Query psy11897
Match_columns 363
No_of_seqs 252 out of 1881
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 21:44:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079|consensus 100.0 5E-34 1.1E-38 250.5 13.7 172 63-360 10-185 (195)
2 PLN02674 adenylate kinase 100.0 4.5E-32 9.7E-37 253.0 14.4 175 61-361 31-238 (244)
3 PLN02459 probable adenylate ki 100.0 4.3E-31 9.3E-36 247.8 15.0 176 61-361 29-244 (261)
4 PRK11055 galM galactose-1-epim 100.0 2E-31 4.3E-36 261.1 13.2 184 88-276 11-206 (342)
5 TIGR02636 galM_Leloir galactos 100.0 6.2E-31 1.3E-35 257.3 13.0 184 88-276 6-201 (335)
6 PRK14529 adenylate kinase; Pro 100.0 1.3E-30 2.7E-35 240.6 12.9 173 62-361 1-217 (223)
7 KOG1604|consensus 100.0 1E-30 2.2E-35 247.0 10.3 188 83-276 18-219 (353)
8 PTZ00485 aldolase 1-epimerase; 100.0 3.1E-30 6.8E-35 254.2 11.6 184 88-276 15-232 (376)
9 PRK13808 adenylate kinase; Pro 100.0 1.1E-29 2.4E-34 245.8 13.8 174 62-361 1-186 (333)
10 PRK14528 adenylate kinase; Pro 100.0 2.5E-29 5.4E-34 226.4 15.2 173 62-360 2-180 (186)
11 PRK14526 adenylate kinase; Pro 100.0 4E-29 8.6E-34 229.4 14.8 173 62-361 1-202 (211)
12 PTZ00088 adenylate kinase 1; P 100.0 7.5E-29 1.6E-33 230.1 15.6 179 58-361 3-224 (229)
13 cd09019 galactose_mutarotase_l 100.0 2.3E-29 5E-34 245.3 12.3 183 89-276 2-195 (326)
14 TIGR01351 adk adenylate kinase 100.0 8E-29 1.7E-33 226.9 14.8 173 63-360 1-203 (210)
15 PLN00194 aldose 1-epimerase; P 100.0 3.3E-29 7.2E-34 245.2 12.9 182 88-276 11-208 (337)
16 PRK14531 adenylate kinase; Pro 100.0 2.4E-28 5.3E-33 219.2 13.8 169 62-361 3-177 (183)
17 PRK14532 adenylate kinase; Pro 100.0 1.1E-27 2.5E-32 215.1 15.0 174 62-361 1-180 (188)
18 PRK00279 adk adenylate kinase; 100.0 1.6E-27 3.4E-32 219.1 15.8 174 62-361 1-207 (215)
19 PF00406 ADK: Adenylate kinase 99.9 3.5E-27 7.6E-32 205.0 11.5 145 66-345 1-149 (151)
20 PRK14527 adenylate kinase; Pro 99.9 1.3E-26 2.9E-31 209.1 13.8 173 62-361 7-185 (191)
21 PLN02200 adenylate kinase fami 99.9 5.4E-26 1.2E-30 211.9 16.9 172 60-360 42-216 (234)
22 COG0563 Adk Adenylate kinase a 99.9 1.2E-26 2.7E-31 207.4 11.8 168 62-361 1-172 (178)
23 PRK02496 adk adenylate kinase; 99.9 2.5E-26 5.5E-31 205.8 13.7 171 61-361 1-177 (184)
24 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 5E-26 1.1E-30 203.1 15.4 171 64-361 2-177 (183)
25 cd01428 ADK Adenylate kinase ( 99.9 2.3E-25 4.9E-30 200.2 16.7 170 63-358 1-194 (194)
26 PLN02842 nucleotide kinase 99.9 4E-26 8.7E-31 230.9 13.1 171 66-361 2-195 (505)
27 COG2017 GalM Galactose mutarot 99.9 8E-26 1.7E-30 218.8 11.0 177 88-275 14-199 (308)
28 PRK15172 putative aldose-1-epi 99.9 1.3E-25 2.8E-30 216.6 12.1 174 87-276 11-194 (300)
29 PRK14530 adenylate kinase; Pro 99.9 8.2E-25 1.8E-29 201.1 15.7 168 62-360 4-205 (215)
30 KOG3078|consensus 99.9 4.6E-25 9.9E-30 202.5 12.2 168 60-353 14-210 (235)
31 TIGR01360 aden_kin_iso1 adenyl 99.9 2.3E-23 5.1E-28 186.0 14.5 173 63-360 5-179 (188)
32 cd09022 Aldose_epim_Ec_YihR Al 99.9 4.8E-22 1.1E-26 190.1 14.4 136 131-276 33-174 (284)
33 PF01263 Aldose_epim: Aldose 1 99.8 1.2E-21 2.7E-26 187.6 5.0 175 88-275 2-189 (300)
34 cd09024 Aldose_epim_lacX Aldos 99.8 1.1E-18 2.4E-23 167.4 9.2 161 90-271 2-174 (288)
35 cd01081 Aldose_epim aldose 1-e 99.8 1.5E-17 3.2E-22 157.6 14.5 132 131-271 38-174 (284)
36 cd09021 Aldose_epim_Ec_YphB al 99.7 1.4E-17 3.1E-22 158.3 14.0 128 133-275 37-171 (273)
37 cd09025 Aldose_epim_Slr1438 Al 99.6 1.7E-15 3.7E-20 144.2 6.4 161 88-270 3-176 (271)
38 COG0194 Gmk Guanylate kinase [ 99.5 5.9E-13 1.3E-17 118.4 13.6 158 62-355 5-171 (191)
39 PRK13973 thymidylate kinase; P 99.4 9.2E-13 2E-17 121.1 10.6 88 270-361 104-199 (213)
40 PRK13974 thymidylate kinase; P 99.4 1.4E-12 3.1E-17 119.7 11.0 84 269-361 109-199 (212)
41 PRK08356 hypothetical protein; 99.4 3E-12 6.5E-17 115.9 11.6 40 268-311 97-136 (195)
42 PRK01184 hypothetical protein; 99.4 9E-12 2E-16 111.4 13.0 60 267-331 82-143 (184)
43 smart00072 GuKc Guanylate kina 99.3 1.6E-11 3.5E-16 110.2 12.1 72 268-352 96-168 (184)
44 PHA02530 pseT polynucleotide k 99.2 3.6E-11 7.7E-16 115.6 10.8 88 268-359 78-173 (300)
45 PRK06217 hypothetical protein; 99.2 1.8E-10 3.9E-15 103.2 11.5 37 61-98 1-37 (183)
46 PRK03839 putative kinase; Prov 99.2 9.2E-11 2E-15 104.6 9.1 36 62-98 1-36 (180)
47 PRK14737 gmk guanylate kinase; 99.1 9.5E-10 2E-14 99.2 13.2 82 62-148 5-94 (186)
48 PRK08118 topology modulation p 99.1 1.1E-10 2.5E-15 103.3 7.1 36 61-97 1-36 (167)
49 PRK14738 gmk guanylate kinase; 99.1 5.3E-10 1.1E-14 102.3 11.2 72 278-360 113-186 (206)
50 cd09020 D-hex-6-P-epi_like D-h 99.0 3.8E-10 8.2E-15 107.5 6.1 135 89-246 2-150 (269)
51 COG0125 Tmk Thymidylate kinase 99.0 6.2E-10 1.4E-14 102.0 7.0 70 289-361 127-196 (208)
52 PRK13949 shikimate kinase; Pro 99.0 6.3E-09 1.4E-13 92.4 13.0 38 62-100 2-39 (169)
53 PRK13975 thymidylate kinase; P 99.0 1.3E-09 2.9E-14 98.0 7.7 71 285-360 109-182 (196)
54 PRK08233 hypothetical protein; 99.0 2.1E-09 4.6E-14 95.2 8.8 68 289-360 97-169 (182)
55 TIGR00041 DTMP_kinase thymidyl 99.0 3.6E-09 7.9E-14 95.1 10.5 74 281-361 117-194 (195)
56 PLN02772 guanylate kinase 99.0 7.7E-09 1.7E-13 102.5 13.3 83 62-148 136-226 (398)
57 TIGR03263 guanyl_kin guanylate 99.0 1.1E-08 2.4E-13 90.8 12.7 53 277-335 100-152 (180)
58 cd01672 TMPK Thymidine monopho 98.9 4.2E-09 9.2E-14 94.1 9.2 75 282-360 118-192 (200)
59 PRK00698 tmk thymidylate kinas 98.9 1.8E-09 3.9E-14 97.6 6.7 70 288-361 126-195 (205)
60 PRK00300 gmk guanylate kinase; 98.9 2.2E-08 4.8E-13 90.8 13.8 70 278-358 105-174 (205)
61 PRK04040 adenylate kinase; Pro 98.9 1.8E-08 3.9E-13 91.0 12.5 43 61-103 2-45 (188)
62 PRK00081 coaE dephospho-CoA ki 98.9 4.1E-09 8.9E-14 95.5 7.5 52 62-115 3-54 (194)
63 PLN02924 thymidylate kinase 98.9 3.6E-09 7.7E-14 97.9 7.1 56 60-118 15-70 (220)
64 PRK13947 shikimate kinase; Pro 98.9 1.8E-08 3.9E-13 88.7 11.0 38 62-100 2-39 (171)
65 PRK10078 ribose 1,5-bisphospho 98.9 1.4E-08 3.1E-13 91.1 10.3 62 285-360 106-168 (186)
66 COG1102 Cmk Cytidylate kinase 98.9 6.1E-09 1.3E-13 90.7 7.2 51 62-116 1-51 (179)
67 PRK00625 shikimate kinase; Pro 98.8 2.3E-08 5E-13 89.2 11.0 38 62-100 1-38 (173)
68 PF02223 Thymidylate_kin: Thym 98.8 7.3E-10 1.6E-14 99.2 0.5 80 277-361 104-185 (186)
69 PRK03731 aroL shikimate kinase 98.8 4.2E-08 9.1E-13 86.5 11.7 35 62-97 3-37 (171)
70 PRK07261 topology modulation p 98.8 1.8E-08 4E-13 89.5 8.5 34 62-96 1-34 (171)
71 PF00625 Guanylate_kin: Guanyl 98.8 6.2E-08 1.3E-12 86.7 11.4 54 277-337 102-156 (183)
72 PF13671 AAA_33: AAA domain; P 98.8 5.4E-09 1.2E-13 88.9 4.1 36 64-101 2-37 (143)
73 PRK14730 coaE dephospho-CoA ki 98.7 3.7E-08 7.9E-13 89.5 8.7 53 62-115 2-54 (195)
74 COG1936 Predicted nucleotide k 98.7 1.1E-07 2.3E-12 83.9 10.1 33 62-96 1-33 (180)
75 COG0703 AroK Shikimate kinase 98.7 4.1E-08 8.8E-13 87.0 7.2 48 62-116 3-50 (172)
76 cd02022 DPCK Dephospho-coenzym 98.7 4.1E-08 8.9E-13 87.7 7.2 51 63-115 1-51 (179)
77 PRK14734 coaE dephospho-CoA ki 98.7 2.8E-08 6E-13 90.7 5.7 52 62-115 2-53 (200)
78 PRK07933 thymidylate kinase; V 98.6 1.5E-07 3.2E-12 86.7 9.8 70 288-361 131-206 (213)
79 PRK04182 cytidylate kinase; Pr 98.6 4.4E-07 9.6E-12 80.0 12.3 41 62-103 1-41 (180)
80 TIGR02322 phosphon_PhnN phosph 98.6 5E-07 1.1E-11 80.2 11.3 61 290-361 111-171 (179)
81 TIGR02173 cyt_kin_arch cytidyl 98.6 8.1E-07 1.8E-11 77.7 11.9 39 63-102 2-40 (171)
82 PRK12339 2-phosphoglycerate ki 98.5 2E-08 4.4E-13 91.4 1.3 44 62-106 4-47 (197)
83 cd00464 SK Shikimate kinase (S 98.5 8E-07 1.7E-11 76.4 11.2 37 63-100 1-37 (154)
84 cd01673 dNK Deoxyribonucleosid 98.5 4.6E-07 1E-11 81.4 10.0 65 287-353 122-186 (193)
85 KOG3347|consensus 98.5 3.8E-07 8.3E-12 78.6 8.8 39 59-98 5-43 (176)
86 PRK06762 hypothetical protein; 98.5 6.8E-07 1.5E-11 78.4 10.6 70 281-360 87-156 (166)
87 PRK06547 hypothetical protein; 98.5 1.7E-06 3.8E-11 77.0 12.7 36 61-97 15-50 (172)
88 TIGR00152 dephospho-CoA kinase 98.5 3.7E-07 8E-12 82.0 7.8 51 63-114 1-51 (188)
89 PRK13948 shikimate kinase; Pro 98.5 1.6E-06 3.5E-11 77.9 11.5 37 62-99 11-47 (182)
90 cd02020 CMPK Cytidine monophos 98.5 1.2E-06 2.5E-11 74.6 10.0 32 64-96 2-33 (147)
91 cd02021 GntK Gluconate kinase 98.4 2.8E-06 6.2E-11 73.1 11.9 32 64-96 2-33 (150)
92 cd02030 NDUO42 NADH:Ubiquinone 98.4 9.3E-07 2E-11 81.6 9.3 69 288-361 141-214 (219)
93 TIGR01313 therm_gnt_kin carboh 98.4 1.6E-06 3.4E-11 75.8 10.3 32 64-96 1-32 (163)
94 PLN02422 dephospho-CoA kinase 98.4 6.7E-07 1.5E-11 83.4 8.1 49 63-113 3-51 (232)
95 PRK14731 coaE dephospho-CoA ki 98.4 4.8E-07 1E-11 82.9 7.1 61 289-359 133-193 (208)
96 KOG0707|consensus 98.4 1.7E-06 3.6E-11 79.7 10.3 63 290-359 148-212 (231)
97 TIGR03574 selen_PSTK L-seryl-t 98.4 7.9E-07 1.7E-11 83.5 8.3 62 284-353 90-152 (249)
98 PRK00131 aroK shikimate kinase 98.4 2.1E-06 4.6E-11 75.1 10.2 37 61-98 4-40 (175)
99 PF13207 AAA_17: AAA domain; P 98.4 2.4E-07 5.3E-12 76.6 3.0 33 63-96 1-33 (121)
100 PRK13946 shikimate kinase; Pro 98.3 5.7E-06 1.2E-10 74.2 11.8 36 60-96 9-44 (184)
101 PRK13976 thymidylate kinase; P 98.3 1.3E-06 2.9E-11 80.2 7.2 24 63-86 2-25 (209)
102 PRK05057 aroK shikimate kinase 98.3 9.8E-06 2.1E-10 72.0 11.6 35 62-97 5-39 (172)
103 cd02025 PanK Pantothenate kina 98.3 1.1E-05 2.3E-10 74.7 12.2 72 287-358 126-218 (220)
104 cd00227 CPT Chloramphenicol (C 98.3 5.2E-06 1.1E-10 73.7 9.3 34 63-96 4-38 (175)
105 COG0237 CoaE Dephospho-CoA kin 98.3 1.6E-06 3.4E-11 79.2 6.1 48 61-110 2-49 (201)
106 PTZ00451 dephospho-CoA kinase; 98.2 4.2E-06 9.2E-11 78.6 8.1 43 62-105 2-44 (244)
107 PLN02199 shikimate kinase 98.2 9.9E-06 2.2E-10 77.8 10.6 39 61-100 102-140 (303)
108 TIGR00235 udk uridine kinase. 98.2 1.1E-05 2.4E-10 73.6 10.1 35 62-96 7-43 (207)
109 PRK14732 coaE dephospho-CoA ki 98.2 4.7E-06 1E-10 75.8 7.2 40 64-105 2-41 (196)
110 PRK14733 coaE dephospho-CoA ki 98.2 8.8E-06 1.9E-10 74.5 8.7 42 60-102 5-46 (204)
111 PRK07667 uridine kinase; Provi 98.1 2.5E-05 5.4E-10 70.6 11.2 37 62-98 18-58 (193)
112 PRK14021 bifunctional shikimat 98.1 8.8E-06 1.9E-10 85.0 9.3 48 62-116 7-54 (542)
113 PRK13951 bifunctional shikimat 98.1 1.5E-05 3.3E-10 82.1 10.8 37 62-99 1-37 (488)
114 COG1428 Deoxynucleoside kinase 98.1 1.7E-05 3.7E-10 72.3 9.7 31 60-91 3-33 (216)
115 TIGR01663 PNK-3'Pase polynucle 98.1 1.7E-05 3.7E-10 82.1 10.3 33 63-96 371-403 (526)
116 PRK05480 uridine/cytidine kina 98.0 4.3E-05 9.3E-10 69.6 11.1 36 61-96 6-43 (209)
117 PF01121 CoaE: Dephospho-CoA k 98.0 2.6E-06 5.7E-11 76.5 2.9 49 63-113 2-50 (180)
118 KOG3327|consensus 98.0 6.4E-06 1.4E-10 73.4 4.6 77 277-361 112-188 (208)
119 PTZ00301 uridine kinase; Provi 98.0 5.8E-05 1.3E-09 69.4 11.1 25 289-313 126-150 (210)
120 PRK08154 anaerobic benzoate ca 98.0 4.8E-05 1E-09 74.0 10.8 36 60-96 132-167 (309)
121 PRK06696 uridine kinase; Valid 98.0 7.4E-05 1.6E-09 69.0 11.4 37 61-97 22-62 (223)
122 PRK09270 nucleoside triphospha 97.9 6.9E-05 1.5E-09 69.5 10.7 60 266-329 138-197 (229)
123 PRK03333 coaE dephospho-CoA ki 97.9 2.3E-05 4.9E-10 78.8 7.0 41 62-104 2-42 (395)
124 PRK05541 adenylylsulfate kinas 97.8 0.00011 2.4E-09 65.0 9.5 27 60-86 6-32 (176)
125 COG2019 AdkA Archaeal adenylat 97.8 0.00028 6E-09 62.3 11.4 41 60-101 3-44 (189)
126 cd09023 Aldose_epim_Ec_c4013 A 97.8 0.00014 3E-09 69.9 10.1 100 164-272 69-176 (284)
127 PHA03132 thymidine kinase; Pro 97.8 0.00014 3E-09 75.9 10.3 25 61-85 257-281 (580)
128 COG0572 Udk Uridine kinase [Nu 97.8 0.00017 3.7E-09 66.4 9.8 69 266-345 109-178 (218)
129 PRK09825 idnK D-gluconate kina 97.7 0.00021 4.5E-09 63.8 9.7 62 288-358 97-158 (176)
130 PRK05439 pantothenate kinase; 97.7 0.00024 5.1E-09 69.1 10.8 36 62-97 87-128 (311)
131 COG3709 Uncharacterized compon 97.7 0.00048 1E-08 60.5 11.4 34 292-331 117-150 (192)
132 PF01202 SKI: Shikimate kinase 97.7 6.9E-05 1.5E-09 65.5 5.8 30 70-100 1-30 (158)
133 cd02023 UMPK Uridine monophosp 97.7 0.00058 1.3E-08 61.6 11.8 33 64-96 2-36 (198)
134 TIGR00554 panK_bact pantothena 97.7 0.00029 6.3E-09 67.9 10.0 24 288-311 195-218 (290)
135 KOG3354|consensus 97.6 0.00021 4.5E-09 62.3 7.3 33 63-96 14-46 (191)
136 TIGR00017 cmk cytidylate kinas 97.6 7E-05 1.5E-09 69.2 4.2 38 62-100 3-40 (217)
137 COG0283 Cmk Cytidylate kinase 97.6 6.7E-05 1.5E-09 68.7 3.9 39 62-101 5-43 (222)
138 COG0645 Predicted kinase [Gene 97.6 0.00036 7.7E-09 61.6 8.2 37 64-102 4-40 (170)
139 COG1618 Predicted nucleotide k 97.5 4E-05 8.6E-10 67.2 2.1 43 60-103 4-46 (179)
140 PRK05416 glmZ(sRNA)-inactivati 97.5 0.00084 1.8E-08 64.7 11.0 29 62-92 7-35 (288)
141 cd02019 NK Nucleoside/nucleoti 97.5 0.00013 2.9E-09 54.8 4.4 28 64-92 2-32 (69)
142 PRK11545 gntK gluconate kinase 97.5 0.00044 9.6E-09 60.9 8.3 62 289-359 90-151 (163)
143 COG4639 Predicted kinase [Gene 97.5 0.00018 4E-09 62.6 5.6 36 275-310 82-117 (168)
144 PF13238 AAA_18: AAA domain; P 97.5 9.5E-05 2.1E-09 61.0 3.3 22 64-85 1-22 (129)
145 PRK12338 hypothetical protein; 97.4 0.00014 3E-09 70.8 4.7 42 61-103 4-45 (319)
146 PRK00023 cmk cytidylate kinase 97.4 9.5E-05 2.1E-09 68.6 3.4 38 62-100 5-42 (225)
147 TIGR03575 selen_PSTK_euk L-ser 97.4 0.00059 1.3E-08 67.2 8.9 36 64-99 2-42 (340)
148 PF08433 KTI12: Chromatin asso 97.4 0.00024 5.2E-09 67.8 5.9 33 280-312 89-121 (270)
149 cd02024 NRK1 Nicotinamide ribo 97.4 0.00017 3.6E-09 65.2 4.5 35 64-98 2-36 (187)
150 PLN02348 phosphoribulokinase 97.4 0.0014 2.9E-08 65.6 11.2 25 62-86 50-74 (395)
151 cd02027 APSK Adenosine 5'-phos 97.4 0.00059 1.3E-08 59.1 7.7 22 64-85 2-23 (149)
152 PRK09518 bifunctional cytidyla 97.4 0.00013 2.9E-09 78.6 4.3 38 62-100 2-39 (712)
153 cd00071 GMPK Guanosine monopho 97.4 0.00039 8.5E-09 59.4 6.4 23 64-86 2-24 (137)
154 PF00004 AAA: ATPase family as 97.4 0.00019 4.1E-09 59.5 4.3 32 64-96 1-34 (132)
155 PRK05800 cobU adenosylcobinami 97.4 0.0002 4.3E-09 63.7 4.7 40 62-101 2-42 (170)
156 PRK13477 bifunctional pantoate 97.4 0.00017 3.6E-09 74.6 4.6 38 62-100 285-322 (512)
157 PF13521 AAA_28: AAA domain; P 97.3 0.00023 5E-09 62.2 4.2 37 63-103 1-37 (163)
158 cd02026 PRK Phosphoribulokinas 97.3 0.004 8.7E-08 59.5 13.0 33 64-96 2-36 (273)
159 PRK07429 phosphoribulokinase; 97.2 0.0042 9.2E-08 60.9 12.2 36 61-96 8-45 (327)
160 PLN02318 phosphoribulokinase/u 97.2 0.0041 8.9E-08 65.2 12.2 35 62-96 66-100 (656)
161 PF06414 Zeta_toxin: Zeta toxi 97.2 0.00044 9.5E-09 62.7 4.5 42 59-101 13-56 (199)
162 COG1072 CoaA Panthothenate kin 97.2 0.00073 1.6E-08 64.1 5.9 31 286-316 207-237 (283)
163 PRK03846 adenylylsulfate kinas 97.1 0.0021 4.6E-08 58.1 8.4 25 61-85 24-48 (198)
164 KOG3877|consensus 97.1 0.00099 2.1E-08 63.1 6.2 30 62-92 72-101 (393)
165 PRK04220 2-phosphoglycerate ki 97.1 0.0005 1.1E-08 66.4 4.3 42 61-103 92-133 (301)
166 smart00382 AAA ATPases associa 97.0 0.0005 1.1E-08 56.2 3.1 24 63-86 4-27 (148)
167 cd09269 deoxyribose_mutarotase 97.0 0.0027 6E-08 61.3 8.4 97 148-244 42-146 (293)
168 PRK12269 bifunctional cytidyla 97.0 0.00057 1.2E-08 74.8 3.8 39 62-101 35-73 (863)
169 cd02028 UMPK_like Uridine mono 96.9 0.00094 2E-08 59.7 4.1 35 64-98 2-40 (179)
170 PHA02575 1 deoxynucleoside mon 96.9 0.00096 2.1E-08 61.7 4.1 40 63-103 2-41 (227)
171 PF07931 CPT: Chloramphenicol 96.9 0.0017 3.8E-08 57.9 5.5 35 64-98 4-39 (174)
172 PLN02165 adenylate isopentenyl 96.8 0.0025 5.5E-08 62.4 6.7 33 63-96 45-77 (334)
173 PF00485 PRK: Phosphoribulokin 96.8 0.00085 1.8E-08 60.5 3.0 23 64-86 2-24 (194)
174 COG4088 Predicted nucleotide k 96.7 0.00094 2E-08 61.0 2.6 24 62-85 2-25 (261)
175 PF05496 RuvB_N: Holliday junc 96.7 0.002 4.4E-08 59.7 4.7 32 63-94 52-83 (233)
176 PF03266 NTPase_1: NTPase; In 96.7 0.0011 2.3E-08 58.9 2.8 23 63-85 1-23 (168)
177 PF08477 Miro: Miro-like prote 96.7 0.0013 2.7E-08 53.7 3.0 24 63-86 1-24 (119)
178 PRK11860 bifunctional 3-phosph 96.7 0.0015 3.2E-08 70.0 4.1 39 61-100 442-480 (661)
179 PRK08099 bifunctional DNA-bind 96.6 0.0018 3.8E-08 65.3 4.1 30 60-90 218-247 (399)
180 PRK00889 adenylylsulfate kinas 96.6 0.0021 4.4E-08 56.8 4.0 23 63-85 6-28 (175)
181 PF07728 AAA_5: AAA domain (dy 96.6 0.0019 4.1E-08 54.6 3.7 24 63-86 1-24 (139)
182 PRK00091 miaA tRNA delta(2)-is 96.6 0.0021 4.5E-08 62.5 4.2 32 63-95 6-37 (307)
183 COG3265 GntK Gluconate kinase 96.6 0.0052 1.1E-07 53.2 6.1 29 67-96 1-29 (161)
184 TIGR02881 spore_V_K stage V sp 96.6 0.002 4.2E-08 61.0 3.9 26 60-85 41-66 (261)
185 KOG0744|consensus 96.6 0.0028 6.2E-08 61.4 4.8 24 63-86 179-202 (423)
186 PLN00020 ribulose bisphosphate 96.5 0.003 6.4E-08 62.7 4.8 54 59-115 146-200 (413)
187 TIGR00174 miaA tRNA isopenteny 96.5 0.0025 5.4E-08 61.3 4.2 31 64-95 2-32 (287)
188 KOG3220|consensus 96.5 0.0017 3.7E-08 58.9 2.5 50 64-115 4-53 (225)
189 PLN02840 tRNA dimethylallyltra 96.5 0.0037 8.1E-08 63.1 5.1 32 63-95 23-54 (421)
190 PRK12337 2-phosphoglycerate ki 96.4 0.0031 6.7E-08 64.3 4.3 42 61-103 255-296 (475)
191 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0023 4.9E-08 63.3 3.1 23 64-86 81-103 (361)
192 PF10662 PduV-EutP: Ethanolami 96.4 0.0027 5.8E-08 54.9 3.0 25 61-85 1-25 (143)
193 COG0466 Lon ATP-dependent Lon 96.4 0.0035 7.6E-08 66.3 4.3 34 63-96 352-386 (782)
194 cd00009 AAA The AAA+ (ATPases 96.4 0.0031 6.7E-08 52.0 3.3 23 63-85 21-43 (151)
195 KOG0738|consensus 96.4 0.017 3.6E-07 57.4 8.7 33 64-96 248-281 (491)
196 PF13245 AAA_19: Part of AAA d 96.3 0.0032 7E-08 48.4 3.0 21 64-84 13-34 (76)
197 PF05729 NACHT: NACHT domain 96.3 0.0028 6.1E-08 54.3 2.9 22 64-85 3-24 (166)
198 COG1224 TIP49 DNA helicase TIP 96.3 0.017 3.7E-07 56.8 8.4 41 63-103 67-110 (450)
199 PRK06761 hypothetical protein; 96.3 0.0035 7.6E-08 60.2 3.6 24 63-86 5-28 (282)
200 PHA00729 NTP-binding motif con 96.3 0.0034 7.4E-08 58.3 3.4 24 62-85 18-41 (226)
201 KOG1594|consensus 96.3 0.011 2.3E-07 55.6 6.6 74 173-246 91-175 (305)
202 PF13401 AAA_22: AAA domain; P 96.3 0.0031 6.7E-08 52.3 2.7 23 63-85 6-28 (131)
203 TIGR01526 nadR_NMN_Atrans nico 96.2 0.0042 9.1E-08 60.9 3.9 29 61-90 162-190 (325)
204 PF03029 ATP_bind_1: Conserved 96.2 0.0026 5.6E-08 59.6 2.2 21 66-86 1-21 (238)
205 COG1126 GlnQ ABC-type polar am 96.1 0.0039 8.4E-08 57.4 2.9 31 62-96 29-59 (240)
206 TIGR00101 ureG urease accessor 96.1 0.0047 1E-07 56.3 3.5 26 61-86 1-26 (199)
207 TIGR00150 HI0065_YjeE ATPase, 96.1 0.006 1.3E-07 52.1 3.9 26 61-86 22-47 (133)
208 PRK05506 bifunctional sulfate 96.1 0.012 2.5E-07 62.8 6.9 41 61-102 460-504 (632)
209 TIGR00455 apsK adenylylsulfate 96.1 0.0059 1.3E-07 54.4 4.0 26 60-85 17-42 (184)
210 PRK05201 hslU ATP-dependent pr 96.1 0.0073 1.6E-07 61.0 4.9 32 62-94 51-82 (443)
211 PF00448 SRP54: SRP54-type pro 96.1 0.0041 9E-08 56.5 2.9 24 62-85 2-25 (196)
212 TIGR00390 hslU ATP-dependent p 96.1 0.0062 1.3E-07 61.5 4.2 32 62-94 48-79 (441)
213 PF01583 APS_kinase: Adenylyls 96.1 0.0049 1.1E-07 54.1 3.0 40 63-103 4-47 (156)
214 PRK05537 bifunctional sulfate 96.0 0.0066 1.4E-07 63.9 4.6 39 61-101 392-436 (568)
215 PLN02748 tRNA dimethylallyltra 96.0 0.013 2.8E-07 60.1 6.4 32 63-95 24-55 (468)
216 PRK13695 putative NTPase; Prov 96.0 0.005 1.1E-07 54.4 3.0 24 62-85 1-24 (174)
217 cd00876 Ras Ras family. The R 96.0 0.0053 1.2E-07 52.0 3.0 21 63-83 1-21 (160)
218 COG3842 PotA ABC-type spermidi 96.0 0.0049 1.1E-07 60.9 3.0 21 63-83 33-53 (352)
219 PF13173 AAA_14: AAA domain 96.0 0.0088 1.9E-07 50.1 4.2 34 63-96 4-40 (128)
220 cd04163 Era Era subfamily. Er 96.0 0.0056 1.2E-07 51.8 2.9 24 61-84 3-26 (168)
221 PF04665 Pox_A32: Poxvirus A32 95.9 0.0068 1.5E-07 56.9 3.7 26 60-85 12-37 (241)
222 KOG2004|consensus 95.9 0.0069 1.5E-07 64.1 3.9 35 62-96 439-474 (906)
223 PF01926 MMR_HSR1: 50S ribosom 95.9 0.0063 1.4E-07 49.7 3.0 21 63-83 1-21 (116)
224 KOG1533|consensus 95.9 0.0035 7.6E-08 58.2 1.6 22 64-85 5-26 (290)
225 PF00910 RNA_helicase: RNA hel 95.9 0.0054 1.2E-07 50.0 2.5 23 64-86 1-23 (107)
226 cd01124 KaiC KaiC is a circadi 95.9 0.0099 2.1E-07 52.5 4.3 33 64-96 2-38 (187)
227 cd04155 Arl3 Arl3 subfamily. 95.9 0.0056 1.2E-07 53.2 2.7 25 60-84 13-37 (173)
228 CHL00181 cbbX CbbX; Provisiona 95.9 0.0077 1.7E-07 58.0 3.8 25 61-85 59-83 (287)
229 smart00173 RAS Ras subfamily o 95.9 0.0068 1.5E-07 52.0 3.1 21 63-83 2-22 (164)
230 TIGR01650 PD_CobS cobaltochela 95.9 0.0072 1.6E-07 59.1 3.6 31 61-92 64-94 (327)
231 cd01131 PilT Pilus retraction 95.8 0.007 1.5E-07 54.9 3.2 23 64-86 4-26 (198)
232 cd04119 RJL RJL (RabJ-Like) su 95.8 0.0067 1.5E-07 51.9 2.9 23 62-84 1-23 (168)
233 PHA03136 thymidine kinase; Pro 95.8 0.1 2.2E-06 51.9 11.5 52 286-340 188-239 (378)
234 smart00175 RAB Rab subfamily o 95.8 0.0072 1.6E-07 51.6 3.0 22 62-83 1-22 (164)
235 PF03668 ATP_bind_2: P-loop AT 95.8 0.16 3.4E-06 48.8 12.3 27 64-92 4-30 (284)
236 cd04138 H_N_K_Ras_like H-Ras/N 95.8 0.0073 1.6E-07 51.3 2.9 23 62-84 2-24 (162)
237 cd03115 SRP The signal recogni 95.8 0.0074 1.6E-07 53.1 3.0 22 64-85 3-24 (173)
238 PRK09087 hypothetical protein; 95.8 0.0098 2.1E-07 55.3 3.9 33 63-96 46-78 (226)
239 COG0378 HypB Ni2+-binding GTPa 95.7 0.011 2.4E-07 53.5 4.0 36 61-98 13-52 (202)
240 cd04113 Rab4 Rab4 subfamily. 95.7 0.008 1.7E-07 51.5 3.0 22 62-83 1-22 (161)
241 cd00820 PEPCK_HprK Phosphoenol 95.7 0.008 1.7E-07 49.4 2.8 20 63-82 17-36 (107)
242 TIGR00231 small_GTP small GTP- 95.7 0.0075 1.6E-07 50.2 2.7 23 62-84 2-24 (161)
243 TIGR03015 pepcterm_ATPase puta 95.7 0.0088 1.9E-07 56.2 3.5 24 63-86 45-68 (269)
244 COG3911 Predicted ATPase [Gene 95.7 0.0094 2E-07 51.8 3.3 25 60-84 8-32 (183)
245 cd00157 Rho Rho (Ras homology) 95.7 0.008 1.7E-07 51.8 2.9 23 62-84 1-23 (171)
246 cd01120 RecA-like_NTPases RecA 95.7 0.0093 2E-07 50.6 3.3 22 64-85 2-23 (165)
247 TIGR02640 gas_vesic_GvpN gas v 95.7 0.011 2.3E-07 56.1 3.9 25 62-86 22-46 (262)
248 PLN02796 D-glycerate 3-kinase 95.7 0.013 2.8E-07 57.8 4.5 36 61-96 100-139 (347)
249 cd01867 Rab8_Rab10_Rab13_like 95.7 0.0095 2.1E-07 51.7 3.3 24 60-83 2-25 (167)
250 PRK06620 hypothetical protein; 95.7 0.011 2.3E-07 54.5 3.8 29 63-92 46-74 (214)
251 TIGR02880 cbbX_cfxQ probable R 95.6 0.011 2.3E-07 56.9 3.7 24 62-85 59-82 (284)
252 PRK12724 flagellar biosynthesi 95.6 0.01 2.2E-07 60.0 3.5 37 63-99 225-265 (432)
253 cd00154 Rab Rab family. Rab G 95.6 0.011 2.3E-07 49.6 3.1 23 62-84 1-23 (159)
254 cd04136 Rap_like Rap-like subf 95.6 0.0097 2.1E-07 50.8 2.9 22 62-83 2-23 (163)
255 PRK15453 phosphoribulokinase; 95.6 0.0099 2.1E-07 57.0 3.1 34 63-96 7-44 (290)
256 TIGR01242 26Sp45 26S proteasom 95.5 0.015 3.3E-07 57.6 4.6 26 61-86 156-181 (364)
257 PHA02244 ATPase-like protein 95.5 0.013 2.9E-07 58.2 4.1 36 60-96 118-153 (383)
258 COG3839 MalK ABC-type sugar tr 95.5 0.0095 2.1E-07 58.6 3.0 30 63-96 31-60 (338)
259 PRK03992 proteasome-activating 95.5 0.014 3E-07 58.7 4.2 36 61-96 165-201 (389)
260 cd04139 RalA_RalB RalA/RalB su 95.5 0.011 2.4E-07 50.3 3.0 21 63-83 2-22 (164)
261 PF13555 AAA_29: P-loop contai 95.5 0.015 3.2E-07 43.1 3.1 22 63-84 25-46 (62)
262 PF01443 Viral_helicase1: Vira 95.4 0.01 2.2E-07 54.4 2.8 21 64-84 1-21 (234)
263 cd00544 CobU Adenosylcobinamid 95.4 0.023 5E-07 50.5 4.9 31 64-94 2-33 (169)
264 PF13479 AAA_24: AAA domain 95.4 0.014 3E-07 53.6 3.6 32 61-96 3-34 (213)
265 PRK05342 clpX ATP-dependent pr 95.4 0.018 4E-07 58.2 4.7 29 63-92 110-138 (412)
266 COG2256 MGS1 ATPase related to 95.4 0.015 3.4E-07 57.9 4.1 24 63-86 50-73 (436)
267 COG1116 TauB ABC-type nitrate/ 95.4 0.012 2.5E-07 55.2 3.0 22 62-83 30-51 (248)
268 PF00071 Ras: Ras family; Int 95.4 0.013 2.8E-07 50.2 3.1 22 63-84 1-22 (162)
269 COG1219 ClpX ATP-dependent pro 95.4 0.024 5.2E-07 55.1 5.2 49 63-115 99-147 (408)
270 cd01862 Rab7 Rab7 subfamily. 95.4 0.011 2.4E-07 50.9 2.8 23 62-84 1-23 (172)
271 COG2074 2-phosphoglycerate kin 95.4 0.016 3.6E-07 54.4 3.9 41 62-103 90-130 (299)
272 COG4619 ABC-type uncharacteriz 95.4 0.013 2.9E-07 52.1 3.1 34 59-96 27-60 (223)
273 cd04124 RabL2 RabL2 subfamily. 95.4 0.013 2.7E-07 50.7 3.0 22 62-83 1-22 (161)
274 cd01130 VirB11-like_ATPase Typ 95.4 0.015 3.2E-07 52.1 3.4 24 63-86 27-50 (186)
275 PRK08903 DnaA regulatory inact 95.4 0.015 3.2E-07 53.6 3.5 33 63-96 44-81 (227)
276 cd01860 Rab5_related Rab5-rela 95.3 0.012 2.7E-07 50.3 2.8 23 62-84 2-24 (163)
277 cd04123 Rab21 Rab21 subfamily. 95.3 0.014 3E-07 49.6 3.1 22 63-84 2-23 (162)
278 PF07724 AAA_2: AAA domain (Cd 95.3 0.016 3.4E-07 51.6 3.5 34 63-96 5-43 (171)
279 cd01865 Rab3 Rab3 subfamily. 95.3 0.012 2.7E-07 50.8 2.8 23 62-84 2-24 (165)
280 PF13191 AAA_16: AAA ATPase do 95.3 0.012 2.6E-07 51.6 2.6 24 63-86 26-49 (185)
281 cd04164 trmE TrmE (MnmE, ThdF, 95.3 0.014 3.1E-07 49.1 3.0 23 62-84 2-24 (157)
282 COG1136 SalX ABC-type antimicr 95.3 0.014 3E-07 54.3 3.1 21 62-82 32-52 (226)
283 PF00025 Arf: ADP-ribosylation 95.3 0.015 3.2E-07 51.5 3.1 25 60-84 13-37 (175)
284 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.016 3.5E-07 52.9 3.4 24 62-85 39-62 (226)
285 PF01078 Mg_chelatase: Magnesi 95.2 0.015 3.3E-07 53.2 3.2 24 63-86 24-47 (206)
286 TIGR00635 ruvB Holliday juncti 95.2 0.016 3.4E-07 55.7 3.4 24 63-86 32-55 (305)
287 COG3638 ABC-type phosphate/pho 95.2 0.021 4.5E-07 53.3 4.0 56 62-121 31-86 (258)
288 cd04145 M_R_Ras_like M-Ras/R-R 95.2 0.015 3.4E-07 49.6 2.9 23 62-84 3-25 (164)
289 COG1100 GTPase SAR1 and relate 95.2 0.014 3E-07 52.9 2.7 24 62-85 6-29 (219)
290 cd04101 RabL4 RabL4 (Rab-like4 95.2 0.016 3.6E-07 49.6 3.0 22 62-83 1-22 (164)
291 cd04135 Tc10 TC10 subfamily. 95.2 0.015 3.4E-07 50.4 2.9 23 62-84 1-23 (174)
292 cd04160 Arfrp1 Arfrp1 subfamil 95.1 0.018 3.9E-07 49.5 3.2 24 63-86 1-24 (167)
293 PRK00080 ruvB Holliday junctio 95.1 0.019 4E-07 56.2 3.6 24 63-86 53-76 (328)
294 cd04137 RheB Rheb (Ras Homolog 95.1 0.017 3.7E-07 50.6 3.0 22 62-83 2-23 (180)
295 PF06068 TIP49: TIP49 C-termin 95.1 0.054 1.2E-06 53.8 6.7 41 63-103 52-95 (398)
296 PF00437 T2SE: Type II/IV secr 95.1 0.019 4.1E-07 54.3 3.5 25 62-86 128-152 (270)
297 PRK10751 molybdopterin-guanine 95.1 0.018 3.9E-07 51.4 3.1 24 63-86 8-31 (173)
298 CHL00195 ycf46 Ycf46; Provisio 95.1 0.022 4.7E-07 59.0 4.1 35 61-96 259-295 (489)
299 PRK15455 PrkA family serine pr 95.1 0.013 2.9E-07 61.2 2.6 24 63-86 105-128 (644)
300 PTZ00454 26S protease regulato 95.1 0.025 5.4E-07 57.0 4.4 30 61-91 179-208 (398)
301 cd01861 Rab6 Rab6 subfamily. 95.0 0.017 3.7E-07 49.3 2.8 21 63-83 2-22 (161)
302 TIGR00382 clpX endopeptidase C 95.0 0.022 4.8E-07 57.6 4.0 27 63-90 118-144 (413)
303 PF00005 ABC_tran: ABC transpo 95.0 0.016 3.4E-07 48.6 2.5 25 62-86 12-36 (137)
304 cd04177 RSR1 RSR1 subgroup. R 95.0 0.018 3.9E-07 50.0 2.9 22 62-83 2-23 (168)
305 COG1125 OpuBA ABC-type proline 95.0 0.017 3.7E-07 54.6 2.8 31 62-96 28-58 (309)
306 COG2255 RuvB Holliday junction 95.0 0.026 5.7E-07 54.0 4.1 34 63-96 54-87 (332)
307 cd01918 HprK_C HprK/P, the bif 95.0 0.02 4.4E-07 49.8 3.1 31 63-96 16-46 (149)
308 COG1855 ATPase (PilT family) [ 95.0 0.016 3.5E-07 58.5 2.8 24 63-86 265-288 (604)
309 cd04127 Rab27A Rab27a subfamil 95.0 0.017 3.7E-07 50.5 2.8 22 62-83 5-26 (180)
310 cd01866 Rab2 Rab2 subfamily. 95.0 0.02 4.4E-07 49.7 3.2 25 60-84 3-27 (168)
311 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.0 0.019 4.1E-07 49.5 3.0 22 62-83 3-24 (166)
312 cd04106 Rab23_lke Rab23-like s 95.0 0.018 3.8E-07 49.2 2.8 23 62-84 1-23 (162)
313 cd04156 ARLTS1 ARLTS1 subfamil 95.0 0.018 4E-07 49.1 2.8 22 63-84 1-22 (160)
314 cd01870 RhoA_like RhoA-like su 95.0 0.019 4.1E-07 49.9 2.9 23 62-84 2-24 (175)
315 cd01863 Rab18 Rab18 subfamily. 95.0 0.02 4.4E-07 48.9 3.1 23 62-84 1-23 (161)
316 PF03205 MobB: Molybdopterin g 95.0 0.019 4.1E-07 49.4 2.8 23 63-85 2-24 (140)
317 TIGR02528 EutP ethanolamine ut 95.0 0.017 3.7E-07 48.5 2.5 23 63-85 2-24 (142)
318 TIGR01618 phage_P_loop phage n 95.0 0.017 3.7E-07 53.5 2.7 31 61-94 12-42 (220)
319 COG0464 SpoVK ATPases of the A 95.0 0.03 6.5E-07 57.8 4.8 51 62-115 277-328 (494)
320 cd01895 EngA2 EngA2 subfamily. 94.9 0.019 4.1E-07 49.1 2.8 24 61-84 2-25 (174)
321 KOG0651|consensus 94.9 0.041 9E-07 53.3 5.2 50 63-115 167-218 (388)
322 cd03116 MobB Molybdenum is an 94.9 0.021 4.5E-07 50.2 3.0 24 63-86 3-26 (159)
323 TIGR03689 pup_AAA proteasome A 94.9 0.022 4.7E-07 59.2 3.5 26 61-86 216-241 (512)
324 TIGR00176 mobB molybdopterin-g 94.9 0.021 4.6E-07 49.9 3.0 22 64-85 2-23 (155)
325 PF06745 KaiC: KaiC; InterPro 94.9 0.04 8.6E-07 50.6 5.0 57 63-120 21-83 (226)
326 cd01864 Rab19 Rab19 subfamily. 94.9 0.02 4.4E-07 49.4 2.9 23 61-83 3-25 (165)
327 cd01868 Rab11_like Rab11-like. 94.9 0.019 4.2E-07 49.3 2.7 23 62-84 4-26 (165)
328 cd03292 ABC_FtsE_transporter F 94.9 0.022 4.7E-07 51.8 3.2 24 62-85 28-51 (214)
329 TIGR00960 3a0501s02 Type II (G 94.9 0.022 4.7E-07 52.0 3.1 24 62-85 30-53 (216)
330 cd04132 Rho4_like Rho4-like su 94.9 0.021 4.6E-07 50.4 2.9 23 62-84 1-23 (187)
331 PF13086 AAA_11: AAA domain; P 94.9 0.024 5.3E-07 51.1 3.4 22 64-85 20-41 (236)
332 PF03215 Rad17: Rad17 cell cyc 94.9 0.026 5.7E-07 58.7 4.0 24 63-86 47-70 (519)
333 cd02034 CooC The accessory pro 94.9 0.024 5.3E-07 47.1 3.1 23 63-85 1-23 (116)
334 PRK10416 signal recognition pa 94.9 0.02 4.4E-07 56.0 3.0 24 62-85 115-138 (318)
335 cd01128 rho_factor Transcripti 94.8 0.026 5.5E-07 53.3 3.6 31 56-86 11-41 (249)
336 cd00879 Sar1 Sar1 subfamily. 94.8 0.022 4.8E-07 50.4 3.0 23 61-83 19-41 (190)
337 cd04115 Rab33B_Rab33A Rab33B/R 94.8 0.022 4.8E-07 49.5 3.0 22 62-83 3-24 (170)
338 PF07726 AAA_3: ATPase family 94.8 0.017 3.7E-07 49.1 2.0 23 64-86 2-24 (131)
339 TIGR01166 cbiO cobalt transpor 94.8 0.024 5.1E-07 50.7 3.1 24 62-85 19-42 (190)
340 cd04110 Rab35 Rab35 subfamily. 94.8 0.021 4.5E-07 51.4 2.8 23 61-83 6-28 (199)
341 cd04159 Arl10_like Arl10-like 94.8 0.022 4.8E-07 47.8 2.8 21 64-84 2-22 (159)
342 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.8 0.024 5.1E-07 51.7 3.1 24 62-85 31-54 (218)
343 cd04107 Rab32_Rab38 Rab38/Rab3 94.8 0.023 5E-07 51.1 3.1 23 62-84 1-23 (201)
344 cd00878 Arf_Arl Arf (ADP-ribos 94.8 0.022 4.8E-07 48.6 2.8 22 63-84 1-22 (158)
345 cd03219 ABC_Mj1267_LivG_branch 94.8 0.022 4.8E-07 52.6 3.0 24 62-85 27-50 (236)
346 KOG0739|consensus 94.8 0.034 7.3E-07 53.7 4.1 51 64-114 169-220 (439)
347 cd04114 Rab30 Rab30 subfamily. 94.8 0.023 5.1E-07 48.9 2.9 23 61-83 7-29 (169)
348 PRK13768 GTPase; Provisional 94.8 0.022 4.9E-07 53.7 3.0 24 62-85 3-26 (253)
349 PRK06526 transposase; Provisio 94.8 0.033 7.1E-07 52.7 4.1 23 62-84 99-121 (254)
350 COG1120 FepC ABC-type cobalami 94.7 0.023 5E-07 53.8 3.0 23 63-85 30-52 (258)
351 cd01983 Fer4_NifH The Fer4_Nif 94.7 0.027 6E-07 43.3 3.0 22 64-85 2-23 (99)
352 cd02029 PRK_like Phosphoribulo 94.7 0.023 5.1E-07 54.1 3.0 33 64-96 2-38 (277)
353 cd04154 Arl2 Arl2 subfamily. 94.7 0.027 5.8E-07 49.2 3.2 24 61-84 14-37 (173)
354 cd03264 ABC_drug_resistance_li 94.7 0.025 5.4E-07 51.3 3.1 23 63-85 27-49 (211)
355 TIGR00064 ftsY signal recognit 94.7 0.023 5.1E-07 54.3 3.0 24 62-85 73-96 (272)
356 cd04116 Rab9 Rab9 subfamily. 94.7 0.024 5.3E-07 49.0 2.9 23 61-83 5-27 (170)
357 PTZ00132 GTP-binding nuclear p 94.7 0.026 5.5E-07 51.4 3.1 22 61-82 9-30 (215)
358 PRK13541 cytochrome c biogenes 94.7 0.027 5.8E-07 50.7 3.2 24 62-85 27-50 (195)
359 cd04129 Rho2 Rho2 subfamily. 94.7 0.025 5.5E-07 50.2 3.0 21 62-82 2-22 (187)
360 TIGR03598 GTPase_YsxC ribosome 94.7 0.026 5.7E-07 49.7 3.1 26 59-84 16-41 (179)
361 PF01712 dNK: Deoxynucleoside 94.7 0.03 6.4E-07 48.4 3.3 65 284-353 61-128 (146)
362 PRK12402 replication factor C 94.7 0.026 5.6E-07 54.7 3.2 23 63-85 38-60 (337)
363 TIGR01241 FtsH_fam ATP-depende 94.7 0.036 7.7E-07 57.4 4.4 30 62-92 89-118 (495)
364 PRK06893 DNA replication initi 94.7 0.025 5.4E-07 52.5 3.0 23 63-85 41-63 (229)
365 cd03238 ABC_UvrA The excision 94.6 0.028 6.2E-07 50.2 3.2 23 61-83 21-43 (176)
366 PRK13342 recombination factor 94.6 0.03 6.6E-07 56.6 3.8 24 63-86 38-61 (413)
367 cd04146 RERG_RasL11_like RERG/ 94.6 0.028 6.1E-07 48.4 3.1 21 63-83 1-21 (165)
368 TIGR02673 FtsE cell division A 94.6 0.027 5.9E-07 51.1 3.2 24 62-85 29-52 (214)
369 cd04175 Rap1 Rap1 subgroup. T 94.6 0.027 5.9E-07 48.4 3.0 22 62-83 2-23 (164)
370 cd03225 ABC_cobalt_CbiO_domain 94.6 0.027 5.9E-07 51.0 3.1 24 62-85 28-51 (211)
371 PRK08533 flagellar accessory p 94.6 0.041 9E-07 51.2 4.4 56 63-118 26-85 (230)
372 cd04118 Rab24 Rab24 subfamily. 94.6 0.027 5.8E-07 50.0 3.0 23 62-84 1-23 (193)
373 PRK13851 type IV secretion sys 94.6 0.025 5.5E-07 55.9 3.0 25 62-86 163-187 (344)
374 PRK14974 cell division protein 94.6 0.025 5.4E-07 55.7 3.0 25 61-85 140-164 (336)
375 cd03222 ABC_RNaseL_inhibitor T 94.6 0.027 5.9E-07 50.4 2.9 25 61-85 25-49 (177)
376 cd03224 ABC_TM1139_LivF_branch 94.6 0.027 5.9E-07 51.4 3.0 24 62-85 27-50 (222)
377 KOG2702|consensus 94.6 0.062 1.3E-06 50.1 5.3 36 282-317 251-286 (323)
378 cd04122 Rab14 Rab14 subfamily. 94.6 0.026 5.6E-07 48.8 2.7 23 62-84 3-25 (166)
379 cd04104 p47_IIGP_like p47 (47- 94.6 0.028 6.1E-07 50.7 3.1 24 61-84 1-24 (197)
380 cd01876 YihA_EngB The YihA (En 94.6 0.029 6.2E-07 47.5 3.0 21 63-83 1-21 (170)
381 cd01878 HflX HflX subfamily. 94.6 0.028 6E-07 50.5 3.0 23 62-84 42-64 (204)
382 cd03263 ABC_subfamily_A The AB 94.6 0.029 6.3E-07 51.2 3.2 23 63-85 30-52 (220)
383 cd03301 ABC_MalK_N The N-termi 94.6 0.03 6.4E-07 50.9 3.2 24 62-85 27-50 (213)
384 cd03261 ABC_Org_Solvent_Resist 94.6 0.029 6.3E-07 51.9 3.2 24 62-85 27-50 (235)
385 cd03262 ABC_HisP_GlnQ_permease 94.6 0.03 6.5E-07 50.8 3.2 24 62-85 27-50 (213)
386 PRK08084 DNA replication initi 94.6 0.031 6.8E-07 52.1 3.4 23 63-85 47-69 (235)
387 cd03226 ABC_cobalt_CbiO_domain 94.6 0.029 6.3E-07 50.7 3.1 24 62-85 27-50 (205)
388 PRK14722 flhF flagellar biosyn 94.5 0.026 5.7E-07 56.3 3.0 22 63-84 139-160 (374)
389 COG0529 CysC Adenylylsulfate k 94.5 0.03 6.5E-07 50.1 3.0 41 61-102 23-67 (197)
390 TIGR02211 LolD_lipo_ex lipopro 94.5 0.03 6.4E-07 51.2 3.2 24 62-85 32-55 (221)
391 PRK11629 lolD lipoprotein tran 94.5 0.029 6.4E-07 51.8 3.2 24 62-85 36-59 (233)
392 TIGR03608 L_ocin_972_ABC putat 94.5 0.03 6.4E-07 50.5 3.1 24 62-85 25-48 (206)
393 TIGR03499 FlhF flagellar biosy 94.5 0.027 5.8E-07 54.1 3.0 24 62-85 195-218 (282)
394 PRK04195 replication factor C 94.5 0.035 7.6E-07 57.3 4.0 34 63-96 41-75 (482)
395 cd03223 ABCD_peroxisomal_ALDP 94.5 0.032 7E-07 49.0 3.2 24 62-85 28-51 (166)
396 cd03258 ABC_MetN_methionine_tr 94.5 0.031 6.7E-07 51.6 3.2 24 62-85 32-55 (233)
397 cd03218 ABC_YhbG The ABC trans 94.5 0.031 6.7E-07 51.4 3.2 24 62-85 27-50 (232)
398 smart00178 SAR Sar1p-like memb 94.5 0.033 7.2E-07 49.4 3.3 23 61-83 17-39 (184)
399 cd04150 Arf1_5_like Arf1-Arf5- 94.5 0.03 6.5E-07 48.4 2.9 21 62-82 1-21 (159)
400 cd03259 ABC_Carb_Solutes_like 94.5 0.032 6.9E-07 50.7 3.2 24 62-85 27-50 (213)
401 cd00877 Ran Ran (Ras-related n 94.5 0.03 6.6E-07 48.7 2.9 21 63-83 2-22 (166)
402 cd04117 Rab15 Rab15 subfamily. 94.5 0.029 6.3E-07 48.5 2.7 21 63-83 2-22 (161)
403 PLN03046 D-glycerate 3-kinase; 94.5 0.047 1E-06 55.2 4.5 36 62-97 213-252 (460)
404 PRK13540 cytochrome c biogenes 94.5 0.033 7.1E-07 50.3 3.2 25 61-85 27-51 (200)
405 PTZ00361 26 proteosome regulat 94.5 0.042 9E-07 56.1 4.2 35 62-96 218-253 (438)
406 cd03269 ABC_putative_ATPase Th 94.4 0.033 7.1E-07 50.5 3.2 24 62-85 27-50 (210)
407 TIGR01978 sufC FeS assembly AT 94.4 0.031 6.8E-07 51.8 3.1 23 62-84 27-49 (243)
408 PRK00454 engB GTP-binding prot 94.4 0.037 8E-07 49.0 3.4 25 60-84 23-47 (196)
409 PRK11701 phnK phosphonate C-P 94.4 0.031 6.8E-07 52.5 3.1 25 61-85 32-56 (258)
410 PF01695 IstB_IS21: IstB-like 94.4 0.029 6.3E-07 50.1 2.7 36 62-98 48-88 (178)
411 PLN03108 Rab family protein; P 94.4 0.035 7.5E-07 50.6 3.3 25 60-84 5-29 (210)
412 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.032 6.8E-07 51.1 3.0 24 62-85 31-54 (220)
413 TIGR02315 ABC_phnC phosphonate 94.4 0.033 7.1E-07 51.7 3.2 24 62-85 29-52 (243)
414 cd03260 ABC_PstB_phosphate_tra 94.4 0.033 7.2E-07 51.1 3.2 24 62-85 27-50 (227)
415 cd03229 ABC_Class3 This class 94.4 0.035 7.5E-07 49.2 3.2 24 62-85 27-50 (178)
416 KOG1969|consensus 94.4 0.043 9.3E-07 58.4 4.3 40 57-96 320-362 (877)
417 cd03257 ABC_NikE_OppD_transpor 94.4 0.032 7E-07 51.1 3.1 24 62-85 32-55 (228)
418 TIGR02323 CP_lyasePhnK phospho 94.4 0.032 7E-07 52.1 3.1 24 62-85 30-53 (253)
419 cd03256 ABC_PhnC_transporter A 94.4 0.034 7.3E-07 51.5 3.2 24 62-85 28-51 (241)
420 cd03283 ABC_MutS-like MutS-lik 94.4 0.033 7.2E-07 50.6 3.0 22 62-83 26-47 (199)
421 PRK14242 phosphate transporter 94.4 0.033 7.1E-07 52.1 3.1 23 62-84 33-55 (253)
422 cd03265 ABC_DrrA DrrA is the A 94.4 0.035 7.5E-07 50.8 3.2 24 62-85 27-50 (220)
423 cd03235 ABC_Metallic_Cations A 94.4 0.031 6.7E-07 50.8 2.9 24 62-85 26-49 (213)
424 cd03214 ABC_Iron-Siderophores_ 94.4 0.035 7.7E-07 49.2 3.2 24 62-85 26-49 (180)
425 cd03114 ArgK-like The function 94.4 0.034 7.5E-07 48.1 3.0 22 64-85 2-23 (148)
426 cd03296 ABC_CysA_sulfate_impor 94.4 0.034 7.4E-07 51.6 3.2 24 62-85 29-52 (239)
427 cd04134 Rho3 Rho3 subfamily. 94.4 0.031 6.7E-07 49.8 2.8 23 62-84 1-23 (189)
428 COG1122 CbiO ABC-type cobalt t 94.4 0.031 6.7E-07 52.3 2.8 22 62-83 31-52 (235)
429 KOG0991|consensus 94.3 0.032 7E-07 52.1 2.9 26 60-85 47-72 (333)
430 TIGR01243 CDC48 AAA family ATP 94.3 0.057 1.2E-06 58.6 5.3 35 62-96 488-523 (733)
431 TIGR02782 TrbB_P P-type conjug 94.3 0.034 7.4E-07 53.9 3.2 24 63-86 134-157 (299)
432 PRK14962 DNA polymerase III su 94.3 0.035 7.5E-07 57.2 3.4 24 63-86 38-61 (472)
433 cd01897 NOG NOG1 is a nucleola 94.3 0.032 7E-07 48.0 2.7 22 63-84 2-23 (168)
434 cd03215 ABC_Carb_Monos_II This 94.3 0.036 7.7E-07 49.3 3.0 24 62-85 27-50 (182)
435 PLN03118 Rab family protein; P 94.3 0.038 8.3E-07 50.1 3.3 25 60-84 13-37 (211)
436 TIGR03410 urea_trans_UrtE urea 94.3 0.035 7.6E-07 51.1 3.1 24 62-85 27-50 (230)
437 cd03247 ABCC_cytochrome_bd The 94.3 0.038 8.1E-07 48.9 3.2 24 62-85 29-52 (178)
438 TIGR03005 ectoine_ehuA ectoine 94.3 0.035 7.6E-07 51.9 3.1 24 62-85 27-50 (252)
439 cd04158 ARD1 ARD1 subfamily. 94.3 0.036 7.9E-07 48.3 3.0 22 63-84 1-22 (169)
440 PRK14250 phosphate ABC transpo 94.3 0.037 7.9E-07 51.5 3.2 24 62-85 30-53 (241)
441 TIGR00073 hypB hydrogenase acc 94.3 0.037 8E-07 50.4 3.1 26 61-86 22-47 (207)
442 TIGR01420 pilT_fam pilus retra 94.3 0.037 8E-07 54.6 3.4 24 63-86 124-147 (343)
443 cd03234 ABCG_White The White s 94.3 0.036 7.8E-07 51.0 3.1 24 62-85 34-57 (226)
444 PRK11264 putative amino-acid A 94.3 0.037 8E-07 51.6 3.2 24 62-85 30-53 (250)
445 cd03232 ABC_PDR_domain2 The pl 94.3 0.036 7.8E-07 49.8 3.0 23 62-84 34-56 (192)
446 PRK10463 hydrogenase nickel in 94.3 0.038 8.3E-07 53.3 3.3 23 63-85 106-128 (290)
447 PTZ00369 Ras-like protein; Pro 94.3 0.035 7.6E-07 49.4 2.9 23 62-84 6-28 (189)
448 PRK09435 membrane ATPase/prote 94.3 0.034 7.3E-07 54.7 3.0 24 62-85 57-80 (332)
449 KOG4235|consensus 94.3 0.39 8.4E-06 43.8 9.4 64 288-356 152-221 (244)
450 TIGR03864 PQQ_ABC_ATP ABC tran 94.2 0.037 8.1E-07 51.2 3.2 24 62-85 28-51 (236)
451 PF02367 UPF0079: Uncharacteri 94.2 0.047 1E-06 46.0 3.4 26 61-86 15-40 (123)
452 PRK12608 transcription termina 94.2 0.044 9.5E-07 54.6 3.8 30 56-85 128-157 (380)
453 PRK13900 type IV secretion sys 94.2 0.04 8.6E-07 54.2 3.5 25 62-86 161-185 (332)
454 cd03230 ABC_DR_subfamily_A Thi 94.2 0.04 8.6E-07 48.6 3.1 24 62-85 27-50 (173)
455 PLN03025 replication factor C 94.2 0.036 7.8E-07 54.0 3.1 23 63-85 36-58 (319)
456 COG1118 CysA ABC-type sulfate/ 94.2 0.035 7.5E-07 53.7 2.9 22 62-83 29-50 (345)
457 PRK11331 5-methylcytosine-spec 94.2 0.037 8E-07 56.5 3.2 25 62-86 195-219 (459)
458 PRK10895 lipopolysaccharide AB 94.2 0.038 8.3E-07 51.3 3.2 24 62-85 30-53 (241)
459 cd04130 Wrch_1 Wrch-1 subfamil 94.2 0.038 8.3E-07 48.2 3.0 22 62-83 1-22 (173)
460 PRK04296 thymidine kinase; Pro 94.2 0.035 7.5E-07 50.1 2.7 22 64-85 5-26 (190)
461 PRK10908 cell division protein 94.2 0.04 8.6E-07 50.5 3.2 24 62-85 29-52 (222)
462 TIGR02770 nickel_nikD nickel i 94.2 0.038 8.3E-07 51.0 3.1 24 62-85 13-36 (230)
463 cd03246 ABCC_Protease_Secretio 94.2 0.042 9.2E-07 48.4 3.2 24 62-85 29-52 (173)
464 PRK13833 conjugal transfer pro 94.2 0.039 8.4E-07 54.1 3.2 23 63-85 146-168 (323)
465 cd03297 ABC_ModC_molybdenum_tr 94.2 0.039 8.4E-07 50.3 3.0 24 62-85 24-47 (214)
466 PRK11248 tauB taurine transpor 94.2 0.04 8.6E-07 51.9 3.2 24 62-85 28-51 (255)
467 cd04103 Centaurin_gamma Centau 94.2 0.042 9.1E-07 47.7 3.1 22 62-83 1-22 (158)
468 cd03228 ABCC_MRP_Like The MRP 94.2 0.041 8.9E-07 48.4 3.1 24 62-85 29-52 (171)
469 cd03216 ABC_Carb_Monos_I This 94.1 0.042 9.1E-07 48.1 3.1 24 62-85 27-50 (163)
470 PRK10771 thiQ thiamine transpo 94.1 0.039 8.5E-07 50.9 3.1 24 62-85 26-49 (232)
471 KOG3308|consensus 94.1 0.059 1.3E-06 49.1 4.1 34 64-97 7-40 (225)
472 cd03237 ABC_RNaseL_inhibitor_d 94.1 0.042 9.2E-07 51.6 3.3 24 62-85 26-49 (246)
473 TIGR02524 dot_icm_DotB Dot/Icm 94.1 0.039 8.5E-07 54.8 3.2 23 63-85 136-158 (358)
474 COG2884 FtsE Predicted ATPase 94.1 0.041 8.9E-07 49.9 3.0 23 63-85 30-52 (223)
475 PRK09183 transposase/IS protei 94.1 0.038 8.2E-07 52.4 3.0 23 62-84 103-125 (259)
476 PRK10247 putative ABC transpor 94.1 0.042 9.1E-07 50.6 3.2 23 62-84 34-56 (225)
477 PRK15056 manganese/iron transp 94.1 0.04 8.6E-07 52.4 3.1 24 62-85 34-57 (272)
478 PRK08181 transposase; Validate 94.1 0.034 7.4E-07 53.1 2.6 35 63-98 108-147 (269)
479 PRK14241 phosphate transporter 94.1 0.04 8.7E-07 51.8 3.1 24 62-85 31-54 (258)
480 cd03251 ABCC_MsbA MsbA is an e 94.1 0.042 9.1E-07 50.7 3.2 24 62-85 29-52 (234)
481 TIGR03771 anch_rpt_ABC anchore 94.1 0.044 9.5E-07 50.4 3.3 25 61-85 6-30 (223)
482 cd03268 ABC_BcrA_bacitracin_re 94.1 0.043 9.2E-07 49.7 3.1 24 62-85 27-50 (208)
483 cd04140 ARHI_like ARHI subfami 94.1 0.04 8.7E-07 47.6 2.9 22 62-83 2-23 (165)
484 COG0396 sufC Cysteine desulfur 94.1 0.044 9.6E-07 51.0 3.2 32 63-96 32-63 (251)
485 PRK09493 glnQ glutamine ABC tr 94.1 0.043 9.3E-07 50.9 3.2 24 62-85 28-51 (240)
486 PRK14247 phosphate ABC transpo 94.1 0.042 9.2E-07 51.3 3.1 24 62-85 30-53 (250)
487 PRK14255 phosphate ABC transpo 94.1 0.043 9.2E-07 51.3 3.2 23 62-84 32-54 (252)
488 PRK11124 artP arginine transpo 94.1 0.044 9.4E-07 50.9 3.2 24 62-85 29-52 (242)
489 cd03266 ABC_NatA_sodium_export 94.1 0.044 9.5E-07 50.0 3.2 24 62-85 32-55 (218)
490 PRK14961 DNA polymerase III su 94.1 0.043 9.3E-07 54.5 3.3 23 64-86 41-63 (363)
491 PRK15177 Vi polysaccharide exp 94.0 0.041 9E-07 50.3 3.0 23 62-84 14-36 (213)
492 cd03250 ABCC_MRP_domain1 Domai 94.0 0.044 9.6E-07 49.5 3.2 24 62-85 32-55 (204)
493 PRK10744 pstB phosphate transp 94.0 0.043 9.3E-07 51.7 3.1 24 62-85 40-63 (260)
494 PRK14235 phosphate transporter 94.0 0.044 9.6E-07 51.9 3.2 24 62-85 46-69 (267)
495 cd04125 RabA_like RabA-like su 94.0 0.044 9.5E-07 48.6 3.0 22 62-83 1-22 (188)
496 PRK13538 cytochrome c biogenes 94.0 0.044 9.6E-07 49.6 3.1 24 62-85 28-51 (204)
497 cd03233 ABC_PDR_domain1 The pl 94.0 0.038 8.2E-07 50.1 2.7 24 62-85 34-57 (202)
498 cd03254 ABCC_Glucan_exporter_l 94.0 0.044 9.6E-07 50.3 3.2 23 63-85 31-53 (229)
499 cd03298 ABC_ThiQ_thiamine_tran 94.0 0.045 9.8E-07 49.7 3.1 24 62-85 25-48 (211)
500 PRK14240 phosphate transporter 94.0 0.044 9.6E-07 51.1 3.2 23 62-84 30-52 (250)
No 1
>KOG3079|consensus
Probab=100.00 E-value=5e-34 Score=250.54 Aligned_cols=172 Identities=35% Similarity=0.648 Sum_probs=151.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc-cCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT-GNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~-~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
-|+++|+|||||+|||++|+++|+ +.|||+|||||+++.. +++.|+.+++++.+|.++|.+.. +.-+
T Consensus 10 IifVlGGPGsgKgTqC~kiv~ky~-ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~-----------~~LL 77 (195)
T KOG3079|consen 10 IIFVLGGPGSGKGTQCEKIVEKYG-FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEIT-----------LSLL 77 (195)
T ss_pred EEEEEcCCCCCcchHHHHHHHHcC-ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHH-----------HHHH
Confidence 477899999999999999999998 9999999999999988 89999999999999999998773 2222
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
.+.+...
T Consensus 78 ~~am~~~------------------------------------------------------------------------- 84 (195)
T KOG3079|consen 78 EEAMRSS------------------------------------------------------------------------- 84 (195)
T ss_pred HHHHHhc-------------------------------------------------------------------------
Confidence 2222210
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCC-CCCEEEEEeCCH
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTK-EPAIILYLDAPD 300 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~-~~d~vi~L~~~d 300 (363)
.+..++++|||||+.+|+..|++... .+++++++||+.
T Consensus 85 -----------------------------------------~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~e 123 (195)
T KOG3079|consen 85 -----------------------------------------GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPE 123 (195)
T ss_pred -----------------------------------------CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCH
Confidence 01234999999999999999999987 699999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhh--cceeecCccccccccc
Q psy11897 301 DVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKS--HIAKVNFLHKRRESVK 360 (363)
Q Consensus 301 e~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~--~~~~v~~~~~~~~~~~ 360 (363)
+++++||+.|...+.|.||+.+.+++|++.|++.+.|+++||.+ ++.+||++.+.+++..
T Consensus 124 e~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~ 185 (195)
T KOG3079|consen 124 ETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFE 185 (195)
T ss_pred HHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHH
Confidence 99999999999987899999999999999999999999999999 5889999999988754
No 2
>PLN02674 adenylate kinase
Probab=99.98 E-value=4.5e-32 Score=253.04 Aligned_cols=175 Identities=26% Similarity=0.402 Sum_probs=151.2
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
.++|+|+|||||||||||++|+++|+ +.|||+|+++|+++..++.+|..+.+++..|++++++.. ..-
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~-~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv-----------~~l 98 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV-----------VGI 98 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC-CcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHH-----------HHH
Confidence 35799999999999999999999997 999999999999999999999999999999999998773 344
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+.+++...
T Consensus 99 v~~~l~~~------------------------------------------------------------------------ 106 (244)
T PLN02674 99 IDEAMKKP------------------------------------------------------------------------ 106 (244)
T ss_pred HHHHHhCc------------------------------------------------------------------------
Confidence 45555420
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcC----CCCCEEEEE
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDT----KEPAIILYL 296 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~----~~~d~vi~L 296 (363)
....+||+||||||.+||+.|++.+ ..+|.||+|
T Consensus 107 ------------------------------------------~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l 144 (244)
T PLN02674 107 ------------------------------------------SCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNF 144 (244)
T ss_pred ------------------------------------------CcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 0123599999999999999887653 479999999
Q ss_pred eCCHHHHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ce
Q psy11897 297 DAPDDVILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IA 347 (363)
Q Consensus 297 ~~~de~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~ 347 (363)
++|++++.+||.+|+.+ .+|.||++|.+++||+.|++++.|+++||+++ ++
T Consensus 145 ~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~ 224 (244)
T PLN02674 145 AIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVA 224 (244)
T ss_pred ECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEE
Confidence 99999999999999642 24899999999999999999999999999986 88
Q ss_pred eecCcccccccccC
Q psy11897 348 KVNFLHKRRESVKS 361 (363)
Q Consensus 348 ~v~~~~~~~~~~~~ 361 (363)
.||++.+.+++..+
T Consensus 225 ~Ida~~~~~eV~~~ 238 (244)
T PLN02674 225 NLHAEKPPKEVTAE 238 (244)
T ss_pred EEECCCCHHHHHHH
Confidence 99999999887653
No 3
>PLN02459 probable adenylate kinase
Probab=99.97 E-value=4.3e-31 Score=247.76 Aligned_cols=176 Identities=27% Similarity=0.465 Sum_probs=152.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
+++|+|+|||||||||||++|+++|+ +.|||+|+++|.++..++++|..+++++.+|.+++++.. +.-
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~-~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv-----------~~l 96 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLG-VPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEII-----------FSL 96 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC-CcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHH-----------HHH
Confidence 35799999999999999999999997 999999999999999999999999999999999998873 344
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+.++|....
T Consensus 97 l~~~l~~~~----------------------------------------------------------------------- 105 (261)
T PLN02459 97 LSKRLEAGE----------------------------------------------------------------------- 105 (261)
T ss_pred HHHHHhccc-----------------------------------------------------------------------
Confidence 455554310
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCH
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPD 300 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~d 300 (363)
.....+||+||||||.+||+.|++.. .++.||+|++|+
T Consensus 106 -----------------------------------------~~~~~g~iLDGFPRt~~Qa~~Le~~~-~id~Vi~L~v~d 143 (261)
T PLN02459 106 -----------------------------------------EEGESGFILDGFPRTVRQAEILEGVT-DIDLVVNLKLRE 143 (261)
T ss_pred -----------------------------------------ccCCceEEEeCCCCCHHHHHHHHhcC-CCCEEEEEECCH
Confidence 01234699999999999999998764 689999999999
Q ss_pred HHHHHHHhhcCCC--------------------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHh
Q psy11897 301 DVILARLVKRGLT--------------------------------------SGRPDDKEDAIKKRLIKANENDGPILQAF 342 (363)
Q Consensus 301 e~l~~Rl~~R~~~--------------------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~ 342 (363)
+++++||.+|+.+ .+|.||++|.+++||+.|++++.|+++||
T Consensus 144 ~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y 223 (261)
T PLN02459 144 EVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFY 223 (261)
T ss_pred HHHHHHhhccccccccCccccccccccccccccccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999631 26899999999999999999999999999
Q ss_pred hhc--ceeecCcccccccccC
Q psy11897 343 KSH--IAKVNFLHKRRESVKS 361 (363)
Q Consensus 343 ~~~--~~~v~~~~~~~~~~~~ 361 (363)
+++ ++.||+..+.+++.++
T Consensus 224 ~~~g~l~~id~~~~~~eV~~~ 244 (261)
T PLN02459 224 RKRGKLLEFELPGGIPETWPR 244 (261)
T ss_pred HhcCCeEEEeCCCCHHHHHHH
Confidence 987 7889999988887653
No 4
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.97 E-value=2e-31 Score=261.05 Aligned_cols=184 Identities=38% Similarity=0.608 Sum_probs=156.8
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHH---hC-------CccccccccCCCCCCCccchhhhhhhhcCCeEEECCeeE
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMK---QG-------GLVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENF 157 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~---~g-------~~~~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y 157 (363)
.+.|+.+.-+++.|.. .|+.+.++.. +| ++...+.|.. ++.|+|++++|++|||++|+|+++|++|
T Consensus 11 ~~tl~n~~g~~v~i~~---~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~-~~~~~Ga~iGr~anRI~~g~f~~~G~~y 86 (342)
T PRK11055 11 LLTLRNNAGMVVTLMD---WGATWLSCRVPLSDGSVREVLLGCASPEDYPD-QAAYLGASVGRYANRIANSRFTLDGETY 86 (342)
T ss_pred EEEEECCCCeEEEEeC---cCcEEEEEEeECCCCCEeeeEECCCCHHHHhh-CCCccCceeCCcCCcccCCEEEECCEEE
Confidence 4556555445777776 6776666653 34 2345566743 4689999999999999999999999999
Q ss_pred EeecCCCCCccCCCCcCccccceEee-eeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEeCCCeeecc
Q psy11897 158 TISQNVDVNHLHGGFKGFDKVIWSTY-VDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINL 236 (363)
Q Consensus 158 ~L~~n~~~~~lHG~~~g~~~~~w~~~-~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~~~~p~~l 236 (363)
+|+.|+++|+||||.+||+++.|++. ..+++|+|++.++++++||||++.++|+|+|+++++|.|++++++++++|+|+
T Consensus 87 ~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~~d~~tp~nl 166 (342)
T PRK11055 87 QLSPNQGGNQLHGGPEGFDKRRWQIVNQNDRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRATVDKPCPVNL 166 (342)
T ss_pred EcccCCCCcccCCCCcccCCcEEEEEEccCCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEEEcCCCeEEec
Confidence 99999999999999999999999964 45689999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcccccccceEEEEeecceeeecc-CCCCC
Q psy11897 237 TNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 237 ~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
|+|+||||+|+. ...++.+|.|+++++.++.+++ .+|..
T Consensus 167 t~H~YFnL~g~~-~~~~i~~h~L~i~a~~~~~~d~~~iPTG 206 (342)
T PRK11055 167 TNHAYFNLDGAE-EGSDVRNHKLQINADEYLPVDEGGIPNG 206 (342)
T ss_pred cccceEECCCCC-CCCCccceEEEEecCCEEEECcccCccC
Confidence 999999998741 2357899999999999999985 78875
No 5
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.97 E-value=6.2e-31 Score=257.26 Aligned_cols=184 Identities=39% Similarity=0.590 Sum_probs=155.0
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHH----hC-----CccccccccCCCCCCCccchhhhhhhhcCCeEEECCeeEE
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMK----QG-----GLVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFT 158 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~----~g-----~~~~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~ 158 (363)
++.|+++.-+++.|.. .|+.+.++.. .+ ++...+.|. .++.|+|++++|++|||++|+|.++|++|+
T Consensus 6 ~~~l~n~~g~~v~i~~---~GA~i~~l~~pd~~~~~~vvlg~~~~~~y~-~~~~~~Ga~igp~anRI~~g~f~~~G~~y~ 81 (335)
T TIGR02636 6 LITLTNNNGMTISFMD---IGATWLSCQVPLAGELREVLLGFASMEEYY-KQDAYLGATVGRYANRIANGSFEIDGETYQ 81 (335)
T ss_pred EEEEECCCCcEEEEeC---cCcEEEEEEeeCCCCccceEECCCCHHHHh-hCCCccCCCcCCCCceecCCEEEECCEEEE
Confidence 4556655545777776 6666655542 11 344456664 357899999999999999999999999999
Q ss_pred eecCCCCCccCCCCcCccccceEee--eeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEeCCCeeecc
Q psy11897 159 ISQNVDVNHLHGGFKGFDKVIWSTY--VDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINL 236 (363)
Q Consensus 159 L~~n~~~~~lHG~~~g~~~~~w~~~--~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~~~~p~~l 236 (363)
|++|+++|+||||.+||+++.|++. ..+++|+|++.++++++||||++.++++|+|+++++|.|+++++++++||+|+
T Consensus 82 L~~N~~~n~lHGg~~G~~~~~W~v~~~~~~~~v~l~~~~~~~~~gyPg~l~~~vtY~L~~~~~L~i~~~a~~d~~tp~nl 161 (335)
T TIGR02636 82 LSINQGGNCLHGGPEGFDKRRWNIEELQEEVQVKFSLESPDGDQGFPGNLTVSVTYTLTDDNELTIEYEATTDKATPFNL 161 (335)
T ss_pred eccCCCCcccCCCCccccccEEeEeeecCCCEEEEEEECCCcCCCCCeEEEEEEEEEECCCCEEEEEEEEEECCceEEec
Confidence 9999999999999999999999964 45679999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcccccccceEEEEeecceeeecc-CCCCC
Q psy11897 237 TNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 237 ~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
|+|+||||+|.. ...++.+|.|++++++++.+++ ..|..
T Consensus 162 t~H~YFnL~g~~-~~~~i~~~~L~i~a~~~~~~d~~~iPtG 201 (335)
T TIGR02636 162 TNHVYFNLDGAD-AGSDVLSHELQLNADRYLPLDEEGIPLG 201 (335)
T ss_pred cccceEEcCCCC-CCCChhceEEEEECCcEEEeCCCcCcCC
Confidence 999999998741 1347899999999999999986 67764
No 6
>PRK14529 adenylate kinase; Provisional
Probab=99.97 E-value=1.3e-30 Score=240.56 Aligned_cols=173 Identities=25% Similarity=0.376 Sum_probs=148.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
|+|+|+|||||||||||++|+++|+ +.|||+|+++|+.+..++.+|..+++++.+|.+++++.. +.-+
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~-~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~-----------~~lv 68 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYD-LAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDIT-----------IPMI 68 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC-CCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHH-----------HHHH
Confidence 4799999999999999999999997 999999999999998889999999999999999998873 4445
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
.+|+...
T Consensus 69 ~~~l~~~------------------------------------------------------------------------- 75 (223)
T PRK14529 69 LETLKQD------------------------------------------------------------------------- 75 (223)
T ss_pred HHHHhcc-------------------------------------------------------------------------
Confidence 6666431
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~L~ 297 (363)
...+||+||||||.+||+.|.+. ...||+||+|+
T Consensus 76 ------------------------------------------~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~ 113 (223)
T PRK14529 76 ------------------------------------------GKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEIL 113 (223)
T ss_pred ------------------------------------------CCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 02359999999999999998754 35699999999
Q ss_pred CCHHHHHHHHhhcCCC-----------------------------CCCCCCc-HHHHHHHHHHHHHH---hhHHHHHhhh
Q psy11897 298 APDDVILARLVKRGLT-----------------------------SGRPDDK-EDAIKKRLIKANEN---DGPILQAFKS 344 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~~-----------------------------~~r~dd~-~e~i~~Rl~~~~~~---~~~i~~~~~~ 344 (363)
+|++++.+||.+|+.+ .+|.||+ +|++++||+.|+++ ..|+++||++
T Consensus 114 ~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~ 193 (223)
T PRK14529 114 LPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKD 193 (223)
T ss_pred CCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhh
Confidence 9999999999999632 2589996 78999999999998 4588999995
Q ss_pred -------cceeecCcccccccccC
Q psy11897 345 -------HIAKVNFLHKRRESVKS 361 (363)
Q Consensus 345 -------~~~~v~~~~~~~~~~~~ 361 (363)
.++.|||..+.+++.++
T Consensus 194 ~~~~~~~~~~~id~~~~~~~V~~~ 217 (223)
T PRK14529 194 LAAKGSTKYIELDGEGSIDEIKET 217 (223)
T ss_pred cccccCCeEEEEECCCCHHHHHHH
Confidence 38899999998887654
No 7
>KOG1604|consensus
Probab=99.97 E-value=1e-30 Score=246.97 Aligned_cols=188 Identities=44% Similarity=0.688 Sum_probs=166.2
Q ss_pred HHCCCceEEecCccchhhhhccCcchhHHHHHHHhC----------CccccccccCCCCCCCccchhhhhhhhcCCeEEE
Q psy11897 83 SKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQG----------GLVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTI 152 (363)
Q Consensus 83 ~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g----------~~~~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~ 152 (363)
+.++ .+.|..+.-|++.+.+ +|+.+.++...+ |+.+.+.|.+...+|+|+++|++||||++|+|.+
T Consensus 18 ~~~~-~~tl~n~~~l~vti~~---~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGatvGRvANRI~~G~F~l 93 (353)
T KOG1604|consen 18 QTIR-VYTLGNGKGLQVTIIN---LGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGATVGRVANRIAKGKFSL 93 (353)
T ss_pred CceE-EEEecCCCeeEEEEee---CCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecceehhhhhhcccceEEE
Confidence 3444 7888888866888888 888888776433 5667788988889999999999999999999999
Q ss_pred CCeeEEeecCCCCCccCCCCcCccccceEee-eeCCe-EEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEe-C
Q psy11897 153 DKENFTISQNVDVNHLHGGFKGFDKVIWSTY-VDKDK-VVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVS-T 229 (363)
Q Consensus 153 ~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~-~~~~~-vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~-~ 229 (363)
+|+.|+|.+|+++|++|||..||+++.|++. +..++ ++|+..++++++||||++.+.++|+|+.++++.+.+.+.. +
T Consensus 94 dgk~y~lt~N~g~n~lHgg~~gf~~~~w~v~~~~~~~~i~f~~~s~dg~eg~PG~l~V~vtYtLn~~n~l~i~~~A~~~~ 173 (353)
T KOG1604|consen 94 DGKPYKLTVNNGKNTLHGGIKGFDKVIWEVVKHQPDGVIVFSHLSPDGDEGFPGDLKVTVTYTLNVANRLLIMMEATALD 173 (353)
T ss_pred CCceEEecccCCCccccCCcccccceEEEEEEecCCCEEEEEEECCCCCCCCCccEEEEEEEEEccCCeeeeeehhhccC
Confidence 9999999999999999999999999999964 44444 4999999999999999999999999999999999999987 9
Q ss_pred CCeeeccccccccccCCCCcccccccceEEEEeecceeeecc-CCCCC
Q psy11897 230 KPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 230 ~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
+++|+|+++|.||||+|+ .+..|.+|.+++.++...+++| ..|..
T Consensus 174 ~~TPiNLtnHsYfNL~g~--~s~~I~~heI~i~a~~~~evd~~~iPTG 219 (353)
T KOG1604|consen 174 KATPINLTNHSYFNLAGH--NSGGIEGHEIQIEASKITEVDDTLIPTG 219 (353)
T ss_pred CCcceeeccceeEeccCC--CCCCccceEEEEeecccEecCCcccccc
Confidence 999999999999999998 4559999999999999999964 57754
No 8
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.96 E-value=3.1e-30 Score=254.22 Aligned_cols=184 Identities=25% Similarity=0.413 Sum_probs=154.7
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHH---h-C-------Ccc-ccccccCCCCCCCccchhhhhhhhcCCeEEECCe
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMK---Q-G-------GLV-PDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKE 155 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~---~-g-------~~~-~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~ 155 (363)
++.|+++. +++.+.. .|+.+.++.. . | ++. ..+.|. .++.|+|++++|+||||++|+|+++|+
T Consensus 15 ~~~L~N~~-~~v~i~n---~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~-~~~~y~Ga~iGr~AnRI~~G~f~ldG~ 89 (376)
T PTZ00485 15 LVWLETDR-LKVGLTN---YAASVASIQVYHPADNKWIEVNCGYPKNPEEAY-ADPDYMGATVGRCAGRVAGGVFTLDGV 89 (376)
T ss_pred EEEEEeCC-EEEEEEC---cCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHh-hCCCccCcEeCCCCCeEECCEEEECCE
Confidence 67788777 5888877 7776666543 1 3 243 245664 457899999999999999999999999
Q ss_pred eEEeecCCCCCccCCCCcCccccceEeee--eC--CeEEEEEeCCCCCCCCCceEEEEEEEEEc--cCCeEEEEEEE---
Q psy11897 156 NFTISQNVDVNHLHGGFKGFDKVIWSTYV--DK--DKVVMSHMSPDGDEGYPGAVIATTTFQLT--SDNRLFITMEA--- 226 (363)
Q Consensus 156 ~y~L~~n~~~~~lHG~~~g~~~~~w~~~~--~~--~~vt~~~~~~~~~~g~P~~~~~~v~y~L~--~~~~l~i~~~~--- 226 (363)
+|+|++|+++|+||||.+||+++.|++.. .. .+|+|++.++++++||||++.++|+|+|+ ++++|.|+|++
T Consensus 90 ~YqL~~Neg~n~LHGG~~gf~~~~W~v~~~~~~~~~~V~f~~~~~dg~~GfPG~l~v~vtYtL~~~~~~~L~i~y~a~~~ 169 (376)
T PTZ00485 90 KYYTQKNRGENTCHCGDDAYHKKHWGMKLIETANVIGVRFNYTSPHMENGFPGELVSKVTYSIERSKPNVLKTIYDSYIP 169 (376)
T ss_pred EEEccCCCCCcccCCCCCccceeeeeEEEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEEecCCCCEEEEEEEEEec
Confidence 99999999999999999999999999643 22 38999999999999999999999999997 47899999888
Q ss_pred --EeCCCeeeccccccccccCCCC-c---------ccccccceEEEEeecceeeecc-CCCCC
Q psy11897 227 --VSTKPTPINLTNHSYFNLAGHD-I---------VREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 227 --~~~~~~p~~l~~H~yFnl~g~~-~---------~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
++++++|+|+|+|+||||+|.+ . .+.++.+|.|++++++++.+++ ++|..
T Consensus 170 ~n~~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~i~a~~~l~~de~~IPTG 232 (376)
T PTZ00485 170 ETSPADATPVNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLRVPASRVAEADRMAIPTG 232 (376)
T ss_pred cccCCccceeeeccceeEEcCCCccccccccccccCCCcccceEEEEecCcEEEeCcccCccC
Confidence 6789999999999999998752 1 1246999999999999999996 67765
No 9
>PRK13808 adenylate kinase; Provisional
Probab=99.96 E-value=1.1e-29 Score=245.77 Aligned_cols=174 Identities=30% Similarity=0.493 Sum_probs=149.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
|+|+|+|||||||||||++|++.|+ +.||++|++||.++...+..|..+.+++..|++++++.. +..+
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~yg-l~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv-----------~~li 68 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYG-IVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVV-----------VGII 68 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHH-----------HHHH
Confidence 5799999999999999999999997 999999999999999999999999999999999998873 4444
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
.+++...
T Consensus 69 ~e~l~~~------------------------------------------------------------------------- 75 (333)
T PRK13808 69 SDRIEQP------------------------------------------------------------------------- 75 (333)
T ss_pred HHHHhcc-------------------------------------------------------------------------
Confidence 5555420
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcC----CCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDT----KEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~----~~~d~vi~L~ 297 (363)
+ ...+||+||||||.+||+.|+..+ ..||++|+|+
T Consensus 76 ----------------------------------------~-~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LD 114 (333)
T PRK13808 76 ----------------------------------------D-AANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELR 114 (333)
T ss_pred ----------------------------------------c-ccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEE
Confidence 0 123599999999999999887543 4799999999
Q ss_pred CCHHHHHHHHhhcCC------CCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCcccccccccC
Q psy11897 298 APDDVILARLVKRGL------TSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVKS 361 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~------~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~~ 361 (363)
||++++++|+..|.. ...|.||++|.+++||..|++++.||++||.+. ++.||++.+.++|..+
T Consensus 115 Vp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~ee 186 (333)
T PRK13808 115 VNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTRE 186 (333)
T ss_pred CCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHH
Confidence 999999999999853 236899999999999999999999999999984 8899999998887654
No 10
>PRK14528 adenylate kinase; Provisional
Probab=99.96 E-value=2.5e-29 Score=226.41 Aligned_cols=173 Identities=34% Similarity=0.515 Sum_probs=149.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
.+|+|+|||||||||+|+.|+++|+ +.++++|++++..+..++.+|..+..++..|.+++++.. ..-+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~-~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~-----------~~~~ 69 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS-IPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVV-----------IGII 69 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-CCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHH-----------HHHH
Confidence 5799999999999999999999997 999999999999999989999999999999988877652 2223
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..++...
T Consensus 70 ~~~l~~~------------------------------------------------------------------------- 76 (186)
T PRK14528 70 KDRIREA------------------------------------------------------------------------- 76 (186)
T ss_pred HHHHhCc-------------------------------------------------------------------------
Confidence 3444320
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcC----CCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDT----KEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~----~~~d~vi~L~ 297 (363)
+ ...++|+||||++.+||+.|.+.. ..+|.+|+|+
T Consensus 77 ----------------------------------------~-~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld 115 (186)
T PRK14528 77 ----------------------------------------D-CKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLE 115 (186)
T ss_pred ----------------------------------------C-ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 0 123599999999999999987643 4699999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCccccccccc
Q psy11897 298 APDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVK 360 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~ 360 (363)
||++++.+|+.+|+...+|.||++|.+++||..|++++.|++++|+++ ++.||++.+.+++..
T Consensus 116 ~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~ 180 (186)
T PRK14528 116 VPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTS 180 (186)
T ss_pred CCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHH
Confidence 999999999999998889999999999999999999999999999986 889999999988764
No 11
>PRK14526 adenylate kinase; Provisional
Probab=99.96 E-value=4e-29 Score=229.37 Aligned_cols=173 Identities=28% Similarity=0.472 Sum_probs=147.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
|+|+|+|+|||||||+|+.|++.++ +.++|+|+++|..+...+..|..+..++..|.+++++.. +..+
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~-~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~-----------~~lv 68 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELN-YYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSIT-----------IKIV 68 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHH-----------HHHH
Confidence 4799999999999999999999997 999999999999999888999999999999999887763 3344
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
.+++...
T Consensus 69 ~~~l~~~------------------------------------------------------------------------- 75 (211)
T PRK14526 69 EDKINTI------------------------------------------------------------------------- 75 (211)
T ss_pred HHHHhcc-------------------------------------------------------------------------
Confidence 5555421
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHH
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDD 301 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de 301 (363)
....+||+||||||.+||+.|.+... ...+|.|++|++
T Consensus 76 -----------------------------------------~~~~g~ilDGfPR~~~Qa~~l~~~~~-~~~vi~l~~~~~ 113 (211)
T PRK14526 76 -----------------------------------------KNNDNFILDGFPRNINQAKALDKFLP-NIKIINFLIDEE 113 (211)
T ss_pred -----------------------------------------cccCcEEEECCCCCHHHHHHHHHhcC-CCEEEEEECCHH
Confidence 01234899999999999999988553 246788999999
Q ss_pred HHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCc
Q psy11897 302 VILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFL 352 (363)
Q Consensus 302 ~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~ 352 (363)
++.+||.+|+.+ .+|.||++|.+++||+.|++++.|+++||.++ ++.||++
T Consensus 114 ~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~ 193 (211)
T PRK14526 114 LLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDAS 193 (211)
T ss_pred HHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECC
Confidence 999999999743 26999999999999999999999999999976 7899999
Q ss_pred ccccccccC
Q psy11897 353 HKRRESVKS 361 (363)
Q Consensus 353 ~~~~~~~~~ 361 (363)
.+.+++.++
T Consensus 194 ~~~~~V~~~ 202 (211)
T PRK14526 194 KDIDEVKKK 202 (211)
T ss_pred CCHHHHHHH
Confidence 999887654
No 12
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.96 E-value=7.5e-29 Score=230.11 Aligned_cols=179 Identities=27% Similarity=0.450 Sum_probs=150.2
Q ss_pred ccccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccc
Q psy11897 58 LQVEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGST 137 (363)
Q Consensus 58 ~~~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~ 137 (363)
|..++||+|+|||||||||+|++|+++|+ +.|||+|+++|+++...+.+|..+++++.+|.+++++..
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g-~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv----------- 70 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSKKEN-LKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLV----------- 70 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC-CcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHH-----------
Confidence 45678999999999999999999999997 999999999999999888999999999999999888773
Q ss_pred hhhhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccC
Q psy11897 138 VGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSD 217 (363)
Q Consensus 138 l~~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~ 217 (363)
+..+..++..-
T Consensus 71 ~~lv~~~l~~~--------------------------------------------------------------------- 81 (229)
T PTZ00088 71 IAIVKDEIAKV--------------------------------------------------------------------- 81 (229)
T ss_pred HHHHHHHHHhh---------------------------------------------------------------------
Confidence 34445555320
Q ss_pred CeEEEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEe
Q psy11897 218 NRLFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLD 297 (363)
Q Consensus 218 ~~l~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~ 297 (363)
++....+|++||||||.+||+.|.+. ..++++|.|+
T Consensus 82 -------------------------------------------~~~~~~g~iLDGfPRt~~Qa~~l~~~-~~~~~vi~l~ 117 (229)
T PTZ00088 82 -------------------------------------------TDDCFKGFILDGFPRNLKQCKELGKI-TNIDLFVNIY 117 (229)
T ss_pred -------------------------------------------ccccCceEEEecCCCCHHHHHHHHhc-CCCCEEEEEe
Confidence 00123459999999999999999875 4799999999
Q ss_pred CCHHHHHHHHhhcCC-------------------------------------CCCCCCCcHHHHHHHHHHHHHHhhHHHH
Q psy11897 298 APDDVILARLVKRGL-------------------------------------TSGRPDDKEDAIKKRLIKANENDGPILQ 340 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~-------------------------------------~~~r~dd~~e~i~~Rl~~~~~~~~~i~~ 340 (363)
+|++++++||.+|+. ..+|.||++|.+++||+.|++++.|+++
T Consensus 118 ~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~ 197 (229)
T PTZ00088 118 LPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQ 197 (229)
T ss_pred CCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999962 1268999999999999999999999999
Q ss_pred Hhhhc---ceee---cCcccccccccC
Q psy11897 341 AFKSH---IAKV---NFLHKRRESVKS 361 (363)
Q Consensus 341 ~~~~~---~~~v---~~~~~~~~~~~~ 361 (363)
||.++ ++.+ |+..+.+++.++
T Consensus 198 ~y~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (229)
T PTZ00088 198 FFKNENCNLVDFEITRGLRDFDDFYRI 224 (229)
T ss_pred HHHHcCCeEEEEecCCCCCCHHHHHHH
Confidence 99986 4445 788888776543
No 13
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=99.96 E-value=2.3e-29 Score=245.34 Aligned_cols=183 Identities=44% Similarity=0.724 Sum_probs=154.1
Q ss_pred eEEecCccchhhhhccCcchhHHHHHHHhC---C---cc---ccccccCCCCCCCccchhhhhhhhcCCeEEECCeeEEe
Q psy11897 89 IHISTGDLLRAEVRTGNTRGRNIEAIMKQG---G---LV---PDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTI 159 (363)
Q Consensus 89 ~~is~gdllr~~i~~~~~~G~~l~~~~~~g---~---~~---~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~L 159 (363)
+.|..+.-+++.|.+ .|+.+.++...+ . ++ ++...+...++++|++++|++|||++|+|.++|++|+|
T Consensus 2 ~~l~n~~~~~~~i~~---~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~~~~~g~~lgp~anRi~~g~~~~~G~~y~l 78 (326)
T cd09019 2 YTLTNGNGLRVSILN---YGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKNSPYFGATVGRVANRIANGRFTLDGKTYQL 78 (326)
T ss_pred EEEECCCCcEEEEEC---cCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCccCCcccCcCCeecCCEEEECCEEEEc
Confidence 345666334777776 777777665322 1 12 22233345679999999999999999999999999999
Q ss_pred ecCCCCCccCCCCcCccccceEe-eeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEeCCCeeecccc
Q psy11897 160 SQNVDVNHLHGGFKGFDKVIWST-YVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTN 238 (363)
Q Consensus 160 ~~n~~~~~lHG~~~g~~~~~w~~-~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~~~~p~~l~~ 238 (363)
++|+++|+|||+.+||.++.|++ ...+++|+|++.++++.++|||++.++++|+|++++.|.++++++++++||+++|+
T Consensus 79 ~~Ne~~~~LHGg~~G~~~~~w~~~~~~~~~v~l~~~~~~~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~~~~~p~~~g~ 158 (326)
T cd09019 79 EANEGPNHLHGGPKGFDKRVWDVEEVEENSVTFSLVSPDGEEGFPGNLTVTVTYTLTDDNELTIEYEATTDKPTPVNLTN 158 (326)
T ss_pred cCCCCCcccCCCCccccCcEEeEEeccCCEEEEEEECCcccCCCCeEEEEEEEEEECCCCEEEEEEEEEeCCCeEecccc
Confidence 99999999999999999999996 45678999999999889999999999999999988999999999999999999999
Q ss_pred ccccccCCCCcccccccceEEEEeecceeeecc-CCCCC
Q psy11897 239 HSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 239 H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
||||||+|. ...++.+|.|++++..++.+++ +.|..
T Consensus 159 HpyFnl~~~--~~~~~~~~~L~~~a~~~~~~d~~~iPtG 195 (326)
T cd09019 159 HSYFNLAGE--GSGDILDHELQINADRYLPVDEELIPTG 195 (326)
T ss_pred eeeEecCCC--CCCCccceEEEEecCcEEeeCCCCCcCC
Confidence 999999875 3457899999999999999985 67764
No 14
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.96 E-value=8e-29 Score=226.94 Aligned_cols=173 Identities=34% Similarity=0.531 Sum_probs=148.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhhh
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRVA 142 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~~ 142 (363)
||+|+|||||||||+|++|+++|+ +.|||+|++++.++...+..|..+.+++..|++++++.. ..-+.
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g-~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~-----------~~l~~ 68 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYG-LPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIV-----------NQLVK 68 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-CCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHH-----------HHHHH
Confidence 689999999999999999999997 999999999999999888999999999999988887763 33344
Q ss_pred hhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEE
Q psy11897 143 NRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFI 222 (363)
Q Consensus 143 nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i 222 (363)
.++...
T Consensus 69 ~~i~~~-------------------------------------------------------------------------- 74 (210)
T TIGR01351 69 ERLTQN-------------------------------------------------------------------------- 74 (210)
T ss_pred HHHhcC--------------------------------------------------------------------------
Confidence 444320
Q ss_pred EEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCC-CCCEEEEEeCCHH
Q psy11897 223 TMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTK-EPAIILYLDAPDD 301 (363)
Q Consensus 223 ~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~-~~d~vi~L~~~de 301 (363)
.+...+||+|||||+.+||+.|.+... .++++|+|++|++
T Consensus 75 ---------------------------------------~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~ 115 (210)
T TIGR01351 75 ---------------------------------------QDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDE 115 (210)
T ss_pred ---------------------------------------cccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHH
Confidence 001235999999999999999998877 7999999999999
Q ss_pred HHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCc
Q psy11897 302 VILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFL 352 (363)
Q Consensus 302 ~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~ 352 (363)
++.+|+.+|+.+ .+|.||+++.+++|++.|++++.|+++||+++ ++.|||+
T Consensus 116 ~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~ 195 (210)
T TIGR01351 116 ELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGN 195 (210)
T ss_pred HHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECC
Confidence 999999999631 25899999999999999999999999999985 8899999
Q ss_pred cccccccc
Q psy11897 353 HKRRESVK 360 (363)
Q Consensus 353 ~~~~~~~~ 360 (363)
.+.+++.+
T Consensus 196 ~~~~~v~~ 203 (210)
T TIGR01351 196 GPIDEVWK 203 (210)
T ss_pred CCHHHHHH
Confidence 99888764
No 15
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.96 E-value=3.3e-29 Score=245.23 Aligned_cols=182 Identities=36% Similarity=0.630 Sum_probs=154.4
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHH---hC-------CccccccccCCCCCCCccchhhhhhhhcCCeEEECCeeE
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMK---QG-------GLVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENF 157 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~---~g-------~~~~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y 157 (363)
.+.|+.+.+ ++.|.. .|+.+.++.. +| ++.+.+.|.. +++++|++++|++|||++|+|.++|++|
T Consensus 11 ~~~L~n~~l-~~~i~~---~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~-~~~~~Ga~lgp~anRI~~g~~~~~G~~y 85 (337)
T PLN00194 11 IYELKNGNI-SVKLTN---YGATITSLILPDKNGKLADVVLGFDSVEPYKN-DSPYFGAIVGRVANRIKGAKFTLNGVTY 85 (337)
T ss_pred EEEEEeCCE-EEEEEC---CCcEEEEEEeECCCCCEeeeEECCCCHHHHhh-CCCccCCeeCCCCCceeCCEEEECCEEE
Confidence 556777664 888876 7877777643 12 2223445643 3689999999999999999999999999
Q ss_pred EeecCCCCCccCCCCcCccccceEeee-eC---CeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEe-CCCe
Q psy11897 158 TISQNVDVNHLHGGFKGFDKVIWSTYV-DK---DKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVS-TKPT 232 (363)
Q Consensus 158 ~L~~n~~~~~lHG~~~g~~~~~w~~~~-~~---~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~-~~~~ 232 (363)
+|++|+++|+|||+.+||..+.|++.. .+ ++|+|++.+++++.||||++.++++|+|++++.|.|++++++ +++|
T Consensus 86 ~l~~N~~~~~lHGg~~G~~~~~w~v~~~~~~~~~~v~~~l~~~~~~~gyP~~~~~~v~Y~L~~~~~L~i~~~~~n~~~~~ 165 (337)
T PLN00194 86 KLPPNNGPNSLHGGPKGFSKVVWEVAKYKKGEKPSITFKYHSFDGEEGFPGDLSVTVTYTLLSSNTLRLDMEAKPLNKAT 165 (337)
T ss_pred EeccCCCCcccCCCCcccCceEEeEEEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEECCCCeEEEEEEEEECCCCe
Confidence 999999999999999999999999644 33 699999999888999999999999999998899999999998 9999
Q ss_pred eeccccccccccCCCCcccccccceEEEEeecceeeecc-CCCCC
Q psy11897 233 PINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 233 p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
|+|+|+||||||+|. ...++.+|.|+++++.++.+++ ++|..
T Consensus 166 p~~~g~HpYFnL~~~--~~~~i~~~~L~i~a~~~~~~d~~~iPtG 208 (337)
T PLN00194 166 PVNLAQHTYWNLAGH--NSGDILSHKIQIFGSHITPVDENLIPTG 208 (337)
T ss_pred EEEccccceEEcCCC--CCCCcCCeEEEEecCCEEEeCCCcCcCC
Confidence 999999999999875 3457899999999999999885 67764
No 16
>PRK14531 adenylate kinase; Provisional
Probab=99.96 E-value=2.4e-28 Score=219.19 Aligned_cols=169 Identities=31% Similarity=0.514 Sum_probs=143.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
.+|+|+|+|||||||+|++|+++++ +.|||+|+++|.++..++.+|..+..++..|++++++.. ..-+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g-~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~-----------~~~~ 70 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG-LRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALV-----------LAIV 70 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-CCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHH-----------HHHH
Confidence 4799999999999999999999997 999999999999999888999999999998988877653 2222
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..++..-
T Consensus 71 ~~~l~~~------------------------------------------------------------------------- 77 (183)
T PRK14531 71 ESQLKAL------------------------------------------------------------------------- 77 (183)
T ss_pred HHHHhhc-------------------------------------------------------------------------
Confidence 2333210
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcC----CCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDT----KEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~----~~~d~vi~L~ 297 (363)
...++|+||||++..||+.|++.. ..++.+|+|+
T Consensus 78 ------------------------------------------~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~ 115 (183)
T PRK14531 78 ------------------------------------------NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLE 115 (183)
T ss_pred ------------------------------------------cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEE
Confidence 012488899999999999887643 3689999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCcccccccccC
Q psy11897 298 APDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVKS 361 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~~ 361 (363)
||++++.+|+.+| +|.||+++.+++|+..|++.+.|++++|.++ ++.||++.+.+++..+
T Consensus 116 ~~~~~l~~Rl~~R----~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~ 177 (183)
T PRK14531 116 LDDAVLIERLLAR----GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITER 177 (183)
T ss_pred CCHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHH
Confidence 9999999999998 4789999999999999999999999999976 7899999999887653
No 17
>PRK14532 adenylate kinase; Provisional
Probab=99.95 E-value=1.1e-27 Score=215.09 Aligned_cols=174 Identities=28% Similarity=0.489 Sum_probs=146.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
|+|+|+|+|||||||+|++|+++++ +.||++|+++|..+..++..|..+.+++..|+.++++.. ..-+
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g-~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~ 68 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERG-MVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIV-----------IALI 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC-CeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHH-----------HHHH
Confidence 4699999999999999999999997 999999999999998888899999999988888776553 2222
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..++...
T Consensus 69 ~~~~~~~------------------------------------------------------------------------- 75 (188)
T PRK14532 69 EERLPEA------------------------------------------------------------------------- 75 (188)
T ss_pred HHHHhCc-------------------------------------------------------------------------
Confidence 3333210
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~L~ 297 (363)
....++++||||||.+|++.|.+. ...||++|+|+
T Consensus 76 -----------------------------------------~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~ 114 (188)
T PRK14532 76 -----------------------------------------EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLK 114 (188)
T ss_pred -----------------------------------------CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 012358999999999999987643 35799999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCcccccccccC
Q psy11897 298 APDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVKS 361 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~~ 361 (363)
+|++++.+|+.+|....+|.||+++.+++|+..|.++..+++++|.+. ++.||++.+.+++.++
T Consensus 115 v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~ 180 (188)
T PRK14532 115 VDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAAS 180 (188)
T ss_pred CCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHH
Confidence 999999999999987778999999999999999999999999999875 7789999888887653
No 18
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.95 E-value=1.6e-27 Score=219.09 Aligned_cols=174 Identities=33% Similarity=0.525 Sum_probs=147.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
+||+|+|+|||||||+|++|+++|+ +.+|++|+++++++...+..|..+..++.+|+.++++.. ..-+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~-~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~-----------~~~i 68 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYG-IPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIV-----------IGLV 68 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHH-----------HHHH
Confidence 4799999999999999999999997 999999999999999888999999999998888777653 2333
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..++...
T Consensus 69 ~~~l~~~------------------------------------------------------------------------- 75 (215)
T PRK00279 69 KERLAQP------------------------------------------------------------------------- 75 (215)
T ss_pred HHHHhcc-------------------------------------------------------------------------
Confidence 4444320
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~L~ 297 (363)
+ ...++|+||||++.+||+.|++. ...++.+|+|+
T Consensus 76 ----------------------------------------~-~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~ 114 (215)
T PRK00279 76 ----------------------------------------D-CKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEID 114 (215)
T ss_pred ----------------------------------------C-ccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEE
Confidence 0 01259999999999999999643 34689999999
Q ss_pred CCHHHHHHHHhhcCC---------------------------CCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--cee
Q psy11897 298 APDDVILARLVKRGL---------------------------TSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAK 348 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~---------------------------~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~ 348 (363)
||++++.+|+.+|.. ..+|.||+++.+++||..|++++.++++||++. ++.
T Consensus 115 ~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~ 194 (215)
T PRK00279 115 VPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKK 194 (215)
T ss_pred CCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEE
Confidence 999999999999964 237899999999999999999999999999986 889
Q ss_pred ecCcccccccccC
Q psy11897 349 VNFLHKRRESVKS 361 (363)
Q Consensus 349 v~~~~~~~~~~~~ 361 (363)
|||+.+.+++..+
T Consensus 195 id~~~~~~~v~~~ 207 (215)
T PRK00279 195 IDGTGSIDEVFAD 207 (215)
T ss_pred EECCCCHHHHHHH
Confidence 9999999887653
No 19
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.94 E-value=3.5e-27 Score=204.95 Aligned_cols=145 Identities=36% Similarity=0.703 Sum_probs=123.2
Q ss_pred EEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhhhhhh
Q psy11897 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRVANRI 145 (363)
Q Consensus 66 l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~~nRI 145 (363)
|+|||||||||+|++|+++|+ +.|||+|++||.++...+..|..+++.+.+|+.++++.. +.-+..++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~-~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v-----------~~ll~~~l 68 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG-LVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELV-----------IELLKERL 68 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT-SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHH-----------HHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC-cceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHH-----------HHHHHHHH
Confidence 589999999999999999997 999999999999999999999999999999999887763 33344444
Q ss_pred cCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEE
Q psy11897 146 AGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITME 225 (363)
Q Consensus 146 ~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~ 225 (363)
..-
T Consensus 69 ~~~----------------------------------------------------------------------------- 71 (151)
T PF00406_consen 69 EQP----------------------------------------------------------------------------- 71 (151)
T ss_dssp HSG-----------------------------------------------------------------------------
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 420
Q ss_pred EEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHh----cCCCCCEEEEEeCCHH
Q psy11897 226 AVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVK----DTKEPAIILYLDAPDD 301 (363)
Q Consensus 226 ~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~----~~~~~d~vi~L~~~de 301 (363)
+...+||+||||||.+||+.|.+ ....|+.+|+|+||++
T Consensus 72 -------------------------------------~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~ 114 (151)
T PF00406_consen 72 -------------------------------------PCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDE 114 (151)
T ss_dssp -------------------------------------GTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HH
T ss_pred -------------------------------------cccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchh
Confidence 12356999999999999999998 6678999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc
Q psy11897 302 VILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH 345 (363)
Q Consensus 302 ~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~ 345 (363)
++.+|+.+ |+++.+++||+.|++++.|++++|+++
T Consensus 115 ~~~~R~~~---------d~~~~i~~Rl~~y~~~~~~i~~~y~~~ 149 (151)
T PF00406_consen 115 TLIERLSQ---------DNEEVIKKRLEEYRENTEPILDYYKEQ 149 (151)
T ss_dssp HHHHHHHT---------GSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhccc---------CCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999886 778999999999999999999999975
No 20
>PRK14527 adenylate kinase; Provisional
Probab=99.94 E-value=1.3e-26 Score=209.13 Aligned_cols=173 Identities=29% Similarity=0.515 Sum_probs=145.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
..|+|+|+|||||||+|+.|+++++ +.+++.|++++..+..++.+|..+..++..|.+++++... .-.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~-~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~-----------~l~ 74 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELG-LKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELIL-----------ALI 74 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-CCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHH-----------HHH
Confidence 4588999999999999999999997 9999999999999988888999999888888877765531 112
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..++.+.
T Consensus 75 ~~~l~~~------------------------------------------------------------------------- 81 (191)
T PRK14527 75 RDELAGM------------------------------------------------------------------------- 81 (191)
T ss_pred HHHHhcC-------------------------------------------------------------------------
Confidence 2233210
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~L~ 297 (363)
+ ...+|+||||++.+|++.|... ...++++|+|+
T Consensus 82 ----------------------------------------~--~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~ 119 (191)
T PRK14527 82 ----------------------------------------E--PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLE 119 (191)
T ss_pred ----------------------------------------C--CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEE
Confidence 0 1238999999999999887653 34688999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCcccccccccC
Q psy11897 298 APDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVKS 361 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~~ 361 (363)
||++++++|+.+|+...+|.||+++.+++|++.|++++.|+++||.++ ++.||++.+.+++..+
T Consensus 120 ~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~ 185 (191)
T PRK14527 120 VPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYAR 185 (191)
T ss_pred CCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHH
Confidence 999999999999998889999999999999999999999999999976 8899999999887653
No 21
>PLN02200 adenylate kinase family protein
Probab=99.94 E-value=5.4e-26 Score=211.87 Aligned_cols=172 Identities=31% Similarity=0.553 Sum_probs=144.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchh
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVG 139 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~ 139 (363)
.++.|+|+|+|||||||+|++|+++++ +.||++|+++|..+...+..|..+...+..|..++++.. ..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g-~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~-----------~~ 109 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG-FKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVT-----------VK 109 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC-CeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHH-----------HH
Confidence 445789999999999999999999997 999999999999998888899999999888888777543 12
Q ss_pred hhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCe
Q psy11897 140 RVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNR 219 (363)
Q Consensus 140 ~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~ 219 (363)
-+..++...
T Consensus 110 ~l~~~l~~~----------------------------------------------------------------------- 118 (234)
T PLN02200 110 LIQKEMESS----------------------------------------------------------------------- 118 (234)
T ss_pred HHHHHHhcC-----------------------------------------------------------------------
Confidence 222233210
Q ss_pred EEEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcC-CCCCEEEEEeC
Q psy11897 220 LFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDT-KEPAIILYLDA 298 (363)
Q Consensus 220 l~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~-~~~d~vi~L~~ 298 (363)
....+++||||++.+|++.|.+.. ..||++|+|++
T Consensus 119 --------------------------------------------~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~ 154 (234)
T PLN02200 119 --------------------------------------------DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDC 154 (234)
T ss_pred --------------------------------------------CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEEC
Confidence 113489999999999999997754 36999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCccccccccc
Q psy11897 299 PDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVK 360 (363)
Q Consensus 299 ~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~ 360 (363)
+++++.+|+.+|.. +|.||+++.+++|++.|++...|++++|+++ ++.||++.+.+++.+
T Consensus 155 ~~e~~~~Rl~~R~~--~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~ 216 (234)
T PLN02200 155 PEEEMVKRVLNRNQ--GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFE 216 (234)
T ss_pred CHHHHHHHHHcCcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence 99999999999964 6889999999999999999999999999865 789999999888764
No 22
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.2e-26 Score=207.41 Aligned_cols=168 Identities=31% Similarity=0.525 Sum_probs=147.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
+||+|+|+|||||||||++|+++++ ++|||+|+++++.+...+++|..++.+++.|++++++.+ .+-+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~-----------~~~v 68 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIV-----------NGLV 68 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHH-----------HHHH
Confidence 5799999999999999999999997 999999999999999999999999999999998888774 3445
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..|+...
T Consensus 69 ~~rl~~~------------------------------------------------------------------------- 75 (178)
T COG0563 69 KERLDEA------------------------------------------------------------------------- 75 (178)
T ss_pred HHHHHhh-------------------------------------------------------------------------
Confidence 5566531
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~L~ 297 (363)
++.. .+|.|||||++.||+.+... +..+|.++.++
T Consensus 76 ----------------------------------------d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~ 114 (178)
T COG0563 76 ----------------------------------------DCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELD 114 (178)
T ss_pred ----------------------------------------cccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeee
Confidence 1123 59999999999999998754 35789999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 298 APDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
++++++..|+..|.. |.||+++.+++|+..|++.+.|++.+|+ +.||+..+.+++.++
T Consensus 115 ~~~~~~~~r~~~r~~---r~dd~~~~~~~R~~~y~~~~~pli~~y~---~~id~~~~i~~v~~~ 172 (178)
T COG0563 115 VPEELLLERLLGRRV---REDDNEETVKKRLKVYHEQTAPLIEYYS---VTIDGSGEIEEVLAD 172 (178)
T ss_pred CCHHHHHHHHhCccc---cccCCHHHHHHHHHHHHhcccchhhhhe---eeccCCCCHHHHHHH
Confidence 999999999999975 8899999999999999999999999998 899999988877653
No 23
>PRK02496 adk adenylate kinase; Provisional
Probab=99.94 E-value=2.5e-26 Score=205.75 Aligned_cols=171 Identities=30% Similarity=0.496 Sum_probs=143.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
|+||+|+|+|||||||+|+.|+++++ +.+++.|++++..+..++..|..+..++..|..++++.. ..-
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~-~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~-----------~~~ 68 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLH-IPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLV-----------LDL 68 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHH-----------HHH
Confidence 46899999999999999999999997 999999999999998888899999999988888777653 222
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+.+++...
T Consensus 69 l~~~l~~~------------------------------------------------------------------------ 76 (184)
T PRK02496 69 VQERLQQP------------------------------------------------------------------------ 76 (184)
T ss_pred HHHHHhCc------------------------------------------------------------------------
Confidence 33444320
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcC----CCCCEEEEE
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDT----KEPAIILYL 296 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~----~~~d~vi~L 296 (363)
+ ...+|++||||++.+|++.|.+.. ..+|++|+|
T Consensus 77 -----------------------------------------~-~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l 114 (184)
T PRK02496 77 -----------------------------------------D-AANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNL 114 (184)
T ss_pred -----------------------------------------C-ccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 0 123599999999999998887542 468999999
Q ss_pred eCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCcccccccccC
Q psy11897 297 DAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVKS 361 (363)
Q Consensus 297 ~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~~ 361 (363)
++|++++.+|+..|. |.||+++.+++|++.|++++.|++++|+++ ++.||++.+.+++..+
T Consensus 115 ~~~~~~~~~Rl~~R~----~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~ 177 (184)
T PRK02496 115 DVPDDVVVERLLARG----RKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTE 177 (184)
T ss_pred eCCHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHH
Confidence 999999999999984 668899999999999999999999999875 7899999999887653
No 24
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.94 E-value=5e-26 Score=203.09 Aligned_cols=171 Identities=35% Similarity=0.635 Sum_probs=143.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhhhh
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRVAN 143 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~~n 143 (363)
|+|+|+|||||||+|++|+++++ +.|||+|++++..+..++..|..++.++.+|...+++... ..+..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~-~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ll~~ 69 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG-FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTV-----------KLLKN 69 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-CeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHH-----------HHHHH
Confidence 78999999999999999999997 9999999999999987778999999988888877766531 11112
Q ss_pred hhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEE
Q psy11897 144 RIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFIT 223 (363)
Q Consensus 144 RI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~ 223 (363)
++...
T Consensus 70 ~~~~~--------------------------------------------------------------------------- 74 (183)
T TIGR01359 70 AIQAD--------------------------------------------------------------------------- 74 (183)
T ss_pred HHhcc---------------------------------------------------------------------------
Confidence 22110
Q ss_pred EEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcC---CCCCEEEEEeCCH
Q psy11897 224 MEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDT---KEPAIILYLDAPD 300 (363)
Q Consensus 224 ~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~---~~~d~vi~L~~~d 300 (363)
....+|+||||++.+|++.|.+.. ..||++|+|++|+
T Consensus 75 ----------------------------------------~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~ 114 (183)
T TIGR01359 75 ----------------------------------------GSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPE 114 (183)
T ss_pred ----------------------------------------CCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCH
Confidence 023489999999999999887643 3699999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCcccccccccC
Q psy11897 301 DVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVKS 361 (363)
Q Consensus 301 e~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~~ 361 (363)
+++.+|+..|....+|.||+.+.+++|+..|.+...|++++|.+. ++.||++.+.+++.++
T Consensus 115 ~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~ 177 (183)
T TIGR01359 115 EVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFED 177 (183)
T ss_pred HHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHH
Confidence 999999999987778899999999999999999999999999864 7899999998877543
No 25
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.93 E-value=2.3e-25 Score=200.17 Aligned_cols=170 Identities=34% Similarity=0.582 Sum_probs=142.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhhh
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRVA 142 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~~ 142 (363)
+|+|+|+|||||||+|+.|+++|+ +.+|+++++++..+...+..|..+...+.+|..++++.. ...+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~-~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~l~~ 68 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG-LPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIV-----------IKLLK 68 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-CeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHH-----------HHHHH
Confidence 589999999999999999999997 999999999999998878899999988887776665442 12222
Q ss_pred hhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEE
Q psy11897 143 NRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFI 222 (363)
Q Consensus 143 nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i 222 (363)
.++....
T Consensus 69 ~~l~~~~------------------------------------------------------------------------- 75 (194)
T cd01428 69 ERLKKPD------------------------------------------------------------------------- 75 (194)
T ss_pred HHHhccc-------------------------------------------------------------------------
Confidence 3332100
Q ss_pred EEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCC---CCCEEEEEeCC
Q psy11897 223 TMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTK---EPAIILYLDAP 299 (363)
Q Consensus 223 ~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~---~~d~vi~L~~~ 299 (363)
....+|+||||++.+|++.|.+... .++++|+|++|
T Consensus 76 -----------------------------------------~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~ 114 (194)
T cd01428 76 -----------------------------------------CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP 114 (194)
T ss_pred -----------------------------------------ccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 1234899999999999999998776 89999999999
Q ss_pred HHHHHHHHhhcCCC-------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCccccccc
Q psy11897 300 DDVILARLVKRGLT-------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRES 358 (363)
Q Consensus 300 de~l~~Rl~~R~~~-------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~ 358 (363)
++++.+|+.+|... ..|.||+++.+++|+..|++++.++++||.+. ++.||++.+.+++
T Consensus 115 ~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 115 DEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 99999999999754 35889999999999999999999999999964 8899999887764
No 26
>PLN02842 nucleotide kinase
Probab=99.93 E-value=4e-26 Score=230.88 Aligned_cols=171 Identities=38% Similarity=0.604 Sum_probs=149.2
Q ss_pred EEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhhhhhh
Q psy11897 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRVANRI 145 (363)
Q Consensus 66 l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~~nRI 145 (363)
|+|+|||||||||++|+++|+ +.||++|++++.++..++.+|..+++++.+|.+++++.. +..+++|+
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg-~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv-----------~~ll~drl 69 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFG-LVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIV-----------IAMVTGRL 69 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhC-CCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHH-----------HHHHHHHH
Confidence 699999999999999999997 999999999999999999999999999999988888773 44556666
Q ss_pred cCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEE
Q psy11897 146 AGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITME 225 (363)
Q Consensus 146 ~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~ 225 (363)
..-
T Consensus 70 ~~~----------------------------------------------------------------------------- 72 (505)
T PLN02842 70 SRE----------------------------------------------------------------------------- 72 (505)
T ss_pred hCc-----------------------------------------------------------------------------
Confidence 530
Q ss_pred EEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHHHHHH
Q psy11897 226 AVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILA 305 (363)
Q Consensus 226 ~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de~l~~ 305 (363)
++...+||+||||||..|++.|++....||++|+|+||++++++
T Consensus 73 ------------------------------------~~~~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlle 116 (505)
T PLN02842 73 ------------------------------------DAKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILID 116 (505)
T ss_pred ------------------------------------cccCCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHH
Confidence 01123488899999999999999887789999999999999999
Q ss_pred HHhhcCCC-----------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 306 RLVKRGLT-----------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 306 Rl~~R~~~-----------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
|+.+|..+ .+|.||++|.+++||+.|++++.|++++|...++.||++.+.+++.++
T Consensus 117 Rl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfee 195 (505)
T PLN02842 117 RCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEE 195 (505)
T ss_pred HHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHH
Confidence 99998642 368999999999999999999999999999889999999999887643
No 27
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.93 E-value=8e-26 Score=218.75 Aligned_cols=177 Identities=33% Similarity=0.563 Sum_probs=140.5
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHhCC-----ccccccccCCCCCCCccchhhhhhhhcCCeEEECCeeEEeecC
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQGG-----LVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQN 162 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~-----~~~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~~n 162 (363)
.+.+..+..+.+.+.. .|+.+.++..++. +.+.+.|... ..|+|++++|++|||++|+|.++|++|+|++|
T Consensus 14 ~i~~~~~~~~~~~~~~---~GA~l~~l~~~~~~v~l~~~~~~~~~~~-~~~~ga~l~p~anRI~~g~f~~~G~~y~L~~N 89 (308)
T COG2017 14 LLTLGNGGGMVVTVPD---WGATLTSLRVNGRNLLLGFDDAESYPAT-RGYGGAILGPYANRISNGRFTLDGKTYQLPPN 89 (308)
T ss_pred EEEEeCCCeEEEEEcc---CCcEEEEEEECCceEEeecCCHHHhccc-cccccceecCccCcccCCEEEECCEEEEeCCC
Confidence 3444444443444443 5666665554441 2223455332 34789999999999999999999999999999
Q ss_pred CCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEeCC--Ceeecccccc
Q psy11897 163 VDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTK--PTPINLTNHS 240 (363)
Q Consensus 163 ~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~~--~~p~~l~~H~ 240 (363)
+++|++||+.++++++.|+....+.. +|++.+.+++++|||++.++|+|+|++++ |.|+++++++. +||+|+|+||
T Consensus 90 ~~~~~lHG~~~~~~~~v~~~~~~~~~-~~~l~~~~~~~gyP~~l~~~vtY~L~~~~-L~v~~~~~n~~~~~~p~~~g~Hp 167 (308)
T COG2017 90 EGGNALHGGARDFDWQVWEAEEDDNA-EFSLVLRDGEDGYPGNLEATVTYTLNEDG-LTVTYEVTNDGDEPTPFNLGNHP 167 (308)
T ss_pred CCCccccCCccCCCeeEEEEEeccCC-EEEEEecccCCCCCceEEEEEEEEEcCCC-EEEEEEEEeCCCCcceecccccc
Confidence 99999999999999999997655444 99999999999999999999999999998 99999998766 9999999999
Q ss_pred ccccCCCCcccccccceEEEEeecceeeecc--CCCC
Q psy11897 241 YFNLAGHDIVREVLYKKMLQELAKAKLFLID--GYPR 275 (363)
Q Consensus 241 yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D--GfPr 275 (363)
||||++..+ .+|.+...+.....+.+ ..|+
T Consensus 168 YFnl~~~~~-----~~~~~~~~~~~~l~~~~~~~ip~ 199 (308)
T COG2017 168 YFNLPGDGR-----LEHILAIASDYYLPVDDEEPIPT 199 (308)
T ss_pred eEecCCCCC-----cccEEEecCCceEEcccCCCCCc
Confidence 999987521 77888888888888887 4554
No 28
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=99.93 E-value=1.3e-25 Score=216.61 Aligned_cols=174 Identities=21% Similarity=0.330 Sum_probs=143.7
Q ss_pred CceEEecCccchhhhhccCcchhHHHHHHHhCC-cc---ccccccCCCCCCCccchhhhhhhhcCCeEEECCeeEEeecC
Q psy11897 87 EAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGG-LV---PDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQN 162 (363)
Q Consensus 87 ~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~-~~---~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~~n 162 (363)
..+.|+++++ ++.|.+ .|+.+.++...|. ++ +.+.| .+.++|++++|++|||++|+|.++|++|+|++|
T Consensus 11 ~~~~l~~~~~-~v~i~~---~Ga~i~~l~~~~~~vv~~~~~~~~---~~~~~g~~L~P~anRI~~g~f~~~G~~y~L~~N 83 (300)
T PRK15172 11 QTISLAAGDY-QATIVT---VGAGLAELTFQGRHLVIPHKPEEM---PLAHLGKVLIPWPNRIANGCYRYQGQEYQLPIN 83 (300)
T ss_pred CEEEEeCCCE-EEEEec---CCcEEEEEEECCEEEEecCCcccc---CccccccEecccCCeecCCEEEECCEEEECCCC
Confidence 3677888876 888876 7877776654331 11 11222 356899999999999999999999999999999
Q ss_pred C--CCCccCCCCcCccccceEe-eeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEE--eCCCeeeccc
Q psy11897 163 V--DVNHLHGGFKGFDKVIWST-YVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAV--STKPTPINLT 237 (363)
Q Consensus 163 ~--~~~~lHG~~~g~~~~~w~~-~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~--~~~~~p~~l~ 237 (363)
+ +.|++||+. ..+.|++ ...+++|+|++.+++ ..+|||++.++++|+|++++.|.++++++ ++++||+++|
T Consensus 84 ~~~~~~~lHG~~---~~~~W~v~~~~~~~v~l~~~~~~-~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~~~~~~P~~~g 159 (300)
T PRK15172 84 EHVSKAAIHGLL---AWRDWQISELTATSVTLTAFLPP-SYGYPFMLASQVIYSLDAATGLSVEIASQNIGDVPAPYGVG 159 (300)
T ss_pred CCCCCcccCCCc---cCceEEEEEecCCEEEEEEEcCC-CCCCCEEEEEEEEEEEccCCeEEEEEEEEECCCCceeeEEe
Confidence 8 689999994 5888997 456678999999865 58999999999999999878899888887 5899999999
Q ss_pred cccccccCCCCcccccccceEEEEeecceeeecc-CCCCC
Q psy11897 238 NHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 238 ~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
+||||||++ .++.++.|+++++.++.+++ +.|..
T Consensus 160 ~HpYFnl~~-----~~~~~~~L~~~a~~~~~~d~~~iPtg 194 (300)
T PRK15172 160 IHPYLTCNL-----TSVDEYLLQLPANQVLAVDEHANPTT 194 (300)
T ss_pred cCceEecCC-----CChhceEEEEeCCeEEecCCCcCCCc
Confidence 999999974 36889999999999999885 67865
No 29
>PRK14530 adenylate kinase; Provisional
Probab=99.92 E-value=8.2e-25 Score=201.09 Aligned_cols=168 Identities=30% Similarity=0.502 Sum_probs=134.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhh-----hccCcchhHHHHHHHhCCccccccccCCCCCCCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEV-----RTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGS 136 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i-----~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~ 136 (363)
++|+|+|+|||||||+|+.|+++++ +.||++|++++..+ ......|. ....+..|.+++++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~-~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~--------- 72 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG-VEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVN--------- 72 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHH---------
Confidence 3799999999999999999999997 99999999999887 22333443 45566677777665431
Q ss_pred chhhhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEcc
Q psy11897 137 TVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTS 216 (363)
Q Consensus 137 ~l~~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~ 216 (363)
.-+..++..
T Consensus 73 --~~l~~~l~~--------------------------------------------------------------------- 81 (215)
T PRK14530 73 --EIVEEALSD--------------------------------------------------------------------- 81 (215)
T ss_pred --HHHHHHHhc---------------------------------------------------------------------
Confidence 111112211
Q ss_pred CCeEEEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEE
Q psy11897 217 DNRLFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYL 296 (363)
Q Consensus 217 ~~~l~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L 296 (363)
..+||+||||++.+|++.|.+.. .++++|+|
T Consensus 82 ------------------------------------------------~~~~IldG~pr~~~q~~~l~~~~-~~d~vI~L 112 (215)
T PRK14530 82 ------------------------------------------------ADGFVLDGYPRNLEQAEYLESIT-DLDVVLYL 112 (215)
T ss_pred ------------------------------------------------CCCEEEcCCCCCHHHHHHHHHhc-CCCEEEEE
Confidence 12489999999999999987653 58999999
Q ss_pred eCCHHHHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ce
Q psy11897 297 DAPDDVILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IA 347 (363)
Q Consensus 297 ~~~de~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~ 347 (363)
++|++++.+|+.+|... ..|.||+++.+++||..|++++.|+++||.++ ++
T Consensus 113 d~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~ 192 (215)
T PRK14530 113 DVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLV 192 (215)
T ss_pred eCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 99999999999998642 35889999999999999999999999999985 78
Q ss_pred eecCccccccccc
Q psy11897 348 KVNFLHKRRESVK 360 (363)
Q Consensus 348 ~v~~~~~~~~~~~ 360 (363)
.|||+.+.+++.+
T Consensus 193 ~id~~~~~~~v~~ 205 (215)
T PRK14530 193 EVDGEQTPDEVWA 205 (215)
T ss_pred EEECCCCHHHHHH
Confidence 9999999887754
No 30
>KOG3078|consensus
Probab=99.92 E-value=4.6e-25 Score=202.53 Aligned_cols=168 Identities=32% Similarity=0.565 Sum_probs=144.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchh
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVG 139 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~ 139 (363)
.+++++++|+|||||+|+|.+|++.|+ +.||++||++|+.|...+++|..+++.++.|.+++++.. +.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~-~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv-----------~~ 81 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFG-VIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVV-----------VR 81 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcC-CccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHH-----------HH
Confidence 467999999999999999999999997 999999999999999999999999999999999999874 22
Q ss_pred hhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCe
Q psy11897 140 RVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNR 219 (363)
Q Consensus 140 ~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~ 219 (363)
-...++...
T Consensus 82 ~l~~~l~~~----------------------------------------------------------------------- 90 (235)
T KOG3078|consen 82 LLEKRLENP----------------------------------------------------------------------- 90 (235)
T ss_pred HHHhhcccc-----------------------------------------------------------------------
Confidence 233333321
Q ss_pred EEEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCC
Q psy11897 220 LFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAP 299 (363)
Q Consensus 220 l~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~ 299 (363)
..+.+|++||||||..||+.+.+....+|.||.|+||
T Consensus 91 -------------------------------------------~~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp 127 (235)
T KOG3078|consen 91 -------------------------------------------RCQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVP 127 (235)
T ss_pred -------------------------------------------ccccccccCCCCcchHHHHHHHHccCCcceEEEecCC
Confidence 1235699999999999999988888899999999999
Q ss_pred HHHHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcce--eec
Q psy11897 300 DDVILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSHIA--KVN 350 (363)
Q Consensus 300 de~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~--~v~ 350 (363)
++.+.+|+.+|+.+ .+|.||++|.+++||+.|++++.|+++||+++.+ .++
T Consensus 128 ~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~ 207 (235)
T KOG3078|consen 128 EEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFS 207 (235)
T ss_pred HHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeecc
Confidence 99999999999752 3789999999999999999999999999999843 444
Q ss_pred Ccc
Q psy11897 351 FLH 353 (363)
Q Consensus 351 ~~~ 353 (363)
+..
T Consensus 208 ~~~ 210 (235)
T KOG3078|consen 208 GEK 210 (235)
T ss_pred Ccc
Confidence 433
No 31
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.90 E-value=2.3e-23 Score=185.97 Aligned_cols=173 Identities=38% Similarity=0.659 Sum_probs=140.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhhh
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRVA 142 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~~ 142 (363)
.|+|+|+|||||||+|+.|+++++ +.+++.|++++..+...+..|..+..++.+|.+.+.+.. ...+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~ 72 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYG-FTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTV-----------LDLLK 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH-----------HHHHH
Confidence 488899999999999999999997 999999999998877667778888887777665554331 11112
Q ss_pred hhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEE
Q psy11897 143 NRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFI 222 (363)
Q Consensus 143 nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i 222 (363)
.++...
T Consensus 73 ~~~~~~-------------------------------------------------------------------------- 78 (188)
T TIGR01360 73 DAMVAA-------------------------------------------------------------------------- 78 (188)
T ss_pred HHHHcc--------------------------------------------------------------------------
Confidence 222110
Q ss_pred EEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHHH
Q psy11897 223 TMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDV 302 (363)
Q Consensus 223 ~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de~ 302 (363)
-+...++|+||||++..|++.|......||++|+|++|.++
T Consensus 79 ---------------------------------------~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~ 119 (188)
T TIGR01360 79 ---------------------------------------LGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDT 119 (188)
T ss_pred ---------------------------------------cCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHH
Confidence 01123589999999999999998877789999999999999
Q ss_pred HHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhh--cceeecCccccccccc
Q psy11897 303 ILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKS--HIAKVNFLHKRRESVK 360 (363)
Q Consensus 303 l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~--~~~~v~~~~~~~~~~~ 360 (363)
+.+|+.+|.....|.|++++.+.+|+..|.++..|++++|.+ .++.||++.+.+++.+
T Consensus 120 ~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~ 179 (188)
T TIGR01360 120 MVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFL 179 (188)
T ss_pred HHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHH
Confidence 999999998667899999999999999999999999999976 4889999998887654
No 32
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.88 E-value=4.8e-22 Score=190.09 Aligned_cols=136 Identities=24% Similarity=0.347 Sum_probs=118.9
Q ss_pred CCCCccchhhhhhhhcCCeEEECCeeEEeecCC--CCCccCCCCcCccccceEee-eeCCeEEEEEeCCCCCCCCCceEE
Q psy11897 131 NPYFGSTVGRVANRIAGGKFTIDKENFTISQNV--DVNHLHGGFKGFDKVIWSTY-VDKDKVVMSHMSPDGDEGYPGAVI 207 (363)
Q Consensus 131 ~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~~n~--~~~~lHG~~~g~~~~~w~~~-~~~~~vt~~~~~~~~~~g~P~~~~ 207 (363)
+.++|++++|++|||++|+|.++|++|+|++|+ ++|++||+. ..+.|++. ..+++|+|++.++ .+++|||+++
T Consensus 33 ~~~~g~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~~---~~~~w~v~~~~~~~v~l~l~~~-~~~~yP~~~~ 108 (284)
T cd09022 33 PGAAGQVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGLV---RWADWQLVEHTDSSVTLRTRIP-PQPGYPFTLE 108 (284)
T ss_pred ccccccEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCCe---ecceEEEeeccCCeEEEEEEeC-CccCCCceEE
Confidence 578999999999999999999999999999998 699999987 46789964 4567899999886 5789999999
Q ss_pred EEEEEEEccCCeEEEEEEEE--eCCCeeeccccccccccCCCCcccccccceEEEEeecceeeecc-CCCCC
Q psy11897 208 ATTTFQLTSDNRLFITMEAV--STKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 208 ~~v~y~L~~~~~l~i~~~~~--~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
++++|+|++ +.|.++++++ +++++|+++|+|||||+++. ++.+|.|++++...+.+++ ++|..
T Consensus 109 ~~~~y~L~~-~~L~i~~~v~N~~~~~~p~~~g~HpyF~l~~~-----~~~~~~L~~~a~~~~~~d~~~lptg 174 (284)
T cd09022 109 LTVTYELDD-DGLTVTLTATNVGDEPAPFGVGFHPYLSAGGA-----PLDECTLTLPADTWLPVDERLLPTG 174 (284)
T ss_pred EEEEEEEcC-CcEEEEEEEEeCCCCCeEeeeEecceEecCCC-----CcccEEEEEECceEEecCCccCCCc
Confidence 999999987 4588888877 57899999999999999753 4789999999999988885 68863
No 33
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=99.84 E-value=1.2e-21 Score=187.61 Aligned_cols=175 Identities=33% Similarity=0.511 Sum_probs=142.4
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHhC-C--cc--cc--ccccCCCCCCCccchhhhhhhhcCCeEEECCeeEEee
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQG-G--LV--PD--VSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTIS 160 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~g-~--~~--~~--~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~ 160 (363)
.+.|..+..+++.|.. .|+++.++...+ + ++ .+ +.|+.. + ++|.+++|++|||.+|+|.++|+.|+++
T Consensus 2 ~itL~n~~~~~~~i~~---~Ga~l~s~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~l~p~~~Ri~~g~~~~~g~~~~l~ 76 (300)
T PF01263_consen 2 LITLENGNGLSAVIPE---YGAELTSLQVKGNGREVLWQPDPADAYWSN-S-FGGPILFPWPNRIRNGRFTFDGKPYCLP 76 (300)
T ss_dssp EEEEEETTSEEEEEET---BTTEEEEEEETTTTEESB-B-STHHHHHHS-T-CTTCEECSCSSEEGGGEEEETTEEEEBS
T ss_pred EEEEECCCceEEEEec---cCcEEEEEEECCCCeEEecCCCChHHhccc-c-cceeeeecccceEECCEEEECCEEEEee
Confidence 4677877445888876 788877766555 1 11 11 244433 3 7899999999999999999999999999
Q ss_pred cCC-CCCccCCCCcCccccceEeee-eC-CeEEEEEeC-CCCCCCCCceEEEEEEEEEccCCeEEEEEEEEeC-CCeeec
Q psy11897 161 QNV-DVNHLHGGFKGFDKVIWSTYV-DK-DKVVMSHMS-PDGDEGYPGAVIATTTFQLTSDNRLFITMEAVST-KPTPIN 235 (363)
Q Consensus 161 ~n~-~~~~lHG~~~g~~~~~w~~~~-~~-~~vt~~~~~-~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~-~~~p~~ 235 (363)
.|. .++++||+.++ +.|++.. .+ ++++|++.+ .++.++||++|+++++|+|.+++.|.+++++++. +++|++
T Consensus 77 ~~~~~~~~~HG~~~~---~~w~v~~~~~~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~~~~L~i~~~v~n~~~~~p~~ 153 (300)
T PF01263_consen 77 WNGPYPNPIHGFARN---KPWEVEEQSEDDSVSFTLVSDPDGEEGYPFDFRLRITYTLDENGKLTITYEVTNDGKPMPFN 153 (300)
T ss_dssp SSBTTTBEETBSGGG---SB-EEEEEEETTEEEEEEEEEETTHHHSSSEEEEEEEEEEETTEEEEEEEEEEESSSEEEEB
T ss_pred eccCCCcCCCCCccc---ccEEEEEecccceEEEEEEecCccceeeccceeeEEEEEECCCCeEEEEEEEEecCccEEee
Confidence 999 99999999875 7899654 43 899999988 6666889999999999999887779999998876 999999
Q ss_pred cccccccccCCCCcccccccceEEEEeecceeeecc-CCCC
Q psy11897 236 LTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPR 275 (363)
Q Consensus 236 l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPr 275 (363)
+|+|||||+++. ++.++.+++++...+.+++ ..|.
T Consensus 154 ~g~HpyF~l~~~-----~~~~~~~~~~~~~~~~~~~~~lpt 189 (300)
T PF01263_consen 154 LGFHPYFNLPGE-----DIDDHQLQVPADEYLELDERLLPT 189 (300)
T ss_dssp EEEEEEEETTCT-----SGTTGEEEEEEEEEEEEETTSSEE
T ss_pred ccccceEEcCCc-----ceeeeEEEeccceeeecccccCCc
Confidence 999999999754 7889999999988888886 5664
No 34
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.76 E-value=1.1e-18 Score=167.43 Aligned_cols=161 Identities=19% Similarity=0.308 Sum_probs=122.6
Q ss_pred EEecCccchhhhhccCcchhHHHHHHHhC-CccccccccCCCCCCCc---cchhhhhhhhcCCeEEECCeeEEeecCCCC
Q psy11897 90 HISTGDLLRAEVRTGNTRGRNIEAIMKQG-GLVPDVSYLSSNNPYFG---STVGRVANRIAGGKFTIDKENFTISQNVDV 165 (363)
Q Consensus 90 ~is~gdllr~~i~~~~~~G~~l~~~~~~g-~~~~~~~y~~~~~~~~G---~~l~~~~nRI~~g~~~~~G~~y~L~~n~~~ 165 (363)
.|+++.+ ++.|.. .|+.+.++.... + .+..+...+.+++ ++++|++|||.+|+|.++|++|+|++
T Consensus 2 ~l~n~~~-~a~v~~---~Ga~l~s~~~~~~g---~e~l~~~~~~~~~~~~p~l~P~~gri~~g~~~~~g~~~~l~~---- 70 (288)
T cd09024 2 TLENEFL-TVTISE---HGAELTSIKDKKTG---REYLWQGDPAYWGRHAPILFPIVGRLKDDTYTIDGKTYPMPQ---- 70 (288)
T ss_pred EEECCcE-EEEEec---cCcEEEEEEeCCCC---CEEEeCCChHHcCCCCCEEEeeccCCCCCeEEECCEEeeccC----
Confidence 4666664 777765 777777765541 1 1222222233333 79999999999999999999999985
Q ss_pred CccCCCCcCcccc-ceEee-eeCCeEEEEEeCCCC-CCCCCceEEEEEEEEEccCCeEEEEEEEE--eCCCeeecccccc
Q psy11897 166 NHLHGGFKGFDKV-IWSTY-VDKDKVVMSHMSPDG-DEGYPGAVIATTTFQLTSDNRLFITMEAV--STKPTPINLTNHS 240 (363)
Q Consensus 166 ~~lHG~~~g~~~~-~w~~~-~~~~~vt~~~~~~~~-~~g~P~~~~~~v~y~L~~~~~l~i~~~~~--~~~~~p~~l~~H~ 240 (363)
|||.++ .|++. ..+++++|++.+.+. ..+|||++.++++|+|+ ++.|.++++++ +++++|+++|+||
T Consensus 71 -------HGf~r~~~w~v~~~~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~-~~~L~i~~~v~N~~~~~~p~~~g~Hp 142 (288)
T cd09024 71 -------HGFARDMEFEVVEQSDDSVTFELTDNEETLKVYPFDFELRVTYTLE-GNTLKVTYEVKNPDDKTMPFSIGGHP 142 (288)
T ss_pred -------CCCcccCceEEEEccCCEEEEEEccCcchhhcCCeEEEEEEEEEEe-CCEEEEEEEEEcCCCCceEEEEeCCc
Confidence 455665 69964 556789999988654 58999999999999998 57888888876 5789999999999
Q ss_pred ccccCCCCcccccccceEEEEee---cceeeecc
Q psy11897 241 YFNLAGHDIVREVLYKKMLQELA---KAKLFLID 271 (363)
Q Consensus 241 yFnl~g~~~~~~~i~~~~l~l~a---~~~~~i~D 271 (363)
||++++. .+.++.++.|++++ ...+.+++
T Consensus 143 YF~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (288)
T cd09024 143 AFNCPLD--EGEKFEDYYLEFEPKEELERIPLVG 174 (288)
T ss_pred eEECCCC--CCCcccceEEEECCcccceEEecCC
Confidence 9999864 34578899999999 45555554
No 35
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.75 E-value=1.5e-17 Score=157.57 Aligned_cols=132 Identities=30% Similarity=0.442 Sum_probs=113.0
Q ss_pred CCCCccchhhhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeee-e--CCeEEEEEeCCCCCCCCCceEE
Q psy11897 131 NPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYV-D--KDKVVMSHMSPDGDEGYPGAVI 207 (363)
Q Consensus 131 ~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~-~--~~~vt~~~~~~~~~~g~P~~~~ 207 (363)
..+.|.+++|++|||.+|+|.++|+.|.+..|.+.+.+||+ ...+.|++.. . +++|+|++.+.+...+||++|+
T Consensus 38 ~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~---~~~~~w~v~~~~~~~~~v~l~~~~~~~~~~~P~~~~ 114 (284)
T cd01081 38 TGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGF---VRNLPWRVVATDEEEASVTLSYDLNDGPGGYPFPLE 114 (284)
T ss_pred CCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCC---eecCcEEEEEeccCCcEEEEEEEeCCCCCCCCEEEE
Confidence 46788999999999999999999999999888899999999 4577899644 3 5799999998766669999999
Q ss_pred EEEEEEEccCCeEEEEEEEE--eCCCeeeccccccccccCCCCcccccccceEEEEeecceeeecc
Q psy11897 208 ATTTFQLTSDNRLFITMEAV--STKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID 271 (363)
Q Consensus 208 ~~v~y~L~~~~~l~i~~~~~--~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D 271 (363)
++++|+|.+ +.|+|+++++ +++++|+++|+||||++++. .+.++.|++++...+.+++
T Consensus 115 l~~ty~L~~-~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~-----~~~~~~l~~~~~~~~~~~~ 174 (284)
T cd01081 115 LTVTYTLDA-DTLTITFTVTNLGDEPMPFGLGWHPYFGLPGV-----AIEDLRLRVPASKVLPLDD 174 (284)
T ss_pred EEEEEEEeC-CeEEEEEEEEeCCCCCcceeeecCceEecCCC-----cccceEEEecCCEEEecCC
Confidence 999999986 7888888876 57899999999999999753 1789999999976666554
No 36
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.75 E-value=1.4e-17 Score=158.27 Aligned_cols=128 Identities=25% Similarity=0.354 Sum_probs=106.7
Q ss_pred CCc-cchhhhhhhhcCCeEEECCeeEEeecCC--CCCccCCCCcCccccceEee-eeCCeEEEEEeCCCCCCCCCceEEE
Q psy11897 133 YFG-STVGRVANRIAGGKFTIDKENFTISQNV--DVNHLHGGFKGFDKVIWSTY-VDKDKVVMSHMSPDGDEGYPGAVIA 208 (363)
Q Consensus 133 ~~G-~~l~~~~nRI~~g~~~~~G~~y~L~~n~--~~~~lHG~~~g~~~~~w~~~-~~~~~vt~~~~~~~~~~g~P~~~~~ 208 (363)
..| .+|+|++|||++|+|.++|++|+|+.|+ +++++||+.+ .+.|++. ..+++|+|++.+.+... ||++.+
T Consensus 37 ~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ar---~~~w~v~~~~~~~v~l~l~~~~~~~--P~~~~~ 111 (273)
T cd09021 37 AMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGDGW---RRPWQVVAASADSAELQLDHEADDP--PWAYRA 111 (273)
T ss_pred cccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccchh---cCceEEEeccCCeEEEEEecCCCCC--CEeEEE
Confidence 344 8999999999999999999999999998 8899999963 6779964 45678999998865443 999999
Q ss_pred EEEEEEccCCeEEEEEEEE--eCCCeeeccccccccccCCCCcccccccceEEEEeecceeeec-cCCCC
Q psy11897 209 TTTFQLTSDNRLFITMEAV--STKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLI-DGYPR 275 (363)
Q Consensus 209 ~v~y~L~~~~~l~i~~~~~--~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~-DGfPr 275 (363)
+++|+|.+ +.|.++++++ +++++|+++|+||||++++ ++.|++++...+.++ |..|.
T Consensus 112 ~~~y~L~~-~~L~i~~~~~N~~~~~~~~~~g~H~YF~~~~---------~~~l~v~~~~~~~~d~~~lp~ 171 (273)
T cd09021 112 EQRFHLAG-DGLSITLSVTNRGDRPMPAGLGFHPYFPRTP---------DTRLQADADGVWLEDEDHLPT 171 (273)
T ss_pred EEEEEEcC-CCEEEEEEEEECCCCCceeeeecCccEecCC---------CCEEEEecceEEecCCCcCCC
Confidence 99999975 6777777776 5789999999999999963 688999998776555 35664
No 37
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.58 E-value=1.7e-15 Score=144.16 Aligned_cols=161 Identities=18% Similarity=0.275 Sum_probs=113.8
Q ss_pred ceEEecCc--cchhhhhccCcchhHHHHHHHhCC---ccccccccCCC-CCCCc-cchhhhhhhhcCCeEEECCeeEEee
Q psy11897 88 AIHISTGD--LLRAEVRTGNTRGRNIEAIMKQGG---LVPDVSYLSSN-NPYFG-STVGRVANRIAGGKFTIDKENFTIS 160 (363)
Q Consensus 88 ~~~is~gd--llr~~i~~~~~~G~~l~~~~~~g~---~~~~~~y~~~~-~~~~G-~~l~~~~nRI~~g~~~~~G~~y~L~ 160 (363)
.+.|+.++ + ++.+.+ ..|+.+.++..+|. +.+...++... +...| .+++|++|||.+|.|.++|++|+|+
T Consensus 3 ~~~l~~~~~~~-~~~v~p--~~Ga~l~s~~~~g~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp 79 (271)
T cd09025 3 TYELSDEEAGS-RLRVVP--ERGGLITRWTVQGRELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLK 79 (271)
T ss_pred EEEEEcCCCce-EEEEec--ccCCEEEEEecCCEEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCEEEecc
Confidence 56667665 4 555554 36666655544331 11222333222 22223 5899999999999999999999998
Q ss_pred cCCCCCccCCCCcCcccc-ceEeee-e-CCeEEEEEeCCC-CCCCCCceEEEEEEEEEccCCeEEEEEEEE--eCCCeee
Q psy11897 161 QNVDVNHLHGGFKGFDKV-IWSTYV-D-KDKVVMSHMSPD-GDEGYPGAVIATTTFQLTSDNRLFITMEAV--STKPTPI 234 (363)
Q Consensus 161 ~n~~~~~lHG~~~g~~~~-~w~~~~-~-~~~vt~~~~~~~-~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~--~~~~~p~ 234 (363)
. | ||.+. .|++.. . +..++|++.+.+ ...+|||+|+++++|+|++ +.|.++++++ +++++|+
T Consensus 80 ~-------H----Gf~r~~~W~v~~~~~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~~~~~~p~ 147 (271)
T cd09025 80 Q-------H----GFARDLPWEVELLGDGAGLTLTLRDNEATRAVYPFDFELELTYRLAG-NTLEIAQRVHNLGDQPMPF 147 (271)
T ss_pred C-------c----ccccCCCEEEEecCCCcEEEEEEeCCHHHHhhCCceEEEEEEEEEeC-CEEEEEEEEEECCCCcEEE
Confidence 5 4 55565 599654 3 468999998755 4689999999999999976 6777777765 5889999
Q ss_pred ccccccccccCCCCcccccccceEEEEeecceeeec
Q psy11897 235 NLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLI 270 (363)
Q Consensus 235 ~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~ 270 (363)
++|+||||++++ +.++.|++++..++..+
T Consensus 148 ~~g~HpYF~~~~-------~~~~~l~~~~~~~~~~~ 176 (271)
T cd09025 148 SFGFHPYFAVPD-------KAKLSLDLPPTRCFDQK 176 (271)
T ss_pred EEecCceeeCCc-------hhccEEEcCHHHHhhhc
Confidence 999999999964 35677777765554443
No 38
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.48 E-value=5.9e-13 Score=118.35 Aligned_cols=158 Identities=25% Similarity=0.369 Sum_probs=119.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcch--------hHHHHHHHhCCccccccccCCCCCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRG--------RNIEAIMKQGGLVPDVSYLSSNNPY 133 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G--------~~l~~~~~~g~~~~~~~y~~~~~~~ 133 (363)
.-+||.||+|+||||++++|.+..+ +++|++.. +...++++..| .++++++..+.+++.+.|. ..|
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~--l~~SVS~T-TR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~---gny 78 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDK--LRFSVSAT-TRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYH---GNY 78 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhcC--eEEEEEec-cCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEc---CCc
Confidence 4589999999999999999999984 66676665 66777777777 5888888999999888884 589
Q ss_pred CccchhhhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEE
Q psy11897 134 FGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQ 213 (363)
Q Consensus 134 ~G~~l~~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~ 213 (363)
+|....++...++.|+..+
T Consensus 79 YGT~~~~ve~~~~~G~~vi------------------------------------------------------------- 97 (191)
T COG0194 79 YGTSREPVEQALAEGKDVI------------------------------------------------------------- 97 (191)
T ss_pred ccCcHHHHHHHHhcCCeEE-------------------------------------------------------------
Confidence 9999999988888764221
Q ss_pred EccCCeEEEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEE
Q psy11897 214 LTSDNRLFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAII 293 (363)
Q Consensus 214 L~~~~~l~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~v 293 (363)
..+| ..-|+...+... ..+.
T Consensus 98 ------------------------------------------------------ldId-----~qGa~qvk~~~p-~~v~ 117 (191)
T COG0194 98 ------------------------------------------------------LDID-----VQGALQVKKKMP-NAVS 117 (191)
T ss_pred ------------------------------------------------------EEEe-----hHHHHHHHHhCC-CeEE
Confidence 1111 344555555443 3455
Q ss_pred EEEeCCH-HHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccc
Q psy11897 294 LYLDAPD-DVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKR 355 (363)
Q Consensus 294 i~L~~~d-e~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~ 355 (363)
|||.+|. +.|.+||.+|+ +|+++.+++||..++.+.....+ | .++.||-+.+.
T Consensus 118 IFi~pPs~eeL~~RL~~Rg------tds~e~I~~Rl~~a~~Ei~~~~~-f--dyvivNdd~e~ 171 (191)
T COG0194 118 IFILPPSLEELERRLKGRG------TDSEEVIARRLENAKKEISHADE-F--DYVIVNDDLEK 171 (191)
T ss_pred EEEcCCCHHHHHHHHHccC------CCCHHHHHHHHHHHHHHHHHHHh-C--CEEEECccHHH
Confidence 6666655 89999999887 89999999999999998876655 4 37777766554
No 39
>PRK13973 thymidylate kinase; Provisional
Probab=99.42 E-value=9.2e-13 Score=121.09 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=61.9
Q ss_pred ccCCCCCh--hhHhHHHh---cCCCCCEEEEEeCCHHHHHHHHhhcCCCC--CCCC-CcHHHHHHHHHHHHHHhhHHHHH
Q psy11897 270 IDGYPRDK--DQADQFVK---DTKEPAIILYLDAPDDVILARLVKRGLTS--GRPD-DKEDAIKKRLIKANENDGPILQA 341 (363)
Q Consensus 270 ~DGfPrt~--~qa~~l~~---~~~~~d~vi~L~~~de~l~~Rl~~R~~~~--~r~d-d~~e~i~~Rl~~~~~~~~~i~~~ 341 (363)
.+|++++. +++..|.. ....||++|+|+||++++.+|+.+|.... .|.+ ++.+.++++.+.|.+.. +.
T Consensus 104 yq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~~~~~~~~~~~~y~~l~----~~ 179 (213)
T PRK13973 104 YQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIA----AQ 179 (213)
T ss_pred HcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhchHHHHHHHHHHHHHHH----Hh
Confidence 34555543 35555543 23579999999999999999999996432 3544 35567777888887643 44
Q ss_pred hhhcceeecCcccccccccC
Q psy11897 342 FKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 342 ~~~~~~~v~~~~~~~~~~~~ 361 (363)
|...++.||++.+.+++..+
T Consensus 180 ~~~~~~~Ida~~~~e~V~~~ 199 (213)
T PRK13973 180 EPERCVVIDATASPEAVAAE 199 (213)
T ss_pred CCCcEEEEcCCCCHHHHHHH
Confidence 55568889999999887653
No 40
>PRK13974 thymidylate kinase; Provisional
Probab=99.41 E-value=1.4e-12 Score=119.74 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=65.8
Q ss_pred eccCCCCChhh--HhHHHhc---CCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhh
Q psy11897 269 LIDGYPRDKDQ--ADQFVKD---TKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFK 343 (363)
Q Consensus 269 i~DGfPrt~~q--a~~l~~~---~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~ 343 (363)
..+|||++..+ +..++.. ...||++|+|+||++++.+|+.+|. || .+.+|...|.+.+.++..+|.
T Consensus 109 ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~------dD---~~e~~~~~y~~~v~~~y~~y~ 179 (212)
T PRK13974 109 AYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK------PD---RIEAEGIEFLERVAEGFALIA 179 (212)
T ss_pred HHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc------cC---chhhhhHHHHHHHHHHHHHHH
Confidence 44789987654 5555432 3469999999999999999988763 44 366788999999999999998
Q ss_pred hc--ceeecCcccccccccC
Q psy11897 344 SH--IAKVNFLHKRRESVKS 361 (363)
Q Consensus 344 ~~--~~~v~~~~~~~~~~~~ 361 (363)
++ ++.||++.+.+++.++
T Consensus 180 ~~~~~~~Ida~~~~eeV~~~ 199 (212)
T PRK13974 180 EERNWKVISADQSIETISNE 199 (212)
T ss_pred hcCCEEEEeCCCCHHHHHHH
Confidence 75 7789999888877653
No 41
>PRK08356 hypothetical protein; Provisional
Probab=99.39 E-value=3e-12 Score=115.95 Aligned_cols=40 Identities=25% Similarity=0.563 Sum_probs=35.5
Q ss_pred eeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcC
Q psy11897 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRG 311 (363)
Q Consensus 268 ~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~ 311 (363)
+++||| |+.+|++.|.+. ...+|+|++|++++.+||.+|.
T Consensus 97 ividG~-r~~~q~~~l~~~---~~~vi~l~~~~~~~~~Rl~~R~ 136 (195)
T PRK08356 97 IAIDGV-RSRGEVEAIKRM---GGKVIYVEAKPEIRFERLRRRG 136 (195)
T ss_pred EEEcCc-CCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHhcC
Confidence 788999 999999998773 2489999999999999999986
No 42
>PRK01184 hypothetical protein; Provisional
Probab=99.36 E-value=9e-12 Score=111.37 Aligned_cols=60 Identities=33% Similarity=0.558 Sum_probs=48.1
Q ss_pred eeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCC--cHHHHHHHHHHH
Q psy11897 267 LFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDD--KEDAIKKRLIKA 331 (363)
Q Consensus 267 ~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd--~~e~i~~Rl~~~ 331 (363)
.+++||+ ++..|++.|.+.+.....+|+++||+++..+|+..|. |.+| +++.+.+|+...
T Consensus 82 ~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~----~~~d~~~~~~~~~r~~~q 143 (184)
T PRK01184 82 VVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRG----RSDDPKSWEELEERDERE 143 (184)
T ss_pred cEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcC----CCCChhhHHHHHHHHHHH
Confidence 4888999 7899998887776556789999999999999999885 3333 467788887653
No 43
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.32 E-value=1.6e-11 Score=110.18 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=48.9
Q ss_pred eeccCCCCChhhHhHHHhcCCCCCEEEEEeC-CHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcc
Q psy11897 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDA-PDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHI 346 (363)
Q Consensus 268 ~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~-~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~ 346 (363)
.++|+.|..+.+++.. .. .-++|+|.+ +.+++.+||.+|+ +++.+.+++||....+..... .+|. +
T Consensus 96 ~ild~~~~~~~~l~~~---~~-~~~vIfi~~~s~~~l~~rl~~R~------~~~~~~i~~rl~~a~~~~~~~-~~fd--~ 162 (184)
T smart00072 96 CLLDIDPQGVKQLRKA---QL-YPIVIFIAPPSSEELERRLRGRG------TETAERIQKRLAAAQKEAQEY-HLFD--Y 162 (184)
T ss_pred EEEEECHHHHHHHHHh---CC-CcEEEEEeCcCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHhhh-ccCC--E
Confidence 6777777777776654 22 227889985 5577999999876 678899999999876654321 2232 5
Q ss_pred eeecCc
Q psy11897 347 AKVNFL 352 (363)
Q Consensus 347 ~~v~~~ 352 (363)
+.+|.+
T Consensus 163 ~I~n~~ 168 (184)
T smart00072 163 VIVNDD 168 (184)
T ss_pred EEECcC
Confidence 555654
No 44
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.25 E-value=3.6e-11 Score=115.56 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=64.8
Q ss_pred eeccCCCCChhhHhHHHhcCC--CCC-EEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHH---HHHHHHHHHhhHHHHH
Q psy11897 268 FLIDGYPRDKDQADQFVKDTK--EPA-IILYLDAPDDVILARLVKRGLTSGRPDDKEDAIK---KRLIKANENDGPILQA 341 (363)
Q Consensus 268 ~i~DGfPrt~~qa~~l~~~~~--~~d-~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~---~Rl~~~~~~~~~i~~~ 341 (363)
+|+|+++.+..+.+.|..... ... .+|+|++|.+++.+|+.+|+. .+...+.++ +|++.|.+.+.|++..
T Consensus 78 vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~----~~~~~~~i~~~~~~~~~~~~~~~p~~~~ 153 (300)
T PHA02530 78 VIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGE----RAVPEDVLRSMFKQMKEYRGLVWPVYTA 153 (300)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCc----CCCCHHHHHHHHHHHHHhcCCCCceecc
Confidence 778888888888877755321 122 369999999999999999952 234555555 8999999999999888
Q ss_pred hhhc--ceeecCcccccccc
Q psy11897 342 FKSH--IAKVNFLHKRRESV 359 (363)
Q Consensus 342 ~~~~--~~~v~~~~~~~~~~ 359 (363)
|..+ .+.+|.+....+..
T Consensus 154 ~~~~~~~~~~D~dgtl~~~~ 173 (300)
T PHA02530 154 DPGLPKAVIFDIDGTLAKMG 173 (300)
T ss_pred CCCCCCEEEEECCCcCcCCC
Confidence 8654 66677777665544
No 45
>PRK06217 hypothetical protein; Validated
Probab=99.19 E-value=1.8e-10 Score=103.21 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=33.7
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccch
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr 98 (363)
|+||+|+|+|||||||+++.|+++++ +.+++.++++.
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~-~~~~~~D~~~~ 37 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLD-IPHLDTDDYFW 37 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC-CcEEEcCceee
Confidence 46899999999999999999999997 99999998853
No 46
>PRK03839 putative kinase; Provisional
Probab=99.18 E-value=9.2e-11 Score=104.56 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=32.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccch
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr 98 (363)
|+|+|+|+|||||||++++|+++++ +.+++++++++
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~-~~~id~d~~~~ 36 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLG-YEYVDLTEFAL 36 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CcEEehhhhhh
Confidence 3699999999999999999999997 99999998854
No 47
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.12 E-value=9.5e-10 Score=99.20 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=55.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcch--------hHHHHHHHhCCccccccccCCCCCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRG--------RNIEAIMKQGGLVPDVSYLSSNNPY 133 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G--------~~l~~~~~~g~~~~~~~y~~~~~~~ 133 (363)
.-|+|+||+||||||++++|.+.+++ +..+.... +....+++..| .++...+..|++++...| +..+
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~T-TR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~---~g~~ 79 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCT-TRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEV---HDNY 79 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCc-cccccCcc-CCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEE---CCee
Confidence 45889999999999999999999863 44444333 44445444444 356677777777665554 4567
Q ss_pred CccchhhhhhhhcCC
Q psy11897 134 FGSTVGRVANRIAGG 148 (363)
Q Consensus 134 ~G~~l~~~~nRI~~g 148 (363)
||.....+..-++.|
T Consensus 80 YGt~~~~i~~~~~~g 94 (186)
T PRK14737 80 YGTPKAFIEDAFKEG 94 (186)
T ss_pred ecCcHHHHHHHHHcC
Confidence 777766666555544
No 48
>PRK08118 topology modulation protein; Reviewed
Probab=99.12 E-value=1.1e-10 Score=103.34 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=32.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLL 97 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdll 97 (363)
|.||+|+|+|||||||+|+.|++.++ +.+++.++++
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~-~~~~~lD~l~ 36 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLN-IPVHHLDALF 36 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC-CCceecchhh
Confidence 45899999999999999999999996 9999988774
No 49
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.11 E-value=5.3e-10 Score=102.30 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=49.8
Q ss_pred hhHhHHHhcCCCCCEEEEEeC--CHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccc
Q psy11897 278 DQADQFVKDTKEPAIILYLDA--PDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKR 355 (363)
Q Consensus 278 ~qa~~l~~~~~~~d~vi~L~~--~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~ 355 (363)
+.+..+.+.. ||+++++.+ +.+++.+||..|+ +++.+.+.+|+..+..+...... ..++.||+..+.
T Consensus 113 ~g~~~l~~~~--pd~~~if~~pps~e~l~~Rl~~R~------~~~~~~~~~Rl~~~~~e~~~~~~---~~~~iId~~~~~ 181 (206)
T PRK14738 113 QGAASIKRLV--PEAVFIFLAPPSMDELTRRLELRR------TESPEELERRLATAPLELEQLPE---FDYVVVNPEDRL 181 (206)
T ss_pred HHHHHHHHhC--CCeEEEEEeCCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHhcccC---CCEEEECCCCCH
Confidence 3444454433 777776665 4578999999886 56678999999998776653221 247889998877
Q ss_pred ccccc
Q psy11897 356 RESVK 360 (363)
Q Consensus 356 ~~~~~ 360 (363)
++++.
T Consensus 182 e~v~~ 186 (206)
T PRK14738 182 DEAVA 186 (206)
T ss_pred HHHHH
Confidence 76654
No 50
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=99.01 E-value=3.8e-10 Score=107.45 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=86.1
Q ss_pred eEEecCccchhhhhccCcchhHHHHHHHhCC----ccccccccCCC-CCCCc-cchhhhhhhhcCCeEEECCeeEEeecC
Q psy11897 89 IHISTGDLLRAEVRTGNTRGRNIEAIMKQGG----LVPDVSYLSSN-NPYFG-STVGRVANRIAGGKFTIDKENFTISQN 162 (363)
Q Consensus 89 ~~is~gdllr~~i~~~~~~G~~l~~~~~~g~----~~~~~~y~~~~-~~~~G-~~l~~~~nRI~~g~~~~~G~~y~L~~n 162 (363)
+.|..+.+ ++.|.. .|+.+.++...|+ +.+....+... +...| .++.|+.||+.++
T Consensus 2 i~i~~~~~-~a~i~~---~Ga~l~s~~~~~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~-------------- 63 (269)
T cd09020 2 IVLDHPGA-SAEIAL---QGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPN-------------- 63 (269)
T ss_pred EEEeCCCc-eEEEEC---CCcEEEEEeCCCCceeEEECCccccCCCCcccCCCeEeeeccCCCCCC--------------
Confidence 34555544 666666 5777776655442 12222233322 23333 5689999999876
Q ss_pred CCCCccCCCCcCccccceEeee-eC--CeE--EEEEeC-CCCCCCCCceEEEEEEEEEccCCeEEEEEEE--EeCCCeee
Q psy11897 163 VDVNHLHGGFKGFDKVIWSTYV-DK--DKV--VMSHMS-PDGDEGYPGAVIATTTFQLTSDNRLFITMEA--VSTKPTPI 234 (363)
Q Consensus 163 ~~~~~lHG~~~g~~~~~w~~~~-~~--~~v--t~~~~~-~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~--~~~~~~p~ 234 (363)
..+.+||+.+ ...|++.. .. +.+ +|.+.+ ++...+|||+|.+.++|+|.+ +.|.+++++ .+++++|+
T Consensus 64 -~~~~~HGfaR---~~~W~l~~~~~~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~-~~L~~~l~v~N~g~~~~p~ 138 (269)
T cd09020 64 -ADLPAHGFAR---TRLWELLEVSEDEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGF-DTLELELTVTNTGDKPFSF 138 (269)
T ss_pred -CCCCcceeee---cCceEEeeeecCCCceEEEEEeCCChhhhhcCCCceEEEEEEEEcC-CcEEEEEEEECCCCCCeEe
Confidence 2456788754 44599643 22 344 444433 223479999999999999975 455555554 56899999
Q ss_pred ccccccccccCC
Q psy11897 235 NLTNHSYFNLAG 246 (363)
Q Consensus 235 ~l~~H~yFnl~g 246 (363)
+.|+||||+++.
T Consensus 139 ~~g~HpYf~v~d 150 (269)
T cd09020 139 TAALHTYFRVSD 150 (269)
T ss_pred hhccCeeEecCC
Confidence 999999999854
No 51
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.01 E-value=6.2e-10 Score=101.97 Aligned_cols=70 Identities=26% Similarity=0.420 Sum_probs=49.1
Q ss_pred CCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 289 EPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 289 ~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
.||++|+||+|.++.++|+.+|.....|.+.....+.+|. ++....+.+.+.++++.|||..+.+++..+
T Consensus 127 ~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~f~~kv---r~~Y~~la~~~~~r~~vIda~~~~e~v~~~ 196 (208)
T COG0125 127 KPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKV---REGYLELAAKFPERIIVIDASRPLEEVHEE 196 (208)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHH---HHHHHHHHhhCCCeEEEEECCCCHHHHHHH
Confidence 7999999999999999999999754344333222233332 333355556676678999999998877643
No 52
>PRK13949 shikimate kinase; Provisional
Probab=99.00 E-value=6.3e-09 Score=92.38 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=33.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
.+|+|+|+|||||||+++.|++.++ +.+++.+.++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~-~~~id~D~~i~~~ 39 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG-LSFIDLDFFIENR 39 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-CCeecccHHHHHH
Confidence 4799999999999999999999997 9999988775443
No 53
>PRK13975 thymidylate kinase; Provisional
Probab=98.97 E-value=1.3e-09 Score=98.00 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=44.5
Q ss_pred hcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCC-CCcHHHHHHHHHHHHHHhhHHHHHhhh-cceeecCc-cccccccc
Q psy11897 285 KDTKEPAIILYLDAPDDVILARLVKRGLTSGRP-DDKEDAIKKRLIKANENDGPILQAFKS-HIAKVNFL-HKRRESVK 360 (363)
Q Consensus 285 ~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~-dd~~e~i~~Rl~~~~~~~~~i~~~~~~-~~~~v~~~-~~~~~~~~ 360 (363)
.....||++|+|++|.+++.+|+..|. |. .++.+.+.++.+.|.+... ...++.+ ..+.||++ .+.++++.
T Consensus 109 ~~~~~pd~vi~L~~~~e~~~~Rl~~r~----~~~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~~~~Id~~~~~~eev~~ 182 (196)
T PRK13975 109 RYAKKPDLVFLLDVDIEEALKRMETRD----KEIFEKKEFLKKVQEKYLELAN-NEKFMPKYGFIVIDTTNKSIEEVFN 182 (196)
T ss_pred hCCCCCCEEEEEcCCHHHHHHHHhccC----ccccchHHHHHHHHHHHHHHHh-hcccCCcCCEEEEECCCCCHHHHHH
Confidence 334469999999999999999999885 22 2233444445555555443 2112222 26788986 66666654
No 54
>PRK08233 hypothetical protein; Provisional
Probab=98.97 E-value=2.1e-09 Score=95.16 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=46.6
Q ss_pred CCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHH-hhh----cceeecCccccccccc
Q psy11897 289 EPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQA-FKS----HIAKVNFLHKRRESVK 360 (363)
Q Consensus 289 ~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~-~~~----~~~~v~~~~~~~~~~~ 360 (363)
.+|++|+|++|.+++++|+.+|... +++.+.+.+++..|.....+...- +.. ..+.||+..+.+++.+
T Consensus 97 ~~d~~i~l~~~~~~~~~R~~~R~~~----~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~ 169 (182)
T PRK08233 97 FIDVTIFIDTPLDIAMARRILRDFK----EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIIN 169 (182)
T ss_pred HcCEEEEEcCCHHHHHHHHHHHHhh----hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHH
Confidence 3789999999999999998888531 233456778888888776664221 111 1456888777776654
No 55
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.97 E-value=3.6e-09 Score=95.12 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=43.6
Q ss_pred hHHHhcCCC--CCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhh--hcceeecCccccc
Q psy11897 281 DQFVKDTKE--PAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFK--SHIAKVNFLHKRR 356 (363)
Q Consensus 281 ~~l~~~~~~--~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~--~~~~~v~~~~~~~ 356 (363)
..+...... ||++|+|++|.+.+.+|+..|... + .+... .+..++.......+++. ...+.||++.+.+
T Consensus 117 ~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~----~--~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e 189 (195)
T TIGR00041 117 LELNEDALGDMPDLTIYLDIDPEVALERLRKRGEL----D--REEFE-KLDFFEKVRQRYLELADKEKSIHVIDATNSVE 189 (195)
T ss_pred HHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCc----c--hHHHH-HHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHH
Confidence 344443333 999999999999999999998631 1 11111 11111111122222232 2367899999999
Q ss_pred ccccC
Q psy11897 357 ESVKS 361 (363)
Q Consensus 357 ~~~~~ 361 (363)
++.++
T Consensus 190 ~v~~~ 194 (195)
T TIGR00041 190 EVEQD 194 (195)
T ss_pred HHHhh
Confidence 88765
No 56
>PLN02772 guanylate kinase
Probab=98.96 E-value=7.7e-09 Score=102.46 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=52.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcch--------hHHHHHHHhCCccccccccCCCCCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRG--------RNIEAIMKQGGLVPDVSYLSSNNPY 133 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G--------~~l~~~~~~g~~~~~~~y~~~~~~~ 133 (363)
..++|+||+||||+|++++|.+.++..+..++... +.....++..| ++++..+..|.+++...| +..+
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshT-TR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~---~Gn~ 211 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHT-TRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASV---HGNL 211 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhcccccccccccc-CCCCcccccCCceEeeCCHHHHHHHHHhCccceeeee---cCcc
Confidence 46888999999999999999998752233333332 33333333334 356666666766654443 4667
Q ss_pred CccchhhhhhhhcCC
Q psy11897 134 FGSTVGRVANRIAGG 148 (363)
Q Consensus 134 ~G~~l~~~~nRI~~g 148 (363)
||.....+..-++.|
T Consensus 212 YGTsk~~V~~vl~~G 226 (398)
T PLN02772 212 YGTSIEAVEVVTDSG 226 (398)
T ss_pred ccccHHHHHHHHHhC
Confidence 777777666555554
No 57
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.95 E-value=1.1e-08 Score=90.82 Aligned_cols=53 Identities=32% Similarity=0.391 Sum_probs=38.7
Q ss_pred hhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy11897 277 KDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANEND 335 (363)
Q Consensus 277 ~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~ 335 (363)
...++.+.+....+..++++.++++.+.+|+..|. +++++.+++|++.+..+.
T Consensus 100 ~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~------~~~~~~i~~rl~~~~~~~ 152 (180)
T TIGR03263 100 VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRG------TDSEEVIERRLAKAKKEI 152 (180)
T ss_pred HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHH
Confidence 45555566655444466666778899999999886 567789999999887544
No 58
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.93 E-value=4.2e-09 Score=94.09 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCccccccccc
Q psy11897 282 QFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVK 360 (363)
Q Consensus 282 ~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~ 360 (363)
.+......||++|+|++|.+++.+|+.+|...... .+....+.+++..... ++...+...++.||+..+.+++..
T Consensus 118 ~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~-~~~~~~~~~~~~~~y~---~~~~~~~~~~~~id~~~~~e~i~~ 192 (200)
T cd01672 118 DLATGGLKPDLTILLDIDPEVGLARIEARGRDDRD-EQEGLEFHERVREGYL---ELAAQEPERIIVIDASQPLEEVLA 192 (200)
T ss_pred HHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh-hhhhHHHHHHHHHHHH---HHHHhCCCeEEEEeCCCCHHHHHH
Confidence 33344457999999999999999999998632111 0122334444443322 333333334788999988877654
No 59
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.93 E-value=1.8e-09 Score=97.58 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=45.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
..||++|+|++|.+++.+|+..|+. ..+.+.....+.+|+..+.+. +.+.+...++.||++.+.+++.++
T Consensus 126 ~~pd~~i~l~~~~~~~~~Rl~~R~~-~~~~~~~~~~~~~~~~~~y~~---~~~~~~~~~~~Id~~~~~e~v~~~ 195 (205)
T PRK00698 126 FRPDLTLYLDVPPEVGLARIRARGE-LDRIEQEGLDFFERVREGYLE---LAEKEPERIVVIDASQSLEEVHED 195 (205)
T ss_pred CCCCEEEEEeCCHHHHHHHHHhcCC-cchhhhhhHHHHHHHHHHHHH---HHHhCCCeEEEEeCCCCHHHHHHH
Confidence 5699999999999999999999962 111111122455566543332 233343357889999888776543
No 60
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.92 E-value=2.2e-08 Score=90.77 Aligned_cols=70 Identities=27% Similarity=0.310 Sum_probs=45.5
Q ss_pred hhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccc
Q psy11897 278 DQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRE 357 (363)
Q Consensus 278 ~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~ 357 (363)
..+..+.+....+-.++++.++.+++.+|+..|. +++++.+++|+..+..++.+. +.|. ++.+|. +.++
T Consensus 105 ~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~------~~~~~~i~~rl~~~~~~~~~~-~~~d--~vi~n~--~~e~ 173 (205)
T PRK00300 105 QGARQVKKKMPDAVSIFILPPSLEELERRLRGRG------TDSEEVIARRLAKAREEIAHA-SEYD--YVIVND--DLDT 173 (205)
T ss_pred HHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHhH-HhCC--EEEECC--CHHH
Confidence 3344554444333345555678899999999886 578899999999998877553 2332 444554 4444
Q ss_pred c
Q psy11897 358 S 358 (363)
Q Consensus 358 ~ 358 (363)
+
T Consensus 174 ~ 174 (205)
T PRK00300 174 A 174 (205)
T ss_pred H
Confidence 3
No 61
>PRK04040 adenylate kinase; Provisional
Probab=98.91 E-value=1.8e-08 Score=91.02 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=36.9
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccchhhhhc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLLRAEVRT 103 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdllr~~i~~ 103 (363)
|+.|+|.|+|||||||+++.|+++++ ++.+++.|+++++....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~ 45 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKE 45 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHH
Confidence 45789999999999999999999993 38999999997766655
No 62
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.88 E-value=4.1e-09 Score=95.54 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=42.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIM 115 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~ 115 (363)
..|.|+|++||||||+++.|++ +| +.+++++.+.+..+.+++..+..+.+..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g-~~~i~~D~~~~~~~~~~~~~~~~i~~~f 54 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LG-APVIDADAIAHEVVEPGGPALQAIVEAF 54 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cC-CEEEEecHHHHHHhhccHHHHHHHHHHh
Confidence 4789999999999999999988 87 9999999998887776555555555543
No 63
>PLN02924 thymidylate kinase
Probab=98.88 E-value=3.6e-09 Score=97.94 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=38.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQG 118 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g 118 (363)
.++-|+|.|.+|||||||++.|++.+. ...+.+ .. .......+..|..++.++..+
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~-~~g~~v-~~-~~ep~~~~~~g~~ir~~l~~~ 70 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLK-GLGVAA-EL-WRFPDRTTSVGQMISAYLSNK 70 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCc-ee-eeCCCCCChHHHHHHHHHhCC
Confidence 345699999999999999999999995 333332 11 112223467888888887644
No 64
>PRK13947 shikimate kinase; Provisional
Probab=98.87 E-value=1.8e-08 Score=88.66 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=32.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
..|+|+|+|||||||+++.|++.++ +.+++.+.+++..
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg-~~~id~d~~~~~~ 39 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLS-FGFIDTDKEIEKM 39 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC-CCEEECchhhhhh
Confidence 4699999999999999999999997 9999988764433
No 65
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.87 E-value=1.4e-08 Score=91.12 Aligned_cols=62 Identities=21% Similarity=0.339 Sum_probs=41.8
Q ss_pred hcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhh-cceeecCccccccccc
Q psy11897 285 KDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKS-HIAKVNFLHKRRESVK 360 (363)
Q Consensus 285 ~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~-~~~~v~~~~~~~~~~~ 360 (363)
+.....-.+|+|++|.+++.+||..|. ..+++.+++|++.+. .|.. ..+.||.+.+.+++++
T Consensus 106 ~~~~~~~~vi~l~~s~e~l~~RL~~R~------~~~~~~i~~rl~r~~--------~~~~ad~~vi~~~~s~ee~~~ 168 (186)
T PRK10078 106 ARYQSALLPVCLQVSPEILRQRLENRG------RENASEINARLARAA--------RYQPQDCHTLNNDGSLRQSVD 168 (186)
T ss_pred HHcCCCEEEEEEeCCHHHHHHHHHHhC------CCCHHHHHHHHHHhh--------hhccCCEEEEeCCCCHHHHHH
Confidence 333345678999999999999999874 234677999995431 2222 2466776666666654
No 66
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.86 E-value=6.1e-09 Score=90.72 Aligned_cols=51 Identities=27% Similarity=0.521 Sum_probs=43.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMK 116 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~ 116 (363)
|+|.|.|+|||||||+++.|++++| +.++|+|+++|..-+. .|-.+.++..
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~g-l~~vsaG~iFR~~A~e---~gmsl~ef~~ 51 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLG-LKLVSAGTIFREMARE---RGMSLEEFSR 51 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhC-CceeeccHHHHHHHHH---cCCCHHHHHH
Confidence 4789999999999999999999997 9999999997776666 6666665543
No 67
>PRK00625 shikimate kinase; Provisional
Probab=98.85 E-value=2.3e-08 Score=89.18 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=33.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
+.|+|+|.|||||||+++.|+++++ +.+++++++++..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~-~~~id~D~~I~~~ 38 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLS-LPFFDTDDLIVSN 38 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CCEEEhhHHHHHH
Confidence 3689999999999999999999997 9999999886643
No 68
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.83 E-value=7.3e-10 Score=99.18 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=52.0
Q ss_pred hhhHhHHHhcCC--CCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCccc
Q psy11897 277 KDQADQFVKDTK--EPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHK 354 (363)
Q Consensus 277 ~~qa~~l~~~~~--~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~ 354 (363)
.+....+.+... .||++|+|+++.++..+|+..|.. . ++....-...++.+++....+.+ ....++.||+..+
T Consensus 104 ~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~-~---~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~iid~~~~ 178 (186)
T PF02223_consen 104 IDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE-K---DDEEEEDLEYLRRVREAYLELAK-DPNNWVIIDASRS 178 (186)
T ss_dssp HHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS-T---TTTTTHHHHHHHHHHHHHHHHHH-TTTTEEEEETTS-
T ss_pred chhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc-c---chHHHHHHHHHHHHHHHHHHHHc-CCCCEEEEECCCC
Confidence 344444555444 899999999999999999999975 1 12222223334444444455544 4556999999999
Q ss_pred ccccccC
Q psy11897 355 RRESVKS 361 (363)
Q Consensus 355 ~~~~~~~ 361 (363)
.++++++
T Consensus 179 ~e~v~~~ 185 (186)
T PF02223_consen 179 IEEVHEQ 185 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998765
No 69
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.82 E-value=4.2e-08 Score=86.49 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=31.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLL 97 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdll 97 (363)
.+|+|+|+|||||||+++.|++.++ +.+++.+.++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg-~~~~d~D~~~ 37 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG-YRFVDTDQWL 37 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CCEEEccHHH
Confidence 3689999999999999999999997 9899877663
No 70
>PRK07261 topology modulation protein; Provisional
Probab=98.80 E-value=1.8e-08 Score=89.50 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=30.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
+||+|+|+|||||||+++.|++.++ +.+++.+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~-~~~i~~D~~ 34 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYN-CPVLHLDTL 34 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhC-CCeEecCCE
Confidence 4799999999999999999999996 888887765
No 71
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.78 E-value=6.2e-08 Score=86.72 Aligned_cols=54 Identities=30% Similarity=0.569 Sum_probs=36.6
Q ss_pred hhhHhHHHhcCCCCCEEEEEeCC-HHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhH
Q psy11897 277 KDQADQFVKDTKEPAIILYLDAP-DDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGP 337 (363)
Q Consensus 277 ~~qa~~l~~~~~~~d~vi~L~~~-de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~ 337 (363)
.+-++.|.+....| ++|++.++ .+.+.+||..|+ +++.+.+.+|+..+.+....
T Consensus 102 ~~g~~~L~~~~~~~-~~IfI~~~s~~~l~~~l~~r~------~~~~~~i~~r~~~~~~~~~~ 156 (183)
T PF00625_consen 102 PEGVKQLKKAGFNP-IVIFIKPPSPEVLKRRLRRRG------DESEEEIEERLERAEKEFEH 156 (183)
T ss_dssp HHHHHHHHHCTTTE-EEEEEEESSHHHHHHHHHTTT------HCHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhcccCc-eEEEEEccchHHHHHHHhccc------cccHHHHHHHHHHHHHHHhH
Confidence 34455666553334 56777655 588888887765 56678899999988766554
No 72
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.77 E-value=5.4e-09 Score=88.92 Aligned_cols=36 Identities=31% Similarity=0.572 Sum_probs=30.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhh
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEV 101 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i 101 (363)
|+|+|+|||||||+++.|++..+ ..+|+.+++ +..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~-~~~i~~D~~-~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG-AVVISQDEI-RRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST-EEEEEHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-CEEEeHHHH-HHHH
Confidence 68899999999999999999997 899997765 4444
No 73
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.74 E-value=3.7e-08 Score=89.49 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=44.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIM 115 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~ 115 (363)
++|.|+|++||||||+++.|++.+| +.+|+.+++.++.+..++..+..+....
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g-~~~i~~D~~~~~~~~~~~~~~~~l~~~f 54 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG-IPILDADIYAREALAPGSPILKAILQRY 54 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC-CeEeeCcHHHHHHHhcCchHHHHHHHHh
Confidence 4689999999999999999999997 9999999997777777666666666554
No 74
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.70 E-value=1.1e-07 Score=83.92 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=29.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
|+|+|+|.||+||||.|++|+ +++ +.+++.+++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg-~~~i~l~el 33 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELG-YKVIELNEL 33 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhC-CceeeHHHH
Confidence 579999999999999999999 886 888886655
No 75
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.69 E-value=4.1e-08 Score=86.99 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=38.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMK 116 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~ 116 (363)
++|+|+|++||||||+++.|++.++ +..+.++.+|+.. .|..+..+..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~-~~F~D~D~~Ie~~------~g~sI~eIF~ 50 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN-LPFIDTDQEIEKR------TGMSIAEIFE 50 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC-CCcccchHHHHHH------HCcCHHHHHH
Confidence 5799999999999999999999996 9999988775544 3344555544
No 76
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.69 E-value=4.1e-08 Score=87.72 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=42.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIM 115 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~ 115 (363)
.|.|+|+|||||||+++.|++ +| +.+|+++++.++...+++..+..+....
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g-~~~i~~D~~~~~~~~~~~~~~~~i~~~f 51 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LG-IPVIDADKIAHEVYEPGGPALQAIVEAF 51 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CC-CCEEecCHHHHhhhhcccHHHHHHHHHc
Confidence 378999999999999999998 86 9999999998887777666666665543
No 77
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.67 E-value=2.8e-08 Score=90.65 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=41.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIM 115 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~ 115 (363)
+.|.|+|++||||||+++.|++ +| +.+|+.+++.++.+.+++.....+.+..
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g-~~vid~D~i~~~~~~~~~~~~~~l~~~f 53 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG-FLIVDADQVARDIVEPGQPALAELAEAF 53 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC-CeEEeCcHHHHHHHhcCCHHHHHHHHHh
Confidence 4688999999999999999987 76 9999999887777777555555555443
No 78
>PRK07933 thymidylate kinase; Validated
Probab=98.64 E-value=1.5e-07 Score=86.69 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=43.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCC-----CCCCCcHHHHHHHHHHHHHHhhHHHHH-hhhcceeecCcccccccccC
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTS-----GRPDDKEDAIKKRLIKANENDGPILQA-FKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~-----~r~dd~~e~i~~Rl~~~~~~~~~i~~~-~~~~~~~v~~~~~~~~~~~~ 361 (363)
..||++|+|++|.++..+|+.+|+... .|.+.. ..+.+|+..... .+.+. +...++.||+..+.+++.++
T Consensus 131 ~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~-~~f~~~v~~~Y~---~~~~~~~~~~~~~ida~~~~e~v~~~ 206 (213)
T PRK07933 131 PVPDLQVLLDVPVELAAERARRRAAQDADRARDAYERD-DGLQQRTGAVYA---ELAAQGWGGPWLVVDPDVDPAALAAR 206 (213)
T ss_pred CCCCEEEEecCCHHHHHHHHHhhccccCCccccccccc-HHHHHHHHHHHH---HHHHhcCCCCeEEeCCCCCHHHHHHH
Confidence 369999999999999999999986321 112111 233334332222 22222 23457889998888877543
No 79
>PRK04182 cytidylate kinase; Provisional
Probab=98.64 E-value=4.4e-07 Score=80.02 Aligned_cols=41 Identities=29% Similarity=0.550 Sum_probs=35.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
|.|+|+|+|||||||+++.|+++++ +.+++++++++.....
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg-~~~id~~~~~~~~~~~ 41 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLG-LKHVSAGEIFRELAKE 41 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC-CcEecHHHHHHHHHHH
Confidence 3689999999999999999999997 9999988876665443
No 80
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.59 E-value=5e-07 Score=80.19 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=40.4
Q ss_pred CCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 290 PAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 290 ~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
..++|+|++|.+++.+||..|. +. +++.+.+|+..+..... +. ..++.|+.+.+.++++++
T Consensus 111 ~~~~i~l~~~~~~~~~Rl~~R~----~~--~~~~~~~rl~~~~~~~~---~~--~~~~vi~~~~~~ee~~~~ 171 (179)
T TIGR02322 111 NLLVVNITASPDVLAQRLAARG----RE--SREEIEERLARSARFAA---AP--ADVTTIDNSGSLEVAGET 171 (179)
T ss_pred CcEEEEEECCHHHHHHHHHHcC----CC--CHHHHHHHHHHHhhccc---cc--CCEEEEeCCCCHHHHHHH
Confidence 3478999999999999999884 22 35778888865433221 11 125557777777766543
No 81
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.57 E-value=8.1e-07 Score=77.74 Aligned_cols=39 Identities=33% Similarity=0.506 Sum_probs=33.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhh
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVR 102 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~ 102 (363)
.|+|.|++||||||+++.|+++++ +.+++.+++++....
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg-~~~~~~~~~~~~~~~ 40 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS-LKLISAGDIFRELAA 40 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CceecHHHHHHHHHH
Confidence 588999999999999999999997 999998887655443
No 82
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.55 E-value=2e-08 Score=91.38 Aligned_cols=44 Identities=25% Similarity=0.247 Sum_probs=38.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNT 106 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~ 106 (363)
+.|+|.|.|||||||+|+.|++.++ +.++..||.+|+.+.....
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~-~~~~~~~D~~r~~~r~~~~ 47 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRA-IDIVLSGDYLREFLRPYVD 47 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-CeEEehhHHHHHHHHHhcC
Confidence 4588899999999999999999997 8889999999988876433
No 83
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.55 E-value=8e-07 Score=76.42 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=32.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
.|+|+|+|||||||+++.|+++++ +..++.++++...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~-~~~~~~d~~~~~~ 37 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG-LPFVDLDELIEQR 37 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC-CCEEEchHHHHHH
Confidence 378999999999999999999997 9999988774433
No 84
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.54 E-value=4.6e-07 Score=81.42 Aligned_cols=65 Identities=22% Similarity=0.168 Sum_probs=39.0
Q ss_pred CCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcc
Q psy11897 287 TKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLH 353 (363)
Q Consensus 287 ~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~ 353 (363)
...||++|+|+++.+++.+|+.+|+..... ..+ ....+++....+.+......+...++.||++.
T Consensus 122 ~~~pd~~i~l~~~~~~~~~Ri~~R~r~~e~-~~~-~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~ 186 (193)
T cd01673 122 LLPPDLVIYLDASPETCLKRIKKRGRPEEQ-GIP-LDYLEDLHEAYEKWFLPQMYEKAPVLIIDANE 186 (193)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHhcCcHhhh-cCC-HHHHHHHHHHHHHHHhhccCCCCCEEEEECCc
Confidence 357999999999999999999988632111 111 23444554444444321112233578889866
No 85
>KOG3347|consensus
Probab=98.54 E-value=3.8e-07 Score=78.58 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=34.9
Q ss_pred cccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccch
Q psy11897 59 QVEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98 (363)
Q Consensus 59 ~~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr 98 (363)
+..++|+|+|-||+||||+|++|++..+ +.+|.+|++++
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~-~~~i~isd~vk 43 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTG-LEYIEISDLVK 43 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhC-CceEehhhHHh
Confidence 3556899999999999999999999997 99999998843
No 86
>PRK06762 hypothetical protein; Provisional
Probab=98.54 E-value=6.8e-07 Score=78.37 Aligned_cols=70 Identities=11% Similarity=0.102 Sum_probs=42.9
Q ss_pred hHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCccccccccc
Q psy11897 281 DQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVK 360 (363)
Q Consensus 281 ~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~ 360 (363)
+.+.+....+..+|+|++|.+++.+|+..|... + ...++.+.++++.+. ++ ..+ ..++++...+..+++.
T Consensus 87 ~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~--~-~~~~~~l~~~~~~~~----~~-~~~--~~~~~~~~~~~~~v~~ 156 (166)
T PRK06762 87 KELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS--H-EFGEDDMRRWWNPHD----TL-GVI--GETIFTDNLSLKDIFD 156 (166)
T ss_pred HHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc--c-cCCHHHHHHHHhhcC----Cc-CCC--CeEEecCCCCHHHHHH
Confidence 344444445779999999999999999988631 1 123566666665532 21 111 2455666666666654
No 87
>PRK06547 hypothetical protein; Provisional
Probab=98.52 E-value=1.7e-06 Score=77.03 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=32.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLL 97 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdll 97 (363)
++.|+|.|++||||||+++.|++.++ +..++.+++.
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~-~~~~~~d~~~ 50 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTG-FQLVHLDDLY 50 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC-CCeeccccee
Confidence 45788899999999999999999996 9999988874
No 88
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.49 E-value=3.7e-07 Score=82.02 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=40.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAI 114 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~ 114 (363)
+|+|+|++||||||+++.|++..+ +.+++++++.+..+..++.....+.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~-~~~i~~D~~~~~~~~~~~~~~~~i~~~ 51 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH-FPVIDADKIAHQVVEKGSPAYEKIVDH 51 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-CeEEeCCHHHHHHHhcCChHHHHHHHH
Confidence 478999999999999999999985 999999988777776655544555443
No 89
>PRK13948 shikimate kinase; Provisional
Probab=98.47 E-value=1.6e-06 Score=77.92 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=32.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRA 99 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~ 99 (363)
..|+|+|.+||||||+++.|+++++ ...+..+.+++.
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~lg-~~~iD~D~~ie~ 47 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRALM-LHFIDTDRYIER 47 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC-CCEEECCHHHHH
Confidence 4699999999999999999999997 999988866443
No 90
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.47 E-value=1.2e-06 Score=74.62 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=29.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
|+|.|+|||||||+|+.|+++++ +.+++.+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~-~~~~~~~~i 33 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLG-LPYLDTGGI 33 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CceeccccC
Confidence 78999999999999999999997 999998744
No 91
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.44 E-value=2.8e-06 Score=73.07 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=28.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
|+|.|+|||||||+++.|++.++ ..+++.+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~-~~~i~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG-APFIDGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC-CEEEeCccc
Confidence 68899999999999999999996 899986665
No 92
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.44 E-value=9.3e-07 Score=81.59 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=44.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHh-hHHHHHhh--hcceeecCc--ccccccccC
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANEND-GPILQAFK--SHIAKVNFL--HKRRESVKS 361 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~-~~i~~~~~--~~~~~v~~~--~~~~~~~~~ 361 (363)
..||++|+|++|.+.+.+|+..|+.... ........+|+..+.+++ .+. |. ..++.||++ .+.++++.+
T Consensus 141 ~~Pd~~i~l~~~~~~~~~Ri~~R~~~~e--~~~~~~yl~~l~~~y~~~~~~~---~~~~~~~i~id~~~~~~~e~i~~~ 214 (219)
T cd02030 141 LPPHLVIYLDVPVPEVQKRIKKRGDPHE--MKVTSAYLQDIENAYKKTFLPE---ISEHSEVLQYDWTEAGDTEKVVED 214 (219)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCchh--hcccHHHHHHHHHHHHHHHHHh---hccCCCEEEEeCCChhhHHHHHHH
Confidence 5799999999999999999999863211 112234555665555544 221 32 247788887 666766654
No 93
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.44 E-value=1.6e-06 Score=75.85 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=28.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
|+|+|+|||||||+++.|++.++ ...++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-~~~v~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-AKFIEGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-CeEEeCccc
Confidence 57899999999999999999997 888987665
No 94
>PLN02422 dephospho-CoA kinase
Probab=98.43 E-value=6.7e-07 Score=83.35 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=38.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEA 113 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~ 113 (363)
.|.|+|++||||||+++.|+ ++| +.+++++++.++.+.+++..-..+.+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g-~~~idaD~~~~~l~~~g~~~~~~l~~ 51 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSG-IPVVDADKVARDVLKKGSGGWKRVVA 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCC-CeEEehhHHHHHHHHhhHHHHHHHHH
Confidence 58899999999999999998 687 99999999978777764433333433
No 95
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.43 E-value=4.8e-07 Score=82.92 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=44.1
Q ss_pred CCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccc
Q psy11897 289 EPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESV 359 (363)
Q Consensus 289 ~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~ 359 (363)
.+|.+|+++||.+++.+||..|. ..+.+.+++|+..+.....++. . .-..|+.+.+.+++.
T Consensus 133 ~~d~ii~V~a~~e~~~~Rl~~R~------~~s~e~~~~Ri~~q~~~~~~~~-~---ad~vI~N~g~~e~l~ 193 (208)
T PRK14731 133 GLDFIVVVAADTELRLERAVQRG------MGSREEIRRRIAAQWPQEKLIE-R---ADYVIYNNGTLDELK 193 (208)
T ss_pred cCCeEEEEECCHHHHHHHHHHcC------CCCHHHHHHHHHHcCChHHHHH-h---CCEEEECCCCHHHHH
Confidence 46999999999999999999995 2367899999988766655542 1 233455566665543
No 96
>KOG0707|consensus
Probab=98.42 E-value=1.7e-06 Score=79.66 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=46.0
Q ss_pred CCEEEEE--eCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccc
Q psy11897 290 PAIILYL--DAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESV 359 (363)
Q Consensus 290 ~d~vi~L--~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~ 359 (363)
+|.++.. .++...+.+||.+|+ .++++.+.+|+++...+..+.++-+.-.++.+|. .+.++..
T Consensus 148 ~~~i~i~~~pps~~~~e~rl~~rg------te~~~~l~~r~~sa~~e~~~~~~~g~~d~~~~ns-~~lee~~ 212 (231)
T KOG0707|consen 148 LDAIYIFIKPPSIKILEERLRARG------TETEESLLKRLKSAEEEFEILENSGSFDLVIVNS-DRLEEAY 212 (231)
T ss_pred CceEEEEecCCcchhHHHHhhccC------cchHHHHHHHHHhhhhhhccccCCccccceecCC-Cchhhhh
Confidence 4544444 467799999999986 6788999999998888888777755556777776 4444433
No 97
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.42 E-value=7.9e-07 Score=83.48 Aligned_cols=62 Identities=27% Similarity=0.360 Sum_probs=38.4
Q ss_pred HhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHH-hhhcceeecCcc
Q psy11897 284 VKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQA-FKSHIAKVNFLH 353 (363)
Q Consensus 284 ~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~-~~~~~~~v~~~~ 353 (363)
.+....+..+|+|++|.+.+.+|...|.. ...++.+.+....|.. |...+ +......||...
T Consensus 90 ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-----~~~~~~i~~l~~r~e~---p~~~~~wd~~~~~vd~~~ 152 (249)
T TIGR03574 90 AKEYNKNYIIIYLKAPLDTLLRRNIERGE-----KIPNEVIKDMYEKFDE---PGTKYSWDLPDLTIDTTK 152 (249)
T ss_pred HHhCCCCEEEEEecCCHHHHHHHHHhCCC-----CCCHHHHHHHHHhhCC---CCCCCCccCceEEecCCC
Confidence 33444577899999999999999988852 1234556655555532 22122 233567777754
No 98
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.40 E-value=2.1e-06 Score=75.10 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=32.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccch
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr 98 (363)
++.|+|+|+|||||||+++.|++.++ +..++.+++++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~-~~~~d~d~~~~ 40 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG-YDFIDTDHLIE 40 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC-CCEEEChHHHH
Confidence 45789999999999999999999997 88998777643
No 99
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.36 E-value=2.4e-07 Score=76.57 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=30.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
+|+|.|+|||||||+|+.|+++++ +.+++.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-CeEEEecce
Confidence 488999999999999999999996 999999984
No 100
>PRK13946 shikimate kinase; Provisional
Probab=98.35 E-value=5.7e-06 Score=74.19 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=31.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
....|+|+|.|||||||+++.|+++++ +..+..+..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg-~~~id~D~~ 44 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG-LPFLDADTE 44 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-CCeECcCHH
Confidence 345799999999999999999999997 999987754
No 101
>PRK13976 thymidylate kinase; Provisional
Probab=98.32 E-value=1.3e-06 Score=80.17 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-|+|.|..|||||||++.|++.+.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998874
No 102
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.28 E-value=9.8e-06 Score=72.05 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=31.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLL 97 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdll 97 (363)
.+|+|+|++||||||+++.|++.++ +..+..+..+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~-~~~vd~D~~i 39 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQEI 39 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC-CcEEECCchH
Confidence 4699999999999999999999996 8888888663
No 103
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.28 E-value=1.1e-05 Score=74.73 Aligned_cols=72 Identities=18% Similarity=0.029 Sum_probs=43.8
Q ss_pred CCCCCEEEEEeCCHHHHHHHHhhcCCC----CCC---------CCCcHHHHHHHHHH-HHHHhhHHHHHhhh-------c
Q psy11897 287 TKEPAIILYLDAPDDVILARLVKRGLT----SGR---------PDDKEDAIKKRLIK-ANENDGPILQAFKS-------H 345 (363)
Q Consensus 287 ~~~~d~vi~L~~~de~l~~Rl~~R~~~----~~r---------~dd~~e~i~~Rl~~-~~~~~~~i~~~~~~-------~ 345 (363)
....|+.|++++|.+++.+|+..|... .+| .--+.+....+... |.....|...-|-. .
T Consensus 126 ~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ 205 (220)
T cd02025 126 SDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADL 205 (220)
T ss_pred HHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEE
Confidence 345899999999999988888777431 011 11234556666666 77777775533332 1
Q ss_pred ceeecCccccccc
Q psy11897 346 IAKVNFLHKRRES 358 (363)
Q Consensus 346 ~~~v~~~~~~~~~ 358 (363)
++..++++..+++
T Consensus 206 ii~~~~~~~~~~~ 218 (220)
T cd02025 206 ILEKGADHSIEEV 218 (220)
T ss_pred EEEeCCCCcEEEE
Confidence 4455666655443
No 104
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.25 E-value=5.2e-06 Score=73.72 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=27.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCC-ceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPE-AIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~-~~~is~gdl 96 (363)
-|+|.|+|||||||+++.|++.++. +++++.+++
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 4888999999999999999999752 455565555
No 105
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.25 E-value=1.6e-06 Score=79.21 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=39.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRN 110 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~ 110 (363)
++.|-|+|.|||||||.++.+++ +| +..+++++..+..+.+++.....
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G-~~vidaD~v~r~~~~~~~~~~~~ 49 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LG-FPVIDADDVAREVVEPGGEALQE 49 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cC-CeEEEccHHHHHHHhccchHHHH
Confidence 35688999999999999998888 86 99999999988887775443333
No 106
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.21 E-value=4.2e-06 Score=78.63 Aligned_cols=43 Identities=19% Similarity=0.130 Sum_probs=36.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGN 105 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~ 105 (363)
+.|.|+|+.||||||+++.|.+++| +..|+++.+.++...+++
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G-~~viDaD~iar~l~~~~~ 44 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHH-IEVIDADLVVRELQAPNM 44 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC-CeEEehHHHHHHHHcCCh
Confidence 4688999999999999999999887 999998888666655543
No 107
>PLN02199 shikimate kinase
Probab=98.20 E-value=9.9e-06 Score=77.79 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=34.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
...|+|+|.+||||||+++.|++.++ +..|.++.+++..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg-~~fIDtD~lIe~~ 140 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG-YTFFDCDTLIEQA 140 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-CCEEehHHHHHHH
Confidence 34799999999999999999999997 9999988875554
No 108
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.18 E-value=1.1e-05 Score=73.63 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=27.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC--CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP--EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~--~~~~is~gdl 96 (363)
.-|.|.|++||||||+++.|+..++ .+..++.++.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 4588999999999999999998875 2455665554
No 109
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.17 E-value=4.7e-06 Score=75.83 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=32.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGN 105 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~ 105 (363)
|.|+|++||||||+++.|.+ +| +..++.+.+.+..+.+++
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g-~~~i~~D~i~~~~~~~~~ 41 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LG-AFGISADRLAKRYTEPDS 41 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CC-CEEEecchHHHHHHhcCc
Confidence 67899999999999998865 66 999999888666555533
No 110
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.15 E-value=8.8e-06 Score=74.51 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=35.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhh
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVR 102 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~ 102 (363)
.|++|.|+|++||||||+++.|++++| +..++++.+.+..+.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg-~~vidaD~i~~~l~~ 46 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLN-LNVVCADTISREITK 46 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcC-CeEEeccHHHHHHHC
Confidence 346899999999999999999999997 889998877555543
No 111
>PRK07667 uridine kinase; Provisional
Probab=98.13 E-value=2.5e-05 Score=70.64 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=29.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCccch
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDLLR 98 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdllr 98 (363)
.-|.|.|+|||||||+++.|++.++ ....++.++.+.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 3577899999999999999998752 256788887644
No 112
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.13 E-value=8.8e-06 Score=84.97 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=38.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMK 116 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~ 116 (363)
.+|+|+|.|||||||+++.|+++++ +..+.+++.++.. .|..+.++..
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~-~~fiD~D~~ie~~------~g~si~eif~ 54 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMR-LPFADADVEIERE------IGMSIPSYFE 54 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhC-CCEEEchHHHHHH------HCcCHHHHHH
Confidence 3699999999999999999999997 9999988764443 3445666553
No 113
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.13 E-value=1.5e-05 Score=82.13 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=32.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRA 99 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~ 99 (363)
|+|+|+|+|||||||+++.|+++++ +.++++++.+..
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg-~~~id~D~~i~~ 37 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLD-LQFIDMDEEIER 37 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-CeEEECcHHHHH
Confidence 4699999999999999999999997 999999877433
No 114
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.12 E-value=1.7e-05 Score=72.32 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=26.5
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEE
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHI 91 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~i 91 (363)
..+-|+|.|+-|+||||++++|+++++ ..++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~-~~~~ 33 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLG-FKVF 33 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhC-Ccee
Confidence 456799999999999999999999997 5443
No 115
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.09 E-value=1.7e-05 Score=82.14 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
-|+|.|+|||||||.++.+++..+ ..+++.+++
T Consensus 371 LVil~G~pGSGKST~A~~l~~~~g-~~~vn~D~l 403 (526)
T TIGR01663 371 MVIAVGFPGAGKSHFCKKFFQPAG-YKHVNADTL 403 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CeEECcHHH
Confidence 578899999999999999999986 999987644
No 116
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.05 E-value=4.3e-05 Score=69.64 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=29.2
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC--CceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP--EAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~--~~~~is~gdl 96 (363)
+..|.|.|++||||||+++.|++.++ ++..++.++.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 45688999999999999999999883 3566776665
No 117
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.04 E-value=2.6e-06 Score=76.47 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=37.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEA 113 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~ 113 (363)
.|.|+|+.||||||.++.|++ +| +..++++.+.+..+.+++..-..+.+
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G-~~vidaD~i~~~l~~~~~~~~~~l~~ 50 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LG-FPVIDADEIAHELYEPGSEGYKALKE 50 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT--EEEEHHHHHHHCTSCTCHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CC-CCEECccHHHHHHhhcCHHHHHHHHH
Confidence 588999999999999999988 86 99999998866666664444444444
No 118
>KOG3327|consensus
Probab=98.01 E-value=6.4e-06 Score=73.40 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=47.4
Q ss_pred hhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCccccc
Q psy11897 277 KDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRR 356 (363)
Q Consensus 277 ~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 356 (363)
.+....++..+..||+|++|+++++.+.+| .+++. .| .....++.+...+........ ....+.|||..+.+
T Consensus 112 ~dWc~~pd~gL~KPDlvlfL~v~p~~~a~r-ggfG~--Er--ye~v~fqekv~~~~q~l~r~e---~~~~~~vDAs~sve 183 (208)
T KOG3327|consen 112 LDWCKQPDVGLPKPDLVLFLDVSPEDAARR-GGFGE--ER--YETVAFQEKVLVFFQKLLRKE---DLNWHVVDASKSVE 183 (208)
T ss_pred cchhhCCccCCCCCCeEEEEeCCHHHHHHh-cCcch--hH--HHHHHHHHHHHHHHHHHHhcc---CCCeEEEecCccHH
Confidence 344455566667799999999999985444 55542 12 123456666655554443110 11277899998888
Q ss_pred ccccC
Q psy11897 357 ESVKS 361 (363)
Q Consensus 357 ~~~~~ 361 (363)
++.++
T Consensus 184 ~V~~~ 188 (208)
T KOG3327|consen 184 KVHQQ 188 (208)
T ss_pred HHHHH
Confidence 77654
No 119
>PTZ00301 uridine kinase; Provisional
Probab=98.01 E-value=5.8e-05 Score=69.41 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCHHHHHHHHhhcCCC
Q psy11897 289 EPAIILYLDAPDDVILARLVKRGLT 313 (363)
Q Consensus 289 ~~d~vi~L~~~de~l~~Rl~~R~~~ 313 (363)
..|+.|++++|.++.+.|...|...
T Consensus 126 l~D~~ifvd~~~d~~~~Rr~~Rd~~ 150 (210)
T PTZ00301 126 EMDCLIFVDTPLDICLIRRAKRDMR 150 (210)
T ss_pred hCCEEEEEeCChhHHHHHHHhhhHH
Confidence 4789999999999999998888643
No 120
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.99 E-value=4.8e-05 Score=73.97 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=30.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
...+|+|+|+|||||||+++.|++.++ +..+..+..
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg-~~~id~D~~ 167 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG-VPFVELNRE 167 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEeHHHH
Confidence 345799999999999999999999997 888865543
No 121
>PRK06696 uridine kinase; Validated
Probab=97.98 E-value=7.4e-05 Score=69.03 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=29.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCccc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDLL 97 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdll 97 (363)
+..|.|.|+|||||||+|+.|++.++ .+++++.++.+
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 44688899999999999999999882 14566677774
No 122
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.95 E-value=6.9e-05 Score=69.51 Aligned_cols=60 Identities=25% Similarity=0.419 Sum_probs=39.2
Q ss_pred eeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHH
Q psy11897 266 KLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLI 329 (363)
Q Consensus 266 ~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~ 329 (363)
...+.||...-... ..|.......|++|+++||.++..+|+..|....++ +.+.+.+|+.
T Consensus 138 ~ivIvEG~~~l~~~-~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~~g~---s~~~~~~~~~ 197 (229)
T PRK09270 138 RLVIVEGNYLLLDE-EPWRRLAGLFDFTIFLDAPAEVLRERLVARKLAGGL---SPEAAEAFVL 197 (229)
T ss_pred CEEEEcCcceeecc-ccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhcCC---CHHHHHHHHH
Confidence 34566775543221 123333335789999999999999999999643333 3566777776
No 123
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.90 E-value=2.3e-05 Score=78.81 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=34.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTG 104 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~ 104 (363)
++|.|+|++||||||+++.|++ +| +..|+++.+.+..+.++
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G-~~vidaD~i~~~l~~~~ 42 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LG-AVVVDADVLAREVVEPG 42 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC-CeEEehHHHHHHHhcCC
Confidence 4789999999999999999987 76 99999998866666553
No 124
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.83 E-value=0.00011 Score=65.00 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.5
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.+.-|+|+|+|||||||+++.|++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998873
No 125
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.82 E-value=0.00028 Score=62.25 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=31.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC-CCceEEecCccchhhh
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF-PEAIHISTGDLLRAEV 101 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~-~~~~~is~gdllr~~i 101 (363)
+++.+++.|-||+||||+++.+.+.. . ...++.|+++-+.-
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~l~~-~~ivNyG~~Mle~A 44 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKELVK-HKIVNYGDLMLEIA 44 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHHHhh-ceeeeHhHHHHHHH
Confidence 35678999999999999999888877 4 55578888754433
No 126
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=97.79 E-value=0.00014 Score=69.87 Aligned_cols=100 Identities=19% Similarity=0.039 Sum_probs=67.4
Q ss_pred CCCccCCCCcCccccceEe-eee-----CCeEEEEEeCCC-CCCCCCceEEEEEEEEEccCC-eEEEEEEEEeCCCeeec
Q psy11897 164 DVNHLHGGFKGFDKVIWST-YVD-----KDKVVMSHMSPD-GDEGYPGAVIATTTFQLTSDN-RLFITMEAVSTKPTPIN 235 (363)
Q Consensus 164 ~~~~lHG~~~g~~~~~w~~-~~~-----~~~vt~~~~~~~-~~~g~P~~~~~~v~y~L~~~~-~l~i~~~~~~~~~~p~~ 235 (363)
..|+|||..+ ...|++ ... +..|+++..... ..-|||+.+..+++|++.+.. .+..+++|.+..++|++
T Consensus 69 ~~~~lHG~~~---~~p~~~~~~~~~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~~~l~i~~~VtN~g~~~~P~~ 145 (284)
T cd09023 69 EEYPLHGRIS---NTPAELVGVEEDEEGDYEIEVSGEVREAALFGENLRLERTIETDLGSNEIRLEDRVTNEGFRPTPHM 145 (284)
T ss_pred ccccCccccc---CCCcceEEEEeccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCCceEEEEEEEEeCCCCCCcce
Confidence 6799999986 445662 221 234666666533 457899999999999996543 44444445578999999
Q ss_pred cccccccccCCCCcccccccceEEEEeecceeeeccC
Q psy11897 236 LTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDG 272 (363)
Q Consensus 236 l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DG 272 (363)
+++|+||..+.. -.+..|++++.......+.
T Consensus 146 ~~~H~n~~~p~l------~~~~~l~~p~~~~~p~~~~ 176 (284)
T cd09023 146 LLYHVNFGYPLL------DEGARLEIPSKEVTPRDAH 176 (284)
T ss_pred EEeeEEcCCccc------CCCCEEEecccccccCChh
Confidence 999999976421 1256777777655544443
No 127
>PHA03132 thymidine kinase; Provisional
Probab=97.77 E-value=0.00014 Score=75.94 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=23.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+.|+|.|+.||||||+++.|++.+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999987
No 128
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.77 E-value=0.00017 Score=66.37 Aligned_cols=69 Identities=19% Similarity=0.361 Sum_probs=42.9
Q ss_pred eeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCC-CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhh
Q psy11897 266 KLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLT-SGRPDDKEDAIKKRLIKANENDGPILQAFKS 344 (363)
Q Consensus 266 ~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~-~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~ 344 (363)
...+++|+=--.+ +.+ ....|+.|+++++.++.+.|...|-.. .|| .+...|+.|.....|..+.|-+
T Consensus 109 ~VVIvEGi~~l~d--~~l---r~~~d~kIfvdtd~D~RliRri~RD~~~rg~------~~e~vi~qy~~~vkp~~~~fIe 177 (218)
T COG0572 109 DVVIVEGILLLYD--ERL---RDLMDLKIFVDTDADVRLIRRIKRDVQERGR------DLESVIEQYVKTVRPMYEQFIE 177 (218)
T ss_pred cEEEEeccccccc--HHH---HhhcCEEEEEeCCccHHHHHHHHHHHHHhCC------CHHHHHHHHHHhhChhhhhccC
Confidence 4566777432111 122 224789999999998877776666321 222 2456788888888887776665
Q ss_pred c
Q psy11897 345 H 345 (363)
Q Consensus 345 ~ 345 (363)
.
T Consensus 178 p 178 (218)
T COG0572 178 P 178 (218)
T ss_pred c
Confidence 3
No 129
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.74 E-value=0.00021 Score=63.85 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=41.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCccccccc
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRES 358 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~ 358 (363)
..+-..|+|++|.+++.+|+..|.. . +-..+.+...+..+.. .+..+ ...+.||++.+.+++
T Consensus 97 ~~~~~~v~l~a~~~~l~~Rl~~R~~---~-~~~~~vl~~Q~~~~e~--~~~~e---~~~~~~d~~~~~~~~ 158 (176)
T PRK09825 97 SPNVHFLWLDGDYETILARMQRRAG---H-FMPPDLLQSQFDALER--PCADE---HDIARIDVNHDIENV 158 (176)
T ss_pred CCCEEEEEEeCCHHHHHHHHhcccC---C-CCCHHHHHHHHHHcCC--CCCCc---CCeEEEECCCCHHHH
Confidence 3455889999999999999999962 2 2356666666665531 11111 127788988886544
No 130
>PRK05439 pantothenate kinase; Provisional
Probab=97.74 E-value=0.00024 Score=69.10 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=27.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC------CceEEecCccc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP------EAIHISTGDLL 97 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~------~~~~is~gdll 97 (363)
.-|.|.|+|||||||+|+.|++.++ .+..|++++.+
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 3577799999999999999988553 25567777763
No 131
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.00048 Score=60.45 Aligned_cols=34 Identities=29% Similarity=0.599 Sum_probs=29.5
Q ss_pred EEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHH
Q psy11897 292 IILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKA 331 (363)
Q Consensus 292 ~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~ 331 (363)
+++.|.++.++|.+||..|+ .++.|.|..||..-
T Consensus 117 lvv~ita~p~VLaqRL~~RG------REs~eeI~aRL~R~ 150 (192)
T COG3709 117 LVVCITASPEVLAQRLAERG------RESREEILARLARA 150 (192)
T ss_pred eeEEEecCHHHHHHHHHHhc------cCCHHHHHHHHHhh
Confidence 78999999999999999997 45688899998764
No 132
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.69 E-value=6.9e-05 Score=65.51 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 70 PGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 70 pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
|||||||+++.|++.++ +..+..++++...
T Consensus 1 ~GsGKStvg~~lA~~L~-~~fiD~D~~i~~~ 30 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG-RPFIDLDDEIEER 30 (158)
T ss_dssp TTSSHHHHHHHHHHHHT-SEEEEHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhC-CCccccCHHHHHH
Confidence 79999999999999997 9999988775433
No 133
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.68 E-value=0.00058 Score=61.57 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=27.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC--CceEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP--EAIHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~--~~~~is~gdl 96 (363)
|.|.|++||||||+++.|+..++ .+..++.++.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 67899999999999999999862 3677777765
No 134
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.66 E-value=0.00029 Score=67.92 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcC
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRG 311 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~ 311 (363)
...|+.|++|+|++++.+|+..|.
T Consensus 195 d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 195 DFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred HhCCEEEEEECCHHHHHHHHHHHH
Confidence 458999999999999998888874
No 135
>KOG3354|consensus
Probab=97.60 E-value=0.00021 Score=62.25 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
-|++.|.+||||||+++.|+++++ +..+..+|+
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~-~~F~dgDd~ 46 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELG-LKFIDGDDL 46 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhC-CcccccccC
Confidence 478899999999999999999997 888887776
No 136
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.56 E-value=7e-05 Score=69.19 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=33.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
+.|.|.||+||||||+++.|+++++ +.+++.|+++|..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~-~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG-YAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CceeeCchHHHHH
Confidence 4688999999999999999999997 9999999886544
No 137
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=6.7e-05 Score=68.65 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=35.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEV 101 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i 101 (363)
+.|.|=||.||||||+|+.|++++| +.+|++|-++|+.-
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg-~~yldTGamYRa~a 43 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG-FHYLDTGAMYRAVA 43 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC-CCeecccHHHHHHH
Confidence 5688899999999999999999997 99999999887654
No 138
>COG0645 Predicted kinase [General function prediction only]
Probab=97.55 E-value=0.00036 Score=61.63 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=31.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhh
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVR 102 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~ 102 (363)
+++.|-|||||||+++.|++.++ ..+|+++.. +..+.
T Consensus 4 ~l~~Gl~GsGKstlA~~l~~~lg-A~~lrsD~i-rk~L~ 40 (170)
T COG0645 4 VLVGGLPGSGKSTLARGLAELLG-AIRLRSDVI-RKRLF 40 (170)
T ss_pred EEEecCCCccHhHHHHHHHhhcC-ceEEehHHH-HHHhc
Confidence 56799999999999999999998 999997655 54443
No 139
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=4e-05 Score=67.16 Aligned_cols=43 Identities=30% Similarity=0.489 Sum_probs=34.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
.+|||.++|+|||||||+++++++.+. ---.++|-.+..++..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~-~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR-EKGYKVGGFITPEVRE 46 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH-hcCceeeeEEeeeeec
Confidence 467999999999999999999998875 3335566666777765
No 140
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.51 E-value=0.00084 Score=64.70 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=23.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
..|+|+|++||||||+++.|. ..| .+.+.
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~-~~g-~~~~d 35 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALE-DLG-YYCVD 35 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HcC-CeEEC
Confidence 368899999999999999885 555 66653
No 141
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.51 E-value=0.00013 Score=54.83 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=23.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHH---CCCceEEe
Q psy11897 64 TRFTGKPGTGKETQAQNILSK---FPEAIHIS 92 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~---~~~~~~is 92 (363)
|+++|+|||||||+++.|++. .+ +.+++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~-~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRS-VVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCC-EEEEe
Confidence 688999999999999999998 43 55554
No 142
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.51 E-value=0.00044 Score=60.86 Aligned_cols=62 Identities=18% Similarity=0.103 Sum_probs=39.6
Q ss_pred CCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccc
Q psy11897 289 EPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESV 359 (363)
Q Consensus 289 ~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~ 359 (363)
.+-..|+|+||++++.+|+..|.. .. -+++.+...+..+. |...- ....+.||+....++++
T Consensus 90 ~~~~~v~l~a~~~~l~~Rl~~R~~---~~-a~~~vl~~Q~~~~e----p~~~~-e~~~~~id~~~~~~~~~ 151 (163)
T PRK11545 90 PNLSFIYLKGDFDVIESRLKARKG---HF-FKTQMLVTQFETLQ----EPGAD-ETDVLVVDIDQPLEGVV 151 (163)
T ss_pred CCEEEEEEECCHHHHHHHHHhccC---CC-CCHHHHHHHHHHcC----CCCCC-CCCEEEEeCCCCHHHHH
Confidence 455789999999999999999963 22 25566665555442 21100 01367788887765554
No 143
>COG4639 Predicted kinase [General function prediction only]
Probab=97.51 E-value=0.00018 Score=62.64 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=27.8
Q ss_pred CChhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhc
Q psy11897 275 RDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKR 310 (363)
Q Consensus 275 rt~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R 310 (363)
++..+...|.+....-+++|+||.|.+.+.+|-+.|
T Consensus 82 ~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 82 EDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred HHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 345555667777777889999999999999996533
No 144
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.46 E-value=9.5e-05 Score=61.01 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 145
>PRK12338 hypothetical protein; Provisional
Probab=97.45 E-value=0.00014 Score=70.80 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=35.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
|.-|+|.|+|||||||+|+.|+++++ +.++..+|.++..+..
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~-~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLN-IKHLIETDFIREVVRG 45 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCC-CeEEccChHHHHHHcC
Confidence 34678899999999999999999997 9998778887776543
No 146
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.45 E-value=9.5e-05 Score=68.65 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=34.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
+.|.|.|++||||||+++.|+++++ +.+++.|.++|+.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~-~~~~~~~~~~r~~ 42 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLG-FHYLDTGAMYRAV 42 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CCcccCchhHHHH
Confidence 4688999999999999999999997 9999999987753
No 147
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.43 E-value=0.00059 Score=67.19 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=28.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC-----CceEEecCccchh
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP-----EAIHISTGDLLRA 99 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~-----~~~~is~gdllr~ 99 (363)
++|+|+|||||||+++.|++.+. .+.+++.+|.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~ 42 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPE 42 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccc
Confidence 57899999999999988886653 1568999998743
No 148
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.42 E-value=0.00024 Score=67.83 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=21.9
Q ss_pred HhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCC
Q psy11897 280 ADQFVKDTKEPAIILYLDAPDDVILARLVKRGL 312 (363)
Q Consensus 280 a~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~ 312 (363)
.-.+.+...-.-.+|+++||.+.+++|=..|..
T Consensus 89 lyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~ 121 (270)
T PF08433_consen 89 LYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE 121 (270)
T ss_dssp HHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-
T ss_pred HHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC
Confidence 334455555566899999999999999887763
No 149
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.42 E-value=0.00017 Score=65.22 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=30.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCccch
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr 98 (363)
|.|.|+|||||||+|+.|++.++++..|+.++...
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 67899999999999999999995588899888743
No 150
>PLN02348 phosphoribulokinase
Probab=97.41 E-value=0.0014 Score=65.56 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
+-|.|.|++||||||++++|++.++
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4577899999999999999999885
No 151
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.40 E-value=0.00059 Score=59.12 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
++|.|.|||||||+++.|++.+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999987
No 152
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.40 E-value=0.00013 Score=78.59 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=35.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
+.|.|.|||||||||+|+.|+++++ +.++++|.++|+.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~-~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLG-YAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CcEeecCcEeHHH
Confidence 4688999999999999999999997 9999999998874
No 153
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.39 E-value=0.00039 Score=59.45 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
|+|+||+||||||+++.|++.++
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999875
No 154
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.39 E-value=0.00019 Score=59.45 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=26.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCc--eEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEA--IHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~--~~is~gdl 96 (363)
|+|.||||+||||+++.+++.++ . +.++.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-FPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-SEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-ccccccccccc
Confidence 68899999999999999999985 4 44555544
No 155
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.39 E-value=0.0002 Score=63.68 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=30.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLLRAEV 101 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdllr~~i 101 (363)
+.|+|+|+|||||||+|..+++.++ .+.+|+++.....++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~ 42 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEM 42 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHH
Confidence 4689999999999999999999974 266777665534433
No 156
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.38 E-value=0.00017 Score=74.60 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=35.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
+.|.|.||+||||||+++.|+++++ +.+++.|+++|+.
T Consensus 285 ~ii~i~G~sgsGKst~a~~la~~l~-~~~~d~g~~YR~~ 322 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAVAKKLG-LLYLDTGAMYRAV 322 (512)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-CeEecCCceehHH
Confidence 4689999999999999999999997 9999999998864
No 157
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.32 E-value=0.00023 Score=62.15 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=24.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
||+|+|+||+||||+++.|++. | ...+ .+..|..+..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g-~~~v--~E~ar~~~~~ 37 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-G-YPVV--PEYAREIIEE 37 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T--EEE----TTHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-C-CeEE--eecHHHHHHH
Confidence 7999999999999999999998 6 6655 5554555443
No 158
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.32 E-value=0.004 Score=59.53 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=26.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC--CceEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP--EAIHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~--~~~~is~gdl 96 (363)
|.|.|++||||||+++.|+..++ +...|+.+++
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 57899999999999999998764 2456676655
No 159
>PRK07429 phosphoribulokinase; Provisional
Probab=97.22 E-value=0.0042 Score=60.93 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=28.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC--CceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP--EAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~--~~~~is~gdl 96 (363)
++.|.|.|++||||||+++.|++.++ ....++.+++
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 45688899999999999999998875 1345666655
No 160
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.19 E-value=0.0041 Score=65.17 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=29.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
+-|.|.||+||||||+++.|+..++....|+.++.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 35778999999999999999999865667777765
No 161
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.18 E-value=0.00044 Score=62.69 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=30.8
Q ss_pred cccccEEEEcCCCCCHHHHHHHHHHHC--CCceEEecCccchhhh
Q psy11897 59 QVEIPTRFTGKPGTGKETQAQNILSKF--PEAIHISTGDLLRAEV 101 (363)
Q Consensus 59 ~~~~~i~l~G~pGSGKtT~~~~L~~~~--~~~~~is~gdllr~~i 101 (363)
+.|.-++|.|+|||||||++..+.+.+ ++++.|+.+++ +..+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhc
Confidence 345567789999999999999999997 56899986665 6555
No 162
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.17 E-value=0.00073 Score=64.09 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=25.9
Q ss_pred cCCCCCEEEEEeCCHHHHHHHHhhcCCCCCC
Q psy11897 286 DTKEPAIILYLDAPDDVILARLVKRGLTSGR 316 (363)
Q Consensus 286 ~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r 316 (363)
.....|+.|++|++.+.+.+|+.+|+...+.
T Consensus 207 ~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~ 237 (283)
T COG1072 207 LSDFFDFSIYVDADEELLEERYIERFLKFGL 237 (283)
T ss_pred ccccceEEEEecCCHHHHHHHHHHHHHhccc
Confidence 3446899999999999999999999865443
No 163
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.12 E-value=0.0021 Score=58.12 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..|+|+|++||||||+++.|+..+
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999875
No 164
>KOG3877|consensus
Probab=97.11 E-value=0.00099 Score=63.12 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=27.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
.-||+.|+-|||||++|+.|+++++ +.|..
T Consensus 72 kvI~VeGnI~sGK~klAKelAe~Lg-f~hfP 101 (393)
T KOG3877|consen 72 KVIVVEGNIGSGKTKLAKELAEQLG-FVHFP 101 (393)
T ss_pred eEEEEeCCcccCchhHHHHHHHHhC-Ccccc
Confidence 4589999999999999999999997 88765
No 165
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.10 E-value=0.0005 Score=66.41 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=33.7
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
|+-|+|.|++||||||+|..|+++++ +..+-..|.+|+.+..
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~-~~~vi~~D~~re~~R~ 133 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLG-IRSVIGTDSIREVMRK 133 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC-CCEEEechHHHHHHHH
Confidence 44588899999999999999999997 7644447776877765
No 166
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.03 E-value=0.0005 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=22.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.|||||||||+++.|+..+.
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccC
Confidence 578999999999999999999886
No 167
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=97.01 E-value=0.0027 Score=61.30 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=67.8
Q ss_pred CeEEECCeeEEeecCC--CCCccCCCCcCccccc-eEee-eeCCeEEEEEeCCC-CCCCCCceEEEEEEEEEcc-CCeEE
Q psy11897 148 GKFTIDKENFTISQNV--DVNHLHGGFKGFDKVI-WSTY-VDKDKVVMSHMSPD-GDEGYPGAVIATTTFQLTS-DNRLF 221 (363)
Q Consensus 148 g~~~~~G~~y~L~~n~--~~~~lHG~~~g~~~~~-w~~~-~~~~~vt~~~~~~~-~~~g~P~~~~~~v~y~L~~-~~~l~ 221 (363)
|.|.+.+....+..+. ..+.|||-......+. |.+. .+++..++.+...- ...+||+.++++.+++|.. .+.+.
T Consensus 42 g~f~f~~Gl~~~g~p~~~~~~~LHG~~~~~p~~~~w~~~~~d~~~~~l~l~g~~~~~~~fg~~y~a~~~i~L~~g~~~l~ 121 (293)
T cd09269 42 GCFAFHSGLLANGCPGPEDTHPLHGEFPCAPMDEAWLEVGEDASGDYLALTGEYEYVQGFGHHYLAQPSVTLRAGSALFD 121 (293)
T ss_pred ceEEEcCCccccCCCCCCCccCCcCCcCCCCccceEEEEEecCCCCEEEEEEEEEeeeccCccEEEEEEEEEeCCCCEEE
Confidence 6677777777777653 7788999955444444 7643 33433445444422 2368999999999999997 45666
Q ss_pred EEEEEE--eCCCeeecccccccccc
Q psy11897 222 ITMEAV--STKPTPINLTNHSYFNL 244 (363)
Q Consensus 222 i~~~~~--~~~~~p~~l~~H~yFnl 244 (363)
|+++++ +..++|++++.|++|-.
T Consensus 122 i~~~VtN~g~~p~p~~~~~H~nfg~ 146 (293)
T cd09269 122 IGMDVTNLSAQPMPLMYMCHMNYAY 146 (293)
T ss_pred EEEEEEECCCCCChhhEecccccCC
Confidence 666654 67899999999999965
No 168
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.98 E-value=0.00057 Score=74.78 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=35.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEV 101 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i 101 (363)
+.|.|-|||||||||+|++|+++++ +.+|++|.++|+.-
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~-~~~~~~g~~yRa~a 73 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG-AQCLNTGSFYRAFT 73 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHHHHHHH
Confidence 4689999999999999999999997 99999999987663
No 169
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.92 E-value=0.00094 Score=59.73 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=29.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC----CceEEecCccch
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP----EAIHISTGDLLR 98 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdllr 98 (363)
|.|.|+|||||||+|+.|++.++ +...|+.++..+
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 67899999999999999999852 367888887754
No 170
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=96.91 E-value=0.00096 Score=61.74 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=32.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
.|+|+|.|||||||.++.+.++.. .+.++.++-++..+.-
T Consensus 2 iI~i~G~~gsGKstva~~~~~~g~-~~~~~~~d~ik~~l~~ 41 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIENYN-AVKYQLADPIKEILAI 41 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCC-cEEEehhHHHHHHHHH
Confidence 589999999999999998877763 5559988887766643
No 171
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.89 E-value=0.0017 Score=57.93 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=28.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCC-ceEEecCccch
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPE-AIHISTGDLLR 98 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~-~~~is~gdllr 98 (363)
|+|-|+|-|||||+++.|++.++. ++|++++.++.
T Consensus 4 I~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 4 IILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 788999999999999999999964 46788776633
No 172
>PLN02165 adenylate isopentenyltransferase
Probab=96.84 E-value=0.0025 Score=62.44 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=28.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.|+|+||+||||||++..|++.++ ...|+.+..
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~-~eIIsaDs~ 77 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFP-SEIINSDKM 77 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcC-CceecCChh
Confidence 589999999999999999999996 777787643
No 173
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.82 E-value=0.00085 Score=60.52 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
|.|.|+|||||||+|+.|++.++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999885
No 174
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.00094 Score=60.98 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+-|+++|+|||||||.++.|++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 348889999999999999888765
No 175
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.72 E-value=0.002 Score=59.69 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=25.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTG 94 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~g 94 (363)
-++|.||||.||||+|..|++.++.-++..+|
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg 83 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSG 83 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEEC
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccc
Confidence 47899999999999999999999743444444
No 176
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.71 E-value=0.0011 Score=58.89 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+|+|+|+||+||||+++++.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 177
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.71 E-value=0.0013 Score=53.72 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
||+|+|++||||||+.++|.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 799999999999999999998764
No 178
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=96.67 E-value=0.0015 Score=69.98 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=35.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
.++|.|.||+||||||+++.|+++++ +.++++|.++|+.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~-~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALG-YHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhC-CeEecHHHhhhHH
Confidence 34789999999999999999999997 9999999887764
No 179
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.63 E-value=0.0018 Score=65.29 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=26.2
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceE
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIH 90 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~ 90 (363)
+..+|+|+|++||||||+++.|++.|+ ...
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g-~~~ 247 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFN-TTS 247 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhC-CCe
Confidence 445899999999999999999999997 443
No 180
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.63 E-value=0.0021 Score=56.82 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-|+|.|+|||||||+++.|+..+
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58889999999999999999876
No 181
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.63 E-value=0.0019 Score=54.62 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=22.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.|+||+|||++++.+++.++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh
Confidence 378999999999999999999985
No 182
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.61 E-value=0.0021 Score=62.54 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=28.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGD 95 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gd 95 (363)
-|+|+||+||||||++..|+++++ ...||.+.
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~~-~~iis~Ds 37 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRLN-GEIISADS 37 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhCC-CcEEeccc
Confidence 488899999999999999999996 77788775
No 183
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.0052 Score=53.25 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.3
Q ss_pred EcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 67 TGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 67 ~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.|..||||||+++.|+++++ +..|.-+++
T Consensus 1 MGVsG~GKStvg~~lA~~lg-~~fidGDdl 29 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG-AKFIDGDDL 29 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC-Cceeccccc
Confidence 38899999999999999997 888876655
No 184
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.59 E-value=0.002 Score=60.99 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=22.5
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
....++|.||||+||||+|+.+++.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998864
No 185
>KOG0744|consensus
Probab=96.58 E-value=0.0028 Score=61.42 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-|.+-||||.|||++||.|++++-
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhhe
Confidence 466699999999999999999873
No 186
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.54 E-value=0.003 Score=62.71 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=37.4
Q ss_pred cccccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccchhhhhccCcchhHHHHHH
Q psy11897 59 QVEIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLLRAEVRTGNTRGRNIEAIM 115 (363)
Q Consensus 59 ~~~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdllr~~i~~~~~~G~~l~~~~ 115 (363)
++|.-+.|.||||+|||.+|+.+++.++ +++.++.++++...+-+ -++.++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGE---sEk~IR~~F 200 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGE---PGKLIRQRY 200 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCc---HHHHHHHHH
Confidence 4555677799999999999999999997 24667777664333322 344555444
No 187
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.53 E-value=0.0025 Score=61.35 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=28.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGD 95 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gd 95 (363)
|+|+||+|||||+++..|++.++ ...||.+.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~-~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLN-AEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCC-CcEEEech
Confidence 78999999999999999999996 77888775
No 188
>KOG3220|consensus
Probab=96.48 E-value=0.0017 Score=58.87 Aligned_cols=50 Identities=26% Similarity=0.239 Sum_probs=40.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHH
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIM 115 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~ 115 (363)
+-++|..||||||+++.+. ++| +..|.++-+-|..+.++++....+.+..
T Consensus 4 VGLTGgiatGKStVs~~f~-~~G-~~vIDaD~vaR~vv~PG~p~~~~ive~F 53 (225)
T KOG3220|consen 4 VGLTGGIATGKSTVSQVFK-ALG-IPVIDADVVAREVVEPGTPAYRRIVEAF 53 (225)
T ss_pred EEeecccccChHHHHHHHH-HcC-CcEecHHHHHHHHhcCCChHHHHHHHHh
Confidence 4579999999999999665 887 9999999887888888766666655543
No 189
>PLN02840 tRNA dimethylallyltransferase
Probab=96.46 E-value=0.0037 Score=63.09 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=28.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGD 95 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gd 95 (363)
-|+|.||+||||||++..|+++++ ...|+.+.
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~-~~iis~Ds 54 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLN-GEIISADS 54 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC-CCeEeccc
Confidence 488999999999999999999996 66777654
No 190
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.43 E-value=0.0031 Score=64.29 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=33.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
|.-|+|.|+|||||||++..|+..++ +.++-..|.+|..+..
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg-~~~ii~tD~iR~~lr~ 296 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLG-ITRIVSTDAVREVLRA 296 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC-CcEEeehhHHHHHHHh
Confidence 44688899999999999999999997 8766556665665544
No 191
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.41 E-value=0.0023 Score=63.35 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
++|.|||||||||+++.|++.++
T Consensus 81 l~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 81 LYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 68899999999999999999885
No 192
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.37 E-value=0.0027 Score=54.90 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
|.||+|+|+.||||||+++.|....
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCC
Confidence 4589999999999999999997654
No 193
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0035 Score=66.31 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
-+||.||||.|||.+++.+|+..+ .++.+|.|-.
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGv 386 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGV 386 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcc
Confidence 499999999999999999999986 4788898876
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.36 E-value=0.0031 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.|+||+||||+++.+++.+
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999876
No 195
>KOG0738|consensus
Probab=96.35 E-value=0.017 Score=57.45 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=26.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCC-ceEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPE-AIHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~-~~~is~gdl 96 (363)
++|.||||+|||.+|+.++..-+. ++-||...+
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 667999999999999999999862 444665555
No 196
>PF13245 AAA_19: Part of AAA domain
Probab=96.33 E-value=0.0032 Score=48.40 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=14.5
Q ss_pred EEEEcCCCCCHHHHH-HHHHHH
Q psy11897 64 TRFTGKPGTGKETQA-QNILSK 84 (363)
Q Consensus 64 i~l~G~pGSGKtT~~-~~L~~~ 84 (363)
.+|.|||||||||.+ +.++..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 455999999999554 444433
No 197
>PF05729 NACHT: NACHT domain
Probab=96.32 E-value=0.0028 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
++|.|+||+||||++++++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6789999999999999998766
No 198
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.30 E-value=0.017 Score=56.81 Aligned_cols=41 Identities=32% Similarity=0.464 Sum_probs=34.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCC---ceEEecCccchhhhhc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPE---AIHISTGDLLRAEVRT 103 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~---~~~is~gdllr~~i~~ 103 (363)
=|+|.||||+|||-+|--+++.+|. +..||.++++..+++.
T Consensus 67 giLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK 110 (450)
T COG1224 67 GILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK 110 (450)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccH
Confidence 3677999999999999999988862 6778888888888776
No 199
>PRK06761 hypothetical protein; Provisional
Probab=96.29 E-value=0.0035 Score=60.18 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=22.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.|+|.|+|||||||+++.|++++.
T Consensus 5 lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999999985
No 200
>PHA00729 NTP-binding motif containing protein
Probab=96.28 E-value=0.0034 Score=58.31 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..|+|+|+||+||||+|..|++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 369999999999999999999986
No 201
>KOG1594|consensus
Probab=96.28 E-value=0.011 Score=55.59 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=53.9
Q ss_pred cCccccc-eEeeee--------CCeEEEEEeC-CCCCCCCCceEEEEEEEEEccCC-eEEEEEEEEeCCCeeeccccccc
Q psy11897 173 KGFDKVI-WSTYVD--------KDKVVMSHMS-PDGDEGYPGAVIATTTFQLTSDN-RLFITMEAVSTKPTPINLTNHSY 241 (363)
Q Consensus 173 ~g~~~~~-w~~~~~--------~~~vt~~~~~-~~~~~g~P~~~~~~v~y~L~~~~-~l~i~~~~~~~~~~p~~l~~H~y 241 (363)
|||.|.. |+++.. ...|.|.+.+ ++...-||+.|++..+..|.++. .+.+.++++++++.-|+...|+|
T Consensus 91 HGFaRn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtY 170 (305)
T KOG1594|consen 91 HGFARNRFWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTY 170 (305)
T ss_pred cccccceeeEeccCCCCCCcCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeee
Confidence 3444544 996543 1467888877 55568999999999999998433 44455556677899999999999
Q ss_pred cccCC
Q psy11897 242 FNLAG 246 (363)
Q Consensus 242 Fnl~g 246 (363)
|..+.
T Consensus 171 f~vsd 175 (305)
T KOG1594|consen 171 FRVSD 175 (305)
T ss_pred Eeecc
Confidence 98753
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.26 E-value=0.0031 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-++|.|+||+||||+++++++.+
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 37889999999999999999976
No 203
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.22 E-value=0.0042 Score=60.90 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=25.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceE
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIH 90 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~ 90 (363)
..+|+|+|+|||||||+++.|+..++ ...
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~-~~~ 190 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFN-TTS 190 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC-CCE
Confidence 56899999999999999999999986 544
No 204
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.20 E-value=0.0026 Score=59.64 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.6
Q ss_pred EEcCCCCCHHHHHHHHHHHCC
Q psy11897 66 FTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 66 l~G~pGSGKtT~~~~L~~~~~ 86 (363)
++||+||||||.|+.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 589999999999999998875
No 205
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.14 E-value=0.0039 Score=57.42 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=22.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
..++|+||+||||||+.+.|-. +-.++.|.+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~----LE~~~~G~I 59 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG----LEEPDSGSI 59 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC----CcCCCCceE
Confidence 4799999999999999997732 334444543
No 206
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.13 E-value=0.0047 Score=56.25 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=22.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
|.+|.|+|++||||||+++++.+.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34789999999999999999988753
No 207
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.13 E-value=0.006 Score=52.12 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
..-|+|.|+.||||||+++.+++.++
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999999996
No 208
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.12 E-value=0.012 Score=62.85 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=29.9
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCccchhhhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDLLRAEVR 102 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdllr~~i~ 102 (363)
+.-|+|.|.|||||||+++.|++++. .+..|+ +|.+|..+.
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~-~D~~r~~l~ 504 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLD-GDNVRHGLN 504 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEc-ChhhhhccC
Confidence 34578899999999999999998862 146666 444466543
No 209
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.12 E-value=0.0059 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+.-|+|.|+|||||||+++.|...+
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999999876
No 210
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.09 E-value=0.0073 Score=61.00 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=26.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTG 94 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~g 94 (363)
..|+|+||||+||||+++.|++.++ ...+...
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk~l~-~~fi~vD 82 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLAN-APFIKVE 82 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-Chheeec
Confidence 5799999999999999999999986 6555543
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.09 E-value=0.0041 Score=56.52 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..|+|.||+|+||||.+.+|+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 357889999999999999998766
No 212
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.06 E-value=0.0062 Score=61.48 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=27.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTG 94 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~g 94 (363)
..|+|+||||+||||+++.|++.++ ...+.+.
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l~-~~fi~vd 79 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLAN-APFIKVE 79 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-CeEEEee
Confidence 4799999999999999999999996 6665544
No 213
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.05 E-value=0.0049 Score=54.10 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=28.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCccchhhhhc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDLLRAEVRT 103 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdllr~~i~~ 103 (363)
-|.|+|.|||||||+|+.|.+++. ..+.|. ||-+|..+..
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD-gD~lR~~l~~ 47 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLD-GDNLRHGLNA 47 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE-HHHHCTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec-CcchhhccCC
Confidence 378899999999999999987762 255555 4444655543
No 214
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.05 E-value=0.0066 Score=63.88 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=30.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCc------eEEecCccchhhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEA------IHISTGDLLRAEV 101 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~------~~is~gdllr~~i 101 (363)
+..|+|+|.|||||||+++.|++.++ . ..+. +|.++..+
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~-~~~g~~~~~lD-~D~vr~~l 436 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLM-EMRGRPVTLLD-GDVVRKHL 436 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhh-hccCceEEEeC-CcHHHHhc
Confidence 34689999999999999999999996 4 5554 55555544
No 215
>PLN02748 tRNA dimethylallyltransferase
Probab=96.03 E-value=0.013 Score=60.13 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=28.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGD 95 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gd 95 (363)
.|+|+||+||||||++..|++.++ ...|+.+.
T Consensus 24 ~i~i~GptgsGKs~la~~la~~~~-~eii~~Ds 55 (468)
T PLN02748 24 VVVVMGPTGSGKSKLAVDLASHFP-VEIINADS 55 (468)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-eeEEcCch
Confidence 588999999999999999999996 77777553
No 216
>PRK13695 putative NTPase; Provisional
Probab=96.02 E-value=0.005 Score=54.39 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
|||+|+|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999987654
No 217
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.99 E-value=0.0053 Score=52.05 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=19.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~ 83 (363)
||+|+|++||||||+..++..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998864
No 218
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.99 E-value=0.0049 Score=60.91 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~ 83 (363)
-++|+||+||||||+.+.|+-
T Consensus 33 f~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999998873
No 219
>PF13173 AAA_14: AAA domain
Probab=95.97 E-value=0.0088 Score=50.14 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=27.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC---CceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP---EAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~---~~~~is~gdl 96 (363)
-++|.||.|+||||+++++++.+. ++..++..+.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 367899999999999999998752 4777776665
No 220
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.95 E-value=0.0056 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.9
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+|+|+|++||||||++..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998754
No 221
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.95 E-value=0.0068 Score=56.88 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+.+++|+|++||||||++..|...+
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 34589999999999999888877655
No 222
>KOG2004|consensus
Probab=95.93 E-value=0.0069 Score=64.12 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=30.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
+-+||.||||.|||.+++.+++.+| .++.+|+|-+
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 439 KILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 3599999999999999999999996 3778898866
No 223
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.92 E-value=0.0063 Score=49.72 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~ 83 (363)
||+|+|+|||||||+...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 224
>KOG1533|consensus
Probab=95.92 E-value=0.0035 Score=58.22 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-+++|||||||||.|.-+.+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 3679999999999997665544
No 225
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.92 E-value=0.0054 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
|+|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999988773
No 226
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.89 E-value=0.0099 Score=52.50 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=23.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC---C-CceEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF---P-EAIHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~---~-~~~~is~gdl 96 (363)
++|.|+||+|||+++.+++... + ....++..+-
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5789999999999998764421 1 2667776655
No 227
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.88 E-value=0.0056 Score=53.16 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...|++|+|++||||||+.++|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3568999999999999999988654
No 228
>CHL00181 cbbX CbbX; Provisional
Probab=95.87 E-value=0.0077 Score=58.02 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=21.7
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
...++|.||||+||||+|+.+++.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4468899999999999999998764
No 229
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.86 E-value=0.0068 Score=52.04 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=19.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~ 83 (363)
||+|+|+|||||||++.++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998865
No 230
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.86 E-value=0.0072 Score=59.13 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=26.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
...|+|.|+||+||||+++.|++.++ ...+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~-~~~~r 94 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLN-WPCVR 94 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHC-CCeEE
Confidence 34799999999999999999999996 55443
No 231
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.85 E-value=0.007 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
|+|.||+||||||.+..|...++
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 68899999999999998887774
No 232
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.84 E-value=0.0067 Score=51.88 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|.||+||||++.++...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999988754
No 233
>PHA03136 thymidine kinase; Provisional
Probab=95.84 E-value=0.1 Score=51.93 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=34.0
Q ss_pred cCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHH
Q psy11897 286 DTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQ 340 (363)
Q Consensus 286 ~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~ 340 (363)
....||.+|+|+++.+++.+||.+|+..... ......++|....+..--...
T Consensus 188 ~~p~pD~IIyL~l~~e~~~~RI~kRgR~~E~---I~~~YL~~L~~~Y~~~~nt~~ 239 (378)
T PHA03136 188 DEPHGGNIVIMDLDECEHAERIIARGRPGEA---IDVRFLCALHNIYICFMNTIT 239 (378)
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHcCCCccC---CCHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999753321 223445555554444433333
No 234
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.81 E-value=0.0072 Score=51.63 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
+||+++|+|||||||++.++..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998864
No 235
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=95.80 E-value=0.16 Score=48.77 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=21.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
++|+|.+||||||-++ ..+.+| .+.+.
T Consensus 4 vIiTGlSGaGKs~Al~-~lED~G-y~cvD 30 (284)
T PF03668_consen 4 VIITGLSGAGKSTALR-ALEDLG-YYCVD 30 (284)
T ss_pred EEEeCCCcCCHHHHHH-HHHhcC-eeEEc
Confidence 6779999999999888 557776 66664
No 236
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.77 E-value=0.0073 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||+|+|.||+||||+..++...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999988754
No 237
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.77 E-value=0.0074 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+++.|+|||||||++..++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999888764
No 238
>PRK09087 hypothetical protein; Validated
Probab=95.77 E-value=0.0098 Score=55.26 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=27.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.++|.|++||||||+++.+++..+ ...++..++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~-~~~i~~~~~ 78 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSD-ALLIHPNEI 78 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC-CEEecHHHc
Confidence 479999999999999999999886 777776543
No 239
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.75 E-value=0.011 Score=53.48 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=25.9
Q ss_pred cccEEEEcCCCCCHHHHHHHH----HHHCCCceEEecCccch
Q psy11897 61 EIPTRFTGKPGTGKETQAQNI----LSKFPEAIHISTGDLLR 98 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L----~~~~~~~~~is~gdllr 98 (363)
+.+|-+.|||||||||+..++ .++|. +-.|. +|+++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~-~aVI~-~Di~t 52 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYK-IAVIT-GDIYT 52 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCC-eEEEe-ceeec
Confidence 357888999999999997665 45564 55554 66644
No 240
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.74 E-value=0.008 Score=51.52 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
+||+|+|++|+||||++.+|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999998864
No 241
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.74 E-value=0.008 Score=49.40 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.6
Q ss_pred cEEEEcCCCCCHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~ 82 (363)
.++|.||+||||||+++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58899999999999999887
No 242
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.73 E-value=0.0075 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|.+||||||+..+|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999888654
No 243
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.73 E-value=0.0088 Score=56.15 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.|++||||||+++.++..+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 478899999999999999998874
No 244
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.72 E-value=0.0094 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.2
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-+...+|.|.||+||||+...|++.
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHc
Confidence 3446778999999999999999876
No 245
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.71 E-value=0.008 Score=51.82 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|++||||||+..+|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999988764
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.71 E-value=0.0093 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
++|.|+||+||||++..++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6789999999999999887664
No 247
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.68 E-value=0.011 Score=56.10 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.+++|.|+||+|||++++.|++.++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999875
No 248
>PLN02796 D-glycerate 3-kinase
Probab=95.68 E-value=0.013 Score=57.77 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCC----ceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPE----AIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~----~~~is~gdl 96 (363)
+..|.|+|++||||||+++.|...+.. ...|+.++.
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 346888999999999999999987741 455676665
No 249
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.67 E-value=0.0095 Score=51.66 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=21.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
...||+|+|+||+||||++.++..
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~ 25 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSE 25 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhh
Confidence 346999999999999999998864
No 250
>PRK06620 hypothetical protein; Validated
Probab=95.67 E-value=0.011 Score=54.51 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=23.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
.++|.|||||||||+++.+++..+ ...++
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~ 74 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSN-AYIIK 74 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccC-CEEcc
Confidence 478999999999999998888775 54443
No 251
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.61 E-value=0.011 Score=56.88 Aligned_cols=24 Identities=42% Similarity=0.663 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|.||||+||||+|+.+++.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999998777654
No 252
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.01 Score=59.98 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=27.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC----CCceEEecCccchh
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF----PEAIHISTGDLLRA 99 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~----~~~~~is~gdllr~ 99 (363)
.++|+||+||||||++.+|+..+ +.-+.+...|..|.
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 47789999999999999999755 21355666666454
No 253
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.56 E-value=0.011 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+++|+|||||||++.++...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999987543
No 254
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.56 E-value=0.0097 Score=50.85 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.||+|+|.||+||||++.++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999988874
No 255
>PRK15453 phosphoribulokinase; Provisional
Probab=95.55 E-value=0.0099 Score=57.05 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=25.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdl 96 (363)
-|.|.|.|||||||+++.|++.++ +...|+.++.
T Consensus 7 iI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~y 44 (290)
T PRK15453 7 IIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSF 44 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 488899999999999999998774 1344554443
No 256
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.54 E-value=0.015 Score=57.61 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
+.-++|.||||+||||+++.++...+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC
Confidence 34589999999999999999999885
No 257
>PHA02244 ATPase-like protein
Probab=95.54 E-value=0.013 Score=58.18 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=28.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
...+++|.||||+||||+++.|+...+ ...+.+..+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg-~pfv~In~l 153 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALD-LDFYFMNAI 153 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhC-CCEEEEecC
Confidence 445799999999999999999999886 555554443
No 258
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.54 E-value=0.0095 Score=58.56 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=24.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
-++|+||+||||||+.+.|+- +..++.|++
T Consensus 31 f~vllGPSGcGKSTlLr~IAG----Le~~~~G~I 60 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAG----LEEPTSGEI 60 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhC----CCCCCCceE
Confidence 588999999999999998873 455566654
No 259
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.53 E-value=0.014 Score=58.68 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=27.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
+.-|+|.||||+|||++++.++...+ .++.++..++
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 34588999999999999999999875 2444554444
No 260
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.48 E-value=0.011 Score=50.33 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=19.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~ 83 (363)
||+++|+|||||||+..++..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999988874
No 261
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.46 E-value=0.015 Score=43.06 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=18.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-.+|.|+.||||||+...+.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3778999999999999877543
No 262
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.45 E-value=0.01 Score=54.38 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q psy11897 64 TRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~ 84 (363)
|+|.|+|||||||..+.+.+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 578999999999999999998
No 263
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.44 E-value=0.023 Score=50.46 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=24.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC-CceEEecC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP-EAIHISTG 94 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~g 94 (363)
++|+|++|||||+.|.+++...+ ...++++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 67899999999999999987753 24555433
No 264
>PF13479 AAA_24: AAA domain
Probab=95.44 E-value=0.014 Score=53.57 Aligned_cols=32 Identities=34% Similarity=0.555 Sum_probs=25.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
+.+++|.|+||+||||++..+ +....|.+..-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCC
Confidence 468999999999999999887 44667775544
No 265
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.43 E-value=0.018 Score=58.22 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=24.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
.++|.||||+||||+|+.|++.++ ...+.
T Consensus 110 ~iLl~Gp~GtGKT~lAr~lA~~l~-~pf~~ 138 (412)
T PRK05342 110 NILLIGPTGSGKTLLAQTLARILD-VPFAI 138 (412)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC-CCcee
Confidence 589999999999999999999885 54443
No 266
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.42 E-value=0.015 Score=57.87 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-.+|-||||+||||+++.|+...+
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~ 73 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTN 73 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhC
Confidence 367899999999999999999886
No 267
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.012 Score=55.23 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.-++|+||+||||||+.+.++-
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998864
No 268
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.41 E-value=0.013 Score=50.19 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
||+|+|.+||||||++.++...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999888754
No 269
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.024 Score=55.06 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=34.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIM 115 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~ 115 (363)
.|+|+||.|||||.+|+.|++.++ +..-- -|. ..+.+-+=.|..+++++
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~Ln-VPFai-ADA--TtLTEAGYVGEDVENil 147 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILN-VPFAI-ADA--TTLTEAGYVGEDVENIL 147 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC-CCeee-ccc--cchhhccccchhHHHHH
Confidence 589999999999999999999996 55432 322 22333345667666665
No 270
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.40 E-value=0.011 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||+++|++||||||++.++...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999888653
No 271
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.016 Score=54.42 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=34.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
.-|+|-|+||.||||+|.-|+.++| +-++-..|.||+.+.+
T Consensus 90 ~IILIGGasGVGkStIA~ElA~rLg-I~~visTD~IREvlR~ 130 (299)
T COG2074 90 LIILIGGASGVGKSTIAGELARRLG-IRSVISTDSIREVLRK 130 (299)
T ss_pred eEEEecCCCCCChhHHHHHHHHHcC-CceeecchHHHHHHHH
Confidence 3455678899999999999999997 9887777777888876
No 272
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.38 E-value=0.013 Score=52.09 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=26.1
Q ss_pred cccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 59 QVEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 59 ~~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
+....|.|+||+||||||+.+.++.- +....|.+
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L----isp~~G~l 60 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL----ISPTSGTL 60 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc----cCCCCceE
Confidence 34568999999999999999988763 33455654
No 273
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.38 E-value=0.013 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
+||+|+|.+|+||||++.++..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999987764
No 274
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.36 E-value=0.015 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|+|++||||||+++.|....+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 588999999999999998887654
No 275
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.35 E-value=0.015 Score=53.58 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=25.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC-----CCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF-----PEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~-----~~~~~is~gdl 96 (363)
.++|.|+||+|||++++.++... . +..++..+.
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~-~~~i~~~~~ 81 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRN-ARYLDAASP 81 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCc-EEEEehHHh
Confidence 58899999999999999998764 3 556665443
No 276
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.33 E-value=0.012 Score=50.27 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||+++|++||||||++.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999988754
No 277
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=95.33 E-value=0.014 Score=49.55 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
||+|+|++|+||||+..++...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999888754
No 278
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.33 E-value=0.016 Score=51.59 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC-----CceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP-----EAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~-----~~~~is~gdl 96 (363)
-++|+||+|+|||.+++.|++.+. .++.+.++.+
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 467899999999999999999986 2445554444
No 279
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=95.33 E-value=0.012 Score=50.81 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||+|+|++||||||+..++...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~ 24 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADD 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988643
No 280
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.32 E-value=0.012 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=17.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|.|++|+||||+++.+.+.+.
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478899999999999998776653
No 281
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=95.30 E-value=0.014 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
++|+++|++||||||+..+|...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 58999999999999999988754
No 282
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.29 E-value=0.014 Score=54.30 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~ 82 (363)
.-+.|+||+||||||+...|.
T Consensus 32 e~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368899999999999999774
No 283
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.26 E-value=0.015 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...||+|+|++||||||+..+|...
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhc
Confidence 4569999999999999999999753
No 284
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.24 E-value=0.016 Score=52.91 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|.|+||+||||+++.++...
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998654
No 285
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.23 E-value=0.015 Score=53.19 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=19.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|.||||+|||+++++|..-++
T Consensus 24 ~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 24 HLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -EEEES-CCCTHHHHHHHHHHCS-
T ss_pred CeEEECCCCCCHHHHHHHHHHhCC
Confidence 578999999999999999998765
No 286
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.23 E-value=0.016 Score=55.73 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=22.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.||||+||||+++.++..++
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999986
No 287
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.021 Score=53.29 Aligned_cols=56 Identities=18% Similarity=0.395 Sum_probs=37.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLV 121 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~ 121 (363)
..+.|+|++||||||+.+.|.. ++-++.|+++-.-.......|++++.+..+=|++
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng----l~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmI 86 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG----LVDPTSGEILFNGVQITKLKGKELRKLRRDIGMI 86 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc----ccCCCcceEEecccchhccchHHHHHHHHhceeE
Confidence 3689999999999999998865 4446667553222222334667777776554544
No 288
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=95.19 E-value=0.015 Score=49.63 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+++|+||+||||++.++...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC
Confidence 58999999999999999988754
No 289
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.18 E-value=0.014 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=22.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.||+|+|++||||||++.++.+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 699999999999999999998765
No 290
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.17 E-value=0.016 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
+||+++|.+||||||++.++..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998865
No 291
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.17 E-value=0.015 Score=50.39 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|++|+||||+..++...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 38999999999999999877643
No 292
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.14 E-value=0.018 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
+|+|+|++|+||||+..+|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~ 24 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcc
Confidence 588999999999999999987653
No 293
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.11 E-value=0.019 Score=56.16 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.||||+||||+++.++..++
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhC
Confidence 578999999999999999999986
No 294
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.11 E-value=0.017 Score=50.58 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.||+|+|.||+||||+..++..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999998874
No 295
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.10 E-value=0.054 Score=53.82 Aligned_cols=41 Identities=32% Similarity=0.505 Sum_probs=31.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCC---ceEEecCccchhhhhc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPE---AIHISTGDLLRAEVRT 103 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~---~~~is~gdllr~~i~~ 103 (363)
=|+|.||||+|||.++-.|++.+|. +..++.++++..+++.
T Consensus 52 ~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK 95 (398)
T PF06068_consen 52 AILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK 95 (398)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred EEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence 3667999999999999999988642 7788888887777765
No 296
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.10 E-value=0.019 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
--|+|+|++||||||+++.|.+..+
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred eEEEEECCCccccchHHHHHhhhcc
Confidence 3588999999999999999999886
No 297
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.10 E-value=0.018 Score=51.39 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-+.|+|++||||||++++|...+.
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHh
Confidence 478899999999999999987763
No 298
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.09 E-value=0.022 Score=58.97 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=27.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCce--EEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAI--HISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~--~is~gdl 96 (363)
+.-|+|.||||+|||++|+.++..++ +. .++.+.+
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~-~~~~~l~~~~l 295 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQ-LPLLRLDVGKL 295 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC-CCEEEEEhHHh
Confidence 34588899999999999999999985 44 4444443
No 299
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.09 E-value=0.013 Score=61.20 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-+||+||||+||||+++.|++.+.
T Consensus 105 IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 105 ILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 488899999999999999987663
No 300
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.06 E-value=0.025 Score=57.03 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=24.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEE
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHI 91 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~i 91 (363)
+.-++|.||||+|||++++.++...+ ...+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~-~~fi 208 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTT-ATFI 208 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC-CCEE
Confidence 34588899999999999999999875 4433
No 301
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=95.05 E-value=0.017 Score=49.28 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~ 83 (363)
||+|+|+|||||||+..++..
T Consensus 2 ki~liG~~~~GKSsli~~l~~ 22 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMY 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999988753
No 302
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.04 E-value=0.022 Score=57.60 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceE
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIH 90 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~ 90 (363)
.++|.||||+|||++++.|++.++ ...
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~~l~-~pf 144 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLARILN-VPF 144 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHHhcC-CCe
Confidence 688999999999999999999985 444
No 303
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.04 E-value=0.016 Score=48.62 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
..+.|+|++||||||+.+.|+..+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 4688999999999999999877663
No 304
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.02 E-value=0.018 Score=49.96 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.||+|+|.|||||||+..++..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998864
No 305
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.02 E-value=0.017 Score=54.57 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=22.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.-+|++||+||||||..+++-. ++.-+.|++
T Consensus 28 ef~vliGpSGsGKTTtLkMINr----Liept~G~I 58 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINR----LIEPTSGEI 58 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhc----ccCCCCceE
Confidence 3588999999999999998743 344454543
No 306
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.02 E-value=0.026 Score=53.99 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=28.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.+.|.||||-||||+|..++..++--.++..|..
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~ 87 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPA 87 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccc
Confidence 6889999999999999999999984455666655
No 307
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.02 E-value=0.02 Score=49.83 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=23.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
=++|.|++||||||++..|.++ + ...++ +|.
T Consensus 16 gvLi~G~sG~GKStlal~L~~~-g-~~lva-DD~ 46 (149)
T cd01918 16 GVLITGPSGIGKSELALELIKR-G-HRLVA-DDR 46 (149)
T ss_pred EEEEEcCCCCCHHHHHHHHHHc-C-CeEEE-CCE
Confidence 4778999999999999888876 3 44444 554
No 308
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.01 E-value=0.016 Score=58.54 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
=|++.||||+||||.|+.|++-|.
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHH
Confidence 378899999999999999999885
No 309
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.01 E-value=0.017 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
+||+|+|++|+||||+..++..
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999988864
No 310
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.01 E-value=0.02 Score=49.70 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...||+|+|.||+||||++.++...
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3469999999999999999988653
No 311
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.01 E-value=0.019 Score=49.50 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.||+|+|++|+||||+..++..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999988864
No 312
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=95.01 E-value=0.018 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|.+|+||||++.++...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988653
No 313
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=94.98 E-value=0.018 Score=49.12 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
||+|+|++||||||+..++...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 6899999999999999988754
No 314
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=94.98 E-value=0.019 Score=49.91 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||+|+|++||||||+..++...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999888753
No 315
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=94.98 E-value=0.02 Score=48.88 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+++|++||||||++.+|...
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999888643
No 316
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.97 E-value=0.019 Score=49.38 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.|.|+|+.+|||||+++.|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999997665
No 317
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=94.96 E-value=0.017 Score=48.52 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
||+|+|.+|+||||+..++....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 79999999999999999987653
No 318
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.96 E-value=0.017 Score=53.51 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=23.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTG 94 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~g 94 (363)
+.+++|.|+||+||||+++.|..+ ...|+..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~---~~~~~~d 42 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK---TLVLSFD 42 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC---CEEEecc
Confidence 457999999999999999988632 4455544
No 319
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.03 Score=57.80 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=33.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccchhhhhccCcchhHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLLRAEVRTGNTRGRNIEAIM 115 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdllr~~i~~~~~~G~~l~~~~ 115 (363)
..++|.||||+|||++|+.++...+ +++.+...+++...+-. ..+.++.+.
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGe---sek~ir~~F 328 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGE---SEKNIRELF 328 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccch---HHHHHHHHH
Confidence 3688899999999999999999553 15555544443333322 344555544
No 320
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.94 E-value=0.019 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+++|+++|.+|+||||+...|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 358999999999999999988754
No 321
>KOG0651|consensus
Probab=94.93 E-value=0.041 Score=53.28 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=35.2
Q ss_pred cEE-EEcCCCCCHHHHHHHHHHHCC-CceEEecCccchhhhhccCcchhHHHHHH
Q psy11897 63 PTR-FTGKPGTGKETQAQNILSKFP-EAIHISTGDLLRAEVRTGNTRGRNIEAIM 115 (363)
Q Consensus 63 ~i~-l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdllr~~i~~~~~~G~~l~~~~ 115 (363)
|+| |-||||.|||.||+.++..++ |.+.++++.+....+-+ -+..+++..
T Consensus 167 kg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE---saRlIRemf 218 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE---SARLIRDMF 218 (388)
T ss_pred ceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc---HHHHHHHHH
Confidence 444 489999999999999999997 45566777664444433 455555544
No 322
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.92 E-value=0.021 Score=50.21 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.|.|+|++||||||++++|...+.
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 477899999999999999998763
No 323
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.91 E-value=0.022 Score=59.18 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
+..++|.||||+|||++++.++..++
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 34689999999999999999999874
No 324
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.91 E-value=0.021 Score=49.87 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+.|+|++||||||++++|.+.+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998875
No 325
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.91 E-value=0.04 Score=50.62 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=38.2
Q ss_pred cEEEEcCCCCCHHHHHHHHH-----H-HCCCceEEecCccchhhhhccCcchhHHHHHHHhCCc
Q psy11897 63 PTRFTGKPGTGKETQAQNIL-----S-KFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGL 120 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~-----~-~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~ 120 (363)
-++|.|+||||||++|.+++ + ..+ ...++..+-.+..+..-...|-.+..+..+|.+
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~-vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l 83 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEK-VLYVSFEEPPEELIENMKSFGWDLEEYEDSGKL 83 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT---EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCc-EEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCE
Confidence 36789999999999997654 2 344 788888776444444444577778887777654
No 326
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.90 E-value=0.02 Score=49.35 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.9
Q ss_pred cccEEEEcCCCCCHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..||+|+|++||||||+..++..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999988743
No 327
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.90 E-value=0.019 Score=49.31 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||+++|+|||||||+..++...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988643
No 328
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.90 E-value=0.022 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+..+
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998654
No 329
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.88 E-value=0.022 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|++||||||+++.|+.-+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998654
No 330
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.86 E-value=0.021 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|.+|+||||++.++...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~ 23 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQG 23 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999988643
No 331
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.86 E-value=0.024 Score=51.14 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+|.||||+||||.+..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 6789999999998777666655
No 332
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.85 E-value=0.026 Score=58.73 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|.|||||||||..+.|++.++
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 366799999999999999999996
No 333
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.85 E-value=0.024 Score=47.10 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
||++.|++|+||||++..|+..+
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l 23 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYL 23 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999888765
No 334
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.85 E-value=0.02 Score=55.98 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..|+|+||+||||||.+..|+..+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 467889999999999999998765
No 335
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.85 E-value=0.026 Score=53.35 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=26.4
Q ss_pred CCccccccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 56 IPLQVEIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 56 ~~~~~~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.|+...-|++|+|++|+||||+++.|.....
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4565667999999999999999999997764
No 336
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.84 E-value=0.022 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..||+|+|++||||||+..++..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998864
No 337
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=94.84 E-value=0.022 Score=49.53 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.||+++|++|+||||+..++..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998754
No 338
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.82 E-value=0.017 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
++|.|+||.||||+++.|++..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 67899999999999999999997
No 339
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.82 E-value=0.024 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|+.||||||+++.|+--+
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999887543
No 340
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=94.80 E-value=0.021 Score=51.43 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..||+|+|++|+||||++.++..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~ 28 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFAD 28 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 36999999999999999988864
No 341
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.80 E-value=0.022 Score=47.75 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q psy11897 64 TRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~ 84 (363)
|+|+|++||||||+.++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999988653
No 342
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.79 E-value=0.024 Score=51.73 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+.-+
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 368999999999999999997554
No 343
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.79 E-value=0.023 Score=51.10 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||+|+|++|+||||+..++...
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~ 23 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 38999999999999999988753
No 344
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.79 E-value=0.022 Score=48.60 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
||+++|.+||||||+..++...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 6899999999999999988754
No 345
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.78 E-value=0.022 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+.-+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999987543
No 346
>KOG0739|consensus
Probab=94.77 E-value=0.034 Score=53.68 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=37.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccchhhhhccCcchhHHHHH
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLLRAEVRTGNTRGRNIEAI 114 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdllr~~i~~~~~~G~~l~~~ 114 (363)
|+|.||||.|||.+++.++..-+ .++.+|.+||+..-+-+.+.+-.++-++
T Consensus 169 iLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFem 220 (439)
T KOG0739|consen 169 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEM 220 (439)
T ss_pred EEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHH
Confidence 77899999999999999997764 3677899999776665433443333333
No 347
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.77 E-value=0.023 Score=48.91 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..|++++|++|+||||+.+++..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998864
No 348
>PRK13768 GTPase; Provisional
Probab=94.76 E-value=0.022 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+++.|++||||||++..++..+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 468889999999999998887655
No 349
>PRK06526 transposase; Provisional
Probab=94.75 E-value=0.033 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..++|.||||+|||+++..|+..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 36899999999999999988654
No 350
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.75 E-value=0.023 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-++|+||.||||||+.+.|+.-+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998744
No 351
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.75 E-value=0.027 Score=43.28 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+++.|.+|+||||++..|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998876
No 352
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.74 E-value=0.023 Score=54.13 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=25.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC----CceEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP----EAIHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdl 96 (363)
|.|.|++||||||+++.|.+.++ ....|+-++.
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~y 38 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSF 38 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccc
Confidence 67899999999999999987664 1455665555
No 353
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=94.73 E-value=0.027 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..||+++|++||||||+..++...
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC
Confidence 468999999999999999888654
No 354
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.025 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+.|+|++||||||+++.|+.-+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999997543
No 355
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.70 E-value=0.023 Score=54.27 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..|+|+|++|+||||.+.+|+..+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 357789999999999999998665
No 356
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=94.70 E-value=0.024 Score=49.00 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.+||+++|.+||||||+..++..
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~ 27 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVT 27 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46999999999999999988864
No 357
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=94.69 E-value=0.026 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~ 82 (363)
.+|++|+|++||||||+..++.
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~ 30 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHL 30 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3599999999999999996443
No 358
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.69 E-value=0.027 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+.-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999997654
No 359
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=94.68 E-value=0.025 Score=50.23 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=19.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~ 82 (363)
.||+|+|++|+||||+..++.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~ 22 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFT 22 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999886
No 360
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=94.68 E-value=0.026 Score=49.75 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=22.5
Q ss_pred cccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 59 QVEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 59 ~~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+...+|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45679999999999999999988764
No 361
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=94.68 E-value=0.03 Score=48.36 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=38.0
Q ss_pred HhcCCC-CCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHH-HHHHHhhHHHHHhhh-cceeecCcc
Q psy11897 284 VKDTKE-PAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLI-KANENDGPILQAFKS-HIAKVNFLH 353 (363)
Q Consensus 284 ~~~~~~-~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~-~~~~~~~~i~~~~~~-~~~~v~~~~ 353 (363)
...... ||++|+|++|.+++.+|+.+|+.... ........++|. ...+.|- ..+.. .++.||++.
T Consensus 61 ~~~~~~~pdl~IYL~~~~e~~~~RI~kRgR~~E--~~i~~~Yl~~L~~~~y~~~~---~~~~~~~vl~id~~~ 128 (146)
T PF01712_consen 61 IEEIPKSPDLIIYLDASPETCLERIKKRGREEE--KNIPLEYLERLHEEAYEDWL---KKYDSTPVLVIDADN 128 (146)
T ss_dssp HHHCCHH-SEEEEEE--HHHHHHHHHHCTTGGG--TTS-HHHHHHHHHHHHCCHH---SCCTTTTGCEEEECE
T ss_pred HHHhhccCCeEEEEeCCHHHHHHHHHHhCCchh--cCCCHHHHHHHhHHHHHHHH---HhCCCCceEEEECCc
Confidence 344556 99999999999999999999974321 112345677777 4444441 11222 366777665
No 362
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.67 E-value=0.026 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||||+||||+++.+++.+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999999998876
No 363
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.67 E-value=0.036 Score=57.41 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=24.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
.-++|.||||+|||++++.|+...+ ...+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~-~~~~~ 118 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAG-VPFFS 118 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcC-CCeee
Confidence 3588899999999999999999885 44433
No 364
>PRK06893 DNA replication initiation factor; Validated
Probab=94.66 E-value=0.025 Score=52.47 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-++|.||||+|||+++..++..+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36889999999999999998664
No 365
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.65 E-value=0.028 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=19.7
Q ss_pred cccEEEEcCCCCCHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..++.|+||.||||||+.+.+.-
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34789999999999999998753
No 366
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.64 E-value=0.03 Score=56.56 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.||||+||||+++.|++..+
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998875
No 367
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=94.64 E-value=0.028 Score=48.43 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~ 83 (363)
||+|+|++|+||||+..++..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999877653
No 368
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.64 E-value=0.027 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+..+
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999887544
No 369
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=94.64 E-value=0.027 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.||+|+|.+|+||||+..++..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~ 23 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQ 23 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999887764
No 370
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.64 E-value=0.027 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+..+
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999997544
No 371
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.63 E-value=0.041 Score=51.16 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=31.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC---C-CceEEecCccchhhhhccCcchhHHHHHHHhC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF---P-EAIHISTGDLLRAEVRTGNTRGRNIEAIMKQG 118 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~---~-~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g 118 (363)
.++|.|+||+||||+|.+++... + ....++..+-....+.....+|-.+......+
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~ 85 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISG 85 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcC
Confidence 57889999999999975543321 1 25667755442222322223444444444433
No 372
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=94.61 E-value=0.027 Score=50.03 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|.+|+||||+..++...
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~ 23 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHH 23 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 38999999999999999988754
No 373
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.60 E-value=0.025 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
..|+|+|++||||||+++.|...++
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccC
Confidence 3599999999999999999988775
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=94.60 E-value=0.025 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=20.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..|+|+|+|||||||.+.+|+..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468889999999999888887654
No 375
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.60 E-value=0.027 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
...+.|+|+.||||||+.+.|+--+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3478899999999999999887543
No 376
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.59 E-value=0.027 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+.-+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999887543
No 377
>KOG2702|consensus
Probab=94.59 E-value=0.062 Score=50.06 Aligned_cols=36 Identities=22% Similarity=0.142 Sum_probs=29.9
Q ss_pred HHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCC
Q psy11897 282 QFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRP 317 (363)
Q Consensus 282 ~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~ 317 (363)
.|.++..-.|...+++++-++..+|..+|...+|-.
T Consensus 251 ~Wkdi~k~~d~k~~idV~~~~a~~RVa~RHl~sGl~ 286 (323)
T KOG2702|consen 251 NWKDIYKTLDDKYKIDVDYEAAEERVAKRHLQSGLV 286 (323)
T ss_pred cHHHHHHHhhhheeccccHHHHHHHHHHHhhccccc
Confidence 566666667788999999999999999999877753
No 378
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=94.59 E-value=0.026 Score=48.80 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||+|+|.+|+||||+..++...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988643
No 379
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=94.59 E-value=0.028 Score=50.68 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=21.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
++||+|+|.+|+||||+...|...
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~ 24 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGV 24 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999988753
No 380
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=94.57 E-value=0.029 Score=47.52 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=19.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.|+|+|++||||||+...|..
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhc
Confidence 378999999999999999984
No 381
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.57 E-value=0.028 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
++|+|+|++||||||+..+|...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999988765
No 382
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.57 E-value=0.029 Score=51.19 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+|++||||||+++.|+.-+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998644
No 383
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.56 E-value=0.03 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|+.||||||+++.|+.-+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998654
No 384
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.56 E-value=0.029 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|+.||||||+++.|+.-+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998544
No 385
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.56 E-value=0.03 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+-.+
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998544
No 386
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.55 E-value=0.031 Score=52.07 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||||+||||++..++...
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999888654
No 387
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.55 E-value=0.029 Score=50.74 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+||.||||||+++.|+--.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999987644
No 388
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.55 E-value=0.026 Score=56.35 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-++|+||+|+||||.+.+|+..
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999865
No 389
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.03 Score=50.08 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=27.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCccchhhhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDLLRAEVR 102 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdllr~~i~ 102 (363)
+.-|-|+|.+||||||+|..|.+++- ..+.| -||-+|.-+.
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L-DGDnvR~gL~ 67 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL-DGDNVRHGLN 67 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe-cChhHhhccc
Confidence 34577899999999999988877652 12333 3665555554
No 390
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.54 E-value=0.03 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|+.||||||+++.|+..+
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999997654
No 391
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.54 E-value=0.029 Score=51.80 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|+.||||||+++.|+--+
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998544
No 392
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.54 E-value=0.03 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|++||||||+++.|+--+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998654
No 393
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.53 E-value=0.027 Score=54.07 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.-|+|+||+||||||.+.+|+..+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999988655
No 394
>PRK04195 replication factor C large subunit; Provisional
Probab=94.51 E-value=0.035 Score=57.28 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=26.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
.++|.||||+||||+++.|++.++ .++.++.++.
T Consensus 41 ~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 578899999999999999999986 2344554443
No 395
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.50 E-value=0.032 Score=48.97 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999987544
No 396
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.031 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+.-+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999998654
No 397
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.49 E-value=0.031 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+--.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999997543
No 398
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=94.48 E-value=0.033 Score=49.45 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+|+|+|++||||||+..++..
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998865
No 399
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=94.48 E-value=0.03 Score=48.42 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~ 82 (363)
+||+|+|.+||||||+..++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~ 21 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLK 21 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999999874
No 400
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.032 Score=50.74 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+--+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999987543
No 401
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=94.47 E-value=0.03 Score=48.73 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~ 83 (363)
||+++|++||||||+..++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLT 22 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999988864
No 402
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=94.46 E-value=0.029 Score=48.49 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~ 83 (363)
||+++|++|+||||+..++..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~ 22 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD 22 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 789999999999999987754
No 403
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.46 E-value=0.047 Score=55.24 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=27.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCccc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDLL 97 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdll 97 (363)
+-|.|.|++||||||+++.|...+. ....|+.++..
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 3567899999999999999975542 15667878764
No 404
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.45 E-value=0.033 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.-.++|+|++||||||+++.|+.-+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999887654
No 405
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.45 E-value=0.042 Score=56.09 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=26.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
.-++|.||||+|||++++.++...+ .++.++..++
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 3478899999999999999999875 1344444444
No 406
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.45 E-value=0.033 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+..+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998644
No 407
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.44 E-value=0.031 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..++|+|+.||||||+++.|+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999764
No 408
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=94.42 E-value=0.037 Score=49.05 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=22.3
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..++|+|+|.+|+||||+...|...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 5578999999999999999999864
No 409
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.42 E-value=0.031 Score=52.51 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.-.++|+|++||||||+++.|+.-+
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998654
No 410
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.42 E-value=0.029 Score=50.14 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=26.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH-----HCCCceEEecCccch
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS-----KFPEAIHISTGDLLR 98 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~-----~~~~~~~is~gdllr 98 (363)
.-++|.|+||+|||++|..++. .+. ...++..+++.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~-v~f~~~~~L~~ 88 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYS-VLFITASDLLD 88 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcc-eeEeecCceec
Confidence 3589999999999999988764 443 66677666643
No 411
>PLN03108 Rab family protein; Provisional
Probab=94.42 E-value=0.035 Score=50.57 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...||+|+|++|+||||+..++...
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~ 29 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3469999999999999999988764
No 412
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.032 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.183 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+.-.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999987543
No 413
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.42 E-value=0.033 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+.-+
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999997543
No 414
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.41 E-value=0.033 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|+.||||||+++.|+-.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468899999999999999998655
No 415
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.035 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+.-+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999997543
No 416
>KOG1969|consensus
Probab=94.41 E-value=0.043 Score=58.43 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=28.7
Q ss_pred Cccccc-cEE-EEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 57 PLQVEI-PTR-FTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 57 ~~~~~~-~i~-l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
|.+.|. ||. |+||||.||||+|.-+|++-| .++.|+++|-
T Consensus 320 ~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe 362 (877)
T KOG1969|consen 320 PSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE 362 (877)
T ss_pred ccCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccc
Confidence 343343 554 499999999999999998765 2556666665
No 417
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.40 E-value=0.032 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|+.||||||+++.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998654
No 418
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.39 E-value=0.032 Score=52.15 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+.-+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999988654
No 419
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.034 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+--+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999997543
No 420
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.38 E-value=0.033 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.145 Sum_probs=18.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.-++|+||.||||||+++.|+-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 3578899999999999998863
No 421
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.033 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..++|+|+.||||||+++.|+.-
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999854
No 422
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.035 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+--+
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998543
No 423
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.38 E-value=0.031 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 368999999999999999887543
No 424
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.38 E-value=0.035 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|++||||||+++.|+.-+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999987644
No 425
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.37 E-value=0.034 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+.++|++||||||+++.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6789999999999999998765
No 426
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.034 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+--+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999997544
No 427
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.36 E-value=0.031 Score=49.83 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|.+|+||||+..++...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~ 23 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRG 23 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999988653
No 428
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.36 E-value=0.031 Score=52.34 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..++|+|++||||||+++.|.-
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 3789999999999999998753
No 429
>KOG0991|consensus
Probab=94.35 E-value=0.032 Score=52.07 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++.++|.||||.||||....|+..+
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 34579999999999999999998876
No 430
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.35 E-value=0.057 Score=58.64 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=26.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
.-++|.||||+|||++++.|+...+ +++.++..++
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l 523 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 523 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 3478899999999999999999875 2334443333
No 431
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.34 E-value=0.034 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-|+|+|++||||||+++.|.+..+
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999988764
No 432
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.035 Score=57.25 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|.||||+||||+|+.+++.++
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 378899999999999999999885
No 433
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=94.32 E-value=0.032 Score=47.99 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+|+|+|.||+||||+..+|...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 6899999999999999998764
No 434
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.30 E-value=0.036 Score=49.32 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+..+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988654
No 435
>PLN03118 Rab family protein; Provisional
Probab=94.30 E-value=0.038 Score=50.12 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..++...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~ 37 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4579999999999999999888653
No 436
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.30 E-value=0.035 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|++||||||+++.|+.-+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999988654
No 437
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.30 E-value=0.038 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|++||||||+++.|+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 368899999999999999997654
No 438
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.29 E-value=0.035 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|++||||||+++.|+--+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 27 EKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999997543
No 439
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=94.29 E-value=0.036 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
||+|+|.+||||||+..++...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~ 22 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD 22 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988653
No 440
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.27 E-value=0.037 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+..+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998654
No 441
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.27 E-value=0.037 Score=50.37 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=22.2
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
+.-|+|+|++||||||+.++|.+..+
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999988754
No 442
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.26 E-value=0.037 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-|+|+||+||||||.++.|...++
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 478899999999999999887663
No 443
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.26 E-value=0.036 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|++||||||+++.|+..+
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 368899999999999999887543
No 444
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.26 E-value=0.037 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+-.+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999997543
No 445
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.26 E-value=0.036 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+.|+|++||||||+++.|+-.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999998753
No 446
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.26 E-value=0.038 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-+-|+|+|||||||+++.|...+
T Consensus 106 ~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 106 VLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999998888765
No 447
>PTZ00369 Ras-like protein; Provisional
Probab=94.26 E-value=0.035 Score=49.41 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||+|+|.+|+||||++.++...
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~ 28 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQN 28 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 59999999999999999888753
No 448
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.26 E-value=0.034 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..|-|+|+|||||||++..|...+
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999876554
No 449
>KOG4235|consensus
Probab=94.26 E-value=0.39 Score=43.76 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=38.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCC--cHHHHHHHHHHHHHHhhHHHHHhh--h--cceeecCccccc
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTSGRPDD--KEDAIKKRLIKANENDGPILQAFK--S--HIAKVNFLHKRR 356 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd--~~e~i~~Rl~~~~~~~~~i~~~~~--~--~~~~v~~~~~~~ 356 (363)
..+|.+|+|.++++++.+||..|.. .+. .+-....-|-.-++.|.- -..|. . ....+|+++..+
T Consensus 152 v~~dgiIYLrasPetc~~Ri~~R~R----~EE~gipL~YLe~LH~~HE~WLi-~~~f~~lq~vpvLVLDad~n~d 221 (244)
T KOG4235|consen 152 VSLDGIIYLRASPETCYKRIYLRAR----EEEKGIPLKYLEALHELHESWLI-KLHFPNLQAVPVLVLDADHNMD 221 (244)
T ss_pred cccceEEEeecChHHHHHHHHHHhh----hhhcCCcHHHHHHHHHHHHHHHH-HHhhhHhhcCCeEEEecccchh
Confidence 3689999999999999999999863 221 112233344444455532 12233 1 166778777654
No 450
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.25 E-value=0.037 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+--+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 468899999999999999997543
No 451
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.24 E-value=0.047 Score=46.02 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
..-|+|.|+-||||||+++.+++.++
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34588899999999999999999997
No 452
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.24 E-value=0.044 Score=54.64 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCccccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 56 IPLQVEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 56 ~~~~~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.|+-..-|++|+|+||+||||+++.|++..
T Consensus 128 ~PiGkGQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 128 APIGKGQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eecCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344445689999999999999999988765
No 453
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.23 E-value=0.04 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.-|+|+|++||||||+++.|....+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4699999999999999999998876
No 454
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.04 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999887654
No 455
>PLN03025 replication factor C subunit; Provisional
Probab=94.23 E-value=0.036 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||||+||||++..+++.+
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999886
No 456
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.21 E-value=0.035 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+.|+||+||||||+.+.|+-
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhC
Confidence 4689999999999999998873
No 457
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.21 E-value=0.037 Score=56.45 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.-|+|.||||+||||++++|+..+.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999998874
No 458
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.038 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+-.+
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998654
No 459
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=94.20 E-value=0.038 Score=48.19 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=18.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
+|++|+|++|+||||++.++..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~ 22 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999877654
No 460
>PRK04296 thymidine kinase; Provisional
Probab=94.20 E-value=0.035 Score=50.05 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
++++|+|||||||.+..++.++
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 6779999999999998887765
No 461
>PRK10908 cell division protein FtsE; Provisional
Probab=94.19 E-value=0.04 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|+.||||||+++.|+-.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999997544
No 462
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.18 E-value=0.038 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+..+
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998654
No 463
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.17 E-value=0.042 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|+.||||||+++.|+..+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 368899999999999999998654
No 464
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.17 E-value=0.039 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-|+|+|++||||||+++.|....
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998875
No 465
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.16 E-value=0.039 Score=50.25 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|+.||||||+++.|+.-+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999987544
No 466
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.15 E-value=0.04 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|+.||||||+++.|+..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998544
No 467
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=94.15 E-value=0.042 Score=47.69 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
+||+|+|.+|+||||+..++..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~ 22 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT 22 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 3799999999999999987654
No 468
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.041 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|++||||||+++.|+-.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999987654
No 469
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.15 E-value=0.042 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|+.||||||+++.|+..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999887543
No 470
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.15 E-value=0.039 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+..+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999887544
No 471
>KOG3308|consensus
Probab=94.14 E-value=0.059 Score=49.10 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=29.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCCCceEEecCccc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFPEAIHISTGDLL 97 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdll 97 (363)
|-|.|.++|||||+|+.|.+.|++.-.|+-+|.+
T Consensus 7 vgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFy 40 (225)
T KOG3308|consen 7 VGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFY 40 (225)
T ss_pred EEeecccCCCHhHHHHHHHHHccCCeeecccccc
Confidence 4458888999999999999999988888877764
No 472
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.14 E-value=0.042 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999987654
No 473
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.13 E-value=0.039 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-|+|+||+||||||.++.|.+.+
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998776
No 474
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.13 E-value=0.041 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-+++.||+||||||+.+.|....
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 58899999999999999987554
No 475
>PRK09183 transposase/IS protein; Provisional
Probab=94.13 E-value=0.038 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=19.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..++|+||||+||||++..|+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 35889999999999999988533
No 476
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.11 E-value=0.042 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+.|+|+.||||||+++.|+--
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999988753
No 477
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.11 E-value=0.04 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|++||||||+++.|+--+
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999997544
No 478
>PRK08181 transposase; Validated
Probab=94.11 E-value=0.034 Score=53.11 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=26.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHH-----HCCCceEEecCccch
Q psy11897 63 PTRFTGKPGTGKETQAQNILS-----KFPEAIHISTGDLLR 98 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~-----~~~~~~~is~gdllr 98 (363)
-++|.||||+|||+++..++. .+. +..+++.+++.
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~-v~f~~~~~L~~ 147 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWR-VLFTRTTDLVQ 147 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCc-eeeeeHHHHHH
Confidence 489999999999999998863 332 66677666643
No 479
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.10 E-value=0.04 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+--.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998654
No 480
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.10 E-value=0.042 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+-.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368899999999999999987554
No 481
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.09 E-value=0.044 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
...+.|+|++||||||+++.|+..+
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998654
No 482
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.09 E-value=0.043 Score=49.70 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+.-.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999987543
No 483
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=94.09 E-value=0.04 Score=47.60 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.||+++|.+|+||||+..++..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999987764
No 484
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.044 Score=50.97 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=26.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
--+|+||.||||||++..|+-.- -+.++.|+.
T Consensus 32 vhaiMGPNGsGKSTLa~~i~G~p--~Y~Vt~G~I 63 (251)
T COG0396 32 VHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEI 63 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CceEecceE
Confidence 35679999999999999887654 477887865
No 485
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.06 E-value=0.043 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|++||||||+++.|+.-+
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998544
No 486
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.042 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+-.+
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 368899999999999999998654
No 487
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.043 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-.++|+|++||||||+++.|+.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 32 EITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 46999999999999999999753
No 488
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.044 Score=50.91 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|++||||||+++.|+-.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999997543
No 489
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.05 E-value=0.044 Score=49.95 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|+.||||||+++.|+.-+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999997543
No 490
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.05 E-value=0.043 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
++|.||||+||||+++.+++.+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhc
Confidence 67899999999999999999985
No 491
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.05 E-value=0.041 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-.+.|+|+.||||||+++.|+.-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999998754
No 492
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.04 E-value=0.044 Score=49.48 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|++||||||+++.|+.-+
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcC
Confidence 478999999999999999886544
No 493
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.043 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.+.|+|++||||||+++.|+.-+
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 468899999999999999997543
No 494
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.044 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+-.+
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999998654
No 495
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.02 E-value=0.044 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
+||+|+|.+|+||||+..++..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~ 22 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999998864
No 496
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.02 E-value=0.044 Score=49.58 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|+.||||||+++.|+..+
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998654
No 497
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.038 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+|++||||||+++.|+.-+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 368899999999999999887654
No 498
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.044 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+.|+||+||||||+++.|+...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999999997554
No 499
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.045 Score=49.65 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|+.||||||+++.|+.-+
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999997544
No 500
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.00 E-value=0.044 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+.|+|++||||||+++.|+--
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 30 QVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999853
Done!