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266
H+D GKTTL + I R V + GIT Q Y + +
Sbjct: 16 HVDHGKTTLLDAI-------------R-HSKVTE-------QEAGGIT-QHIGAYQVTVN 53
Query: 267 HN-INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF 325
I +DTPGH FT R +V D ILV+ A GV QT+ K +VP I
Sbjct: 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVA 113
Query: 326 INKLDRLGADPYRVINQMRQ 345
INK+D+ A+P RV+ ++ +
Sbjct: 114 INKMDKPEANPDRVMQELME 133
Score = 65.8 bits (161), Expect = 2e-12
Identities = 51/152 (33%), Positives = 67/152 (44%), Gaps = 24/152 (15%)
Query: 35 GITIQSAATYTLWKDHN-INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 93
GIT Q Y + + I +DTPGH FT R +V D ILV+ A GV QT+
Sbjct: 40 GIT-QHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVE 98
Query: 94 VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHK--PIEY---I 148
K +VP I INK+D+ A+P RV+ + L E+ P E+
Sbjct: 99 AINHAKAANVPIIVAINKMDKPEANPDRVMQE-------------LMEYNLVPEEWGGDT 145
Query: 149 RNIGISAHIDSGKTTLTERILFYTGRISEMHE 180
+SA G L E IL +SEM E
Sbjct: 146 IFCKLSAKTKEGLDHLLEMILL----VSEMEE 173
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 1e-12
Identities = 101/636 (15%), Positives = 192/636 (30%), Gaps = 196/636 (30%)
Query: 1 MEHKVK-IIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG 59
+++ K I+ + ++ + V D + I S DH II +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMP-----KSIL--SKEEI----DH---IIMSKD 59
Query: 60 HVDFTVEVERALRVLDGAILVLCAVG--GVQ---SQTLTVNRQ--MKRYDVPCIA----- 107
V LR+ L + VQ + L +N + M
Sbjct: 60 ------AVSGTLRLFW----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 108 --FINKLDRLGAD-----PYRV-----INQMRQKTSRWISNESLSEHKPIEYIRNIGISA 155
+I + DRL D Y V ++RQ L E +P + + G+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA---------LLELRPAKNVLIDGVLG 160
Query: 156 HIDSGKTTLTERILFYTGRISEMHETSRWIS-NESLSEHKPIEYIRNIGISAHIDSGKTT 214
SGKT + + +M W++ S +E ++ + ID
Sbjct: 161 ---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDP---N 212
Query: 215 LTERILFYTGRISEMHEVRGK-----------------DNV--GAVMDSMELE------- 248
T R + +H ++ + NV ++ L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 249 RQRGIT-IQSAATYTLWKDHNINIIDTPGHVDFTV-EVERAL-------------RVLDG 293
R + +T SAAT T +I++ T EV+ L VL
Sbjct: 273 RFKQVTDFLSAATTT-----HISLDHHSM--TLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 294 AILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINK--LDRLGADPYRVINQMRQKVGHNA 351
L + L K + + I + L+ L +P + R+ +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EP----AEYRKMFDRLS 379
Query: 352 AF---LQIPIGL---------GSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEA 399
F IP L S+ +++ + + ++ + P + I I +LK +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 400 ESKRQ---ELIE----------------------------HVAEGDEILGEMFLEEKSIS 428
E++ +++ H+ + E + +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRMVF 497
Query: 429 EDD--IKKAIRRSTLTRKFTPVLVGTAL----------KNKGV-QTLLDAVLDYLPNPGE 475
D +++ IR + + ++ T N + L++A+LD+LP E
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 476 VTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA 511
++ + D IAL + EA
Sbjct: 558 -------------NLICSKYTDLLR--IALMAEDEA 578
Score = 51.8 bits (123), Expect = 1e-06
Identities = 68/534 (12%), Positives = 156/534 (29%), Gaps = 149/534 (27%)
Query: 552 SNEME----DVEEVLAGDIFALFGVDCASGDTFVTDKNNSI----SLESIYVADPVVSMS 603
+ E + D+ V F DC V D SI ++ I ++ VS +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNF--DCKD----VQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 604 IKAVNNKDRDNFSKAVQRFTKE--DPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY 661
++ + VQ+F +E + F P E + +Y ++ +R Y
Sbjct: 65 LRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQRDRLY 120
Query: 662 NCPVVLGK-------PKVAFKETL--VQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSA 712
N V K P + ++ L ++P + GSG+ + S
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV--LGSGKTWVALDVCL----SY 174
Query: 713 NTKLEFIDE----TVGT-NVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM 767
+ + + + N P+ L + K Q+ + +++ +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-- 232
Query: 768 VDSNEISFILAAHGAMKQAYEEG------VW--QILEPIMSVEISTPIEFQGSVLNLVTK 819
E+ +L + YE V + F S L+T
Sbjct: 233 ----ELRRLL-----KSKPYENCLLVLLNVQNAKAWNA-----------FNLSCKILLTT 272
Query: 820 RHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHG 879
R VT + LS + + + + + +
Sbjct: 273 R----------FKQVTDF--------LSAATTTHISLDHHSMTLTPDEVKSL-LLKYLD- 312
Query: 880 FKQMCEKGCL-----SGS--RVAGVRMVLKDGDNH-----MVDSNEISFILAA------H 921
C L + + R++ + ++DG V+ ++++ I+ +
Sbjct: 313 ----CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 922 GAMKQAYE------EGVWQILEPIMSV---EISTPIEFQGSVLNLVTKRHGILQGNEGKD 972
++ ++ I ++S+ ++ V+N + K +++ K+
Sbjct: 369 AEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIK--SDVMVVVNKLHKY-SLVEKQ-PKE 423
Query: 973 DWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQ 1026
++I + ++ + +V+ Y
Sbjct: 424 STISIP-------------SI----------YLELKVKLENEYALHRSIVDHYN 454
Score = 36.0 bits (82), Expect = 0.077
Identities = 37/255 (14%), Positives = 78/255 (30%), Gaps = 91/255 (35%)
Query: 18 KDNVGAVMDSME----LERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV 73
K +V V++ + +E+Q +T ++ +I ++ ++ + R +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQP-----KESTISI---PSI-YLELKVKLENEYALHR--SI 449
Query: 74 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPY---------RVIN 124
+D Y++P + L D Y + I
Sbjct: 450 VD------------------------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 125 QMRQKTS--------RWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRIS 176
+ T R++ E K IR+ + + +++ FY I
Sbjct: 486 HPERMTLFRMVFLDFRFL------EQK----IRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 177 EMHETSRWISNESLSEHKPIEYIRNI-GISAHIDSGKTTLTERILFYTGRISEMHEVRGK 235
+ N+ E + + I ++ K T +L RI+ M E
Sbjct: 536 D---------NDPKYERLVNAILDFLPKIEENLICSKYT---DLL----RIALMAE---- 575
Query: 236 DNVGAVMDSMELERQ 250
A+ + E +Q
Sbjct: 576 --DEAIFE--EAHKQ 586
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 68.1 bits (167), Expect = 6e-12
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEV--------RGKDNVGAVMDSMELERQ 250
N+ + H+D GK+TL R+L G I E + E + + ++D ++ ER+
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
RG+TI K + IID PGH DF + D AILV+ A G ++
Sbjct: 68 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 127
Query: 311 VNRQMKRYDVPC--------IAFINKLD 330
V Q + + + I +NK+D
Sbjct: 128 VEGQTREHIILAKTMGLDQLIVAVNKMD 155
Score = 46.1 bits (110), Expect = 5e-05
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 12 QEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL 71
++ + + ++D ++ ER+RG+TI K + IID PGH DF +
Sbjct: 46 KKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGA 105
Query: 72 RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC--------IAFINKLD 113
D AILV+ A G ++V Q + + + I +NK+D
Sbjct: 106 SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 67.3 bits (165), Expect = 9e-12
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 187 NESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISE------------MHEVRG 234
L +H+ E +R ++D GK+TL R+L + I E
Sbjct: 13 LAYLGQHERKEMLR-FLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGD 71
Query: 235 KDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGA 294
++ ++D ++ ER++GITI A Y I DTPGH +T + D A
Sbjct: 72 DVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLA 131
Query: 295 ILVLCAVGGVQSQT 308
I+++ A GVQ+QT
Sbjct: 132 IILVDARYGVQTQT 145
Score = 51.1 bits (123), Expect = 1e-06
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 24 VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 83
++D ++ ER++GITI A Y I DTPGH +T + D AI+++ A
Sbjct: 78 LVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDA 137
Query: 84 VGGVQSQT 91
GVQ+QT
Sbjct: 138 RYGVQTQT 145
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 67.0 bits (164), Expect = 2e-11
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEV--------RGKDNVGAVMDSMELERQ 250
NI H+D+GK+TL ILF TG + + M ++ + + +DS ER+
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
+G T++ Y + +++D PGH + + D +LV+ A G
Sbjct: 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE 164
Query: 311 VNRQMK 316
Q +
Sbjct: 165 RGGQTR 170
Score = 45.4 bits (108), Expect = 7e-05
Identities = 18/88 (20%), Positives = 35/88 (39%)
Query: 12 QEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL 71
+E + + +DS ER++G T++ Y + +++D PGH + +
Sbjct: 83 KEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGA 142
Query: 72 RVLDGAILVLCAVGGVQSQTLTVNRQMK 99
D +LV+ A G Q +
Sbjct: 143 SQADIGVLVISARRGEFEAGFERGGQTR 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.7 bits (157), Expect = 2e-10
Identities = 64/347 (18%), Positives = 109/347 (31%), Gaps = 117/347 (33%)
Query: 305 Q-SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
Q SQ M Y A + +R AD + + G +
Sbjct: 1624 QGSQE--QGMGMDLYKTSKAAQ-DVWNR--ADNH-----FKDTYGFS------------- 1660
Query: 364 TKGIIDLIQ----RKAIYFEGPLGDNLR------IEEIPADLKKEAESKRQELIEHVA-- 411
I+D++ I+F G G +R I E D K + E +E+ EH
Sbjct: 1661 ---ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 412 --EGD-EILGE-------MFLEEKSISEDDIKKAIRRSTLTRKFTPV----------LVG 451
+ +L + L EK+ ED ++ L L
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFED-----LKSKGLIPADATFAGHSLGEYAALAS 1772
Query: 452 TALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV----LNPSRDGKHPFIALAF 507
A V ++ V + + G A+ + + +NP R +A +F
Sbjct: 1773 LA----DVMSIESLV-EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR------VAASF 1821
Query: 508 KLEAGKFGQLTYMRCYQGKLRKGEMI----YNVRTDKKVRVSRLVRLHSNEMEDVEEVLA 563
EA ++ + R G ++ YNV +++ V A
Sbjct: 1822 SQEALQYV------VERVGKRTGWLVEIVNYNVE-NQQY------------------VAA 1856
Query: 564 GDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNK 610
GD+ AL D + N I L+ I + + S+S++ V
Sbjct: 1857 GDLRAL---DTVTNVL------NFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 55.4 bits (133), Expect = 1e-07
Identities = 85/537 (15%), Positives = 158/537 (29%), Gaps = 181/537 (33%)
Query: 29 ELERQ--RGITIQSAA-------TYTLWKDHNI--------NIIDTPGHVDFTVEVERAL 71
E E G I + A TL K + + P F + AL
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP----FDKKSNSAL 145
Query: 72 --RVLDGAILVLCAV-GGVQSQTLTVNRQM-KRYDV--PCIA-FI----NKLDRLGADP- 119
V +G L A+ GG Q T ++ Y + I L L
Sbjct: 146 FRAVGEGNA-QLVAIFGG-QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 120 ------YRVINQMRQKTSRWISNESLSEHKP-IEYIRNIGIS---------AH------- 156
+ +N + W+ N + P +Y+ +I IS AH
Sbjct: 204 DAEKVFTQGLNILE-----WLENP---SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 157 ----------IDSGKTTLTERILFYTGRISEMHETSRWISNESLSE--HKPIEYIRNIGI 204
G T ++ ++ T ++ W ES K I + IG+
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLV--TAVAIAETDS--W---ESFFVSVRKAITVLFFIGV 308
Query: 205 SAHIDSGKTTLTERILFYTGRISE-----MHEVRGKDNVGAVMDSMELERQRGITIQSAA 259
+ T+L IL + +E M + + +++ +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-------LTQEQVQDY----VNKTN 357
Query: 260 TYTLWKDHNINI--IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 317
++ L + I ++ ++ V+ G L + N +++
Sbjct: 358 SH-LPAGKQVEISLVNGAKNL-----------VVSGPPQSLYGL----------NLTLRK 395
Query: 318 YDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIG-------LGSETKGIIDL 370
P G D R+ R+ N FL P+ L + I
Sbjct: 396 AKAPS----------GLDQSRIPFSERKLKFSNR-FL--PVASPFHSHLLVPASDLINKD 442
Query: 371 IQRKAIYFEGPLGDNLRIEEIP-------ADLKKEAESKRQELIEHVAEGDEILGEMFLE 423
+ + + F +++I P +DL+ + S + ++ D I+
Sbjct: 443 LVKNNVSFNAK---DIQI---PVYDTFDGSDLRVLSGSISERIV------DCII------ 484
Query: 424 EKSISEDDIKKAIR-RSTLTRKFTP-------VLVGTALKNKGVQTLLDAVLDYLPN 472
+ + + ++T F P VL GV+ ++ LD P+
Sbjct: 485 RLPV---KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 53.9 bits (129), Expect = 3e-07
Identities = 106/712 (14%), Positives = 204/712 (28%), Gaps = 277/712 (38%)
Query: 117 ADPYRVINQMRQK---------TSRWISNESLSEHKPIEYI-RNIG-ISAHIDSGKTTLT 165
+ + +Q++++ +E + P E + + +G +S+ ++ K
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTT---PAELVGKFLGYVSSLVEPSKVGQF 80
Query: 166 ERIL----------FYTGRISEMHE-TSRWISNESLSEHKPIEYIRN------------- 201
+++L + G ++H ++ + + K E I+N
Sbjct: 81 DQVLNLCLTEFENCYLEGN--DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 202 -IGISA---HIDSGKTTLTERILF--------YTGRISEMHEV--RGKDNVGAVMDSM-- 245
SA + G L +F Y E+ ++ VG ++
Sbjct: 139 KKSNSALFRAVGEGNAQLV--AIFGGQGNTDDY---FEELRDLYQTYHVLVGDLIKFSAE 193
Query: 246 ---ELERQRGITIQSAATYTLWKDHNINI---IDTPGHVDFTVEVERALRVLDGAILVLC 299
EL R T+ + +T +NI ++ P D L+
Sbjct: 194 TLSELIRT---TLDAEKVFT----QGLNILEWLENPS------------NTPDKDYLLSI 234
Query: 300 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ-IPI 358
+ + Q+ Y V LG P + + ++ GH+ + + I
Sbjct: 235 PISCPLI-GVI---QLAHYVVTAKL-------LGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 359 GLGSETKGIIDLIQRKAI---YFEGPLGDNLRIEE------IPADLKKEAESKRQELIEH 409
+ + RKAI +F G +R E +P + +++
Sbjct: 284 AETDSWESFFVSV-RKAITVLFFIG-----VRCYEAYPNTSLPPSILEDSL--------- 328
Query: 410 VAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDY 469
E +E G +P+L + L + VQ ++ +
Sbjct: 329 --ENNE--GVP-------------------------SPMLSISNLTQEQVQDYVNKTNSH 359
Query: 470 LPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRK 529
LP G+ ++ NG VV P + L L K Q ++
Sbjct: 360 LP-AGKQVEISLVNGA-KNLVVSGPPQS----LYGLNLTLRKAKAP----SGLDQSRIP- 408
Query: 530 GEMIYNVRTDKKVRVSR--L---VRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFVTDK 584
+++K++ S L HS+ + +++ D+
Sbjct: 409 -------FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL-----------------V 444
Query: 585 NNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG 644
N++S + + PV YD L
Sbjct: 445 KNNVSFNAKDIQIPV---------------------------------YDTFDGSDLRVL 471
Query: 645 MGELHLEIYAQRMEREYNCPVVLGKP-----KVAFKETLVQPFDFD--------YLHKKQ 691
G + I ++ P FK T + DF L +
Sbjct: 472 SGSISERI----------VDCIIRLPVKWETTTQFKATHI--LDFGPGGASGLGVLTHRN 519
Query: 692 SGGSGQYGRVI--GTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQ 741
G+G RVI GTL+ N ++ GFKQ
Sbjct: 520 KDGTGV--RVIVAGTLDI-----NPDDDY-------------------GFKQ 545
Score = 43.5 bits (102), Expect = 4e-04
Identities = 60/348 (17%), Positives = 107/348 (30%), Gaps = 116/348 (33%)
Query: 88 Q-SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIE 146
Q SQ M Y A + +R AD + + S
Sbjct: 1624 QGSQE--QGMGMDLYKTSKAAQ-DVWNR--ADNH------------FKDTYGFS------ 1660
Query: 147 YIRNIGISAHIDSGKTTLTERILF--YTGR-ISEMHETSRW-ISNESLSEHKPIEYIRNI 202
I +I + + LT I F G+ I E + + + + + I N
Sbjct: 1661 -ILDI-----VINNPVNLT--IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 203 GISAHI---DSGKTTLTE----RILFYTGRISEMHEVRGKDNV-----------G----- 239
+++ + G + T+ + + +++ K + G
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALT--LMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770
Query: 240 -AVMDSMELE------RQRGITIQSAATYTLWKDHNINIID-TPGHVDFTVEVERALRVL 291
++ D M +E RG+T+Q A N +I PG V + E
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE------ 1824
Query: 292 DGAILVLCAVGGVQSQTL--TVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKV-- 347
A+ + G ++ L VN Y+V NQ Q V
Sbjct: 1825 --ALQYVVERVGKRTGWLVEIVN-----YNVE-------------------NQ--QYVAA 1856
Query: 348 GHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADL 395
G A L + + +++ I+ + I L +L +EE+ L
Sbjct: 1857 GDLRA-LDT---VTN----VLNFIKLQKIDII-ELQKSLSLEEVEGHL 1895
Score = 43.1 bits (101), Expect = 6e-04
Identities = 103/630 (16%), Positives = 181/630 (28%), Gaps = 241/630 (38%)
Query: 442 TRKFT--------PVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-L 492
TR T +LV TA Q L + LP P E +A ++ E L
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQ-LQEQFNKILPEPTE--GFAADD--EPTTPAEL 60
Query: 493 NPSRDGKHPFIA-LAFKLEAGKFGQLTYM---------RCY-QGK--------------- 526
+ F+ ++ +E K GQ + CY +G
Sbjct: 61 -VGK-----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 527 --LRKGEMI---YNV-----RTDKKVRVSRLVRLHSNEMEDVEEVLAGD--IFALFGVDC 574
++ E+I R K S L R V G+ + A+FG
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFR----------AVGEGNAQLVAIFG--- 161
Query: 575 ASG----DTFVTDKNNSISLESIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTF 629
G D + + L +Y +V IK ++ + +
Sbjct: 162 --GQGNTDDYFEE------LRDLYQTYHVLVGDLIKFS--------AETLSELIRTTLDA 205
Query: 630 HFFYDPESKETLVSGMGELH--LEIYAQRMEREY--NCPVVLGKPKVAFKETLVQPFDFD 685
+ G+ + LE + +++Y + P+ P + ++Q
Sbjct: 206 EKVFT--------QGL-NILEWLENPSNTPDKDYLLSIPISC--PLI----GVIQ----- 245
Query: 686 YLHKKQSGGSGQY---GRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQM 742
L Y +++G P E G
Sbjct: 246 -L--------AHYVVTAKLLG----FTPG-----ELRSYLKGATG--------------- 272
Query: 743 CEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGV-WQILEPIMSV 801
+G ++ +A DS E SF ++ A+ + GV P S+
Sbjct: 273 HSQGLVTAVAIA------------ETDSWE-SFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 802 EISTPIEFQGSVLNLVTKRHGILQGNEG-----------KDDWVTIYAEMCEKGCLSGSR 850
P + S+ + NEG + V Y L +
Sbjct: 320 P---PSILEDSL-----------ENNEGVPSPMLSISNLTQEQVQDYVNKTNS-HLPAGK 364
Query: 851 VAGVRMVLKDGDNHMVDSNEIS-FILAAHGFKQMCEKG-CLSGSRVAGVRMVLKDGDNHM 908
V + L +G ++V +S + +G K SG
Sbjct: 365 Q--VEISLVNGAKNLV----VSGPPQSLYGLNLTLRKAKAPSG----------------- 401
Query: 909 VDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGN 968
+D + I F + + + L P +++P F +L + I +
Sbjct: 402 LDQSRIPF--------SERKLKFSNRFL-P-----VASP--FHSHLLVPASDL--INK-- 441
Query: 969 EGKDDWVTIYAE---IPLNDMFGFAGDLRS 995
+ + V+ A+ IP+ D F DLR
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFD-GSDLRV 470
Score = 42.3 bits (99), Expect = 0.001
Identities = 48/304 (15%), Positives = 86/304 (28%), Gaps = 128/304 (42%)
Query: 751 SRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQ 810
S+ A + V DNH D+ S IL+ +++ ++ I F
Sbjct: 1639 SKAA--QDVWNRADNHFKDTYGFS-------------------ILDIVINNPVNLTIHFG 1677
Query: 811 GSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNE 870
G K I + Y+ M + + G + K+ + H S
Sbjct: 1678 GE------KGKRIREN----------YSAMIFETIVDGKLKT--EKIFKEINEH---STS 1716
Query: 871 ISF----------------ILAAHG--FKQMCEKGCL-SGSRVAGVRMVLKDGDNHMVDS 911
+F + F+ + KG + + + AG H S
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG----------H---S 1763
Query: 912 -NEISFILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEG 970
E + LA+ V MS+E S++ +V R G
Sbjct: 1764 LGEYA-ALASLA--------DV-------MSIE---------SLVEVVFYR--------G 1790
Query: 971 KDDWVTIYAEIPLNDMFGFAGDLRSSTQGKGEFSM---DYSRYSPALP-EVQDRLVNEYQ 1026
T+ +P G+ + M + R + + E +V
Sbjct: 1791 M----TMQVAVP------------RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 1027 EATN 1030
+ T
Sbjct: 1835 KRTG 1838
Score = 37.3 bits (86), Expect = 0.034
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 34/141 (24%)
Query: 23 AVMDSMELE------RQRGITIQSAATYTLWKDHNINIID-TPGHVDFTVEVERALRVLD 75
++ D M +E RG+T+Q A N +I PG V + E
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE------- 1824
Query: 76 GAILVLCAVGGVQSQTL--TVNRQMKRYDVPC----IA-FINKLDRLGADPYRVINQMRQ 128
A+ + G ++ L VN Y+V A + LD + V+N ++
Sbjct: 1825 -ALQYVVERVGKRTGWLVEIVN-----YNVENQQYVAAGDLRALDTVT----NVLNFIKL 1874
Query: 129 KTSRWISNESLSEHKPIEYIR 149
+ I L + +E +
Sbjct: 1875 QK---IDIIELQKSLSLEEVE 1892
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 63.6 bits (155), Expect = 2e-10
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 24/97 (24%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR------GKDNVGA-----VMDSMEL 247
+ + H+D+GK+TL R+L+ +++ + +++ GK + +MD
Sbjct: 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGK---SSFKFAWIMDQTNE 225
Query: 248 ERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 280
ER+RG+T+ N I+D PGH DF
Sbjct: 226 ERERGVTVSIC----TSHFSTHRANFTIVDAPGHRDF 258
Score = 45.9 bits (109), Expect = 6e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 63
+MD ER+RG+T+ N I+D PGH DF
Sbjct: 219 IMDQTNEERERGVTVSIC----TSHFSTHRANFTIVDAPGHRDF 258
Score = 35.5 bits (82), Expect = 0.096
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 150 NIGISAHIDSGKTTLTERILFYTGRISE 177
+ + H+D+GK+TL R+L+ +++
Sbjct: 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQ 196
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 63.0 bits (154), Expect = 3e-10
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 24/97 (24%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR------GKDNVGA-----VMDSMEL 247
+ + H+D+GK+TL R+L+ +++ + +++ GK + +MD
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGK---SSFKFAWIMDQTNE 91
Query: 248 ERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 280
ER+RG+T+ N I+D PGH DF
Sbjct: 92 ERERGVTVSIC----TSHFSTHRANFTIVDAPGHRDF 124
Score = 45.7 bits (109), Expect = 7e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 63
+MD ER+RG+T+ N I+D PGH DF
Sbjct: 85 IMDQTNEERERGVTVSIC----TSHFSTHRANFTIVDAPGHRDF 124
Score = 35.3 bits (82), Expect = 0.10
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 150 NIGISAHIDSGKTTLTERILFYTGRISE 177
+ + H+D+GK+TL R+L+ +++
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLYDLNIVNQ 62
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 63.2 bits (154), Expect = 3e-10
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 24/97 (24%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE--MHEVR------GKDNVGA-----VMDSMEL 247
++ ++ H+DSGK+T+ RI+F G I+ M ++ GK G+ ++D+ E
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGK---GSFSYAWLLDTTEE 235
Query: 248 ERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 280
ER RG+T+ A I D PGH DF
Sbjct: 236 ERARGVTMDVA----STTFESDKKIYEIGDAPGHRDF 268
Score = 45.9 bits (109), Expect = 6e-05
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 24 VMDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDF 63
++D+ E ER RG+T+ A I D PGH DF
Sbjct: 229 LLDTTEEERARGVTMDVA----STTFESDKKIYEIGDAPGHRDF 268
Score = 35.1 bits (81), Expect = 0.12
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 150 NIGISAHIDSGKTTLTERILFYTGRISE 177
++ ++ H+DSGK+T+ RI+F G I+
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINS 206
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 62.2 bits (152), Expect = 4e-10
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 31/144 (21%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
N+G H+D GKTTLT + + + EV+ ++ D ER RGITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI----DKAPEERARGITINTAHV 68
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILVLCAVGGVQSQT-- 308
Y K H + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 69 EYETAKRHYSH-VDCPGHADY---------IKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 309 -LTVNRQMKRYDVPCIA-FINKLD 330
+ + RQ+ VP I F+NK+D
Sbjct: 119 HILLARQV---GVPYIVVFMNKVD 139
Score = 43.7 bits (104), Expect = 3e-04
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 27/97 (27%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILV 80
ER RGITI +A Y K H ++ D PGH D+ + +DGAILV
Sbjct: 56 ERARGITINTAHVEYETAKRHYSHV-DCPGHADY---------IKNMITGAAQMDGAILV 105
Query: 81 LCAVGGVQSQT---LTVNRQMKRYDVPCIA-FINKLD 113
+ A G QT + + RQ+ VP I F+NK+D
Sbjct: 106 VSAADGPMPQTREHILLARQV---GVPYIVVFMNKVD 139
Score = 31.4 bits (72), Expect = 1.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 150 NIGISAHIDSGKTTLT 165
N+G H+D GKTTLT
Sbjct: 13 NVGTIGHVDHGKTTLT 28
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 62.6 bits (152), Expect = 7e-10
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 36/146 (24%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMH--EVRGKDNVGAVMDSMELERQRGITIQSA 258
N+G H+D GKTTLT I T +++ + R D + D+ E+ RGITI ++
Sbjct: 298 NVGTIGHVDHGKTTLTAAI---TTVLAKTYGGAARAFDQI----DNAPEEKARGITINTS 350
Query: 259 -ATYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILVLCAVGGVQSQT 308
Y H + +D PGH D+ V +DGAILV+ A G QT
Sbjct: 351 HVEYDTPTRHYAH-VDCPGHADY---------VKNMITGAAQMDGAILVVAATDGPMPQT 400
Query: 309 ---LTVNRQMKRYDVPCIA-FINKLD 330
+ + RQ+ VP I F+NK D
Sbjct: 401 REHILLGRQV---GVPYIIVFLNKCD 423
Score = 45.3 bits (107), Expect = 1e-04
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 27/97 (27%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILV 80
E+ RGITI ++ Y H ++ D PGH D+ V +DGAILV
Sbjct: 340 EKARGITINTSHVEYDTPTRHYAHV-DCPGHADY---------VKNMITGAAQMDGAILV 389
Query: 81 LCAVGGVQSQT---LTVNRQMKRYDVPCIA-FINKLD 113
+ A G QT + + RQ+ VP I F+NK D
Sbjct: 390 VAATDGPMPQTREHILLGRQV---GVPYIIVFLNKCD 423
Score = 32.2 bits (73), Expect = 1.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 150 NIGISAHIDSGKTTLTERI 168
N+G H+D GKTTLT I
Sbjct: 298 NVGTIGHVDHGKTTLTAAI 316
Score = 29.1 bits (65), Expect = 9.0
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 446 TPVLVGTALK-----NKGVQT---LLDAVLDYLPNP 473
TP++ G+ALK + L + Y+P P
Sbjct: 452 TPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 61.4 bits (150), Expect = 7e-10
Identities = 48/144 (33%), Positives = 65/144 (45%), Gaps = 32/144 (22%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
N+G H+D GKTTLT I T ++E + K +D+ ER RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAAI---TKILAEGGGAKFKKY--EEIDNAPEERARGITINAAHV 59
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILVLCAVGGVQSQT-- 308
Y+ H + D PGH D+ V LDG ILV+ A G QT
Sbjct: 60 EYSTAARHYAH-TDCPGHADY---------VKNMITGTAPLDGCILVVAANDGPMPQTRE 109
Query: 309 -LTVNRQMKRYDVPCIA-FINKLD 330
L + RQ+ V + ++NK D
Sbjct: 110 HLLLARQI---GVEHVVVYVNKAD 130
Score = 44.5 bits (106), Expect = 1e-04
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 27/97 (27%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILV 80
ER RGITI +A Y+ H + D PGH D+ V LDG ILV
Sbjct: 47 ERARGITINAAHVEYSTAARHYAHT-DCPGHADY---------VKNMITGTAPLDGCILV 96
Query: 81 LCAVGGVQSQT---LTVNRQMKRYDVPCIA-FINKLD 113
+ A G QT L + RQ+ V + ++NK D
Sbjct: 97 VAANDGPMPQTREHLLLARQI---GVEHVVVYVNKAD 130
Score = 31.4 bits (72), Expect = 1.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 150 NIGISAHIDSGKTTLTERI 168
N+G H+D GKTTLT I
Sbjct: 5 NVGTIGHVDHGKTTLTAAI 23
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 58.4 bits (142), Expect = 6e-09
Identities = 25/257 (9%), Positives = 54/257 (21%), Gaps = 99/257 (38%)
Query: 151 IGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDS 210
+G S H + L R + N+ I S
Sbjct: 1 MGSSHHHHHHSSGLVPRG-------------------------SHMA---NVAIIGTEKS 32
Query: 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270
G+T+L + ++G + + N+
Sbjct: 33 GRTSLAANL-----------------------------GKKGTSSDITMYNNDKEGRNMV 63
Query: 271 IIDTPGHVDFTVEVERALRV---------LDGAILVLCAVGGVQSQT---LTVNRQMKRY 318
+D + + D A+L G+ + T + +
Sbjct: 64 FVDAHSYPKT---------LKSLITALNISDIAVLC-IPPQGLDAHTGECIIALDLL--- 110
Query: 319 DVP-CIAFINKLDRLGADPYR---VINQMRQKVGHNAAFLQIPIGLGSETKG-------- 366
I + + D + + +++ + K
Sbjct: 111 GFKHGIIALTRSDS--THMHAIDELKAKLKVIT-SGTVLQDWECISLNTNKSAKNPFEGV 167
Query: 367 --IIDLIQRKAIYFEGP 381
+ I A E
Sbjct: 168 DELKARINEVAEKIEAE 184
Score = 40.6 bits (96), Expect = 0.002
Identities = 10/96 (10%), Positives = 25/96 (26%), Gaps = 26/96 (27%)
Query: 31 ERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRV---------LDGAILVL 81
++G + + N+ +D + + D A+L
Sbjct: 41 LGKKGTSSDITMYNNDKEGRNMVFVDAHSYPKT---------LKSLITALNISDIAVLC- 90
Query: 82 CAVGGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 113
G+ + T + + I + + D
Sbjct: 91 IPPQGLDAHTGECIIALDLL---GFKHGIIALTRSD 123
Score = 30.2 bits (69), Expect = 3.9
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 148 IRNIGISAHIDSGKTTLTERI 168
+ N+ I SG+T+L +
Sbjct: 21 MANVAIIGTEKSGRTSLAANL 41
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 56.4 bits (137), Expect = 4e-08
Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 25/153 (16%)
Query: 35 GITIQS--AATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL 92
GIT Q A +L I +DTPGH F+ R +V D ILV+ A GV QT+
Sbjct: 36 GIT-QHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV 94
Query: 93 TVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEH--KPIEY--- 147
+ K VP + INK D+ ADP +V + L + +Y
Sbjct: 95 ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKE-------------LLAYDVVCEDYGGD 141
Query: 148 IRNIGISAHIDSGKTTLTERILFYTGRISEMHE 180
++ + +SA L E + ++EM E
Sbjct: 142 VQAVHVSALTGENMMALAEATIA----LAEMLE 170
Score = 56.1 bits (136), Expect = 4e-08
Identities = 48/139 (34%), Positives = 64/139 (46%), Gaps = 24/139 (17%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQS--AATYTLW 264
H+D GKTTL +++ R K V A ME GIT Q A +L
Sbjct: 12 HVDHGKTTLLDKL-------------R-KTQVAA----ME---AGGIT-QHIGAFLVSLP 49
Query: 265 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIA 324
I +DTPGH F+ R +V D ILV+ A GV QT+ + K VP +
Sbjct: 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVL 109
Query: 325 FINKLDRLGADPYRVINQM 343
INK D+ ADP +V ++
Sbjct: 110 AINKCDKAEADPEKVKKEL 128
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 54.8 bits (133), Expect = 1e-07
Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 23/140 (16%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKD 266
H+D GKT+L E I R V + GIT Q Y + +
Sbjct: 12 HVDHGKTSLLEYI-------------R-STKVAS-------GEAGGIT-QHIGAYHVETE 49
Query: 267 HN-INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF 325
+ I +DTPGH FT R + D +LV+ A GV QT+ + K VP +
Sbjct: 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVA 109
Query: 326 INKLDRLGADPYRVINQMRQ 345
+NK+D+ ADP RV N++ Q
Sbjct: 110 VNKIDKPEADPDRVKNELSQ 129
Score = 54.1 bits (131), Expect = 2e-07
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 35 GITIQSAATYTLWKDHN-INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 93
GIT Q Y + ++ I +DTPGH FT R + D +LV+ A GV QT+
Sbjct: 36 GIT-QHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIE 94
Query: 94 VNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPI------EY 147
+ K VP + +NK+D+ ADP RV N+ LS++ + E
Sbjct: 95 AIQHAKAAQVPVVVAVNKIDKPEADPDRVKNE-------------LSQYGILPEEWGGES 141
Query: 148 IRNIGISAHIDSGKTTLTERIL 169
+ +SA +G L + IL
Sbjct: 142 Q-FVHVSAKAGTGIDELLDAIL 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 53.8 bits (130), Expect = 2e-07
Identities = 38/180 (21%), Positives = 57/180 (31%), Gaps = 63/180 (35%)
Query: 207 HIDSGKTTLTERILFYTGRISEMHEVRGKDNV------------GAVMDSMELERQRGIT 254
H+D GKTTL + I RG V GA M++
Sbjct: 13 HVDHGKTTLLDHI-------------RGS-AVASREAGGITQHIGATEIPMDVIEGICGD 58
Query: 255 IQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR-----VLDGAILVLCAVGGVQSQTL 309
+ + IDTPGH FT LR + D AIL++ G + QT
Sbjct: 59 FLKKFSIRE-TLPGLFFIDTPGHEAFT-----TLRKRGGALADLAILIVDINEGFKPQTQ 112
Query: 310 TVNRQMKRYDVPCIAFINKLDRLG--------------------------ADPYRVINQM 343
++ Y P + NK+DR+ Y ++ ++
Sbjct: 113 EALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKL 172
Score = 50.7 bits (122), Expect = 2e-06
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 36/110 (32%)
Query: 48 KDHNINIIDTPGHVDFTVEVERALR-----VLDGAILVLCAVGGVQSQTLTVNRQMKRYD 102
+ IDTPGH FT LR + D AIL++ G + QT ++ Y
Sbjct: 68 TLPGLFFIDTPGHEAFT-----TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 103 VPCIAFINKLDRLG--------------------------ADPYRVINQM 126
P + NK+DR+ Y ++ ++
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKL 172
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 50.3 bits (121), Expect = 2e-06
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 21/141 (14%)
Query: 201 NIGISAHIDSGKTTLTERILFYTG-----RISEMHEVRGKDNVGAVMDSMELERQRGITI 255
NIG+ H+D GKTTL + I TG ++ G +
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCES----CKKPEAYVTEPSC 62
Query: 256 QSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQT---LT 310
+S + I+ ID PGH + ++DGAILV+ A Q QT
Sbjct: 63 KSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFV 122
Query: 311 VNRQMKRYDVPCIA-FINKLD 330
+ V + NK+D
Sbjct: 123 ALGIIG---VKNLIIVQNKVD 140
Score = 35.7 bits (83), Expect = 0.071
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-Q 88
+ +S + I+ ID PGH + ++DGAILV+ A Q
Sbjct: 55 AYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQ 114
Query: 89 SQT---LTVNRQMKRYDVPCIA-FINKLD 113
QT + V + NK+D
Sbjct: 115 PQTREHFVALGIIG---VKNLIIVQNKVD 140
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 50.3 bits (121), Expect = 2e-06
Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 49/158 (31%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
NIG+ H+D GKTTLT+ ++ + + E +RGITI+ A
Sbjct: 12 NIGMVGHVDHGKTTLTK-------ALTGVWTDTHSE-----------ELRRGITIKIGFA 53
Query: 260 TYTLWKDHNINIIDTPGHVDFTVEVERALR----------------------VLDGAILV 297
+ + N T + +R ++DGAILV
Sbjct: 54 DAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILV 113
Query: 298 LCAVGGV-QSQT---LTVNRQMKRYDVPCIA-FINKLD 330
+ A + QT L + + I NK++
Sbjct: 114 IAANEPCPRPQTREHLMALQIIG---QKNIIIAQNKIE 148
Score = 36.1 bits (84), Expect = 0.065
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 31/111 (27%)
Query: 31 ERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALR----------------- 72
E +RGITI+ A + + N T + +R
Sbjct: 41 ELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTM 100
Query: 73 -----VLDGAILVLCAVGGV-QSQT---LTVNRQMKRYDVPCIA-FINKLD 113
++DGAILV+ A + QT L + + I NK++
Sbjct: 101 LAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG---QKNIIIAQNKIE 148
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 50.0 bits (120), Expect = 2e-06
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 49/158 (31%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-A 259
NIG+ H+D GKT+LT+ ++ + R + E +RGI+I+ A
Sbjct: 10 NIGMVGHVDHGKTSLTK-------ALTGVWTDRHSE-----------ELRRGISIRLGYA 51
Query: 260 TYTLWKDHN----------------------INIIDTPGHVDFTVEVERALRVLDGAILV 297
+ K ++ +D+PGH + ++DGAILV
Sbjct: 52 DCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILV 111
Query: 298 LCAVGGV-QSQT---LTVNRQMKRYDVPCIA-FINKLD 330
+ A Q QT L + + I NK+D
Sbjct: 112 IAANEPCPQPQTKEHLMALEILG---IDKIIIVQNKID 146
Score = 35.3 bits (82), Expect = 0.11
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 31/111 (27%)
Query: 31 ERQRGITIQSA-ATYTLWKDHN----------------------INIIDTPGHVDFTVEV 67
E +RGI+I+ A + K ++ +D+PGH +
Sbjct: 39 ELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATM 98
Query: 68 ERALRVLDGAILVLCAVGGV-QSQT---LTVNRQMKRYDVPCIA-FINKLD 113
++DGAILV+ A Q QT L + + I NK+D
Sbjct: 99 LSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG---IDKIIIVQNKID 146
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative,
midwest center for structural genomics, GTP-BIN
nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio
parahaemolyticus}
Length = 332
Score = 45.2 bits (107), Expect = 6e-05
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 934 QILEPIMSVEISTPIEFQGSVLNLVTKRHGILQG-NEGKDDWVTIYAEIPLNDMFGFAGD 992
Q++EP +V I E QG ++ + R G L V + +P + GF +
Sbjct: 122 QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTE 181
Query: 993 LRSSTQGKGEFSMDYSRYSP 1012
+ T G G + Y P
Sbjct: 182 FMTLTSGSGLLYHTFDHYGP 201
Score = 44.5 bits (105), Expect = 1e-04
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 37/174 (21%)
Query: 577 GDTFVTDKNNSISLESIYVADPVVSMSIKAVNN-------KDRDNFSKAVQRFTKE---- 625
DT + +N +L ++ V +P V+M+ VN ++R KE
Sbjct: 12 SDT-ICAQNAVEALPALSVDEPTVTMTF-QVNTSPFAGXEGXFVTSRNILERLEKELVHN 69
Query: 626 -----DPTFHFFYDPESKET-LVSGMGELHLEIYAQRMERE-YNCPVVLGKPKVAFKE-- 676
+ T + + VSG GELHL I + M RE + V +P+V E
Sbjct: 70 VALRVEQT-------DDPDKFRVSGRGELHLSILIENMRREGFELAV--SRPEVIIXEED 120
Query: 677 -TLVQPFD---FDYLHKKQSGGSGQYGRVIGTLEPLPPSAN--TKLEFIDETVG 724
L++PF+ D + + Q G G G L + P +++FI + G
Sbjct: 121 GQLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRG 174
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 38.5 bits (89), Expect = 0.011
Identities = 12/120 (10%), Positives = 30/120 (25%), Gaps = 13/120 (10%)
Query: 37 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL---RVLDGAILVLCAVGGVQSQTLT 93
Y N+ D PG + L + + ++ + + +
Sbjct: 107 VTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDID 166
Query: 94 VNRQMKRYDVPCIAFINKLDRLGA----------DPYRVINQMRQKTSRWISNESLSEHK 143
+ + + K+D D +V+ +R ++E
Sbjct: 167 IAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPP 226
Score = 37.8 bits (87), Expect = 0.016
Identities = 12/117 (10%), Positives = 29/117 (24%), Gaps = 13/117 (11%)
Query: 254 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERAL---RVLDGAILVLCAVGGVQSQTLT 310
Y N+ D PG + L + + ++ + + +
Sbjct: 107 VTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDID 166
Query: 311 VNRQMKRYDVPCIAFINKLDRLGA----------DPYRVINQMRQKVGHNAAFLQIP 357
+ + + K+D D +V+ +R + I
Sbjct: 167 IAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 36.8 bits (86), Expect = 0.036
Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 27/147 (18%)
Query: 52 INIIDTPG--HVDFTVE---VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY----- 101
+ DT G +E + R+ + A L+L + + +++
Sbjct: 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP 342
Query: 102 DVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGK 161
+ NKLDR + + I ISA G
Sbjct: 343 AAKFLTVANKLDRAANADALIRAIADGTGTEVIG-----------------ISALNGDGI 385
Query: 162 TTLTERILFYTGRISEMHETSRWISNE 188
TL + + + ++HE S +++
Sbjct: 386 DTLKQHMGDLVKNLDKLHEASVLVTSL 412
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.089
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 583 DKNNSIS-LES---IYVADPVVSMSIKA 606
+K ++ L++ +Y D +++IKA
Sbjct: 18 EKQ-ALKKLQASLKLYADDSAPALAIKA 44
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 34.0 bits (79), Expect = 0.29
Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 28/145 (19%)
Query: 52 INIIDTPG--HVDFTVE---VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-DVPC 105
+ ++DT G VE VER+ + + A LVL + T ++ P
Sbjct: 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPL 333
Query: 106 IAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLT 165
I +NK+D + SL + I I + +A G +L
Sbjct: 334 ILVMNKIDLVEK----------------QLITSLEYPENITQI--VHTAAAQKQGIDSLE 375
Query: 166 ERI--LFYTGRISEMHETSRWISNE 188
I + TG++ N+
Sbjct: 376 TAILEIVQTGKVQ--AADMDLAINQ 398
Score = 29.8 bits (68), Expect = 5.5
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 269 INIIDTPG--HVDFTVE---VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-DVPC 322
+ ++DT G VE VER+ + + A LVL + T ++ P
Sbjct: 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPL 333
Query: 323 IAFINKLDRLGADP 336
I +NK+D +
Sbjct: 334 ILVMNKIDLVEKQL 347
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 33.5 bits (76), Expect = 0.30
Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 34/193 (17%)
Query: 159 SGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTER 218
SGKTTLT L ++ + Y+ N+ + ++ R
Sbjct: 25 SGKTTLTGEF------------------GRYLEDNYKVAYV-NLDTGVKELPYEPSIDVR 65
Query: 219 ILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPG-- 276
I M E G GA+++S + ++ + ++ + +IDTPG
Sbjct: 66 EFVTVEEI--MREGYG--PNGAIVESYDRLMEKFNEYLNKILRLEKENDYV-LIDTPGQM 120
Query: 277 ----HVDFTVEVERALRVLDGAILV----LCAVGGVQSQTLTVNRQMKRYDVPCIAFINK 328
+F V + L + L R I +NK
Sbjct: 121 ETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNK 180
Query: 329 LDRLGADPYRVIN 341
+D L +
Sbjct: 181 VDLLSEEEKERHR 193
Score = 29.3 bits (65), Expect = 6.0
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 48 KDHNINIIDTPG------HVDFTVEVERALRVLDGAILV----LCAVGGVQSQTLTVNRQ 97
K+++ +IDTPG +F V + L + L
Sbjct: 107 KENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLI 166
Query: 98 MKRYDVPCIAFINKLDRLGADPYRVIN 124
R I +NK+D L +
Sbjct: 167 DLRLGATTIPALNKVDLLSEEEKERHR 193
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function;
2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Length = 217
Score = 32.6 bits (74), Expect = 0.51
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
Query: 919 AAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIY 978
A G + QA + Q P+ + + L+ + N +V +
Sbjct: 119 AYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALL-GQCDGKIINSDYQAFVLLR 177
Query: 979 AEIPLNDMFGFAGDLRSSTQGKGEF 1003
+P + F+ L ++G +
Sbjct: 178 VALPAAKVAEFSAKLADFSRGSLQL 202
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 29.9 bits (68), Expect = 0.61
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
EILG + S++D+KKA RR L KF P
Sbjct: 11 EILGV----SRGASDEDLKKAYRR--LALKFHP 37
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 32.9 bits (76), Expect = 0.61
Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 25/144 (17%)
Query: 52 INIIDTPG---HVDFTVE---VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-DVP 104
I+DT G + VE +ER L+ ++ A +VL + + ++R +
Sbjct: 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKR 352
Query: 105 CIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTL 164
+ INK+D + I + ISA G L
Sbjct: 353 YLVVINKVDVVEKINEEEIKNKLGTDRHMVK-----------------ISALKGEGLEKL 395
Query: 165 TERILFYTGRISEMHETSRWISNE 188
E I T I E I+N
Sbjct: 396 EESIYRETQEIFERGS-DSLITNL 418
Score = 30.2 bits (69), Expect = 4.2
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 14/130 (10%)
Query: 269 INIIDTPG---HVDFTVE---VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-DVP 321
I+DT G + VE +ER L+ ++ A +VL + + ++R +
Sbjct: 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKR 352
Query: 322 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI----PIGLGSETKGIIDLIQRKAIY 377
+ INK+D + +++ K+G + ++I GL + I Q
Sbjct: 353 YLVVINKVDVVEKIN---EEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQEIFER 409
Query: 378 FEGPLGDNLR 387
L NLR
Sbjct: 410 GSDSLITNLR 419
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 32.5 bits (73), Expect = 0.79
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 13/95 (13%)
Query: 51 NINIIDTPGHVD-------FTVEVERALRVL----DGAILVLCAVGGVQSQTL-TVNRQM 98
+I+IIDTPG + + LR D IL+ A S +
Sbjct: 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL 214
Query: 99 KRYDVPCIAFINKLDRLGA-DPYRVINQMRQKTSR 132
+ ++ +NK D + RV + +
Sbjct: 215 RGHEDKIRVVLNKADMVETQQLMRVYGALMWALGK 249
Score = 32.1 bits (72), Expect = 1.0
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 268 NINIIDTPGHVD-------FTVEVERALRVL----DGAILVLCAVGGVQSQTL-TVNRQM 315
+I+IIDTPG + + LR D IL+ A S +
Sbjct: 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL 214
Query: 316 KRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVG 348
+ ++ +NK D + RV + +G
Sbjct: 215 RGHEDKIRVVLNKADMVETQQLMRVYGALMWALG 248
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 32.3 bits (74), Expect = 0.82
Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 32/201 (15%)
Query: 269 INIIDTPGHVDFTV-------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 321
+ ++DTPG D + R D ILV + + K ++P
Sbjct: 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVV--NLFKEMEIP 142
Query: 322 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGI-IDLIQRKAIYFEG 380
+ +NK+D LG + + + + S + D I K I
Sbjct: 143 FVVVVNKIDVLGEKAEELKGLYESRYEAKV----LLV---SALQKKGFDDI-GKTISEIL 194
Query: 381 PLGDNLRIEEIPADLKKEAESKR-QELIEHVAEGDEILGEMFLEEK--------SISEDD 431
P + + DL + I+ A ++ + ++ +
Sbjct: 195 PGDEEIP---YLGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREALDREAIALVVKE 251
Query: 432 IKKAIRRSTLTRKFTPVLVGT 452
+ + K P LV T
Sbjct: 252 RELRYVMENIGMK--PKLVIT 270
Score = 31.2 bits (71), Expect = 2.2
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 52 INIIDTPGHVDFTV-------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 104
+ ++DTPG D + R D ILV + + K ++P
Sbjct: 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVV--NLFKEMEIP 142
Query: 105 CIAFINKLDRLGADP 119
+ +NK+D LG
Sbjct: 143 FVVVVNKIDVLGEKA 157
Score = 30.8 bits (70), Expect = 2.8
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 430 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVT 477
+ + ++ +R VL+ +AL+ KG + + + LP E+
Sbjct: 154 GEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEIP 201
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative
splicing, phosphoprotein, protein complex, disease
mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Length = 70
Score = 29.5 bits (66), Expect = 0.84
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 398 EAESKRQELIE---------HVAEGDEILGEMFLEEKSISEDDIKKAIRRS 439
E R+ LI V + FL++K +++++I A ++S
Sbjct: 9 ENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQS 59
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group
I intron; HET: TYR; 1.95A {Neurospora crassa} PDB:
2rkj_A
Length = 392
Score = 32.3 bits (74), Expect = 0.96
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 17/57 (29%)
Query: 651 EIYAQRMEREYNCPVVLGKPKVAFKE---TLVQPFDFDYLHKK-----QSGGSGQYG 699
+ +M + V+F E ++Q +D+ L + Q GGS QYG
Sbjct: 197 DTVKNKMTQGDG---------VSFAEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYG 244
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11
d.58.11.2
Length = 191
Score = 31.4 bits (71), Expect = 0.97
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 1/88 (1%)
Query: 916 FILAAHGAMKQAYEEGVWQILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWV 975
+ A G +A L + + P G V L+ R + + V
Sbjct: 104 LVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARALKAEETYTPEG-V 162
Query: 976 TIYAEIPLNDMFGFAGDLRSSTQGKGEF 1003
+P + GF L +T+G+
Sbjct: 163 RFALLLPKPEREGFLRALLDATRGQVAL 190
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 29.6 bits (67), Expect = 1.1
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
+ILG KS SE IKKA + L K+ P
Sbjct: 11 DILGV----PKSASERQIKKAFHK--LAMKYHP 37
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin,
3 helices bundle, protein transport; HET: DPW; 1.80A
{Rattus norvegicus}
Length = 54
Score = 28.6 bits (64), Expect = 1.2
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 398 EAESKRQELIE---------HVAEGDEILGEMFLEEKSISEDDIKKAIRRS 439
+ R+ LI V + FL++K +++++I A ++S
Sbjct: 4 GSPEFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQS 54
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 29.1 bits (66), Expect = 1.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
+ILG ++ S+ +IKKA + L +K+ P
Sbjct: 11 QILGV----PRNASQKEIKKAYYQ--LAKKYHP 37
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
+LG ++ S+ DIKKA ++ L R++ P
Sbjct: 21 RVLGV----SRTASQADIKKAYKK--LAREWHP 47
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 29.3 bits (66), Expect = 1.5
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRR 438
++ + + E + KK IRR
Sbjct: 20 SVVEQ----AWKLPESERKKIIRR 39
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; HET: AZY; 1.80A {Escherichia
coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Length = 322
Score = 31.4 bits (72), Expect = 1.7
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 16/64 (25%)
Query: 651 EIYAQRMEREYNCPVVLGKPKVAFKE---TLVQPFDFDYLHKK-----QSGGSGQYGRVI 702
E QR+ RE ++F E L+Q +DF L+K+ GGS Q+G +
Sbjct: 155 EAVKQRLNREDQ--------GISFTEFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNIT 206
Query: 703 GTLE 706
++
Sbjct: 207 SGID 210
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 31.4 bits (72), Expect = 1.7
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 18/57 (31%)
Query: 651 EIYAQRMEREYNCPVVLGKPKVAFKE---TLVQPFDFDYLHKK-----QSGGSGQYG 699
+ +R+ E +++ E L+Q D+ LH++ Q GG+ Q+G
Sbjct: 153 DTIRRRLAGE----------GISYTEFSYLLLQANDYVELHRRHGCTLQIGGADQWG 199
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 30.4 bits (68), Expect = 1.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 151 IGISAHIDSGKTTLTERIL 169
+ + SGKTTL E+ +
Sbjct: 7 WQVVGYKHSGKTTLMEKWV 25
Score = 30.4 bits (68), Expect = 1.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 202 IGISAHIDSGKTTLTERIL 220
+ + SGKTTL E+ +
Sbjct: 7 WQVVGYKHSGKTTLMEKWV 25
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 31.1 bits (71), Expect = 1.9
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 87 VQSQTLTVN---RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHK 143
+ + R++ P + +NK+D++ D Y+ ++ + + + S
Sbjct: 274 LIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP------- 326
Query: 144 PIEYIRNIGISAHIDSGKTTLTERI 168
I ISA + L ++I
Sbjct: 327 ---IFDVIPISALKRTNLELLRDKI 348
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 28.9 bits (65), Expect = 2.3
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
ILG + S + D+K+ ++ L + P
Sbjct: 20 SILGA----DPSANMSDLKQKYQK--LILLYHP 46
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 28.3 bits (64), Expect = 2.4
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
+ LG + S+++IK+A RR ++ P
Sbjct: 7 QTLGL----ARGASDEEIKRAYRR--QALRYHP 33
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 28.4 bits (64), Expect = 3.0
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
E+L + S + IKKA R+ L K+ P
Sbjct: 13 EVLDV----PRQASSEAIKKAYRK--LALKWHP 39
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.6 bits (66), Expect = 3.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 151 IGISAHIDSGKTTLTERIL 169
+ I DSGKTTL R++
Sbjct: 5 LSIVGTSDSGKTTLITRMM 23
Score = 29.6 bits (66), Expect = 3.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 202 IGISAHIDSGKTTLTERIL 220
+ I DSGKTTL R++
Sbjct: 5 LSIVGTSDSGKTTLITRMM 23
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 28.9 bits (65), Expect = 3.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
+LG +K+ + DDIKK+ R+ L K+ P
Sbjct: 21 HVLGL----DKNATSDDIKKSYRK--LALKYHP 47
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase,
protein-substrate complex, ATP-BI ligase, mitochondrion,
nucleotide-binding, protein biosynth; HET: YSA; 2.20A
{Homo sapiens} PDB: 3zxi_A*
Length = 356
Score = 30.3 bits (69), Expect = 3.2
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 17/57 (29%)
Query: 651 EIYAQRMEREYNCPVVLGKPKVAFKE---TLVQPFDFDYLHKK-----QSGGSGQYG 699
+ R++ ++ E ++Q +DF YL ++ Q GGS Q G
Sbjct: 175 QSVQLRLKSPEG---------MSLAEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLG 222
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 28.4 bits (64), Expect = 3.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
E+LG + S S +DIKKA R+ L ++ P
Sbjct: 13 EVLGV----QASASPEDIKKAYRK--LALRWHP 39
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 29.4 bits (67), Expect = 3.7
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 52 INIIDTPG--HVDFTVE---VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY----- 101
++IIDT G VE +ERA + ++ A VL V G + + +
Sbjct: 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP 113
Query: 102 -DVPCIAFINKLDRLGADP 119
+P NK D G
Sbjct: 114 AKLPITVVRNKADITGETL 132
Score = 29.4 bits (67), Expect = 3.7
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 269 INIIDTPG--HVDFTVE---VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY----- 318
++IIDT G VE +ERA + ++ A VL V G + + +
Sbjct: 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP 113
Query: 319 -DVPCIAFINKLDRLGADP 336
+P NK D G
Sbjct: 114 AKLPITVVRNKADITGETL 132
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 28.5 bits (64), Expect = 3.7
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
EIL +S S DDIKKA RR ++ P
Sbjct: 6 EILDV----PRSASADDIKKAYRR--KALQWHP 32
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 28.3 bits (64), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
EILG K+ E +I+KA +R L K+ P
Sbjct: 7 EILGV----SKTAEEREIRKAYKR--LAMKYHP 33
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 28.2 bits (63), Expect = 4.2
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
++LG + ++ IK A R + P
Sbjct: 21 DLLGV----PSTATQAQIKAAYYR--QCFLYHP 47
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 28.2 bits (63), Expect = 4.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
++LG + S D++ KA R+ L P
Sbjct: 31 DMLGV----KPGASRDEVNKAYRK--LAVLLHP 57
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 30.0 bits (66), Expect = 4.8
Identities = 30/195 (15%), Positives = 56/195 (28%), Gaps = 22/195 (11%)
Query: 266 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT----VNRQMKRYDVP 321
I I+D+PG D E +L ++ +L + Q TL + +K +
Sbjct: 173 QKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT 232
Query: 322 CIAFINKLDRLGADPY---------RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQ 372
+N D++ N++RQ N A G + + +L
Sbjct: 233 VFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSS 292
Query: 373 RKA----IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGD-----EILGEMFLE 423
+A + D + L +R E
Sbjct: 293 IQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRERAIAELRQVRTLARLACNHTREAVAR 352
Query: 424 EKSISEDDIKKAIRR 438
+ E D+ + +R
Sbjct: 353 RIPLLEQDVNELKKR 367
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 28.2 bits (63), Expect = 4.9
Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
+LG ++ S + I + + P
Sbjct: 24 TLLGC----DELSSVEQILAEFKV--RALECHP 50
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 29.4 bits (67), Expect = 5.5
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 22/123 (17%)
Query: 249 RQRGITIQSAATYTLWKDHNINIIDTPG-HVDFTVE------VERALRVLDGAILVLCAV 301
R G+ + + I +DTPG + + VE A + L+ A ++L +
Sbjct: 48 RVLGV-------KNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMI 100
Query: 302 GGVQSQT----LTVNRQMKRYDVPCIAFINKLDRLG--ADPYRVINQMRQKVGHNAAFLQ 355
+ +K + P I INK+D++G + +I+++ +K
Sbjct: 101 DATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI-- 158
Query: 356 IPI 358
+PI
Sbjct: 159 VPI 161
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 29.8 bits (68), Expect = 5.6
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 26/86 (30%)
Query: 383 GDNLRIEEIPADLKKEAESKR-----QELIEHVAEGDEIL---GEMFLEEKSISEDDIKK 434
G+ ++ L +++ + V + D IL G + L+ + D I+
Sbjct: 99 GEVVKF-----KLSDKSDGTYIPVPNKAFFSAVEQNDVILMLDGRLRLKVTNTGSDWIE- 152
Query: 435 AIRRSTLTRKFTPVLVGTALKN-KGV 459
+ K +
Sbjct: 153 -----------AVAESSGVITGGKAI 167
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA
repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis}
PDB: 3gab_A* 3kdk_A*
Length = 197
Score = 29.0 bits (66), Expect = 5.7
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 20/98 (20%)
Query: 381 PLGDN-LRIEEIPADLKK-EAESKRQELIEHVAEGDEILGEMFLEEKSISEDDI--KKAI 436
G N + PA K E +E+I+ V + I + EE +I + K +I
Sbjct: 91 SFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKNIDIKKLREEAAIM---MSCKGSI 147
Query: 437 RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPG 474
+ L+N ++ LLD L +P
Sbjct: 148 KA------------NRHLRNDEIKALLDD-LRSTSDPF 172
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 27.8 bits (62), Expect = 6.8
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 415 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTP 447
++L + + + + KA R L RK P
Sbjct: 19 DVLE---VNREEFDKQKLAKAYRA--LARKHHP 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 8.4
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 17/62 (27%)
Query: 385 NLRIEEIPA-------DLKKEAE-------SKRQELIEHVAEGDEILGEMFLEEKSISED 430
R++E+ A + +++A+ ++ E +E + I + F ++ +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP---DA 151
Query: 431 DI 432
DI
Sbjct: 152 DI 153
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 8.9
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 394 DLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFT-----PV 448
+LK+ R+EL+E + E LE K ++ + A + + + P
Sbjct: 736 ELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPE 795
Query: 449 LVGTALKNKGVQTLLDAVLD 468
L + L+ +LD
Sbjct: 796 LKPYKQVKQIAPAELEGLLD 815
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.267 0.0688 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,195,742
Number of extensions: 1032319
Number of successful extensions: 2771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2618
Number of HSP's successfully gapped: 214
Length of query: 1043
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 940
Effective length of database: 3,825,930
Effective search space: 3596374200
Effective search space used: 3596374200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)