RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11896
(1043 letters)
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 296 bits (759), Expect = 2e-93
Identities = 140/278 (50%), Positives = 193/278 (69%), Gaps = 3/278 (1%)
Query: 195 PIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGIT 254
++ +RNIGI+AHID+GKTT TERIL+YTGRI ++ EV A MD ME ER+RGIT
Sbjct: 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG---AATMDFMEQERERGIT 58
Query: 255 IQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 314
I +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ
Sbjct: 59 ITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ 118
Query: 315 MKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRK 374
++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ K
Sbjct: 119 AEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMK 178
Query: 375 AIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKK 434
A + LG ++R IP + +A ++L+E A+ DE + +LE + +E+++
Sbjct: 179 AYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVA 238
Query: 435 AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPN 472
AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+
Sbjct: 239 AIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS 276
Score = 117 bits (293), Expect = 1e-29
Identities = 64/110 (58%), Positives = 81/110 (73%)
Query: 22 GAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL 81
A MD ME ER+RGITI +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V
Sbjct: 43 AATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVF 102
Query: 82 CAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTS 131
+ GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M+++
Sbjct: 103 DSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLG 152
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 213 bits (544), Expect = 2e-63
Identities = 73/274 (26%), Positives = 129/274 (47%), Gaps = 8/274 (2%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
IR + + H SGKTTLTE +L+ TG V D + T+++
Sbjct: 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGT---TTTDYTPEAKLHRTTVRTG 58
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 318
L++ H + ++D PG+ DF E+ AL D A++ + A GVQ T +R
Sbjct: 59 VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL 118
Query: 319 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF 378
+P + + KLD+ Y + + + + +P+ G + G+ID+ KA +
Sbjct: 119 GLPRMVVVTKLDK--GGDYYALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRY 176
Query: 379 EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438
E R E+P + ++ + RQE++E + E DE L E +LE + ++ + ++KA
Sbjct: 177 EN---GEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHE 233
Query: 439 STLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPN 472
+ PV + + + GV LL+ +L+ LP+
Sbjct: 234 AVRRGLLYPVALASGEREIGVLPLLELILEALPS 267
Score = 50.3 bits (119), Expect = 4e-07
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 14 QVRGKDNVG-AVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR 72
+ RG+ G D + T+++ L++ H + ++D PG+ DF E+ AL
Sbjct: 30 ERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALE 89
Query: 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 126
D A++ + A GVQ T +R +P + + KLD+ G + +
Sbjct: 90 AADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGDYYALLEDLR 143
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 166 bits (421), Expect = 6e-46
Identities = 78/326 (23%), Positives = 125/326 (38%), Gaps = 46/326 (14%)
Query: 196 IEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITI 255
+ +RN+ + AH+D GK+TLT+ ++ G IS D+ + E++RGITI
Sbjct: 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEA-----RFTDTRKDEQERGITI 68
Query: 256 QSAATY----------------TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLC 299
+S A T IN+ID+PGHVDF+ EV ALRV DGA++V+
Sbjct: 69 KSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 128
Query: 300 AVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIG 359
+ GV QT TV RQ + + INK+DR + + Q + + +
Sbjct: 129 TIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVS 188
Query: 360 LGSETK--GIIDLIQRKAIYF-EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEI 416
++ + R + F G G I + K+ + ++++
Sbjct: 189 TYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDR------- 241
Query: 417 LGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEV 476
L S KK + T G L+ +LD +
Sbjct: 242 -----LWGDSFFNPKTKKWTNKDTDAE-------GKPLERAFNMFILDPIFRLFTAIMNF 289
Query: 477 TNYAIENGQEDKKVVLNP---SRDGK 499
I E ++VL +GK
Sbjct: 290 KKDEIPVLLEKLEIVLKGDEKDLEGK 315
Score = 100 bits (250), Expect = 2e-23
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATY----------------TLWKD 49
++ K D+ + E++RGITI+S A T
Sbjct: 36 SLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 95
Query: 50 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFI 109
IN+ID+PGHVDF+ EV ALRV DGA++V+ + GV QT TV RQ + + I
Sbjct: 96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVI 155
Query: 110 NKLDRLGADPYRVINQMRQKTSR 132
NK+DR + + Q +R
Sbjct: 156 NKVDRALLELQVSKEDLYQTFAR 178
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 148 bits (375), Expect = 2e-41
Identities = 54/203 (26%), Positives = 85/203 (41%), Gaps = 15/203 (7%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G H+D GKTTLT + + + EV+ +D ER RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYG----DIDKAPEERARGITINTAHV 60
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
+ + +D PGH D+ + +DGAILV+ A G QT ++ V
Sbjct: 61 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 120
Query: 321 PCI-AFINKLDRLGADPY--RVINQMRQKVG-HNAAFLQIPIGLGSETKGIIDLIQR-KA 375
P I F+NK+D + V ++R + + ++P+ GS + + + K
Sbjct: 121 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 180
Query: 376 IYFEGPLGDNLR------IEEIP 392
E D + E IP
Sbjct: 181 RRGENEWVDKIWELLDAIDEYIP 203
Score = 105 bits (263), Expect = 2e-26
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 6/165 (3%)
Query: 11 KQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERA 70
E + +D ER RGITI +A + + +D PGH D+ +
Sbjct: 28 AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITG 87
Query: 71 LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPY--RVINQMR 127
+DGAILV+ A G QT ++ VP I F+NK+D + V ++R
Sbjct: 88 AAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVR 147
Query: 128 QKTSR---WISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERIL 169
++ + + + + + G+ ++I
Sbjct: 148 DLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIW 192
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 148 bits (375), Expect = 6e-41
Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 24/216 (11%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISE----------MHEVRGKDNVGAVMDSMELERQ 250
N+ + H+DSGK+T T +++ G I + +G V+D ++ ER+
Sbjct: 8 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 67
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
RGITI A + + +ID PGH DF + D AIL++ G ++
Sbjct: 68 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS 127
Query: 311 VNRQMKR-------YDVP-CIAFINKLDRLGADPYRV------INQMRQKVGHNAAFLQI 356
+ Q + V I +NK+D + D R + +KVG+N +
Sbjct: 128 KDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF 187
Query: 357 PIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIP 392
G +I+ Y + +
Sbjct: 188 VPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGK 223
Score = 104 bits (260), Expect = 1e-25
Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 13/176 (7%)
Query: 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65
K E +G V+D ++ ER+RGITI A + + +ID PGH DF
Sbjct: 40 KFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIK 99
Query: 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-------YDVP-CIAFINKLDRLGA 117
+ D AIL++ G ++ + Q + V I +NK+D +
Sbjct: 100 NMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW 159
Query: 118 DPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173
D R Q+ + SN + + + IS T +Y G
Sbjct: 160 DESRF-----QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKG 210
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 127 bits (320), Expect = 4e-34
Identities = 50/197 (25%), Positives = 74/197 (37%), Gaps = 10/197 (5%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+G H+D GKTTLT I K +D+ ER RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGG-----AKFKKYEEIDNAPEERARGITINAAHV 59
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
+ D PGH D+ + LDG ILV+ A G QT ++ V
Sbjct: 60 EYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV 119
Query: 321 -PCIAFINKLDRL--GADPYRVINQMRQKVG-HNAAFLQIPIGLGSETKGIIDLIQRKAI 376
+ ++NK D + V ++R+ + + PI +GS + +
Sbjct: 120 EHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGL 179
Query: 377 YFEGPLGDNLRIEEIPA 393
L D + IP
Sbjct: 180 KSVQKLLDAV-DTYIPV 195
Score = 90.5 bits (224), Expect = 4e-21
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 3/126 (2%)
Query: 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTV 65
I I E K +D+ ER RGITI +A + D PGH D+
Sbjct: 22 AITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81
Query: 66 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRL--GADPYRV 122
+ LDG ILV+ A G QT ++ V + ++NK D + V
Sbjct: 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELV 141
Query: 123 INQMRQ 128
++R+
Sbjct: 142 ELEIRE 147
Score = 28.8 bits (64), Expect = 2.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 429 EDDIKKAIRRSTLTRKFTPVLVGTALKN----------KGVQTLLDAVLDYLPNP 473
E +I++ + + TP++VG+AL K VQ LLDAV Y+P P
Sbjct: 142 ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 128 bits (321), Expect = 6e-34
Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 28/219 (12%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKD----------NVGAVMDSMELERQ 250
N+ + H+D GK+TL R+L G I E ++ ++D ++ ER+
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 251 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT 310
RG+TI K + IID PGH DF + D AILV+ A G ++
Sbjct: 65 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 124
Query: 311 VNRQMKRYDV--------PCIAFINKLDRLGADP--------YRVINQMRQKVGHNAAFL 354
V Q + + + I +NK+D +++ + G N +
Sbjct: 125 VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKV 184
Query: 355 QIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPA 393
+ + I + Y GP + ++++
Sbjct: 185 RFVPVVAPSGDNITHKSENMKWY-NGPTLEEY-LDQLEL 221
Score = 88.7 bits (219), Expect = 2e-20
Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 11/177 (6%)
Query: 5 VKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFT 64
+ ++ + + ++D ++ ER+RG+TI K + IID PGH DF
Sbjct: 36 KEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFV 95
Query: 65 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV--------PCIAFINKLDRLG 116
+ D AILV+ A G ++V Q + + + I +NK+D
Sbjct: 96 KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 155
Query: 117 ADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173
+ +S S +R + + A T +E + +Y G
Sbjct: 156 PPYDEKRYKEIV---DQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNG 209
>d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 114 bits (286), Expect = 2e-30
Identities = 47/121 (38%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 670 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK 729
P+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK
Sbjct: 1 PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPR--GSGFEFVNAIVGGVIPK 58
Query: 730 PFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 789
++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A A+K+A ++
Sbjct: 59 EYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQK 118
Query: 790 G 790
G
Sbjct: 119 G 119
Score = 55.0 bits (132), Expect = 1e-09
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 803 ISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLK-DG 861
I+ P++ +G + G G+ V I E +G +G V G
Sbjct: 9 ITKPVDVEG--------KFIRQTGGRGQYGHVKIKVEPLPRG-------SGFEFVNAIVG 53
Query: 862 DNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAH 921
+ I G ++ + G L G V +++ L DG H VDS+E++F +A
Sbjct: 54 GV--IPKEYIP--AVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGS 109
Query: 922 GAMKQAYEEG 931
A+K+A ++G
Sbjct: 110 MAIKEAVQKG 119
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 107 bits (267), Expect = 9e-27
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 13/182 (7%)
Query: 190 LSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMH-EVRGKDNVGA-------- 240
L +H+ E + ++D GK+TL R+L + I E H E +D+ +
Sbjct: 1 LGQHERKE-MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVD 59
Query: 241 ---VMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 297
++D ++ ER++GITI A Y I DTPGH +T + D AI++
Sbjct: 60 LALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIIL 119
Query: 298 LCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIP 357
+ A GVQ+QT + + I L RV ++ A +
Sbjct: 120 VDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFK 179
Query: 358 IG 359
Sbjct: 180 PT 181
Score = 71.0 bits (173), Expect = 3e-14
Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 4/171 (2%)
Query: 3 HKVKIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVD 62
+ K ++ ++D ++ ER++GITI A Y I DTPGH
Sbjct: 42 EAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQ 101
Query: 63 FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRV 122
+T + D AI+++ A GVQ+QT + + I L RV
Sbjct: 102 YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERV 161
Query: 123 INQMRQKTSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTG 173
++ ++ + + +SA +ER +Y G
Sbjct: 162 FESIKADYLKFAEG----IAFKPTTMAFVPMSALKGDNVVNKSERSPWYAG 208
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 102 bits (255), Expect = 1e-26
Identities = 39/88 (44%), Positives = 56/88 (63%)
Query: 935 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLR 994
ILEPIM VE++TP E+ G V+ + R G + G E + + I A +PL +MFG+A DLR
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLR 61
Query: 995 SSTQGKGEFSMDYSRYSPALPEVQDRLV 1022
S TQG+G F M + Y +VQ++L+
Sbjct: 62 SKTQGRGSFVMFFDHYQEVPKQVQEKLI 89
Score = 52.5 bits (126), Expect = 3e-09
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 794 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
ILEPIM VE++TP E+ G V+ + R G + G E + + I A +
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFV 48
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 96
Score = 96.5 bits (240), Expect = 1e-24
Identities = 27/93 (29%), Positives = 50/93 (53%)
Query: 935 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEIPLNDMFGFAGDLR 994
+LEPI +++ P E G VL+ + R G + G E + ++AE+PL ++ + L
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALP 61
Query: 995 SSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQE 1027
T G G +++++S Y+ P + R+V E +
Sbjct: 62 GLTGGAGAYTLEFSHYAEVPPHLAQRIVQERAQ 94
Score = 49.5 bits (118), Expect = 4e-08
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 794 ILEPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEM 840
+LEPI +++ P E G VL+ + R G + G E + ++AE+
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEV 48
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 75
Score = 95.6 bits (238), Expect = 2e-24
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 595 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYA 654
V +PV+ ++I+ D++ S+A+ R +E PTF PE+ T++SGMGEL LEI
Sbjct: 1 VPEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIV 60
Query: 655 QRMEREYNCPVVLGK 669
R++RE+ +GK
Sbjct: 61 DRLKREFKVDANVGK 75
>d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 115
Score = 95.1 bits (236), Expect = 8e-24
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 674 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLP 733
++ET+ + + +KKQ+GG GQYG V L ++ F G +P +
Sbjct: 2 YRETIKKVAEGQGKYKKQTGGHGQYGDVW-----LRLEPASEYGFEWRITGGVIPSKYQE 56
Query: 734 AIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 789
AI +G K+ +KG L+G V G + ++ +G H VDS++++F +AA A K+ E
Sbjct: 57 AIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAE 112
Score = 48.5 bits (115), Expect = 2e-07
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 878 HGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEE 930
G K+ +KG L+G V G + ++ +G H VDS++++F +AA A K+ E
Sbjct: 60 EGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAE 112
Score = 45.8 bits (108), Expect = 1e-06
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 835 TIYAEMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA-HGFKQMCEK 886
E +KG L+G V G + ++ +G H VDS++++F +AA FK++ +
Sbjct: 60 EGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAE 112
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 91.3 bits (226), Expect = 2e-22
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 486 EDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRV 544
E + V ++P +G P ALAFK+ A + G+LT++R Y G L G +YN +K RV
Sbjct: 13 EGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERV 70
Query: 545 SRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESI 593
+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI
Sbjct: 71 ARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESI 120
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 91.5 bits (226), Expect = 5e-21
Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 30/226 (13%)
Query: 185 ISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDN------- 237
+ E L + E++ NI H+D+GK+TL ILF TG + + + +
Sbjct: 11 VDQELLKDMYGKEHV-NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKE 69
Query: 238 ---VGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGA 294
+ +DS ER++G T++ Y + +++D PGH + + D
Sbjct: 70 SWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIG 129
Query: 295 ILVLCAVGGVQSQTLTVNRQMKRYDV--------PCIAFINKLDRLGADP--------YR 338
+LV+ A G Q + + V + INK+D
Sbjct: 130 VLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVD 189
Query: 339 VINQMRQKVGHNAAFLQIPIGLGSETKG--IIDLIQRKAI-YFEGP 381
++ ++V + + S G + D + +++GP
Sbjct: 190 KLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGP 235
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 88.6 bits (218), Expect = 3e-20
Identities = 44/232 (18%), Positives = 76/232 (32%), Gaps = 16/232 (6%)
Query: 199 IRN--IGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ 256
IR+ + + H+D GKTTL + I E + + +
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHI---GATEIPMDVIEGICGDF 59
Query: 257 SAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 316
+ IDTPGH FT +R + D AIL++ G + QT ++
Sbjct: 60 LKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILR 119
Query: 317 RYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE---TKGIIDLIQR 373
Y P + NK+DR+ + +Q + K + +
Sbjct: 120 MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFES 179
Query: 374 KAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEK 425
+ + I I A + E EL+ + L + +L E+
Sbjct: 180 ERFDRVTDFASQVSIIPISA-ITGE---GIPELLTMLMG----LAQQYLREQ 223
Score = 45.8 bits (107), Expect = 8e-06
Identities = 24/136 (17%), Positives = 42/136 (30%)
Query: 13 EQVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR 72
+ G + + + IDTPGH FT +R
Sbjct: 33 REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGA 92
Query: 73 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSR 132
+ D AIL++ G + QT ++ Y P + NK+DR+ + S+
Sbjct: 93 LADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152
Query: 133 WISNESLSEHKPIEYI 148
+ +
Sbjct: 153 QDIQVQQKLDTKVYEL 168
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 117
Score = 84.3 bits (208), Expect = 6e-20
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 937 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYAEIPLNDMFGFAGDLR 994
EP+ VEI P + G + +++ K+ G + E + T+ A +P+N+ FGF G+LR
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELR 60
Query: 995 SSTQGKGEFSMDYSRYSPALPEVQDRLVNEYQEATNPQAAATQKKKK 1041
+T G+ M + +S + D + A +K+
Sbjct: 61 QATGGQAFPQMVFDHWSTLGSDPLDPTSKAGE-----IVLAARKRHG 102
Score = 44.6 bits (105), Expect = 5e-06
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 796 EPIMSVEISTPIEFQGSVLNLVTKRHGILQGNEGKDD--WVTIYAEM 840
EP+ VEI P + G + +++ K+ G + E + T+ A +
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYL 47
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 77
Score = 78.8 bits (194), Expect = 1e-18
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 595 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYA 654
+ DP V +++ D +A+++ +EDP+ E+ E L+ G GELHL
Sbjct: 1 LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAK 60
Query: 655 QRMEREYNCPVVLGKPKV 672
+R+ ++Y V PKV
Sbjct: 61 ERL-QDYGVEVEFSVPKV 77
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 79
Score = 76.1 bits (187), Expect = 1e-17
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 594 YVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIY 653
+ PVV ++++ N D + ++R +K DP + ES E +V+G GELHLEI
Sbjct: 2 FSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEIC 60
Query: 654 AQRMEREY-NCPVVLGKP 670
Q +E ++ P+ + P
Sbjct: 61 LQDLEHDHAGVPLKISPP 78
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 75.8 bits (185), Expect = 5e-16
Identities = 38/191 (19%), Positives = 58/191 (30%), Gaps = 24/191 (12%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA-- 258
NIG+ H+D GKTTL + I R G + E G+
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKR-----GMTIKLGYAETNIGVCESCKKP 64
Query: 259 -------------ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 305
+ I+ ID PGH + ++DGAILV+ A
Sbjct: 65 EAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP 124
Query: 306 SQTLTVNRQ--MKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSE 363
+ I NK+D + + + ++ +PI S
Sbjct: 125 QPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 184
Query: 364 TKG--IIDLIQ 372
I LI+
Sbjct: 185 LHKINIDSLIE 195
Score = 36.9 bits (84), Expect = 0.006
Identities = 22/141 (15%), Positives = 39/141 (27%), Gaps = 17/141 (12%)
Query: 6 KIIHIKQEQVRGKDNVGAVMDSMELERQRGITIQSA---------------ATYTLWKDH 50
I I + + G + E G+ +
Sbjct: 27 AITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR 86
Query: 51 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ--MKRYDVPCIAF 108
I+ ID PGH + ++DGAILV+ A + I
Sbjct: 87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIV 146
Query: 109 INKLDRLGADPYRVINQMRQK 129
NK+D + + + ++
Sbjct: 147 QNKVDVVSKEEALSQYRQIKQ 167
Score = 29.9 bits (66), Expect = 1.1
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 446 TPVLVGTALKNKGVQTLLDAVLDYLPNP 473
P++ +AL + +L++ + +Y+ P
Sbjct: 177 VPIIPVSALHKINIDSLIEGIEEYIKTP 204
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 67.0 bits (163), Expect = 5e-14
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 494 PSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHS 552
R G P +A FK++ F GQ+ Y+R Y+G+L+ G+ + + ++ L
Sbjct: 2 TERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLP--HLYVPMG 59
Query: 553 NEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLE 591
++ +VEE AG + + G S E
Sbjct: 60 KDLLEVEEAEAGFVLGVPKAEGLHRGMVL-WQGEKPESEE 98
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 67.3 bits (163), Expect = 7e-13
Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 34/215 (15%)
Query: 151 IGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDS 210
+ SGKTTLT Y ++ N+
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVA-------------------YVNLDTGVKELP 43
Query: 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270
+ ++ R + E+ N V L + L K+++
Sbjct: 44 YEPSIDVREFV---TVEEIMREGYGPNGAIVESYDRLMEK--FNEYLNKILRLEKENDYV 98
Query: 271 IIDTPGHVDFTVEVERALRVLDG-----AILVLCAVGGVQSQT-----LTVNRQMKRYDV 320
+IDTPG ++ + E +R+++ + + + R
Sbjct: 99 LIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGA 158
Query: 321 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 355
I +NK+D L + + + + + A L+
Sbjct: 159 TTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLK 193
Score = 46.1 bits (108), Expect = 9e-06
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 10/105 (9%)
Query: 34 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDG-----AILVLCAVGGVQ 88
L K+++ +IDTPG ++ + E +R+++ + + +
Sbjct: 79 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKK 138
Query: 89 SQT-----LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 128
R I +NK+D L + + +
Sbjct: 139 PNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFE 183
>d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 63.2 bits (153), Expect = 5e-12
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 8/153 (5%)
Query: 636 ESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGS 695
ES +T +S H IY + + + + + ++ DF + +
Sbjct: 10 ESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRD------DFKARARIMADDY 63
Query: 696 GQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAG 755
G + P N ID+T +++ F+ ++G + G +
Sbjct: 64 GWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRS 123
Query: 756 VRMVLKDGDNHMVDSNEISF--ILAAHGAMKQA 786
VR+ + D H + I A
Sbjct: 124 VRVNILDVTLHADAIHRGGGQIIPTMRRATYAG 156
Score = 40.1 bits (93), Expect = 4e-04
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 857 VLKDGDNHMVDSNEISFILAAHGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISF 916
++ D + +EI F+ ++G + G + VR+ + D H +
Sbjct: 85 LVIDQTKAVQYLHEIKD-SVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGG 143
Query: 917 --ILAAHGAMKQA 927
I A
Sbjct: 144 QIIPTMRRATYAG 156
Score = 35.5 bits (81), Expect = 0.011
Identities = 19/152 (12%), Positives = 48/152 (31%), Gaps = 11/152 (7%)
Query: 747 CLSGS-----RVAGVRMVLKDGDNHMVDSNEISFILAAHGAMKQAYEEGVWQILEPIMSV 801
LS S R+ + + + +++ I+ + ++ W + +
Sbjct: 15 ALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIW 74
Query: 802 EISTPIEFQGSVLNLVTKRHGILQGNEGKDDWVTIYAEMCEKGCLSGSRVAGVRMVLKDG 861
++ + + +E KD V + ++G + G + VR+ + D
Sbjct: 75 CFGPDGNG---PNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDV 131
Query: 862 DNHMVDSNEISF-ILAAHGFKQMCEKGCLSGS 892
H + I+ ++ G L
Sbjct: 132 TLHADAIHRGGGQIIPT--MRRATYAGFLLAD 161
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 63.5 bits (153), Expect = 7e-12
Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 9/181 (4%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGA-----VMDSMELERQRGITI 255
NIG+ H+D GKTTLT+ + RG + R +
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 66
Query: 256 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM 315
+ ++ ID PGH + ++DGAILV+ A +
Sbjct: 67 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 126
Query: 316 KR--YDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKG--IIDLI 371
+ I NK++ + + + ++ PI S G I L+
Sbjct: 127 LQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLV 186
Query: 372 Q 372
+
Sbjct: 187 K 187
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 3/123 (2%)
Query: 150 NIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHID 209
NIG+ H+D GKTTLT+ + E R I+ + E R +
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDT-HSEELRRGITIK--IGFADAEIRRCPNCGRYST 63
Query: 210 SGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNI 269
S + R+S + + + ++ L + I + +
Sbjct: 64 SPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREH 123
Query: 270 NII 272
+
Sbjct: 124 LMA 126
Score = 28.4 bits (62), Expect = 3.6
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 446 TPVLVGTALKNKGVQTLLDAVLDYLP 471
P++ +AL + L+ A+ D++P
Sbjct: 169 APIIPISALHGANIDVLVKAIEDFIP 194
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 58.9 bits (142), Expect = 7e-11
Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 473 PGEVTNYAIEN----GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ--LTYMRCYQGK 526
P Y E +D + + D K + K+ + R + G
Sbjct: 2 PVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGT 61
Query: 527 LRKGEMIYNVRTDKKVR---------VSRLVRLHSNEMEDVEEVLAGDIFALFGVD--CA 575
++ G+ + + + R+V + +E +++ AG+I L G+D
Sbjct: 62 VKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLL 121
Query: 576 SGDTFVTDKNNSISLES 592
T +T + +++
Sbjct: 122 KTGT-LTTSETAHNMKV 137
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 59.7 bits (143), Expect = 1e-10
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 19/176 (10%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+GI HID GKTTL++ + + D + ++RGITI +
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIAS--------------TSAHDKLPESQKRGITIDIGFS 52
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
+++ I ++D PGH D V A ++D A++V+ A G ++QT + +++
Sbjct: 53 AFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNI 112
Query: 321 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ----IPIGLGSETKGIIDLIQ 372
P I I K D G + + + + + + L+ IPI G+ +L
Sbjct: 113 PIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS-AKTGFGVDELKN 167
Score = 43.2 bits (100), Expect = 4e-05
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 150 NIGISAHIDSGKTTLTERILFYTGRISE 177
N+GI HID GKTTL++ + +
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIASTSAH 34
Score = 29.3 bits (64), Expect = 1.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 430 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 473
+ I K+I +ST K + ++ +A GV L + ++ L N
Sbjct: 133 EMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA 176
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 49.2 bits (116), Expect = 6e-07
Identities = 27/220 (12%), Positives = 63/220 (28%), Gaps = 32/220 (14%)
Query: 202 IGISAHIDSGKTTLTERILF-----YTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQ 256
I I+ +SGKT+L + + + ++D + R
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 257 SAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 316
T + I ++D+ L L++
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLV-----------------DILSITESSC 108
Query: 317 RYDVPCIAFINKLDRLGADPYRVI--------NQMRQKVGHNAAFLQIPIGLGSETKGII 368
+ + NK + A P I ++ ++ + ++ I + +
Sbjct: 109 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 168
Query: 369 DLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIE 408
D++Q + L + + + K S+ +E I+
Sbjct: 169 DVLQSTDGFKFANLEAS--VVAFEGSINKRKISQWREWID 206
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 40.4 bits (93), Expect = 5e-04
Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 29/228 (12%)
Query: 200 RNIGISAHIDSGKTTLTERILF------YTGRISEMHEVRGKDNVGAVMDSMELERQRGI 253
R + DSGKT L R+L T + +N G + ++L +
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 254 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 313
Q + + ++D+ +V L + ++
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFL------------------YQVLIDS 102
Query: 314 QMKRYDVPCIAFINKLDRLGADPYRVI-NQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQ 372
+ + NK D A ++I Q+ +++ + +
Sbjct: 103 MALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLG 162
Query: 373 RKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEM 420
+K FE L++E + K I+ + ++ L ++
Sbjct: 163 KKGKEFEFSQLP-LKVEFLECSAKGGRGDTGSADIQDL---EKWLAKI 206
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 38.2 bits (88), Expect = 0.005
Identities = 14/135 (10%), Positives = 36/135 (26%), Gaps = 20/135 (14%)
Query: 201 NIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAAT 260
N+ ++ SGK++ + + ++ A +E
Sbjct: 58 NVAVTGETGSGKSSFINTLRG----------IGNEEEGAAKTGVVE-------VTMERHP 100
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALR---VLDGAILVLCAVGGVQSQTLTVNRQMKR 317
Y N+ D PG + L + ++ + + + + + +
Sbjct: 101 YKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM 160
Query: 318 YDVPCIAFINKLDRL 332
K+D
Sbjct: 161 MKKEFYFVRTKVDSD 175
Score = 38.2 bits (88), Expect = 0.005
Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 17/146 (11%)
Query: 37 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR---VLDGAILVLCAVGGVQSQTLT 93
Y N+ D PG + L + ++ + + +
Sbjct: 94 VTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDID 153
Query: 94 VNRQMKRYDVPCIAFINKLDRLGA----------DPYRVINQMRQKTSRWISNESLSEHK 143
+ + + K+D D +V+ +R ++E
Sbjct: 154 IAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE-P 212
Query: 144 PIEYIRNIGISAHIDSGKTTLTERIL 169
PI + N + + L ++++
Sbjct: 213 PIFLLSNKNVCHY---DFPVLMDKLI 235
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 34.9 bits (79), Expect = 0.024
Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 19/116 (16%)
Query: 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270
GK+ L + F + + G+ + ++ K +
Sbjct: 17 GKSCLLHQ--FIEKKFKDDSNHTIGVEFGSKIINVG-----------------GKYVKLQ 57
Query: 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFI 326
I DT G F R GA+LV LT R I
Sbjct: 58 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 113
Score = 32.6 bits (73), Expect = 0.15
Identities = 22/127 (17%), Positives = 33/127 (25%), Gaps = 14/127 (11%)
Query: 47 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 106
K + I DT G F R GA+LV LT R
Sbjct: 51 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN 110
Query: 107 AFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA----HIDSGKT 162
I N+ R ++ S + + SA +++
Sbjct: 111 IVI----------ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 160
Query: 163 TLTERIL 169
+IL
Sbjct: 161 QCARKIL 167
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 33.6 bits (76), Expect = 0.052
Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 15/139 (10%)
Query: 35 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 94
GI + K + I DT G F R G ILV +
Sbjct: 36 GIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYD-----------I 84
Query: 95 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGIS 154
+ ++ ++ +R ++ + I I S
Sbjct: 85 TDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESS 144
Query: 155 A----HIDSGKTTLTERIL 169
A +++ TL + I
Sbjct: 145 AKNDDNVNEIFFTLAKLIQ 163
Score = 32.4 bits (73), Expect = 0.14
Identities = 20/128 (15%), Positives = 29/128 (22%), Gaps = 19/128 (14%)
Query: 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270
GK+ L R F + + GI + K +
Sbjct: 14 GKSCLLVR--FVEDKFNPSFI-----------------TTIGIDFKIKTVDINGKKVKLQ 54
Query: 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 330
I DT G F R G ILV + + A + +
Sbjct: 55 IWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG 114
Query: 331 RLGADPYR 338
R
Sbjct: 115 NKSDMETR 122
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 33.6 bits (75), Expect = 0.10
Identities = 29/272 (10%), Positives = 75/272 (27%), Gaps = 25/272 (9%)
Query: 173 GRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDSGKTTLTERILFYTGRISEMHEV 232
R ++ + + N P + + +GKT ++ + V
Sbjct: 20 HREQQLQQLDILLGN---WLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFV 76
Query: 233 RGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLD 292
+ ++ E R + I + +++ D VLD
Sbjct: 77 YINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD-----LYMFLVLD 131
Query: 293 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAA 352
A + + + ++ + + + + L M + V
Sbjct: 132 DAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIR--- 188
Query: 353 FLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRI------EEIPADLKKEAESKRQEL 406
+ I+ + + D L++ + P D + ++
Sbjct: 189 ---FSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 245
Query: 407 IEHVAEGDEILGEMFLEEKSISEDDIKKAIRR 438
+ A + G K I+ +D++K+ +
Sbjct: 246 LYRSAYAAQQNGR-----KHIAPEDVRKSSKE 272
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 32.5 bits (73), Expect = 0.16
Identities = 23/150 (15%), Positives = 34/150 (22%), Gaps = 23/150 (15%)
Query: 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270
GKT L R F G G+ + +
Sbjct: 17 GKTCLVRR--FTQGLFPPGQG-----------------ATIGVDFMIKTVEINGEKVKLQ 57
Query: 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAVGG----VQSQTLTVNRQMKRYDVPCIAFI 326
I DT G F + R + IL + L Q V +
Sbjct: 58 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 117
Query: 327 NKLDRLGADPYRVINQMRQKVGHNAAFLQI 356
NK+D + +L+
Sbjct: 118 NKIDLAERREVSQQRAEEFSEAQDMYYLET 147
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 32.0 bits (72), Expect = 0.18
Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 14/126 (11%)
Query: 48 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIA 107
K + I DT G F R G +LV N + I
Sbjct: 53 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDI----------TNEKSFDNIRNWIR 102
Query: 108 FINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA----HIDSGKTT 163
I + + + N+ R +S E + I+ + SA ++++ T
Sbjct: 103 NIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 162
Query: 164 LTERIL 169
L I
Sbjct: 163 LARDIK 168
Score = 30.9 bits (69), Expect = 0.48
Identities = 23/151 (15%), Positives = 37/151 (24%), Gaps = 23/151 (15%)
Query: 210 SGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNI 269
GKT + R F + +G +E K +
Sbjct: 17 VGKTCVLFR--FSEDAFNSTF----ISTIGIDFKIRTIELDG-------------KRIKL 57
Query: 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG----VQSQTLTVNRQMKRYDVPCIAF 325
I DT G F R G +LV + + DV +
Sbjct: 58 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL 117
Query: 326 INKLDRLGADPYRVINQMRQKVGHNAAFLQI 356
NK D + + + F++
Sbjct: 118 GNKCDVNDKRQVSKERGEKLALDYGIKFMET 148
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 32.0 bits (71), Expect = 0.21
Identities = 8/55 (14%), Positives = 25/55 (45%)
Query: 420 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPG 474
+ + K+ + + ++ ++ + F + +A N + T+L+ ++ L G
Sbjct: 113 ILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG 167
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 31.4 bits (70), Expect = 0.29
Identities = 21/151 (13%), Positives = 33/151 (21%), Gaps = 23/151 (15%)
Query: 210 SGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNI 269
GKT+ R + + GI + Y K +
Sbjct: 16 VGKTSFLFR--YADDSFTPAFV-----------------STVGIDFKVKTIYRNDKRIKL 56
Query: 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFI--- 326
I DT G + R G IL+ + + A +
Sbjct: 57 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 116
Query: 327 -NKLDRLGADPYRVINQMRQKVGHNAAFLQI 356
NK D + F +
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGFEFFEA 147
Score = 29.1 bits (64), Expect = 1.9
Identities = 22/141 (15%), Positives = 37/141 (26%), Gaps = 14/141 (9%)
Query: 33 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL 92
GI + Y K + I DT G + R G IL+ +
Sbjct: 37 TVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV 96
Query: 93 TVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIG 152
+ A + V N+ + R +S+E +
Sbjct: 97 QDWSTQIKTYSWDNAQV----------LLVGNKCDMEDERVVSSERGRQLADHLGFEFFE 146
Query: 153 ISA----HIDSGKTTLTERIL 169
SA ++ L + I
Sbjct: 147 ASAKDNINVKQTFERLVDVIC 167
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 31.7 bits (71), Expect = 0.42
Identities = 14/96 (14%), Positives = 35/96 (36%)
Query: 253 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN 312
+ + + + ++DTPG + E E L + ++ +Q +
Sbjct: 143 RPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGL 202
Query: 313 RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 348
R ++ + + LD + D + + + +K G
Sbjct: 203 RFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRG 238
Score = 30.6 bits (68), Expect = 0.78
Identities = 17/113 (15%), Positives = 41/113 (36%)
Query: 36 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN 95
+ + + + ++DTPG + E E L + ++ +Q +
Sbjct: 143 RPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGL 202
Query: 96 RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYI 148
R ++ + + LD + D + + + +K +S ++ K E I
Sbjct: 203 RFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKTTEVI 255
>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 70
Score = 29.0 bits (65), Expect = 0.48
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 396 KKEAESKRQELIEHVAEGDEILGEMFLEE-KSISEDDIKKAIRRSTLTRKF 445
+E + Q L E+ GD +L E+ L++ + + + D+ KAI+ L K
Sbjct: 18 VEETDPLCQRLRENDIVGD-LLPELCLQDCQDLCDGDLNKAIKFKILINKM 67
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 30.1 bits (66), Expect = 1.1
Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 4/175 (2%)
Query: 202 IGISAHIDSGKTTLTERILFYTGRISEMHEV-RGKDNVGAVMDSMELERQRGITIQSAAT 260
I + + GK+TL R+ R + V R + + G +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 261 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 320
I + V V I+ G + + ++ D+
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 321 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETK--GIIDLIQR 373
P I +NKLD++ + VIN + +K + + S I L R
Sbjct: 123 PTIVAVNKLDKI-KNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNR 176
Score = 27.0 bits (58), Expect = 8.9
Identities = 2/50 (4%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 422 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 471
++ + + + + + +A ++ L + + + +
Sbjct: 134 IKNVQEVINFLAEKFEVPLSEIDKVFIPI-SAKFGDNIERLKNRIFEVIR 182
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 29.7 bits (65), Expect = 1.1
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 428 SEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 471
+ ++A++ + +AL + V L +L +P
Sbjct: 127 AAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 170
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 29.4 bits (65), Expect = 1.5
Identities = 19/127 (14%), Positives = 31/127 (24%), Gaps = 14/127 (11%)
Query: 47 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 106
+ I DT G F R G ILV R +
Sbjct: 53 GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDV----------TRRDTFVKLDNWL 102
Query: 107 AFINKLDRLGADPYRVINQMRQKTSRWISNESLSEHKPIEYIRNIGISA----HIDSGKT 162
+ ++ K +R + + + I SA +
Sbjct: 103 NELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE 162
Query: 163 TLTERIL 169
L E+I+
Sbjct: 163 ELVEKII 169
Score = 28.3 bits (62), Expect = 3.6
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 19/87 (21%)
Query: 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270
GK++L R + + + I++ +
Sbjct: 19 GKSSLLLRF------------TDDTFDPELAATIGVDFKVKTISVD-------GNKAKLA 59
Query: 271 IIDTPGHVDFTVEVERALRVLDGAILV 297
I DT G F R G ILV
Sbjct: 60 IWDTAGQERFRTLTPSYYRGAQGVILV 86
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.4 bits (65), Expect = 1.6
Identities = 25/168 (14%), Positives = 40/168 (23%), Gaps = 23/168 (13%)
Query: 211 GKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNIN 270
GK+ L R F + + +G +E K +
Sbjct: 18 GKSCLLLR--FSDDTYTNDYI----STIGVDFKIKTVELD-------------GKTVKLQ 58
Query: 271 IIDTPGHVDFTVEVERALRVLDGAILVLCAV----GGVQSQTLTVNRQMKRYDVPCIAFI 326
I DT G F R G I+V L + V +
Sbjct: 59 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 118
Query: 327 NKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRK 374
NK D + FL+ + + + R+
Sbjct: 119 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 166
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 28.7 bits (63), Expect = 2.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 151 IGISAHIDSGKTTLTERIL 169
+ + SGKTTL E+ +
Sbjct: 4 WQVVGYKHSGKTTLMEKWV 22
Score = 28.7 bits (63), Expect = 2.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 202 IGISAHIDSGKTTLTERIL 220
+ + SGKTTL E+ +
Sbjct: 4 WQVVGYKHSGKTTLMEKWV 22
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 28.7 bits (63), Expect = 2.4
Identities = 12/60 (20%), Positives = 22/60 (36%)
Query: 420 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY 479
+ + K + + PV +A+ +G++ LL V + L N E Y
Sbjct: 121 IIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPLY 180
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.8 bits (63), Expect = 2.5
Identities = 25/200 (12%), Positives = 57/200 (28%), Gaps = 18/200 (9%)
Query: 149 RNIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHI 208
R++ ++ GKTTL + + E + R IG
Sbjct: 2 RHVFLTGPPGVGKTTLIHKAS---EVLKSSGVPVDGFYTEE-----VRQGGRRIGFDVVT 53
Query: 209 DSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHN 268
SG R+ V + + L R S +
Sbjct: 54 LSGTRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVC---- 109
Query: 269 INIIDTPGHVDFTVEVERAL--RVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDVPCIAF 325
+ID G ++ ++ + L ++ V + + L + +++ +
Sbjct: 110 --VIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFN 167
Query: 326 INKLDRLGADPYRVINQMRQ 345
+ K +R ++ ++
Sbjct: 168 VTKENR-NHLLPDIVTCVQS 186
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.9 bits (63), Expect = 2.6
Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 8/136 (5%)
Query: 150 NIGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHID 209
+ I + GK+TL IL + + + +Y+
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF------VDT 63
Query: 210 SGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNI 269
+G + + S V + V+ + L+ +GIT Q L +
Sbjct: 64 AGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVV--IVLDATQGITRQDQRMAGLMERRGR 121
Query: 270 NIIDTPGHVDFTVEVE 285
+ D V E
Sbjct: 122 ASVVVFNKWDLVVHRE 137
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.4 bits (62), Expect = 3.7
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 151 IGISAHIDSGKTTLTERIL 169
IG+S SGK+++ +I+
Sbjct: 5 IGVSGGTASGKSSVCAKIV 23
Score = 28.4 bits (62), Expect = 3.7
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 202 IGISAHIDSGKTTLTERIL 220
IG+S SGK+++ +I+
Sbjct: 5 IGVSGGTASGKSSVCAKIV 23
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 28.7 bits (63), Expect = 3.9
Identities = 33/268 (12%), Positives = 69/268 (25%), Gaps = 37/268 (13%)
Query: 202 IGISAHIDSGKTTLTERILFY---------TGRISEMHEVRGKDNVGAVMDSMELERQRG 252
+GI+ GK+T + + + G +G L R
Sbjct: 54 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 113
Query: 253 I------TIQSAATYTLWKDHNINIIDTPGHVDFTVE-VERAL---RVLDGAILVLCAVG 302
+ + + + + G VE V V D L +
Sbjct: 114 AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLML 173
Query: 303 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-----DPYRVINQMRQKVGHNAAFLQIP 357
L + +++ + +NK D + +A P
Sbjct: 174 PGAGDELQGIK-KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPP 232
Query: 358 IGLGSETKG-IIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEI 416
+ S G +D + + L I K E + + V E
Sbjct: 233 VVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAG------KRREQDVKWMWALV---HER 283
Query: 417 LGEMFLEEKSISE--DDIKKAIRRSTLT 442
L + + + + + ++A+ +
Sbjct: 284 LHQRLVGSAEVRQATAEAERAVAGGEHS 311
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 28.1 bits (61), Expect = 3.9
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 444 KFTPVLVGTALKNKGVQTLLDAVLDYLP 471
F ++ +A V T+ V +LP
Sbjct: 144 NFLDIVPISAETGLNVDTIAAIVRKHLP 171
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 28.2 bits (61), Expect = 4.3
Identities = 10/80 (12%), Positives = 21/80 (26%)
Query: 151 IGISAHIDSGKTTLTERILFYTGRISEMHETSRWISNESLSEHKPIEYIRNIGISAHIDS 210
+GI SGKTTL ++ + + ++
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84
Query: 211 GKTTLTERILFYTGRISEMH 230
LT ++ ++
Sbjct: 85 DVEWLTHQLFRQLKASHQLT 104
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.9 bits (61), Expect = 4.5
Identities = 24/151 (15%), Positives = 40/151 (26%), Gaps = 23/151 (15%)
Query: 210 SGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNI 269
GK+ L R F + K +G + ++ K
Sbjct: 15 VGKSNLLSR--FTRNEFNLES----KSTIGVEFATRSIQVDG-------------KTIKA 55
Query: 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAV----GGVQSQTLTVNRQMKRYDVPCIAF 325
I DT G + R GA+LV + L R ++ +
Sbjct: 56 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 115
Query: 326 INKLDRLGADPYRVINQMRQKVGHNAAFLQI 356
NK D +N +F++
Sbjct: 116 GNKSDLRHLRAVPTDEARAFAEKNNLSFIET 146
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 28.2 bits (62), Expect = 4.7
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 384 DNLRIEEIPADLKKEAESKRQELIEHVAEGD-------EILGEMFLE--EKSISEDDIKK 434
D +R+E +P K KR + + + + + + F++ ++ + D++
Sbjct: 9 DLMRLESVPTPPKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQRFLKPQDMET 68
Query: 435 AIRRSTLTRKFTPVLVGT---ALKNKGVQTLLDAVLDYLP 471
+ AL G TL + Y
Sbjct: 69 IFVNIEELFSVHTHFLKELKDALAGPGATTLYQVFIKYKE 108
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 26.7 bits (59), Expect = 4.9
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 521 RCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI--FALFGV--DCAS 576
+ G ++K + + ++ + V ++ E++ + GD + G D +
Sbjct: 28 KIEAGSIKKNSNVLVMPINQTLEV---TAIYDEADEEISSSICGDQVRLRVRGDDSDVQT 84
Query: 577 GDTFVTDKN 585
G + KN
Sbjct: 85 GYVLTSTKN 93
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.5 bits (60), Expect = 6.1
Identities = 20/149 (13%), Positives = 37/149 (24%), Gaps = 9/149 (6%)
Query: 210 SGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSAATYTLWKDHNI 269
GKTT R + + + + + G + + ++
Sbjct: 16 VGKTTFLYR--YTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK-------AFKVHL 66
Query: 270 NIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKL 329
+ DT G F R G +L+ + + + C L
Sbjct: 67 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126
Query: 330 DRLGADPYRVINQMRQKVGHNAAFLQIPI 358
AD ++ A IP
Sbjct: 127 IGNKADLPDQREVNERQARELADKYGIPY 155
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 27.6 bits (60), Expect = 6.2
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 148 IRNIGISAHIDSGKTTLTERIL 169
I + +A +GKTTL ++++
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLI 23
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 27.4 bits (59), Expect = 7.4
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 430 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYL 470
D K +R++ +++ ++ KG A+ +
Sbjct: 153 DKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 27.3 bits (59), Expect = 7.8
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 20/91 (21%)
Query: 199 IRNIGISAHIDSGKTTLTERILFYTGRISEMHEVRGKDNVGAVMDSMELERQRGITIQSA 258
I ++G+ + ++GK++L + +I+ N+G
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG------------------- 41
Query: 259 ATYTLWKDHNINIIDTPGHVDFTVEVERALR 289
+ ++ + D PG ++ E +
Sbjct: 42 -VVEVSEEERFTLADIPGIIEGASEGKGLGL 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,879,471
Number of extensions: 187860
Number of successful extensions: 732
Number of sequences better than 10.0: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 116
Length of query: 1043
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 948
Effective length of database: 1,103,246
Effective search space: 1045877208
Effective search space used: 1045877208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.8 bits)