Query psy11897
Match_columns 363
No_of_seqs 252 out of 1881
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 21:44:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 1.8E-35 6.3E-40 271.2 9.7 176 61-361 29-206 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 3.7E-34 1.3E-38 260.6 12.9 171 62-361 1-197 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 3.2E-31 1.1E-35 244.5 12.2 176 61-362 8-223 (230)
4 3imh_A Galactose-1-epimerase; 100.0 3.6E-31 1.2E-35 257.4 9.3 178 88-276 20-207 (338)
5 1nsx_A Galactose mutarotase; e 100.0 1E-30 3.6E-35 255.5 9.7 183 88-276 14-207 (347)
6 1lur_A Aldose 1-epimerase; vit 100.0 2.1E-29 7.2E-34 245.5 6.9 179 88-275 15-205 (339)
7 1snz_A Aldose 1-epimerase; mut 99.9 1.9E-28 6.3E-33 239.2 10.0 181 88-276 23-214 (344)
8 1z45_A GAL10 bifunctional prot 99.9 7.1E-28 2.4E-32 254.4 9.3 183 88-275 375-572 (699)
9 1yga_A Hypothetical 37.9 kDa p 99.9 3.2E-27 1.1E-31 230.1 9.6 183 88-275 12-213 (342)
10 3tlx_A Adenylate kinase 2; str 99.9 1.1E-25 3.6E-30 209.1 12.6 176 60-361 28-236 (243)
11 3dl0_A Adenylate kinase; phosp 99.9 4.3E-24 1.5E-28 193.3 12.1 174 62-361 1-207 (216)
12 3fb4_A Adenylate kinase; psych 99.9 1.6E-23 5.5E-28 189.4 12.3 173 62-360 1-206 (216)
13 1e4v_A Adenylate kinase; trans 99.9 1.5E-23 5.3E-28 189.9 12.1 174 62-361 1-208 (214)
14 3os7_A Galactose mutarotase-li 99.9 9.3E-24 3.2E-28 205.7 7.7 177 88-275 20-220 (341)
15 3be4_A Adenylate kinase; malar 99.9 5.6E-23 1.9E-27 186.9 11.7 175 61-361 5-212 (217)
16 1ak2_A Adenylate kinase isoenz 99.9 1.1E-22 3.8E-27 186.9 12.0 176 60-361 15-223 (233)
17 1aky_A Adenylate kinase; ATP:A 99.9 2E-22 6.9E-27 183.1 12.3 175 61-360 4-211 (220)
18 2xb4_A Adenylate kinase; ATP-b 99.9 1.7E-22 6E-27 184.7 7.6 173 62-361 1-217 (223)
19 3mwx_A Aldose 1-epimerase; str 99.9 1.3E-22 4.5E-27 196.3 5.1 172 88-275 16-207 (326)
20 1zak_A Adenylate kinase; ATP:A 99.9 1.8E-21 6E-26 177.2 12.2 176 60-360 4-202 (222)
21 3q1n_A Galactose mutarotase re 99.9 2.5E-22 8.5E-27 191.9 6.8 168 88-275 2-182 (294)
22 3nre_A Aldose 1-epimerase; str 99.8 2.5E-21 8.7E-26 184.6 12.0 166 88-276 4-178 (291)
23 3dcd_A Galactose mutarotase re 99.8 7.1E-22 2.4E-26 189.9 7.6 159 88-267 2-169 (307)
24 2cdn_A Adenylate kinase; phosp 99.8 9.9E-21 3.4E-25 169.4 11.8 171 60-360 19-193 (201)
25 1zd8_A GTP:AMP phosphotransfer 99.8 2.1E-20 7.3E-25 170.7 13.4 171 61-360 7-206 (227)
26 1ukz_A Uridylate kinase; trans 99.8 1.8E-20 6.2E-25 167.6 12.6 177 60-360 14-193 (203)
27 2c95_A Adenylate kinase 1; tra 99.8 3.3E-20 1.1E-24 164.3 12.0 175 61-360 9-185 (196)
28 1qf9_A UMP/CMP kinase, protein 99.8 9.8E-20 3.3E-24 160.3 13.5 172 62-360 7-183 (194)
29 2bwj_A Adenylate kinase 5; pho 99.8 5.5E-20 1.9E-24 163.2 11.5 175 61-360 12-188 (199)
30 3cm0_A Adenylate kinase; ATP-b 99.8 2.5E-20 8.5E-25 164.1 8.7 169 61-360 4-178 (186)
31 1tev_A UMP-CMP kinase; ploop, 99.8 6.3E-20 2.2E-24 161.8 9.3 177 62-360 4-186 (196)
32 3k25_A SLR1438 protein; struct 99.7 3.6E-16 1.2E-20 148.8 12.3 159 88-266 13-184 (289)
33 2bbw_A Adenylate kinase 4, AK4 99.6 1.1E-15 3.6E-20 141.2 11.9 91 268-360 107-226 (246)
34 2cir_A Hexose-6-phosphate muta 99.5 4E-16 1.4E-20 148.7 -0.8 139 88-246 9-166 (297)
35 4eaq_A DTMP kinase, thymidylat 99.5 5.3E-15 1.8E-19 135.9 6.1 87 272-361 126-217 (229)
36 2hta_A Putative enzyme related 99.5 1.5E-14 5E-19 138.8 3.1 145 88-266 43-199 (309)
37 3lw7_A Adenylate kinase relate 99.5 4E-13 1.4E-17 115.3 11.8 89 267-360 80-168 (179)
38 2z0h_A DTMP kinase, thymidylat 99.4 1.1E-12 3.6E-17 115.8 10.2 82 269-360 96-183 (197)
39 1ex7_A Guanylate kinase; subst 99.3 3.4E-12 1.1E-16 113.9 10.2 82 63-148 3-92 (186)
40 2pbr_A DTMP kinase, thymidylat 99.3 1E-11 3.6E-16 108.9 11.6 80 270-360 98-183 (195)
41 4hlc_A DTMP kinase, thymidylat 99.3 3.8E-12 1.3E-16 115.1 6.4 73 286-361 121-193 (205)
42 3kb2_A SPBC2 prophage-derived 99.3 1.8E-11 6E-16 105.3 9.5 75 278-360 83-158 (173)
43 2qor_A Guanylate kinase; phosp 99.2 4.5E-11 1.5E-15 106.9 10.6 80 267-359 105-187 (204)
44 3v9p_A DTMP kinase, thymidylat 99.2 7.9E-13 2.7E-17 121.5 -1.3 72 286-361 148-219 (227)
45 1ly1_A Polynucleotide kinase; 99.2 7.9E-11 2.7E-15 102.0 10.4 64 267-334 80-146 (181)
46 1nks_A Adenylate kinase; therm 99.2 2.8E-11 9.6E-16 105.8 7.5 40 62-101 2-45 (194)
47 3vaa_A Shikimate kinase, SK; s 99.2 3E-11 1E-15 107.6 7.5 82 272-360 104-187 (199)
48 2plr_A DTMP kinase, probable t 99.2 4.4E-11 1.5E-15 106.3 8.3 87 268-360 89-199 (213)
49 2wwf_A Thymidilate kinase, put 99.2 5.1E-12 1.8E-16 112.8 2.1 55 61-118 10-64 (212)
50 3t61_A Gluconokinase; PSI-biol 99.2 1.1E-10 3.6E-15 104.0 10.0 83 268-360 89-171 (202)
51 1kht_A Adenylate kinase; phosp 99.1 1.6E-10 5.4E-15 101.0 10.3 40 62-101 4-47 (192)
52 4edh_A DTMP kinase, thymidylat 99.1 3.3E-11 1.1E-15 109.5 5.9 73 285-361 127-199 (213)
53 3lv8_A DTMP kinase, thymidylat 99.1 1.5E-11 5.1E-16 113.6 2.4 74 283-361 148-221 (236)
54 2v54_A DTMP kinase, thymidylat 99.1 8.4E-11 2.9E-15 104.2 6.1 53 61-118 4-56 (204)
55 4tmk_A Protein (thymidylate ki 99.1 7.7E-11 2.6E-15 107.1 5.0 76 281-361 124-199 (213)
56 1ltq_A Polynucleotide kinase; 99.1 4.1E-10 1.4E-14 106.2 9.7 66 267-336 80-148 (301)
57 1e6c_A Shikimate kinase; phosp 99.0 1.1E-09 3.6E-14 94.5 10.5 65 290-359 94-161 (173)
58 2rhm_A Putative kinase; P-loop 99.0 3.1E-10 1.1E-14 99.5 5.5 39 61-101 5-43 (193)
59 1nn5_A Similar to deoxythymidy 99.0 6.4E-10 2.2E-14 99.1 7.1 71 282-360 122-192 (215)
60 3tmk_A Thymidylate kinase; pho 98.9 5.2E-10 1.8E-14 101.9 5.3 80 277-361 113-195 (216)
61 1p5z_B DCK, deoxycytidine kina 98.9 3.9E-10 1.3E-14 104.8 4.0 72 289-360 174-250 (263)
62 2jaq_A Deoxyguanosine kinase; 98.9 3.3E-09 1.1E-13 93.5 9.1 66 288-360 123-192 (205)
63 2iyv_A Shikimate kinase, SK; t 98.9 1.6E-09 5.3E-14 94.7 6.7 38 62-100 3-40 (184)
64 1via_A Shikimate kinase; struc 98.9 1.9E-09 6.4E-14 93.7 6.3 38 61-99 4-41 (175)
65 3trf_A Shikimate kinase, SK; a 98.9 4.5E-09 1.5E-13 91.7 8.6 36 62-98 6-41 (185)
66 2pt5_A Shikimate kinase, SK; a 98.9 2.2E-09 7.5E-14 92.1 6.0 37 62-99 1-37 (168)
67 3a4m_A L-seryl-tRNA(SEC) kinas 98.8 8.3E-09 2.9E-13 95.9 9.9 83 268-359 75-164 (260)
68 3tau_A Guanylate kinase, GMP k 98.8 2.1E-09 7.2E-14 96.5 5.4 63 280-352 111-174 (208)
69 3tr0_A Guanylate kinase, GMP k 98.8 6.7E-09 2.3E-13 91.9 8.5 71 268-351 100-171 (205)
70 3iij_A Coilin-interacting nucl 98.8 1.8E-08 6.3E-13 87.6 11.2 37 62-99 12-48 (180)
71 3hjn_A DTMP kinase, thymidylat 98.8 6.8E-09 2.3E-13 92.9 8.1 70 283-361 115-184 (197)
72 1vht_A Dephospho-COA kinase; s 98.8 3.5E-09 1.2E-13 95.2 6.2 41 61-103 4-44 (218)
73 1zuh_A Shikimate kinase; alpha 98.8 1.1E-08 3.8E-13 88.0 8.7 37 62-99 8-44 (168)
74 3zvl_A Bifunctional polynucleo 98.8 1.4E-08 4.9E-13 100.9 10.5 34 62-96 259-292 (416)
75 1cke_A CK, MSSA, protein (cyti 98.8 2E-09 6.8E-14 97.0 3.4 39 62-101 6-44 (227)
76 3ld9_A DTMP kinase, thymidylat 98.8 2.2E-09 7.6E-14 98.2 3.5 65 288-361 144-208 (223)
77 1y63_A LMAJ004144AAA protein; 98.8 2.3E-08 7.8E-13 87.8 9.6 38 61-99 10-48 (184)
78 2if2_A Dephospho-COA kinase; a 98.8 2.4E-08 8.2E-13 88.5 9.7 39 62-102 2-40 (204)
79 1jjv_A Dephospho-COA kinase; P 98.7 2.6E-08 8.8E-13 88.6 9.3 39 62-102 3-41 (206)
80 2f6r_A COA synthase, bifunctio 98.7 3.9E-08 1.3E-12 92.6 10.1 45 61-107 75-119 (281)
81 2vli_A Antibiotic resistance p 98.7 3.2E-08 1.1E-12 85.8 8.5 30 61-91 5-34 (183)
82 2qt1_A Nicotinamide riboside k 98.7 6.1E-08 2.1E-12 86.3 9.4 38 61-98 21-58 (207)
83 3nwj_A ATSK2; P loop, shikimat 98.7 4.5E-08 1.5E-12 90.9 8.4 39 61-100 48-86 (250)
84 4eun_A Thermoresistant glucoki 98.7 8.6E-09 2.9E-13 91.7 3.3 34 62-96 30-63 (200)
85 1gvn_B Zeta; postsegregational 98.6 1.2E-07 4.2E-12 89.5 10.5 40 61-101 33-73 (287)
86 1knq_A Gluconate kinase; ALFA/ 98.6 1.4E-07 4.7E-12 81.5 9.7 35 61-96 8-42 (175)
87 2p5t_B PEZT; postsegregational 98.6 5.1E-08 1.8E-12 90.1 6.9 42 60-101 31-72 (253)
88 1uj2_A Uridine-cytidine kinase 98.6 4.9E-07 1.7E-11 83.3 13.4 38 60-98 21-68 (252)
89 3a00_A Guanylate kinase, GMP k 98.6 9.4E-08 3.2E-12 84.0 7.8 51 278-335 102-154 (186)
90 2j41_A Guanylate kinase; GMP, 98.6 7.4E-08 2.5E-12 85.1 6.8 25 61-85 6-30 (207)
91 1kag_A SKI, shikimate kinase I 98.6 1.5E-07 5.2E-12 80.9 8.1 36 62-98 5-40 (173)
92 2h92_A Cytidylate kinase; ross 98.5 1.7E-07 5.7E-12 84.0 7.3 38 62-100 4-41 (219)
93 1gtv_A TMK, thymidylate kinase 98.5 4.8E-09 1.6E-13 93.5 -4.0 69 289-360 132-205 (214)
94 1uf9_A TT1252 protein; P-loop, 98.4 4.3E-07 1.5E-11 79.8 7.8 39 61-101 8-46 (203)
95 2vp4_A Deoxynucleoside kinase; 98.4 2.3E-07 7.7E-12 84.4 5.7 71 286-362 143-218 (230)
96 1q3t_A Cytidylate kinase; nucl 98.4 1E-06 3.4E-11 80.3 9.3 38 61-99 16-53 (236)
97 1s96_A Guanylate kinase, GMP k 98.3 4.9E-06 1.7E-10 75.5 12.3 72 268-352 111-183 (219)
98 3ney_A 55 kDa erythrocyte memb 98.3 1.1E-06 3.7E-11 78.8 7.7 34 61-94 19-52 (197)
99 1m7g_A Adenylylsulfate kinase; 98.3 1.3E-07 4.6E-12 84.6 1.7 25 61-85 25-49 (211)
100 1jov_A HI1317; hypothetical pr 98.3 2.6E-07 9E-12 86.6 3.8 124 88-245 23-156 (270)
101 2ocp_A DGK, deoxyguanosine kin 98.3 2.2E-06 7.5E-11 78.2 9.4 69 289-359 149-224 (241)
102 4i1u_A Dephospho-COA kinase; s 98.3 3.9E-07 1.3E-11 82.5 4.0 50 61-112 9-58 (210)
103 1qhx_A CPT, protein (chloramph 98.2 3.8E-06 1.3E-10 72.3 8.9 34 63-96 5-39 (178)
104 3lnc_A Guanylate kinase, GMP k 98.2 1.3E-06 4.5E-11 79.1 5.4 39 291-335 142-180 (231)
105 3tvt_A Disks large 1 tumor sup 98.1 8.9E-06 3E-10 77.1 9.8 83 60-149 99-190 (292)
106 1kjw_A Postsynaptic density pr 98.1 2.7E-05 9.1E-10 73.9 11.8 81 61-148 105-194 (295)
107 2yvu_A Probable adenylyl-sulfa 98.0 5.2E-06 1.8E-10 72.4 5.7 26 61-86 13-38 (186)
108 1lvg_A Guanylate kinase, GMP k 98.0 5E-05 1.7E-09 67.3 12.2 40 290-335 117-156 (198)
109 2pez_A Bifunctional 3'-phospho 98.0 6.6E-06 2.3E-10 71.2 5.5 25 61-85 5-29 (179)
110 2axn_A 6-phosphofructo-2-kinas 98.0 8E-06 2.7E-10 83.4 6.7 39 62-101 36-78 (520)
111 3c8u_A Fructokinase; YP_612366 97.8 5.2E-05 1.8E-09 67.4 9.0 40 288-330 146-185 (208)
112 3fdi_A Uncharacterized protein 97.8 0.0001 3.6E-09 65.6 10.3 36 63-100 8-43 (201)
113 1p6x_A Thymidine kinase; P-loo 97.8 4.9E-05 1.7E-09 73.3 8.4 51 288-341 156-206 (334)
114 2ga8_A Hypothetical 39.9 kDa p 97.7 3.1E-05 1E-09 75.3 5.9 67 262-330 257-328 (359)
115 3hdt_A Putative kinase; struct 97.7 0.00011 3.9E-09 66.7 9.3 40 62-103 15-54 (223)
116 3r20_A Cytidylate kinase; stru 97.7 1.6E-05 5.3E-10 73.0 3.2 39 61-100 9-47 (233)
117 2grj_A Dephospho-COA kinase; T 97.7 1.8E-05 6.3E-10 70.2 3.3 41 62-103 13-53 (192)
118 1x6v_B Bifunctional 3'-phospho 97.7 0.00011 3.9E-09 76.4 9.5 38 61-99 52-93 (630)
119 4e22_A Cytidylate kinase; P-lo 97.7 2.5E-05 8.6E-10 71.9 3.9 38 62-100 28-65 (252)
120 2gks_A Bifunctional SAT/APS ki 97.6 6.9E-05 2.4E-09 76.9 7.1 39 61-101 372-415 (546)
121 2ze6_A Isopentenyl transferase 97.6 3.2E-05 1.1E-09 71.4 4.1 33 63-96 3-35 (253)
122 1e2k_A Thymidine kinase; trans 97.6 0.00014 4.8E-09 70.0 8.5 45 289-336 154-198 (331)
123 3ake_A Cytidylate kinase; CMP 97.5 3.2E-05 1.1E-09 68.0 2.8 37 63-100 4-40 (208)
124 2xkx_A Disks large homolog 4; 97.5 0.00063 2.1E-08 72.0 12.9 81 61-148 531-620 (721)
125 1of1_A Thymidine kinase; trans 97.5 0.00027 9.2E-09 69.1 9.2 26 61-86 49-74 (376)
126 1z6g_A Guanylate kinase; struc 97.4 0.0019 6.5E-08 57.9 13.3 39 292-336 139-178 (218)
127 1bif_A 6-phosphofructo-2-kinas 97.4 0.00019 6.4E-09 72.1 6.2 37 60-96 38-78 (469)
128 3tqc_A Pantothenate kinase; bi 97.3 0.00065 2.2E-08 65.1 9.5 35 62-96 93-133 (321)
129 1osn_A Thymidine kinase, VZV-T 97.3 0.00029 1E-08 68.0 6.9 46 288-336 165-210 (341)
130 1zp6_A Hypothetical protein AT 97.3 0.00014 4.8E-09 63.1 3.7 35 61-95 9-44 (191)
131 1dek_A Deoxynucleoside monopho 97.2 0.00019 6.6E-09 66.0 4.2 41 62-103 2-42 (241)
132 3crm_A TRNA delta(2)-isopenten 97.2 0.00026 8.9E-09 67.9 4.7 33 63-96 7-39 (323)
133 1m8p_A Sulfate adenylyltransfe 97.1 0.00052 1.8E-08 70.8 6.5 27 60-86 395-421 (573)
134 3d3q_A TRNA delta(2)-isopenten 97.1 0.00037 1.3E-08 67.3 4.8 33 63-96 9-41 (340)
135 2bdt_A BH3686; alpha-beta prot 97.1 0.00043 1.5E-08 60.1 4.6 31 63-93 4-34 (189)
136 3a8t_A Adenylate isopentenyltr 97.0 0.0004 1.4E-08 67.0 4.5 33 63-96 42-74 (339)
137 1kgd_A CASK, peripheral plasma 97.0 0.00042 1.4E-08 60.1 4.1 24 63-86 7-30 (180)
138 3ch4_B Pmkase, phosphomevalona 97.0 0.00024 8.3E-09 63.6 2.5 40 62-101 12-53 (202)
139 3foz_A TRNA delta(2)-isopenten 96.9 0.0009 3.1E-08 63.8 5.1 33 63-96 12-44 (316)
140 3ty1_A Hypothetical aldose 1-e 96.8 0.00088 3E-08 65.7 5.0 79 166-245 133-217 (384)
141 3czq_A Putative polyphosphate 96.8 0.00066 2.3E-08 64.4 3.8 68 288-355 189-262 (304)
142 3exa_A TRNA delta(2)-isopenten 96.8 0.00086 2.9E-08 64.1 4.6 33 63-96 5-37 (322)
143 3asz_A Uridine kinase; cytidin 96.8 0.00072 2.5E-08 59.6 3.7 36 61-96 6-42 (211)
144 3uie_A Adenylyl-sulfate kinase 96.8 0.00061 2.1E-08 59.9 3.2 24 62-85 26-49 (200)
145 1ye8_A Protein THEP1, hypothet 96.8 0.00064 2.2E-08 59.3 3.0 25 62-86 1-25 (178)
146 3t15_A Ribulose bisphosphate c 96.7 0.001 3.5E-08 62.5 4.1 36 61-96 36-72 (293)
147 1a7j_A Phosphoribulokinase; tr 96.7 0.00044 1.5E-08 65.1 1.3 36 63-98 7-46 (290)
148 2jeo_A Uridine-cytidine kinase 96.5 0.0017 5.7E-08 59.1 3.9 25 62-86 26-50 (245)
149 3oes_A GTPase rhebl1; small GT 96.4 0.0015 5.3E-08 56.8 3.1 33 53-85 16-48 (201)
150 1lv7_A FTSH; alpha/beta domain 96.4 0.0021 7.1E-08 58.5 4.0 36 61-96 45-81 (257)
151 3eph_A TRNA isopentenyltransfe 96.4 0.002 6.7E-08 63.6 4.0 32 63-95 4-35 (409)
152 4b4t_M 26S protease regulatory 96.3 0.0026 8.8E-08 63.4 4.6 37 61-97 215-252 (434)
153 1rz3_A Hypothetical protein rb 96.3 0.0019 6.6E-08 56.8 3.3 25 61-85 22-46 (201)
154 3syl_A Protein CBBX; photosynt 96.3 0.0029 9.9E-08 58.9 4.7 34 62-96 68-110 (309)
155 3ec2_A DNA replication protein 96.3 0.0015 5.3E-08 56.1 2.4 24 62-85 39-62 (180)
156 4b4t_J 26S protease regulatory 96.3 0.0033 1.1E-07 61.9 5.0 36 62-97 183-219 (405)
157 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0027 9.1E-08 57.5 4.0 36 61-96 39-75 (262)
158 4b4t_K 26S protease regulatory 96.3 0.003 1E-07 62.8 4.5 33 64-96 209-242 (428)
159 3h4m_A Proteasome-activating n 96.2 0.0036 1.2E-07 57.6 4.8 28 62-90 52-79 (285)
160 2x8a_A Nuclear valosin-contain 96.2 0.0035 1.2E-07 58.3 4.6 33 64-96 47-80 (274)
161 1znw_A Guanylate kinase, GMP k 96.2 0.003 1E-07 55.8 3.8 32 60-92 19-50 (207)
162 3cf0_A Transitional endoplasmi 96.2 0.0043 1.5E-07 58.2 4.9 29 63-92 51-79 (301)
163 1jbk_A CLPB protein; beta barr 96.2 0.0025 8.5E-08 53.9 3.0 23 63-85 45-67 (195)
164 4gp7_A Metallophosphoesterase; 96.1 0.0025 8.6E-08 54.7 3.0 53 282-338 93-145 (171)
165 3kfv_A Tight junction protein 96.1 0.039 1.3E-06 52.4 11.4 32 60-94 144-175 (308)
166 3b9p_A CG5977-PA, isoform A; A 96.1 0.0036 1.2E-07 58.0 4.2 35 62-96 55-90 (297)
167 1ixz_A ATP-dependent metallopr 96.1 0.0038 1.3E-07 56.7 4.0 24 63-86 51-74 (254)
168 1in4_A RUVB, holliday junction 96.1 0.0041 1.4E-07 59.3 4.4 34 63-96 53-86 (334)
169 2oil_A CATX-8, RAS-related pro 96.0 0.0037 1.3E-07 53.7 3.5 25 60-84 24-48 (193)
170 4b4t_H 26S protease regulatory 96.0 0.0038 1.3E-07 62.5 4.0 36 61-96 243-279 (467)
171 2il1_A RAB12; G-protein, GDP, 96.0 0.0033 1.1E-07 54.3 3.1 25 59-83 24-48 (192)
172 2dyk_A GTP-binding protein; GT 96.0 0.0035 1.2E-07 51.7 3.1 24 62-85 2-25 (161)
173 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0062 2.1E-07 57.9 5.1 36 62-97 46-83 (322)
174 2gf9_A RAS-related protein RAB 95.9 0.0048 1.6E-07 52.9 3.8 25 60-84 21-45 (189)
175 4b4t_I 26S protease regulatory 95.9 0.0056 1.9E-07 60.8 4.6 35 63-97 218-253 (437)
176 3bos_A Putative DNA replicatio 95.9 0.0043 1.5E-07 54.8 3.5 35 62-96 53-91 (242)
177 2a5j_A RAS-related protein RAB 95.9 0.0067 2.3E-07 52.1 4.5 25 60-84 20-44 (191)
178 1upt_A ARL1, ADP-ribosylation 95.9 0.0053 1.8E-07 51.1 3.8 27 58-84 4-30 (171)
179 2p65_A Hypothetical protein PF 95.9 0.0034 1.1E-07 53.1 2.5 23 63-85 45-67 (187)
180 1sq5_A Pantothenate kinase; P- 95.9 0.0054 1.9E-07 57.9 4.2 51 289-339 214-278 (308)
181 4b4t_L 26S protease subunit RP 95.9 0.0053 1.8E-07 61.2 4.3 36 62-97 216-252 (437)
182 1zd9_A ADP-ribosylation factor 95.9 0.0045 1.6E-07 53.1 3.4 25 60-84 21-45 (188)
183 3dz8_A RAS-related protein RAB 95.9 0.0028 9.6E-08 54.6 2.0 27 59-85 21-47 (191)
184 1iy2_A ATP-dependent metallopr 95.9 0.0065 2.2E-07 56.0 4.6 24 63-86 75-98 (278)
185 1odf_A YGR205W, hypothetical 3 95.8 0.0042 1.4E-07 58.4 3.2 36 61-96 31-73 (290)
186 3n70_A Transport activator; si 95.8 0.0053 1.8E-07 51.1 3.4 24 62-85 25-48 (145)
187 2ehv_A Hypothetical protein PH 95.8 0.0045 1.5E-07 55.4 3.2 21 62-82 31-51 (251)
188 2f9l_A RAB11B, member RAS onco 95.8 0.0047 1.6E-07 53.7 3.2 24 61-84 5-28 (199)
189 3hws_A ATP-dependent CLP prote 95.8 0.0063 2.2E-07 58.4 4.4 29 62-91 52-80 (363)
190 1g41_A Heat shock protein HSLU 95.8 0.006 2.1E-07 60.9 4.2 31 62-93 51-81 (444)
191 1xjc_A MOBB protein homolog; s 95.8 0.0048 1.7E-07 53.5 3.0 24 62-85 5-28 (169)
192 1oix_A RAS-related protein RAB 95.8 0.0048 1.6E-07 53.4 3.0 26 60-85 28-53 (191)
193 4a74_A DNA repair and recombin 95.7 0.0049 1.7E-07 54.4 3.1 24 62-85 26-49 (231)
194 2h17_A ADP-ribosylation factor 95.7 0.0042 1.5E-07 52.9 2.5 25 60-84 20-44 (181)
195 3c5c_A RAS-like protein 12; GD 95.7 0.0051 1.7E-07 52.9 3.0 25 60-84 20-44 (187)
196 3ihw_A Centg3; RAS, centaurin, 95.7 0.0061 2.1E-07 52.4 3.5 25 60-84 19-43 (184)
197 1ofh_A ATP-dependent HSL prote 95.7 0.0062 2.1E-07 56.3 3.8 35 62-96 51-86 (310)
198 2w58_A DNAI, primosome compone 95.7 0.0061 2.1E-07 53.1 3.5 24 62-85 55-78 (202)
199 1z2a_A RAS-related protein RAB 95.7 0.0059 2E-07 50.6 3.3 25 60-84 4-28 (168)
200 2i3b_A HCR-ntpase, human cance 95.7 0.0053 1.8E-07 54.0 3.0 23 63-85 3-25 (189)
201 1c9k_A COBU, adenosylcobinamid 95.7 0.0075 2.6E-07 52.9 3.9 30 64-94 2-32 (180)
202 1l8q_A Chromosomal replication 95.7 0.0075 2.6E-07 56.8 4.2 35 62-96 38-76 (324)
203 3eie_A Vacuolar protein sortin 95.6 0.0077 2.6E-07 57.0 4.1 29 62-91 52-80 (322)
204 1d2n_A N-ethylmaleimide-sensit 95.6 0.0066 2.2E-07 55.7 3.5 25 62-86 65-89 (272)
205 3shw_A Tight junction protein 95.6 0.043 1.5E-06 55.0 9.7 30 60-92 223-252 (468)
206 1lw7_A Transcriptional regulat 95.6 0.0067 2.3E-07 58.5 3.7 26 61-86 170-195 (365)
207 2r62_A Cell division protease 95.6 0.0033 1.1E-07 57.4 1.3 24 63-86 46-69 (268)
208 2ce2_X GTPase HRAS; signaling 95.6 0.006 2.1E-07 50.1 2.8 23 62-84 4-26 (166)
209 1um8_A ATP-dependent CLP prote 95.5 0.009 3.1E-07 57.6 4.4 33 62-94 73-106 (376)
210 2chg_A Replication factor C sm 95.5 0.0075 2.6E-07 52.1 3.5 23 63-85 40-62 (226)
211 2qmh_A HPR kinase/phosphorylas 95.5 0.0064 2.2E-07 54.3 3.0 31 62-94 35-65 (205)
212 2wjg_A FEOB, ferrous iron tran 95.5 0.0085 2.9E-07 51.0 3.7 24 61-84 7-30 (188)
213 3con_A GTPase NRAS; structural 95.5 0.0072 2.5E-07 51.6 3.2 23 62-84 22-44 (190)
214 1njg_A DNA polymerase III subu 95.5 0.0065 2.2E-07 53.1 3.0 24 63-86 47-70 (250)
215 1g8f_A Sulfate adenylyltransfe 95.5 0.0053 1.8E-07 62.3 2.7 27 60-86 394-420 (511)
216 3tsz_A Tight junction protein 95.5 0.044 1.5E-06 53.6 9.2 28 60-90 231-258 (391)
217 2zej_A Dardarin, leucine-rich 95.5 0.006 2E-07 52.3 2.6 23 62-84 3-25 (184)
218 1kao_A RAP2A; GTP-binding prot 95.5 0.0075 2.6E-07 49.7 3.1 23 62-84 4-26 (167)
219 2kjq_A DNAA-related protein; s 95.5 0.0047 1.6E-07 52.1 1.9 23 63-85 38-60 (149)
220 1np6_A Molybdopterin-guanine d 95.5 0.0072 2.5E-07 52.5 3.1 23 63-85 8-30 (174)
221 3czp_A Putative polyphosphate 95.5 0.006 2.1E-07 61.7 2.9 77 277-355 132-219 (500)
222 1u8z_A RAS-related protein RAL 95.5 0.0071 2.4E-07 49.9 2.9 24 61-84 4-27 (168)
223 3aez_A Pantothenate kinase; tr 95.5 0.0072 2.5E-07 57.4 3.3 25 61-85 90-114 (312)
224 3llu_A RAS-related GTP-binding 95.5 0.0065 2.2E-07 52.6 2.7 26 60-85 19-44 (196)
225 3clv_A RAB5 protein, putative; 95.4 0.01 3.6E-07 50.5 4.0 25 60-84 6-30 (208)
226 3pqc_A Probable GTP-binding pr 95.4 0.0096 3.3E-07 50.7 3.7 25 60-84 22-46 (195)
227 2f7s_A C25KG, RAS-related prot 95.4 0.0083 2.8E-07 52.5 3.4 25 60-84 24-48 (217)
228 2fn4_A P23, RAS-related protei 95.4 0.0085 2.9E-07 50.2 3.3 25 60-84 8-32 (181)
229 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0079 2.7E-07 50.5 3.1 25 60-84 6-30 (177)
230 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.0081 2.8E-07 52.9 3.2 22 63-84 25-46 (235)
231 1g16_A RAS-related protein SEC 95.4 0.0083 2.8E-07 49.8 3.1 24 61-84 3-26 (170)
232 2qp9_X Vacuolar protein sortin 95.4 0.0095 3.2E-07 57.4 3.9 29 62-91 85-113 (355)
233 3t1o_A Gliding protein MGLA; G 95.4 0.0088 3E-07 50.9 3.3 27 60-86 13-39 (198)
234 2hup_A RAS-related protein RAB 95.4 0.0075 2.6E-07 52.6 2.9 26 59-84 27-52 (201)
235 3q85_A GTP-binding protein REM 95.4 0.0086 3E-07 49.8 3.1 22 62-83 3-24 (169)
236 1pui_A ENGB, probable GTP-bind 95.4 0.0054 1.9E-07 53.4 1.9 27 57-83 22-48 (210)
237 2nzj_A GTP-binding protein REM 95.4 0.0089 3E-07 49.9 3.2 24 61-84 4-27 (175)
238 1ek0_A Protein (GTP-binding pr 95.3 0.0082 2.8E-07 49.7 2.9 24 61-84 3-26 (170)
239 2wji_A Ferrous iron transport 95.3 0.0088 3E-07 50.2 3.1 23 62-84 4-26 (165)
240 2h57_A ADP-ribosylation factor 95.3 0.0066 2.3E-07 52.0 2.4 25 60-84 20-44 (190)
241 1ky3_A GTP-binding protein YPT 95.3 0.0092 3.1E-07 50.1 3.2 25 60-84 7-31 (182)
242 1htw_A HI0065; nucleotide-bind 95.3 0.012 4E-07 50.3 3.9 25 62-86 34-58 (158)
243 3q72_A GTP-binding protein RAD 95.3 0.0082 2.8E-07 49.8 2.9 21 62-82 3-23 (166)
244 3bc1_A RAS-related protein RAB 95.3 0.01 3.5E-07 50.3 3.5 25 60-84 10-34 (195)
245 3d8b_A Fidgetin-like protein 1 95.3 0.014 4.7E-07 56.1 4.8 35 62-96 118-153 (357)
246 1z06_A RAS-related protein RAB 95.3 0.0096 3.3E-07 50.9 3.2 25 60-84 19-43 (189)
247 2hxs_A RAB-26, RAS-related pro 95.3 0.01 3.5E-07 49.8 3.3 24 61-84 6-29 (178)
248 1c1y_A RAS-related protein RAP 95.3 0.0098 3.3E-07 49.2 3.2 23 62-84 4-26 (167)
249 4fcw_A Chaperone protein CLPB; 95.3 0.011 3.7E-07 54.9 3.8 23 63-85 49-71 (311)
250 1z08_A RAS-related protein RAB 95.3 0.0097 3.3E-07 49.4 3.1 25 60-84 5-29 (170)
251 1r8s_A ADP-ribosylation factor 95.3 0.011 3.8E-07 48.9 3.4 23 62-84 1-23 (164)
252 1z0j_A RAB-22, RAS-related pro 95.3 0.0093 3.2E-07 49.5 3.0 24 61-84 6-29 (170)
253 2gco_A H9, RHO-related GTP-bin 95.3 0.015 5.2E-07 50.4 4.5 25 60-84 24-48 (201)
254 2cvh_A DNA repair and recombin 95.3 0.0096 3.3E-07 52.2 3.2 34 62-95 21-55 (220)
255 2eyu_A Twitching motility prot 95.2 0.0089 3E-07 55.3 3.1 24 62-85 26-49 (261)
256 3cph_A RAS-related protein SEC 95.2 0.011 3.7E-07 51.4 3.3 28 57-84 16-43 (213)
257 2cxx_A Probable GTP-binding pr 95.2 0.0095 3.3E-07 50.6 2.9 23 62-84 2-24 (190)
258 2gj8_A MNME, tRNA modification 95.2 0.01 3.5E-07 50.4 3.1 24 61-84 4-27 (172)
259 3tif_A Uncharacterized ABC tra 95.2 0.0085 2.9E-07 54.4 2.7 24 62-85 32-55 (235)
260 1svi_A GTP-binding protein YSX 95.2 0.011 3.7E-07 50.6 3.2 25 60-84 22-46 (195)
261 2v9p_A Replication protein E1; 95.2 0.011 3.9E-07 56.0 3.6 24 62-85 127-150 (305)
262 1r2q_A RAS-related protein RAB 95.2 0.011 3.8E-07 48.9 3.2 24 61-84 6-29 (170)
263 3t5g_A GTP-binding protein RHE 95.2 0.01 3.4E-07 50.2 2.9 24 60-83 5-28 (181)
264 2zan_A Vacuolar protein sortin 95.2 0.013 4.3E-07 58.3 4.1 36 62-97 168-205 (444)
265 3pfi_A Holliday junction ATP-d 95.2 0.014 4.8E-07 55.0 4.2 24 63-86 57-80 (338)
266 2bjv_A PSP operon transcriptio 95.2 0.016 5.5E-07 52.8 4.5 35 62-96 30-68 (265)
267 2erx_A GTP-binding protein DI- 95.1 0.011 3.6E-07 49.1 3.0 23 61-83 3-25 (172)
268 2ce7_A Cell division protein F 95.1 0.013 4.3E-07 59.1 4.0 35 62-96 50-85 (476)
269 2ged_A SR-beta, signal recogni 95.1 0.013 4.4E-07 50.1 3.6 26 60-85 47-72 (193)
270 3reg_A RHO-like small GTPase; 95.1 0.011 3.8E-07 50.7 3.2 25 60-84 22-46 (194)
271 2r2a_A Uncharacterized protein 95.1 0.014 4.6E-07 51.9 3.7 25 60-84 4-28 (199)
272 2f1r_A Molybdopterin-guanine d 95.1 0.0051 1.7E-07 53.3 0.9 24 63-86 4-27 (171)
273 2c9o_A RUVB-like 1; hexameric 95.1 0.014 4.8E-07 58.1 4.2 35 63-97 65-102 (456)
274 1tue_A Replication protein E1; 95.1 0.0086 3E-07 53.8 2.4 24 63-86 60-83 (212)
275 1svm_A Large T antigen; AAA+ f 95.1 0.015 5E-07 56.8 4.3 53 287-339 298-357 (377)
276 2g6b_A RAS-related protein RAB 95.1 0.011 3.7E-07 49.7 2.9 26 60-85 9-34 (180)
277 1gwn_A RHO-related GTP-binding 95.1 0.011 3.9E-07 51.8 3.2 25 60-84 27-51 (205)
278 3tw8_B RAS-related protein RAB 95.1 0.01 3.6E-07 49.7 2.8 24 60-83 8-31 (181)
279 1m7b_A RND3/RHOE small GTP-bin 95.1 0.012 4E-07 50.2 3.1 25 60-84 6-30 (184)
280 2onk_A Molybdate/tungstate ABC 95.1 0.011 3.8E-07 53.9 3.2 23 63-85 26-48 (240)
281 3tkl_A RAS-related protein RAB 95.1 0.014 4.6E-07 49.9 3.5 25 60-84 15-39 (196)
282 1n0w_A DNA repair protein RAD5 95.1 0.012 4E-07 52.5 3.2 22 63-84 26-47 (243)
283 3kkq_A RAS-related protein M-R 95.1 0.013 4.4E-07 49.6 3.3 25 60-84 17-41 (183)
284 3co5_A Putative two-component 95.1 0.0056 1.9E-07 50.9 1.0 34 62-95 28-61 (143)
285 3bwd_D RAC-like GTP-binding pr 95.0 0.013 4.3E-07 49.4 3.3 25 60-84 7-31 (182)
286 1nrj_B SR-beta, signal recogni 95.0 0.013 4.4E-07 51.3 3.3 26 60-85 11-36 (218)
287 3uk6_A RUVB-like 2; hexameric 95.0 0.011 3.6E-07 56.4 3.0 24 63-86 72-95 (368)
288 4bas_A ADP-ribosylation factor 95.0 0.011 3.8E-07 50.6 2.9 25 60-84 16-40 (199)
289 2lkc_A Translation initiation 95.0 0.013 4.5E-07 49.1 3.3 25 60-84 7-31 (178)
290 1zbd_A Rabphilin-3A; G protein 95.0 0.014 4.8E-07 50.4 3.5 25 60-84 7-31 (203)
291 2bme_A RAB4A, RAS-related prot 95.0 0.011 3.8E-07 50.0 2.8 25 60-84 9-33 (186)
292 1z0f_A RAB14, member RAS oncog 95.0 0.013 4.6E-07 48.9 3.3 25 60-84 14-38 (179)
293 2bov_A RAla, RAS-related prote 95.0 0.013 4.4E-07 50.5 3.2 25 60-84 13-37 (206)
294 3vfd_A Spastin; ATPase, microt 95.0 0.018 6.2E-07 55.8 4.6 35 62-96 149-184 (389)
295 2a9k_A RAS-related protein RAL 95.0 0.012 4.1E-07 49.6 2.9 24 61-84 18-41 (187)
296 4dsu_A GTPase KRAS, isoform 2B 95.0 0.013 4.5E-07 49.5 3.1 24 61-84 4-27 (189)
297 2pcj_A ABC transporter, lipopr 95.0 0.01 3.5E-07 53.5 2.5 23 63-85 32-54 (224)
298 2p5s_A RAS and EF-hand domain 94.9 0.014 4.8E-07 50.4 3.3 25 60-84 27-51 (199)
299 2ew1_A RAS-related protein RAB 94.9 0.014 4.7E-07 51.1 3.3 25 60-84 25-49 (201)
300 2y8e_A RAB-protein 6, GH09086P 94.9 0.013 4.5E-07 49.0 3.0 24 61-84 14-37 (179)
301 1sxj_A Activator 1 95 kDa subu 94.9 0.019 6.6E-07 58.0 4.7 29 62-91 78-106 (516)
302 1vg8_A RAS-related protein RAB 94.9 0.013 4.6E-07 50.5 3.0 26 60-85 7-32 (207)
303 2efe_B Small GTP-binding prote 94.9 0.015 5.1E-07 48.9 3.2 25 60-84 11-35 (181)
304 1zcb_A G alpha I/13; GTP-bindi 94.9 0.013 4.6E-07 56.8 3.2 27 59-85 31-57 (362)
305 2hf9_A Probable hydrogenase ni 94.8 0.016 5.6E-07 51.0 3.5 25 61-85 38-62 (226)
306 1mh1_A RAC1; GTP-binding, GTPa 94.8 0.016 5.4E-07 48.9 3.3 24 61-84 5-28 (186)
307 3b85_A Phosphate starvation-in 94.8 0.011 3.8E-07 52.7 2.3 23 62-84 23-45 (208)
308 1cr0_A DNA primase/helicase; R 94.8 0.014 4.7E-07 54.3 3.1 23 62-84 36-58 (296)
309 3sop_A Neuronal-specific septi 94.8 0.013 4.6E-07 54.3 2.9 24 62-85 3-26 (270)
310 2cbz_A Multidrug resistance-as 94.8 0.013 4.5E-07 53.2 2.8 24 62-85 32-55 (237)
311 3lxx_A GTPase IMAP family memb 94.8 0.015 5.2E-07 52.2 3.1 25 60-84 28-52 (239)
312 3gfo_A Cobalt import ATP-bindi 94.7 0.013 4.4E-07 54.7 2.7 24 62-85 35-58 (275)
313 2fg5_A RAB-22B, RAS-related pr 94.7 0.016 5.3E-07 49.9 3.0 25 60-84 22-46 (192)
314 2atv_A RERG, RAS-like estrogen 94.7 0.016 5.4E-07 49.9 3.1 25 60-84 27-51 (196)
315 1b0u_A Histidine permease; ABC 94.7 0.013 4.5E-07 54.1 2.7 23 63-85 34-56 (262)
316 3lxw_A GTPase IMAP family memb 94.7 0.015 5.3E-07 52.8 3.1 26 60-85 20-45 (247)
317 2wsm_A Hydrogenase expression/ 94.7 0.017 5.9E-07 50.7 3.3 25 61-85 30-54 (221)
318 3cbq_A GTP-binding protein REM 94.7 0.013 4.4E-07 50.9 2.4 23 60-82 22-44 (195)
319 1mv5_A LMRA, multidrug resista 94.7 0.014 4.7E-07 53.2 2.7 24 62-85 29-52 (243)
320 1moz_A ARL1, ADP-ribosylation 94.7 0.012 4.2E-07 49.6 2.2 23 60-82 17-39 (183)
321 1rj9_A FTSY, signal recognitio 94.7 0.015 5.2E-07 55.0 3.0 24 62-85 103-126 (304)
322 1fzq_A ADP-ribosylation factor 94.7 0.017 5.8E-07 49.3 3.1 25 60-84 15-39 (181)
323 2dr3_A UPF0273 protein PH0284; 94.7 0.018 6.1E-07 51.3 3.3 33 63-95 25-61 (247)
324 4g1u_C Hemin import ATP-bindin 94.7 0.014 4.7E-07 54.2 2.6 24 62-85 38-61 (266)
325 2r44_A Uncharacterized protein 94.7 0.013 4.5E-07 55.2 2.6 24 63-86 48-71 (331)
326 3pvs_A Replication-associated 94.7 0.024 8.1E-07 56.5 4.5 24 63-86 52-75 (447)
327 2d2e_A SUFC protein; ABC-ATPas 94.7 0.017 5.8E-07 52.9 3.2 22 63-84 31-52 (250)
328 1g6h_A High-affinity branched- 94.7 0.014 4.8E-07 53.6 2.7 23 63-85 35-57 (257)
329 1m2o_B GTP-binding protein SAR 94.7 0.018 6E-07 49.6 3.2 24 61-84 23-46 (190)
330 2o52_A RAS-related protein RAB 94.6 0.015 5.2E-07 50.5 2.7 25 60-84 24-48 (200)
331 2ff7_A Alpha-hemolysin translo 94.6 0.014 4.8E-07 53.4 2.6 24 62-85 36-59 (247)
332 2dhr_A FTSH; AAA+ protein, hex 94.6 0.022 7.5E-07 57.6 4.3 34 63-96 66-100 (499)
333 1x3s_A RAS-related protein RAB 94.6 0.018 6.2E-07 49.0 3.2 24 61-84 15-38 (195)
334 1ksh_A ARF-like protein 2; sma 94.6 0.018 6.1E-07 48.9 3.1 24 60-83 17-40 (186)
335 2q3h_A RAS homolog gene family 94.6 0.017 5.7E-07 49.8 2.9 24 60-83 19-42 (201)
336 1ji0_A ABC transporter; ATP bi 94.6 0.015 5E-07 53.0 2.7 23 63-85 34-56 (240)
337 1g8p_A Magnesium-chelatase 38 94.6 0.011 3.8E-07 55.7 2.0 24 63-86 47-70 (350)
338 2iwr_A Centaurin gamma 1; ANK 94.6 0.014 4.6E-07 49.2 2.3 24 61-84 7-30 (178)
339 1zj6_A ADP-ribosylation factor 94.6 0.018 6.1E-07 49.1 3.1 24 61-84 16-39 (187)
340 1sgw_A Putative ABC transporte 94.6 0.016 5.3E-07 52.1 2.8 24 62-85 36-59 (214)
341 1sxj_C Activator 1 40 kDa subu 94.6 0.019 6.5E-07 54.5 3.4 22 64-85 49-70 (340)
342 3cf2_A TER ATPase, transitiona 94.6 0.021 7.3E-07 61.0 4.1 30 62-92 239-268 (806)
343 2ixe_A Antigen peptide transpo 94.6 0.016 5.4E-07 53.8 2.8 24 62-85 46-69 (271)
344 3q3j_B RHO-related GTP-binding 94.6 0.02 6.9E-07 50.4 3.3 25 60-84 26-50 (214)
345 3cr8_A Sulfate adenylyltranfer 94.6 0.011 3.7E-07 60.6 1.8 27 60-86 368-394 (552)
346 1sxj_D Activator 1 41 kDa subu 94.5 0.02 6.7E-07 54.0 3.5 22 64-85 61-82 (353)
347 2olj_A Amino acid ABC transpor 94.5 0.016 5.3E-07 53.8 2.7 23 63-85 52-74 (263)
348 2gza_A Type IV secretion syste 94.5 0.018 6.1E-07 55.7 3.1 25 62-86 176-200 (361)
349 2pze_A Cystic fibrosis transme 94.5 0.016 5.5E-07 52.3 2.7 24 62-85 35-58 (229)
350 2orw_A Thymidine kinase; TMTK, 94.5 0.018 6.2E-07 50.2 2.9 23 63-85 5-27 (184)
351 3czp_A Putative polyphosphate 94.5 0.014 4.8E-07 59.1 2.4 27 60-86 299-325 (500)
352 3fvq_A Fe(3+) IONS import ATP- 94.5 0.018 6.1E-07 55.9 3.1 23 63-85 32-54 (359)
353 2ghi_A Transport protein; mult 94.5 0.017 5.9E-07 53.2 2.8 24 62-85 47-70 (260)
354 3e70_C DPA, signal recognition 94.5 0.018 6.1E-07 55.1 3.0 25 61-85 129-153 (328)
355 2fu5_C RAS-related protein RAB 94.5 0.011 3.9E-07 49.9 1.4 24 60-83 7-30 (183)
356 1vpl_A ABC transporter, ATP-bi 94.4 0.017 5.7E-07 53.3 2.7 23 63-85 43-65 (256)
357 1vma_A Cell division protein F 94.4 0.018 6.3E-07 54.5 3.0 24 62-85 105-128 (306)
358 2v1u_A Cell division control p 94.4 0.018 6.3E-07 54.6 3.0 23 63-85 46-68 (387)
359 2qi9_C Vitamin B12 import ATP- 94.4 0.017 5.8E-07 53.0 2.7 23 63-85 28-50 (249)
360 2cjw_A GTP-binding protein GEM 94.4 0.025 8.4E-07 48.9 3.5 25 61-85 6-30 (192)
361 2zu0_C Probable ATP-dependent 94.4 0.021 7.3E-07 52.8 3.3 23 62-84 47-69 (267)
362 2gf0_A GTP-binding protein DI- 94.4 0.025 8.5E-07 48.4 3.5 24 61-84 8-31 (199)
363 3b9q_A Chloroplast SRP recepto 94.4 0.023 7.9E-07 53.6 3.5 25 61-85 100-124 (302)
364 2bcg_Y Protein YP2, GTP-bindin 94.4 0.022 7.5E-07 49.3 3.1 25 60-84 7-31 (206)
365 2fh5_B SR-beta, signal recogni 94.4 0.022 7.4E-07 49.7 3.1 24 61-84 7-30 (214)
366 2yyz_A Sugar ABC transporter, 94.3 0.021 7.1E-07 55.4 3.2 23 63-85 31-53 (359)
367 1z47_A CYSA, putative ABC-tran 94.3 0.021 7.2E-07 55.3 3.2 23 63-85 43-65 (355)
368 2ihy_A ABC transporter, ATP-bi 94.3 0.018 6.2E-07 53.7 2.6 24 62-85 48-71 (279)
369 3rlf_A Maltose/maltodextrin im 94.3 0.022 7.5E-07 55.7 3.2 23 63-85 31-53 (381)
370 3m6a_A ATP-dependent protease 94.3 0.027 9.3E-07 57.4 4.0 33 63-95 110-143 (543)
371 1sxj_E Activator 1 40 kDa subu 94.3 0.022 7.6E-07 53.9 3.2 22 64-85 39-60 (354)
372 1hqc_A RUVB; extended AAA-ATPa 94.3 0.019 6.5E-07 53.6 2.6 24 63-86 40-63 (324)
373 2g3y_A GTP-binding protein GEM 94.3 0.025 8.4E-07 50.3 3.2 24 60-83 36-59 (211)
374 2b6h_A ADP-ribosylation factor 94.3 0.024 8.1E-07 48.9 3.1 24 60-83 28-51 (192)
375 2it1_A 362AA long hypothetical 94.2 0.022 7.7E-07 55.2 3.2 23 63-85 31-53 (362)
376 4gzl_A RAS-related C3 botulinu 94.2 0.025 8.5E-07 49.3 3.2 24 61-84 30-53 (204)
377 2ewv_A Twitching motility prot 94.2 0.021 7.2E-07 55.5 3.0 23 63-85 138-160 (372)
378 2pjz_A Hypothetical protein ST 94.2 0.02 6.9E-07 53.0 2.7 24 61-84 30-53 (263)
379 1v43_A Sugar-binding transport 94.2 0.023 7.8E-07 55.4 3.2 23 63-85 39-61 (372)
380 1nlf_A Regulatory protein REPA 94.2 0.023 7.9E-07 52.4 3.1 22 62-83 31-52 (279)
381 2nq2_C Hypothetical ABC transp 94.2 0.02 6.8E-07 52.6 2.6 23 63-85 33-55 (253)
382 2atx_A Small GTP binding prote 94.2 0.026 9E-07 48.2 3.2 25 60-84 17-41 (194)
383 3k53_A Ferrous iron transport 94.2 0.024 8.1E-07 52.1 3.1 23 62-84 4-26 (271)
384 1g29_1 MALK, maltose transport 94.2 0.024 8.1E-07 55.3 3.2 23 63-85 31-53 (372)
385 1ojl_A Transcriptional regulat 94.2 0.04 1.4E-06 51.8 4.7 35 62-96 26-64 (304)
386 1f6b_A SAR1; gtpases, N-termin 94.1 0.021 7.2E-07 49.6 2.5 23 61-83 25-47 (198)
387 2fv8_A H6, RHO-related GTP-bin 94.1 0.026 8.8E-07 49.1 3.1 24 61-84 25-48 (207)
388 2qby_A CDC6 homolog 1, cell di 94.1 0.026 8.8E-07 53.4 3.3 23 63-85 47-69 (386)
389 3jvv_A Twitching mobility prot 94.1 0.026 8.9E-07 54.6 3.3 23 63-85 125-147 (356)
390 2yz2_A Putative ABC transporte 94.1 0.023 7.8E-07 52.6 2.8 23 63-85 35-57 (266)
391 3th5_A RAS-related C3 botulinu 93.1 0.009 3.1E-07 51.9 0.0 24 60-83 29-52 (204)
392 2j1l_A RHO-related GTP-binding 94.1 0.026 8.9E-07 49.5 3.1 24 60-83 33-56 (214)
393 2qm8_A GTPase/ATPase; G protei 94.1 0.028 9.5E-07 53.8 3.5 24 61-84 55-78 (337)
394 1fnn_A CDC6P, cell division co 94.1 0.028 9.6E-07 53.5 3.5 23 63-85 46-68 (389)
395 2qgz_A Helicase loader, putati 94.1 0.029 1E-06 52.9 3.5 23 62-84 153-175 (308)
396 2qu8_A Putative nucleolar GTP- 94.0 0.031 1E-06 49.6 3.4 25 60-84 28-52 (228)
397 2xtp_A GTPase IMAP family memb 94.0 0.027 9.2E-07 51.1 3.1 25 60-84 21-45 (260)
398 4dey_A Voltage-dependent L-typ 94.0 0.073 2.5E-06 51.0 6.2 33 60-92 141-180 (337)
399 1ypw_A Transitional endoplasmi 94.0 0.029 1E-06 60.0 3.8 29 62-91 239-267 (806)
400 1iqp_A RFCS; clamp loader, ext 94.0 0.03 1E-06 51.9 3.5 23 63-85 48-70 (327)
401 3tqf_A HPR(Ser) kinase; transf 94.0 0.029 1E-06 49.0 3.1 31 63-96 18-48 (181)
402 3te6_A Regulatory protein SIR3 94.0 0.017 5.8E-07 55.1 1.7 24 62-85 46-69 (318)
403 2px0_A Flagellar biosynthesis 94.0 0.025 8.6E-07 53.2 2.9 24 62-85 106-129 (296)
404 2pt7_A CAG-ALFA; ATPase, prote 94.0 0.024 8.1E-07 54.2 2.7 24 63-86 173-196 (330)
405 2qnr_A Septin-2, protein NEDD5 93.9 0.025 8.5E-07 53.2 2.7 24 60-83 17-40 (301)
406 3d31_A Sulfate/molybdate ABC t 93.9 0.019 6.6E-07 55.4 1.9 23 63-85 28-50 (348)
407 2qby_B CDC6 homolog 3, cell di 93.9 0.031 1E-06 53.3 3.3 23 63-85 47-69 (384)
408 2j0v_A RAC-like GTP-binding pr 93.9 0.031 1.1E-06 48.6 3.1 25 60-84 8-32 (212)
409 3hu3_A Transitional endoplasmi 93.9 0.048 1.6E-06 55.0 4.9 28 63-91 240-267 (489)
410 2npi_A Protein CLP1; CLP1-PCF1 93.9 0.033 1.1E-06 55.8 3.6 25 61-85 138-162 (460)
411 2z4s_A Chromosomal replication 93.8 0.033 1.1E-06 55.2 3.5 35 62-96 131-171 (440)
412 3gd7_A Fusion complex of cysti 93.8 0.03 1E-06 54.9 3.1 22 62-83 48-69 (390)
413 3iby_A Ferrous iron transport 93.8 0.031 1.1E-06 51.2 3.0 23 62-84 2-24 (256)
414 2x77_A ADP-ribosylation factor 93.8 0.025 8.4E-07 48.2 2.2 23 60-82 21-43 (189)
415 2chq_A Replication factor C sm 93.7 0.036 1.2E-06 51.2 3.4 23 63-85 40-62 (319)
416 2www_A Methylmalonic aciduria 93.7 0.036 1.2E-06 53.2 3.5 24 61-84 74-97 (349)
417 2og2_A Putative signal recogni 93.7 0.034 1.2E-06 53.9 3.3 36 61-96 157-195 (359)
418 2yc2_C IFT27, small RAB-relate 93.7 0.012 4E-07 50.8 -0.0 25 60-84 19-43 (208)
419 2qen_A Walker-type ATPase; unk 93.7 0.052 1.8E-06 50.6 4.5 31 63-94 33-63 (350)
420 3nh6_A ATP-binding cassette SU 93.6 0.02 6.9E-07 54.3 1.5 24 62-85 81-104 (306)
421 3gj0_A GTP-binding nuclear pro 93.6 0.028 9.7E-07 49.3 2.4 26 60-85 14-40 (221)
422 3cf2_A TER ATPase, transitiona 93.6 0.05 1.7E-06 58.1 4.7 34 60-94 510-543 (806)
423 1pzn_A RAD51, DNA repair and r 93.6 0.034 1.2E-06 53.4 3.1 23 63-85 133-155 (349)
424 3cpj_B GTP-binding protein YPT 93.6 0.039 1.3E-06 48.6 3.2 25 60-84 12-36 (223)
425 1jr3_A DNA polymerase III subu 93.6 0.035 1.2E-06 52.6 3.1 24 63-86 40-63 (373)
426 1p9r_A General secretion pathw 93.6 0.035 1.2E-06 54.9 3.1 24 63-86 169-192 (418)
427 3tui_C Methionine import ATP-b 93.5 0.037 1.3E-06 53.8 3.2 23 63-85 56-78 (366)
428 1u0j_A DNA replication protein 93.5 0.051 1.7E-06 50.5 4.0 23 64-86 107-129 (267)
429 2bbs_A Cystic fibrosis transme 93.5 0.032 1.1E-06 52.4 2.6 24 62-85 65-88 (290)
430 3kta_A Chromosome segregation 93.5 0.04 1.4E-06 46.9 3.0 24 63-86 28-51 (182)
431 1ypw_A Transitional endoplasmi 93.5 0.035 1.2E-06 59.4 3.2 37 62-98 512-549 (806)
432 1sxj_B Activator 1 37 kDa subu 93.5 0.043 1.5E-06 50.7 3.5 22 64-85 45-66 (323)
433 3p32_A Probable GTPase RV1496/ 93.4 0.036 1.2E-06 53.2 3.0 24 62-85 80-103 (355)
434 1oxx_K GLCV, glucose, ABC tran 93.4 0.021 7.1E-07 55.3 1.2 23 63-85 33-55 (353)
435 3nbx_X ATPase RAVA; AAA+ ATPas 93.4 0.03 1E-06 56.6 2.5 24 63-86 43-66 (500)
436 2yhs_A FTSY, cell division pro 93.4 0.041 1.4E-06 55.6 3.3 38 61-98 293-333 (503)
437 3pxg_A Negative regulator of g 93.3 0.04 1.4E-06 55.0 3.1 23 63-85 203-225 (468)
438 2vhj_A Ntpase P4, P4; non- hyd 93.3 0.048 1.6E-06 52.2 3.5 29 64-93 126-156 (331)
439 3b1v_A Ferrous iron uptake tra 93.2 0.046 1.6E-06 50.7 3.2 24 61-84 3-26 (272)
440 2b8t_A Thymidine kinase; deoxy 93.2 0.045 1.5E-06 49.5 3.0 23 63-85 14-36 (223)
441 4dhe_A Probable GTP-binding pr 93.2 0.028 9.4E-07 49.3 1.5 24 61-84 29-52 (223)
442 3u61_B DNA polymerase accessor 93.1 0.058 2E-06 50.4 3.8 23 64-86 51-73 (324)
443 3o47_A ADP-ribosylation factor 93.1 0.06 2E-06 51.2 3.9 24 60-83 164-187 (329)
444 2obl_A ESCN; ATPase, hydrolase 93.1 0.048 1.7E-06 52.5 3.2 30 57-86 67-96 (347)
445 2dpy_A FLII, flagellum-specifi 93.1 0.064 2.2E-06 53.3 4.2 30 57-86 153-182 (438)
446 3hr8_A Protein RECA; alpha and 93.0 0.051 1.8E-06 52.6 3.3 34 63-96 63-100 (356)
447 2oap_1 GSPE-2, type II secreti 93.0 0.046 1.6E-06 55.4 3.1 24 63-86 262-285 (511)
448 3kl4_A SRP54, signal recogniti 93.0 0.039 1.3E-06 54.8 2.4 25 61-85 97-121 (433)
449 1yrb_A ATP(GTP)binding protein 92.9 0.055 1.9E-06 48.7 3.2 23 62-84 15-37 (262)
450 3lda_A DNA repair protein RAD5 92.9 0.05 1.7E-06 53.5 3.1 20 63-82 180-199 (400)
451 3dm5_A SRP54, signal recogniti 92.9 0.048 1.7E-06 54.3 3.0 24 61-84 100-123 (443)
452 2yv5_A YJEQ protein; hydrolase 92.9 0.054 1.8E-06 50.9 3.2 22 63-85 167-188 (302)
453 3r7w_A Gtpase1, GTP-binding pr 92.9 0.048 1.6E-06 51.2 2.8 25 61-85 3-27 (307)
454 3k1j_A LON protease, ATP-depen 92.9 0.056 1.9E-06 55.7 3.5 24 63-86 62-85 (604)
455 2zts_A Putative uncharacterize 92.9 0.063 2.1E-06 47.7 3.5 34 63-96 32-70 (251)
456 4djt_A GTP-binding nuclear pro 92.8 0.023 8E-07 49.6 0.6 23 60-82 10-32 (218)
457 1mky_A Probable GTP-binding pr 92.8 0.054 1.8E-06 53.5 3.2 25 61-85 180-204 (439)
458 3a1s_A Iron(II) transport prot 92.8 0.056 1.9E-06 49.5 3.1 24 61-84 5-28 (258)
459 2xtz_A Guanine nucleotide-bind 92.8 0.055 1.9E-06 52.3 3.1 25 61-85 9-33 (354)
460 2rcn_A Probable GTPase ENGC; Y 92.8 0.057 1.9E-06 52.3 3.2 23 63-85 217-239 (358)
461 2qag_C Septin-7; cell cycle, c 92.7 0.049 1.7E-06 53.8 2.8 25 60-84 30-54 (418)
462 2r8r_A Sensor protein; KDPD, P 92.7 0.075 2.5E-06 48.2 3.7 25 60-84 5-29 (228)
463 2dby_A GTP-binding protein; GD 92.6 0.07 2.4E-06 51.8 3.6 24 61-84 1-24 (368)
464 3l0i_B RAS-related protein RAB 92.6 0.012 4.1E-07 50.9 -1.7 23 60-82 32-54 (199)
465 1nij_A Hypothetical protein YJ 92.5 0.053 1.8E-06 51.3 2.6 22 63-84 6-27 (318)
466 1ega_A Protein (GTP-binding pr 92.5 0.061 2.1E-06 50.4 3.1 23 62-84 9-31 (301)
467 1u0l_A Probable GTPase ENGC; p 92.5 0.061 2.1E-06 50.4 3.0 23 63-85 171-193 (301)
468 2qag_B Septin-6, protein NEDD5 92.5 0.052 1.8E-06 53.8 2.7 21 64-84 45-65 (427)
469 2zr9_A Protein RECA, recombina 92.5 0.067 2.3E-06 51.4 3.3 34 63-96 63-100 (349)
470 1zu4_A FTSY; GTPase, signal re 92.5 0.062 2.1E-06 51.1 3.0 24 62-85 106-129 (320)
471 4dkx_A RAS-related protein RAB 92.3 0.078 2.7E-06 47.3 3.3 23 62-84 14-36 (216)
472 3c5h_A Glucocorticoid receptor 92.3 0.1 3.5E-06 47.4 4.1 24 60-83 18-50 (255)
473 2v3c_C SRP54, signal recogniti 92.3 0.053 1.8E-06 53.8 2.3 24 62-85 100-123 (432)
474 3t5d_A Septin-7; GTP-binding p 92.2 0.069 2.4E-06 49.1 2.8 23 60-82 7-29 (274)
475 3i8s_A Ferrous iron transport 92.1 0.071 2.4E-06 49.2 2.9 23 62-84 4-26 (274)
476 3upu_A ATP-dependent DNA helic 92.1 0.069 2.4E-06 53.0 3.0 23 63-85 47-69 (459)
477 2aka_B Dynamin-1; fusion prote 92.1 0.087 3E-06 48.4 3.4 24 61-84 26-49 (299)
478 2p67_A LAO/AO transport system 92.0 0.077 2.6E-06 50.6 3.0 24 61-84 56-79 (341)
479 1v5w_A DMC1, meiotic recombina 92.0 0.082 2.8E-06 50.5 3.2 22 63-84 124-145 (343)
480 3pxi_A Negative regulator of g 92.0 0.074 2.5E-06 56.2 3.1 23 63-85 203-225 (758)
481 1tq4_A IIGP1, interferon-induc 91.9 0.078 2.7E-06 52.3 3.0 23 63-85 71-93 (413)
482 3pxi_A Negative regulator of g 91.9 0.12 4E-06 54.7 4.6 35 63-97 523-561 (758)
483 2z43_A DNA repair and recombin 91.9 0.088 3E-06 49.8 3.3 22 63-84 109-130 (324)
484 2fna_A Conserved hypothetical 91.8 0.094 3.2E-06 48.9 3.3 32 63-94 32-64 (357)
485 1yqt_A RNAse L inhibitor; ATP- 91.7 0.094 3.2E-06 53.4 3.5 25 61-85 47-71 (538)
486 1r6b_X CLPA protein; AAA+, N-t 91.6 0.11 3.9E-06 54.7 4.1 34 63-96 490-524 (758)
487 3euj_A Chromosome partition pr 91.6 0.091 3.1E-06 52.9 3.2 23 63-85 31-53 (483)
488 3b5x_A Lipid A export ATP-bind 91.6 0.089 3.1E-06 53.9 3.2 24 62-85 370-393 (582)
489 3ice_A Transcription terminati 91.5 0.12 4.2E-06 50.7 3.9 29 56-84 169-197 (422)
490 2i1q_A DNA repair and recombin 91.5 0.096 3.3E-06 49.2 3.1 22 63-84 100-121 (322)
491 3b60_A Lipid A export ATP-bind 91.5 0.081 2.8E-06 54.3 2.7 25 62-86 370-394 (582)
492 1tf7_A KAIC; homohexamer, hexa 91.5 0.091 3.1E-06 53.1 3.1 19 64-82 42-62 (525)
493 1xx6_A Thymidine kinase; NESG, 91.5 0.1 3.5E-06 45.8 3.0 23 63-85 10-32 (191)
494 1f2t_A RAD50 ABC-ATPase; DNA d 91.4 0.11 3.9E-06 43.4 3.2 22 63-84 25-46 (149)
495 3f9v_A Minichromosome maintena 91.4 0.052 1.8E-06 56.0 1.2 27 60-86 326-352 (595)
496 1j8m_F SRP54, signal recogniti 91.4 0.075 2.5E-06 50.0 2.2 25 61-85 98-122 (297)
497 4ag6_A VIRB4 ATPase, type IV s 91.3 0.096 3.3E-06 50.6 3.0 22 63-84 37-58 (392)
498 1u94_A RECA protein, recombina 91.3 0.11 3.9E-06 50.0 3.5 33 63-96 65-102 (356)
499 1ni3_A YCHF GTPase, YCHF GTP-b 91.3 0.11 3.9E-06 50.8 3.5 23 61-83 20-42 (392)
500 3e1s_A Exodeoxyribonuclease V, 91.3 0.093 3.2E-06 53.9 3.0 22 63-84 206-227 (574)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=1.8e-35 Score=271.21 Aligned_cols=176 Identities=34% Similarity=0.539 Sum_probs=149.9
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
+.-|+|+|||||||||||++|+++|+ +.|||+||++|+++..++++|..+.+++..|.+++++.. +..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g-~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~-----------~~l 96 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFH-FNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVV-----------LAL 96 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHC-CEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHH-----------HHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHC-CceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHH-----------HHH
Confidence 33467799999999999999999997 999999999999999999999999999999999998873 444
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+..|+...
T Consensus 97 v~~~l~~~------------------------------------------------------------------------ 104 (217)
T 3umf_A 97 LKEAMIKL------------------------------------------------------------------------ 104 (217)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHhhc------------------------------------------------------------------------
Confidence 55555320
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCH
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPD 300 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~d 300 (363)
.+...+|++||||||.+||+.|.+.+..+++||+|+||+
T Consensus 105 -----------------------------------------~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~ 143 (217)
T 3umf_A 105 -----------------------------------------VDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSE 143 (217)
T ss_dssp -----------------------------------------TTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCH
T ss_pred -----------------------------------------cccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCH
Confidence 012245999999999999999999988999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCcccccccccC
Q psy11897 301 DVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVKS 361 (363)
Q Consensus 301 e~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~~ 361 (363)
+++.+||.+|+...+|.||++|.+++||+.|++++.|+++||+++ ++.||++.+.+++.++
T Consensus 144 e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~ 206 (217)
T 3umf_A 144 EVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDK 206 (217)
T ss_dssp HHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHH
T ss_pred HHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999876 7899999998887653
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=3.7e-34 Score=260.55 Aligned_cols=171 Identities=30% Similarity=0.512 Sum_probs=149.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
|+|+|+|||||||||||++|+++|+ +.|||+||+||+++..++.+|..++.++..|.+++++.. +..+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g-~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv-----------~~lv 68 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG-FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLI-----------IALI 68 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHH-----------HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC-CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHH-----------HHHH
Confidence 5699999999999999999999997 999999999999999999999999999999999998873 4444
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..++..
T Consensus 69 ~~~l~~-------------------------------------------------------------------------- 74 (206)
T 3sr0_A 69 EEVFPK-------------------------------------------------------------------------- 74 (206)
T ss_dssp HHHCCS--------------------------------------------------------------------------
T ss_pred HHhhcc--------------------------------------------------------------------------
Confidence 555432
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~L~ 297 (363)
..+|++||||||.+||+.|.+. ...+|.||+|+
T Consensus 75 -------------------------------------------~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~ 111 (206)
T 3sr0_A 75 -------------------------------------------HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFE 111 (206)
T ss_dssp -------------------------------------------SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred -------------------------------------------CCceEecCCchhHHHHHHHHhhHHHhccccceeeecC
Confidence 1248999999999999998643 45799999999
Q ss_pred CCHHHHHHHHhhcCCC--------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCcccc
Q psy11897 298 APDDVILARLVKRGLT--------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKR 355 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~~--------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~ 355 (363)
||++++.+|+.+|+.+ .+|.||++|.+++||+.|++++.|+++||+++ ++.||++.+.
T Consensus 112 v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~ 191 (206)
T 3sr0_A 112 VPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPV 191 (206)
T ss_dssp CCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCH
T ss_pred CCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCH
Confidence 9999999999999632 35889999999999999999999999999986 7789999998
Q ss_pred cccccC
Q psy11897 356 RESVKS 361 (363)
Q Consensus 356 ~~~~~~ 361 (363)
+++.++
T Consensus 192 ~eV~~~ 197 (206)
T 3sr0_A 192 EEVYRQ 197 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.97 E-value=3.2e-31 Score=244.51 Aligned_cols=176 Identities=34% Similarity=0.475 Sum_probs=144.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
-|++-|+|+|||||||||++|+++|+ +.+||+|+++|+++..++.+|..+++++.+|.+++++.. +..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g-~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~-----------~~l 75 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG-IPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLI-----------IGL 75 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT-CCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHH-----------HHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC-CCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHH-----------HHH
Confidence 36888999999999999999999997 999999999999999999999999999999999888773 444
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+.+|+...
T Consensus 76 l~~~l~~~------------------------------------------------------------------------ 83 (230)
T 3gmt_A 76 VKERLKEA------------------------------------------------------------------------ 83 (230)
T ss_dssp HHHHHHSG------------------------------------------------------------------------
T ss_pred HHHHHhCc------------------------------------------------------------------------
Confidence 56666531
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCH
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPD 300 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~d 300 (363)
....+||+||||||..||+.|.+....+|.||+|+||+
T Consensus 84 ------------------------------------------~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~ 121 (230)
T 3gmt_A 84 ------------------------------------------DCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPF 121 (230)
T ss_dssp ------------------------------------------GGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCH
T ss_pred ------------------------------------------ccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCH
Confidence 01225899999999999999998877899999999999
Q ss_pred HHHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhh---------
Q psy11897 301 DVILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKS--------- 344 (363)
Q Consensus 301 e~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~--------- 344 (363)
+++.+||.+|+.+ .+|.||++|.+++||+.|++++.||++||.+
T Consensus 122 e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~ 201 (230)
T 3gmt_A 122 SEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENG 201 (230)
T ss_dssp HHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTT
T ss_pred HHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 9999999999742 1489999999999999999999999999996
Q ss_pred ----cceeecCcccccccccCC
Q psy11897 345 ----HIAKVNFLHKRRESVKSP 362 (363)
Q Consensus 345 ----~~~~v~~~~~~~~~~~~~ 362 (363)
.++.||++.+.+++.+++
T Consensus 202 ~~~~~l~~idg~~~~~eV~~~i 223 (230)
T 3gmt_A 202 LKAPAYRKISGLGAVEEIRARV 223 (230)
T ss_dssp BCCCEEEEECC-----------
T ss_pred ccCCeEEEEECCCCHHHHHHHH
Confidence 488999999999988764
No 4
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus}
Probab=99.97 E-value=3.6e-31 Score=257.44 Aligned_cols=178 Identities=30% Similarity=0.511 Sum_probs=154.0
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHhC-----CccccccccCCCCCCCccchhhhhhhhcCCeEEECCeeEEeecC
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQG-----GLVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQN 162 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~g-----~~~~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~~n 162 (363)
.+.|+++.-+++.|.+ .|+.+.++...+ ++.+.+.|. .+++|+|++++|++|||++|+|.++|++|+|++|
T Consensus 20 ~~tL~n~~g~~v~i~~---~GA~l~sl~~~~~dvvlg~~~~~~y~-~~~~~~G~~lgp~anRI~~g~f~~~G~~y~L~~N 95 (338)
T 3imh_A 20 EITLENDAGMAVKVLN---YGATLEKVLLDGENMILSLNSPEDYS-KERNFLGGTVGRIAGRVRAGQWKHGNEIHQLPLN 95 (338)
T ss_dssp EEEEECSSSEEEEEET---BTTEEEEEEETTEECBCCCSSGGGGG-TSCCCTTCEECSBCSEEGGGEEEETTEEEECCCC
T ss_pred EEEEECCCcEEEEEec---CCcEEEEEEECCEEEEecCCChHHhc-cCCCeEeeEEEeeCCEecCCEEEECCEEEECCCC
Confidence 6778877545888877 788777765433 233456664 4678999999999999999999999999999999
Q ss_pred CCCCccCCCCcCccccceEeee----eCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEeCCCeeecccc
Q psy11897 163 VDVNHLHGGFKGFDKVIWSTYV----DKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTN 238 (363)
Q Consensus 163 ~~~~~lHG~~~g~~~~~w~~~~----~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~~~~p~~l~~ 238 (363)
+++|+||||. ||+++.|++.. .+++|+|++.++++++||||++.++|+|+|+++++|.|+++++++++||+|+|+
T Consensus 96 ~g~n~LHGg~-g~~~~~W~v~~~~~~~~~~v~l~l~s~d~~~gyPg~~~~~vtY~L~~~~~L~i~~~a~~d~~tp~nlg~ 174 (338)
T 3imh_A 96 DGDNHIHGGI-GTDMHVWDFRPSCDSEHARVDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAVSDKLTIFNPVN 174 (338)
T ss_dssp BTTBEETTSS-CGGGSBCEEEEEECSSEEEEEEEEEECTTGGGCCSCEEEEEEEEEETTSEEEEEEEEEESSSEECBCEE
T ss_pred CCCcCCCCCC-CcCCceEEEEeeeecCCCEEEEEEECCccccCCCeEEEEEEEEEEecCCeEEEEEEEecCCCeEEEEee
Confidence 9999999999 99999999732 246899999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccccccceEEEEeecceeeecc-CCCCC
Q psy11897 239 HSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 239 H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
||||||+| ++.+|.|+++++.++.+++ ..|..
T Consensus 175 HpYFnL~g------~i~~~~L~i~a~~~~~~d~~~iPTG 207 (338)
T 3imh_A 175 HTYFNLGE------RAEDLNLQMNADYYLPVDEAGLPDR 207 (338)
T ss_dssp CCEECTTS------CGGGCEEEECEEEECCBCTTSSBSS
T ss_pred CCEEeCCC------CcCCeEEEEEcCcEEEeCCccCCcC
Confidence 99999964 7899999999999999985 67753
No 5
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Probab=99.96 E-value=1e-30 Score=255.47 Aligned_cols=183 Identities=31% Similarity=0.448 Sum_probs=156.5
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHhCC-cc---cc-ccccCCCCCCCccchhhhhhhhcCCeEEECCeeEEeecC
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQGG-LV---PD-VSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQN 162 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~-~~---~~-~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~~n 162 (363)
.+.|+++.-+++.|.+ .|+.+.++..+|. ++ ++ +.| ..+++|+|++++|++|||++|+|.++|++|+|++|
T Consensus 14 ~~tL~n~~~~~v~i~~---~GA~l~sl~~~G~~vvlg~~~~~~y-~~~~~~~G~~lgp~anRI~~g~f~~~G~~y~L~~N 89 (347)
T 1nsx_A 14 LISLTNKAGVTISFTN---LGARIVDWQKDGKHLILGFDSAKEY-LEKDAYPGATVGPTAGRIKDGLVKISGKDYILNQN 89 (347)
T ss_dssp EEEEECTTSCEEEEET---BTTEEEEEEETTEESBCCCSSHHHH-HHTCSCTTCEECSBCSEEGGGEEEETTEEEECCCC
T ss_pred EEEEECCCceEEEEEc---cCcEEEEEEECCeEEEEeCCCHHHH-hhCCCeEeeEEcccCCcccCCEEEECCEEEEccCC
Confidence 6778776445888877 7887777664442 11 22 334 34678999999999999999999999999999999
Q ss_pred CCCCccCCCCcCccccceEee-eeCC---eEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEeCCCeeecccc
Q psy11897 163 VDVNHLHGGFKGFDKVIWSTY-VDKD---KVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTN 238 (363)
Q Consensus 163 ~~~~~lHG~~~g~~~~~w~~~-~~~~---~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~~~~p~~l~~ 238 (363)
+++|++|||..||+++.|++. ..++ +|+|++.++++++||||++.++|+|+|+++++|+|+++++++++||+|+|+
T Consensus 90 ~~~n~lHGg~~g~~~~~W~v~~~~~~~~~~v~l~l~s~d~~~gyPg~~~~~vtY~L~~~~~L~i~~~a~~d~~tp~nlg~ 169 (347)
T 1nsx_A 90 EGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTG 169 (347)
T ss_dssp BTTBEETTSTTCGGGSBCEEEEEECSSEEEEEEEEEECTTGGGCCSCEEEEEEEEEETTSEEEEEEEEEESSCEECBCEE
T ss_pred CCCcccCCCCcccccceEEEEEccCCcceEEEEEEECCCccCCCCeEEEEEEEEEECCCCeEEEEEEEEcCCCeEEeeec
Confidence 999999999999999999964 4566 899999999999999999999999999989999999999999999999999
Q ss_pred ccccccCCCCcccccccceEEEEeecceeeecc-C-CCCC
Q psy11897 239 HSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-G-YPRD 276 (363)
Q Consensus 239 H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-G-fPrt 276 (363)
||||||+|. .+.++.+|.|+++++.++.+++ . .|..
T Consensus 170 HpYFnl~g~--~~~~i~~~~L~i~a~~~~~~d~~~~iPtG 207 (347)
T 1nsx_A 170 NVYFNLNGD--ASESVENHGLRLAASRFVPLKDQTEIVRG 207 (347)
T ss_dssp CCEECTTSS--TTSCGGGSEEEECEEEECCBCSTTCCBCS
T ss_pred cceEecCCC--CCCceeceEEEEECCeEEEECCCCcCcCC
Confidence 999999875 3447899999999999998885 5 7753
No 6
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4
Probab=99.95 E-value=2.1e-29 Score=245.50 Aligned_cols=179 Identities=27% Similarity=0.420 Sum_probs=151.9
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHH---hCC---cc----ccccccCCCCCCCccchhhhhhhhcCCeEEECCeeE
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMK---QGG---LV----PDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENF 157 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~---~g~---~~----~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y 157 (363)
.+.|+.+.+ ++.|.. .|+.+.++.. +|. ++ +.+.|+. +++|+|++++|++|||++|+|.++|++|
T Consensus 15 ~~~L~~~~~-~~~i~~---~GA~l~sl~~~d~~G~~~dvvl~~~~~~~y~~-~~~~~G~~lgp~anRI~~g~f~~~G~~y 89 (339)
T 1lur_A 15 IEIANKQGL-TATLLP---FGATLAKLTFPDKNGKNQDLVLGFDTIDEFEK-DAASIGKTVGRVANRIKNSTLHFDGKQY 89 (339)
T ss_dssp EEEECSSSC-EEEEET---BTTEEEEEEEECTTSCEEECBCCCSSHHHHHH-CSSCTTCEECSBCSEEGGGEEEETTEEE
T ss_pred EEEEeCCCE-EEEEec---CCcEEEEEEEECCCCCEeEEEEcCCChHHhcc-CCCccccEecCcCCeecCCEEEECCEEE
Confidence 566754444 777776 7887777654 342 11 2244654 5678999999999999999999999999
Q ss_pred EeecCCCCCccCCCCcCccccceEe-eeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEeCCCeeecc
Q psy11897 158 TISQNVDVNHLHGGFKGFDKVIWST-YVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINL 236 (363)
Q Consensus 158 ~L~~n~~~~~lHG~~~g~~~~~w~~-~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~~~~p~~l 236 (363)
+|+.|+++|++|||..||+++.|++ ...+++|+|++.++++++||||++.++++|+|+++++|+|+++++++++||+++
T Consensus 90 ~L~~N~~~n~lHGg~~g~~~~~W~v~~~~~~~v~l~l~s~d~~~gyPg~~~~~vtY~L~~~~~L~i~~~a~~d~~tp~~l 169 (339)
T 1lur_A 90 TMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLAL 169 (339)
T ss_dssp ECCCSBTTBEETTCTTSGGGSBCEEEEEETTEEEEEEEEEHHHHSSSSEEEEEEEEEECTTSEEEEEEEEECSSCEECBC
T ss_pred ECCCCCCCcccCCCCcccccceeeEEEccCCEEEEEEECCCcCCCCCeEEEEEEEEEECCCCeEEEEEEEeCCCCeEEee
Confidence 9999999999999999999999996 456789999999988889999999999999999889999999999999999999
Q ss_pred ccccccccCCCCcccccccceEEEEeecceeeecc-CCCC
Q psy11897 237 TNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPR 275 (363)
Q Consensus 237 ~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPr 275 (363)
|+||||||+|. .++.+|.|++++..++.+++ ..|.
T Consensus 170 g~HpYFnl~~~----~~i~~~~L~i~a~~~~~~d~~~iPt 205 (339)
T 1lur_A 170 TNHAYWNLDGS----DTVAEHFLEMEADEFVEVDDTFCPT 205 (339)
T ss_dssp EECCEECSSCC----SCSTTCEEEECEEEEEEECTTSCEE
T ss_pred eccceEECCCC----CcccCEEEEEECCEEEEeCCCCccC
Confidence 99999999874 26899999999999988875 5663
No 7
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Probab=99.95 E-value=1.9e-28 Score=239.20 Aligned_cols=181 Identities=37% Similarity=0.661 Sum_probs=153.3
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHh---CC-------ccccccccCCCCCCCccchhhhhhhhcCCeEEECCeeE
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQ---GG-------LVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENF 157 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~---g~-------~~~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y 157 (363)
.+.|+.+. +++.|.. .|+.+.++... |. +...+.| ..++.|+|++++|++|||++|+|.++|++|
T Consensus 23 ~~~L~n~~-~~~~i~~---~GA~l~s~~~~~~~G~~~~vv~g~~~~~~y-~~~~~~~G~~l~p~~nRi~~g~f~~~G~~y 97 (344)
T 1snz_A 23 KFQLQSDL-LRVDIIS---WGCTITALEVKDRQGRASDVVLGFAELEGY-LQKQPYFGAVIGRVANRIAKGTFKVDGKEY 97 (344)
T ss_dssp EEEEECSS-CEEEEET---BTTEEEEEEEECTTSCEEECBCCCSSHHHH-HSSCSCTTCEECSBCSEEGGGEEEETTEEE
T ss_pred EEEEEcCC-EEEEEec---CCcEEEEEEecCCCCCEeeEEECCCChHHH-hhCCCceeeEecCcCCcccCCEEEECCEEE
Confidence 67788774 4888876 88888776532 21 1223344 345788999999999999999999999999
Q ss_pred EeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEeCCCeeeccc
Q psy11897 158 TISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLT 237 (363)
Q Consensus 158 ~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~~~~p~~l~ 237 (363)
+|++|+++|++|||..||+++.|++....++|+|++.+++++++|||++.++++|+|+++ +|+|+++++++++||+++|
T Consensus 98 ~L~~N~~~~~lHG~~~g~~~~~W~v~~~~~~v~l~l~~~~~~~gyP~~~~~~vty~L~~~-~L~i~~~a~~d~~~p~~~~ 176 (344)
T 1snz_A 98 HLAINKEPNSLHGGVRGFDKVLWTPRVLSNGVQFSRISPDGEEGYPGELKVWVTYTLDGG-ELIVNYRAQASQATPVNLT 176 (344)
T ss_dssp ECCCTBTTBEETTSSSCGGGSBCEEEEETTEEEEEEEECTTGGGCCSCEEEEEEEEEETT-EEEEEEEEEESSCEECBCE
T ss_pred ECCCCCCCcccCCCccccccceeeEEEeCCEEEEEEECCCcCCCCCEEEEEEEEEEEcCC-EEEEEEEEEeCCceEEecc
Confidence 999999999999999999999999643337899999998899999999999999999887 9999999999999999999
Q ss_pred cccccccCCCCcccccccceEEEEeecceeeecc-CCCCC
Q psy11897 238 NHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 238 ~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
+||||||++. .+.++.+|.|++++..++.+++ ..|..
T Consensus 177 ~H~YFnl~~~--~~~~i~~~~L~i~a~~~~~~d~~~iPtg 214 (344)
T 1snz_A 177 NHSYFNLAGQ--ASPNINDHEVTIEADTYLPVDETLIPTG 214 (344)
T ss_dssp ECCCBCTTCT--TCSCCTTCEEEECEEEECCBCTTSCBCS
T ss_pred ccceEecCCC--CCCcccCEEEEEECCeEEEeCCCCcccC
Confidence 9999999875 3447999999999999988875 56643
No 8
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=99.94 E-value=7.1e-28 Score=254.44 Aligned_cols=183 Identities=27% Similarity=0.447 Sum_probs=155.1
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHhC-----CccccccccCCCCCCCccchhhhhhhhcCCeEEECCeeEEeecC
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQG-----GLVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQN 162 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~g-----~~~~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~~n 162 (363)
.+.|+.+.-+++.|.. .|+.+.++...| ++...+.|+..+++|+|++++|++|||++|+|.++|++|+|++|
T Consensus 375 ~~~l~n~~~~~~~i~~---~Ga~l~s~~~~g~~~v~~~~~~~~y~~~~~~~~g~~l~~~~nRi~~g~f~~~G~~y~l~~n 451 (699)
T 1z45_A 375 FVTIGAGTRFQATFAN---LGASIVDLKVNGQSVVLGYENEEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVN 451 (699)
T ss_dssp EEEESTTSSEEEEEES---BTTCEEEEEETTEECBCCCSSHHHHTCTTCCCTTCEECSBCSEEGGGEEEETTEEEECCCC
T ss_pred EEEEECCCceEEEEEc---cCeEEEEEeecCceEEECCCCHHHHhhcCCCccccccCcccCeecCcEEEECCEEEEccCC
Confidence 5677777334877765 888877765444 23355678755567999999999999999999999999999999
Q ss_pred CCCCccCCCCcCccccceEee---e-eCC--eEEEEEeCCCCCCCCCceEEEEEEEEEc-cCCeEEEEEEEEe--CCCee
Q psy11897 163 VDVNHLHGGFKGFDKVIWSTY---V-DKD--KVVMSHMSPDGDEGYPGAVIATTTFQLT-SDNRLFITMEAVS--TKPTP 233 (363)
Q Consensus 163 ~~~~~lHG~~~g~~~~~w~~~---~-~~~--~vt~~~~~~~~~~g~P~~~~~~v~y~L~-~~~~l~i~~~~~~--~~~~p 233 (363)
+++|+||||..||+++.|++. . .++ +++|++.++++++||||++.++++|+|+ ++++|+|++++++ +++||
T Consensus 452 ~~~~~lHG~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~gyP~~~~~~v~y~L~~~~~~L~i~~~~~n~~~~~~p 531 (699)
T 1z45_A 452 NGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATP 531 (699)
T ss_dssp BTTBEETTGGGCGGGSBCEEEEEEEEETTEEEEEEEEEECGGGSSSSSEEEEEEEEEEETTTTEEEEEEEEEEEESSEEE
T ss_pred CCCcccCCCccccceeecceeeeccCCCCcceEEEEEECCCcCCCCCceEEEEEEEEEecCCCEEEEEEEEEecCCCCce
Confidence 999999999999999999952 2 255 7999999988899999999999999998 6899999999875 79999
Q ss_pred eccccccccccCCCCcccccccceEEEEeecceeeecc-CCCC
Q psy11897 234 INLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPR 275 (363)
Q Consensus 234 ~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPr 275 (363)
+|+|+||||||+|. .+.++.+|.|+++++.++.+++ ..|.
T Consensus 532 ~~~~~H~yFnl~~~--~~~~~~~~~l~~~a~~~~~~d~~~ipt 572 (699)
T 1z45_A 532 INLTNHSYFNLNKP--YGDTIEGTEIMVRSKKSVDVDKNMIPT 572 (699)
T ss_dssp CBCEECCEECTTTT--SCSSSTTEEEEESCCEEEEECTTSCEE
T ss_pred ecccccceEeecCC--CCCCccccEEEEecCeEEecCCCCCCC
Confidence 99999999999875 3457999999999999998885 5664
No 9
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.2e-27 Score=230.12 Aligned_cols=183 Identities=24% Similarity=0.367 Sum_probs=151.0
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHhC-----CccccccccCCCCCCCccchhhhhhhhcCCeEEECCeeEEeecC
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQG-----GLVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQN 162 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~g-----~~~~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~~n 162 (363)
.+.|..+.-+++.|.. .|+.+.++...| ++.+.+.| ..++.++|++++|++|||++|+|.++|++|+|++|
T Consensus 12 ~~~l~n~~~~~~~i~~---~GA~l~s~~~~g~~vl~~~~~~~~y-~~~~~~~G~~l~p~~nRi~~g~f~~~G~~y~l~~n 87 (342)
T 1yga_A 12 VITIGDEKKFQATIAP---LGATLVDLKVNGQSVVQGYSNVQDY-LTDGNMMGATVGRYANRIAKGVFSLDDGPHKLTVN 87 (342)
T ss_dssp CEEEEETTTEEEEEET---BTTEEEEEEETTEECBCCCSSGGGG-TTCSSCTTCEECSBCSEEGGGEEEETTEEEECCCC
T ss_pred EEEEECCCCEEEEEEC---CCCEEEEEEECCeeEEecCCChHHh-ccCCCeEccEECCCCCceeCCEEEECCEEEEcCCC
Confidence 6777766434778777 777777665433 22333445 34567999999999999999999999999999999
Q ss_pred CCCCccCCCCcCccccceEeee------eCCeEEEEEeCCCCCCC---CCceEEEEEEEEEcc-CCeEEEEEEEE--eCC
Q psy11897 163 VDVNHLHGGFKGFDKVIWSTYV------DKDKVVMSHMSPDGDEG---YPGAVIATTTFQLTS-DNRLFITMEAV--STK 230 (363)
Q Consensus 163 ~~~~~lHG~~~g~~~~~w~~~~------~~~~vt~~~~~~~~~~g---~P~~~~~~v~y~L~~-~~~l~i~~~~~--~~~ 230 (363)
+++|++|||..||+.+.|++.. .+++|+|++.+++++++ |||+|.++++|+|++ +++|+|+++++ +++
T Consensus 88 ~~~~~lHG~~~g~~~~~W~v~~~~~~~~~~~~v~l~l~~~~~~~g~~~yP~~~~~~vty~L~~~~~~L~i~~~~~N~~d~ 167 (342)
T 1yga_A 88 NCGNTNHSSISSLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTLNVAEMTLDMEYQAQLVRGD 167 (342)
T ss_dssp BTTBEETTGGGCGGGSBCEECCCEEEETTEEEEEEEEEECSSSSSCCCSSSEEEEEEEEEEETTTTEEEEEEEEEEEESS
T ss_pred CCCcccCCCccccCcceeeeEEeeccCCCCCEEEEEEECCcccCCCcCCCeEEEEEEEEEEeCCCCEEEEEEEEEeCCCC
Confidence 9999999999999999999643 34579999999888889 999999999999985 68999999987 799
Q ss_pred CeeeccccccccccCCCCcccccccceEEEEeecceeeecc-C-CCC
Q psy11897 231 PTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-G-YPR 275 (363)
Q Consensus 231 ~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-G-fPr 275 (363)
++|+++|+||||||+|.. ...++.+|.|++++..++.+++ . .|.
T Consensus 168 ~~p~~~~~H~YFnl~~~~-~~~~i~~~~l~l~a~~~~~~d~~~~iPt 213 (342)
T 1yga_A 168 ATPINMTNHSYFNLNKVK-SEKSIRGTEVKVCSNKSLEVTEGALLPT 213 (342)
T ss_dssp EEECBCEECCCBCTTTTT-CTTCCTTEEEEESCCEEEEECTTTCCEE
T ss_pred ceEEeeeccceEEcCCCC-CCCcccceEEEEeCCeEEEECCCCCCcC
Confidence 999999999999998752 1346899999999998888775 3 664
No 10
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.93 E-value=1.1e-25 Score=209.06 Aligned_cols=176 Identities=30% Similarity=0.487 Sum_probs=146.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchh
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVG 139 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~ 139 (363)
.+++|+|+|+|||||||+|++|+++++ +.++++++++|..+..++..|..+..++..|.+++++.. ..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g-~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~-----------~~ 95 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC-YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMV-----------LS 95 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHH-----------HH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC-CeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHH-----------HH
Confidence 356899999999999999999999997 999999999999999999999999999998888777653 22
Q ss_pred hhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCe
Q psy11897 140 RVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNR 219 (363)
Q Consensus 140 ~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~ 219 (363)
.+..++...
T Consensus 96 ~~~~~l~~~----------------------------------------------------------------------- 104 (243)
T 3tlx_A 96 LVDEKLKTP----------------------------------------------------------------------- 104 (243)
T ss_dssp HHHHHTTSG-----------------------------------------------------------------------
T ss_pred HHHHHHhcc-----------------------------------------------------------------------
Confidence 233333320
Q ss_pred EEEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEE
Q psy11897 220 LFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILY 295 (363)
Q Consensus 220 l~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~ 295 (363)
.....+++||||++..|++.|.+. ...+|.+|+
T Consensus 105 -------------------------------------------~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~ 141 (243)
T 3tlx_A 105 -------------------------------------------QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFY 141 (243)
T ss_dssp -------------------------------------------GGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred -------------------------------------------cccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEE
Confidence 012358899999999999987653 356999999
Q ss_pred EeCCHHHHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--c
Q psy11897 296 LDAPDDVILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSH--I 346 (363)
Q Consensus 296 L~~~de~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~ 346 (363)
|++|++++++||.+|+.+ .+|.||+++.+++||..|++++.|+++||.++ +
T Consensus 142 l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~ 221 (243)
T 3tlx_A 142 FNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLL 221 (243)
T ss_dssp EECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCE
T ss_pred EeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcE
Confidence 999999999999999631 25788999999999999999999999999975 7
Q ss_pred eeecCcccccccccC
Q psy11897 347 AKVNFLHKRRESVKS 361 (363)
Q Consensus 347 ~~v~~~~~~~~~~~~ 361 (363)
+.||++.+.+++.++
T Consensus 222 ~~id~~~~~~~v~~~ 236 (243)
T 3tlx_A 222 INLDATQPANDLEKK 236 (243)
T ss_dssp EEEETTSCHHHHHHH
T ss_pred EEEECCCCHHHHHHH
Confidence 889999998887643
No 11
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.90 E-value=4.3e-24 Score=193.35 Aligned_cols=174 Identities=29% Similarity=0.493 Sum_probs=141.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
|+|+|+|+|||||||+|+.|+++++ +.+++++++++..+..++..|..+..++..|.+++++.. ...+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~ 68 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYG-IPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT-----------IGIV 68 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS-CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHH-----------HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH-----------HHHH
Confidence 4799999999999999999999997 999999999999999888999999998877776665442 1112
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..++...
T Consensus 69 ~~~l~~~------------------------------------------------------------------------- 75 (216)
T 3dl0_A 69 KERLGKD------------------------------------------------------------------------- 75 (216)
T ss_dssp HHHHTSG-------------------------------------------------------------------------
T ss_pred HHHHhcc-------------------------------------------------------------------------
Confidence 2233210
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~L~ 297 (363)
.....+++||||++..|++.|.+. ...+|++|+|+
T Consensus 76 -----------------------------------------~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~ 114 (216)
T 3dl0_A 76 -----------------------------------------DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQ 114 (216)
T ss_dssp -----------------------------------------GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEE
T ss_pred -----------------------------------------cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEE
Confidence 012348899999999999888764 34689999999
Q ss_pred CCHHHHHHHHhhcC---------------------------CCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--cee
Q psy11897 298 APDDVILARLVKRG---------------------------LTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAK 348 (363)
Q Consensus 298 ~~de~l~~Rl~~R~---------------------------~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~ 348 (363)
+|++++.+|+.+|+ ...+|.||+++.+++|++.|++++.++.+||.++ ++.
T Consensus 115 ~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~ 194 (216)
T 3dl0_A 115 VDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVN 194 (216)
T ss_dssp CCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 99999999999992 2236789999999999999999999999999975 788
Q ss_pred ecCcccccccccC
Q psy11897 349 VNFLHKRRESVKS 361 (363)
Q Consensus 349 v~~~~~~~~~~~~ 361 (363)
||++.+.+++.++
T Consensus 195 id~~~~~~~v~~~ 207 (216)
T 3dl0_A 195 VNGQQDIQDVYAD 207 (216)
T ss_dssp EECSSCHHHHHHH
T ss_pred EECCCCHHHHHHH
Confidence 9999998877643
No 12
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.90 E-value=1.6e-23 Score=189.35 Aligned_cols=173 Identities=31% Similarity=0.501 Sum_probs=141.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
|+|+|+|+|||||||+|+.|+++++ +.+++++++++..+..++..|..+..++..|.+++++.. ...+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~ 68 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYE-IPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVT-----------IGIV 68 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC-CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHH-----------HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH-----------HHHH
Confidence 4799999999999999999999997 999999999999999888999999999888877665442 1122
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..++...
T Consensus 69 ~~~l~~~------------------------------------------------------------------------- 75 (216)
T 3fb4_A 69 HERLSKD------------------------------------------------------------------------- 75 (216)
T ss_dssp HHHHTSG-------------------------------------------------------------------------
T ss_pred HHHHhcc-------------------------------------------------------------------------
Confidence 2233210
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~L~ 297 (363)
.....+++||||++..|++.|.+. ...+|.+|+|+
T Consensus 76 -----------------------------------------~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~ 114 (216)
T 3fb4_A 76 -----------------------------------------DCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIK 114 (216)
T ss_dssp -----------------------------------------GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEE
T ss_pred -----------------------------------------cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 012248899999999999888764 34589999999
Q ss_pred CCHHHHHHHHhhcC---------------------------CCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--cee
Q psy11897 298 APDDVILARLVKRG---------------------------LTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAK 348 (363)
Q Consensus 298 ~~de~l~~Rl~~R~---------------------------~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~ 348 (363)
+|++++.+|+.+|+ ...+|.+|+++.+++|++.|++++.++.+||.+. ++.
T Consensus 115 ~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~ 194 (216)
T 3fb4_A 115 VEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKD 194 (216)
T ss_dssp CCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEE
Confidence 99999999999992 2235778999999999999999999999999985 788
Q ss_pred ecCccccccccc
Q psy11897 349 VNFLHKRRESVK 360 (363)
Q Consensus 349 v~~~~~~~~~~~ 360 (363)
||++.+.+++.+
T Consensus 195 id~~~~~~~v~~ 206 (216)
T 3fb4_A 195 IDGQQDIKKVFV 206 (216)
T ss_dssp EECSSCHHHHHH
T ss_pred EECCCCHHHHHH
Confidence 999998887754
No 13
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.90 E-value=1.5e-23 Score=189.94 Aligned_cols=174 Identities=34% Similarity=0.533 Sum_probs=141.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
|+|+|+|+|||||||+++.|+++++ +.++++++++++.+..++..|..+++++..|..++++.+. ..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g-~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-----------~~i 68 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYG-IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI-----------ALV 68 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC-CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHH-----------HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHH-----------HHH
Confidence 4699999999999999999999997 9999999999998888889999999998887765544321 112
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..++...
T Consensus 69 ~~~l~~~------------------------------------------------------------------------- 75 (214)
T 1e4v_A 69 KERIAQE------------------------------------------------------------------------- 75 (214)
T ss_dssp HHHHTSG-------------------------------------------------------------------------
T ss_pred HHHHhcc-------------------------------------------------------------------------
Confidence 2222210
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHH
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDD 301 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de 301 (363)
....++++||||++..|++.|......||++|+|++|.+
T Consensus 76 -----------------------------------------~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e 114 (214)
T 1e4v_A 76 -----------------------------------------DCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDE 114 (214)
T ss_dssp -----------------------------------------GGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHH
T ss_pred -----------------------------------------ccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHH
Confidence 011247889999999999988876667999999999999
Q ss_pred HHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhh-------cce
Q psy11897 302 VILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKS-------HIA 347 (363)
Q Consensus 302 ~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~-------~~~ 347 (363)
++.+|+.+|... .+|.||+.+.+++|++.|++.+.+++++|.+ .++
T Consensus 115 ~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~ 194 (214)
T 1e4v_A 115 LIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYA 194 (214)
T ss_dssp HHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEE
Confidence 999999988521 2578899999999999999999999999984 588
Q ss_pred eecCcccccccccC
Q psy11897 348 KVNFLHKRRESVKS 361 (363)
Q Consensus 348 ~v~~~~~~~~~~~~ 361 (363)
.|||..+.+++.++
T Consensus 195 ~ida~~~~~~v~~~ 208 (214)
T 1e4v_A 195 KVDGTKPVAEVRAD 208 (214)
T ss_dssp EEETTSCHHHHHHH
T ss_pred EEECCCCHHHHHHH
Confidence 99999988887643
No 14
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum}
Probab=99.89 E-value=9.3e-24 Score=205.72 Aligned_cols=177 Identities=19% Similarity=0.257 Sum_probs=141.1
Q ss_pred ceEEecCccchhhhh-ccCcchhHHHHHHHhC-C--cc--cc-----ccccCCCCCCCccchhhhhhhhcCCeEEECCee
Q psy11897 88 AIHISTGDLLRAEVR-TGNTRGRNIEAIMKQG-G--LV--PD-----VSYLSSNNPYFGSTVGRVANRIAGGKFTIDKEN 156 (363)
Q Consensus 88 ~~~is~gdllr~~i~-~~~~~G~~l~~~~~~g-~--~~--~~-----~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~ 156 (363)
.+.|+.+.+ ++.|. . .|+.+.++...+ + ++ .+ +.|+ .++.++|+++++++|||++|+|.++|++
T Consensus 20 ~~~L~n~~~-~~~i~p~---~Ga~l~s~~~~~~g~~~l~~~~~~~~~~~y~-~~~~~~G~pv~~p~nRi~~g~f~~~G~~ 94 (341)
T 3os7_A 20 CIRFAAGGY-EALIIPD---VGGNVVELKDTNKGVTILRTPKKDLKFEDFK-NRPQVYGLPVLFPPNRIDDGTFKLGDKT 94 (341)
T ss_dssp EEEEEETTE-EEEEETT---TTTEEEEEEETTTTEECBCCCCTTCCHHHHH-HSGGGSSCCEESSCSEEETTEEEETTEE
T ss_pred EEEEeCCCE-EEEEchh---cCCEEEEEEeCCCCCeEEEcCCcccchhhhh-hCCcccceeEeCCCCcccCCEEEECCEE
Confidence 577887764 88876 5 777776654322 1 11 11 3554 4678899999999999999999999999
Q ss_pred EEeecCC--CCCccCCCCcCccccceEeee-e--CC--eEEEEEeCCCCCC---CCCceEEEEEEEEEccCCeEEEEEEE
Q psy11897 157 FTISQNV--DVNHLHGGFKGFDKVIWSTYV-D--KD--KVVMSHMSPDGDE---GYPGAVIATTTFQLTSDNRLFITMEA 226 (363)
Q Consensus 157 y~L~~n~--~~~~lHG~~~g~~~~~w~~~~-~--~~--~vt~~~~~~~~~~---g~P~~~~~~v~y~L~~~~~l~i~~~~ 226 (363)
|+|++|+ ++|++||+ +..+.|++.. . ++ +|+|++.++++++ +|||+|.++++|+|++ +.|.+++++
T Consensus 95 y~l~~N~~~~~~~lHG~---~~~~~W~v~~~~~~~~~~~v~~~~~~~d~~~~~~g~P~~~~~~v~y~L~~-~~L~i~~~~ 170 (341)
T 3os7_A 95 YKFPINEAKNNNYIHGF---IKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSS-KGLKQTTSV 170 (341)
T ss_dssp EECCCSBTTTTEEESCS---GGGSCCEEEEEEEETTEEEEEEEEEECTTSTTTTTSCCCEEEEEEEEEET-TEEEEEEEE
T ss_pred EEccCCCCCCCcCccCC---cccCcEEEEEeecCCCccEEEEEEEeCCCcchhhcCCceEEEEEEEEEeC-CeEEEEEEE
Confidence 9999998 59999998 6688899643 2 22 6788888877765 9999999999999986 488888876
Q ss_pred --EeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeecc-CCCC
Q psy11897 227 --VSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPR 275 (363)
Q Consensus 227 --~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPr 275 (363)
++++++|+++|+|||||++|+ .+.++.+|.|++++..++.+++ ..|.
T Consensus 171 ~N~~~~~~p~~~~~H~yF~l~~~--~~~~~~~~~l~~~a~~~~~~d~~~iPt 220 (341)
T 3os7_A 171 VNLSSEEMPLSVGYHSAFNVPFI--EGSEDSNCRVKISIDKFWKQDSRNLPT 220 (341)
T ss_dssp EECSSSCEEECCEECCEEESSCB--TTCCGGGEEEEECEEEEEEECTTSCEE
T ss_pred EeCCCCcEEEEEecCceeecCCC--CCCCcccEEEEEeCCcEEecCcccCCC
Confidence 578999999999999999886 4557899999999999888874 5664
No 15
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.89 E-value=5.6e-23 Score=186.93 Aligned_cols=175 Identities=27% Similarity=0.445 Sum_probs=137.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
+++|+|+|+|||||||+++.|+++++ +.+++++++++..+..++..|..+.+++..|..++++.. ..-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~-----------~~~ 72 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG-LAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIV-----------LGL 72 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHH-----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC-ceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHH-----------HHH
Confidence 46799999999999999999999997 999999999998888888899999999887765544332 111
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+..++..
T Consensus 73 i~~~l~~------------------------------------------------------------------------- 79 (217)
T 3be4_A 73 VKEKFDL------------------------------------------------------------------------- 79 (217)
T ss_dssp HHHHHHT-------------------------------------------------------------------------
T ss_pred HHHHHhc-------------------------------------------------------------------------
Confidence 1122211
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHh----cCCCCCEEEEE
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVK----DTKEPAIILYL 296 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~----~~~~~d~vi~L 296 (363)
.+...++|+||||++.+|++.|.+ ....||++|+|
T Consensus 80 -----------------------------------------~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L 118 (217)
T 3be4_A 80 -----------------------------------------GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYF 118 (217)
T ss_dssp -----------------------------------------TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred -----------------------------------------cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 001224888999999999988763 34579999999
Q ss_pred eCCHHHHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhh--cce
Q psy11897 297 DAPDDVILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKS--HIA 347 (363)
Q Consensus 297 ~~~de~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~--~~~ 347 (363)
++|++++.+|+.+|... ..|.||+.+.+++|+..|.+.+.|++++|.+ .++
T Consensus 119 ~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~ 198 (217)
T 3be4_A 119 EIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILK 198 (217)
T ss_dssp ECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEE
T ss_pred ECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999988521 1356788999999999999999999999985 378
Q ss_pred eecCcccccccccC
Q psy11897 348 KVNFLHKRRESVKS 361 (363)
Q Consensus 348 ~v~~~~~~~~~~~~ 361 (363)
.||+..+.++++++
T Consensus 199 ~id~~~~~~~v~~~ 212 (217)
T 3be4_A 199 RVNAKLPPKEVTEQ 212 (217)
T ss_dssp EEETTSCHHHHHHH
T ss_pred EEECCCCHHHHHHH
Confidence 89999988887653
No 16
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.88 E-value=1.1e-22 Score=186.94 Aligned_cols=176 Identities=26% Similarity=0.443 Sum_probs=139.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchh
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVG 139 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~ 139 (363)
.++.|+|+|+|||||||+++.|+++++ +.++++++++++.+..++..|..++.++..|..++++.. ..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~-----------~~ 82 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC-VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV-----------LE 82 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHH-----------HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHH-----------HH
Confidence 345799999999999999999999997 999999999999888888899999999887766555432 11
Q ss_pred hhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCe
Q psy11897 140 RVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNR 219 (363)
Q Consensus 140 ~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~ 219 (363)
-+..++...
T Consensus 83 ~i~~~l~~~----------------------------------------------------------------------- 91 (233)
T 1ak2_A 83 LIEKNLETP----------------------------------------------------------------------- 91 (233)
T ss_dssp HHHHHHTSG-----------------------------------------------------------------------
T ss_pred HHHHHHhcc-----------------------------------------------------------------------
Confidence 122233210
Q ss_pred EEEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEE
Q psy11897 220 LFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILY 295 (363)
Q Consensus 220 l~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~ 295 (363)
....++++||||++..|++.|.+. ...+|++|+
T Consensus 92 -------------------------------------------~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~ 128 (233)
T 1ak2_A 92 -------------------------------------------PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIE 128 (233)
T ss_dssp -------------------------------------------GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred -------------------------------------------cccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 011248889999999999876543 346999999
Q ss_pred EeCCHHHHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--c
Q psy11897 296 LDAPDDVILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSH--I 346 (363)
Q Consensus 296 L~~~de~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~ 346 (363)
|++|++++.+|+.+|... ..|.||+.+.+++|+..|.+...|++++|.+. +
T Consensus 129 L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~ 208 (233)
T 1ak2_A 129 FSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIH 208 (233)
T ss_dssp EECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 999999999999988521 13678889999999999999999999999853 7
Q ss_pred eeecCcccccccccC
Q psy11897 347 AKVNFLHKRRESVKS 361 (363)
Q Consensus 347 ~~v~~~~~~~~~~~~ 361 (363)
+.||+..+.++++++
T Consensus 209 ~~id~~~~~~~v~~~ 223 (233)
T 1ak2_A 209 SAIDASQTPDVVFAS 223 (233)
T ss_dssp EEEETTSCHHHHHHH
T ss_pred EEEECCCCHHHHHHH
Confidence 889999888877643
No 17
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.88 E-value=2e-22 Score=183.13 Aligned_cols=175 Identities=32% Similarity=0.497 Sum_probs=138.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
++.|+|+|+|||||||+++.|+++++ +.+++++++++..+..++..|..+++++..|...+.+.. ...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~-----------~~~ 71 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH-AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM-----------VNM 71 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHH-----------HHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-ceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHH-----------HHH
Confidence 46899999999999999999999997 999999999998888888899999999887766554432 111
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+..++...
T Consensus 72 l~~~l~~~------------------------------------------------------------------------ 79 (220)
T 1aky_A 72 IKDELTNN------------------------------------------------------------------------ 79 (220)
T ss_dssp HHHHHHHC------------------------------------------------------------------------
T ss_pred HHHHHHhc------------------------------------------------------------------------
Confidence 22333200
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEEE
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILYL 296 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~L 296 (363)
.+...++|+||||++.+|++.|.+. ...||++|+|
T Consensus 80 -----------------------------------------~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L 118 (220)
T 1aky_A 80 -----------------------------------------PACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIEL 118 (220)
T ss_dssp -----------------------------------------GGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred -----------------------------------------cccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 0012247889999999998876543 3579999999
Q ss_pred eCCHHHHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhh--cce
Q psy11897 297 DAPDDVILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKS--HIA 347 (363)
Q Consensus 297 ~~~de~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~--~~~ 347 (363)
++|.+++.+|+.+|... ..|.||+.+.+++|++.|.+...|++++|.+ .++
T Consensus 119 ~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~ 198 (220)
T 1aky_A 119 KVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWA 198 (220)
T ss_dssp ECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEE
T ss_pred ECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999988521 1367888999999999999999999999975 478
Q ss_pred eecCccccccccc
Q psy11897 348 KVNFLHKRRESVK 360 (363)
Q Consensus 348 ~v~~~~~~~~~~~ 360 (363)
.||+..+.+++++
T Consensus 199 ~id~~~~~~~v~~ 211 (220)
T 1aky_A 199 GVDASQPPATVWA 211 (220)
T ss_dssp EEETTSCHHHHHH
T ss_pred EEECCCCHHHHHH
Confidence 8999988887764
No 18
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.86 E-value=1.7e-22 Score=184.68 Aligned_cols=173 Identities=23% Similarity=0.378 Sum_probs=135.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
|.|+|+|+|||||||+++.|+++++ +.+++++++++..+..++..|..+++++..|.+++.+.. ...+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg-~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~-----------~~~i 68 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYS-LAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDIT-----------IPMV 68 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHH-----------HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHH-----------HHHH
Confidence 3689999999999999999999997 999999999998887777889999888877765544321 1111
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
..++..
T Consensus 69 ~~~l~~-------------------------------------------------------------------------- 74 (223)
T 2xb4_A 69 LETLES-------------------------------------------------------------------------- 74 (223)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHhc--------------------------------------------------------------------------
Confidence 111111
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEEEe
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILYLD 297 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~L~ 297 (363)
.. ..++|+||||++..|++.|.+. ...||++|+|+
T Consensus 75 ----------------------------------------~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~ 113 (223)
T 2xb4_A 75 ----------------------------------------KG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEIL 113 (223)
T ss_dssp ----------------------------------------HC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred ----------------------------------------cc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 00 1248889999999999888643 35799999999
Q ss_pred CCHHHHHHHHhhcCCC-----------------------------CCCCCCcHH-HHHHHHHHHHHHhhHHHH---Hhhh
Q psy11897 298 APDDVILARLVKRGLT-----------------------------SGRPDDKED-AIKKRLIKANENDGPILQ---AFKS 344 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~~-----------------------------~~r~dd~~e-~i~~Rl~~~~~~~~~i~~---~~~~ 344 (363)
+|++++.+|+.+|... ..|.||+.+ .+++||..|++.+.|+.+ +|.+
T Consensus 114 ~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~ 193 (223)
T 2xb4_A 114 LPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKN 193 (223)
T ss_dssp CCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHT
T ss_pred CCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhh
Confidence 9999999999998631 135667788 999999999999999999 9986
Q ss_pred -------cceeecCcccccccccC
Q psy11897 345 -------HIAKVNFLHKRRESVKS 361 (363)
Q Consensus 345 -------~~~~v~~~~~~~~~~~~ 361 (363)
.++.||+..+.+++.++
T Consensus 194 ~a~~~~~~~~~ida~~~~~~v~~~ 217 (223)
T 2xb4_A 194 MAAKEGFVYIELDGEGSIDSIKDT 217 (223)
T ss_dssp THHHHTCEEEEEETTSCHHHHHHH
T ss_pred hhhccCCeEEEEECCCCHHHHHHH
Confidence 27889999988887653
No 19
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Probab=99.86 E-value=1.3e-22 Score=196.34 Aligned_cols=172 Identities=19% Similarity=0.286 Sum_probs=135.9
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHhC-C--cc----ccccccCCCCCCCccchhhhhhhhcCCeEEECCeeEEee
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQG-G--LV----PDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTIS 160 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~g-~--~~----~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~ 160 (363)
.+.|+.+.+ ++.|.+ ..|+.+.++...+ + ++ ..+.| ..++.++|+++++++|||++|+|.++|++|+|+
T Consensus 16 ~~~L~n~~~-~~~i~p--~~GA~l~s~~~~~~g~~~l~~~~~~~~~-~~~~~~~G~pv~~p~nRi~~g~~~~~G~~y~l~ 91 (326)
T 3mwx_A 16 AIKAGNEHL-EMIVVP--EWGSNVISLVDKTTNVQLLREPETAESF-HDTPTLYGIPILFPPNRISDGTFSFRGRTYHFD 91 (326)
T ss_dssp EEEEEESSE-EEEEET--TTTTEEEEEEETTTTEECBCCCSSHHHH-HHCTTSSSCCEEBSCSEEETTEEEETTEEEECC
T ss_pred EEEEECCCE-EEEEch--hcCCEEEEEEecCCCceEEccCcChhHh-hcCccccCceEcCCCCcccCCEEEECCEEEEcc
Confidence 577888875 888872 2777777654322 1 11 11222 236788999999999999999999999999999
Q ss_pred cCC--CCCccCCCCcCccccceEeee-e--C--CeEEEEEeCCCCCC---CCCceEEEEEEEEEccCCeEEEEEEE--Ee
Q psy11897 161 QNV--DVNHLHGGFKGFDKVIWSTYV-D--K--DKVVMSHMSPDGDE---GYPGAVIATTTFQLTSDNRLFITMEA--VS 228 (363)
Q Consensus 161 ~n~--~~~~lHG~~~g~~~~~w~~~~-~--~--~~vt~~~~~~~~~~---g~P~~~~~~v~y~L~~~~~l~i~~~~--~~ 228 (363)
+|+ ++|++||+ +..+.|++.. . + .+|+|++.++++++ +|||+|.++++|+|++ +.|.+++++ .+
T Consensus 92 ~N~~~~~~~lHG~---~~~~~W~v~~~~~~~~~~~v~~~~~~~~~~~~~~g~P~~~~~~v~y~L~~-~~L~i~~~~~N~~ 167 (326)
T 3mwx_A 92 INEKDKHNHLHGF---LYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQKQFPHHAVVRMTYTIKE-NTLFKHATVMNKG 167 (326)
T ss_dssp CCBTTTTEEESBS---CTTSCCEEEEEEEESSCEEEEEEEEGGGCHHHHHHSCSCEEEEEEEEEET-TEEEEEEEEEECS
T ss_pred CCCCCCCccccCC---ccCCceEEEEeeccCCceEEEEEEEeCCCCccccCCCceEEEEEEEEEcC-CcEEEEEEEEECC
Confidence 998 79999998 5678899643 2 1 37899999877764 9999999999999986 688888887 46
Q ss_pred CCCeeeccccccccccCCCCcccccccceEEEEeecceeeecc-CCCC
Q psy11897 229 TKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPR 275 (363)
Q Consensus 229 ~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPr 275 (363)
++++|+++|+|||||++ +.+|.|++++..++.+++ ..|.
T Consensus 168 ~~~~~~~~~~H~yFnl~--------~~~~~l~~~a~~~~~~d~~~ipt 207 (326)
T 3mwx_A 168 KEAFPWGIGYHTTFIFP--------AESSLFSLTADQQWELDERLLPT 207 (326)
T ss_dssp SSCEEECCEECCCEECC--------TTTEEEEESEEEEEEECTTSCEE
T ss_pred CCceeeEEeeccccCCC--------CCCEEEEEECCcEEEeCCccCCC
Confidence 89999999999999984 679999999999888875 5664
No 20
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.86 E-value=1.8e-21 Score=177.16 Aligned_cols=176 Identities=33% Similarity=0.503 Sum_probs=139.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchh
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVG 139 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~ 139 (363)
.|+.|+|+|+|||||||+++.|+++++ +.+++++++++..+..++..|..+.+++..|.+++++.+. .
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~-----------~ 71 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ-LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVV-----------N 71 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC-CEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHH-----------H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHH-----------H
Confidence 346799999999999999999999997 9999999998888888788999999988877766555431 1
Q ss_pred hhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCe
Q psy11897 140 RVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNR 219 (363)
Q Consensus 140 ~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~ 219 (363)
.+.+++...
T Consensus 72 ~~~~~~~~~----------------------------------------------------------------------- 80 (222)
T 1zak_A 72 MVKERLRQP----------------------------------------------------------------------- 80 (222)
T ss_dssp HHHHHHHSH-----------------------------------------------------------------------
T ss_pred HHHHHHhhc-----------------------------------------------------------------------
Confidence 122333210
Q ss_pred EEEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCC
Q psy11897 220 LFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAP 299 (363)
Q Consensus 220 l~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~ 299 (363)
.+....+|+||||++.+|++.|.+....||++|+|++|
T Consensus 81 ------------------------------------------~~~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~ 118 (222)
T 1zak_A 81 ------------------------------------------DAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVP 118 (222)
T ss_dssp ------------------------------------------HHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECC
T ss_pred ------------------------------------------cccCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECC
Confidence 00112366799999999999988766678999999999
Q ss_pred HHHHHHHHhhcCCC-----------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCccccc
Q psy11897 300 DDVILARLVKRGLT-----------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRR 356 (363)
Q Consensus 300 de~l~~Rl~~R~~~-----------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 356 (363)
.+++.+|+..|... ..|.+|..+.+++|++.|..+..++.++|.+.++.||++.+.+
T Consensus 119 ~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ 198 (222)
T 1zak_A 119 DELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVD 198 (222)
T ss_dssp HHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHH
T ss_pred HHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHH
Confidence 99999999887521 2345778899999999999999999999987788999988887
Q ss_pred cccc
Q psy11897 357 ESVK 360 (363)
Q Consensus 357 ~~~~ 360 (363)
++++
T Consensus 199 ev~~ 202 (222)
T 1zak_A 199 AVFA 202 (222)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 21
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei}
Probab=99.86 E-value=2.5e-22 Score=191.86 Aligned_cols=168 Identities=13% Similarity=0.205 Sum_probs=132.8
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHh-CCccccccccCCCCCC---CccchhhhhhhhcCCeEEECCeeEEeecCC
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQ-GGLVPDVSYLSSNNPY---FGSTVGRVANRIAGGKFTIDKENFTISQNV 163 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~-g~~~~~~~y~~~~~~~---~G~~l~~~~nRI~~g~~~~~G~~y~L~~n~ 163 (363)
++.|+++.+ ++.|.. .|+.+.++... ++ .+..|...+.+ .|++++|++|||++|+|.++|++|+|+
T Consensus 2 ~~~l~n~~~-~~~i~~---~Ga~l~s~~~~~~g---~e~l~~~~~~~~~~~~p~l~P~~~Ri~~g~~~~~G~~y~l~--- 71 (294)
T 3q1n_A 2 MITIENSKF-KAGIAE---RGAELQSLVNKADN---YEYVWTGDKTFWNRHAPILFPSIGKSNQDQYRLGAKTYPMS--- 71 (294)
T ss_dssp EEEEECSSE-EEEEET---BTTEEEEEEETTTT---EECBCCCCTTTCSCSCCEEBSCCSCCGGGEEEETTEEEECC---
T ss_pred EEEEECCCE-EEEEEc---cCcEEEEEEeCCCC---CEEEEcCChhhccCCCCEEEeccCCcCCCEEEECCcEEccC---
Confidence 677888764 888876 78887776532 12 12222222222 268999999999999999999999997
Q ss_pred CCCccCCCCcCccccceEee-eeCCeEEEEEeCCCC-CCCCCceEEEEEEEEEccCCeEEEEEEEE--eCCCeeeccccc
Q psy11897 164 DVNHLHGGFKGFDKVIWSTY-VDKDKVVMSHMSPDG-DEGYPGAVIATTTFQLTSDNRLFITMEAV--STKPTPINLTNH 239 (363)
Q Consensus 164 ~~~~lHG~~~g~~~~~w~~~-~~~~~vt~~~~~~~~-~~g~P~~~~~~v~y~L~~~~~l~i~~~~~--~~~~~p~~l~~H 239 (363)
+||+.+ .+.|++. ..+++|+|++.++++ .++|||+|+++++|+|+ ++.|.++++++ +++++|+++|+|
T Consensus 72 ----~HGf~r---~~~w~~~~~~~~~v~l~l~~~~~~~~~yP~~~~~~v~y~L~-~~~L~i~~~~~N~~~~~~p~~~~~H 143 (294)
T 3q1n_A 72 ----QHGFAR---DYDFDVSDKSDSAVTFTQHQNAETLKKFPFEYTLAVTYMLT-DGGLSVHYTVTNDDSKSMPFALGFH 143 (294)
T ss_dssp ----TTBSGG---GSBCEEESCCSSEEEEEEECCHHHHHHSCCCEEEEEEEEEE-TTEEEEEEEEEECSSSCEEECEEEC
T ss_pred ----CCCCcc---CcceEEEEccCCEEEEEEEcCcchhhcCCeEEEEEEEEEEe-CCEEEEEEEEEcCCCCceeeeEecC
Confidence 466542 4679964 566899999999776 79999999999999997 47899999987 789999999999
Q ss_pred cccccCCCCcccccccceEEEEeecc----eeeec-cCCCC
Q psy11897 240 SYFNLAGHDIVREVLYKKMLQELAKA----KLFLI-DGYPR 275 (363)
Q Consensus 240 ~yFnl~g~~~~~~~i~~~~l~l~a~~----~~~i~-DGfPr 275 (363)
||||+++. .+.++.+|.|++++.. ++.++ +++|.
T Consensus 144 ~yFnl~~~--~~~~~~d~~l~~~a~~~~~~~~~~~~~~l~~ 182 (294)
T 3q1n_A 144 PAFNVGLK--ADGSFDDYDLTVEPLNSPLQRFGIGPVPFRN 182 (294)
T ss_dssp CEEECCBC--TTSSBCSCEEEEECCSSCCEEEEESSTTSEE
T ss_pred cEEEcCCC--CCCcccCEEEEEcCCcccceEEeeCCCCcCC
Confidence 99999876 4567999999999999 88886 45664
No 22
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}
Probab=99.85 E-value=2.5e-21 Score=184.64 Aligned_cols=166 Identities=19% Similarity=0.271 Sum_probs=130.9
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHhCC-cc--ccccccCCCCCCCccchhhhhhhhcCCeEEECCeeEEeecCCC
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQGG-LV--PDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVD 164 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~-~~--~~~~y~~~~~~~~G~~l~~~~nRI~~g~~~~~G~~y~L~~n~~ 164 (363)
++.|+.+.+ ++.|.+ ..|+.+.++ ..|. ++ .++. .....+.|++++|++|||++|+|.++|++|+|++|++
T Consensus 4 ~~~l~n~~~-~~~i~~--~~Ga~l~s~-~~g~~vl~~~~~~--~~~~~~~g~~l~p~~nRi~~g~~~~~G~~y~l~~N~~ 77 (291)
T 3nre_A 4 IYTLSHGSL-KLDVSD--QGGVIEGFW-RDTTPLLRPGKKS--GVATDASCFPLVPFANRVSGNRFVWQGREYQLQPNVE 77 (291)
T ss_dssp EEEEEETTE-EEEEET--BTTEEEEEE-ETTEESSCCCCCS--SCGGGSSEEEEBSCCSBCGGGEEEETTEEEECCCCST
T ss_pred EEEEcCCCE-EEEEEc--ccCceEEEE-eCCCEEEECCCcc--cCccccCCcEEEeeCCEecCCEEEECCEEEECCCCCC
Confidence 577877755 777776 126656555 3331 11 1111 1123577899999999999999999999999999996
Q ss_pred --CCccCCCCcCccccceEee-eeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEE--EeCCCeeeccccc
Q psy11897 165 --VNHLHGGFKGFDKVIWSTY-VDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEA--VSTKPTPINLTNH 239 (363)
Q Consensus 165 --~~~lHG~~~g~~~~~w~~~-~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~--~~~~~~p~~l~~H 239 (363)
+|++||+ ++ .+.|++. ..+++|+|++.++ + |||+|.++++|+|++ ++|.+++++ .+++++|+++|+|
T Consensus 78 ~~~~~~HG~--~~-~~~W~~~~~~~~~v~l~l~~~---~-~P~~~~~~v~y~L~~-~~L~i~~~~~N~~~~~~~~~~~~H 149 (291)
T 3nre_A 78 WDAHYLHGD--GW-LGEWQCVSHSDDSLCLVYEHR---S-GVYHYRVSQAFHLTA-DTLTVTLSVTNQGAETLPFGTGWH 149 (291)
T ss_dssp TCSSCBSBS--GG-GSBCEEEEECSSEEEEEEEEE---S-SSCEEEEEEEEEECS-SEEEEEEEEEECSSSCEEECCEEE
T ss_pred CCCCCCCCc--hh-cceeEEEEccCCEEEEEEeCC---C-CCceEEEEEEEEEeC-CeEEEEEEEEECCCCCccceEEcC
Confidence 8999999 56 7889964 5578999999874 5 999999999999985 789999988 4689999999999
Q ss_pred cccccCCCCcccccccceEEEEeecceeeecc-CCCCC
Q psy11897 240 SYFNLAGHDIVREVLYKKMLQELAKAKLFLID-GYPRD 276 (363)
Q Consensus 240 ~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~D-GfPrt 276 (363)
+||||++ ++.|++++..++.+++ +.|..
T Consensus 150 ~YFnl~~---------~~~l~i~a~~~~~~d~~~iPtg 178 (291)
T 3nre_A 150 PYFPLSP---------QTRIQAQASGYWLEREQWLAGE 178 (291)
T ss_dssp EEEECCT---------TCEEEECCSEEEEECGGGCEEE
T ss_pred ccEecCC---------CeEEEEECCEEEEcCCCcCCCc
Confidence 9999964 5899999999988875 56653
No 23
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Probab=99.85 E-value=7.1e-22 Score=189.86 Aligned_cols=159 Identities=14% Similarity=0.233 Sum_probs=131.2
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHh-CCccccccccCCCCCCCc---cchhhhhhhhcCCeEEECCeeEEeecCC
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQ-GGLVPDVSYLSSNNPYFG---STVGRVANRIAGGKFTIDKENFTISQNV 163 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~-g~~~~~~~y~~~~~~~~G---~~l~~~~nRI~~g~~~~~G~~y~L~~n~ 163 (363)
.+.|+++. +++.|.. .|+.+.++... ++ .+..|..++.++| ++++|++|||++|+|.++|++|+|+.
T Consensus 2 ~~~l~n~~-~~~~i~~---~GA~l~s~~~~~~~---~e~l~~~~~~~~~~~~pil~P~~nRi~~g~~~~~G~~y~l~~-- 72 (307)
T 3dcd_A 2 DYTIENNM-IKVVISD---HGAEIQSVKSAHTD---EEFMWQANPEIWGRHAPVLFPIVGRLKNDEYTYKGKTYHLGQ-- 72 (307)
T ss_dssp EEEEECSS-EEEEEET---BTTEEEEEEETTTC---CBCBCCCCTTTCCCSSCEEBSCSSCCGGGEEEETTEEEECCT--
T ss_pred EEEEECCC-EEEEEEc---cCcEEEEEEECCCC---cEEEECCChhhcCCCCcEEEeecCccCCCeEEECCEEEecCC--
Confidence 35677776 4888876 88888877532 23 2444555667777 89999999999999999999999984
Q ss_pred CCCccCCCCcCccc-cceEe-eeeCCeEEEEEeCC-CCCCCCCceEEEEEEEEEccCCeEEEEEEEEe--CCCeeecccc
Q psy11897 164 DVNHLHGGFKGFDK-VIWST-YVDKDKVVMSHMSP-DGDEGYPGAVIATTTFQLTSDNRLFITMEAVS--TKPTPINLTN 238 (363)
Q Consensus 164 ~~~~lHG~~~g~~~-~~w~~-~~~~~~vt~~~~~~-~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~--~~~~p~~l~~ 238 (363)
| ||.+ +.|++ ...+++|+|++.+. ++.++|||+|.++++|+|+ ++.|.+++++++ ++++|+++|+
T Consensus 73 -----H----Gf~r~~~w~v~~~~~~~v~l~l~~~~~~~~~yP~~~~~~v~y~L~-~~~L~i~~~v~N~g~~~~p~~~g~ 142 (307)
T 3dcd_A 73 -----H----GFARNADFEVENHTKESITFLLKDNEETRKVYPFKFEFRVNYNLM-NNLLEENFSVVNKSDETMIFGVGG 142 (307)
T ss_dssp -----T----BSGGGSBCEEEEEETTEEEEEEECCHHHHHHSCCCEEEEEEEEEE-TTEEEEEEEEEECSSSCEEECEEE
T ss_pred -----C----CCccCcEEEEEEecCCEEEEEEecCcchhhhCCCceEEEEEEEEe-CCEEEEEEEEECCCCCcEeEEEEc
Confidence 4 6665 67995 45678999999996 6789999999999999998 688999999875 8999999999
Q ss_pred ccccccCCCCcccccccceEEEEeeccee
Q psy11897 239 HSYFNLAGHDIVREVLYKKMLQELAKAKL 267 (363)
Q Consensus 239 H~yFnl~g~~~~~~~i~~~~l~l~a~~~~ 267 (363)
|||||+++. .+.++.+|.|++++...+
T Consensus 143 HpyF~~~~~--~~~~~~d~~L~~~a~~~~ 169 (307)
T 3dcd_A 143 HPGFNLPTD--HGENKEDFYFDMHPSVTR 169 (307)
T ss_dssp CCEEECCCT--TSCCGGGEEEEEESCCCE
T ss_pred CcEEEcCCC--CCCccccEEEEEcCCCce
Confidence 999999876 456789999999998754
No 24
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.84 E-value=9.9e-21 Score=169.44 Aligned_cols=171 Identities=29% Similarity=0.490 Sum_probs=134.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchh
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVG 139 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~ 139 (363)
.++.|+|+|+|||||||+|+.|+++++ +.+++++++++..+..++..|..+.+++..|...+.+.. ..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~-~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~-----------~~ 86 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG-IPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT-----------NE 86 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT-CCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHH-----------HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHH-----------HH
Confidence 456799999999999999999999997 999999999888787777889999888877765443331 11
Q ss_pred hhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCe
Q psy11897 140 RVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNR 219 (363)
Q Consensus 140 ~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~ 219 (363)
.+..++...
T Consensus 87 ~~~~~~~~~----------------------------------------------------------------------- 95 (201)
T 2cdn_A 87 LVDDRLNNP----------------------------------------------------------------------- 95 (201)
T ss_dssp HHHHHTTSG-----------------------------------------------------------------------
T ss_pred HHHHHHhcc-----------------------------------------------------------------------
Confidence 122222210
Q ss_pred EEEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhc----CCCCCEEEE
Q psy11897 220 LFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKD----TKEPAIILY 295 (363)
Q Consensus 220 l~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~----~~~~d~vi~ 295 (363)
+....+|+||||++..|++.|... ...+|++|+
T Consensus 96 -------------------------------------------~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~ 132 (201)
T 2cdn_A 96 -------------------------------------------DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLE 132 (201)
T ss_dssp -------------------------------------------GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred -------------------------------------------cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 011237889999999988776543 235899999
Q ss_pred EeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCccccccccc
Q psy11897 296 LDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVK 360 (363)
Q Consensus 296 L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~ 360 (363)
|++|.+++.+|+.+|. |.+++++.+++|+..|.+...++.++|....+.||++.+.+++++
T Consensus 133 l~~~~e~~~~Rl~~R~----r~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~~eev~~ 193 (201)
T 2cdn_A 133 FRVSEEVLLERLKGRG----RADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFA 193 (201)
T ss_dssp EECCHHHHHHHHHHHC----CTTCSHHHHHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHH
T ss_pred EECCHHHHHHHHHcCC----CCCCCHHHHHHHHHHHHHhhHHHHHHhcCcEEEEeCCCCHHHHHH
Confidence 9999999999999984 667788999999999999999999999767888999887777654
No 25
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.83 E-value=2.1e-20 Score=170.70 Aligned_cols=171 Identities=27% Similarity=0.431 Sum_probs=134.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
++.|+|+|+|||||||+++.|+++++ +.+++++++++.....++.+|..+..++..|..++.+.. ...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~-----------~~~ 74 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE-LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVM-----------TRL 74 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS-SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHH-----------HHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-CeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHH-----------HHH
Confidence 46799999999999999999999997 999999999898887777889988888876665544332 111
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+.+++..-
T Consensus 75 ~~~~l~~~------------------------------------------------------------------------ 82 (227)
T 1zd8_A 75 ALHELKNL------------------------------------------------------------------------ 82 (227)
T ss_dssp HHHHHHTC------------------------------------------------------------------------
T ss_pred HHHHHhcc------------------------------------------------------------------------
Confidence 22233210
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCH
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPD 300 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~d 300 (363)
....+|+||||++..|++.|... ..+|++|+|++|.
T Consensus 83 -------------------------------------------~~~~~vid~~~~~~~~~~~l~~~-~~~~~vi~L~~~~ 118 (227)
T 1zd8_A 83 -------------------------------------------TQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPF 118 (227)
T ss_dssp -------------------------------------------TTSCEEEESCCCSHHHHHHHHTT-SCCCEEEEEECCH
T ss_pred -------------------------------------------cCCCEEEeCCCCCHHHHHHHHHh-cCCCEEEEEECCH
Confidence 01237889999999998888765 4689999999999
Q ss_pred HHHHHHHhhcCCC---------------------------CCCCCCcHHHHHHHHHHHHHHhhHHHHHhhh--cceeecC
Q psy11897 301 DVILARLVKRGLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFKS--HIAKVNF 351 (363)
Q Consensus 301 e~l~~Rl~~R~~~---------------------------~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~--~~~~v~~ 351 (363)
+++.+|+.+|... ..|.+|+.+.+++|+..|++.+.+++++|.+ .++.||+
T Consensus 119 ~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~ 198 (227)
T 1zd8_A 119 EVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSG 198 (227)
T ss_dssp HHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeC
Confidence 9999999987421 1256778899999999999999999999974 4889999
Q ss_pred ccccccccc
Q psy11897 352 LHKRRESVK 360 (363)
Q Consensus 352 ~~~~~~~~~ 360 (363)
. +.+++++
T Consensus 199 ~-~~~~v~~ 206 (227)
T 1zd8_A 199 T-ETNKIWP 206 (227)
T ss_dssp S-SHHHHHH
T ss_pred C-CHHHHHH
Confidence 8 7777654
No 26
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.83 E-value=1.8e-20 Score=167.64 Aligned_cols=177 Identities=36% Similarity=0.616 Sum_probs=133.2
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhh-ccCcchhHHHHHHHhCCccccccccCCCCCCCccch
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVR-TGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTV 138 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~-~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l 138 (363)
.++.|+|+|+|||||||+++.|+++++ +.+++++++++.... .++..|..++.++.+|.+.+.+.. .
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g-~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-----------~ 81 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS-FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT-----------L 81 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS-CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHH-----------H
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHH-----------H
Confidence 345799999999999999999999997 999999998787654 456788888888776655433221 0
Q ss_pred hhhhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCC
Q psy11897 139 GRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDN 218 (363)
Q Consensus 139 ~~~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~ 218 (363)
..+...+... +
T Consensus 82 ~~l~~~i~~~----------l----------------------------------------------------------- 92 (203)
T 1ukz_A 82 ALLRNAISDN----------V----------------------------------------------------------- 92 (203)
T ss_dssp HHHHHHHHHH----------H-----------------------------------------------------------
T ss_pred HHHHHHHHhh----------h-----------------------------------------------------------
Confidence 0011111100 0
Q ss_pred eEEEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeC
Q psy11897 219 RLFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDA 298 (363)
Q Consensus 219 ~l~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~ 298 (363)
......+++||||++.+++..|......+|++|+|++
T Consensus 93 -------------------------------------------~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~ 129 (203)
T 1ukz_A 93 -------------------------------------------KANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDC 129 (203)
T ss_dssp -------------------------------------------HTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEEC
T ss_pred -------------------------------------------ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEEC
Confidence 0000237789999999999988877767999999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCccccccccc
Q psy11897 299 PDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVK 360 (363)
Q Consensus 299 ~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~ 360 (363)
|.+++.+|+.+|....+|.+|+.+.+++|+..|.+...|+.++|... ++.||++.+.+++.+
T Consensus 130 ~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~ 193 (203)
T 1ukz_A 130 PEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYK 193 (203)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHH
T ss_pred CHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHH
Confidence 99999999998864446777889999999999999999999888643 556899888777654
No 27
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.82 E-value=3.3e-20 Score=164.30 Aligned_cols=175 Identities=37% Similarity=0.633 Sum_probs=135.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
++.|+|+|+|||||||+++.|+++++ +.+++.+++++.....++..|..+.+++..|...+.+.. ...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-----------~~~ 76 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG-YTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETV-----------LDM 76 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHH-----------HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-CeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHH-----------HHH
Confidence 34699999999999999999999997 999999998888777777888888888776654433221 111
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+...+...
T Consensus 77 ~~~~i~~~------------------------------------------------------------------------ 84 (196)
T 2c95_A 77 LRDAMVAK------------------------------------------------------------------------ 84 (196)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHHhc------------------------------------------------------------------------
Confidence 11111100
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCH
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPD 300 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~d 300 (363)
.+...++|+||||++.+|++.|......+|++|+|++|.
T Consensus 85 -----------------------------------------~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~ 123 (196)
T 2c95_A 85 -----------------------------------------VNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGP 123 (196)
T ss_dssp -----------------------------------------TTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCH
T ss_pred -----------------------------------------cccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCH
Confidence 001234888999999999988877667799999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCccccccccc
Q psy11897 301 DVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVK 360 (363)
Q Consensus 301 e~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~ 360 (363)
+++.+|+.+|....+|.+++.+.+++|++.|.+...++.++|.+. ++.||+..+.+++++
T Consensus 124 e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~ 185 (196)
T 2c95_A 124 ETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFS 185 (196)
T ss_dssp HHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHH
T ss_pred HHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHH
Confidence 999999999875556777788999999999999999999988753 467898877777654
No 28
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.82 E-value=9.8e-20 Score=160.31 Aligned_cols=172 Identities=33% Similarity=0.601 Sum_probs=133.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGRV 141 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~~ 141 (363)
..|+|+|+|||||||+++.|+++++ +.+++++++++.....++..|..+.+++..|...+.+.. ...+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-----------~~~l 74 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG-WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT-----------VKLL 74 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHH-----------HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC-CeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHH-----------HHHH
Confidence 4689999999999999999999997 999999998888877777889988888876654332221 0001
Q ss_pred hhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEE
Q psy11897 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLF 221 (363)
Q Consensus 142 ~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~ 221 (363)
...+..
T Consensus 75 ~~~i~~-------------------------------------------------------------------------- 80 (194)
T 1qf9_A 75 KNAIDA-------------------------------------------------------------------------- 80 (194)
T ss_dssp HHHHHT--------------------------------------------------------------------------
T ss_pred HHHHHh--------------------------------------------------------------------------
Confidence 111110
Q ss_pred EEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCC---CCCEEEEEeC
Q psy11897 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTK---EPAIILYLDA 298 (363)
Q Consensus 222 i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~---~~d~vi~L~~ 298 (363)
.....+++||||++.++++.|..... .+|++|+|++
T Consensus 81 -----------------------------------------~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~ 119 (194)
T 1qf9_A 81 -----------------------------------------NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDC 119 (194)
T ss_dssp -----------------------------------------STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEEC
T ss_pred -----------------------------------------cCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEEC
Confidence 01224788999999999888865433 5899999999
Q ss_pred CHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCccccccccc
Q psy11897 299 PDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVK 360 (363)
Q Consensus 299 ~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~ 360 (363)
|.+++.+|+.+|...++|.+++.+.+++|++.|.++..++.++|... ++.||++.+.+++++
T Consensus 120 ~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~ 183 (194)
T 1qf9_A 120 PEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYN 183 (194)
T ss_dssp CHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHH
T ss_pred CHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHH
Confidence 99999999999976667888899999999999999999999888653 478898877776654
No 29
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.82 E-value=5.5e-20 Score=163.23 Aligned_cols=175 Identities=29% Similarity=0.493 Sum_probs=134.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
++.|+|+|+|||||||+|+.|+++++ +.+++++++++.....++..|..+.+++..|...+.+.. ...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~-----------~~~ 79 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG-FTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV-----------LEL 79 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT-CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHH-----------HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHH-----------HHH
Confidence 34699999999999999999999997 999999999888887777788888888776654333221 011
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+...+...
T Consensus 80 ~~~~i~~~------------------------------------------------------------------------ 87 (199)
T 2bwj_A 80 LKEAMVAS------------------------------------------------------------------------ 87 (199)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred HHHHHhcc------------------------------------------------------------------------
Confidence 11111100
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCH
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPD 300 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~d 300 (363)
+ .....+++||||++..|++.|.+....+|++|+|++|.
T Consensus 88 -----------------------~------------------~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~ 126 (199)
T 2bwj_A 88 -----------------------L------------------GDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSA 126 (199)
T ss_dssp -----------------------T------------------TSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCH
T ss_pred -----------------------c------------------ccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCH
Confidence 0 01234888999999999988887666799999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCccccccccc
Q psy11897 301 DVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVK 360 (363)
Q Consensus 301 e~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~ 360 (363)
+++.+|+.+|.....|.+++.+.+++|+..|.+...++.++|.+. ++.||++.+.+++++
T Consensus 127 ~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~ 188 (199)
T 2bwj_A 127 DTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFL 188 (199)
T ss_dssp HHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence 999999999975556666677899999999999999999988753 478898877777654
No 30
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.81 E-value=2.5e-20 Score=164.12 Aligned_cols=169 Identities=28% Similarity=0.516 Sum_probs=129.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
++.|+|+|+|||||||+++.|+++++ +.+++++++++..+..++..|..+.+++..|...+.+... ..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~-~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~-----------~~ 71 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG-FKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL-----------EL 71 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT-CEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHH-----------HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHH-----------HH
Confidence 45799999999999999999999997 9999999998887777777888888887766544332210 00
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+..++.
T Consensus 72 ~~~~l~-------------------------------------------------------------------------- 77 (186)
T 3cm0_A 72 IREELA-------------------------------------------------------------------------- 77 (186)
T ss_dssp HHHHCC--------------------------------------------------------------------------
T ss_pred HHHHhc--------------------------------------------------------------------------
Confidence 010110
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcC----CCCCEEEEE
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDT----KEPAIILYL 296 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~----~~~d~vi~L 296 (363)
..++.||||++..|+..|...+ ..+|.+|+|
T Consensus 78 ---------------------------------------------~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l 112 (186)
T 3cm0_A 78 ---------------------------------------------ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLV 112 (186)
T ss_dssp ---------------------------------------------SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---------------------------------------------CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 0167789999998877654322 247999999
Q ss_pred eCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCccccccccc
Q psy11897 297 DAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVK 360 (363)
Q Consensus 297 ~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~ 360 (363)
++|.+++.+|+.+|....+|.+++.+.+++|+..|.+...|+.++|.+. .+.||++.+.+++++
T Consensus 113 ~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~ 178 (186)
T 3cm0_A 113 EVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYA 178 (186)
T ss_dssp ECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHH
T ss_pred eCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHH
Confidence 9999999999998852234778889999999999999999999999865 678898888777654
No 31
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.80 E-value=6.3e-20 Score=161.79 Aligned_cols=177 Identities=28% Similarity=0.531 Sum_probs=130.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc-cCcchhHHHHHHHhCCccccccccCCCCCCCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT-GNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR 140 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~-~~~~G~~l~~~~~~g~~~~~~~y~~~~~~~~G~~l~~ 140 (363)
+.|+|+|+|||||||+++.|+++++ +.+++.+++++..... .+..|..+..++..|...+.+... ..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~ 71 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG-YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITI-----------SL 71 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHH-----------HH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHH-----------HH
Confidence 4689999999999999999999997 9999999998776643 345677788777666544332210 00
Q ss_pred hhhhhcCCeEEECCeeEEeecCCCCCccCCCCcCccccceEeeeeCCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeE
Q psy11897 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL 220 (363)
Q Consensus 141 ~~nRI~~g~~~~~G~~y~L~~n~~~~~lHG~~~g~~~~~w~~~~~~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l 220 (363)
+..++... +.
T Consensus 72 l~~~~~~~----------~~------------------------------------------------------------ 81 (196)
T 1tev_A 72 LKREMDQT----------MA------------------------------------------------------------ 81 (196)
T ss_dssp HHHHHHHH----------HH------------------------------------------------------------
T ss_pred HHHHHHhh----------hc------------------------------------------------------------
Confidence 00111000 00
Q ss_pred EEEEEEEeCCCeeeccccccccccCCCCcccccccceEEEEeecceeeeccCCCCChhhHhHHHhcC---CCCCEEEEEe
Q psy11897 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDT---KEPAIILYLD 297 (363)
Q Consensus 221 ~i~~~~~~~~~~p~~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~~~i~DGfPrt~~qa~~l~~~~---~~~d~vi~L~ 297 (363)
. ......+++||||++.++.+.|.+.. ..+|++|+|+
T Consensus 82 ----------------------~------------------~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~ 121 (196)
T 1tev_A 82 ----------------------A------------------NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121 (196)
T ss_dssp ----------------------H------------------CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred ----------------------c------------------ccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEE
Confidence 0 00123478899999999887775533 2478999999
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCccccccccc
Q psy11897 298 APDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVK 360 (363)
Q Consensus 298 ~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~ 360 (363)
+|++++.+|+.+|....+|.+++.+.+++|+..|.+...|++++|.+. ++.||+..+.+++++
T Consensus 122 ~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~ 186 (196)
T 1tev_A 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFD 186 (196)
T ss_dssp CCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHH
T ss_pred CCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence 999999999999875567888899999999999999999999999864 568999887777654
No 32
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Probab=99.66 E-value=3.6e-16 Score=148.75 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=110.5
Q ss_pred ceEEecCc-cchhhhhccCcchhHHHHHHHhCC-c--cccccccCCCCC-CCcc-chhhhhhhhcCCeEEECCeeEEeec
Q psy11897 88 AIHISTGD-LLRAEVRTGNTRGRNIEAIMKQGG-L--VPDVSYLSSNNP-YFGS-TVGRVANRIAGGKFTIDKENFTISQ 161 (363)
Q Consensus 88 ~~~is~gd-llr~~i~~~~~~G~~l~~~~~~g~-~--~~~~~y~~~~~~-~~G~-~l~~~~nRI~~g~~~~~G~~y~L~~ 161 (363)
.+.|+... -+++.+.+ ..|+.+.++...|. + .+.+.|.....+ ..|+ +++|++|||++|+|.++|++|+|+.
T Consensus 13 ~~~l~n~~~g~~~~v~~--~~Ga~l~s~~~~g~~~l~~~~~~~~~~~~~~~gg~Pvl~P~~gri~~g~~~~~g~~y~l~~ 90 (289)
T 3k25_A 13 TYHLEDDQSLARLSLVP--GRGGLVTEWTVQGQPILYFDRERFQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYRLKQ 90 (289)
T ss_dssp EEEEEETTTTEEEEEEG--GGTSEEEEEEETTEECBCBCTTGGGSTTSCCCBSBCEEBSCSSCCGGGEEEETTEEEECCT
T ss_pred EEEEECCCCCeEEEeeh--hcCCEEEEEEeCCEEEEecChhhccCcccccCCCCCEEECCCCCCCCCEEEECCEEeecCC
Confidence 55666432 23444432 25665555443331 1 122344333323 4466 7999999999999999999999984
Q ss_pred CCCCCccCCCCcCccccceEee-eeCC---eEEEEEeCCC-CCCCCCceEEEEEEEEEccCCeEEEEEEEE--eCCCeee
Q psy11897 162 NVDVNHLHGGFKGFDKVIWSTY-VDKD---KVVMSHMSPD-GDEGYPGAVIATTTFQLTSDNRLFITMEAV--STKPTPI 234 (363)
Q Consensus 162 n~~~~~lHG~~~g~~~~~w~~~-~~~~---~vt~~~~~~~-~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~--~~~~~p~ 234 (363)
||+.+ .+.|++. ..++ +|+|++.+.+ +..+|||+|.++++|+|++ +.|.++++++ +++++|+
T Consensus 91 -------HGf~r---~~~W~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~~~N~~~~~~~~ 159 (289)
T 3k25_A 91 -------HGFAR---DLPWEVIGQQTQDNARLDLRLSHNDATLEAFPFAFELVFSYQLQG-HSLRIEQRIANLGDQRMPF 159 (289)
T ss_dssp -------TBSGG---GSCCEEEEEECSSSEEEEEEEECCHHHHTTSCSCEEEEEEEEEET-TEEEEEEEEEECSSSCEEE
T ss_pred -------CCCcc---cCCeEEEEecCCCCcEEEEEEecChhHHhcCCceEEEEEEEEEeC-CEEEEEEEEEcCCCCccee
Confidence 66532 4669964 3333 8999998865 5799999999999999974 7888888876 6899999
Q ss_pred ccccccccccCCCCcccccccceEEEEeecce
Q psy11897 235 NLTNHSYFNLAGHDIVREVLYKKMLQELAKAK 266 (363)
Q Consensus 235 ~l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~ 266 (363)
++|+|||||++. +.++.++.++..+
T Consensus 160 ~~~~H~yF~~~~-------~~~~~~~~~~~~~ 184 (289)
T 3k25_A 160 SLGFHPYFFCRE-------KLGITLAIPANDY 184 (289)
T ss_dssp CCEECCEEECSC-------CTTCEEECSCSEE
T ss_pred EEecCcEEccCC-------cceEEEEcCcccc
Confidence 999999999964 3345555555443
No 33
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.63 E-value=1.1e-15 Score=141.22 Aligned_cols=91 Identities=25% Similarity=0.430 Sum_probs=72.6
Q ss_pred eeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCC---------------------------CCCCCCCc
Q psy11897 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGL---------------------------TSGRPDDK 320 (363)
Q Consensus 268 ~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~---------------------------~~~r~dd~ 320 (363)
++++|+|++..+++.+... ..++++++|++|.+++.+|+.+|.. ..++.+++
T Consensus 107 ~il~g~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~~ 185 (246)
T 2bbw_A 107 WLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDK 185 (246)
T ss_dssp EEEESCCCSHHHHHHHHTT-CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGGGS
T ss_pred EEEECCCCCHHHHHHHHhh-cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCCCc
Confidence 6678999988887777643 4588999999999999999987731 12334557
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhc--ceeecCccccccccc
Q psy11897 321 EDAIKKRLIKANENDGPILQAFKSH--IAKVNFLHKRRESVK 360 (363)
Q Consensus 321 ~e~i~~Rl~~~~~~~~~i~~~~~~~--~~~v~~~~~~~~~~~ 360 (363)
.+.+.+|+..|.++..+++++|.+. ++.||+..+ +++.+
T Consensus 186 ~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~ 226 (246)
T 2bbw_A 186 PEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWP 226 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHH
Confidence 8899999999999999999999874 789999877 66543
No 34
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A*
Probab=99.54 E-value=4e-16 Score=148.65 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=101.4
Q ss_pred ceEEecCccc--hhhhhccCcchhHHHHHHHhCC-c--cccccccCCCCCCCc--cchhhhhhhhcCCeEEECCeeEEee
Q psy11897 88 AIHISTGDLL--RAEVRTGNTRGRNIEAIMKQGG-L--VPDVSYLSSNNPYFG--STVGRVANRIAGGKFTIDKENFTIS 160 (363)
Q Consensus 88 ~~~is~gdll--r~~i~~~~~~G~~l~~~~~~g~-~--~~~~~y~~~~~~~~G--~~l~~~~nRI~~g~~~~~G~~y~L~ 160 (363)
.+.|+.+... ++.|.. .|+.+.++...|. + ..+...+..+.++.| ++++|+.||+++|+ ++|+|
T Consensus 9 ~~~L~n~~~~~~~~~i~~---~Ga~l~s~~~~G~~vl~~~~~~~~~~~~~~~GGip~l~P~~gr~~~~~-----~~y~l- 79 (297)
T 2cir_A 9 EVVLTHPADETTSVHILK---YGATVYSWKLKSEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDE-----HLSKL- 79 (297)
T ss_dssp EEEEEETTEEEEEEEEET---BTTEEEEEEETTEECBCBCTTCCCSSSSCCSBSBCEEBSCSSCCSSST-----TGGGS-
T ss_pred EEEEeCCCCceeEEEEEC---CCcEEEEEEeCCeEEEecCcHHHhcCCCCccCCCCEEEEecCCCCCCc-----ccCCC-
Confidence 5667776655 566665 6666666543331 1 122333345567888 89999999998874 44444
Q ss_pred cCCCCCccCCCCcCcc-ccceEee-ee-C--CeEEEEEeC----CCCCCCCCceEEEEEEEEEccCCeEEEEEEEE--e-
Q psy11897 161 QNVDVNHLHGGFKGFD-KVIWSTY-VD-K--DKVVMSHMS----PDGDEGYPGAVIATTTFQLTSDNRLFITMEAV--S- 228 (363)
Q Consensus 161 ~n~~~~~lHG~~~g~~-~~~w~~~-~~-~--~~vt~~~~~----~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~--~- 228 (363)
.+| ||. .+.|++. .. + .+++|++.+ ++++++|||+|.++++|+|++ +.|.++++++ +
T Consensus 80 ------~~H----Gfar~~~W~v~~~~~~~~~~v~l~l~s~~~~~~~~~g~P~~~~~~vty~L~~-~~L~i~~~~~N~~~ 148 (297)
T 2cir_A 80 ------PQH----GLARNSTWEFLGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVELGS-DYLKTAIEVENTSS 148 (297)
T ss_dssp ------CTT----BSGGGSBCEEEEEEEETTEEEEEEECGGGSCHHHHHHSCCCCEEEEEEEECS-SEEEEEEEEECCCS
T ss_pred ------CCc----cccCCCceEEEeeccCCceEEEEEecCCCCCHHHHhhCCCcEEEEEEEEEcC-CEEEEEEEEEcCCC
Confidence 344 554 4679964 32 2 478999988 677899999999999999987 8999999985 6
Q ss_pred CCCeeeccccccccccCC
Q psy11897 229 TKPTPINLTNHSYFNLAG 246 (363)
Q Consensus 229 ~~~~p~~l~~H~yFnl~g 246 (363)
++++|+++|+|||||+++
T Consensus 149 d~~~~~~~~~H~YFnl~~ 166 (297)
T 2cir_A 149 SKELKFNWLFHTYFRIED 166 (297)
T ss_dssp SCCEEEEEEECCEEECSC
T ss_pred CcceEEeeecCceEeCCC
Confidence 899999999999999976
No 35
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.53 E-value=5.3e-15 Score=135.94 Aligned_cols=87 Identities=18% Similarity=0.297 Sum_probs=62.1
Q ss_pred CCCCChhhHh-----HHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcc
Q psy11897 272 GYPRDKDQAD-----QFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHI 346 (363)
Q Consensus 272 GfPrt~~qa~-----~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~ 346 (363)
|+|++..++. .+......||++|+|++|.+++.+|+.+|+....|.++..+.+.+|+......+. +.|...+
T Consensus 126 g~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~~~~~~rv~~~y~~l~---~~~~~~~ 202 (229)
T 4eaq_A 126 GYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEII---HNESQRF 202 (229)
T ss_dssp CCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHT---TTCTTTE
T ss_pred HhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHH---HhCCCCE
Confidence 8999887653 3334456899999999999999999999976566776666778888876554442 3455568
Q ss_pred eeecCcccccccccC
Q psy11897 347 AKVNFLHKRRESVKS 361 (363)
Q Consensus 347 ~~v~~~~~~~~~~~~ 361 (363)
+.||++.+.++++++
T Consensus 203 ~vIDa~~s~eev~~~ 217 (229)
T 4eaq_A 203 KSVNADQPLENVVED 217 (229)
T ss_dssp EEEETTSCHHHHHHH
T ss_pred EEEeCCCCHHHHHHH
Confidence 899999998887653
No 36
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A
Probab=99.46 E-value=1.5e-14 Score=138.81 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=101.6
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHhCC--cc--ccccccCCCCCCCc--cchhhhhhhhcCCeEEECCeeEEeec
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQGG--LV--PDVSYLSSNNPYFG--STVGRVANRIAGGKFTIDKENFTISQ 161 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~g~--~~--~~~~y~~~~~~~~G--~~l~~~~nRI~~g~~~~~G~~y~L~~ 161 (363)
.+.|+.+. +++.|.. .|+.+.++...++ ++ .+...+....+++| .+++|++||+++|
T Consensus 43 ~~~L~n~~-~~a~I~~---~GA~l~s~~~~~g~evL~~~~~~~~~~~~~~~GG~pil~P~~gRi~~g------------- 105 (309)
T 2hta_A 43 LIVVDHPQ-VKASFAL---QGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWFGPAAQQ------------- 105 (309)
T ss_dssp EEEEEETT-EEEEEET---BTTEEEEEEETTSCCCBCBCTTCCCCTTCCCSBSBCEEBSCCSSCSST-------------
T ss_pred EEEEeCCC-eEEEEec---cCcEEEEEEeCCCCEEEeCCchHhccCCCCeeccceEEEecCCCCCCC-------------
Confidence 56676665 4777765 7777666553332 11 22232344455665 3999999999873
Q ss_pred CCCCCccCCCCcCccccceEeee-eC----CeEEEEEeCC-CCCCCCCceEEEEEEEEEccCCeEEEEEEEEeCCCeeec
Q psy11897 162 NVDVNHLHGGFKGFDKVIWSTYV-DK----DKVVMSHMSP-DGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPIN 235 (363)
Q Consensus 162 n~~~~~lHG~~~g~~~~~w~~~~-~~----~~vt~~~~~~-~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~~~~p~~ 235 (363)
++.+||+. ..+.|++.. .+ ..++|++.+. +++++|||+|.++++|+| +++|.+++++++ ++|++
T Consensus 106 ---~~~~HGfa---r~~~W~v~~~~~~~~~~~v~l~l~s~~~~~~gyP~~~~l~vty~L--~~~L~i~~~~~N--~~~~~ 175 (309)
T 2hta_A 106 ---GLPSHGFA---RNLPWALKAHNEDDNGVMLTFELQSSEATRKYWPHDFTLLARFKV--GKTCEIELEAHG--EFATT 175 (309)
T ss_dssp ---TCCTTBSG---GGSBCEEEEEEECSSCEEEEEEEECCHHHHHHSCCCCEEEEEEEE--SSSEEEEEEEES--SEEEE
T ss_pred ---CCCCccCc---CCCceEEEeEecCCCceEEEEEeCCChHHhhcCCCceEEEEEEEE--CCceEEEEEEEC--CeEeh
Confidence 23445443 246799643 32 4789999885 578999999999999999 689999999987 99999
Q ss_pred cccccccccCCCCcccccccceEEEEeecce
Q psy11897 236 LTNHSYFNLAGHDIVREVLYKKMLQELAKAK 266 (363)
Q Consensus 236 l~~H~yFnl~g~~~~~~~i~~~~l~l~a~~~ 266 (363)
+|+|||||+++. .++.|++.+..+
T Consensus 176 ~g~H~YFnl~~~-------~~~~l~~~~~~~ 199 (309)
T 2hta_A 176 SALHSYFNVGDI-------ANVKVSGLGDRF 199 (309)
T ss_dssp EEECCEEECSCG-------GGCEEECCCSEE
T ss_pred hcCCceEecCCc-------cceEEECCCCce
Confidence 999999999752 356666664443
No 37
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.46 E-value=4e-13 Score=115.31 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=62.6
Q ss_pred eeeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcc
Q psy11897 267 LFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHI 346 (363)
Q Consensus 267 ~~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~ 346 (363)
.++.||+ ++..+++.|.+....++++|+|++|.+++.+|+..|... ....+.+.+.+|+..... .++..++...-
T Consensus 80 ~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~--~~~~~~~~~~~r~~~~~~--~~~~~~~~~ad 154 (179)
T 3lw7_A 80 LVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRS--DDSKEISELIRRDREELK--LGIGEVIAMAD 154 (179)
T ss_dssp CEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC------CCCHHHHHHHHHHHHH--HTHHHHHHTCS
T ss_pred eEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCC--CCcchHHHHHHHHHhhhc--cChHhHHHhCC
Confidence 4788999 889999999888778899999999999999999998532 112567888888754322 22334444345
Q ss_pred eeecCccccccccc
Q psy11897 347 AKVNFLHKRRESVK 360 (363)
Q Consensus 347 ~~v~~~~~~~~~~~ 360 (363)
+.||.+.+.+++++
T Consensus 155 ~vId~~~~~~~~~~ 168 (179)
T 3lw7_A 155 YIITNDSNYEEFKR 168 (179)
T ss_dssp EEEECCSCHHHHHH
T ss_pred EEEECCCCHHHHHH
Confidence 56676667666543
No 38
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.39 E-value=1.1e-12 Score=115.79 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=51.2
Q ss_pred eccCCCCChh-----hHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHH-HHHHHHhhHHHHHh
Q psy11897 269 LIDGYPRDKD-----QADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRL-IKANENDGPILQAF 342 (363)
Q Consensus 269 i~DGfPrt~~-----qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl-~~~~~~~~~i~~~~ 342 (363)
+.+|++++.. +...+......||++|+|++|.+++.+|+.+| +|.++. .+.+|+ ..|.+ +.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R----~~~~~~--~~~~~~~~~~~~----~~~~~ 165 (197)
T 2z0h_A 96 AYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL----NRFEKR--EFLERVREGYLV----LAREH 165 (197)
T ss_dssp HHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-------CCCCCH--HHHHHHHHHHHH----HHHHC
T ss_pred HHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhcc----CcccHH--HHHHHHHHHHHH----HHHhC
Confidence 3457776654 33333444557999999999999999999988 344443 444444 44433 33445
Q ss_pred hhcceeecCccccccccc
Q psy11897 343 KSHIAKVNFLHKRRESVK 360 (363)
Q Consensus 343 ~~~~~~v~~~~~~~~~~~ 360 (363)
...++.||++.+.+++++
T Consensus 166 ~~~~~~Id~~~~~e~~~~ 183 (197)
T 2z0h_A 166 PERIVVLDGKRSIEEIHR 183 (197)
T ss_dssp TTTEEEEETTSCHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHH
Confidence 545778999888877654
No 39
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.34 E-value=3.4e-12 Score=113.85 Aligned_cols=82 Identities=24% Similarity=0.529 Sum_probs=57.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcch--------hHHHHHHHhCCccccccccCCCCCCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRG--------RNIEAIMKQGGLVPDVSYLSSNNPYF 134 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G--------~~l~~~~~~g~~~~~~~y~~~~~~~~ 134 (363)
+|||+||+||||||++++|.+.+++.+.+++... +....+++..| .+++.++.+|.+++...| +..+|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~T-TR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~---~g~~Y 78 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSST-TRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQF---SGNYY 78 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEE-CSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE---TTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEe-ccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEE---cCcee
Confidence 5899999999999999999999875577777665 44455555555 367777777777665444 35566
Q ss_pred ccchhhhhhhhcCC
Q psy11897 135 GSTVGRVANRIAGG 148 (363)
Q Consensus 135 G~~l~~~~nRI~~g 148 (363)
|.....+...++.|
T Consensus 79 Gt~~~~v~~~l~~g 92 (186)
T 1ex7_A 79 GSTVASVKQVSKSG 92 (186)
T ss_dssp EEEHHHHHHHHHHT
T ss_pred eeecceeeehhhCC
Confidence 66666555555543
No 40
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.31 E-value=1e-11 Score=108.86 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=50.8
Q ss_pred ccCCCCChh--hHhHHH---hcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHH-HHHHHHhhHHHHHhh
Q psy11897 270 IDGYPRDKD--QADQFV---KDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRL-IKANENDGPILQAFK 343 (363)
Q Consensus 270 ~DGfPrt~~--qa~~l~---~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl-~~~~~~~~~i~~~~~ 343 (363)
.+|+|+..+ +...+. .....+|++|+|+||.+++.+|+.+| +|.+ .++ +.+|+ ..|.+.. +.|
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r----~~~~-~~~-~~~~~~~~~~~~~----~~~- 166 (195)
T 2pbr_A 98 YQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK----NRFE-NKE-FLEKVRKGFLELA----KEE- 166 (195)
T ss_dssp HHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT----TCCC-CHH-HHHHHHHHHHHHH----HHS-
T ss_pred HccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc----Cccc-hHH-HHHHHHHHHHHHH----hhC-
Confidence 357887654 333332 22236999999999999999999865 2333 334 55555 4454332 234
Q ss_pred hcceeecCccccccccc
Q psy11897 344 SHIAKVNFLHKRRESVK 360 (363)
Q Consensus 344 ~~~~~v~~~~~~~~~~~ 360 (363)
+.++.||++.+.+++.+
T Consensus 167 ~~~~~Id~~~~~~~~~~ 183 (195)
T 2pbr_A 167 ENVVVIDASGEEEEVFK 183 (195)
T ss_dssp TTEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCHHHHHH
Confidence 45678888877776654
No 41
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.27 E-value=3.8e-12 Score=115.07 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=46.4
Q ss_pred cCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 286 DTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 286 ~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
....||++|+|++|.+++.+|+.+|+....|.+.....+.+|+.... ..+.+.+.++++.|||+.+.+++.++
T Consensus 121 ~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f~~~v~~~Y---~~l~~~~~~~~~~IDa~~~~e~V~~~ 193 (205)
T 4hlc_A 121 NGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGY---QEIIHNESQRFKSVNADQPLENVVED 193 (205)
T ss_dssp TTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHHHHHHHHHH---HHHHHSCCTTEEEEETTSCHHHHHHH
T ss_pred cCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHHHHHHHHHH---HHHHHhCCCCEEEEECCCCHHHHHHH
Confidence 34579999999999999999999987655555433345555543322 22334455568899999998887643
No 42
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.25 E-value=1.8e-11 Score=105.33 Aligned_cols=75 Identities=23% Similarity=0.153 Sum_probs=48.9
Q ss_pred hhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcc-ccc
Q psy11897 278 DQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLH-KRR 356 (363)
Q Consensus 278 ~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~-~~~ 356 (363)
.+...+......||++|+|++|.+++.+|+.+|. |.....+.+++..+.| ..+...|....+.||++. +.+
T Consensus 83 ~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~----r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~id~~~~~~~ 154 (173)
T 3kb2_A 83 RQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG----DEYIEGKDIDSILELY----REVMSNAGLHTYSWDTGQWSSD 154 (173)
T ss_dssp HHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS----CSCCCHHHHHHHHHHH----HHHHHTCSSCEEEEETTTSCHH
T ss_pred HHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC----CcchhhhHHHHHHHHH----HHHHhhcCCCEEEEECCCCCHH
Confidence 3445555555679999999999999999999984 3223333333333444 334445655577889884 777
Q ss_pred cccc
Q psy11897 357 ESVK 360 (363)
Q Consensus 357 ~~~~ 360 (363)
++++
T Consensus 155 ev~~ 158 (173)
T 3kb2_A 155 EIAK 158 (173)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 43
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.22 E-value=4.5e-11 Score=106.92 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=49.4
Q ss_pred eeeccCCCCChhhHhHHHhcCCC-CCEEEEEe-CCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhH-HHHHhh
Q psy11897 267 LFLIDGYPRDKDQADQFVKDTKE-PAIILYLD-APDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGP-ILQAFK 343 (363)
Q Consensus 267 ~~i~DGfPrt~~qa~~l~~~~~~-~d~vi~L~-~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~-i~~~~~ 343 (363)
..|+|+.|.... .+.+.... ..++|+|+ +|.+++.+|+.+|. .++++.+++|+...+....+ ..++|.
T Consensus 105 ~vi~d~~~~~~~---~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~------~~~~~~i~~rl~~~~~~~~~~~~~~~d 175 (204)
T 2qor_A 105 ICLFEMNINGVK---QLKESKHIQDGIYIFVKPPSIDILLGRLKNRN------TEKPEEINKRMQELTREMDEADKVGFN 175 (204)
T ss_dssp EEEEECCHHHHH---HHHHCSSCSCCEEEEEECSCHHHHHHHHHTCT------TSCHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred eEEEEECHHHHH---HHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHhhhccCc
Confidence 356666443333 33333311 13889998 99999999999885 34678899999988765544 223222
Q ss_pred hcceeecCcccccccc
Q psy11897 344 SHIAKVNFLHKRRESV 359 (363)
Q Consensus 344 ~~~~~v~~~~~~~~~~ 359 (363)
++.+|. +.++++
T Consensus 176 --~vi~n~--~~e~~~ 187 (204)
T 2qor_A 176 --YFIVND--DLARTY 187 (204)
T ss_dssp --EEEECS--SHHHHH
T ss_pred --EEEECc--CHHHHH
Confidence 455564 444443
No 44
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.21 E-value=7.9e-13 Score=121.53 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=49.3
Q ss_pred cCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 286 DTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 286 ~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
....||++|+|++|.+++.+|+.+|.. ..|.+.....+.+|+..... .+.+.|.+.++.||++.+.+++.++
T Consensus 148 ~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-~dr~E~~~~ef~~rv~~~Y~---~la~~~~~~~~vIDa~~s~eeV~~~ 219 (227)
T 3v9p_A 148 GGFQPDLTVLFDVPPQIASARRGAVRM-PDKFESESDAFFARTRAEYL---RRAQEAPHRFVIVDSSEPIAQIRKQ 219 (227)
T ss_dssp TTCCCSEEEEEECCSSCGGGTTTCCCC-C---CCHHHHHHHHHHHHHH---HHHHHCTTTEEEEETTSCHHHHHHH
T ss_pred cCCCCCEEEEEeCCHHHHHHHHHhccC-ccchhhhhHHHHHHHHHHHH---HHHHHhcCCEEEEeCCCCHHHHHHH
Confidence 356799999999999999999998852 23444433455556544333 3344566678999999999887653
No 45
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.19 E-value=7.9e-11 Score=101.95 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=50.0
Q ss_pred eeeccCCCCChhhHhHHHhc---CCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHH
Q psy11897 267 LFLIDGYPRDKDQADQFVKD---TKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANEN 334 (363)
Q Consensus 267 ~~i~DGfPrt~~qa~~l~~~---~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~ 334 (363)
.+++|+++.+..+.+.|.+. ...+..+|+|+||.+++.+|+..|.. .+.+++.++++++.|.+.
T Consensus 80 ~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~----~~~~~~~i~~~~~~~~~~ 146 (181)
T 1ly1_A 80 GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT----KAVPIDVLRSMYKSMREY 146 (181)
T ss_dssp EEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG----GCCCHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc----CCCCHHHHHHHHHHhhcc
Confidence 48889999888777766543 22355899999999999999998863 145678899999998775
No 46
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.18 E-value=2.8e-11 Score=105.84 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=32.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCC----ceEEecCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPE----AIHISTGDLLRAEV 101 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~----~~~is~gdllr~~i 101 (363)
+.|+|+|+|||||||+++.|++++++ +.+++.++.+++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 46899999999999999999999842 67777777765544
No 47
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=3e-11 Score=107.63 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=54.1
Q ss_pred CCCCChhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHh-hcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeec
Q psy11897 272 GYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLV-KRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVN 350 (363)
Q Consensus 272 GfPrt~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~-~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~ 350 (363)
|.+...+..+.+.+ ++.+|+|++|.+++.+|+. .|.......+++.+.+..++....+...+ +|...-+.||
T Consensus 104 g~~~~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~---~y~~ad~~Id 176 (199)
T 3vaa_A 104 GAPCFYDNMEFMNR----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAP---FYTQAQYIFN 176 (199)
T ss_dssp TGGGSTTHHHHHHH----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHH---HHTTSSEEEE
T ss_pred cEEccHHHHHHHHc----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHH---HHhhCCEEEE
Confidence 34544555555544 6799999999999999998 44321111245567778888877776666 4555556777
Q ss_pred Ccc-ccccccc
Q psy11897 351 FLH-KRRESVK 360 (363)
Q Consensus 351 ~~~-~~~~~~~ 360 (363)
.+. +.++++.
T Consensus 177 t~~~s~ee~~~ 187 (199)
T 3vaa_A 177 ADELEDRWQIE 187 (199)
T ss_dssp CCCCSSHHHHH
T ss_pred CCCCCHHHHHH
Confidence 766 6666554
No 48
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.17 E-value=4.4e-11 Score=106.28 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=54.6
Q ss_pred eeccCCCCCh-----------hhHhHHHhcCCCCCEEEEEeCCHHHHHHHHh-hcCCCCCC---------CC---CcHHH
Q psy11897 268 FLIDGYPRDK-----------DQADQFVKDTKEPAIILYLDAPDDVILARLV-KRGLTSGR---------PD---DKEDA 323 (363)
Q Consensus 268 ~i~DGfPrt~-----------~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~-~R~~~~~r---------~d---d~~e~ 323 (363)
.+.|+||.+. +.+..+.+....+|++|+|++|.+++.+|+. .|.. ..| .. +.++.
T Consensus 89 vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~-~~~~~~g~~~~~~~d~~e~~~~ 167 (213)
T 2plr_A 89 VISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRK-IKPQEAGADIFPGLSPEEGFLK 167 (213)
T ss_dssp EEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCC-CCTTTTTTTTCTTSCHHHHHHH
T ss_pred EEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccc-ccccccccccccccchhhhHHH
Confidence 5667666542 2233444445569999999999999999999 7752 122 01 12245
Q ss_pred HHHHHHHHHHHhhHHHHHhhhcceeecCccccccccc
Q psy11897 324 IKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVK 360 (363)
Q Consensus 324 i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~ 360 (363)
+.+|+..+...+.. .| .++.||++.+.+++++
T Consensus 168 ~~~r~~~~~~~~~~---~~--~~~~Id~~~~~e~v~~ 199 (213)
T 2plr_A 168 YQGLITEVYDKLVK---DE--NFIVIDGTKTPKEIQI 199 (213)
T ss_dssp HHHHHHHHHHHHTT---TT--TCEEEETTSCHHHHHH
T ss_pred HHHHHHHHHHHHHh---hC--CEEEEECCCCHHHHHH
Confidence 66676665444321 12 4788999888777654
No 49
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.17 E-value=5.1e-12 Score=112.78 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=38.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQG 118 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g 118 (363)
++.|+|+|+|||||||+++.|+++++ ..++++ +.++.. ..++..|..++.++..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~-~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~ 64 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK-NNNVEV-KHLYFP-NRETGIGQIISKYLKME 64 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH-HTTCCE-EEEESS-CTTSHHHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcE-EEEecC-CCCCcHHHHHHHHHhcC
Confidence 45799999999999999999999986 655665 343432 22345677777666433
No 50
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.16 E-value=1.1e-10 Score=103.98 Aligned_cols=83 Identities=11% Similarity=0.124 Sum_probs=52.9
Q ss_pred eeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcce
Q psy11897 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIA 347 (363)
Q Consensus 268 ~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~ 347 (363)
+|+|+......+.+.+......++.+|+|++|.+++.+|+.+|.. +.. ..+.+.++++.+ .++ +.....+
T Consensus 89 vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~---~~~-~~~~~~~~~~~~----~~~--~~~~~~~ 158 (202)
T 3t61_A 89 VVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTG---HFM-PSSLLQTQLETL----EDP--RGEVRTV 158 (202)
T ss_dssp CEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHS---SCC-CHHHHHHHHHHC----CCC--TTSTTEE
T ss_pred EEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhc---cCC-CHHHHHHHHHhc----CCC--CCCCCeE
Confidence 555655555666667777666678999999999999999999852 212 245455444443 222 1122366
Q ss_pred eecCccccccccc
Q psy11897 348 KVNFLHKRRESVK 360 (363)
Q Consensus 348 ~v~~~~~~~~~~~ 360 (363)
.||++.+.++++.
T Consensus 159 ~Id~~~~~~e~~~ 171 (202)
T 3t61_A 159 AVDVAQPLAEIVR 171 (202)
T ss_dssp EEESSSCHHHHHH
T ss_pred EEeCCCCHHHHHH
Confidence 7888877766553
No 51
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.14 E-value=1.6e-10 Score=101.02 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=32.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCC----ceEEecCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPE----AIHISTGDLLRAEV 101 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~----~~~is~gdllr~~i 101 (363)
+.|+|.|+|||||||+++.|+++++. +.+++.+++++..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~ 47 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVA 47 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHH
Confidence 46899999999999999999998842 67888777766544
No 52
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.14 E-value=3.3e-11 Score=109.49 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=50.7
Q ss_pred hcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 285 KDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 285 ~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
.....||++|+|++|.+++.+|+..|.. ..|.+.....+.+|+..... .+.+.|...++.||+..+.+++.++
T Consensus 127 ~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~-~dr~E~~~~~~~~rv~~~y~---~l~~~~~~~~~vIDa~~s~eeV~~~ 199 (213)
T 4edh_A 127 QGDLRPDLTLVFDLPVEIGLARAAARGR-LDRFEQEDRRFFEAVRQTYL---QRAAQAPERYQVLDAGLPLAEVQAG 199 (213)
T ss_dssp HTTCCCSEEEEEECCHHHHHHHHCCCSS-CCTTTTSCHHHHHHHHHHHH---HHHHHCTTTEEEEETTSCHHHHHHH
T ss_pred hcCCCCCEEEEEeCCHHHHHHHHHhcCC-cCcccccHHHHHHHHHHHHH---HHHHHCCCcEEEEeCCCCHHHHHHH
Confidence 3456899999999999999999998852 23444322455556543332 3344566678999999998887643
No 53
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.11 E-value=1.5e-11 Score=113.63 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=45.6
Q ss_pred HHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 283 FVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 283 l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
|......||++|+|++|.+++.+|+.+|+. ..|.+.....+.+|+...... +.+.+.+ ++.||+..+.+++.++
T Consensus 148 ~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~-~dr~E~~~~~~~~rv~~~y~~---la~~~~~-~~vIDa~~sieeV~~~ 221 (236)
T 3lv8_A 148 TALGDFKPDLTLYLDIDPKLGLERARGRGE-LDRIEKMDISFFERARERYLE---LANSDDS-VVMIDAAQSIEQVTAD 221 (236)
T ss_dssp HHHTTCCCSEEEEEECCHHHHHHC-----C-CCTTTTSCHHHHHHHHHHHHH---HHHHCTT-EEEEETTSCHHHHHHH
T ss_pred HHhcCCCCCEEEEEeCCHHHHHHHHHhcCC-cchhhhhHHHHHHHHHHHHHH---HHHHCCC-EEEEeCCCCHHHHHHH
Confidence 333456899999999999999999998852 234333224566666544332 2333444 8899999999887653
No 54
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.09 E-value=8.4e-11 Score=104.20 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=36.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHHHHHHhC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQG 118 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~~~~~~g 118 (363)
++.|+|+|+|||||||+++.|+++++++.+++.... . ..+..|..+..++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~----~-~~~~~g~~i~~~~~~~ 56 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP----Q-RSTVTGKMIDDYLTRK 56 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS----C-TTSHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC----C-CCCcHHHHHHHHHhcC
Confidence 457999999999999999999999832555553321 1 1234566677666433
No 55
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.07 E-value=7.7e-11 Score=107.13 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=50.6
Q ss_pred hHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCccccccccc
Q psy11897 281 DQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVK 360 (363)
Q Consensus 281 ~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~ 360 (363)
..+......||++|+|++|.+++.+|+.+|+. ..|.+.....+.+|+......+ .+.+ ..++.||+..+.+++.+
T Consensus 124 ~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~-~dr~E~~~~~f~~rv~~~y~~l---a~~~-~~~~vIDa~~s~eeV~~ 198 (213)
T 4tmk_A 124 RDAVLGDFRPDLTLYLDVTPEVGLKRARARGE-LDRIEQESFDFFNRTRARYLEL---AAQD-KSIHTIDATQPLEAVMD 198 (213)
T ss_dssp HHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS-CCTTTTSCHHHHHHHHHHHHHH---HHTC-TTEEEEETTSCHHHHHH
T ss_pred HHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC-ccchhhhHHHHHHHHHHHHHHH---HHHC-CcEEEECCCCCHHHHHH
Confidence 33444456899999999999999999999853 2344432244555555333322 2223 46889999999988765
Q ss_pred C
Q psy11897 361 S 361 (363)
Q Consensus 361 ~ 361 (363)
+
T Consensus 199 ~ 199 (213)
T 4tmk_A 199 A 199 (213)
T ss_dssp H
T ss_pred H
Confidence 3
No 56
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.06 E-value=4.1e-10 Score=106.18 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=50.9
Q ss_pred eeeccCCCCChhhHhHHHhc---CCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy11897 267 LFLIDGYPRDKDQADQFVKD---TKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDG 336 (363)
Q Consensus 267 ~~i~DGfPrt~~qa~~l~~~---~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~ 336 (363)
.+++||++.+..+.+.|.+. ...++.+|+|++|.+++.+|+..|.. .+..++.+++|++.|.+...
T Consensus 80 ~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~----~~~~~e~i~~~~~~~~~~~~ 148 (301)
T 1ltq_A 80 GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT----KAVPIDVLRSMYKSMREYLG 148 (301)
T ss_dssp EEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG----GCCCHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC----CCCCHHHHHHHHHHHhcccC
Confidence 47889988887777666532 23456899999999999999999863 24567899999999877643
No 57
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.03 E-value=1.1e-09 Score=94.46 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=43.7
Q ss_pred CCEEEEEeCCHHHHHHHHh--hcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCc-ccccccc
Q psy11897 290 PAIILYLDAPDDVILARLV--KRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFL-HKRRESV 359 (363)
Q Consensus 290 ~d~vi~L~~~de~l~~Rl~--~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~-~~~~~~~ 359 (363)
++++|+|++|.+++.+|+. .|.. .|.....+...+|+..+.....+ +|....+.||+. .+.++++
T Consensus 94 ~~~~i~l~~~~e~~~~R~~~~~r~~--~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Id~~~~~~~~~~ 161 (173)
T 1e6c_A 94 HGTVVYLFAPAEELALRLQASLQAH--QRPTLTGRPIAEEMEAVLREREA---LYQDVAHYVVDATQPPAAIV 161 (173)
T ss_dssp HSEEEEEECCHHHHHHHHHHHHCSC--CCCCTTHHHHHHHHHHHHHHHHH---HHHHHCSEEEETTSCHHHHH
T ss_pred CCeEEEEECCHHHHHHHHhhccCCC--CCCcCCCCCHHHHHHHHHHHHHH---HHHhCcEEEECCCCCHHHHH
Confidence 5799999999999999999 7731 34443445566777776655544 344345567777 5666554
No 58
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.99 E-value=3.1e-10 Score=99.49 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=32.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEV 101 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i 101 (363)
++.|+|+|+|||||||+++.|+++++ ..+++.+.+ +..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~-~~~i~~D~~-~~~~ 43 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR-LPLLSKDAF-KEVM 43 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT-CCEEEHHHH-HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC-CeEecHHHH-HHHH
Confidence 34689999999999999999999996 888886544 4443
No 59
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.98 E-value=6.4e-10 Score=99.15 Aligned_cols=71 Identities=13% Similarity=0.036 Sum_probs=39.7
Q ss_pred HHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCccccccccc
Q psy11897 282 QFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVK 360 (363)
Q Consensus 282 ~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~ 360 (363)
.+......+|++|+|++|.+++.+|+..|. .|.++ +.+.+|+......... .+...++.||++.+.+++++
T Consensus 122 ~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~---~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~Id~~~~~e~~~~ 192 (215)
T 1nn5_A 122 QPDVGLPKPDLVLFLQLQLADAAKRGAFGH---ERYEN--GAFQERALRCFHQLMK---DTTLNWKMVDASKSIEAVHE 192 (215)
T ss_dssp GGGTTSBCCSEEEEEECCHHHHHHC--------CTTCS--HHHHHHHHHHHHHHTT---CTTSCEEEEETTSCHHHHHH
T ss_pred HHHhCCCCCCEEEEEeCCHHHHHHHhccCc---cccch--HHHHHHHHHHHHHHHH---hCCCCEEEEECCCCHHHHHH
Confidence 344334468999999999999999986331 23332 3455555432222211 12234678888877776654
No 60
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.94 E-value=5.2e-10 Score=101.90 Aligned_cols=80 Identities=13% Similarity=-0.036 Sum_probs=53.2
Q ss_pred hhhHhHHHhcCCCCCEEEEE-eCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHH-HHHhhhcceeec-Ccc
Q psy11897 277 KDQADQFVKDTKEPAIILYL-DAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPI-LQAFKSHIAKVN-FLH 353 (363)
Q Consensus 277 ~~qa~~l~~~~~~~d~vi~L-~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i-~~~~~~~~~~v~-~~~ 353 (363)
+++...+......||++|+| ++|.+++.+|+..|. .|.+. ..+.+|+......+..- .+++...++.|| +..
T Consensus 113 ~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~---dr~E~--~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~ 187 (216)
T 3tmk_A 113 LDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD---ERYET--VKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNK 187 (216)
T ss_dssp HHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC---CTTCC--HHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTC
T ss_pred HHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc---ccccH--HHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCC
Confidence 44555555556679999999 999999998865332 34442 56777776655554332 222344689999 888
Q ss_pred cccccccC
Q psy11897 354 KRRESVKS 361 (363)
Q Consensus 354 ~~~~~~~~ 361 (363)
+.+++.++
T Consensus 188 s~eeV~~~ 195 (216)
T 3tmk_A 188 GIQEVEAL 195 (216)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 88887643
No 61
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.93 E-value=3.9e-10 Score=104.80 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=42.4
Q ss_pred CCCEEEEEeCCHHHHHHHHhhcCCCCCC--CCCcHHHHHHHHHHHHHH--hhHHHHHhh-hcceeecCccccccccc
Q psy11897 289 EPAIILYLDAPDDVILARLVKRGLTSGR--PDDKEDAIKKRLIKANEN--DGPILQAFK-SHIAKVNFLHKRRESVK 360 (363)
Q Consensus 289 ~~d~vi~L~~~de~l~~Rl~~R~~~~~r--~dd~~e~i~~Rl~~~~~~--~~~i~~~~~-~~~~~v~~~~~~~~~~~ 360 (363)
.||++|+|++|.+++.+|+.+|+....+ .++..+.+..+++.|.+. ..+....|. ..++.||++.+.+++++
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~ 250 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYE 250 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHH
Confidence 6999999999999999999988532111 111123333333333221 112112222 23778999988887754
No 62
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.91 E-value=3.3e-09 Score=93.49 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=44.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCc--HHHHHHHHHHHHHHhhHHHHHhh--hcceeecCccccccccc
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTSGRPDDK--EDAIKKRLIKANENDGPILQAFK--SHIAKVNFLHKRRESVK 360 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~--~e~i~~Rl~~~~~~~~~i~~~~~--~~~~~v~~~~~~~~~~~ 360 (363)
..+|++|+|++|.+++.+|+.+|+ |..+. .+.+.+|+..+.+. +.+.|. ...+.||++.+.+++++
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R~----r~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~ 192 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKRG----RSEELLIGEEYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIE 192 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHT----CHHHHHSCHHHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcC----ChhhhcCcHHHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHH
Confidence 468999999999999999998874 32111 02455666665544 345564 24778898887776654
No 63
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.90 E-value=1.6e-09 Score=94.72 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=33.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
+.|+|+|+|||||||+++.|+++++ +.+++.+++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg-~~~id~D~~~~~~ 40 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG-VGLLDTDVAIEQR 40 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT-CCEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-CCEEeCchHHHHH
Confidence 4699999999999999999999997 9999988875443
No 64
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.88 E-value=1.9e-09 Score=93.67 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=32.9
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRA 99 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~ 99 (363)
|++|+|+|+|||||||+++.|+++++ +.+++.+++++.
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~-~~~~d~d~~~~~ 41 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLD-LVFLDSDFLIEQ 41 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC-CCEEcccHHHHH
Confidence 34799999999999999999999997 999998877543
No 65
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.87 E-value=4.5e-09 Score=91.72 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=32.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccch
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr 98 (363)
..|+|+|+|||||||+++.|+++++ ..+++.+++++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~-~~~i~~d~~~~ 41 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK-RILYDSDKEIE 41 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC-CCEEEHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CCEEEChHHHH
Confidence 4689999999999999999999997 99999887744
No 66
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.86 E-value=2.2e-09 Score=92.15 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=32.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRA 99 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~ 99 (363)
|+|+|+|+|||||||+++.|+++++ +.+++.+++.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~~~~ 37 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLN-IPFYDVDEEVQK 37 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHT-CCEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CCEEECcHHHHH
Confidence 4689999999999999999999997 999998777433
No 67
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.85 E-value=8.3e-09 Score=95.90 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=49.8
Q ss_pred eeccCCCCChhhHhHHH---hcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHh--
Q psy11897 268 FLIDGYPRDKDQADQFV---KDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAF-- 342 (363)
Q Consensus 268 ~i~DGfPrt~~qa~~l~---~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~-- 342 (363)
+|+|+.+....+.+.|. +....++++|+|+||.+++.+|+..|. +. ...+.+.+....|. .|. ..|
T Consensus 75 vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~----~~-~~~~~l~~~~~~~e---~~~-~~~~~ 145 (260)
T 3a4m_A 75 VIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG----EK-IPNEVIKKMYEKFD---EPG-KKYKW 145 (260)
T ss_dssp EEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT----CS-SCHHHHHHHHHHCC---CTT-SSCGG
T ss_pred EEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC----CC-CCHHHHHHHHHHhc---Ccc-ccCCC
Confidence 56666555444444443 334568999999999999999999885 22 23455555444442 121 123
Q ss_pred hhcceeecCcc--cccccc
Q psy11897 343 KSHIAKVNFLH--KRRESV 359 (363)
Q Consensus 343 ~~~~~~v~~~~--~~~~~~ 359 (363)
....+.||++. +.++++
T Consensus 146 ~~~~~~Id~~~~~~~~ei~ 164 (260)
T 3a4m_A 146 DEPFLIIDTTKDIDFNEIA 164 (260)
T ss_dssp GCCSEEEETTSCCCHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHH
Confidence 33477888876 444443
No 68
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.84 E-value=2.1e-09 Score=96.51 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=33.8
Q ss_pred HhHHHhcCCCCCEEEEEeC-CHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCc
Q psy11897 280 ADQFVKDTKEPAIILYLDA-PDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFL 352 (363)
Q Consensus 280 a~~l~~~~~~~d~vi~L~~-~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~ 352 (363)
+..+.+....+ .+|++.+ +.+++.+||.+|+ .++++.+++||.....+.... ..| .++.+|.+
T Consensus 111 ~~~~~~~~~~~-~~i~i~~ps~~~l~~Rl~~R~------~~~~e~i~~Rl~~~~~e~~~~-~~~--d~vivN~~ 174 (208)
T 3tau_A 111 AMQVRKAMPEG-IFIFLTPPDLSELKNRIIGRG------TESMEVVEERMETAKKEIEMM-ASY--DYAVVNDV 174 (208)
T ss_dssp HHHHHHHCTTS-EEEEEECTTTTTSSCC-------------CCHHHHHHHHHHHHHHHHG-GGS--SEEEECSS
T ss_pred HHHHHHhCCCe-EEEEEeCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHhh-ccC--CEEEECcC
Confidence 33444444333 4455554 5899999999885 356689999999887654221 122 26667754
No 69
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.84 E-value=6.7e-09 Score=91.88 Aligned_cols=71 Identities=24% Similarity=0.213 Sum_probs=43.2
Q ss_pred eeccCCCCChhhHhHHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhc-c
Q psy11897 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH-I 346 (363)
Q Consensus 268 ~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~-~ 346 (363)
.+.|+.+....++ .+....+..++++.++.+++.+||..|. .++++.+++|+..+.... +++... +
T Consensus 100 vi~d~~~~~~~~~---~~~~~~~~~v~~~~~~~e~l~~Rl~~R~------~~~~~~i~~rl~~~~~~~----~~~~~~d~ 166 (205)
T 3tr0_A 100 VLLEIDWQGARQI---RELFPPALSIFILPPSIEALRERLIKRR------QDDTAIIEQRLALAREEM----AHYKEFDY 166 (205)
T ss_dssp EEEECCHHHHHHH---HHHCTTCEEEEEECSCHHHHHHHHHTCT------TSCSSTHHHHHHHHHHHH----TTGGGCSE
T ss_pred EEEEECHHHHHHH---HHhCCCcEEEEEECcCHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHH----hcccCCCE
Confidence 4455544444433 3333345556666667999999999885 345567889998885543 333322 5
Q ss_pred eeecC
Q psy11897 347 AKVNF 351 (363)
Q Consensus 347 ~~v~~ 351 (363)
+.+|.
T Consensus 167 vi~n~ 171 (205)
T 3tr0_A 167 LVVND 171 (205)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 56665
No 70
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.84 E-value=1.8e-08 Score=87.61 Aligned_cols=37 Identities=38% Similarity=0.482 Sum_probs=32.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRA 99 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~ 99 (363)
..|+|+|+|||||||+++.|+++++ ..+++.+++++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~-~~~~~~d~~~~~ 48 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG-LKYINVGDLARE 48 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC-CeEEEHHHHHhh
Confidence 4689999999999999999999997 999998876443
No 71
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.82 E-value=6.8e-09 Score=92.93 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 283 FVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 283 l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
+......||++|+|++|.++..+|..+| .|.++ . .+.+|+.... ..+.+.+.+.++.|||..+.+++.++
T Consensus 115 ~~~~~~~PDl~i~Ld~~~e~~~~R~~~~----dr~e~-~-ef~~rv~~~y---~~la~~~~~~~~~IDa~~~~eeV~~~ 184 (197)
T 3hjn_A 115 FATDGLIPDLTFYIDVDVETALKRKGEL----NRFEK-R-EFLERVREGY---LVLAREHPERIVVLDGKRSIEEIHRD 184 (197)
T ss_dssp HHHTTCCCSEEEEEECCHHHHHHHC-------CTTCC-H-HHHHHHHHHH---HHHHHHCTTTEEEEETTSCHHHHHHH
T ss_pred hhhcCCCCCceeecCcChHHHHHhCcCc----Ccccc-H-HHHHHHHHHH---HHHHHhCCCCEEEEcCCCCHHHHHHH
Confidence 3334457999999999999999985443 34333 2 4555543322 23444566678899999998887653
No 72
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.82 E-value=3.5e-09 Score=95.15 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=33.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
++.|+|+|++||||||+++.|++ +| +.+++.+++++....+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg-~~~id~D~~~~~~~~~ 44 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LG-INVIDADIIARQVVEP 44 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TT-CEEEEHHHHHHHTTST
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cC-CEEEEccHHHHHHhcC
Confidence 34689999999999999999988 86 9999988776654433
No 73
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.81 E-value=1.1e-08 Score=88.04 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=32.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRA 99 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~ 99 (363)
.-|+|+|+|||||||+++.|+++++ +.+++.+++++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg-~~~id~D~~~~~ 44 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK-LEVLDTDMIISE 44 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT-CCEEEHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-CCEEEChHHHHH
Confidence 3588999999999999999999997 999998877544
No 74
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.80 E-value=1.4e-08 Score=100.88 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=30.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.-|+|+|+|||||||+++.|++.++ +.+|+.+++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~-~~~i~~D~~ 292 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAG-YVHVNRDTL 292 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGT-CEECCGGGS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcC-cEEEccchH
Confidence 4588899999999999999999997 999997765
No 75
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.79 E-value=2e-09 Score=96.97 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=34.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEV 101 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i 101 (363)
+.|.|+|++||||||+++.|++.++ +.+++.|++++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g-~~~~d~g~i~~~~~ 44 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ-WHLLDSGAIYRVLA 44 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-CCcccCcceeehhh
Confidence 4689999999999999999999997 99999999877543
No 76
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.78 E-value=2.2e-09 Score=98.20 Aligned_cols=65 Identities=11% Similarity=0.022 Sum_probs=35.4
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcceeecCcccccccccC
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKS 361 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~~~v~~~~~~~~~~~~ 361 (363)
..||++|+|++|.+++.+|+ +| .|.+.....+.+|+...... +.+.|.+.++.||+..+.+++ ++
T Consensus 144 ~~PDl~I~Ldv~~e~~~~Ri-~r----dr~E~~~~e~~~rv~~~y~~---la~~~~~~~~vIDa~~sieeV-~~ 208 (223)
T 3ld9_A 144 VYPDITFIIDVDINESLSRS-CK----NGYEFADMEFYYRVRDGFYD---IAKKNPHRCHVITDKSETYDI-DD 208 (223)
T ss_dssp SCCSEEEEEECC---------------------CHHHHHHHHHHHHH---HHHHCTTTEEEEESSCSSSCC-CH
T ss_pred CCCCeEEEEeCCHHHHHHHh-cc----CccccchHHHHHHHHHHHHH---HHHHCCCCEEEEcCCCCHHHH-HH
Confidence 57999999999999999998 33 34333224566666554433 334455568999999999888 54
No 77
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.77 E-value=2.3e-08 Score=87.81 Aligned_cols=38 Identities=34% Similarity=0.509 Sum_probs=33.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH-CCCceEEecCccchh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK-FPEAIHISTGDLLRA 99 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~-~~~~~~is~gdllr~ 99 (363)
++.|+|+|+|||||||+++.|++. ++ +.+++++++++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g-~~~id~d~~~~~ 48 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDG-FQHLEVGKLVKE 48 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT-EEEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC-CEEeeHHHHHHH
Confidence 357999999999999999999999 76 999998887554
No 78
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.77 E-value=2.4e-08 Score=88.52 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=33.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVR 102 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~ 102 (363)
++|+|+|++||||||+++.|++ ++ +.+++.++.++....
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g-~~~i~~d~~~~~~~~ 40 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG-AYVLDADKLIHSFYR 40 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT-CEEEEHHHHHHGGGS
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC-CEEEEccHHHHHHhc
Confidence 4799999999999999999999 86 999998887665443
No 79
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.75 E-value=2.6e-08 Score=88.57 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=32.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVR 102 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~ 102 (363)
+.|.|+|++||||||+++.|++ +| ..+++.+++.+....
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg-~~~id~d~~~~~~~~ 41 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG-VPLVDADVVAREVVA 41 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT-CCEEEHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC-CcccchHHHHHHHcc
Confidence 3588999999999999999988 86 999998877555443
No 80
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.72 E-value=3.9e-08 Score=92.59 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=36.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTR 107 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~ 107 (363)
++.|+|+|+|||||||+|+.|+ ++| +.+|+++++.+....++...
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg-~~~id~D~~~~~~~~~~~~~ 119 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLG-AYIIDSDHLGHRAYAPGGPA 119 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHT-CEEEEHHHHHHHHTSTTSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCC-CcEEehhHHHHHHhcCChHH
Confidence 4579999999999999999999 576 99999988866555543333
No 81
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.71 E-value=3.2e-08 Score=85.83 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=22.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEE
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHI 91 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~i 91 (363)
++.|+|+|+|||||||+++.|+++++ ..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~-~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP-GSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST-TCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC-CCEE
Confidence 45689999999999999999999997 7666
No 82
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.67 E-value=6.1e-08 Score=86.26 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=32.2
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccch
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr 98 (363)
+..|.|+|+|||||||+++.|++.++++.+++.++++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~ 58 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK 58 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence 34688999999999999999999983389999887754
No 83
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.66 E-value=4.5e-08 Score=90.93 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=33.7
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
...|+|+|++||||||+++.|++.++ +.++..+++++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg-~~~~d~d~~~~~~ 86 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG-YTFFDCDTLIEQA 86 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT-CEEEEHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC-CcEEeCcHHHHHH
Confidence 34799999999999999999999997 9999988775543
No 84
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.66 E-value=8.6e-09 Score=91.65 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=30.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
..|+|+|++||||||+++.|++.+| .++++.+++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g-~~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETG-LEFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHC-CEEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC-CeEEccccc
Confidence 4688999999999999999999997 888886655
No 85
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.63 E-value=1.2e-07 Score=89.52 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=31.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccchhhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLLRAEV 101 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdllr~~i 101 (363)
+..|+|+|||||||||+++.|++.++ +.++||. |.++...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~-D~~R~~~ 73 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN-DTFKQQH 73 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT-HHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec-hHhHHhc
Confidence 45688999999999999999999982 2788884 4445443
No 86
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.62 E-value=1.4e-07 Score=81.52 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=30.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
+..|+|+|+|||||||+++.|++.+| .++++.+++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g-~~~i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH-AAFLDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT-CEEEEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC-cEEEeCccc
Confidence 34688999999999999999999997 999986665
No 87
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.60 E-value=5.1e-08 Score=90.08 Aligned_cols=42 Identities=29% Similarity=0.386 Sum_probs=31.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhh
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEV 101 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i 101 (363)
.+..|+|+|+|||||||+++.|++.++.-+++..+|.++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~ 72 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQH 72 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhc
Confidence 445789999999999999999999985223344466656554
No 88
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.60 E-value=4.9e-07 Score=83.27 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=33.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCce----------EEecCccch
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAI----------HISTGDLLR 98 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~----------~is~gdllr 98 (363)
.++.|.|.|+|||||||+|+.|++.++ +. +++.+++++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg-~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG-QNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT-GGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh-hhcccccCCceEEEecCcccc
Confidence 445789999999999999999999996 65 799998865
No 89
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.58 E-value=9.4e-08 Score=83.97 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=12.2
Q ss_pred hhHhHHHh-cCCCCCEEEEEeCCH-HHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy11897 278 DQADQFVK-DTKEPAIILYLDAPD-DVILARLVKRGLTSGRPDDKEDAIKKRLIKANEND 335 (363)
Q Consensus 278 ~qa~~l~~-~~~~~d~vi~L~~~d-e~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~ 335 (363)
+.++.+.+ ... ...+|++.+|+ +++.+||..|+ .++++.+++||.....+.
T Consensus 102 ~g~~~l~~~~~~-~~~~i~i~~p~~~~l~~Rl~~Rg------~~~~~~i~~rl~~~~~~~ 154 (186)
T 3a00_A 102 QGVKSVKAIPEL-NARFLFIAPPSVEDLKKRLEGRG------TETEESINKRLSAAQAEL 154 (186)
T ss_dssp HHHHHHHTCGGG-CCEEEEEECSCC-----------------------------------
T ss_pred HHHHHHHHhcCC-CeEEEEEECcCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHH
Confidence 44445544 232 34568888866 99999999886 456788999999887653
No 90
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.57 E-value=7.4e-08 Score=85.07 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..|+|+||+||||||+++.|++.+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468899999999999999999987
No 91
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.55 E-value=1.5e-07 Score=80.88 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=31.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccch
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr 98 (363)
..|+|+|+|||||||+++.|++.++ ..+++.+++++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~-~~~id~d~~~~ 40 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQEIE 40 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT-CEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CCEEeccHHHH
Confidence 4689999999999999999999997 88888766643
No 92
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.50 E-value=1.7e-07 Score=83.97 Aligned_cols=38 Identities=32% Similarity=0.478 Sum_probs=34.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
+.|+|+|++||||||+++.|++.+| +.+++.+++++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g-~~~~~~d~~~~~~ 41 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS-MIYVDTGAMYRAL 41 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT-CEEEEHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-CceecCChHHHHH
Confidence 4689999999999999999999997 9999999886653
No 93
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.46 E-value=4.8e-09 Score=93.47 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=44.0
Q ss_pred CCCEEEEEeCCHHHHHHHHhhcCCC-CCCCCCc---HHHHHHHHHHHHHHhhHHHHHhh-hcceeecCccccccccc
Q psy11897 289 EPAIILYLDAPDDVILARLVKRGLT-SGRPDDK---EDAIKKRLIKANENDGPILQAFK-SHIAKVNFLHKRRESVK 360 (363)
Q Consensus 289 ~~d~vi~L~~~de~l~~Rl~~R~~~-~~r~dd~---~e~i~~Rl~~~~~~~~~i~~~~~-~~~~~v~~~~~~~~~~~ 360 (363)
.||.+|+|++|.+++.+|+..|... .+|.++. .+.+.+|+....... .+.+. ..++.||++.+.+++.+
T Consensus 132 ~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~vId~~~~~~~v~~ 205 (214)
T 1gtv_A 132 KPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAEL---AAQGWGGRWLVVGADVDPGRLAA 205 (214)
T ss_dssp BCEEEEEEEEEHHHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHH---HHEEEEEEEEEEEEEEBHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHH---HHhCCCCCEEEEeCCCCHHHHHH
Confidence 6999999999999999999988521 1111121 245666665433222 22332 34678899888877654
No 94
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.43 E-value=4.3e-07 Score=79.83 Aligned_cols=39 Identities=26% Similarity=0.158 Sum_probs=33.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEV 101 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i 101 (363)
++.|+|+|++||||||+++.|++. | +.+++.+++++...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g-~~~id~d~~~~~~~ 46 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-G-YPVLDLDALAARAR 46 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-T-CCEEEHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-C-CEEEcccHHHHHhc
Confidence 457999999999999999999998 7 99999888765544
No 95
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.41 E-value=2.3e-07 Score=84.42 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=44.0
Q ss_pred cCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcH--HHHHHHHHHHHHHhhHHHHHh-hh--cceeecCccccccccc
Q psy11897 286 DTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKE--DAIKKRLIKANENDGPILQAF-KS--HIAKVNFLHKRRESVK 360 (363)
Q Consensus 286 ~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~--e~i~~Rl~~~~~~~~~i~~~~-~~--~~~~v~~~~~~~~~~~ 360 (363)
....||++|+|++|.+++.+|+.+|+ |.++.. ..+.+|+..+.+.+.. .+| .+ .++.||++.+.+++.+
T Consensus 143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~----r~~e~~~~~~~~~rv~~~~~~~~~--~~~~~~~~~~~vId~~~~~eev~~ 216 (230)
T 2vp4_A 143 IHVQADLIIYLRTSPEVAYERIRQRA----RSEESCVPLKYLQELHELHEDWLI--HQRRPQSCKVLVLDADLNLENIGT 216 (230)
T ss_dssp BCCCCSEEEEEECCHHHHHHHHHHHC----CGGGTTCCHHHHHHHHHHHHHHHT--SCCSSCCCEEEEEECCC-------
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHcC----CcccccCcHHHHHHHHHHHHHHHH--HhcccCCCCEEEEECCCCHHHHHH
Confidence 35579999999999999999999884 433321 2578888877766531 122 22 3688999999988876
Q ss_pred CC
Q psy11897 361 SP 362 (363)
Q Consensus 361 ~~ 362 (363)
++
T Consensus 217 ~I 218 (230)
T 2vp4_A 217 EY 218 (230)
T ss_dssp --
T ss_pred HH
Confidence 54
No 96
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.38 E-value=1e-06 Score=80.28 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=33.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRA 99 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~ 99 (363)
+..|+|+|++||||||+++.|++++| +.+++.|++++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg-~~~~d~d~~~~~ 53 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFG-FTYLDTGAMYRA 53 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHC-CEEEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-CceecCCCeeEc
Confidence 34789999999999999999999997 999999988654
No 97
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.32 E-value=4.9e-06 Score=75.48 Aligned_cols=72 Identities=24% Similarity=0.242 Sum_probs=43.3
Q ss_pred eeccCCCCChhhHhHHHhcCCCCCEEEEEeC-CHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHhhhcc
Q psy11897 268 FLIDGYPRDKDQADQFVKDTKEPAIILYLDA-PDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHI 346 (363)
Q Consensus 268 ~i~DGfPrt~~qa~~l~~~~~~~d~vi~L~~-~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~~~~~~ 346 (363)
.++|. +...++.+.+.+.. ..+|++-. +.+.+.+||.+|+ .++++.+.+|+.....+.... ..|. +
T Consensus 111 llLDL---D~~~~~~i~~~l~~-~~tI~i~th~~~~l~~Rl~~rG------~~~~e~i~~rl~~a~~e~~~~-~~~d--~ 177 (219)
T 1s96_A 111 VFLDI---DWQGAQQIRQKMPH-ARSIFILPPSKIELDRRLRGRG------QDSEEVIAKRMAQAVAEMSHY-AEYD--Y 177 (219)
T ss_dssp EEEEC---CHHHHHHHHHHCTT-CEEEEEECSSHHHHHHHHHTTS------CSCHHHHHHHHHHHHHHHTTG-GGSS--E
T ss_pred EEEEE---CHHHHHHHHHHccC-CEEEEEECCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHhhc-cCCC--E
Confidence 55552 33444444444432 34555544 6689999998886 567899999999877654321 1222 5
Q ss_pred eeecCc
Q psy11897 347 AKVNFL 352 (363)
Q Consensus 347 ~~v~~~ 352 (363)
+.+|.+
T Consensus 178 ~i~Nd~ 183 (219)
T 1s96_A 178 LIVNDD 183 (219)
T ss_dssp EEECSS
T ss_pred EEECcC
Confidence 566743
No 98
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.31 E-value=1.1e-06 Score=78.79 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=26.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTG 94 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~g 94 (363)
...|+|+||+||||||+++.|.+.+++.+..+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs 52 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVP 52 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeec
Confidence 3468899999999999999999998634444433
No 99
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.31 E-value=1.3e-07 Score=84.58 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..|+|+|+|||||||+++.|++.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999876
No 100
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7
Probab=98.31 E-value=2.6e-07 Score=86.60 Aligned_cols=124 Identities=15% Similarity=0.220 Sum_probs=79.4
Q ss_pred ceEEecCccchhhhhccCcchhHHHHHHHh-CC--c--cccccccCCCCCCCcc--chhhhhhhhcCCeEEECCeeEEee
Q psy11897 88 AIHISTGDLLRAEVRTGNTRGRNIEAIMKQ-GG--L--VPDVSYLSSNNPYFGS--TVGRVANRIAGGKFTIDKENFTIS 160 (363)
Q Consensus 88 ~~~is~gdllr~~i~~~~~~G~~l~~~~~~-g~--~--~~~~~y~~~~~~~~G~--~l~~~~nRI~~g~~~~~G~~y~L~ 160 (363)
.+.|+.+.+ ++.|.. .|+++.++... ++ + ..++.+|....+..|. ++.|+.||+.
T Consensus 23 ~~~l~~~~~-~a~i~~---~Ga~l~s~~~~~~g~e~Lw~~~~~~~~~~~~irGGiPvlfP~~gr~~-------------- 84 (270)
T 1jov_A 23 VLHLKHAVG-TAKISL---QGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVK-------------- 84 (270)
T ss_dssp EEEEEETTE-EEEEET---BTTEEEEEEETTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGGS--------------
T ss_pred EEEEeCCCc-EEEEEC---CCCEEEEEEECCCCceEEEECcHHhcCCCCCccCccEEEEeccCCCC--------------
Confidence 577777776 777775 78887776532 22 2 2445555555556665 7999999985
Q ss_pred cCCCCCccCCCCcCccccceEee-ee--CCeEEEEEeCCCCCCCCCceEEEEEEEEEccCCeEEEEEEEEeCCCeeeccc
Q psy11897 161 QNVDVNHLHGGFKGFDKVIWSTY-VD--KDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLT 237 (363)
Q Consensus 161 ~n~~~~~lHG~~~g~~~~~w~~~-~~--~~~vt~~~~~~~~~~g~P~~~~~~v~y~L~~~~~l~i~~~~~~~~~~p~~l~ 237 (363)
+..||+.+ ...|++. +. ++.+++.+...+.+ +.|+++++|+|. ..+.++++|.++ .|+++|
T Consensus 85 -----~~~HGfaR---~~~W~v~~~~~~~~~v~l~~~l~~~~----~~f~l~~~~~L~--l~~~~~v~N~g~--~p~~~g 148 (270)
T 1jov_A 85 -----QPAHGTAR---IRLWQLSHYYISVHKVRLEFELFSDL----NIIEAKVSMVFT--DKCHLTFTHYGE--ESAQAA 148 (270)
T ss_dssp -----SSTTBSGG---GSBCEEEEEEEETTEEEEEEEEECTT----SCEEEEEEEEES--SSEEEEEEECCS--SCEEEE
T ss_pred -----CCCCceec---CCCcEEeeeccCCCcEEEEEEECCCc----cccEEEEEEEEC--CeEEEEEEeCCc--hhHhhh
Confidence 25677653 3449954 32 66554444332221 348888999995 345555555554 579999
Q ss_pred cccccccC
Q psy11897 238 NHSYFNLA 245 (363)
Q Consensus 238 ~H~yFnl~ 245 (363)
+||||+++
T Consensus 149 ~HpyF~v~ 156 (270)
T 1jov_A 149 LHTYFNIG 156 (270)
T ss_dssp ECCEEECS
T ss_pred cccceecC
Confidence 99999985
No 101
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.29 E-value=2.2e-06 Score=78.17 Aligned_cols=69 Identities=22% Similarity=0.190 Sum_probs=43.5
Q ss_pred CCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHh-----hHH-HHHhh-hcceeecCcccccccc
Q psy11897 289 EPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANEND-----GPI-LQAFK-SHIAKVNFLHKRRESV 359 (363)
Q Consensus 289 ~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~-----~~i-~~~~~-~~~~~v~~~~~~~~~~ 359 (363)
.||++|+|++|.+++.+|+.+|+....+. . ...+.+|+....+.+ .|+ .++|. ..++.||++.+.+++.
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~-~-~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~ 224 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKG-I-ELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEV 224 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTT-C-CHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCccccc-C-CHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCH
Confidence 69999999999999999999885322111 1 134555665554443 121 11232 2478899988776653
No 102
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.28 E-value=3.9e-07 Score=82.46 Aligned_cols=50 Identities=22% Similarity=0.134 Sum_probs=37.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcchhHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIE 112 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G~~l~ 112 (363)
+--|-|+|.+||||||+++.|++ +| +..++++.+.+..+.+++..-..+.
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g-~~vidaD~ia~~l~~~~~~~~~~i~ 58 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RG-ASLVDTDLIAHRITAPAGLAMPAIE 58 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TT-CEEEEHHHHHHHHTSTTCTTHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CC-CcEEECcHHHHHHhcCCcHHHHHHH
Confidence 34678899999999999999988 87 9999988876666655433333333
No 103
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.22 E-value=3.8e-06 Score=72.33 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=26.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCC-ceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPE-AIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~-~~~is~gdl 96 (363)
.|+|+|+|||||||+++.|+++++. +++++.+++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 5889999999999999999999851 344555444
No 104
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.19 E-value=1.3e-06 Score=79.06 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=18.3
Q ss_pred CEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy11897 291 AIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANEND 335 (363)
Q Consensus 291 d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~ 335 (363)
..+++..++.+++.+||.+|. .++++.+++||+......
T Consensus 142 ~~v~v~~~~~~~l~~Rl~~R~------~~~~~~i~~rl~~~~~~~ 180 (231)
T 3lnc_A 142 VSIFIMPPSMEELRRRLCGRR------ADDSEVVEARLKGAAFEI 180 (231)
T ss_dssp EEEEEECSCHHHHHHC--------------------CHHHHHHHH
T ss_pred EEEEEECCcHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHH
Confidence 345566778899999998874 356778888988776543
No 105
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=98.12 E-value=8.9e-06 Score=77.13 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=58.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcch---------hHHHHHHHhCCccccccccCCC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRG---------RNIEAIMKQGGLVPDVSYLSSN 130 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G---------~~l~~~~~~g~~~~~~~y~~~~ 130 (363)
+..+|||+|| ||+|+.++|.+.+++.+..++... +.....++..| ..++..+.+|.+++.+.| .
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~T-TR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~---~ 171 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHT-TRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQY---N 171 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEE-CSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEE---T
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhChhhccccccCC-ccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEE---c
Confidence 4457999987 599999999999986677777765 44445555544 346666677777776665 3
Q ss_pred CCCCccchhhhhhhhcCCe
Q psy11897 131 NPYFGSTVGRVANRIAGGK 149 (363)
Q Consensus 131 ~~~~G~~l~~~~nRI~~g~ 149 (363)
..+||+.+..+...++.|+
T Consensus 172 gn~YGT~~~~V~~~~~~gk 190 (292)
T 3tvt_A 172 DNLYGTSVASVREVAEKGK 190 (292)
T ss_dssp TEEEEEEHHHHHHHHHHTC
T ss_pred cceeEEehHHHHHHHHcCC
Confidence 5677888777776666543
No 106
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.06 E-value=2.7e-05 Score=73.88 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=50.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcch---------hHHHHHHHhCCccccccccCCCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRG---------RNIEAIMKQGGLVPDVSYLSSNN 131 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G---------~~l~~~~~~g~~~~~~~y~~~~~ 131 (363)
+..|+|+|| ||+|++++|.+.++.-+..++... +....+++..| .+++..+.+|.+++...+ +.
T Consensus 105 ~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~T-TR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~---~g 177 (295)
T 1kjw_A 105 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHT-TRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQY---NS 177 (295)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCTTTEECCCCEE-CSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEE---TT
T ss_pred CCEEEEECC---CHHHHHHHHHhhCccceeeeeeec-ccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEE---cC
Confidence 357888987 799999999998864465665544 33334433333 345566666777665544 34
Q ss_pred CCCccchhhhhhhhcCC
Q psy11897 132 PYFGSTVGRVANRIAGG 148 (363)
Q Consensus 132 ~~~G~~l~~~~nRI~~g 148 (363)
.+||+....+...++.|
T Consensus 178 ~~YGt~~~~V~~~~~~G 194 (295)
T 1kjw_A 178 HLYGTSVQSVREVAEQG 194 (295)
T ss_dssp EEEEEEHHHHHHHHHTT
T ss_pred cEeeeeHHHHHHHHhcC
Confidence 56676666655555544
No 107
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.02 E-value=5.2e-06 Score=72.35 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
+..|+|+|+|||||||+++.|++.++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999998763
No 108
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.02 E-value=5e-05 Score=67.28 Aligned_cols=40 Identities=30% Similarity=0.402 Sum_probs=29.1
Q ss_pred CCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHh
Q psy11897 290 PAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANEND 335 (363)
Q Consensus 290 ~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~ 335 (363)
+.++++-+.+...+.+|+..|. .++++.+++||....+..
T Consensus 117 ~~~~~l~~p~~~ilde~~~~~d------~~~e~~i~~~l~~~~~~~ 156 (198)
T 1lvg_A 117 PIYIFVQPPSLDVLEQRLRLRN------TETEESLAKRLAAARTDM 156 (198)
T ss_dssp CEEEEEECSCHHHHHHHHHHHT------CSCHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHH
Confidence 4344444556788899998875 467899999998887653
No 109
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.98 E-value=6.6e-06 Score=71.22 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..|+|+|++||||||+++.|++.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999975
No 110
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.97 E-value=8e-06 Score=83.42 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=29.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDLLRAEV 101 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdllr~~i 101 (363)
.-|+|+|.|||||||++++|++.++ ....++.+++ +...
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~-r~~~ 78 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY-RREA 78 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH-HHHh
Confidence 3588899999999999999998863 1445676765 4444
No 111
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.84 E-value=5.2e-05 Score=67.40 Aligned_cols=40 Identities=30% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHH
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIK 330 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~ 330 (363)
...|.+|+++++.++.++|+..|....++ +.+.+.+|+..
T Consensus 146 ~~~d~~i~vd~~~~~~~~R~~~R~~~~g~---t~~~~~~~~~~ 185 (208)
T 3c8u_A 146 AIWDVSIRLEVPMADLEARLVQRWLDHGL---NHDAAVARAQG 185 (208)
T ss_dssp GTCSEEEEECCCHHHHHHHHHHHHHHTTC---CHHHHHHHHHT
T ss_pred HhcCEEEEEeCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHh
Confidence 34799999999999999999988432233 46677777764
No 112
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.80 E-value=0.0001 Score=65.64 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=31.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
-|.|.|++||||||+++.|++++| +..+. +++++..
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg-~~~~D-~~~~~~~ 43 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYN-IPLYS-KELLDEV 43 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT-CCEEC-HHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC-cCEEC-HHHHHHH
Confidence 488999999999999999999997 99998 8776553
No 113
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.79 E-value=4.9e-05 Score=73.29 Aligned_cols=51 Identities=10% Similarity=-0.080 Sum_probs=35.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQA 341 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i~~~ 341 (363)
..||++|+|++|.++.++|+.+|+....|. ...+.+|+......+..-..|
T Consensus 156 ~~PDLtIyLd~~pe~~l~RI~~RgR~~Eri---~~eyl~~vr~~Y~~l~~~~~~ 206 (334)
T 1p6x_A 156 PQGGNIVVTTLNVEEHIRRLRTRARIGEQI---DITLIATLRNVYFMLVNTCHF 206 (334)
T ss_dssp CTTEEEEEEECCHHHHHHHHHHHSCTTCCC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHhcCCCcccC---CHHHHHHHHHHHHHHHHHHHh
Confidence 359999999999999999998886433332 235666666655555444444
No 114
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.72 E-value=3.1e-05 Score=75.29 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=42.5
Q ss_pred eecceeeeccCCCCChhhHhHHHhcCCCCC-----EEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHH
Q psy11897 262 LAKAKLFLIDGYPRDKDQADQFVKDTKEPA-----IILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIK 330 (363)
Q Consensus 262 ~a~~~~~i~DGfPrt~~qa~~l~~~~~~~d-----~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~ 330 (363)
.......|+||.|--.++ ..|.......| ++|++++|.++.++|+..|....++. ++.+...+|+..
T Consensus 257 ~~~~~iVIvEGi~LL~e~-~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~-~s~eea~~r~~~ 328 (359)
T 2ga8_A 257 SKFTRIVILEGLYLLYDQ-ENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLV-TTIAEGREKFRS 328 (359)
T ss_dssp CTTCCEEEEEESSTTBCS-HHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSC-SSHHHHHHHHHH
T ss_pred cCCCCEEEEEeehhhccc-cchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCC-CCHHHHHHHHHh
Confidence 333456777886654443 12322111245 89999999999999999996433443 356777777763
No 115
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.72 E-value=0.00011 Score=66.71 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=33.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
+.|+|.|++||||||+++.|+++++ +..+. +++++.....
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg-~~~~d-~~~~~~~a~~ 54 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELG-IHFYD-DDILKLASEK 54 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT-CEEEC-HHHHHHHHHC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcC-CcEEc-HHHHHHHHHH
Confidence 3588999999999999999999997 88888 7776654444
No 116
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.69 E-value=1.6e-05 Score=73.02 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=34.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
++.|+|.|||||||||+++.|+++++ +.+++.|.+++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg-~~~~d~g~~~r~~ 47 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG-ARYLDTGAMYRIA 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CCcccCCcHHHHH
Confidence 35699999999999999999999997 9999999886554
No 117
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.68 E-value=1.8e-05 Score=70.25 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=35.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
..|.|+|++||||||+++.|++.+| +..|+++++++....+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg-~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYG-AHVVNVDRIGHEVLEE 53 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-CEEEECcHHHHHHHHH
Confidence 4688999999999999999999997 9999999886665543
No 118
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.66 E-value=0.00011 Score=76.35 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=28.2
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC---CCceEEec-Cccchh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF---PEAIHIST-GDLLRA 99 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~---~~~~~is~-gdllr~ 99 (363)
++.|+|+|.|||||||+++.|++.+ + +..+.+ ++.++.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G-~~~v~lDgD~iR~ 93 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHG-IPCYTLDGDNIRQ 93 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEESHHHHTT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEechHHhhh
Confidence 3469999999999999999999987 5 444333 344443
No 119
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.65 E-value=2.5e-05 Score=71.93 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=33.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
..|.|.||+||||||+++.|++++| +.++..|.++|+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg-~~~~d~g~i~r~~ 65 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN-WRLLDSGAIYRVL 65 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT-CEEEEHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC-CCcCCCCceehHh
Confidence 4699999999999999999999997 9999988875443
No 120
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.63 E-value=6.9e-05 Score=76.92 Aligned_cols=39 Identities=28% Similarity=0.443 Sum_probs=29.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCc-----eEEecCccchhhh
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEA-----IHISTGDLLRAEV 101 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~-----~~is~gdllr~~i 101 (363)
+..|+|+|+|||||||+++.|++.++ . ..++ +|.++..+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~-~~G~~~~~ld-~D~ir~~l 415 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ-ARGRKVTLLD-GDVVRTHL 415 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEC-HHHHHHHT
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh-hcCCeEEEEC-chHhhhhh
Confidence 45689999999999999999999874 3 4444 45445443
No 121
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.62 E-value=3.2e-05 Score=71.39 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=29.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.|+|+|||||||||+++.|+++++ ...++.+++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~-~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG-WPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC-CCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC-CeEEeccHH
Confidence 478899999999999999999997 888987765
No 122
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=97.60 E-value=0.00014 Score=70.00 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=30.4
Q ss_pred CCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy11897 289 EPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDG 336 (363)
Q Consensus 289 ~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~ 336 (363)
.+|+++++++|.++.++|+.+|+....|. ...+.+|+........
T Consensus 154 ppdlt~lldl~pe~~l~RI~~Rgr~~Eri---~~~yl~rvr~~Y~~l~ 198 (331)
T 1e2k_A 154 PGTNIVLGALPEDRHIDRLAKRQRPGERL---DLAMLAAIRRVYGLLA 198 (331)
T ss_dssp TTCEEEEEECCHHHHHHHHHHSCCTTCCC---CHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCHHHHHHHHHhcCCCcccC---CHHHHHHHHHHHHHHH
Confidence 46899999999999999999886433332 2345556555444333
No 123
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.54 E-value=3.2e-05 Score=67.97 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=32.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhh
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~ 100 (363)
.|.|.|++||||||+++.|++.++ +.+++.+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-~~~~d~d~~~~~~ 40 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-VPYLSSGLLYRAA 40 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-CCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-CceeccchHHHhh
Confidence 588899999999999999999997 9999988875544
No 124
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.52 E-value=0.00063 Score=72.01 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=50.2
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhccCcch---------hHHHHHHHhCCccccccccCCCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRG---------RNIEAIMKQGGLVPDVSYLSSNN 131 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~~~~~G---------~~l~~~~~~g~~~~~~~y~~~~~ 131 (363)
...|+|+|| ||+|++++|.+.+++-+..++... +.....++..| .+++..+.+|.+++...| +.
T Consensus 531 ~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~T-TR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~---~g 603 (721)
T 2xkx_A 531 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHT-TRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQY---NS 603 (721)
T ss_pred CCEEEEECC---CHHHHHHHHHHhCccceeeccccc-ccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEE---CC
Confidence 356888988 499999999998863355554433 33333333333 345556666777655444 45
Q ss_pred CCCccchhhhhhhhcCC
Q psy11897 132 PYFGSTVGRVANRIAGG 148 (363)
Q Consensus 132 ~~~G~~l~~~~nRI~~g 148 (363)
.+||..+..+...++.|
T Consensus 604 ~~YGt~~~~v~~~~~~g 620 (721)
T 2xkx_A 604 HLYGTSVQSVREVAEQG 620 (721)
T ss_pred ccceeeHHHHHHHHHCC
Confidence 67777777666666554
No 125
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=97.51 E-value=0.00027 Score=69.10 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.+.|+|.|+-||||||+++.|++.+.
T Consensus 49 ~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 49 LLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHC---
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34699999999999999999999874
No 126
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.44 E-value=0.0019 Score=57.87 Aligned_cols=39 Identities=26% Similarity=0.546 Sum_probs=29.3
Q ss_pred EEEEEe-CCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy11897 292 IILYLD-APDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDG 336 (363)
Q Consensus 292 ~vi~L~-~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~ 336 (363)
..++|. .+...+.+|+..|. .++++.+.+|+..+.++..
T Consensus 139 ~~~ll~~~~~~~Lde~~~~~d------~~~~~~i~~~l~~~~~~~~ 178 (218)
T 1z6g_A 139 LYIFIKPPSTDVLLSRLLTRN------TENQEQIQKRMEQLNIELH 178 (218)
T ss_dssp EEEEEECSCHHHHHHHHHHTC------CCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHH
Confidence 455554 67788999988775 4578899999988876554
No 127
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.36 E-value=0.00019 Score=72.06 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=27.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCcc
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDL 96 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdl 96 (363)
.+++|+|+|.|||||||++++|++.++ ....++.+++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~ 78 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 78 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchh
Confidence 345799999999999999999998753 1445554443
No 128
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.35 E-value=0.00065 Score=65.08 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=26.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC------CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP------EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~------~~~~is~gdl 96 (363)
.-|.|+||+||||||+++.|...+. .+..++.++.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3578899999999999999987753 2445665543
No 129
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=97.34 E-value=0.00029 Score=68.05 Aligned_cols=46 Identities=11% Similarity=-0.096 Sum_probs=28.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhh
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDG 336 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~ 336 (363)
..||++|+|+++.+++.+|+.+|+....|.+ ..+.+|+........
T Consensus 165 ~~PDltI~Ld~~pe~~l~RI~~RgR~~Erie---~~yl~rvr~~Y~~l~ 210 (341)
T 1osn_A 165 PPGTNLVVCTVSLPSHLSRVSKRARPGETVN---LPFVMVLRNVYIMLI 210 (341)
T ss_dssp CSCCEEEEEECCHHHHHHHCC------CCCC---HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCCcccCC---HHHHHHHHHHHHHHH
Confidence 3599999999999999999987753323322 356666655444333
No 130
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.29 E-value=0.00014 Score=63.06 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=26.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGD 95 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gd 95 (363)
+..|+|+|+|||||||+++.|+..++ +.++++.++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 34689999999999999999998753 134555443
No 131
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.23 E-value=0.00019 Score=66.00 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=36.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCccchhhhhc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT 103 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdllr~~i~~ 103 (363)
+.|.|+|++||||||+++.|.+.+| +.+++.|+-++.++..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g-~~~~~~~~~~~~~~~~ 42 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS-AVKYQLAGPIKDALAY 42 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC-EEECCTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-CeEEecChHHHHHHHH
Confidence 4688999999999999999999997 9999999887777765
No 132
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.18 E-value=0.00026 Score=67.92 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=30.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.|+|+||+||||||+++.|+++++ ...|+.++.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~-~~iis~Ds~ 39 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP-CELISVDSA 39 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC-EEEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CcEEeccch
Confidence 588999999999999999999997 899998765
No 133
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.12 E-value=0.00052 Score=70.78 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++.|+|+|.|||||||+++.|+++++
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 445789999999999999999999864
No 134
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.10 E-value=0.00037 Score=67.30 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=30.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.|+|+||+||||||+++.|++.++ ...|+.++.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~-~~iis~Ds~ 41 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN-GEIISGDSM 41 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT-EEEEECCSS
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC-Cceeccccc
Confidence 488999999999999999999997 888998876
No 135
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.07 E-value=0.00043 Score=60.06 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=25.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEec
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHIST 93 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~ 93 (363)
.++|+||+||||||+++.|++..++.+.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~ 34 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEG 34 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEEEEH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCeEEEcc
Confidence 4788999999999999999988753366653
No 136
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.04 E-value=0.0004 Score=66.95 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=29.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.|+|+||+||||||++..|+++++ ...||++..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~-~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP-LEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC-EEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC-CcEEccccc
Confidence 488999999999999999999997 888887755
No 137
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.03 E-value=0.00042 Score=60.09 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=22.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|+||+||||||+++.|+..++
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999874
No 138
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.01 E-value=0.00024 Score=63.61 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=33.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC--CceEEecCccchhhh
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP--EAIHISTGDLLRAEV 101 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~--~~~~is~gdllr~~i 101 (363)
+-|+|+|.|||||+|+++.+.+.++ ++..++++|-++++.
T Consensus 12 ~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~ 53 (202)
T 3ch4_B 12 LVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQY 53 (202)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHH
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHH
Confidence 4688899999999999999988774 377799999887533
No 139
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.86 E-value=0.0009 Score=63.83 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=29.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.|+|+||+||||||++..|+++++ ...||.+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 44 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILP-VELISVDSA 44 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC-EEEEECCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhCC-CcEEecccc
Confidence 578899999999999999999997 888887653
No 140
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp}
Probab=96.83 E-value=0.00088 Score=65.73 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=58.6
Q ss_pred CccCCCCcCccccc--eEeeee-CCeEEEEEeCCC-CCCCCCceEEEEEEEEEccCCeEEEEEEE--EeCCCeeeccccc
Q psy11897 166 NHLHGGFKGFDKVI--WSTYVD-KDKVVMSHMSPD-GDEGYPGAVIATTTFQLTSDNRLFITMEA--VSTKPTPINLTNH 239 (363)
Q Consensus 166 ~~lHG~~~g~~~~~--w~~~~~-~~~vt~~~~~~~-~~~g~P~~~~~~v~y~L~~~~~l~i~~~~--~~~~~~p~~l~~H 239 (363)
+.+||.......+. |++... ...++++..... ..-|||+.+..+++|++.+ +.+.|++++ .++.++|+.++.|
T Consensus 133 ~~LHG~~~~~pa~~~~~~~~~~~~~~i~l~g~~~~~~~~G~~~~l~~~i~~~l~~-~~l~i~~~VtN~g~~p~P~~~~~H 211 (384)
T 3ty1_A 133 YTLHGKAGNTPASLVEVEVADSAPYEIRIRGLVKESTFKKADLQTLTELRYVPGS-NSFSLHDVLTNHADYPHDYQIIYH 211 (384)
T ss_dssp ECTTCSGGGSCCSEEEEEEESSTTCCEEEEEEEEEEETTTEEEEEEEEEEECTTC-SEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccccccccCCCcceeEEEecCCCceEEEEEEEEEEeeeccCCEEEEEEEEEEeCC-CEEEEEEEEEECCCCCCchheecc
Confidence 47899988766555 765432 266777766643 4688999999999998864 566666665 4679999999999
Q ss_pred cccccC
Q psy11897 240 SYFNLA 245 (363)
Q Consensus 240 ~yFnl~ 245 (363)
++|..+
T Consensus 212 ~nfg~P 217 (384)
T 3ty1_A 212 SNFGTP 217 (384)
T ss_dssp EEECTT
T ss_pred cccCCC
Confidence 999754
No 141
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=96.82 E-value=0.00066 Score=64.44 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=42.2
Q ss_pred CCCCEEEEEeCCHHHHHHHHhhcCCCCCC-CCCcHHHHH--HHHHHHHHHhhHHHHHhh---hcceeecCcccc
Q psy11897 288 KEPAIILYLDAPDDVILARLVKRGLTSGR-PDDKEDAIK--KRLIKANENDGPILQAFK---SHIAKVNFLHKR 355 (363)
Q Consensus 288 ~~~d~vi~L~~~de~l~~Rl~~R~~~~~r-~dd~~e~i~--~Rl~~~~~~~~~i~~~~~---~~~~~v~~~~~~ 355 (363)
+.+++.++|++|.++-++|+..|.....+ -.-+...++ .+...|.+....++..-. .....|+++.+.
T Consensus 189 G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~ 262 (304)
T 3czq_A 189 GIHLFKFWINIGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKR 262 (304)
T ss_dssp TCEEEEEEEECCHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHH
T ss_pred CCeeEEEEEECCHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcc
Confidence 36999999999999999999887422111 011222333 344666665555554321 137789998765
No 142
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.81 E-value=0.00086 Score=64.08 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=29.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.|+|+||+||||||++..|+++++ ...||.+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 37 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN-GEVISGDSM 37 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT-EEEEECCGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc-cceeecCcc
Confidence 478899999999999999999997 888887754
No 143
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.80 E-value=0.00072 Score=59.57 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=28.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
+..|.|+|++||||||+++.|+..++ .+..++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 34688999999999999999999873 1556665544
No 144
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.79 E-value=0.00061 Score=59.90 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..|+|+|++||||||+++.|++.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999887
No 145
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.75 E-value=0.00064 Score=59.31 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
++++|+||+||||||+++.|+..++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998874
No 146
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.69 E-value=0.001 Score=62.45 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=27.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
+.-++|.||||+|||++++.|++.++ .++.++.+++
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 33456679999999999999999875 2566665555
No 147
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.66 E-value=0.00044 Score=65.10 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=27.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCccch
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDLLR 98 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdllr 98 (363)
.|.|.|++||||||+++.|++.++ .+..|+.+++.+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 488999999999999999999874 168899888754
No 148
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.48 E-value=0.0017 Score=59.07 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
..|.|+||+||||||+++.|+..+|
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999876
No 149
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.41 E-value=0.0015 Score=56.78 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=23.1
Q ss_pred CCCCCccccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 53 QTGIPLQVEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 53 ~~~~~~~~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|....+||+|+|.+|+||||++.+|....
T Consensus 16 ~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 16 FQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 344566667899999999999999999988643
No 150
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.39 E-value=0.0021 Score=58.55 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=28.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
+..++|.||||+||||+++.|+...+ .++.++..++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 34588999999999999999998874 2555665554
No 151
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.38 E-value=0.002 Score=63.62 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=28.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGD 95 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gd 95 (363)
.|+|+||+||||||++..|+++++ ...||++.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~-~~iis~Ds 35 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDS 35 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT-EEEEECCT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC-CeEeecCc
Confidence 478899999999999999999997 77888765
No 152
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0026 Score=63.37 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=28.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLL 97 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdll 97 (363)
+.-|+|.||||+|||++|+.++...+ .++.++.++++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 33588899999999999999999886 14445555553
No 153
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.33 E-value=0.0019 Score=56.83 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.7
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..|.|+|++||||||+++.|+..+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998754
No 154
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.33 E-value=0.0029 Score=58.89 Aligned_cols=34 Identities=35% Similarity=0.610 Sum_probs=27.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC---------CCceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF---------PEAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~---------~~~~~is~gdl 96 (363)
..++|.||||+||||+++.+++.+ + ++.++..++
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~-~~~~~~~~l 110 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGH-LVSVTRDDL 110 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCC-EEEECGGGT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCc-EEEEcHHHh
Confidence 358999999999999999888876 3 566665554
No 155
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.29 E-value=0.0015 Score=56.08 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|.|||||||||+++.|+..+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 358889999999999999987654
No 156
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0033 Score=61.94 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=27.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLL 97 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdll 97 (363)
.-++|.||||+|||++|+.++...+ .++.++..+++
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 3588899999999999999999886 13445555553
No 157
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.27 E-value=0.0027 Score=57.50 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=27.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
+..++|.||||+||||+++.+++.++ .++.++..++
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~ 75 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEF 75 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 34588999999999999999999875 1444555544
No 158
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.003 Score=62.78 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=26.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
++|.||||+|||++|+.++...+ .++.++.+++
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 88899999999999999999886 1344555544
No 159
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.24 E-value=0.0036 Score=57.57 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceE
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIH 90 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~ 90 (363)
..++|.||||+||||+++.+++.++ ...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~~-~~~ 79 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATETN-ATF 79 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHTT-CEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC-CCE
Confidence 3588999999999999999999986 443
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.22 E-value=0.0035 Score=58.30 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=25.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
++|.|||||||||+++.|+...+ +.+.++..++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l 80 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPEL 80 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHH
Confidence 88999999999999999999875 1344443333
No 161
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.19 E-value=0.003 Score=55.77 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=25.5
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
....++|+||+||||||+++.|+.-++ -+.+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~ 50 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFS 50 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST-TCEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEc
Confidence 344688999999999999999998875 34443
No 162
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.17 E-value=0.0043 Score=58.21 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=24.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
-++|.||||+||||+++.|+...+ ...+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~-~~~i~ 79 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQ-ANFIS 79 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT-CEEEE
T ss_pred eEEEECCCCcCHHHHHHHHHHHhC-CCEEE
Confidence 588899999999999999999986 54443
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.16 E-value=0.0025 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.|+||+||||+++.+++.+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999875
No 164
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.15 E-value=0.0025 Score=54.71 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=32.4
Q ss_pred HHHhcCCCCCEEEEEeCCHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHHhhHH
Q psy11897 282 QFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPI 338 (363)
Q Consensus 282 ~l~~~~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r~dd~~e~i~~Rl~~~~~~~~~i 338 (363)
.+...+...--+++||-|...+-.|...|.. + +-.++.+.+-.....+....+
T Consensus 93 ~iAral~~~p~~lllDEPt~~Ld~~~~~R~~---~-~~~~~vi~~~~~~l~~~l~~l 145 (171)
T 4gp7_A 93 EMAKDYHCFPVAVVFNLPEKVCQERNKNRTD---R-QVEEYVIRKHTQQMKKSIKGL 145 (171)
T ss_dssp HHHHHTTCEEEEEEECCCHHHHHHHHHTCSS---C-CCCHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHcCCcEEEEEEeCCHHHHHHHHhcccC---C-CCCHHHHHHHHHHhhhhhhhH
Confidence 4444443333579999999999989887752 2 334555655555555444444
No 165
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=96.14 E-value=0.039 Score=52.38 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=26.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTG 94 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~g 94 (363)
...+|||+|| ||+|+.++|.+.+++.+-.++.
T Consensus 144 ~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~ 175 (308)
T 3kfv_A 144 FKRPVVILGP---VADIAMQKLTAEMPDQFEIAET 175 (308)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEEECCC
T ss_pred CCCeEEEeCc---cHHHHHHHHHHhCccccccccc
Confidence 4457999999 7999999999999977777654
No 166
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.13 E-value=0.0036 Score=58.00 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=27.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCC-ceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPE-AIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~-~~~is~gdl 96 (363)
.-++|.||||+||||+++.+++.++. ++.++..++
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASL 90 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH
Confidence 35788999999999999999999851 344555544
No 167
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.09 E-value=0.0038 Score=56.68 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|.|||||||||+++.|+...+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998874
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.07 E-value=0.0041 Score=59.27 Aligned_cols=34 Identities=35% Similarity=0.599 Sum_probs=25.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
.++|.||||+||||+++.|+..++.-+....|..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 5889999999999999999998852223334443
No 169
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.04 E-value=0.0037 Score=53.72 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=22.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4579999999999999999988764
No 170
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0038 Score=62.54 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=27.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
+.-|+|.||||+|||++|+.|+...+ .++.++..++
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 33578899999999999999999886 1344555555
No 171
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.0033 Score=54.28 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.5
Q ss_pred cccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 59 QVEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 59 ~~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
...+||+|+|.+|+||||+..+|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3557999999999999999998854
No 172
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.99 E-value=0.0035 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+||+|+|++|+||||++.++....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998654
No 173
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.97 E-value=0.0062 Score=57.88 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=28.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC-C-CceEEecCccc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF-P-EAIHISTGDLL 97 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~-~-~~~~is~gdll 97 (363)
.-++|.||||+|||++++.++... + .++.++..+++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 358889999999999999999987 3 25566766664
No 174
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.94 E-value=0.0048 Score=52.87 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=21.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999988754
No 175
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0056 Score=60.82 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=27.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLL 97 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdll 97 (363)
-|+|.||||+|||++|+.|+...+ .++.++..+++
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 488899999999999999999886 14445555553
No 176
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.91 E-value=0.0043 Score=54.83 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=26.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdl 96 (363)
..++|.||||+||||+++.+++... .+..++..++
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3688999999999999999987642 2566665554
No 177
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.89 E-value=0.0067 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4569999999999999999988764
No 178
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.88 E-value=0.0053 Score=51.13 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=22.7
Q ss_pred ccccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 58 LQVEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 58 ~~~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
++..+||+|+|.+|+||||+..++...
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 345579999999999999999988653
No 179
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.88 E-value=0.0034 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.|+||+||||+++.+++.+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999875
No 180
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.88 E-value=0.0054 Score=57.89 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=33.7
Q ss_pred CCCEEEEEeCCHHHHHHHHhhcCC----CCCCC---------CCcHHHHHHHHHHH-HHHhhHHH
Q psy11897 289 EPAIILYLDAPDDVILARLVKRGL----TSGRP---------DDKEDAIKKRLIKA-NENDGPIL 339 (363)
Q Consensus 289 ~~d~vi~L~~~de~l~~Rl~~R~~----~~~r~---------dd~~e~i~~Rl~~~-~~~~~~i~ 339 (363)
..|++|++++|.++..+|+..|.. ...|. .-+++.+.+|+... .....|-.
T Consensus 214 ~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~ 278 (308)
T 1sq5_A 214 FVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNL 278 (308)
T ss_dssp GCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHH
T ss_pred hCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHH
Confidence 379999999999999999998831 11110 22567788887764 33334443
No 181
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.0053 Score=61.17 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=27.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLL 97 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdll 97 (363)
.-|+|.||||+|||++|+.|+...+ .++.++.++++
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 3588899999999999999999886 13445555553
No 182
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.88 E-value=0.0045 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999998754
No 183
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.0028 Score=54.56 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=23.3
Q ss_pred cccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 59 QVEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 59 ~~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
...+||+|+|.+|+||||++.+|....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 356799999999999999999988654
No 184
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.86 E-value=0.0065 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|+|||||||||+++.|+...+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcChHHHHHHHHHHHcC
Confidence 388999999999999999998874
No 185
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.83 E-value=0.0042 Score=58.44 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=27.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCCC------ceEE-ecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFPE------AIHI-STGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~~------~~~i-s~gdl 96 (363)
+..|.|.|++||||||+++.|++.++. ...+ +.++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 346889999999999999999887741 3445 66655
No 186
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.81 E-value=0.0053 Score=51.06 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|.|+||+|||++++.|.+..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999998764
No 187
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.81 E-value=0.0045 Score=55.39 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=18.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~ 82 (363)
--++|+||+||||||+++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 358889999999999999887
No 188
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.81 E-value=0.0047 Score=53.65 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.7
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+|++|+|++||||||+.++|...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999865
No 189
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.80 E-value=0.0063 Score=58.44 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=24.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEE
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHI 91 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~i 91 (363)
..++|.||||+|||++|+.|++.++ ...+
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~-~~~~ 80 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLD-VPFT 80 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT-CCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC-CCEE
Confidence 3688999999999999999999885 4443
No 190
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.78 E-value=0.006 Score=60.86 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=26.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEec
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHIST 93 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~ 93 (363)
..|+|.||||+||||+++.|++.++ ...+..
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~-~~~~~v 81 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLAN-APFIKV 81 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT-CCEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcC-CCceee
Confidence 3689999999999999999999996 555543
No 191
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.77 E-value=0.0048 Score=53.54 Aligned_cols=24 Identities=17% Similarity=0.118 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|.|++||||||++.+|++.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 357889999999999999998764
No 192
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.75 E-value=0.0048 Score=53.43 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=22.5
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
...+++|+|++||||||++++|....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34699999999999999999988654
No 193
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.74 E-value=0.0049 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
--++|+||+||||||+++.|+...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999998743
No 194
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.72 E-value=0.0042 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999764
No 195
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.71 E-value=0.0051 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=21.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.++...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3469999999999999999888764
No 196
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.71 E-value=0.0061 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.++...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999877654
No 197
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.71 E-value=0.0062 Score=56.27 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=27.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCC-ceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPE-AIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~-~~~is~gdl 96 (363)
..++|.||||+||||+++.+++.++. ++.++..++
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 46889999999999999999998751 344554443
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.70 E-value=0.0061 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|.|+||+||||+++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999998755
No 199
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.70 E-value=0.0059 Score=50.59 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|++||||||++.+|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3469999999999999999998764
No 200
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.68 E-value=0.0053 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+++|+|++||||||+++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68899999999999999998765
No 201
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.67 E-value=0.0075 Score=52.90 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=24.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC-CceEEecC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP-EAIHISTG 94 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~g 94 (363)
|+|+|++||||||+|++|+.. + ..++|.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 688999999999999999976 4 25566654
No 202
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.66 E-value=0.0075 Score=56.80 Aligned_cols=35 Identities=29% Similarity=0.251 Sum_probs=27.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC---C-CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF---P-EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~---~-~~~~is~gdl 96 (363)
..++|.||||+||||+++.++... + .++.++..++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 358899999999999999998754 1 2677776655
No 203
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.62 E-value=0.0077 Score=56.97 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=24.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEE
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHI 91 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~i 91 (363)
.-++|.||||+|||++++.+++..+ ...+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~-~~~~ 80 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEAN-STFF 80 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHT-CEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHC-CCEE
Confidence 3588999999999999999999885 4433
No 204
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.61 E-value=0.0066 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
..++|.||||+||||+++.+++..+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4688899999999999999999875
No 205
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=95.61 E-value=0.043 Score=55.01 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=24.2
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
....|||+||+|+| ++++|.+.+++.+..+
T Consensus 223 ~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~ 252 (468)
T 3shw_A 223 FLRPVTIFGPIADV---AREKLAREEPDIYQIA 252 (468)
T ss_dssp SCCCEEEESTTHHH---HHHHHHHHCTTTEEEC
T ss_pred CCCEEEEECCCHHH---HHHHHHHhCCCceeee
Confidence 44579999999999 9999999998665543
No 206
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.59 E-value=0.0067 Score=58.51 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=23.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
..+++|+|++||||||+++.|+..++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 44899999999999999999999886
No 207
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.58 E-value=0.0033 Score=57.40 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.||||+||||+++.|++..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 367799999999999999999874
No 208
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.56 E-value=0.006 Score=50.11 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+++|.+||||||++.++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999988764
No 209
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.55 E-value=0.009 Score=57.58 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=25.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCC-ceEEecC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPE-AIHISTG 94 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~-~~~is~g 94 (363)
..++|.||||+||||+++.|++.++. ++.++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 106 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDAT 106 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEecch
Confidence 36899999999999999999999851 3444433
No 210
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.55 E-value=0.0075 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||||+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999998864
No 211
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.53 E-value=0.0064 Score=54.33 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=25.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTG 94 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~g 94 (363)
..|+|+||+||||||++..|+++.+ ..|+.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~--~iIsdD 65 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH--RLIADD 65 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC--EEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC--eEEecc
Confidence 4689999999999999999999873 445533
No 212
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.53 E-value=0.0085 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.++|+|+|++|+||||+..+|...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 213
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.51 E-value=0.0072 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|.+||||||++.+|...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 59999999999999999999764
No 214
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.51 E-value=0.0065 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|.|+||+||||+++.+++.++
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 478899999999999999998764
No 215
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.51 E-value=0.0053 Score=62.34 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=24.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++.|+|+|.+||||||+++.|+++++
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 446799999999999999999999996
No 216
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=95.50 E-value=0.044 Score=53.63 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=23.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceE
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIH 90 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~ 90 (363)
.+..|||+||+| +|++++|.+.+++.+.
T Consensus 231 ~~r~iVlsGPsg---~tl~~~L~~~~p~~~~ 258 (391)
T 3tsz_A 231 FLRPVTIFGPIA---DVAREKLAREEPDIYQ 258 (391)
T ss_dssp SCCCEEEESTTH---HHHHHHHHHHCTTTEE
T ss_pred CCCEEEEECCCH---HHHHHHHHhhCccccc
Confidence 445799999998 8999999999985544
No 217
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.50 E-value=0.006 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|++|+||||+..++...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988763
No 218
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.49 E-value=0.0075 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|++|+||||+..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999888754
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.49 E-value=0.0047 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||+||||||+++.++..+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999998765
No 220
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.48 E-value=0.0072 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+|++||||||+++.|...+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 57889999999999999998764
No 221
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=95.47 E-value=0.006 Score=61.75 Aligned_cols=77 Identities=12% Similarity=0.021 Sum_probs=39.9
Q ss_pred hhhHhHHHhc---CCCCCEEEEEeCCHHHHHHHHhhcCCCCCC---C--CCcHHHHHHHHHHHHHHhhHHHHHhhh---c
Q psy11897 277 KDQADQFVKD---TKEPAIILYLDAPDDVILARLVKRGLTSGR---P--DDKEDAIKKRLIKANENDGPILQAFKS---H 345 (363)
Q Consensus 277 ~~qa~~l~~~---~~~~d~vi~L~~~de~l~~Rl~~R~~~~~r---~--dd~~e~i~~Rl~~~~~~~~~i~~~~~~---~ 345 (363)
++++..|+.. .+.+++.++|++|.++..+|+..|.....+ . .|- .-.++...|.+....++..-.. .
T Consensus 132 ~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~--~~~~~~~~Y~~a~e~~l~~T~t~~AP 209 (500)
T 3czp_A 132 IDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDW--KQSEVYDRFVHYGERVLRRTSRDYAP 209 (500)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------------CSSCT--TSHHHHHHHHHHHHHHHHHHCBTTBC
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHH--HHHHhHHHHHHHHHHHHHhhcCCCCC
Confidence 3445444333 345889999999999999999988642211 1 111 1123445555554444432111 2
Q ss_pred ceeecCcccc
Q psy11897 346 IAKVNFLHKR 355 (363)
Q Consensus 346 ~~~v~~~~~~ 355 (363)
...|+++.+.
T Consensus 210 W~vI~a~dk~ 219 (500)
T 3czp_A 210 WYVVEGADER 219 (500)
T ss_dssp EEEEECSCHH
T ss_pred EEEEECCCcc
Confidence 6788888755
No 222
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.47 E-value=0.0071 Score=49.89 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+||||||++.+|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999988754
No 223
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.46 E-value=0.0072 Score=57.41 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.7
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..+.|+|++||||||+++.|+..+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhc
Confidence 3468899999999999999998765
No 224
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.45 E-value=0.0065 Score=52.58 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+||+|+|.+|+||||+.+++..++
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 55799999999999999999877655
No 225
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.44 E-value=0.01 Score=50.47 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4579999999999999999999875
No 226
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.42 E-value=0.0096 Score=50.65 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+||||||++.+|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999988765
No 227
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.42 E-value=0.0083 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 4579999999999999999988754
No 228
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.42 E-value=0.0085 Score=50.24 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3469999999999999999988765
No 229
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.41 E-value=0.0079 Score=50.46 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|++|+||||+..++...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4469999999999999999998754
No 230
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.40 E-value=0.0081 Score=52.87 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-++|+|+|||||||+++.|+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999998843
No 231
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.40 E-value=0.0083 Score=49.76 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|++|+||||++.+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 468999999999999999988754
No 232
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.39 E-value=0.0095 Score=57.36 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=24.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEE
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHI 91 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~i 91 (363)
.-|+|.||||+||||+++.++..++ ...+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~-~~~~ 113 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN-STFF 113 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT-CEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC-CCEE
Confidence 3588999999999999999999886 4443
No 233
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.38 E-value=0.0088 Score=50.93 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.2
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
..+||+|+|.+|+||||+++.|...+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 446999999999999999988877664
No 234
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.37 E-value=0.0075 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.3
Q ss_pred cccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 59 QVEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 59 ~~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...+||+|+|.+|+||||++.+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34579999999999999999988754
No 235
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.36 E-value=0.0086 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
+||+|+|.+|+||||++.++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998864
No 236
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.36 E-value=0.0054 Score=53.38 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=21.7
Q ss_pred CccccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 57 PLQVEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 57 ~~~~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
++....+++|+|++||||||+.+.|..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 334456899999999999999987753
No 237
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.35 E-value=0.0089 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||+..+|...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 468999999999999999988753
No 238
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.35 E-value=0.0082 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.9
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|++||||||+..++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988754
No 239
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.34 E-value=0.0088 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+|+|+|++|+||||+..+|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998753
No 240
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.34 E-value=0.0066 Score=52.03 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=20.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999998877544
No 241
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.34 E-value=0.0092 Score=50.09 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|++||||||++.+|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3469999999999999999988764
No 242
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.34 E-value=0.012 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
..++|+||.||||||+++.|+..++
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3588999999999999999988764
No 243
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.33 E-value=0.0082 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~ 82 (363)
+||+|+|.+|+||||++.++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999998875
No 244
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.32 E-value=0.01 Score=50.30 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999998764
No 245
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.30 E-value=0.014 Score=56.14 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=27.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCC-ceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPE-AIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~-~~~is~gdl 96 (363)
..++|.||||+||||+++.|++..+. ++.++..++
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l 153 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence 35889999999999999999999851 334554444
No 246
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.29 E-value=0.0096 Score=50.94 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=21.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4569999999999999999988754
No 247
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.28 E-value=0.01 Score=49.81 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=21.2
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||++.+|...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 469999999999999999988754
No 248
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.28 E-value=0.0098 Score=49.17 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|.+|+||||+..+|...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988753
No 249
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.27 E-value=0.011 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||||+||||+++.|++..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 58899999999999999999875
No 250
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.26 E-value=0.0097 Score=49.43 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=21.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..++...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3469999999999999999988754
No 251
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.26 E-value=0.011 Score=48.87 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|.+|+||||++.++...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998754
No 252
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.26 E-value=0.0093 Score=49.46 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|++|+||||+..+|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 469999999999999999988754
No 253
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.26 E-value=0.015 Score=50.42 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.++...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4569999999999999999988764
No 254
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.26 E-value=0.0096 Score=52.16 Aligned_cols=34 Identities=21% Similarity=0.101 Sum_probs=24.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGD 95 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gd 95 (363)
.-++|.|+|||||||++..|+...+ .+..++..+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3578899999999999999975221 256666543
No 255
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.24 E-value=0.0089 Score=55.26 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-.++|+||+||||||+++.|+..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 368899999999999999988755
No 256
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.21 E-value=0.011 Score=51.39 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=21.6
Q ss_pred CccccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 57 PLQVEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 57 ~~~~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+....+||+|+|.+|+||||++.+|...
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 4445679999999999999999988753
No 257
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.20 E-value=0.0095 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+||+|+|.+|+||||+..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 58999999999999999988754
No 258
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.19 E-value=0.01 Score=50.40 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=21.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..||+|+|.||+||||+..+|...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.18 E-value=0.0085 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+--+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368899999999999999887544
No 260
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.18 E-value=0.011 Score=50.62 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=21.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...+|+|+|.+||||||+..+|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998754
No 261
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.17 E-value=0.011 Score=56.00 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||+||||||+++.|+.-+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 378999999999999999998765
No 262
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.17 E-value=0.011 Score=48.91 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.2
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||+..+|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999988753
No 263
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.17 E-value=0.01 Score=50.19 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.3
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+||+|+|.+|+||||++.++..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456999999999999999998874
No 264
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.16 E-value=0.013 Score=58.29 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=26.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC-C-CceEEecCccc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF-P-EAIHISTGDLL 97 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~-~-~~~~is~gdll 97 (363)
.-++|.||||+|||++++.++... + .++.++..+++
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 358889999999999999999987 3 14556666553
No 265
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.15 E-value=0.014 Score=55.01 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=22.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.||||+||||+++.+++..+
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999986
No 266
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.15 E-value=0.016 Score=52.77 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=27.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdl 96 (363)
..++|.|+||+|||++++.|++..+ .++.++.+++
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 3688999999999999999998753 1566665544
No 267
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.011 Score=49.09 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
.+||+|+|.+|+||||+..+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999998875
No 268
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.13 E-value=0.013 Score=59.09 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=27.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
.-++|.||||+||||+++.++...+ .++.++..++
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~ 85 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDF 85 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHH
Confidence 3488999999999999999998875 1455665555
No 269
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.013 Score=50.11 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=22.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|+|++||||||++.+|....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 270
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.12 E-value=0.011 Score=50.71 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..++...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4579999999999999999988764
No 271
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.10 E-value=0.014 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=20.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||.++++|+||||||+.|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4557888999999999999876433
No 272
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.10 E-value=0.0051 Score=53.34 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.+.|+|++||||||+++.|...+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999987763
No 273
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.10 E-value=0.014 Score=58.08 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=28.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC---CceEEecCccc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP---EAIHISTGDLL 97 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~---~~~~is~gdll 97 (363)
-++|.||||+||||+++.|++.++ .++.++..++.
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 488999999999999999999874 35666665553
No 274
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.09 E-value=0.0086 Score=53.77 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|.||||+||||.|..|++.+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998875
No 275
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.09 E-value=0.015 Score=56.82 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=40.0
Q ss_pred CCCCCEEEEEeCCHHHHHHHHhhcCCCCC-------CCCCcHHHHHHHHHHHHHHhhHHH
Q psy11897 287 TKEPAIILYLDAPDDVILARLVKRGLTSG-------RPDDKEDAIKKRLIKANENDGPIL 339 (363)
Q Consensus 287 ~~~~d~vi~L~~~de~l~~Rl~~R~~~~~-------r~dd~~e~i~~Rl~~~~~~~~~i~ 339 (363)
...||++++|++|.+++.+||..|+.+.. +.++..+.+++|+..+.+......
T Consensus 298 ~~~pDLliyLd~~~~~l~~RL~~Rg~t~~~~l~~~~~~~dy~~~l~~~~~~w~~~l~~~~ 357 (377)
T 1svm_A 298 RPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEF 357 (377)
T ss_dssp CCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHHHHHC
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHcCccHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34588999999999999999999974321 345666788888888877665443
No 276
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.011 Score=49.72 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+||+|+|.+|+||||++.+|....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 45799999999999999999887643
No 277
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.09 E-value=0.011 Score=51.81 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.++...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999998764
No 278
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.08 E-value=0.01 Score=49.68 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=20.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+||+|+|.+|+||||++.+|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 456999999999999999988754
No 279
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.08 E-value=0.012 Score=50.24 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999988764
No 280
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.08 E-value=0.011 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||.||||||+++.|+--.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987654
No 281
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.06 E-value=0.014 Score=49.94 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|++|+||||++.+|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4579999999999999999988754
No 282
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.06 E-value=0.012 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-++|+|+|||||||++..|+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5788999999999999999874
No 283
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.06 E-value=0.013 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3469999999999999999988754
No 284
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.05 E-value=0.0056 Score=50.88 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=25.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEecCc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHISTGD 95 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gd 95 (363)
..++|.|+||+|||++++.|....+.++.++..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~ 61 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGTPWVSPARVE 61 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhCCCeEEechhh
Confidence 3588999999999999998887653144444333
No 285
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.05 E-value=0.013 Score=49.39 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=21.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999988764
No 286
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.03 E-value=0.013 Score=51.34 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=22.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|+|++||||||++.+|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 287
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.03 E-value=0.011 Score=56.41 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=22.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.||||+||||+++.+++..+
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 588899999999999999998875
No 288
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.03 E-value=0.011 Score=50.59 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...||+|+|.+|+||||++.+|...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999988643
No 289
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.03 E-value=0.013 Score=49.11 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999988754
No 290
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.03 E-value=0.014 Score=50.38 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999988754
No 291
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.01 E-value=0.011 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+||||||++.+|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3569999999999999999988754
No 292
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.00 E-value=0.013 Score=48.91 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3469999999999999999998764
No 293
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.00 E-value=0.013 Score=50.50 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..++|+|+|.+||||||+..+|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3469999999999999999988754
No 294
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.00 E-value=0.018 Score=55.83 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=27.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCC-ceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPE-AIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~-~~~is~gdl 96 (363)
.-++|.||||+|||++++.++...+. ++.++..++
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 35889999999999999999999851 344555554
No 295
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.99 E-value=0.012 Score=49.59 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||++.+|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 469999999999999999988754
No 296
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.98 E-value=0.013 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||+..+|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999998754
No 297
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.96 E-value=0.01 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=19.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||.||||||+++.|+--+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999887543
No 298
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.95 E-value=0.014 Score=50.44 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.7
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4579999999999999999998764
No 299
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.014 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4579999999999999999988764
No 300
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.93 E-value=0.013 Score=48.98 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||++.+|...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999988743
No 301
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.89 E-value=0.019 Score=58.00 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEE
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHI 91 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~i 91 (363)
..++|.||||+||||+++.+++.++ ...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~-~~~i 106 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELG-YDIL 106 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT-CEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-CCEE
Confidence 3578899999999999999999985 4443
No 302
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.87 E-value=0.013 Score=50.50 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.2
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+||+|+|.+|+||||+..+|....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34699999999999999999887643
No 303
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.87 E-value=0.015 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=21.5
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3469999999999999999988753
No 304
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.85 E-value=0.013 Score=56.75 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.0
Q ss_pred cccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 59 QVEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 59 ~~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+.++||+|+|.+||||||++++|.=-+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999999999999999985443
No 305
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.84 E-value=0.016 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=22.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+|+|+|.+||||||++.+++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998763
No 306
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.82 E-value=0.016 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||+..++...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999988753
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.81 E-value=0.011 Score=52.71 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..++|+||.||||||+++.|+--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999988754
No 308
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.81 E-value=0.014 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
--++|+|+|||||||+++.|+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35888999999999999988754
No 309
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.80 E-value=0.013 Score=54.33 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998765
No 310
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.79 E-value=0.013 Score=53.24 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+.-+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999886543
No 311
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.75 E-value=0.015 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..++|+|+|++|+||||+...|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4569999999999999999998764
No 312
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.74 E-value=0.013 Score=54.69 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+--+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 368899999999999999887544
No 313
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.016 Score=49.88 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3469999999999999999988764
No 314
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.016 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3469999999999999999988764
No 315
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.73 E-value=0.013 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||.||||||+++.|+--+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999887544
No 316
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.73 E-value=0.015 Score=52.84 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.2
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|+|.||+||||+...|...-
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 34699999999999999999887643
No 317
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.70 E-value=0.017 Score=50.67 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=22.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+|+|+|.+||||||++.+|+...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998774
No 318
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.70 E-value=0.013 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~ 82 (363)
..+||+|+|.+|+||||+..++.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 44699999999999999988774
No 319
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.70 E-value=0.014 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+--+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999887544
No 320
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.69 E-value=0.012 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~ 82 (363)
..+||+|+|++||||||+..++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45699999999999999988775
No 321
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.67 E-value=0.015 Score=54.96 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||+||||||+++.|+..+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 468889999999999999998654
No 322
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.67 E-value=0.017 Score=49.26 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.5
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...||+|+|++|+||||+..++...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999988654
No 323
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.67 E-value=0.018 Score=51.28 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=24.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC----CCceEEecCc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF----PEAIHISTGD 95 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~----~~~~~is~gd 95 (363)
-++|+|+|||||||++.+++... +....++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 47889999999999988776431 1366677554
No 324
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.67 E-value=0.014 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+||.||||||+++.|+--+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368899999999999999887544
No 325
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.67 E-value=0.013 Score=55.20 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=22.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.||||+|||++++.+++.++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 588999999999999999999886
No 326
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.66 E-value=0.024 Score=56.51 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=22.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|.||||+||||+++.|++..+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 478999999999999999999986
No 327
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.66 E-value=0.017 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+.|+||.||||||+++.|+--
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988763
No 328
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.65 E-value=0.014 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||.||||||+++.|+--+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999887544
No 329
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.65 E-value=0.018 Score=49.65 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=20.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..||+|+|.+|+||||+..++...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998764
No 330
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.65 E-value=0.015 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.3
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.+|...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4579999999999999999988643
No 331
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.65 E-value=0.014 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+.-+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999887654
No 332
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.64 E-value=0.022 Score=57.64 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=26.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
-++|.||||+||||+++.|+...+ .++.++..++
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~ 100 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 100 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH
Confidence 488999999999999999998874 1445554444
No 333
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.018 Score=49.00 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||++.+|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999998764
No 334
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.63 E-value=0.018 Score=48.89 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+||+|+|.+|+||||+..++..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999998864
No 335
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.63 E-value=0.017 Score=49.84 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=20.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+||+|+|.+|+||||+..++..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 557999999999999999998864
No 336
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.63 E-value=0.015 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||.||||||+++.|+--+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999887544
No 337
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.62 E-value=0.011 Score=55.69 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=22.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.||||+|||++++.+++..+
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 489999999999999999999885
No 338
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.62 E-value=0.014 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||+..++...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 469999999999999999988764
No 339
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.018 Score=49.11 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||+..+|...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999854
No 340
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.60 E-value=0.016 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+.-+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999886544
No 341
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.57 E-value=0.019 Score=54.49 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
++|.||||+||||+++.+++.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999875
No 342
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.57 E-value=0.021 Score=60.96 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=25.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEEe
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHIS 92 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is 92 (363)
.-|+|.||||+|||++++.++...+ ...+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg-~~~~~ 268 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETG-AFFFL 268 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTT-CEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-CeEEE
Confidence 3488899999999999999999986 55444
No 343
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.55 E-value=0.016 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+.-+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999887654
No 344
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.55 E-value=0.02 Score=50.43 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.5
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||++.++...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 4569999999999999999988764
No 345
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.55 E-value=0.011 Score=60.65 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
....|+|+|++||||||+++.|+..++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 345689999999999999999998873
No 346
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.55 E-value=0.02 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
++|.||||+||||+++.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 347
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.54 E-value=0.016 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||.||||||+++.|+--+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 68899999999999999887544
No 348
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.51 E-value=0.018 Score=55.70 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
..++|+||+||||||+++.|...++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3789999999999999999988775
No 349
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.51 E-value=0.016 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+--+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999887654
No 350
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.51 E-value=0.018 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-+++.|+|||||||.+-+++.++
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999997676554
No 351
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.49 E-value=0.014 Score=59.06 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=24.3
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++-|+|.|..||||+|+.++|.+.++
T Consensus 299 ~~vlIvfEG~DaAGKg~~Ik~l~~~ld 325 (500)
T 3czp_A 299 HSLVAVFEGNDAAGKGGAIRRVTDALD 325 (500)
T ss_dssp CEEEEEEEESTTSCHHHHHHHHHTTSC
T ss_pred CCEEEEEeccCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999999985
No 352
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.49 E-value=0.018 Score=55.87 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+--.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58899999999999999988544
No 353
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.47 E-value=0.017 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+.-+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 368899999999999999887654
No 354
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.47 E-value=0.018 Score=55.12 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..++|+||+||||||+++.|+..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468889999999999999998654
No 355
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.47 E-value=0.011 Score=49.94 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=11.5
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+||+|+|.+|+||||++.++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999987764
No 356
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.45 E-value=0.017 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||.||||||+++.|+--+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999887544
No 357
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.45 E-value=0.018 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.-|+|+|++||||||.+..|+..+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Confidence 357889999999999999998654
No 358
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.44 E-value=0.018 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||||+||||+++.+++..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 58889999999999999998765
No 359
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.43 E-value=0.017 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||.||||||+++.|+--+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999887654
No 360
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.42 E-value=0.025 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..||+|+|.||+||||+..++....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCc
Confidence 4699999999999999999998654
No 361
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.39 E-value=0.021 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-.++|+||.||||||+++.|+--
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999988764
No 362
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.38 E-value=0.025 Score=48.36 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.++|+|+|.+|+||||+..+|...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 469999999999999999988763
No 363
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.37 E-value=0.023 Score=53.62 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..++|+|+.||||||+++.|+..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999998654
No 364
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.36 E-value=0.022 Score=49.32 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.8
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999988754
No 365
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.35 E-value=0.022 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||+..++...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998764
No 366
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.35 E-value=0.021 Score=55.38 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+--.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 58899999999999999998543
No 367
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.34 E-value=0.021 Score=55.28 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+--.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999988544
No 368
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.30 E-value=0.018 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.041 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+--+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368899999999999999887554
No 369
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.27 E-value=0.022 Score=55.70 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+--.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58899999999999999997544
No 370
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.27 E-value=0.027 Score=57.44 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=25.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP-EAIHISTGD 95 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gd 95 (363)
-++|+||||+||||+++.|+...+ ....++.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 478899999999999999998874 133444443
No 371
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.27 E-value=0.022 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
++|.||+|+||||+++.|+..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999853
No 372
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.25 E-value=0.019 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.|+||+||||+++.+++..+
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998875
No 373
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.25 E-value=0.025 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
...||+|+|.||+||||+..++..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346999999999999999998874
No 374
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.25 E-value=0.024 Score=48.90 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=20.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+||+|+|.+|+||||++.++..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 346999999999999999998854
No 375
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.25 E-value=0.022 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+--.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58899999999999999997544
No 376
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.24 E-value=0.025 Score=49.28 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.2
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||++.++...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 469999999999999999888754
No 377
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.24 E-value=0.021 Score=55.48 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+..+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999998765
No 378
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.22 E-value=0.02 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.-.++|+||.||||||+++.|+--
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999988643
No 379
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.21 E-value=0.023 Score=55.36 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+--.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999998543
No 380
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.21 E-value=0.023 Score=52.37 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
--++|+|+|||||||++..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588899999999999998874
No 381
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.21 E-value=0.02 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+.|+||.||||||+++.|+.-+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999887544
No 382
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.026 Score=48.24 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=22.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..++...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4569999999999999999998764
No 383
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.19 E-value=0.024 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
++|+|+|+|||||||+..+|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999754
No 384
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.18 E-value=0.024 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+--.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58899999999999999998543
No 385
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.17 E-value=0.04 Score=51.78 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=27.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC----CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP----EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~----~~~~is~gdl 96 (363)
..++|.|+||+|||++++.|.+... .++.++.+.+
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 4688999999999999999998531 1666765554
No 386
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.14 E-value=0.021 Score=49.57 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..||+|+|++|+||||+..++..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998753
No 387
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.14 E-value=0.026 Score=49.14 Aligned_cols=24 Identities=13% Similarity=0.028 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+||+|+|.+|+||||+..+|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 358999999999999999988764
No 388
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.13 E-value=0.026 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-++|.||||+||||+++.+++..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58889999999999999998854
No 389
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.11 E-value=0.026 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58899999999999999887654
No 390
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.11 E-value=0.023 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+.|+||.||||||+++.|+--+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999887544
No 391
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.15 E-value=0.009 Score=51.86 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=20.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+||+|+|.+|+||||+..++..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 457999999999999999987764
No 392
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.09 E-value=0.026 Score=49.53 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+||+|+|.+|+||||++.+|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346999999999999999998874
No 393
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.09 E-value=0.028 Score=53.83 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=20.7
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...+.|+|+|||||||+.+.|...
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 346889999999999999999854
No 394
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.06 E-value=0.028 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.614 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-++|.||||+||||+++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998876
No 395
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.05 E-value=0.029 Score=52.92 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..++|.||||+|||+++..|+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999988764
No 396
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.04 E-value=0.031 Score=49.59 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...||+|+|.+|+||||+..+|...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999988654
No 397
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.04 E-value=0.027 Score=51.10 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...+|+|+|.+||||||+..+|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999754
No 398
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=94.04 E-value=0.073 Score=51.00 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=25.3
Q ss_pred ccccEEEEcCCCCCHHH-------HHHHHHHHCCCceEEe
Q psy11897 60 VEIPTRFTGKPGTGKET-------QAQNILSKFPEAIHIS 92 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT-------~~~~L~~~~~~~~~is 92 (363)
-+.+|+|+||.+.|--+ +...|.++|++-++++
T Consensus 141 ~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t 180 (337)
T 4dey_A 141 SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 180 (337)
T ss_dssp SSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE
Confidence 34589999999999653 6778889998665554
No 399
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.02 E-value=0.029 Score=59.98 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCCCceEE
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFPEAIHI 91 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~~~~~i 91 (363)
..++|.|||||||||+++.|+...+ ...+
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~-~~~i 267 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETG-AFFF 267 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTT-CEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC-CcEE
Confidence 3589999999999999999999886 4433
No 400
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.99 E-value=0.03 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||||+||||+++.+++.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 38899999999999999999875
No 401
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.99 E-value=0.029 Score=48.98 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=24.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~gdl 96 (363)
=++|.|++|+||||++..|.++ | ...++ +|.
T Consensus 18 gvli~G~SGaGKStlal~L~~r-G-~~lva-DD~ 48 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR-G-HQLVC-DDV 48 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT-T-CEEEE-SSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHc-C-CeEec-CCE
Confidence 4788999999999999999885 4 55555 444
No 402
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.017 Score=55.10 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=21.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.-++|.||||+|||++++.+++.+
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998876
No 403
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.98 E-value=0.025 Score=53.17 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+|++||||||++..|+..+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999998544
No 404
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.95 E-value=0.024 Score=54.19 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|+||+||||||+++.|+..++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 688999999999999999987764
No 405
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.91 E-value=0.025 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
+..+|+|+|++|+||||+.+.|..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 446889999999999999999764
No 406
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.88 E-value=0.019 Score=55.36 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+--.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68899999999999999998544
No 407
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.88 E-value=0.031 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-++|.||||+||||+++.+++..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998853
No 408
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.87 E-value=0.031 Score=48.56 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=21.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..++...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999988754
No 409
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.87 E-value=0.048 Score=54.97 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=23.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEE
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHI 91 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~i 91 (363)
-++|.||||+|||++++.|+...+ ...+
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~-~~fv 267 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETG-AFFF 267 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-SEEE
T ss_pred cEEEECcCCCCHHHHHHHHHHHhC-CCEE
Confidence 488999999999999999999985 4443
No 410
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.033 Score=55.77 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+++|+||.||||||+++.|+.-+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3579999999999999999987654
No 411
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.82 E-value=0.033 Score=55.22 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=26.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC-----C-CceEEecCcc
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF-----P-EAIHISTGDL 96 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~-----~-~~~~is~gdl 96 (363)
..++|.||||+||||+++.++... + .++.++..++
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 468999999999999999998744 1 2566665554
No 412
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.80 E-value=0.03 Score=54.92 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCCHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..++|+||+||||||+++.|+-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4689999999999999998874
No 413
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.76 E-value=0.031 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
++|+|+|.|||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 48999999999999999999754
No 414
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.76 E-value=0.025 Score=48.23 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~ 82 (363)
..+||+|+|.+|+||||+..++.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34699999999999999998774
No 415
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.74 E-value=0.036 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||||+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38899999999999999999874
No 416
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.72 E-value=0.036 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...|.|+|+|||||||+...|...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999999864
No 417
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.71 E-value=0.034 Score=53.90 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=25.9
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC---CCceEEecCcc
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF---PEAIHISTGDL 96 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~---~~~~~is~gdl 96 (363)
+..++|+|+.||||||+++.|+..+ ++-+.+...|.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 3468899999999999999998654 22444444444
No 418
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.70 E-value=0.012 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=6.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4469999999999999999887654
No 419
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.69 E-value=0.052 Score=50.63 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=26.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCCCceEEecC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFPEAIHISTG 94 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~g 94 (363)
-++|.|++|+||||+++.+++..+ .++++..
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~~~~ 63 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERP-GILIDCR 63 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS-EEEEEHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHcC-cEEEEee
Confidence 377899999999999999999986 7777643
No 420
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.63 E-value=0.02 Score=54.25 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+||+||||||+++.|+.-+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 479999999999999999887655
No 421
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.62 E-value=0.028 Score=49.33 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=21.5
Q ss_pred ccccEEEEcCCCCCHHHHHHH-HHHHC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQN-ILSKF 85 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~-L~~~~ 85 (363)
..+||+|+|.+|+||||++.+ +...+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456999999999999999998 54444
No 422
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.61 E-value=0.05 Score=58.11 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=28.1
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCCCceEEecC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTG 94 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~~~~~is~g 94 (363)
.+..++|.||||+|||.+++.++...+ ...+++.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~-~~f~~v~ 543 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIK 543 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTT-CEEEECC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhC-CceEEec
Confidence 345689999999999999999999996 6666543
No 423
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.58 E-value=0.034 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-+.|+|+|||||||++..|+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999998775
No 424
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.039 Score=48.62 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+||+|+|.+|+||||+..+|...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4569999999999999999988764
No 425
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.57 E-value=0.035 Score=52.64 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|.||||+||||+++.+++..+
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 368899999999999999998875
No 426
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.55 E-value=0.035 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|+||+||||||+++.|...++
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 478899999999999999987663
No 427
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.53 E-value=0.037 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+.|+||+||||||+++.|+--.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58899999999999999887544
No 428
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.53 E-value=0.051 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
|+|.||||+|||+++..|+..++
T Consensus 107 ~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 107 IWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhhc
Confidence 88999999999999999999875
No 429
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.52 E-value=0.032 Score=52.40 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..++|+||.||||||+++.|+--+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368899999999999999887544
No 430
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.49 E-value=0.04 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-.+|+|+.||||||+++.|.--++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 478899999999999999877664
No 431
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.49 E-value=0.035 Score=59.38 Aligned_cols=37 Identities=32% Similarity=0.429 Sum_probs=28.1
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCccch
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDLLR 98 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdllr 98 (363)
..++|.||||+||||+++.|+...+ .++.++.++++.
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred ceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 3578899999999999999998764 245565555533
No 432
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.48 E-value=0.043 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
++|.||||+||||+++.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8899999999999999999874
No 433
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.45 E-value=0.036 Score=53.21 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+|+|+|+||+||||++..|+..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998653
No 434
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.44 E-value=0.021 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||+||||||+++.|+--.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999988543
No 435
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.42 E-value=0.03 Score=56.62 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=22.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.||||+|||++++.|+...+
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 689999999999999999998774
No 436
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.36 E-value=0.041 Score=55.63 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=26.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC---CCceEEecCccch
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF---PEAIHISTGDLLR 98 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~---~~~~~is~gdllr 98 (363)
+..|+|+|++||||||+++.|+..+ ++-+.+..++..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 3468889999999999999998654 2245554455433
No 437
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.30 E-value=0.04 Score=55.03 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=21.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||||+||||+++.|++.+
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999885
No 438
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.27 E-value=0.048 Score=52.17 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=22.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHH--CCCceEEec
Q psy11897 64 TRFTGKPGTGKETQAQNILSK--FPEAIHIST 93 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~--~~~~~~is~ 93 (363)
++|.||||+||||+|..++.. .. ...++.
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~-VlyIs~ 156 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGK-DKYATV 156 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTT-SCCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCC-EEEEEe
Confidence 678999999999999999864 33 455555
No 439
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.22 E-value=0.046 Score=50.69 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.++|+|+|.||+||||+..+|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999864
No 440
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.20 E-value=0.045 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=19.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-+++.|+|||||||.+-.++.++
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47779999999999988776655
No 441
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.17 E-value=0.028 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.1
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.++|+|+|.+||||||+..+|...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999988654
No 442
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.15 E-value=0.058 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 64 TRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
+++.||||+||||+++.+++.++
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHTT
T ss_pred EEeeCcCCCCHHHHHHHHHHHhC
Confidence 45566699999999999999985
No 443
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.10 E-value=0.06 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..+||+|+|.+|+||||+..+|..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCS
T ss_pred CcceEEEECCCCccHHHHHHHHhC
Confidence 456999999999999999887754
No 444
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.08 E-value=0.048 Score=52.47 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=24.9
Q ss_pred CccccccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 57 PLQVEIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 57 ~~~~~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
|+...-++.|+|++||||||+.+.|+....
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344445899999999999999999998774
No 445
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.08 E-value=0.064 Score=53.28 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=24.8
Q ss_pred CccccccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 57 PLQVEIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 57 ~~~~~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
|+...-++.|+||+||||||+++.|+....
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 344445899999999999999999998774
No 446
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.05 E-value=0.051 Score=52.56 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=25.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC----CCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF----PEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~----~~~~~is~gdl 96 (363)
-+.|.|||||||||+|..++... +.+..++....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 47789999999999999887642 22567776554
No 447
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.01 E-value=0.046 Score=55.42 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
-++|+||+||||||+++.|+...+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999987664
No 448
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.95 E-value=0.039 Score=54.84 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..|+|+|++||||||.+..|+..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999988543
No 449
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.90 E-value=0.055 Score=48.74 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..+++.|++||||||++..|+..
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 46788999999999999999853
No 450
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.90 E-value=0.05 Score=53.45 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=18.2
Q ss_pred cEEEEcCCCCCHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~ 82 (363)
-++|+|+|||||||++..|+
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 58889999999999999876
No 451
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.90 E-value=0.048 Score=54.29 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+..|+|+|++||||||.+..|+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH
Confidence 346888999999999999999864
No 452
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.90 E-value=0.054 Score=50.90 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+|++||||||+.+.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57889999999999999998 55
No 453
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.88 E-value=0.048 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+||+|+|.||+||||+..++...+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4699999999999999999987654
No 454
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.87 E-value=0.056 Score=55.74 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=22.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++|.||||+||||+++.|+...+
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCC
Confidence 688999999999999999998774
No 455
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.86 E-value=0.063 Score=47.67 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=23.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHH----H-CCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILS----K-FPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~----~-~~~~~~is~gdl 96 (363)
-++|.|+||+||||+|-.++. + -.....++...-
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 478899999999999977642 2 112566665543
No 456
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.84 E-value=0.023 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.9
Q ss_pred ccccEEEEcCCCCCHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~ 82 (363)
..+||+|+|.+|+||||+..+|.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCT
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45699999999999999888665
No 457
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.82 E-value=0.054 Score=53.53 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.2
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+|++|+|+||+||||+..+|....
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 4699999999999999999998654
No 458
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.80 E-value=0.056 Score=49.53 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.3
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.++|+|+|.||+||||+..+|...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999764
No 459
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=92.77 E-value=0.055 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=21.6
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+||+|+|..||||||++++|.--|
T Consensus 9 ~~k~lllG~~~sGKsT~~kq~~~~~ 33 (354)
T 2xtz_A 9 IRKLLLLGAGESGKSTIFKQIKLLF 33 (354)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeEEEECCCCCcHHHHHHHHHHHh
Confidence 4589999999999999999987544
No 460
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.75 E-value=0.057 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+|++||||||+++.|+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58899999999999999997543
No 461
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.73 E-value=0.049 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.5
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+..+|+|+|++||||||+.+.|...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCC
Confidence 4457899999999999999999754
No 462
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.67 E-value=0.075 Score=48.23 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=20.4
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
..++|++.|+||+||||.+-.++..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999997666643
No 463
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.62 E-value=0.07 Score=51.82 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
+++|.|+|.|||||||+...|...
T Consensus 1 ~~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 1 MLAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CCSEEEECCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999875
No 464
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=92.56 E-value=0.012 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.3
Q ss_pred ccccEEEEcCCCCCHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~ 82 (363)
..+||+|+|.+|+||||++.+|.
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSB
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 45799999999999999876553
No 465
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.55 E-value=0.053 Score=51.28 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-++|+|+.||||||+.+.|...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4778999999999999999864
No 466
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.55 E-value=0.061 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.+++|+|+||+||||+..+|...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999999854
No 467
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.54 E-value=0.061 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+|++||||||+.+.|+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57889999999999999886543
No 468
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.54 E-value=0.052 Score=53.81 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q psy11897 64 TRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~L~~~ 84 (363)
++|+|++||||||+.+.|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 889999999999999998754
No 469
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.50 E-value=0.067 Score=51.44 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=25.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC----CCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF----PEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~----~~~~~is~gdl 96 (363)
-+.|.|+|||||||+|..++... +.+..++....
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 47889999999999998887432 13677776654
No 470
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.47 E-value=0.062 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..|+|+|++||||||++..|+..+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999887654
No 471
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.34 E-value=0.078 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.||+|+|.+|+|||+++.++...
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCcCHHHHHHHHHhC
Confidence 59999999999999999988753
No 472
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=92.28 E-value=0.1 Score=47.41 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.9
Q ss_pred ccccEEEEcCC---------CCCHHHHHHHHHH
Q psy11897 60 VEIPTRFTGKP---------GTGKETQAQNILS 83 (363)
Q Consensus 60 ~~~~i~l~G~p---------GSGKtT~~~~L~~ 83 (363)
..+||+|+|.+ |+||||++.++..
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 45799999999 9999999999986
No 473
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.25 E-value=0.053 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..|+|+|+|||||||++..|+..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998764
No 474
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.15 E-value=0.069 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.0
Q ss_pred ccccEEEEcCCCCCHHHHHHHHH
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNIL 82 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~ 82 (363)
+..+|+|+|.+|+||||+...|.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHh
Confidence 44689999999999999998774
No 475
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.11 E-value=0.071 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
++|+|+|.|||||||+..+|...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999765
No 476
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.10 E-value=0.069 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.|+|||||||++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 68889999999999998887665
No 477
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.05 E-value=0.087 Score=48.43 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.4
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.++|+|+|.||+||||+...|...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCC
Confidence 458999999999999999999764
No 478
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.98 E-value=0.077 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.7
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
...|+|+|+||+||||++..|+..
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999999999754
No 479
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.98 E-value=0.082 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-++|.|+|||||||+|..++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999875
No 480
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.97 E-value=0.074 Score=56.23 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=21.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|.||||+||||+++.|++.+
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999885
No 481
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.92 E-value=0.078 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.+.|+|++||||||+.+.|..-.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999998643
No 482
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.92 E-value=0.12 Score=54.71 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=28.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC----CCceEEecCccc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF----PEAIHISTGDLL 97 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~----~~~~~is~gdll 97 (363)
.++|.||||+|||++++.|++.+ ..++.++.+++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 58899999999999999999874 127777776663
No 483
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.92 E-value=0.088 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-+.|.|+|||||||+|..++..
T Consensus 109 i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHHH
Confidence 4788999999999999999865
No 484
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.78 E-value=0.094 Score=48.89 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=24.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC-CceEEecC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP-EAIHISTG 94 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~g 94 (363)
-++|.|++|+||||+++.+++..+ ..++++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 377899999999999999988753 14555533
No 485
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.73 E-value=0.094 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.5
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
...++|+|+.||||||+++.|+-.+
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998644
No 486
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.62 E-value=0.11 Score=54.67 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=27.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHCC-CceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKFP-EAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~~-~~~~is~gdl 96 (363)
.++|.||||+|||++++.|++.++ .++.++.+++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 588999999999999999999875 1445665554
No 487
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.60 E-value=0.091 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
.++|+||.||||||+++.|+--+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcCC
Confidence 57889999999999999888654
No 488
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.57 E-value=0.089 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.4
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
..+.|+||+||||||+++.|+.-+
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998765
No 489
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.49 E-value=0.12 Score=50.70 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCccccccEEEEcCCCCCHHHHHHHHHHH
Q psy11897 56 IPLQVEIPTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 56 ~~~~~~~~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
.|+...-++.|+|++|+||||+++.|+..
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 34445568999999999999999888763
No 490
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.48 E-value=0.096 Score=49.22 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-++|.|+|||||||+|..++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999864
No 491
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.48 E-value=0.081 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.9
Q ss_pred ccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 62 IPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 62 ~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
.++.|+||+||||||+++.|+.-+.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhhccC
Confidence 4799999999999999999877653
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.48 E-value=0.091 Score=53.15 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHH--HH
Q psy11897 64 TRFTGKPGTGKETQAQN--IL 82 (363)
Q Consensus 64 i~l~G~pGSGKtT~~~~--L~ 82 (363)
++|+|++||||||+++. +.
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~ 62 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYN 62 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
No 493
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.46 E-value=0.1 Score=45.84 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=19.8
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 63 PTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
-+++.|++||||||.+-+++.++
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 46779999999999998888776
No 494
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.44 E-value=0.11 Score=43.37 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.3
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-.+|.||.||||||+.+.|.=.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999887643
No 495
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.41 E-value=0.052 Score=56.01 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.6
Q ss_pred ccccEEEEcCCCCCHHHHHHHHHHHCC
Q psy11897 60 VEIPTRFTGKPGTGKETQAQNILSKFP 86 (363)
Q Consensus 60 ~~~~i~l~G~pGSGKtT~~~~L~~~~~ 86 (363)
....++|.||||+|||++++.+++..+
T Consensus 326 ~~~~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 326 GDIHILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CSCCEEEEESSCCTHHHHHHSSSTTCS
T ss_pred CCcceEEECCCchHHHHHHHHHHHhCC
Confidence 334799999999999999999998875
No 496
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.39 E-value=0.075 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=20.8
Q ss_pred cccEEEEcCCCCCHHHHHHHHHHHC
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILSKF 85 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~~~ 85 (363)
+..|+++|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457789999999999999998554
No 497
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.34 E-value=0.096 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.4
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-++|+|++||||||+++.|...
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999988754
No 498
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.34 E-value=0.11 Score=50.02 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=25.6
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH-----CCCceEEecCcc
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK-----FPEAIHISTGDL 96 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~-----~~~~~~is~gdl 96 (363)
-++|.|+|||||||+|..++.. .. +..++....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~-vlyid~E~s 102 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKT-CAFIDAEHA 102 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCC-EEEEESSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEeCCCC
Confidence 4788999999999999888753 33 777887544
No 499
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=91.32 E-value=0.11 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.0
Q ss_pred cccEEEEcCCCCCHHHHHHHHHH
Q psy11897 61 EIPTRFTGKPGTGKETQAQNILS 83 (363)
Q Consensus 61 ~~~i~l~G~pGSGKtT~~~~L~~ 83 (363)
..++.|+|+|||||||+.+.|..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45899999999999999999987
No 500
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.31 E-value=0.093 Score=53.90 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHH
Q psy11897 63 PTRFTGKPGTGKETQAQNILSK 84 (363)
Q Consensus 63 ~i~l~G~pGSGKtT~~~~L~~~ 84 (363)
-++|.|+||+||||++..|...
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4778999999999999888764
Done!