BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11897
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 95 DLLRAEVRTGNTRGRNIEAIMKQG-------GLVPDVSYLSSNNPYFGSTVGRVANRIAG 147
DLLR ++ + +E +QG G YL PYFG+ +GRVANRIA
Sbjct: 29 DLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQ-KQPYFGAVIGRVANRIAK 87
Query: 148 GKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVI 207
G F +D + + ++ N + N LHGG +GFDKV+W+ V + V S +SPDG+EGYPG +
Sbjct: 88 GTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNGVQFSRISPDGEEGYPGELK 147
Query: 208 ATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLAG 246
T+ L L + A +++ TP+NLTNHSYFNLAG
Sbjct: 148 VWVTYTL-DGGELIVNYRAQASQATPVNLTNHSYFNLAG 185
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKR 327
FLIDG+PR DQA F +D E IL+ D P+D++L RL++RG TSGR DD ++IKKR
Sbjct: 99 FLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKR 158
Query: 328 LIKANENDGPILQAF--KSHIAKV 349
E P+++ F KS + +V
Sbjct: 159 FNTFKETSMPVIEYFETKSKVVRV 182
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 42 STKPSLGFDPSQTGIPLQVEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEV 101
+T F P Q + + G PG GK TQ + ++ + +H+S GDLLRAE
Sbjct: 3 ATTSQPAFSPDQVSVIFVL-------GGPGAGKGTQCEKLVKDYS-FVHLSAGDLLRAEQ 54
Query: 102 -RTGNTRGRNIEAIMKQGGLVP 122
R G+ G I+ +K+G +VP
Sbjct: 55 GRAGSQYGELIKNCIKEGQIVP 76
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARL 307
+ V ++L M+ ++ +K FLIDGYPR+ Q ++F + +P ++LY+DA + + RL
Sbjct: 71 ETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRL 130
Query: 308 VKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVN 350
+KRG TSGR DD E+ IKKRL + P++ ++ + KVN
Sbjct: 131 LKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVN 175
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVP 122
G PG+GK TQ + I+ K+ H+STGDLLR+EV +G+ RG+ + IM++G LVP
Sbjct: 16 GGPGSGKGTQCEKIVQKYG-YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVP 69
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARL 307
+ V ++L M+ ++ +K FLIDGYPR+ Q ++F + +P ++LY+DA + + RL
Sbjct: 71 ETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRL 130
Query: 308 VKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVN 350
+KRG TSGR DD E+ IKKRL + P++ ++ + KVN
Sbjct: 131 LKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVN 175
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVP 122
G PG+GK TQ + I+ K+ H+STGDLLRAEV +G+ RG+ + IM++G LVP
Sbjct: 16 GGPGSGKGTQCEKIVQKYG-YTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVP 69
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
Length = 338
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 133 YFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIW----STYVDKDK 188
+ G TVGR+A R+ G++ E + N NH+HGG G D +W S + +
Sbjct: 66 FLGGTVGRIAGRVRAGQWKHGNEIHQLPLNDGDNHIHGGI-GTDMHVWDFRPSCDSEHAR 124
Query: 189 VVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLA 245
V ++ PDG+ YPG + ++L ++N L +EAVS K T N NH+YFNL
Sbjct: 125 VDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAVSDKLTIFNPVNHTYFNLG 181
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS4|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
pdb|1NS4|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
Length = 347
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 131 NPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKD--- 187
+ Y G+TVG A RI G I +++ ++QN LHGG + +W TY D
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLW-TYEVTDLGA 116
Query: 188 --KVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLA 245
+V S +S DG GYPG + + T DN+ I EA+S K T N T H YFNL
Sbjct: 117 EVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLN 176
Query: 246 G 246
G
Sbjct: 177 G 177
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
Length = 347
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 131 NPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKD--- 187
+ Y G+TVG A RI G I +++ ++QN LHGG + +W TY D
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLW-TYEVTDLGA 116
Query: 188 --KVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLA 245
+V S +S DG GYPG + + T DN+ I EA+S K T N T H YFNL
Sbjct: 117 EVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLN 176
Query: 246 G 246
G
Sbjct: 177 G 177
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSM|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSS|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
pdb|1NSS|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
Length = 347
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 131 NPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKD--- 187
+ Y G+TVG A RI G I +++ ++QN LHGG + +W TY D
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLW-TYEVTDLGA 116
Query: 188 --KVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLA 245
+V S +S DG GYPG + + T DN+ I EA+S K T N T H YFNL
Sbjct: 117 EVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLN 176
Query: 246 G 246
G
Sbjct: 177 G 177
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS2|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS7|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
pdb|1NS7|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
Length = 347
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 131 NPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKD--- 187
+ Y G+TVG A RI G I +++ ++QN LHGG + +W TY D
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLW-TYEVTDLGA 116
Query: 188 --KVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLA 245
+V S +S DG GYPG + + T DN+ I EA+S K T N T H YFNL
Sbjct: 117 EVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLN 176
Query: 246 G 246
G
Sbjct: 177 G 177
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NS8|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NSR|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
pdb|1NSR|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
Length = 347
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 131 NPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKD--- 187
+ Y G+TVG A RI G I +++ ++QN LHGG + +W TY D
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLW-TYEVTDLGA 116
Query: 188 --KVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLA 245
+V S +S DG GYPG + + T DN+ I EA+S K T N T H YFNL
Sbjct: 117 EVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLN 176
Query: 246 G 246
G
Sbjct: 177 G 177
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
pdb|1LUR|B Chain B, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
Length = 339
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 135 GSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDK-DKVVMSH 193
G TVGRVANRI D + +T + N ++LHGG G W + V S
Sbjct: 67 GKTVGRVANRIKNSTLHFDGKQYTXTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSV 126
Query: 194 MSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLAGHDIVREV 253
+ + D+G PG T+ + N+L I A P + LTNH+Y+NL G D V E
Sbjct: 127 RANEQDDGLPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDTVAEH 186
Query: 254 LYKKMLQELAK 264
+ E +
Sbjct: 187 FLEXEADEFVE 197
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSV|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
pdb|1NSV|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
Length = 347
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 131 NPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKD--- 187
+ Y G+TVG A RI G I +++ ++QN L+GG + +W TY D
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLNGGEESIHTKLW-TYEVTDLGA 116
Query: 188 --KVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLA 245
+V S +S DG GYPG + + T DN+ I EA+S K T N T H YFNL
Sbjct: 117 EVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLN 176
Query: 246 G 246
G
Sbjct: 177 G 177
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
pdb|1NSZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
Length = 347
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 131 NPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKD--- 187
+ Y G+TVG A RI G I +++ ++QN LHGG + +W TY D
Sbjct: 58 DAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLW-TYEVTDLGA 116
Query: 188 --KVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLA 245
+V S +S DG GYPG + + T DN+ I EA+S K T N T + YFNL
Sbjct: 117 EVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGNVYFNLN 176
Query: 246 G 246
G
Sbjct: 177 G 177
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARL 307
++V +L + M++ + K FLIDGYPR+ DQ +F K+ ++ D ++V+ RL
Sbjct: 91 EVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRL 150
Query: 308 VKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH 345
+KR TS R DD E+ I KR NE P+++ +K
Sbjct: 151 LKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQ 188
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVP 122
G PG+GK TQ + ++ KF H+S+GDLLRAEV++G+ +G+ ++A+M++G LVP
Sbjct: 36 GGPGSGKGTQCEKLVQKF-HFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVP 89
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 126 YLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYV- 184
YL+ ++ Y G+T+GR ANRI+ GKF++ +++ ++ N VN H F + + +
Sbjct: 415 YLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPII 474
Query: 185 ---DKDKVVMSHMSPDG--DEGYPGAVIATTTFQL-TSDNRLFITMEAVST--KPTPINL 236
KD +M D D +PG ++ T + + + L I + T + TPINL
Sbjct: 475 QNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATPINL 534
Query: 237 TNHSYFNL 244
TNHSYFNL
Sbjct: 535 TNHSYFNL 542
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 243 NLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDV 302
+L IV E+L + M+ L + FLIDGYPR+ Q ++F + +P +++ +D D
Sbjct: 69 DLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADT 128
Query: 303 ILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAF--KSHIAKVN 350
+ RL++ +S DD I KRL P++ + K+ + K+N
Sbjct: 129 MTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKIN 178
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVP 122
G PG+GK TQ + ++ K+ H+STG+LLR E+ + + R + I IM++G LVP
Sbjct: 19 GGPGSGKGTQCEKLVEKYG-FTHLSTGELLREELASESERSKLIRDIMERGDLVP 72
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA+ I+ K+ E HISTGD+ RA ++ G G ++ M QG LVPD
Sbjct: 5 LMGLPGAGKGTQAEQIIEKY-EIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD 61
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 57 PLQVEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMK 116
PL+V I +G P +GK TQ + I +K+ A HIS GDLLRAE+ G+ G+ + M+
Sbjct: 5 PLKVMI----SGAPASGKGTQCELIKTKYQLA-HISAGDLLRAEIAAGSENGKRAKEFME 59
Query: 117 QGGLVPD 123
+G LVPD
Sbjct: 60 KGQLVPD 66
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 243 NLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDV 302
L +IV ++ +++ Q A+ +L+DGYPR QA P + LD PD++
Sbjct: 62 QLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDEL 121
Query: 303 ILARLVKRGL-----------------------TSGRPDDKEDAIKKRLIKANENDGPIL 339
++ R+V R L + R DD E+ +K RL +N +L
Sbjct: 122 LVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLL 181
Query: 340 QAFKSHIAKVN 350
+++ I KV
Sbjct: 182 STYENIIVKVQ 192
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 6/87 (6%)
Query: 248 DIVREVLYKKMLQELAKA---KLFLIDGYPRDKDQADQF---VKDTKEPAIILYLDAPDD 301
+IV ++ K+L+ A K FL+DG+PR+++ + + +KD + +L+ D P++
Sbjct: 63 EIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEE 122
Query: 302 VILARLVKRGLTSGRPDDKEDAIKKRL 328
V+ RL+KRG +SGR DD ++IKKR
Sbjct: 123 VMTQRLLKRGESSGRSDDNIESIKKRF 149
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDV 124
G PG+GK TQ NI+ F +H+S GDLLR E ++G+ G I ++K G +VP +
Sbjct: 13 GGPGSGKGTQCANIVRDFG-WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSI 68
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA N+ +F A H++TGD+LR+++ G G + IM QGGLV D
Sbjct: 9 LIGPPGAGKGTQAPNLQERF-HAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 35/133 (26%)
Query: 244 LAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP---AIILYLD 297
L DI+ ++ ++ A F++ G+PR QA DQ +K+ P AI L +D
Sbjct: 62 LVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD 121
Query: 298 APDDVILARLVKRGL--TSGRP-------------------------DDKEDAIKKRLIK 330
D++++AR+ R + SGR DD DA+KKRL
Sbjct: 122 --DELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAA 179
Query: 331 ANENDGPILQAFK 343
+ PI+ +K
Sbjct: 180 YHAQTEPIVDFYK 192
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA N+ +F A H++TGD+LR+++ G G + IM QGGLV D
Sbjct: 9 LIGPPGAGKGTQAPNLQERF-HAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 35/133 (26%)
Query: 244 LAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP---AIILYLD 297
L DI+ ++ ++ A F++DG+PR QA DQ +K+ P AI L +D
Sbjct: 62 LVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD 121
Query: 298 APDDVILARLVKRGL--TSG-------------------------RPDDKEDAIKKRLIK 330
D++++AR+ R + SG R DD DA+KKRL
Sbjct: 122 --DELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAA 179
Query: 331 ANENDGPILQAFK 343
+ PI+ +K
Sbjct: 180 YHAQTEPIVDFYK 192
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA N+ +F A H++TGD+LR+++ G G + IM QGGLV D
Sbjct: 9 LIGPPGAGKGTQAPNLQERF-HAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 35/133 (26%)
Query: 244 LAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP---AIILYLD 297
L DI+ ++ ++ A F++DG+PR QA DQ +K+ P AI L +D
Sbjct: 62 LVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD 121
Query: 298 APDDVILARLVKRGL--TSG-------------------------RPDDKEDAIKKRLIK 330
D++++AR+ R + SG R DD DA+KKRL
Sbjct: 122 --DELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAA 179
Query: 331 ANENDGPILQAFK 343
+ PI+ +K
Sbjct: 180 YHAQTEPIVDFYK 192
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
pdb|1YGA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
Length = 342
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 126 YLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIW----- 180
YL+ N G+TVGR ANRIA G F++D ++ N N H + +
Sbjct: 52 YLTDGN-MMGATVGRYANRIAKGVFSLDDGPHKLTVNNCGNTNHSSISSLNLKQYKASPV 110
Query: 181 -----STYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQL-TSDNRLFITMEA--VSTKPT 232
YV + K++ H P+ +E +PG + T + L ++ L + +A V T
Sbjct: 111 ENPSKGVYVVEFKLLDDHTQPNPNE-FPGDLEVTVKYTLNVAEMTLDMEYQAQLVRGDAT 169
Query: 233 PINLTNHSYFNL 244
PIN+TNHSYFNL
Sbjct: 170 PINMTNHSYFNL 181
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD-- 123
F G PG GK TQA+ L+K +HISTGD+LR V+ G G+ + M++G LVPD
Sbjct: 5 FLGPPGAGKGTQAKR-LAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63
Query: 124 -VSYLSSNNPYFGSTV 138
++ + P G+ +
Sbjct: 64 IIALIEEVFPKHGNVI 79
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 34/175 (19%)
Query: 201 GYPGAVIATTTFQLTSDNRLF------ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVL 254
G PGA T +L + I EAV K TP+ Y ++V + L
Sbjct: 7 GPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQ-KGTPLGKKAKEYMERG--ELVPDDL 63
Query: 255 YKKMLQEL-AKAKLFLIDGYPRDKDQADQFVKDTKEPAI----ILYLDAPDDVILARLVK 309
+++E+ K + DG+PR QA+ + ++ + +L + PD+V++ RL
Sbjct: 64 IIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123
Query: 310 RGLTS--------------------GRPDDKEDAIKKRLIKANENDGPILQAFKS 344
R + R DDK + IKKRL E P+++ +K
Sbjct: 124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKK 178
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA I+ K+ HISTGD+ RA ++ G G ++ M QG LVPD
Sbjct: 5 LMGLPGAGKGTQADRIVEKYGTP-HISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 61/102 (59%), Gaps = 6/102 (5%)
Query: 248 DIVREVLYKKMLQELA---KAKLFLIDGYPRDKDQADQFVK--DTK-EPAIILYLDAPDD 301
+I +L ++M Q +A + FLIDG+PR++D + K D K + + +L+ D ++
Sbjct: 66 EITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNE 125
Query: 302 VILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFK 343
+ + R ++RG +SGR DD ++++KR+ ++ PI+ ++
Sbjct: 126 ICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYE 167
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTR-GRNIEAIMKQGGLVP 122
G PG GK TQ I+ K+ H+S G+LLR E + +++ G IE +K+G +VP
Sbjct: 10 GGPGAGKGTQCARIVEKYG-YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVP 64
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 66 FTGKPGTGKETQAQNILSKF--PEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQAQ I+ K+ P+ ISTGD+LRA V++G+ G+ + IM G LV D
Sbjct: 5 LLGAPGAGKGTQAQFIMEKYGIPQ---ISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 27/120 (22%)
Query: 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGL--------------- 312
FL+DG+PR QAD + +L D PD++I+ R+V R +
Sbjct: 81 FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPP 140
Query: 313 ------------TSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVK 360
+ R DD+E+ ++KRL++ ++ P++ + N + + + K
Sbjct: 141 KVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTK 200
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQAQ I+ K+ ISTGD+LRA V++G+ G+ + IM G LV D
Sbjct: 5 LLGAPGAGKGTQAQFIMEKYG-IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 27/120 (22%)
Query: 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGL--------------- 312
FL+DG+PR QAD + +L D PD++I+ R+V R +
Sbjct: 81 FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPP 140
Query: 313 ------------TSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVK 360
+ R DD+E+ ++KRL++ ++ P++ + N + + + K
Sbjct: 141 KVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTK 200
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA + F H++TGD+LRA V +G+ G+ ++A M G LV D
Sbjct: 21 LLGPPGAGKGTQAPRLAENFC-VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 32/132 (24%)
Query: 243 NLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEPA-IILYLDA 298
L ++V E++ K + L K FL+DG+PR QA D ++ KE ++
Sbjct: 73 KLVSDEMVVELIEKNLETPLCKNG-FLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSI 131
Query: 299 PDDVILARLVKRGL----------------------TSGRP-----DDKEDAIKKRLIKA 331
PD +++ R+ R + +G P DD E A+K RL
Sbjct: 132 PDSLLIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAY 191
Query: 332 NENDGPILQAFK 343
+ P+++ ++
Sbjct: 192 HTQTTPLIEYYR 203
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA + F H++TGD+LRA V +G+ G+ ++A M G LV D
Sbjct: 21 LLGPPGAGKGTQAPKLAKNF-CVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 66 FTGKPGTGKETQAQNILSKF--PEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G P GK TQAQ I+ K+ P+ ISTGD+LRA V++G+ G+ + IM G LV D
Sbjct: 5 LLGAPVAGKGTQAQFIMEKYGIPQ---ISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 27/120 (22%)
Query: 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGL--------------- 312
FL+DG+PR QAD + +L D PD++I+ R+V R +
Sbjct: 81 FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPP 140
Query: 313 ------------TSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVK 360
+ R DD+E+ ++KRL++ ++ P++ + N + + + K
Sbjct: 141 KVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTK 200
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA+ I++ + HISTGD+ RA ++ G G + M +G LVPD
Sbjct: 5 LMGLPGAGKGTQAEKIVAAYG-IPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPD 61
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 201 GYPGA--------VIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLAGHDIVRE 252
G PGA ++A S +F A + TP+ L Y + G + E
Sbjct: 7 GLPGAGKGTQAEKIVAAYGIPHISTGDMF---RAAMKEGTPLGLQAKQYMD-RGDLVPDE 62
Query: 253 VLYKKMLQELAKAKL---FLIDGYPRDKDQAD----QFVKDTKEPAIILYLDAPDDVILA 305
V + + L+K FL+DG+PR QA+ ++ ++++D DV++
Sbjct: 63 VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLME 122
Query: 306 RLVKR 310
RL R
Sbjct: 123 RLTGR 127
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVS 125
F G PG+GK TQ+ N L K H+STGDLLR G I+ I+ +G LV D
Sbjct: 34 FLGAPGSGKGTQSLN-LKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQM 92
Query: 126 YLS 128
LS
Sbjct: 93 VLS 95
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 59/172 (34%)
Query: 239 HSYFNLAGHDIVREVLYKK--------------------MLQELAKAKL--------FLI 270
H Y +L+ D++RE KK M+ L KL F++
Sbjct: 53 HCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFIL 112
Query: 271 DGYPRDKDQADQFVKDTKEPAI----ILYLDAPDDVILARLVKRGLT--SG--------- 315
DGYPR+ QA+ K ++ + Y + PD+V++ R+ R + SG
Sbjct: 113 DGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNP 172
Query: 316 ----------------RPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNF 351
R DD ED +KKRL P++ +K+ +N
Sbjct: 173 PKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINL 224
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA+ I+ K+ HISTGD+ RA ++ G ++ + +G LVPD
Sbjct: 5 LMGLPGAGKGTQAERIVEKYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 5/54 (9%)
Query: 72 TGKETQAQNILSKF--PEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
GK TQAQ I+ K+ P+ ISTGD+LRA V++G+ G+ + IM G LV D
Sbjct: 11 AGKGTQAQFIMEKYGIPQ---ISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 27/102 (26%)
Query: 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGL--------------- 312
FL+DG+PR QAD + +L D PD++I+ R+V R +
Sbjct: 81 FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPP 140
Query: 313 ------------TSGRPDDKEDAIKKRLIKANENDGPILQAF 342
+ R DD+E+ ++KRL++ ++ P++ +
Sbjct: 141 KVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
F G PG GK TQA + + +STGD+LR V G G + IM++G LVPD
Sbjct: 9 FLGPPGAGKGTQASRLAQELGFK-KLSTGDILRDHVARGTPLGERVRPIMERGDLVPD 65
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 252 EVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILY----LDAPDDVILARL 307
+++ + + +ELA+ +F DG+PR QA+ + E L ++ P++ ++ R+
Sbjct: 66 DLILELIREELAERVIF--DGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRI 123
Query: 308 VKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH 345
++R GR DD E+ +++RL E P++ +++
Sbjct: 124 LRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEAR 161
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA I KF ISTGD LRA V+ G G + +G LVPD
Sbjct: 13 LLGAPGAGKGTQANFIKEKFG-IPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 27/102 (26%)
Query: 254 LYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKR--- 310
L K+ L+E A +L DG+PR QAD + +L +D P I+ R R
Sbjct: 75 LVKERLKEADCANGYLFDGFPRTIAQADAXKEAGVAIDYVLEIDVPFSEIIERXSGRRTH 134
Query: 311 ---GLT----------------SGRP-----DDKEDAIKKRL 328
G T +G P DDKE+ +KKRL
Sbjct: 135 PASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRL 176
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQ + I ++ A H+STGD+LR ++ G G ++I++ G V D
Sbjct: 10 LIGAPGSGKGTQCEFIKKEYGLA-HLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGD 66
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK T + I + F E H+S+GDLLR + G G +A + QG L+PD
Sbjct: 14 GAPGSGKGTVSSRITTHF-ELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPD 68
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 30/127 (23%)
Query: 246 GHDIVREVLYKKMLQELAKAKLF--LIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVI 303
G I +V+ + L EL + L+DG+PR QA+ + + +I L+ P +VI
Sbjct: 63 GKLIPDDVMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVI-NLNVPFEVI 121
Query: 304 LARLVKRGL--TSG-------------------------RPDDKEDAIKKRLIKANENDG 336
RL R + SG R DDK + + KRL +
Sbjct: 122 KQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTK 181
Query: 337 PILQAFK 343
P+L+ ++
Sbjct: 182 PVLEYYQ 188
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQ + I+ K+ HISTGD+ RA ++ G ++ + +G LVPD
Sbjct: 5 LMGLPGAGKGTQGERIVEKYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 37/161 (22%)
Query: 226 AVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAK---AKLFLIDGYPRDKDQADQ 282
A + TP+ L SY + G + EV + + L K + FL+DG+PR QA+
Sbjct: 37 AAMKEETPLGLEAKSYID-KGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEA 95
Query: 283 FVKDT----KEPAIILYLDAPDDVILARLVKRGLTS------------------------ 314
+ K ++ + DV++ RL R + S
Sbjct: 96 LEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGG 155
Query: 315 ---GRPDDKEDAIKKRLIKANENDGPILQAF--KSHIAKVN 350
R DD E+ + KRL + P+L + K ++ VN
Sbjct: 156 ELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVN 196
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQ + I+ + HISTGD+ RA ++ G ++ + +G LVPD
Sbjct: 5 LMGLPGAGKGTQGERIVEDYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 42/191 (21%)
Query: 201 GYPGAVIATTTFQLTSDNRL-FIT----MEAVSTKPTPINLTNHSYFNLAGHDIVREVLY 255
G PGA T ++ D + I+ A + TP+ L SY + G + EV
Sbjct: 7 GLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTI 65
Query: 256 KKMLQELAK---AKLFLIDGYPRDKDQADQFVKDT----KEPAIILYLDAPDDVILARLV 308
+ + L K + FL+DG+PR QA+ + K ++ ++ DV++ RL
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 309 KRGLTS---------------------------GRPDDKEDAIKKRLIKANENDGPILQA 341
R + S R DD E+ + KRL + P+L
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 342 F--KSHIAKVN 350
+ K ++A VN
Sbjct: 186 YSEKGYLANVN 196
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQ + I+ + HISTGD+ RA ++ G ++ + +G LVPD
Sbjct: 5 LMGLPGAGKGTQGERIVEDYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 42/191 (21%)
Query: 201 GYPGAVIATTTFQLTSDNRL-FIT----MEAVSTKPTPINLTNHSYFNLAGHDIVREVLY 255
G PGA T ++ D + I+ A + TP+ L SY + G + EV
Sbjct: 7 GLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTI 65
Query: 256 KKMLQELAK---AKLFLIDGYPRDKDQADQFVKDT----KEPAIILYLDAPDDVILARLV 308
+ + L K + FL+DG+PR QA+ + K ++ ++ DV++ RL
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 309 KRGLTS---------------------------GRPDDKEDAIKKRLIKANENDGPILQA 341
R + S R DD E+ + KRL + P+L
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 342 F--KSHIAKVN 350
+ K ++A VN
Sbjct: 186 YSEKGYLANVN 196
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQ + I+ + HISTGD+ RA ++ G ++ + +G LVPD
Sbjct: 5 LMGLPGAGKGTQGERIVEDYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 42/191 (21%)
Query: 201 GYPGAVIATTTFQLTSDNRL-FIT----MEAVSTKPTPINLTNHSYFNLAGHDIVREVLY 255
G PGA T ++ D + I+ A + TP+ L SY + G + EV
Sbjct: 7 GLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTI 65
Query: 256 KKMLQELAK---AKLFLIDGYPRDKDQADQFVKDT----KEPAIILYLDAPDDVILARLV 308
+ + L K + FL+DG+PR QA+ + K ++ ++ DV++ RL
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 309 KRGLTS---------------------------GRPDDKEDAIKKRLIKANENDGPILQA 341
R + S R DD E+ + KRL + P+L
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLDF 185
Query: 342 F--KSHIAKVN 350
+ K ++A VN
Sbjct: 186 YSEKGYLANVN 196
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQ + I+ + HISTGD+ RA ++ G ++ + +G LVPD
Sbjct: 5 LMGLPGAGKGTQGERIVEDYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 42/191 (21%)
Query: 201 GYPGAVIATTTFQLTSDNRL-FIT----MEAVSTKPTPINLTNHSYFNLAGHDIVREVLY 255
G PGA T ++ D + I+ A + TP+ L SY + G + EV
Sbjct: 7 GLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTI 65
Query: 256 KKMLQELAK---AKLFLIDGYPRDKDQADQFVKDT----KEPAIILYLDAPDDVILARLV 308
+ + L K + FL+DG+PR QA+ + K ++ ++ DV++ RL
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 309 KRGLTS---------------------------GRPDDKEDAIKKRLIKANENDGPILQA 341
R + S R DD E+ + KRL + P+L
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 342 F--KSHIAKVN 350
+ K ++ VN
Sbjct: 186 YSEKGYLVNVN 196
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQ + I+ + HISTGD+ RA ++ G ++ + +G LVPD
Sbjct: 5 LMGLPGAGKGTQGERIVEDYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 42/191 (21%)
Query: 201 GYPGAVIATTTFQLTSDNRL-FIT----MEAVSTKPTPINLTNHSYFNLAGHDIVREVLY 255
G PGA T ++ D + I+ A + TP+ L SY + G + EV
Sbjct: 7 GLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTI 65
Query: 256 KKMLQELAK---AKLFLIDGYPRDKDQADQFVKDT----KEPAIILYLDAPDDVILARLV 308
+ + L K + FL+DG+PR QA+ + K ++ ++ DV++ RL
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 309 KRGLTS---------------------------GRPDDKEDAIKKRLIKANENDGPILQA 341
R + S R DD E+ + KRL + P+L
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 342 F--KSHIAKVN 350
+ K ++A VN
Sbjct: 186 YSEKGYLANVN 196
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQ + I+ + HISTGD+ RA ++ G ++ + +G LVPD
Sbjct: 5 LMGLPGAGKGTQGERIVEDYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 42/191 (21%)
Query: 201 GYPGAVIATTTFQLTSDNRL-FIT----MEAVSTKPTPINLTNHSYFNLAGHDIVREVLY 255
G PGA T ++ D + I+ A + TP+ L SY + G + EV
Sbjct: 7 GLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTI 65
Query: 256 KKMLQELAK---AKLFLIDGYPRDKDQADQFVKDT----KEPAIILYLDAPDDVILARLV 308
+ + L K + FL+DG+PR QA+ + K ++ ++ DV++ RL
Sbjct: 66 GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 309 KRGLTS---------------------------GRPDDKEDAIKKRLIKANENDGPILQA 341
R + S R DD E+ + KRL + P+L
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 342 F--KSHIAKVN 350
+ K ++A VN
Sbjct: 186 YSEKGYLANVN 196
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK T + I F E H+S+GDLLR + G G + + QG L+PD
Sbjct: 13 GAPGSGKGTVSSRITKHF-ELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPD 67
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 30/127 (23%)
Query: 246 GHDIVREVLYKKMLQELAKAKLF--LIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVI 303
G I +V+ + +L EL + L+DG+PR QA+ + + +I L+ P +VI
Sbjct: 62 GKLIPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVI-NLNVPFEVI 120
Query: 304 LARLVKRGLTSG---------------------------RPDDKEDAIKKRLIKANENDG 336
RL R + G R DD+ + + KRL
Sbjct: 121 KQRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTE 180
Query: 337 PILQAFK 343
P+L+ ++
Sbjct: 181 PVLEYYR 187
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 268 FLIDGYPRDKDQA----DQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDA 323
F++DGYPR +QA + + + +L ++V+L RL RG R DD +D
Sbjct: 101 FILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG----RADDTDDV 156
Query: 324 IKKRLIKANENDGPILQAFKSHIAKVN 350
I R+ + P+L+ ++ + V+
Sbjct: 157 ILNRMKVYRDETAPLLEYYRDQLKTVD 183
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 56 IPLQVEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIM 115
+P + G PG GK TQA + K ISTG+L R + G G + +
Sbjct: 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLG-IPQISTGELFRRNIEEGTKLGVEAKRYL 73
Query: 116 KQGGLVP 122
G LVP
Sbjct: 74 DAGDLVP 80
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 268 FLIDGYPRDKDQA----DQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDA 323
F++DGYPR +QA + + + +L ++V+L RL RG R DD +D
Sbjct: 81 FILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG----RADDTDDV 136
Query: 324 IKKRLIKANENDGPILQAFKSHIAKVN 350
I R+ + P+L+ ++ + V+
Sbjct: 137 ILNRMKVYRDETAPLLEYYRDQLKTVD 163
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVP 122
G PG GK TQA + K ISTG+L R + G G + + G LVP
Sbjct: 5 LLGPPGAGKGTQAVKLAEKLG-IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK T + I+ + HISTGD+ RA ++ G ++ + +G LVPD
Sbjct: 5 LMGLPGAGKGTLGERIVEDYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 37/161 (22%)
Query: 226 AVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAK---AKLFLIDGYPRDKDQADQ 282
A + TP+ L SY + G + EV + + L K + FL+DG+PR QA+
Sbjct: 37 AAMKEETPLGLEAKSYID-KGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEA 95
Query: 283 FVKDT----KEPAIILYLDAPDDVILARLVKRGLTS------------------------ 314
+ K ++ ++ DV++ RL R + S
Sbjct: 96 LEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGG 155
Query: 315 ---GRPDDKEDAIKKRLIKANENDGPILQAF--KSHIAKVN 350
R DD E+ + KRL + P+L + K ++A VN
Sbjct: 156 ELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVN 196
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 30/121 (24%)
Query: 253 VLYKKMLQELA--KAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKR 310
V+ + M+ EL + + +L+DG+PR QA+ K E +++ L+ P + + RL +R
Sbjct: 90 VITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKIC-EVDLVISLNIPFETLKDRLSRR 148
Query: 311 GL----------------------TSGRP-----DDKEDAIKKRLIKANENDGPILQAFK 343
+ +G P DDK +A+ RL + + P+++ +K
Sbjct: 149 WIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYK 208
Query: 344 S 344
S
Sbjct: 209 S 209
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK T Q I F H+S+G LR ++ G + +++ LVPD
Sbjct: 34 GPPGSGKGTVCQRIAQNFGLQ-HLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPD 88
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G G+GK TQ + K+ A HI +G + R + G G+ + + +G LVPD
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLA-HIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G G+GK TQ + K+ A HI +G + R + G G+ + + +G LVPD
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLA-HIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK T Q I F H+S+G LR ++ G + +++ LVPD
Sbjct: 12 GPPGSGKGTVCQRIAQNFGLQ-HLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPD 66
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 30/121 (24%)
Query: 253 VLYKKMLQELA--KAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKR 310
V+ + M+ EL + + +L+DG+PR QA+ K E +++ L+ P + + RL +R
Sbjct: 68 VITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKIC-EVDLVISLNIPFETLKDRLSRR 126
Query: 311 GL----------------------TSGRP-----DDKEDAIKKRLIKANENDGPILQAFK 343
+ +G P DDK +A+ R + + P+++ +K
Sbjct: 127 WIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYK 186
Query: 344 S 344
S
Sbjct: 187 S 187
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGR--NIEAIMKQGGL 120
P +G GTGK T + + +++P++ S R R G G+ N ++ + +
Sbjct: 4 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP-RAGEVNGKDYNFVSVDEFKSM 62
Query: 121 VPD---VSYLSSNNPYFGSTVGRVANRIAGGKFTI 152
+ + + + + Y+GSTV V GK I
Sbjct: 63 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCI 97
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGR--NIEAIMKQGGL 120
P +G GTGK T + + +++P++ S R R G G+ N ++ + +
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP-RAGEVNGKDYNFVSVDEFKSM 61
Query: 121 VPD---VSYLSSNNPYFGSTVGRVANRIAGGKFTI 152
+ + + + + Y+GSTV V GK I
Sbjct: 62 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCI 96
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGR--NIEAIMKQGGL 120
P +G GTGK T + + +++P++ S R R G G+ N ++ + +
Sbjct: 19 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTP-RAGEVNGKDYNFVSVDEFKSM 77
Query: 121 VPD---VSYLSSNNPYFGSTVGRVANRIAGGKFTI 152
+ + + + + Y+GSTV V GK I
Sbjct: 78 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCI 112
>pdb|1DTZ|A Chain A, Structure Of Camel Apo-Lactoferrin Demonstrates Its Dual
Role In Sequestering And Transporting Ferric Ions
Simultaneously:crystal Structure Of Camel
Apo-Lactoferrin At 2.6a Resolution.
pdb|1I6Q|A Chain A, Formation Of A Protein Intermediate And Its Trapping By
The Simultaneous Crystallization Process: Crystal
Structure Of An Iron-Saturated Intermediate In The Fe3+
Binding Pathway Of Camel Lactoferrin At 2.7 Resolution
Length = 689
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 276 DKDQADQFV-KDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANEN 334
D+DQ + +T++P +DA + LAR+ + + + KED I K L+KA E
Sbjct: 223 DRDQYELLCPNNTRKP-----VDAFQECHLARVPSHAVVARSVNGKEDLIWKLLVKAQEK 277
Query: 335 DG----PILQAFKSHIAKVNFLHK 354
G Q F S + + L K
Sbjct: 278 FGRGKPSAFQLFGSPAGQKDLLFK 301
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLL 97
G PG GK T A I S+ IH+++G +L
Sbjct: 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLL 97
G PG GK T A I S+ IH+++G +L
Sbjct: 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLL 97
G PG GK T A I S+ IH+++G +L
Sbjct: 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLL 97
G PG GK T A I S+ IH+++G +L
Sbjct: 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLL 97
G PG GK T A I S+ IH+++G +L
Sbjct: 56 LAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|3PGX|A Chain A, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
pdb|3PGX|B Chain B, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
pdb|3PGX|C Chain C, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
pdb|3PGX|D Chain D, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
Length = 280
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 274 PRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTS-GRPD 318
P D D+ + V+D A+ LD DD L LV G+ GR D
Sbjct: 62 PEDLDETARLVEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLD 107
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98
TG PGTGK + A+ I ++ H+ G L++
Sbjct: 15 ITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,301,839
Number of Sequences: 62578
Number of extensions: 493041
Number of successful extensions: 1349
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 134
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)