RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11897
(363 letters)
>gnl|CDD|185696 cd09019, galactose_mutarotase_like, galactose mutarotase_like.
Galactose mutarotase catalyzes the conversion of
beta-D-galactose to alpha-D-galactose. Beta-D-galactose
is produced by the degradation of lactose, a
disaccharide composed of beta-D-glucose and
beta-D-galactose. This epimerization reaction is the
first step in the four-step Leloir pathway, which
converts galactose into metabolically important glucose.
This epimerization step is followed by the
phosophorylation of alpha-D-galactose by galactokinase,
an enzyme which can only act on the alpha anomer. A
glutamate and a histidine residue of the galactose
mutarotase have been shown to be critical for catalysis,
the glutamate serves as the active site base to initiate
the reaction by removing the proton from the C-1
hydroxyl group of the sugar substrate, and the histidine
as the active site acid to protonate the C-5 ring
oxygen. Galactose mutarotase is a member of the
aldose-1-epimerase superfamily.
Length = 326
Score = 196 bits (500), Expect = 4e-60
Identities = 69/120 (57%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 130 NNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWS-TYVDKDK 188
N+PYFG+TVGRVANRIA G+FT+D + + + N NHLHGG KGFDK +W V+++
Sbjct: 49 NSPYFGATVGRVANRIANGRFTLDGKTYQLEANEGPNHLHGGPKGFDKRVWDVEEVEENS 108
Query: 189 VVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLAGHD 248
V S +SPDG+EG+PG + T T+ LT DN L I EA + KPTP+NLTNHSYFNLAG
Sbjct: 109 VTFSLVSPDGEEGFPGNLTVTVTYTLTDDNELTIEYEATTDKPTPVNLTNHSYFNLAGEG 168
>gnl|CDD|182931 PRK11055, galM, galactose-1-epimerase; Provisional.
Length = 342
Score = 154 bits (392), Expect = 5e-44
Identities = 60/117 (51%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 133 YFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWS-TYVDKDKVVM 191
Y G++VGR ANRIA +FT+D E + +S N N LHGG +GFDK W + +V
Sbjct: 62 YLGASVGRYANRIANSRFTLDGETYQLSPNQGGNQLHGGPEGFDKRRWQIVNQNDRQVTF 121
Query: 192 SHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLAGHD 248
S SPDGD+G+PG + AT T++LT DNR+ IT A KP P+NLTNH+YFNL G +
Sbjct: 122 SLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRATVDKPCPVNLTNHAYFNLDGAE 178
>gnl|CDD|215098 PLN00194, PLN00194, aldose 1-epimerase; Provisional.
Length = 337
Score = 151 bits (384), Expect = 5e-43
Identities = 57/122 (46%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 132 PYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDK--- 188
PYFG+ VGRVANRI G KFT++ + + N N LHGG KGF KV+W K
Sbjct: 60 PYFGAIVGRVANRIKGAKFTLNGVTYKLPPNNGPNSLHGGPKGFSKVVWEVAKYKKGEKP 119
Query: 189 -VVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVS-TKPTPINLTNHSYFNLAG 246
+ + S DG+EG+PG + T T+ L S N L + MEA K TP+NL H+Y+NLAG
Sbjct: 120 SITFKYHSFDGEEGFPGDLSVTVTYTLLSSNTLRLDMEAKPLNKATPVNLAQHTYWNLAG 179
Query: 247 HD 248
H+
Sbjct: 180 HN 181
>gnl|CDD|233958 TIGR02636, galM_Leloir, galactose mutarotase. Members of this
protein family act as galactose mutarotase (D-galactose
1-epimerase) and participate in the Leloir pathway for
galactose/glucose interconversion. All members of the
seed alignment for this model are found in gene clusters
with other enzymes of the Leloir pathway. This enzyme
family belongs to the aldose 1-epimerase family,
described by Pfam model pfam01263. However, the enzyme
described as aldose 1-epimerase itself (EC 5.1.3.3) is
called broadly specific for D-glucose, L-arabinose,
D-xylose, D-galactose, maltose and lactose. The
restricted genome context for genes in this family
suggests members should act primarily on D-galactose.
Length = 336
Score = 141 bits (358), Expect = 3e-39
Identities = 61/124 (49%), Positives = 75/124 (60%), Gaps = 5/124 (4%)
Query: 129 SNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYV---- 184
+ Y G+TVGR ANRIA G F ID + + +S N N LHGG +GFDK W T
Sbjct: 52 KQDAYLGATVGRYANRIANGSFEIDGKTYQLSINQGPNCLHGGPEGFDKRRW-TIETLEQ 110
Query: 185 DKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNL 244
+ +V S SPDGD+G+PG + + T+ LT DN L I EA + K TP NLTNH YFNL
Sbjct: 111 AEVQVKFSLESPDGDQGFPGNLTVSVTYTLTDDNELKIDYEATTDKATPFNLTNHVYFNL 170
Query: 245 AGHD 248
G D
Sbjct: 171 DGAD 174
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase.
Length = 301
Score = 132 bits (333), Expect = 6e-36
Identities = 77/245 (31%), Positives = 112/245 (45%), Gaps = 24/245 (9%)
Query: 87 EAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLV------PDVSYLSSNNPYFGSTVGR 140
+ I ++ G+ L A + + G + ++ D + YFG+T+GR
Sbjct: 1 DLITLTNGNGLSATI---SLYGATLLSLKVPDKGEEVLLGSDDADGYLKDANYFGATLGR 57
Query: 141 VANRIAGGKFTIDKENFTISQNV-DVNHLHGGFKGFDKVIW--STYVDKDKVVMSHMS-P 196
ANRIA G+F +D + + + QN N LHGG +G IW D V +S + P
Sbjct: 58 YANRIANGRFELDGKPYQLPQNGPGKNPLHGGARG---RIWEVEEVKPDDGVTVSLVLDP 114
Query: 197 DGDEGYPGAVIATTTFQLTSDNRLFITMEAVST-KPTPINLTNHSYFNLAGHDIVREVL- 254
DG+EGYPG + T+ L DN L I EA + KPTP NL NH YFNL+GH I L
Sbjct: 115 DGEEGYPGDLEVRVTYTLNEDNELTIEYEATNDGKPTPFNLGNHPYFNLSGHTIDIHELQ 174
Query: 255 -----YKKMLQELAKA-KLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLV 308
Y ++ +L ++ + G P D Q +D + LD VI+
Sbjct: 175 IEADEYLEVDDDLIPTGEIKDVKGTPFDFRQPTPIGEDILGLDHVYVLDPLKAVIIDPDP 234
Query: 309 KRGLT 313
G+
Sbjct: 235 GSGIV 239
>gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes
[Carbohydrate transport and metabolism].
Length = 308
Score = 117 bits (294), Expect = 3e-30
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 87 EAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLV-----PDVSYLSSNNPYFGSTVGRV 141
+ + G + V G + ++ G + SY + Y G+ +G
Sbjct: 13 RLLTLGNGGGMVVTV---PDWGATLTSLRVNGRNLLLGFDDAESYPA-TRGYGGAILGPY 68
Query: 142 ANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDEG 201
ANRI+ G+FT+D + + + N N LHGG + FD +W D + S + DG++G
Sbjct: 69 ANRISNGRFTLDGKTYQLPPNEGGNALHGGARDFDWQVWEAEEDDNAEF-SLVLRDGEDG 127
Query: 202 YPGAVIATTTFQLTSDNRLFITMEAVST--KPTPINLTNHSYFNLAG 246
YPG + AT T+ L D L +T E + +PTP NL NH YFNL G
Sbjct: 128 YPGNLEATVTYTLNEDG-LTVTYEVTNDGDEPTPFNLGNHPYFNLPG 173
>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily.
Members of this family are adenylate kinase, EC 2.7.4.3.
This clade is found only in eukaryotes and includes
human adenylate kinase isozyme 1 (myokinase). Within the
adenylate kinase superfamily, this set appears
specifically closely related to a subfamily of
eukaryotic UMP-CMP kinases (TIGR01359), rather than to
the large clade of bacterial, archaeal, and eukaryotic
adenylate kinase family members in TIGR01351.
Length = 188
Score = 89.5 bits (222), Expect = 3e-21
Identities = 38/97 (39%), Positives = 58/97 (59%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARL 307
D V ++L M+ L +K FLIDGYPR+ Q ++F + P ++LY D +D ++ RL
Sbjct: 65 DTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRL 124
Query: 308 VKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKS 344
+KR TSGR DD E IKKRL + P++ +++
Sbjct: 125 LKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYET 161
Score = 67.5 bits (165), Expect = 3e-13
Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVP 122
G PG+GK TQ + I+ K+ H+STGDLLRAEV +G+ RG+ ++AIM+ G LVP
Sbjct: 10 GGPGSGKGTQCEKIVEKY-GFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVP 63
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for homeostasis of
adenosine phosphates.
Length = 194
Score = 79.6 bits (197), Expect = 1e-17
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 23/118 (19%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEPAIILYLDAPDDVIL 304
+IV ++L +++ + K F++DG+PR DQA D+ + + +P ++ LD PD+V++
Sbjct: 61 EIVIKLLKERLKKPDCKKG-FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLI 119
Query: 305 ARLVKRGLT-------------------SGRPDDKEDAIKKRLIKANENDGPILQAFK 343
R++ R + S R DD E+ IKKRL E P++ +K
Sbjct: 120 ERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYK 177
Score = 71.5 bits (176), Expect = 1e-14
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQA+ + K+ HISTGDLLR E+ +G G+ + + G LVPD
Sbjct: 6 GPPGSGKGTQAERLAKKY-GLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60
>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 75.2 bits (186), Expect = 8e-16
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 68 GKPGTGKETQAQNILSKFPEAI-HISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA+ I K+ I HISTGD+LRA V+ G G+ ++ M G LVPD
Sbjct: 7 GPPGAGKGTQAKFIAEKY--GIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPD 61
Score = 54.8 bits (133), Expect = 8e-09
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 36/112 (32%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAI----ILYLDAPDDVI 303
+V+E L + FL+DG+PR QA+ + KE I ++ +D PD+ +
Sbjct: 66 GLVKERL-----AQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEEL 120
Query: 304 LARLVKR---------------------------GLTSGRPDDKEDAIKKRL 328
+ RL R R DD E+ ++KRL
Sbjct: 121 VERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRL 172
>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase.
Length = 186
Score = 74.3 bits (183), Expect = 1e-15
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA+ I+ K+ H+STGDLLRAEV++G G+ + M +G LVPD
Sbjct: 3 GPPGAGKGTQAERIVQKY-GIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPD 57
Score = 66.9 bits (164), Expect = 3e-13
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 30/122 (24%)
Query: 254 LYKKMLQELAKAKLFLIDGYPRDKDQADQF---VKDTKEPAIILYLDAPDDVILARLVKR 310
L K+ L++ FL+DG+PR QA+ ++ + ++ D PD+V++ RL R
Sbjct: 63 LVKERLEQNDCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLTGR 122
Query: 311 GLT---------------------------SGRPDDKEDAIKKRLIKANENDGPILQAFK 343
+ S R DD E+ +KKRL ++ P++ +K
Sbjct: 123 RIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVIDYYK 182
Query: 344 SH 345
Sbjct: 183 KK 184
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily. Aldose
1-epimerases or mutarotases are key enzymes of
carbohydrate metabolism; they catalyze the
interconversion of the alpha- and beta-anomers of hexose
sugars such as glucose and galactose. This
interconversion is an important step that allows anomer
specific metabolic conversion of sugars. Studies of the
catalytic mechanism of the best known member of the
family, galactose mutarotase, have shown a glutamate and
a histidine residue to be critical for catalysis; the
glutamate serves as the active site base to initiate the
reaction by removing the proton from the C-1 hydroxyl
group of the sugar substrate and the histidine as the
active site acid to protonate the C-5 ring oxygen.
Length = 284
Score = 75.6 bits (186), Expect = 2e-15
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 125 SYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGF--KGFDKVIWST 182
Y + G+ + ANRI+ G++T D + + ++++ N +HG + V+ +
Sbjct: 32 EYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRNLPWR-VVATD 90
Query: 183 YVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVST--KPTPINLTNHS 240
++ V +S+ DG GYP + T T+ L + L IT + +P P L H
Sbjct: 91 -EEEASVTLSYDLNDGPGGYPFPLELTVTYTLD-ADTLTITFTVTNLGDEPMPFGLGWHP 148
Query: 241 YFNLAGHDI 249
YF L G I
Sbjct: 149 YFGLPGVAI 157
>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family. This subfamily
of the adenylate kinase superfamily contains examples of
UMP-CMP kinase, as well as others proteins with unknown
specificity, some currently designated adenylate kinase.
All known members are eukaryotic.
Length = 183
Score = 73.2 bits (180), Expect = 2e-15
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 254 LYKKMLQELAKAKLFLIDGYPRDKDQADQFVK--DTK-EPAIILYLDAPDDVILARLVKR 310
L K +Q +K FLIDG+PR+++ + + K D K +L+ D P++V++ RL+KR
Sbjct: 66 LLKNAIQA-DGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKR 124
Query: 311 GLTSGRPDDKEDAIKKRLIKANENDGPILQAFK 343
G +SGR DD ++IKKR NE P+++ ++
Sbjct: 125 GQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYE 157
Score = 58.1 bits (141), Expect = 4e-10
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVP 122
G PG+GK TQ I+ F H+S GDLLRAE+++G+ G IE+++K G +VP
Sbjct: 6 GGPGSGKGTQCAKIVENFG-FTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVP 59
>gnl|CDD|233369 TIGR01351, adk, adenylate kinase. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family are
known or believed to be adenylate kinase. However, some
members accept other nucleotide triphosphates as donors,
may be unable to use ATP, and may fail to complement
adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 210
Score = 72.3 bits (178), Expect = 7e-15
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQA+ I K+ HISTGDLLRAE++ G G+ + M++G LVPD
Sbjct: 4 LLGPPGSGKGTQAKRIAEKY-GLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60
Score = 62.6 bits (153), Expect = 2e-11
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 32/127 (25%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEPAIILYLDAPDDVIL 304
+IV +++ +++ Q F++DG+PR QA D +K+ ++ LD PD+ ++
Sbjct: 61 EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEK--IDAVIELDVPDEELV 118
Query: 305 ARLVKRGLTSG---------------------------RPDDKEDAIKKRLIKANENDGP 337
RL R + R DD E+ +KKRL E P
Sbjct: 119 ERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEP 178
Query: 338 ILQAFKS 344
++ +K
Sbjct: 179 LIDYYKK 185
>gnl|CDD|240435 PTZ00485, PTZ00485, aldolase 1-epimerase; Provisional.
Length = 376
Score = 66.6 bits (162), Expect = 4e-12
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 133 YFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDK---- 188
Y G+TVGR A R+AGG FT+D + +N N H G + K W + +
Sbjct: 67 YMGATVGRCAGRVAGGVFTLDGVKYYTQKNRGENTCHCGDDAYHKKHWGMKLIETANVIG 126
Query: 189 VVMSHMSPDGDEGYPGAVIATTTFQL--TSDNRL------FITMEAVSTKPTPINLTNHS 240
V ++ SP + G+PG +++ T+ + + N L +I E TP+N+ NH+
Sbjct: 127 VRFNYTSPHMENGFPGELVSKVTYSIERSKPNVLKTIYDSYIP-ETSPADATPVNIFNHA 185
Query: 241 YFNLAG 246
Y+NL G
Sbjct: 186 YWNLNG 191
>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional.
Length = 183
Score = 61.0 bits (148), Expect = 4e-11
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
F G PG GK TQA + + H+STGDLLR+EV G+ G+ EA+M +G LV D
Sbjct: 7 FLGPPGAGKGTQAARLCAAH-GLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSD 63
Score = 46.0 bits (109), Expect = 7e-06
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 268 FLIDGYPRDKDQA---DQFVKDTKEP--AIILYLDAPDDVILARLVKRGLTSGRPDDKED 322
+L+DG+PR QA + +++ K+P A++L L+ D V++ RL+ RG R DD E
Sbjct: 82 WLLDGFPRTVAQAEALEPLLEELKQPIEAVVL-LELDDAVLIERLLARG----RADDNEA 136
Query: 323 AIKKRLIKANENDGPILQAFK 343
I+ RL E P++ ++
Sbjct: 137 VIRNRLEVYREKTAPLIDHYR 157
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 60.8 bits (148), Expect = 5e-11
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK T A+ + K H+ TGD+LRA + G I+ + +G LVPD
Sbjct: 7 GPPGAGKSTLAKKLAKKLG-LPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPD 61
Score = 57.7 bits (140), Expect = 5e-10
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 254 LYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEPA-IILYLDAPDDVILARLVK 309
L K+ L E F++DG+PR QA + +K+ +++ LD P++++L RL+
Sbjct: 67 LVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLG 126
Query: 310 RGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHI 346
R R DD E+ +KKRL +E P+++ + I
Sbjct: 127 RR---VREDDNEETVKKRLKVYHEQTAPLIEYYSVTI 160
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 60.3 bits (146), Expect = 6e-10
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 67 TGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
+G P +GK TQ + I+ KF +HISTGDLLRAEV G G+ + M G LVPD
Sbjct: 3 SGAPASGKGTQCELIVHKF-GLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPD 58
Score = 57.6 bits (139), Expect = 4e-09
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 23/126 (18%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARL 307
+IV ++ ++ +E AK K +L+DGYPR QA K P I + LD PD++++ R
Sbjct: 59 EIVIAMVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRC 118
Query: 308 VKRGL--TSG---------------------RPDDKEDAIKKRLIKANENDGPILQAFKS 344
V R L +G RPDD E+ +K RL +N IL +
Sbjct: 119 VGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSD 178
Query: 345 HIAKVN 350
+ K++
Sbjct: 179 IMVKID 184
>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase.
Length = 261
Score = 57.5 bits (139), Expect = 2e-09
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
F G PG GK T A LSK HI+TGDL+R E+++ G ++ I+ QG LVPD
Sbjct: 34 FLGCPGVGKGTYASR-LSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPD 90
>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional.
Length = 186
Score = 55.8 bits (134), Expect = 2e-09
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 222 ITMEAVSTKPTPINLTNHSYFNLAGH---DIVREVLYKKMLQELAKAKLFLIDGYPRDKD 278
I EAV + T + + Y + AG D V + K ++E FL+DG+PR +
Sbjct: 35 ILREAVKNQ-TAMGIEAKRYMD-AGDLVPDSVVIGIIKDRIREADCKNGFLLDGFPRTVE 92
Query: 279 QADQFVKDTKEPAI----ILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANEN 334
QAD K + L+ PD +L RL+ R GR DD E IK RL N+
Sbjct: 93 QADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKK 152
Query: 335 DGPILQAFKS 344
P+L + +
Sbjct: 153 TLPLLDFYAA 162
Score = 48.9 bits (116), Expect = 7e-07
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
F G PG GK TQA+ + + ISTGD+LR V+ G + M G LVPD
Sbjct: 6 FMGPPGAGKGTQAKILCERL-SIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPD 62
>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional.
Length = 184
Score = 55.5 bits (134), Expect = 3e-09
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
F G PG GK TQA L++ HISTGD+LR ++ G + M +G LVPD
Sbjct: 6 FLGPPGAGKGTQAVV-LAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPD 62
Score = 49.4 bits (118), Expect = 4e-07
Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 15/130 (11%)
Query: 222 ITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAK----AKLFLIDGYPRDK 277
I +A+ + TP+ + Y + ++V + L ++QE + A +++DG+PR
Sbjct: 35 ILRQAIKEQ-TPLGIKAQGYMDKG--ELVPDQLVLDLVQERLQQPDAANGWILDGFPRKV 91
Query: 278 DQA---DQFVKDTKEPA-IILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANE 333
QA D+ +++ + ++ LD PDDV++ RL+ RG R DD E+ I++RL E
Sbjct: 92 TQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG----RKDDTEEVIRRRLEVYRE 147
Query: 334 NDGPILQAFK 343
P++ ++
Sbjct: 148 QTAPLIDYYR 157
>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 55.6 bits (134), Expect = 3e-09
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 245 AGHDIVREVLYKKMLQELA--KAKLFLIDGYPRDKDQA---DQFVKDTKEPAI-ILYLDA 298
AG + E++ + ELA + + DG+PR QA D+ +++ + ++ L+
Sbjct: 61 AGDLVPDELILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEV 120
Query: 299 PDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKS--HIAKVN 350
PD+ ++ R+V+R GR DD E+ +++R E P++ +++ H+ +V+
Sbjct: 121 PDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVD 174
Score = 50.9 bits (122), Expect = 1e-07
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
F G PG GK TQA+ L++ +STGD+LR V G G+ + IM+ G LVPD
Sbjct: 11 FLGPPGAGKGTQAER-LAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPD 67
>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional.
Length = 188
Score = 54.1 bits (130), Expect = 1e-08
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 243 NLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDT-KEPAIILYLDA 298
L +IV L ++ L E A + DG+PR QA D+ + ++ +++ L
Sbjct: 57 ELVSDEIVIA-LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKV 115
Query: 299 PDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPIL 339
D+ ++ R+VKR GRPDD + RL N P+L
Sbjct: 116 DDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLL 156
Score = 49.8 bits (119), Expect = 3e-07
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G P GK TQA+ ++ + + +STGD+LRA + +G+ G+ ++ IM +G LV D
Sbjct: 7 GPPAAGKGTQAKRLVEE-RGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSD 61
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 53.4 bits (128), Expect = 6e-08
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQAQ ++ ++ + +STGD+LRA V G G + IM GGLVPD
Sbjct: 7 GPPGAGKGTQAQRLVQQY-GIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPD 61
Score = 29.1 bits (65), Expect = 3.7
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 268 FLIDGYPRDKDQA---DQFVKDTKEPAIILYLDA------PDDVILARLVKRGLT----- 313
F++DG+PR QA D +KD + L LDA + +LAR+ R
Sbjct: 81 FILDGFPRTVPQAEALDALLKDKQ-----LKLDAVVELRVNEGALLARVETRVAEMRARG 135
Query: 314 -SGRPDDKEDAIKKRL 328
R DD + + KRL
Sbjct: 136 EEVRADDTPEVLAKRL 151
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 51.8 bits (124), Expect = 1e-07
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
F G PG+GK T A+ ILS HISTGDL R + G+ I+ I++ G LVPD
Sbjct: 5 FLGPPGSGKGTIAK-ILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPD 61
Score = 31.4 bits (71), Expect = 0.57
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 35/122 (28%)
Query: 259 LQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEPAIILYLDAPDDVILARLVKR----- 310
+ + F++DG+PR+ +QA D+F+ + K II +L +++++ RL R
Sbjct: 72 INTIKNNDNFILDGFPRNINQAKALDKFLPNIK---IINFL-IDEELLIKRLSGRRICKS 127
Query: 311 ----------------------GLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAK 348
G R DDKE+++K RL + P+++ F S +
Sbjct: 128 CNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIE-FYSKCNR 186
Query: 349 VN 350
+N
Sbjct: 187 LN 188
>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional.
Length = 229
Score = 50.6 bits (121), Expect = 3e-07
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK T A+ ILSK HI+ G++LR E++ T G+ I+ ++ G LVPD
Sbjct: 11 LFGAPGVGKGTFAE-ILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPD 67
Score = 36.7 bits (85), Expect = 0.009
Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 41/148 (27%)
Query: 243 NLAGHDIVREVLYKKMLQEL-AKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDD 301
NL ++V ++ ++ + K F++DG+PR+ Q + K T + + + P +
Sbjct: 63 NLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITN-IDLFVNIYLPRN 121
Query: 302 VILARLVKRGLTS-------------------------------------GRPDDKEDAI 324
+++ +L+ R + + R DD E+ +
Sbjct: 122 ILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIV 181
Query: 325 KKRLIKANENDGPILQAFKSHIAKVNFL 352
RL + PI+Q FK+ N +
Sbjct: 182 AHRLNTYESTNSPIIQFFKN--ENCNLV 207
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 50.3 bits (120), Expect = 4e-07
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 261 ELAKAKLFLIDGYPRDKDQADQFVKDTK-EPAIILYLDAPDDVILARLVKRGLTSGRPDD 319
E + FLIDG+PR ++ F + EP ++L+ D P++ ++ R++ R GR DD
Sbjct: 116 ESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNR--NQGRVDD 173
Query: 320 KEDAIKKRL 328
D IKKRL
Sbjct: 174 NIDTIKKRL 182
Score = 46.4 bits (110), Expect = 7e-06
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 51 PSQTGIPLQVEIP--TRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRG 108
+ G + + P T G PG+GK TQ + I+ F H+S GDLLR E+ + + G
Sbjct: 31 LEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFK-HLSAGDLLRREIASNSEHG 89
Query: 109 RNIEAIMKQGGLVP 122
I +K+G +VP
Sbjct: 90 AMILNTIKEGKIVP 103
>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional.
Length = 215
Score = 43.6 bits (103), Expect = 4e-05
Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 29/126 (23%)
Query: 248 DIVREVLYKKMLQE-LAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILAR 306
++V + + ++++E L+ A F++DGYPR+ +QA ++++ + ++LYLD ++ ++ R
Sbjct: 64 ELVPDAVVNEIVEEALSDADGFVLDGYPRNLEQA-EYLESITDLDVVLYLDVSEEELVDR 122
Query: 307 LVKR---------------------------GLTSGRPDDKEDAIKKRLIKANENDGPIL 339
L R G R DD E+ +++RL EN P++
Sbjct: 123 LTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVI 182
Query: 340 QAFKSH 345
+ ++
Sbjct: 183 EHYRDQ 188
Score = 40.9 bits (96), Expect = 3e-04
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRA----EVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQ+ N+ +F H++TGD LRA ++ +T M G LVPD
Sbjct: 10 GAPGAGKGTQSSNLAEEF-GVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPD 68
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 43.4 bits (103), Expect = 5e-05
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 251 REVLYKKMLQELAKAKLFLIDGY---------------PRDKDQADQFVKDTKEPAIILY 295
+ L + + L + K+ + D Y ++F +P + LY
Sbjct: 74 AQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLY 133
Query: 296 LDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKA 331
LD P +V L R+ KRG R + ++D +++ +
Sbjct: 134 LDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREG 169
>gnl|CDD|185699 cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to
Escherichia coli YihR. Proteins similar to Escherichia
coli YihR are uncharacterized members of
aldose-1-epimerase superfamily. Aldose 1-epimerases or
mutarotases are key enzymes of carbohydrate metabolism,
catalyzing the interconversion of the alpha- and
beta-anomers of hexose sugars such as glucose and
galactose. This interconversion is an important step
that allows anomer specific metabolic conversion of
sugars. Studies of the catalytic mechanism of the best
known member of the family, galactose mutarotase, have
shown a glutamate and a histidine residue to be critical
for catalysis; the glutamate serves as the active site
base to initiate the reaction by removing the proton
from the C-1 hydroxyl group of the sugar substrate, and
the histidine as the active site acid to protonate the
C-5 ring oxygen.
Length = 284
Score = 43.3 bits (103), Expect = 1e-04
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 18/116 (15%)
Query: 143 NRIAGGKFTIDKENFTISQNVDVNH------LHGGFKGFDKVIWST-YVDKDKVVMSHMS 195
NRIA G++T D + + +H G + W V +
Sbjct: 45 NRIADGRYTFDGV----EHQLPITEPERGNAIH-GLVRW--ADWQLVEHTDSSVTLRTRI 97
Query: 196 PDGDEGYPGAVIATTTFQLTSDNRLFITMEA--VSTKPTPINLTNHSYFNLAGHDI 249
P GYP + T T++L D+ L +T+ A V +P P + H Y + G +
Sbjct: 98 PPQ-PGYPFTLELTVTYEL-DDDGLTVTLTATNVGDEPAPFGVGFHPYLSAGGAPL 151
>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase.
Length = 244
Score = 40.3 bits (94), Expect = 9e-04
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQ+ I ++ H++TGD+LRA V G + M +G LV D
Sbjct: 36 LIGPPGSGKGTQSPIIKDEYC-LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 92
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 38.3 bits (90), Expect = 0.003
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 279 QADQFVKDTKEPAIILYLDAPD-DVILARLVKRGLTSGRPDDKEDAIKKRLIKANE 333
Q VK A+ +++ P + + RL RG D E+ I +RL A +
Sbjct: 103 QGALQVKKKMPNAVSIFILPPSLEELERRLKGRG------TDSEEVIARRLENAKK 152
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 35.4 bits (82), Expect = 0.013
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 247 HDIVREVLYKKMLQELAKAKL-FLIDGYPRDKDQADQFVK---DTKEPAIILYLDAPDDV 302
V + L ++ +E +A ++D +++ + + P I+YL+AP++V
Sbjct: 52 SGRVYQRL-LELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEV 110
Query: 303 ILARLVKRGLTSGRPDD 319
+ R +R + G P D
Sbjct: 111 LRERNAQRERSGGDPSD 127
Score = 28.4 bits (64), Expect = 3.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVR 102
G PG+GK T A+ +L + A+ +S+ D LR +R
Sbjct: 6 GLPGSGKSTFARRLLRE-LGAVVLSS-DTLRKRLR 38
>gnl|CDD|237918 PRK15172, PRK15172, putative aldose-1-epimerase; Provisional.
Length = 300
Score = 36.3 bits (84), Expect = 0.018
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 7/111 (6%)
Query: 143 NRIAGGKFTIDKENFTISQNVDVNH--LHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGDE 200
NRIA G + + + + N V+ +HG D I + + V ++ P
Sbjct: 64 NRIANGCYRYQGQEYQLPINEHVSKAAIHGLLAWRDWQI--SELTATSVTLTAFLPP-SY 120
Query: 201 GYPGAVIATTTFQLTSDN--RLFITMEAVSTKPTPINLTNHSYFNLAGHDI 249
GYP + + + L + + I + + P P + H Y +
Sbjct: 121 GYPFMLASQVIYSLDAATGLSVEIASQNIGDVPAPYGVGIHPYLTCNLTSV 171
>gnl|CDD|185698 cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to
Escherichia coli YphB. Proteins similar to Escherichia
coli YphB are uncharacterized members of the
aldose-1-epimerase superfamily. Aldose 1-epimerases or
mutarotases are key enzymes of carbohydrate metabolism,
catalyzing the interconversion of the alpha- and
beta-anomers of hexose sugars such as glucose and
galactose. This interconversion is an important step
that allows anomer specific metabolic conversion of
sugars. Studies of the catalytic mechanism of the best
known member of the family, galactose mutarotase, have
shown a glutamate and a histidine residue to be critical
for catalysis; the glutamate serves as the active site
base to initiate the reaction by removing the proton
from the C-1 hydroxyl group of the sugar substrate, and
the histidine as the active site acid to protonate the
C-5 ring oxygen.
Length = 273
Score = 35.3 bits (82), Expect = 0.033
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 142 ANRIAGGKFTIDKENFTISQNV--DVNHLHG-GFKGFDKVIWSTYVDKDKVVMSHMSPDG 198
+NRI GG+F + N + + LHG G++ +V+ ++ D +
Sbjct: 47 SNRIRGGRFLFAGREVALPPNTADEPHPLHGDGWRRPWQVVAAS---ADSAELQLDHEAD 103
Query: 199 DEGYPGAVIATTTFQLTSDNRLFITMEAV--STKPTPINLTNHSYFN 243
D + A F L + L IT+ +P P L H YF
Sbjct: 104 DPPWAYR--AEQRFHLA-GDGLSITLSVTNRGDRPMPAGLGFHPYFP 147
>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional.
Length = 223
Score = 33.9 bits (78), Expect = 0.076
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G G+GK TQ + K+ A HI +G + R + G G+ + + +G LVPD
Sbjct: 5 IFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDLVPD 61
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 34.1 bits (79), Expect = 0.077
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 294 LYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGP 337
++LDAP +V+ RLV R L G E A NDGP
Sbjct: 165 IFLDAPAEVLRERLVARKLAGGL--SPEAAEA----FVLRNDGP 202
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 33.4 bits (77), Expect = 0.10
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 265 AKLFLIDGYPRD------KDQADQFVKDTKEPAIILYLDAPDDVILARLVKRG 311
A+ L +G + D + + P +++YLDA + L R+ KRG
Sbjct: 94 AEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG 146
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 33.2 bits (77), Expect = 0.11
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 282 QFVKDTKEPAIILYLDAPDDVILARLVKRG 311
F P + LYLD P +V LAR+ RG
Sbjct: 120 DFALGGFRPDLTLYLDVPPEVGLARIRARG 149
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 32.0 bits (73), Expect = 0.18
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 256 KKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSG 315
+K+++ELA+ + +IDG+ A+ ++ K+ + L A + +L RL KRG +
Sbjct: 63 EKIIEELAEGENVIIDGHL-----AELELERFKDLVFV-VLRADPEELLERLKKRGYSEE 116
Query: 316 RPDDKEDA 323
+ + ++A
Sbjct: 117 KISENDEA 124
>gnl|CDD|234914 PRK01184, PRK01184, hypothetical protein; Provisional.
Length = 184
Score = 32.2 bits (74), Expect = 0.27
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 264 KAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDD 319
++ +IDG R + + F K+ E I++ + AP +V RL KR GR DD
Sbjct: 79 GDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKR----GRSDD 129
>gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K. Members of
this protein family are the stage V sporulation protein
K (SpoVK), a close homolog of the Rubisco expression
protein CbbX (TIGR02880) and a members of the ATPase
family associated with various cellular activities
(pfam00004). Members are strictly limited to bacterial
endospore-forming species, but are not universal in this
group and are missing from the Clostridium group
[Cellular processes, Sporulation and germination].
Length = 261
Score = 31.6 bits (72), Expect = 0.52
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100
F G PGTGK T A+ + F E +S G L+ E
Sbjct: 47 FKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE 81
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 31.1 bits (71), Expect = 0.61
Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 249 IVREVLYKKMLQ--ELAKAKLFLID-GYPRDKDQADQFVKDTKEPAIILYLDAPDDVILA 305
I+ ++ ++ + A++ +++ + F K ++ + AP ++ L
Sbjct: 87 ILHPLIRAEIKVVIDGARSPYVVLEIPLLFEAGGEKYFDK-------VIVVYAPPEIRLE 139
Query: 306 RLVKRGLTSGRPDDKEDA---------IKKRLIKAN---ENDGPILQAFKSHIAKVNFLH 353
RL+KR D+EDA ++++L A+ +NDG I + + L
Sbjct: 140 RLMKRD-----GLDEEDAEARLASQRDLEEKLALADVVIDNDGSIENLLEQIEKLLKELL 194
Query: 354 KRRES 358
Sbjct: 195 GLVLK 199
>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 194
Score = 30.8 bits (71), Expect = 0.65
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 44/129 (34%)
Query: 247 HDIVREVLYKKMLQELAKAKLFLID-------GYPRDKDQADQFVKDTKEPAIILYLDAP 299
H ++RE + ++ LQE + ++D G + D+ +L +DAP
Sbjct: 89 HPLIREEILEQ-LQEAESSPYVVLDIPLLFENGLEKLVDR-------------VLVVDAP 134
Query: 300 DDVILARLVKR-GLTSGRPDDKEDAIK---------KRLIKAN---ENDGPILQAFKSHI 346
+ L RL+ R GL+ +E+A ++L +A+ +N+G + +
Sbjct: 135 PETQLERLMARDGLS------EEEAEAIIASQMPREEKLARADDVIDNNGDLEEL----R 184
Query: 347 AKVNFLHKR 355
+V L +
Sbjct: 185 KQVERLLQE 193
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 31.1 bits (71), Expect = 0.66
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 21/91 (23%)
Query: 248 DIVREVLYKKMLQELAKAKLFLID----------GYPRDKDQAD-----QFVKDTKEPAI 292
V EV+ LA+ K+ L D G R +A +P +
Sbjct: 73 QHVEEVIKPA----LARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDL 128
Query: 293 ILYLDAPDDVILARLVKRGLTSGRPDDKEDA 323
+ LD +V LAR+ RG D++E
Sbjct: 129 TILLDIDPEVGLARIEARGR--DDRDEQEGL 157
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 30.0 bits (67), Expect = 0.84
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 67 TGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRG 108
TG PG+GK T A+ L++ IS DLLR E G
Sbjct: 5 TGPPGSGKSTLAK-KLAEKLGIPVISLDDLLREEGLAELDDG 45
Score = 27.6 bits (61), Expect = 4.9
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 249 IVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLV 308
+ L +++L ELAK + ++IDG +E ++++LD P RL+
Sbjct: 51 DIDLELLEEILDELAKQE-WVIDGVREST-----LELRLEEADLVVFLDLPLPACRFRLL 104
Query: 309 KRGLTSGRPD 318
KR L GR +
Sbjct: 105 KRRLQRGRGE 114
>gnl|CDD|238988 cd02030, NDUO42, NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is
a family of proteins that are highly similar to
deoxyribonucleoside kinases (dNK). Members of this
family have been identified as one of the subunits of
NADH:Ubiquinone oxioreductase (complex I), a
multi-protein complex located in the inner mitochondrial
membrane. The main function of the complex is to
transport electrons from NADH to ubiquinone, which is
accompanied by the translocation of protons from the
mitochondrial matrix to the inter membrane space.
Length = 219
Score = 30.8 bits (70), Expect = 0.92
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 290 PAIILYLDAPDDVILARLVKRG------LTSGRPDDKEDAIKKRLIKANENDGPILQ 340
P +++YLD P + R+ KRG +TS D E+A KK + +LQ
Sbjct: 143 PHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQ 199
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 30.3 bits (69), Expect = 1.1
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 67 TGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTR-GRNIEAIM--KQGGLVPD 123
TG PG GK T + ++ ++ + G EVR G R G +I + ++G
Sbjct: 5 TGPPGVGKTTLVKKVIELL-KSEGVKVGGFYTPEVREGGRRIGFDIVDLASGERG----- 58
Query: 124 VSYLSSNNPYFGSTVGR 140
+L+ G VG+
Sbjct: 59 --WLARVGGVSGPRVGK 73
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 29.8 bits (68), Expect = 1.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 284 VKDTKEPAIILYLDAPD-DVILARLVKRGLTSGRPDDKEDAIKKRLIKANE 333
VK A+ +++ P + + RL KRG D E+ I++RL KA +
Sbjct: 105 VKKKFPDAVSIFILPPSLEELERRLRKRG------TDSEEVIERRLAKAKK 149
>gnl|CDD|185746 cd08915, V_Alix_like, Protein-interacting V-domain of mammalian
Alix and related domains. This superfamily contains the
V-shaped (V) domain of mammalian Alix (apoptosis-linked
gene-2 interacting protein X), His-Domain type N23
protein tyrosine phosphatase (HD-PTP, also known as
PTPN23), Bro1 and Rim20 (also known as PalA) from
Saccharomyces cerevisiae, and related domains. Alix,
HD-PTP, Bro1, and Rim20 all interact with the ESCRT
(Endosomal Sorting Complexes Required for Transport)
system. Alix, also known as apoptosis-linked gene-2
interacting protein 1 (AIP1), participates in membrane
remodeling processes during the budding of enveloped
viruses, vesicle budding inside late endosomal
multivesicular bodies (MVBs), and the abscission
reactions of mammalian cell division. It also functions
in apoptosis. HD-PTP functions in cell migration and
endosomal trafficking, Bro1 in endosomal trafficking,
and Rim20 in the response to the external pH via the
Rim101 pathway. The Alix V-domain contains a binding
site, partially conserved in this superfamily, for the
retroviral late assembly (L) domain YPXnL motif. The
Alix V-domain is also a dimerization domain. Members of
this superfamily have an N-terminal Bro1-like domain,
which binds components of the ESCRT-III complex. The
Bro1-like domains of Alix and HD-PTP can also bind human
immunodeficiency virus type 1 (HIV-1) nucleocapsid. Many
members, including Alix, HD-PTP, and Bro1, also have a
proline-rich region (PRR), which binds multiple partners
in Alix, including Tsg101 (tumor susceptibility gene
101, a component of ESCRT-1) and the apoptotic protein
ALG-2. The C-terminal portion (V-domain and PRR) of Bro1
interacts with Doa4, a ubiquitin thiolesterase needed to
remove ubiquitin from MVB cargoes; it interacts with a
YPxL motif in Doa4s catalytic domain to stimulate its
deubiquitination activity. Rim20 may bind the ESCRT-III
subunit Snf7, bringing the protease Rim13 (a
YPxL-containing transcription factor) into proximity
with Rim101, and promoting the proteolytic activation of
Rim101. HD-PTP is encoded by the PTPN23 gene, a tumor
suppressor gene candidate often absent in human kidney,
breast, lung, and cervical tumors. HD-PTP has a
C-terminal catalytically inactive tyrosine phosphatase
domain.
Length = 342
Score = 30.0 bits (68), Expect = 1.8
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 312 LTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRES 358
L G + + I + ++ + + + +V+ L K RE
Sbjct: 165 LLCGGYKELKAFIPSPYPALDPEVSEVVSSLRPLLNEVSELEKERER 211
>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction
only].
Length = 168
Score = 29.0 bits (65), Expect = 2.5
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 252 EVLYKKMLQELAKAKLFLIDGY---PRDKDQADQFVKDTKEPAIILYLDAPDDVILARLV 308
++LYK++ Q L + K +ID D+ + K + D P ++ LAR
Sbjct: 56 DILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNK 115
Query: 309 KR 310
R
Sbjct: 116 LR 117
>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal. Members
of this protein are L-seryl-tRNA(Sec) kinase. This
enzyme is part of a two-step pathway in Eukaryota and
Archaea for performing selenocysteine biosynthesis by
changing serine misacylated on selenocysteine-tRNA to
selenocysteine. This enzyme performs the first step,
phosphorylation of the OH group of the serine side
chain. This family represents archaeal proteins with
this activity [Protein synthesis, tRNA aminoacylation].
Length = 249
Score = 28.2 bits (63), Expect = 5.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 285 KDTKEPAIILYLDAPDDVILARLVKRG 311
K+ + II+YL AP D +L R ++RG
Sbjct: 91 KEYNKNYIIIYLKAPLDTLLRRNIERG 117
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 28.1 bits (63), Expect = 5.5
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLR 98
G PG+GK T A+ L++ +S G + R
Sbjct: 7 GLPGSGKTTVAR-ELAEHLGLKLVSAGTIFR 36
>gnl|CDD|236471 PRK09344, PRK09344, phosphoenolpyruvate carboxykinase; Provisional.
Length = 526
Score = 28.6 bits (65), Expect = 5.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 252 EVLYKKMLQELAKAKLFLIDGY 273
+ L +K+L L+ LF++DG+
Sbjct: 88 DALKQKVLAYLSGKDLFVVDGF 109
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 27.9 bits (63), Expect = 6.1
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 288 KEPAIILYLDAPDDVILARLVKRGLTSGRP 317
E I+++LDA + +L RL + RP
Sbjct: 90 LENGIVVWLDASPEELLERLARDK---TRP 116
>gnl|CDD|147496 pfam05341, DUF708, Protein of unknown function (DUF708). This
family consists of several uncharacterized
nucleopolyhedrovirus proteins of unknown function.
Length = 105
Score = 26.8 bits (60), Expect = 6.5
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 317 PDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLH 353
P+D+E A K LI P +++++ K N +
Sbjct: 16 PEDRELAWK-DLIILVLRTTP-QSTYRTNLRKANLEN 50
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 28.5 bits (64), Expect = 6.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 229 TKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKA-----KLFLIDGYPRDKDQA 280
+P I+ + S+F+L GH I L +M+ EL K L LI P K A
Sbjct: 863 NRPATISP-DDSFFDLGGHSI----LATRMIFELRKKLNVELPLGLIFKSPTIKGFA 914
>gnl|CDD|237854 PRK14898, PRK14898, DNA-directed RNA polymerase subunit A'';
Provisional.
Length = 858
Score = 28.3 bits (63), Expect = 8.0
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 267 LFLIDGYPRDKDQADQFVKD---------TKEPAIILYLDAPD-DVILARLVKRGLTSGR 316
+ L Y D+++A++ K AI L+ + ++ L RGLT
Sbjct: 582 VHLKGEYATDREKAEEVAKKIESLTLGDVATSIAIDLWTQSIKVELDEETLADRGLTI-- 639
Query: 317 PDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVK 360
+ E+AI+K+L + G +L K L KR +K
Sbjct: 640 -ESVEEAIEKKLGVKIDRKGTVLY-LKPKTPSYKALRKRIPKIK 681
>gnl|CDD|185362 PRK15465, pabB, aminodeoxychorismate synthase subunit I;
Provisional.
Length = 453
Score = 28.0 bits (62), Expect = 8.6
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 50 DPSQTGIPLQVEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRG 108
D + + V++P F +P I ++ PE +H S DLLRA G+ G
Sbjct: 313 DIGRVAVAGSVKVPELFVVEPFPAVHHLVSTITARLPEQLHAS--DLLRAAFPGGSITG 369
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 27.5 bits (62), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 68 GKPGTGKETQAQNILSK--FPEAIHISTGDLLR 98
G PG+GK T A+ + K H+S G++ R
Sbjct: 7 GPPGSGKTTVARLLAEKLGLK---HVSAGEIFR 36
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo and
salvage pathways of DTTP synthesis. Catalytic activity:
ATP + thymidine 5'-phosphate = ADP + thymidine
5'-diphosphate [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 27.3 bits (61), Expect = 9.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 288 KEPAIILYLDAPDDVILARLVKRG 311
P + +YLD +V L RL KRG
Sbjct: 126 DMPDLTIYLDIDPEVALERLRKRG 149
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,949,913
Number of extensions: 1872346
Number of successful extensions: 1872
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1816
Number of HSP's successfully gapped: 98
Length of query: 363
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 265
Effective length of database: 6,590,910
Effective search space: 1746591150
Effective search space used: 1746591150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)