RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11897
(363 letters)
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural
genomics, structure-based function assignment,
decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP:
b.30.5.4
Length = 339
Score = 203 bits (519), Expect = 6e-63
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 125 SYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWS-TY 183
+ + G TVGRVANRI D + +T++ N ++LHGG G W
Sbjct: 58 EFEK-DAASIGKTVGRVANRIKNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVR 116
Query: 184 VDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFN 243
+ V S + + D+G PG T+ + N+L I A P + LTNH+Y+N
Sbjct: 117 HAPESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHAYWN 176
Query: 244 LAGHDIVRE 252
L G D V E
Sbjct: 177 LDGSDTVAE 185
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A
{Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Length = 344
Score = 202 bits (516), Expect = 2e-62
Identities = 59/124 (47%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
Query: 125 SYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYV 184
YL PYFG+ +GRVANRIA G F +D + + ++ N + N LHGG +GFDKV+W+ V
Sbjct: 66 GYLQ-KQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRV 124
Query: 185 DKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNL 244
+ V S +SPDG+EGYPG + T+ L L + A +++ TP+NLTNHSYFNL
Sbjct: 125 LSNGVQFSRISPDGEEGYPGELKVWVTYTLD-GGELIVNYRAQASQATPVNLTNHSYFNL 183
Query: 245 AGHD 248
AG
Sbjct: 184 AGQA 187
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase;
HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB:
1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A*
1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A*
1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Length = 347
Score = 198 bits (507), Expect = 4e-61
Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 125 SYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYV 184
YL + Y G+TVG A RI G I +++ ++QN LHGG + +W+ V
Sbjct: 53 EYLE-KDAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEV 111
Query: 185 ----DKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHS 240
+ +V S +S DG GYPG + + T DN+ I EA+S K T N T +
Sbjct: 112 TDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGNV 171
Query: 241 YFNLAGHD 248
YFNL G
Sbjct: 172 YFNLNGDA 179
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.76A {Lactobacillus acidophilus}
Length = 338
Score = 191 bits (489), Expect = 1e-58
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 125 SYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYV 184
Y + G TVGR+A R+ G++ E + N NH+HGG G D +W
Sbjct: 59 DYSK-ERNFLGGTVGRIAGRVRAGQWKHGNEIHQLPLNDGDNHIHGG-IGTDMHVWDFRP 116
Query: 185 ----DKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHS 240
+ +V ++ PDG+ YPG + ++L ++N L +EAVS K T N NH+
Sbjct: 117 SCDSEHARVDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAVSDKLTIFNPVNHT 176
Query: 241 YFNLAGH 247
YFNL
Sbjct: 177 YFNLGER 183
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region;
aldose_1_epimerase, sugar metabolism, predicted,
structural genomics; 2.00A {Saccharomyces cerevisiae}
Length = 342
Score = 182 bits (464), Expect = 7e-55
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 125 SYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYV 184
YL+ + G+TVGR ANRIA G F++D ++ N N H + +
Sbjct: 51 DYLT-DGNMMGATVGRYANRIAKGVFSLDDGPHKLTVNNCGNTNHSSISSLNLKQYKASP 109
Query: 185 DKDK---------VVMSHMSPDGDEGYPGAVIATTTFQL-TSDNRLFITMEA--VSTKPT 232
++ ++ + +PG + T + L ++ L + +A V T
Sbjct: 110 VENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTLNVAEMTLDMEYQAQLVRGDAT 169
Query: 233 PINLTNHSYFNLAGHD 248
PIN+TNHSYFNL
Sbjct: 170 PINMTNHSYFNLNKVK 185
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Length = 326
Score = 113 bits (284), Expect = 7e-29
Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 17/176 (9%)
Query: 87 EAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVP------DVSYLSSNNPYFGSTVGR 140
AI L V G N+ +++ + V +G +
Sbjct: 15 PAIKAGNEHL-EMIVVP--EWGSNVISLVDKTTNVQLLREPETAESFHDTPTLYGIPILF 71
Query: 141 VANRIAGGKFTIDKENFTISQNVDV--NHLHGGFKGFDKVIWSTYVDKDKVVMSH----- 193
NRI+ G F+ + N NHLHG + +T + V++
Sbjct: 72 PPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLS 131
Query: 194 MSPDGDEGYPGAVIATTTFQLTSDN-RLFITMEAVSTKPTPINLTNHSYFNLAGHD 248
P + +P + T+ + + T+ + P + H+ F
Sbjct: 132 ELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAES 187
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 107 bits (268), Expect = 1e-25
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 126 YLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIW----S 181
YL+ ++ Y G+T+GR ANRI+ GKF++ +++ ++ N VN H F + +
Sbjct: 415 YLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPII 474
Query: 182 TYVDKDKVVMSHM--SPDGDEGYPGAVIATTTFQL-TSDNRLFITMEA--VSTKPTPINL 236
KD +M + D +PG ++ T + + + L I + + + TPINL
Sbjct: 475 QNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATPINL 534
Query: 237 TNHSYFNLAG 246
TNHSYFNL
Sbjct: 535 TNHSYFNLNK 544
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 99.5 bits (249), Expect = 4e-25
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARL 307
IV E+L + M+ L + FLIDGYPR+ Q ++F + +P +++ +D D + RL
Sbjct: 74 GIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRL 133
Query: 308 VKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKS 344
++ +S DD I KRL P++ +++
Sbjct: 134 LQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYET 170
Score = 77.6 bits (192), Expect = 4e-17
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQ + ++ K+ H+STG+LLR E+ + + R + I IM++G LVP
Sbjct: 19 GGPGSGKGTQCEKLVEKY-GFTHLSTGELLREELASESERSKLIRDIMERGDLVPS 73
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 98.7 bits (247), Expect = 8e-25
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARL 307
+ V ++L M+ ++ +K FLIDGYPR+ Q ++F + +P ++LY+DA + + RL
Sbjct: 71 ETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRL 130
Query: 308 VKRGLTSGRPDDKEDAIKKRL 328
+KRG TSGR DD E+ IKKRL
Sbjct: 131 LKRGETSGRVDDNEETIKKRL 151
Score = 78.3 bits (194), Expect = 2e-17
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQ + I+ K+ H+STGDLLR+EV +G+ RG+ + IM++G LVP
Sbjct: 16 GGPGSGKGTQCEKIVQKY-GYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL 70
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 95.3 bits (238), Expect = 2e-23
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 248 DIVREVLYKKMLQELAKAKL-FLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILAR 306
+I +L + + K FLIDG+PR DQA F +D E IL+ D P+D++L R
Sbjct: 78 EITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLER 137
Query: 307 LVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKS 344
L++RG TSGR DD ++IKKR E P+++ F++
Sbjct: 138 LLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFET 175
Score = 74.2 bits (183), Expect = 9e-16
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNT-RGRNIEAIMKQGGLVPD 123
G PG GK TQ + ++ + +H+S GDLLRAE + G I+ +K+G +VP
Sbjct: 22 GGPGAGKGTQCEKLVKDY-SFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 77
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 92.6 bits (231), Expect = 2e-22
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEPAIILYLDAPDDVIL 304
+ ++L + + K FL+DG+PR+++ ++ +KD + +L+ D P++V+
Sbjct: 68 IVTVKLLKNAIDAN--QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMT 125
Query: 305 ARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKS 344
RL+KRG +SGR DD ++IKKR N ++ +
Sbjct: 126 QRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNK 165
Score = 77.6 bits (192), Expect = 5e-17
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQ NI+ F +H+S GDLLR E ++G+ G I ++K G +VP
Sbjct: 13 GGPGSGKGTQCANIVRDF-GWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPS 67
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 90.3 bits (225), Expect = 1e-21
Identities = 25/100 (25%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEPAIILYLDAPDDVIL 304
+++ + + M K K FLIDG+PR++D ++ + + + +L+ D +++ +
Sbjct: 70 SLLKREMDQTMAANAQKNK-FLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
Query: 305 ARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKS 344
R ++RG +SGR DD ++++KR+ ++ PI+ ++
Sbjct: 129 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEE 168
Score = 76.0 bits (188), Expect = 2e-16
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNT-RGRNIEAIMKQGGLVPD 123
G PG GK TQ I+ K+ H+S G+LLR E + ++ G IE +K+G +VP
Sbjct: 10 GGPGAGKGTQCARIVEKY-GYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPV 65
>3nre_A Aldose 1-epimerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}
Length = 291
Score = 77.1 bits (190), Expect = 4e-16
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 18/165 (10%)
Query: 89 IHISTGDLLRAEVRTGNTRGRNIEAIMKQG--GLVPDVSYLSSNNPYFGSTVGRVANRIA 146
+S G L + +V + +G IE + L P + + + ANR++
Sbjct: 5 YTLSHGSL-KLDV---SDQGGVIEGFWRDTTPLLRPGKKSGVATD-ASCFPLVPFANRVS 59
Query: 147 GGKFTIDKENFTISQNVDV--NHLHGGFKGFDKVIWS-TYVDKDKVVMSHMSPDGDEGYP 203
G +F + + NV+ ++LHG G+ W D + + +
Sbjct: 60 GNRFVWQGREYQLQPNVEWDAHYLHGD--GWLGE-WQCVSHSDDSLCLVYEHRS----GV 112
Query: 204 GAVIATTTFQLTSDN-RLFITMEAVSTKPTPINLTNHSYFNLAGH 247
+ F LT+D + +++ + P H YF L+
Sbjct: 113 YHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQ 157
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 75.3 bits (186), Expect = 5e-16
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G P GK TQAQ I+ K+ ISTGD+LRA V++G+ G+ + IM G LV D
Sbjct: 7 GAPVAGKGTQAQFIMEKYG-IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Score = 57.2 bits (139), Expect = 7e-10
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 27/132 (20%)
Query: 259 LQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKR--GLTSG- 315
+ + FL+DG+PR QAD + +L D PD++I+ R+V R SG
Sbjct: 72 IAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGR 131
Query: 316 ------------------------RPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNF 351
R DD+E+ ++KRL++ ++ P++ + N
Sbjct: 132 VYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNT 191
Query: 352 LHKRRESVKSPN 363
+ + + K
Sbjct: 192 KYAKVDGTKPVA 203
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 75.3 bits (186), Expect = 5e-16
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK T + I + F E H+S+GDLLR + G G +A + QG L+PD
Sbjct: 14 GAPGSGKGTVSSRITTHF-ELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPD 68
Score = 53.0 bits (128), Expect = 2e-08
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 30/120 (25%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARL 307
D++ + ++ +L+DG+PR QA+ + + +I L+ P +VI RL
Sbjct: 69 DVMTRLALHELKNL--TQYSWLLDGFPRTLPQAEALDRAYQIDTVI-NLNVPFEVIKQRL 125
Query: 308 VKR--GLTSG-------------------------RPDDKEDAIKKRLIKANENDGPILQ 340
R SG R DDK + + KRL + P+L+
Sbjct: 126 TARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLE 185
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 75.3 bits (186), Expect = 7e-16
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQ+ N+ H+STGDLLR G I+ I+ +G LV D
Sbjct: 36 GAPGSGKGTQSLNLKKSHC-YCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Score = 53.8 bits (130), Expect = 1e-08
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 31/113 (27%)
Query: 259 LQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP-AIILYLDAPDDVILARLVKR--GL 312
L+ K F++DGYPR+ QA ++ ++ + + Y + PD+V++ R+ R
Sbjct: 101 LKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHK 160
Query: 313 TSG-------------------------RPDDKEDAIKKRLIKANENDGPILQ 340
SG R DD ED +KKRL P++
Sbjct: 161 PSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLIS 213
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 74.5 bits (184), Expect = 7e-16
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQ + I ++ H+STGD+LR ++ G G ++I++ G V D
Sbjct: 12 GAPGSGKGTQCEFIKKEY-GLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGD 66
Score = 53.7 bits (130), Expect = 1e-08
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 31/113 (27%)
Query: 259 LQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP-AIILYLDAPDDVILARLVKR--GL 312
F++DG+PR QA + + + + ++Y + D I+ R+ R
Sbjct: 77 FDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHP 136
Query: 313 TSG-------------------------RPDDKEDAIKKRLIKANENDGPILQ 340
SG R DD +A+K RL ++ P+++
Sbjct: 137 ASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVK 189
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 74.5 bits (184), Expect = 8e-16
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA N+ +F A H++TGD+LR+++ G G + IM QGGLV D
Sbjct: 11 GPPGAGKGTQAPNLQERFH-AAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 65
Score = 57.2 bits (139), Expect = 9e-10
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 31/124 (25%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEPA-IILYLDAPDDVI 303
DI+ ++ ++ A F++DG+PR QA DQ +K+ P + L D+++
Sbjct: 66 DIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELL 125
Query: 304 LARLVKR--GLTSG-------------------------RPDDKEDAIKKRLIKANENDG 336
+AR+ R SG R DD DA+KKRL +
Sbjct: 126 VARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTE 185
Query: 337 PILQ 340
PI+
Sbjct: 186 PIVD 189
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 75.0 bits (185), Expect = 8e-16
Identities = 28/56 (50%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA I KF ISTGD+LRA V+ G G + M +G LVPD
Sbjct: 15 GAPGAGKGTQANFIKEKF-GIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPD 69
Score = 56.5 bits (137), Expect = 2e-09
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 27/109 (24%)
Query: 259 LQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKR--GLTSG- 315
L+E A +L DG+PR QAD + +L +D P I+ R+ R SG
Sbjct: 80 LKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGR 139
Query: 316 ------------------------RPDDKEDAIKKRLIKANENDGPILQ 340
R DDKE+ +KKRL P++
Sbjct: 140 TYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLIT 188
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 75.0 bits (185), Expect = 9e-16
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK T Q I F H+S+G LR ++ G + +++ LVPD
Sbjct: 34 GPPGSGKGTVCQRIAQNF-GLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPD 88
Score = 53.8 bits (130), Expect = 1e-08
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 30/122 (24%)
Query: 252 EVLYKKMLQELAK--AKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVK 309
V+ + M+ EL + +L+DG+PR QA+ K + +I L+ P + + RL +
Sbjct: 89 HVITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVI-SLNIPFETLKDRLSR 147
Query: 310 R--GLTSG-------------------------RPDDKEDAIKKRLIKANENDGPILQAF 342
R SG + DDK +A+ RL + + P+++ +
Sbjct: 148 RWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELY 207
Query: 343 KS 344
KS
Sbjct: 208 KS 209
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 73.3 bits (181), Expect = 1e-15
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 14/85 (16%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP-AIILYLDAPDDVI 303
+++RE L A+ + DG+PR QA D+ + +T ++ ++ P++ +
Sbjct: 70 ELIREEL----------AERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEEL 119
Query: 304 LARLVKRGLTSGRPDDKEDAIKKRL 328
+ R+++R GR DD E+ +++RL
Sbjct: 120 VRRILRRAELEGRSDDNEETVRRRL 144
Score = 72.9 bits (180), Expect = 2e-15
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD-VSY 126
G PG GK TQA + + +STGD+LR V G G + IM++G LVPD +
Sbjct: 11 GPPGAGKGTQASRLAQEL-GFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDL-- 67
Query: 127 LSSNNPYFGSTVGRVANRIAGG 148
+ + +A
Sbjct: 68 ----------ILELIREELAER 79
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 74.2 bits (183), Expect = 1e-15
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA + F H++TGD+LRA V +G+ G+ ++A M G LV D
Sbjct: 23 GPPGAGKGTQAPKLAKNFC-VCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSD 77
Score = 51.8 bits (125), Expect = 6e-08
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 31/113 (27%)
Query: 259 LQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP-AIILYLDAPDDVILARLVKR--GL 312
L+ FL+DG+PR QA D ++ KE ++ PD +++ R+ R
Sbjct: 88 LETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHP 147
Query: 313 TSG-------------------------RPDDKEDAIKKRLIKANENDGPILQ 340
SG R DD + A+K RL + P+++
Sbjct: 148 QSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVE 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 73.8 bits (182), Expect = 1e-15
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
+G P +GK TQ + I +K+ + HIS GDLLRAE+ G+ G+ + M++G LVPD
Sbjct: 10 ISGAPASGKGTQCELIKTKY-QLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 66
Score = 67.6 bits (166), Expect = 2e-13
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 23/126 (18%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARL 307
+IV ++ +++ Q A+ +L+DGYPR QA P + LD PD++++ R+
Sbjct: 67 EIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERV 126
Query: 308 VKRGL--TSG---------------------RPDDKEDAIKKRLIKANENDGPILQAFKS 344
V R L +G R DD E+ +K RL +N +L +++
Sbjct: 127 VGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN 186
Query: 345 HIAKVN 350
I KV
Sbjct: 187 IIVKVQ 192
>3os7_A Galactose mutarotase-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: PG4 TLA; 1.80A {Clostridium
acetobutylicum}
Length = 341
Score = 75.7 bits (186), Expect = 2e-15
Identities = 31/201 (15%), Positives = 66/201 (32%), Gaps = 30/201 (14%)
Query: 65 RFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRT--GNT------RGRNIEAIMK 116
+ + E + I + G A + G + + I++
Sbjct: 7 LWIKEEIIWSEH----------KCIRFAAGGY-EALIIPDVGGNVVELKDTNKGVT-ILR 54
Query: 117 QGGLVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDV--NHLHGGFKG 174
+ +G V NRI G F + + + N N++HG K
Sbjct: 55 TPKKDLKFEDFKNRPQVYGLPVLFPPNRIDDGTFKLGDKTYKFPINEAKNNNYIHGFIKN 114
Query: 175 FDKVIWSTYVDKD----KVVMSHMS-PDGDEGYPGAVIATTTFQLTSDNRLFITMEA--V 227
+ +D+D +VV + + + +++L+ L T +
Sbjct: 115 SKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELS-SKGLKQTTSVVNL 173
Query: 228 STKPTPINLTNHSYFNLAGHD 248
S++ P+++ HS FN+ +
Sbjct: 174 SSEEMPLSVGYHSAFNVPFIE 194
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 73.0 bits (180), Expect = 3e-15
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA+ I+ K+ E HISTGD+ RA ++ G G ++ M QG LVPD
Sbjct: 7 GLPGAGKGTQAEQIIEKY-EIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD 61
Score = 52.9 bits (128), Expect = 2e-08
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 32/112 (28%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP-AIILYLDAPDDVI 303
++ ++++++ ++ + K FL+DG+PR QA D + D + +L + + +
Sbjct: 62 EVTIGIVHERLSKDDCQ-KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEEL 120
Query: 304 LARLVKR--GLTSG-------------------------RPDDKEDAIKKRL 328
+ RL R T G R DDK + +K RL
Sbjct: 121 MKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRL 172
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 73.0 bits (180), Expect = 3e-15
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQ + I+ K+ HISTGD+ RA ++ G ++ + +G LVPD
Sbjct: 7 GLPGAGKGTQGERIVEKY-GIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Score = 52.9 bits (128), Expect = 2e-08
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 31/101 (30%)
Query: 259 LQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP-AIILYLDAPDDVILARLVKR--GL 312
L + + FL+DG+PR QA ++ +++ +P ++ + DV++ RL R
Sbjct: 72 LGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICS 131
Query: 313 TSG-------------------------RPDDKEDAIKKRL 328
G R DD E+ + KRL
Sbjct: 132 VCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRL 172
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 73.1 bits (180), Expect = 3e-15
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G G+GK TQ + K+ HI +G + R + G G+ + + +G LVPD
Sbjct: 7 GPNGSGKGTQGNLVKDKY-SLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
Score = 48.8 bits (117), Expect = 6e-07
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 34/106 (32%)
Query: 268 FLIDGYPRDKDQA---DQFVKDTKEP-AIILYLDAPDDVILARLVKR------------- 310
+L+DG+PR+ QA + +++ ++ + P +V R++ R
Sbjct: 80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNI 139
Query: 311 ----------------GLTSGRPDDK-EDAIKKRLIKANENDGPIL 339
G S R DD+ E AI KR L
Sbjct: 140 FIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTL 185
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 71.4 bits (176), Expect = 7e-15
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA + K ISTG+L R + G G + + G LVP
Sbjct: 27 GPPGAGKGTQAVKLAEKL-GIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 81
Score = 68.0 bits (167), Expect = 1e-13
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP-AIILYLDAPDDVI 303
++V + L A F++DGYPR +QA + ++ +L ++V+
Sbjct: 86 ELVDDRL-----NNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL 140
Query: 304 LARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVN 350
L RL RG R DD +D I R+ + P+L+ ++ + V+
Sbjct: 141 LERLKGRG----RADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVD 183
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 71.5 bits (176), Expect = 9e-15
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
F G PG GK TQA+ + + +HISTGD+LR V+ G G+ + M++G LVPD
Sbjct: 5 FLGPPGAGKGTQAKRLAKEK-GFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPD 61
Score = 57.6 bits (140), Expect = 5e-10
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 32/105 (30%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQA---DQFVKDTKEP-AIILYLDAPDDVI 303
++ E K + DG+PR QA D+ ++ +L + PD+V+
Sbjct: 66 ALIEE--------VFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVV 117
Query: 304 LARLVKR--------------------GLTSGRPDDKEDAIKKRL 328
+ RL R R DDK + IKKRL
Sbjct: 118 IERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRL 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 4e-09
Identities = 53/394 (13%), Positives = 117/394 (29%), Gaps = 92/394 (23%)
Query: 5 EPEDN-VLFRFCRFAEPEDNVLFR-FPTTRLFLLFCPNHSTKPSLGFDPSQTGIPLQVEI 62
+P ++ R DN +F + +RL + +L + +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY----LKLRQALLELRPAKNVLID--- 156
Query: 63 PTRFTGKPGTGKET------QAQNILSKFPEAIH-ISTGDLLRAEVRTGNTRGRNIEAIM 115
G G+GK + + K I ++ + T ++ ++
Sbjct: 157 -----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-----NCNSPETVLEMLQKLL 206
Query: 116 KQGGLVPDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTIS----QNV-DVNHLHG 170
Q + P+ + S ++ + + + + + + + NV +
Sbjct: 207 YQ--IDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNVQNAKAW-- 259
Query: 171 GFKGFD---KVIWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRL--FITME 225
F+ K++ +T + K V + A TT ++ D+ E
Sbjct: 260 --NAFNLSCKILLTT---RFKQVTD------------FLSAATTTHISLDHHSMTLTPDE 302
Query: 226 AVSTKPTPINLTNHSYFNLAGHDIVREV-----LYKKMLQELAKAKLFLIDGYPR-DKDQ 279
S L Y + D+ REV ++ E + L D + + D+
Sbjct: 303 VKSL------LLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 280 ADQFVK---DTKEPAII--LYLDA---PDDV-----ILARLVKRGLTSGRPDDKEDAIKK 326
++ + EPA ++ P +L+ + + S K
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 327 RLIKANENDGP-----ILQAFKSHIAKVNFLHKR 355
L++ + I K + LH+
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Score = 37.1 bits (85), Expect = 0.009
Identities = 59/405 (14%), Positives = 107/405 (26%), Gaps = 139/405 (34%)
Query: 8 DNV-------LFRF-CRFAEPEDNVLFRFPTTR---LFLLFCPNHSTKPSL-----GFDP 51
NV F C+ +L TTR + +T SL P
Sbjct: 251 LNVQNAKAWNAFNLSCK-------ILL---TTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 52 SQT---------------------GIPLQVE-IPTRFTGKPGTGKETQAQNILSKFPEAI 89
+ P ++ I T + N K I
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTII 359
Query: 90 HISTGDLLRAEVRTGNTRGRNIE--AIMKQGGLVP-DV-SYLSSNNPYFGSTVGRVANRI 145
S L AE R + + ++ +P + S + + S V V N++
Sbjct: 360 ESSLNVLEPAEYR------KMFDRLSVFPPSAHIPTILLSLIWFDVIK--SDVMVVVNKL 411
Query: 146 AGGKFTIDK--ENFTIS----------QNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSH 193
++K + TIS + + LH + I Y
Sbjct: 412 HK-YSLVEKQPKESTISIPSIYLELKVKLENEYALH-------RSIVDHYNIPKTFDSDD 463
Query: 194 MSPDGDEGYPGAVIA-----------TTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYF 242
+ P + Y + I T F +F+ + K H
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMVFLDFRFLEQK------IRHDST 512
Query: 243 NLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDV 302
+ LQ+L K ++ D P+ ++ V I+ +L ++
Sbjct: 513 AWNASGSILNT-----LQQLKFYKPYICDNDPKY----ERLVNA-----ILDFLPKIEEN 558
Query: 303 IL----ARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFK 343
++ L++ L E++ +A K
Sbjct: 559 LICSKYTDLLRIALM------------------AEDEAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 4e-08
Identities = 81/487 (16%), Positives = 136/487 (27%), Gaps = 175/487 (35%)
Query: 5 EPEDNV--LFRFCRF----AEPEDN---------VLFRFPTTRLFLLFCPN--HSTKPSL 47
EP + +F + EP L F +L N H+ L
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENCYL--EGNDIHALAAKL 108
Query: 48 GFDPSQTGIPLQVEIPTRF-----TGKPGTGKETQA------------------Q-NILS 83
+ T + + I +P K A Q N
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 84 KFPEAIHI-------------STGDLLRAEVRTGN------TRGRNIEAIMKQGGLVPDV 124
F E + + + L +RT T+G NI ++ PD
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 125 SYLSSNNP-------------YF------GSTVGRVANRIAG----GKFTI--------- 152
YL S P Y G T G + + + G + +
Sbjct: 229 DYLLSI-PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 153 DKENFTISQNVD--VNHL-HGGFKG---FDKV-IWSTYVDKDKVVMSHMSPDGDEGYPG- 204
E+F +V + L G + + + + ++ S + +EG P
Sbjct: 288 SWESFF--VSVRKAITVLFFIGVRCYEAYPNTSLPPSILED--------SLENNEGVPSP 337
Query: 205 --AVIATTTFQLTSD----NRLFITMEAVSTKPTPINLTN-HSYFNLAGHDIVREVLYKK 257
++ T Q+ N + V I+L N ++G + LY
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVE-----ISLVNGAKNLVVSGP---PQSLYG- 388
Query: 258 MLQELAKAKLFLIDGYPRDKDQADQFVKDTKE-PAIIL------------YLDAPDDVIL 304
+ L KAK P DQ+ + ++ L D+I
Sbjct: 389 LNLTLRKAKA------PSGLDQSR--IPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 305 ARLVKRGLTSGRPD------DKEDA---------IKKRLIKANENDGPI----LQAFK-S 344
LVK ++ D D D I +R++ P+ FK +
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL-PVKWETTTQFKAT 499
Query: 345 HIAKVNF 351
HI ++F
Sbjct: 500 HI--LDF 504
Score = 43.1 bits (101), Expect = 1e-04
Identities = 42/319 (13%), Positives = 89/319 (27%), Gaps = 136/319 (42%)
Query: 69 KPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLS 128
+ G G + + A + RA+ +T G +I I+
Sbjct: 1628 EQGMGMD-----LYKTSKAAQDV----WNRADNHFKDTYGFSILDIVI------------ 1666
Query: 129 SNNP-----YFGSTVGR-VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFD----KV 178
NNP +FG G+ + + F + ++ + FK +
Sbjct: 1667 -NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI--------FKEINEHSTSY 1717
Query: 179 IWSTYVDKDKVVMSHMSPDGDEGYPGAVIATTTF-Q---LTSDNRLFITMEAVSTKPTPI 234
+ ++G +++ T F Q + F +++ P
Sbjct: 1718 TFR----------------SEKG----LLSATQFTQPALTLMEKAAFEDLKSKGLIPAD- 1756
Query: 235 NLTNHSYFNLAGH------------------DIVREVLYK--KMLQELAKAKLFLIDGYP 274
+ F AGH +V V++ +Q P
Sbjct: 1757 -----ATF--AGHSLGEYAALASLADVMSIESLVE-VVFYRGMTMQVAV----------P 1798
Query: 275 RDKDQADQFVKDTKEPAIILYLDA--PDDVILARLVKRGLTSGRPDDKEDAIKKRLIKAN 332
RD+ + +I A P V + ++A++ + +
Sbjct: 1799 RDELGRSNY-------GMI----AINPGRVAAS-------------FSQEALQYVVERVG 1834
Query: 333 ENDGPILQAFKSHIAKVNF 351
+ G +++ VN+
Sbjct: 1835 KRTGWLVEI-------VNY 1846
Score = 35.4 bits (81), Expect = 0.035
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 38/135 (28%)
Query: 224 MEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLI--DGYPRDKDQAD 281
M+A ST+ P+ L++ S E L+ + +
Sbjct: 1 MDAYSTR--PLTLSHGSL-------------------EHV----LLVPTASFFIASQLQE 35
Query: 282 QFVKDTKEPAIILYLD-APDDVI--LARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPI 338
QF K EP D P + + + G S + + +++
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFL--GYVSSLVEPSKVGQFDQVLNL------C 87
Query: 339 LQAFKSHIAKVNFLH 353
L F++ + N +H
Sbjct: 88 LTEFENCYLEGNDIH 102
Score = 32.3 bits (73), Expect = 0.30
Identities = 51/277 (18%), Positives = 91/277 (32%), Gaps = 84/277 (30%)
Query: 43 TKPSLGFDPSQTGI----PLQVEIPTRFTGKPG----------TGKETQAQNILSK--FP 86
K + GF S I P+ + I F G+ G + + ++ F
Sbjct: 1653 FKDTYGF--SILDIVINNPVNLTI--HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 87 EAIHISTG-------DLLRAEVRTGNTR------GRNIEAIMKQGGLVPDVSYLSSNNPY 133
E ST LL T T+ + +K GL+P + +
Sbjct: 1709 EINEHSTSYTFRSEKGLLS---ATQFTQPALTLMEKAAFEDLKSKGLIPADATFA----- 1760
Query: 134 FG-STVG----RVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGF----DKVIWSTY- 183
G S +G + +A +I V+V G D++ S Y
Sbjct: 1761 -GHS-LGEYAALAS--LADV--------MSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 184 ---VDKDKVVMSHMSPDGDEGYPGAVIATTTFQLT-----SDNRLFI---TMEAVSTKPT 232
++ +V S S + + V T + + +N+ ++ + A+ T
Sbjct: 1809 MIAINPGRVAAS-FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT--- 1864
Query: 233 PINLTNH-SYFNLAGHDIVREVLYKKMLQELAKAKLF 268
+TN ++ L DI+ L K + E + LF
Sbjct: 1865 ---VTNVLNFIKLQKIDIIE--LQKSLSLEEVEGHLF 1896
Score = 31.2 bits (70), Expect = 0.63
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 31/109 (28%)
Query: 254 LYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAII-LYLDAPDDVILARLVKRGL 312
LYK + A+ ++ ++AD KDT +I+ + ++ P ++ + G
Sbjct: 1635 LYKT--SKAAQ-DVW---------NRADNHFKDTYGFSILDIVINNPVNLT----IHFGG 1678
Query: 313 TSGRPDDKEDAIKKR---LIKANENDG-----PILQAFKSHIAKVNFLH 353
G+ I++ +I DG I + H F
Sbjct: 1679 EKGK------RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 48.0 bits (114), Expect = 8e-07
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
TG G GK T + + ++ + GD++ V G + ++ L
Sbjct: 7 ITGPAGVGKSTTCKRLAAQLDNS-AYIEGDIINHMVVGGYRPPWESDELLA---LTWK 60
Score = 41.8 bits (98), Expect = 1e-04
Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 247 HDIVREVLYKKMLQELAKAKLFLIDG--YPRDKDQADQFVKDTKEPAIILY--LDAPDDV 302
+ + + + L ++D +P + + Q V+ + I + L +
Sbjct: 55 LALTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREE 114
Query: 303 ILARLVKRGLTSGRPDDKEDAIKK 326
+L R R + + +++
Sbjct: 115 LLRRDALRKKDEQMGERCLELVEE 138
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 45.2 bits (107), Expect = 6e-06
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQ 117
TG PG+GK A +L + A I D++R G + K+
Sbjct: 6 ITGMPGSGKSEFA-KLLKER-GAKVIVMSDVVRKRYSIEAKPGERLMDFAKR 55
Score = 43.3 bits (102), Expect = 3e-05
Identities = 13/80 (16%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 246 GHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILA 305
G +V + +++ L + DG R + ++F + + I+ + +P +
Sbjct: 61 GDGVVARLCVEELGTS--NHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYK 117
Query: 306 RLVKRGLTSGRPDDKEDAIK 325
R+++R S + + I+
Sbjct: 118 RMIERLR-SDDSKEISELIR 136
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Length = 307
Score = 43.0 bits (101), Expect = 9e-05
Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 24/186 (12%)
Query: 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWS-TYVDKDKVVMS-HMSPDG 198
+ R+ ++T + + + Q HG + D + K+ + + +
Sbjct: 52 IVGRLKNDEYTYKGKTYHLGQ-------HGFARNAD---FEVENHTKESITFLLKDNEET 101
Query: 199 DEGYPGAVIATTTFQLTSDNRLFITMEAV--STKPTPINLTNHSYFNL-AGHDIVREVLY 255
+ YP + L +N L V S + + H FNL H +E Y
Sbjct: 102 RKVYPFKFEFRVNYNLM-NNLLEENFSVVNKSDETMIFGVGGHPGFNLPTDHGENKEDFY 160
Query: 256 KKMLQELAKAKLFLIDGYPRDKDQADQFVKDT--------KEPAIILYLDAPDDVILARL 307
M + + ++ L D +++ K+ A+I L D+ + R
Sbjct: 161 FDMHPSVTRVRIPLKDASLDWNNRSLAPTDSLIALSDDLFKDDALIYELRGNDNKVSLRT 220
Query: 308 VKRGLT 313
K
Sbjct: 221 DKNKFH 226
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 42.7 bits (100), Expect = 1e-04
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 286 DTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGP 337
++ +D + R+ KR L SG + + K ND
Sbjct: 285 ADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGRE----KFRSNDLL 332
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 40.7 bits (95), Expect = 2e-04
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDG---YPRDKDQADQFVKDTKEPAIILYLDAPDDVIL 304
+LY L + +++ D ++ I + A DV++
Sbjct: 60 ATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLV 119
Query: 305 ARLVKRGLTSGRPDDKEDA 323
R++ R R D
Sbjct: 120 ERILSRIAQGARHPGHCDD 138
Score = 27.6 bits (61), Expect = 5.2
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRA 99
TG P TGK T +Q L+ +S
Sbjct: 10 VTGHPATGKTTLSQ-ALATGLRLPLLSKDAFKEV 42
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus
casei}
Length = 294
Score = 41.4 bits (97), Expect = 3e-04
Identities = 28/178 (15%), Positives = 50/178 (28%), Gaps = 15/178 (8%)
Query: 141 VANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKVVMSHMSPDGD- 199
+ ++ + + + +SQ+ GF D + V +
Sbjct: 52 SIGKSNQDQYRLGAKTYPMSQH--------GF-ARDYDFDVSDKSDSAVTFTQHQNAETL 102
Query: 200 EGYPGAVIATTTFQLTSDNRLFITMEAV--STKPTPINLTNHSYFNLAGHDIVREVLYKK 257
+ +P T+ LT D L + +K P L H FN+ Y
Sbjct: 103 KKFPFEYTLAVTYMLT-DGGLSVHYTVTNDDSKSMPFALGFHPAFNVGLKADGSFDDYDL 161
Query: 258 ML--QELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLT 313
+ + + R+ D D + + L VILA T
Sbjct: 162 TVEPLNSPLQRFGIGPVPFRNGDVEDIPGAEGNRLPLTHDLLDGGLVILANSEIAKAT 219
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 37.4 bits (87), Expect = 0.004
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 295 YLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGP 337
L+ P + ARLV+R L G + A+ +A ND
Sbjct: 153 RLEVPMADLEARLVQRWLDHGLNH--DAAVA----RAQGNDLA 189
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 36.5 bits (84), Expect = 0.006
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 7/89 (7%)
Query: 235 NLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIIL 294
Y I+ E L + ++D + D F I+
Sbjct: 49 EQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWF-------HIVF 101
Query: 295 YLDAPDDVILARLVKRGLTSGRPDDKEDA 323
L +V+ RL RG + D
Sbjct: 102 VLRTDTNVLYERLETRGYNEKKLTDNIQC 130
Score = 30.8 bits (69), Expect = 0.42
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 67 TGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100
TG PG GK T + L+ +I+ GDL R E
Sbjct: 17 TGTPGVGKTTLGK-ELASKSGLKYINVGDLAREE 49
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure
initiative, no structural genomics consortium, NESG,
SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Length = 289
Score = 35.9 bits (83), Expect = 0.014
Identities = 34/224 (15%), Positives = 61/224 (27%), Gaps = 29/224 (12%)
Query: 86 PEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYLSSNNPYFGSTVGR----- 140
P H+ A + RG + QG + Y S R
Sbjct: 11 PLTYHLEDDQS-LARLSLVPGRGGLVTEWTVQGQ---PILYFDRERFQDPSLSVRGGIPI 66
Query: 141 ---VANRIAGGKFTIDKENFTISQNVDVNHLHGGF---KGFDKVIWSTYVDKDKVVMSHM 194
+ + +F +++ + Q HG F + +VI D ++ +
Sbjct: 67 LFPICGNLPQDQFNHAGKSYRLKQ-------HG-FARDLPW-EVIGQQTQDNARLDLRLS 117
Query: 195 SPDGD-EGYPGAVIATTTFQLTSDNRLFITMEAV--STKPTPINLTNHSYFNLAGHDIVR 251
D E +P A ++QL + L I + P +L H YF +
Sbjct: 118 HNDATLEAFPFAFELVFSYQL-QGHSLRIEQRIANLGDQRMPFSLGFHPYFFCREKLGIT 176
Query: 252 -EVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIIL 294
+ L + + D +P
Sbjct: 177 LAIPANDYLDQKTGDCHGYDGQLNLTSPELDLAFTQISQPRAHF 220
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 34.3 bits (78), Expect = 0.029
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 67 TGKPGTGKETQAQNILSKFPEAIHISTGDLLRAE 100
TG PGTGK + A+ I ++ H+ G L++
Sbjct: 16 TGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN 49
Score = 29.7 bits (66), Expect = 1.0
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 252 EVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRG 311
+ L M + ++D + + F +++ L +V+ RL KR
Sbjct: 70 DRLLDFMEPIMVSRGNHVVDYHSSELFPERWF-------HMVVVLHTSTEVLFERLTKRQ 122
Query: 312 LTSGRPDDKEDA 323
+ + + +A
Sbjct: 123 YSEAKRAENMEA 134
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 34.3 bits (78), Expect = 0.035
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 66 FTGKPGTGKETQAQNILSKF-PEAIHISTGDLLRAEVRTGNTRGRNIEA 113
+G PG+GK T A+ + + +H D L ++ G ++
Sbjct: 14 LSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIKHGRIDPWLPQS 61
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 34.1 bits (78), Expect = 0.052
Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 238 NHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDG---YPRDKDQADQFVKDTKEPAIIL 294
+ + + +++ Y+ ++ K ++D Y + K + I+
Sbjct: 46 SFPVWKEKYEEFIKKSTYR-LIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAII 104
Query: 295 YLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRL 328
YL A DV++ R ++R P++ + ++
Sbjct: 105 YLKASLDVLIRRNIER--GEKIPNEVIKKMYEKF 136
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 33.2 bits (76), Expect = 0.068
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGR 109
G PG+GK T A+ ++K P +I+ D R + R
Sbjct: 9 GCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDE 49
Score = 30.5 bits (69), Expect = 0.53
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 247 HDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKE---PAIILYLDAPDDVI 303
+ + K +L K +I + ++ + KE D P +
Sbjct: 61 TGMQFDTA-KSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119
Query: 304 LARLVKRG 311
+ R KRG
Sbjct: 120 VKRNSKRG 127
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.8 bits (75), Expect = 0.10
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 277 KDQADQFVKDTKEPAIILYLDAPDDVILARLVKRG 311
+ Q K A ++YL A VI RL RG
Sbjct: 82 ERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG 116
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 33.1 bits (75), Expect = 0.12
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGR 109
G PG+GK T A+ ++K P +I+ D R + R
Sbjct: 9 GCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDE 49
Score = 27.7 bits (61), Expect = 6.1
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 247 HDIVREVLYKKMLQELAKAKLFLIDG---YPRDKDQADQFVKDTKEPAIILYLDAPDDVI 303
+ + K +L K +I P + + F K+ D P +
Sbjct: 61 TGMQFDTA-KSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119
Query: 304 LARLVKRG 311
+ R KRG
Sbjct: 120 VKRNSKRG 127
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 30.6 bits (70), Expect = 0.58
Identities = 16/89 (17%), Positives = 40/89 (44%), Gaps = 28/89 (31%)
Query: 247 HDIVREVLYKKMLQELAKAKLFLID-------GYPRDKDQADQFVKDTKEPAIILYLDAP 299
H + + + +K+ + L++ LF+++ G ++ D+ ++ + AP
Sbjct: 88 HRALYKEI-EKITKNLSEDTLFILEASLLVEKGTYKNYDK-------------LIVVYAP 133
Query: 300 DDVILARLVKRGLTSGRPDDKEDAIKKRL 328
+V R +KRG++ E+ ++R
Sbjct: 134 YEVCKERAIKRGMS-------EEDFERRW 155
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 30.4 bits (68), Expect = 0.69
Identities = 9/63 (14%), Positives = 22/63 (34%)
Query: 248 DIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARL 307
D R + + LA + ++ + D+ + ++L + V+ R+
Sbjct: 69 DDDRWPWLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERM 128
Query: 308 VKR 310
R
Sbjct: 129 HHR 131
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 30.2 bits (69), Expect = 0.87
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 19/76 (25%)
Query: 293 ILYLDAPDDVILARLVKR-GLTSGRPDDKEDAIK---------KRLIKAN---ENDGPIL 339
IL +D LAR +R E + +RL A+ ND +
Sbjct: 127 ILVVDVSPQTQLARSAQRDNNN------FEQIQRIMNSQVSQQERLKWADDVINNDAELA 180
Query: 340 QAFKSHIAKVNFLHKR 355
Q KV LH+
Sbjct: 181 QNLPHLQQKVLELHQF 196
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 30.6 bits (69), Expect = 0.88
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 58 LQVEIPTRFTGKPGTGKETQAQNILSKFPEAIHIS 92
L P G PG+GK + L FP+ +S
Sbjct: 1301 LSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVS 1335
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 29.9 bits (67), Expect = 1.1
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 54 TGIPLQVEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNI 111
+G + ++ + T + P I LR V RG+
Sbjct: 44 SGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKA---LRGMVSHKTARGKAA 98
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 29.5 bits (67), Expect = 1.2
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 288 KEPAIILYLDAPDDVILARLVKRGLTSGRP----DDKEDAIKKRL 328
+ ++YL AP + + RL RP + ++ L
Sbjct: 92 RAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVL 136
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 29.5 bits (67), Expect = 1.2
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 288 KEPAIILYLDAPDDVILARLVKRGLTSGRP----DDKEDAIKK 326
E +++YL A D L R+ ++G RP ++ ++ +++
Sbjct: 96 SETGVVIYLTASIDTQLKRIGQKGEMR-RPLFIKNNSKEKLQQ 137
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 29.2 bits (65), Expect = 1.4
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 67 TGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSY 126
TG+PG GK T ++ K E + EVR T+ R +
Sbjct: 6 TGEPGVGKTT----LVKKIVERLGKRAIGFWTEEVRDPETKKR----------TGFRIIT 51
Query: 127 LSSNNPYFGSTVGRVANRIAGGKFTIDKENF 157
F S + G + ++ + F
Sbjct: 52 TEGKKKIFSSKFFTSKKLV--GSYGVNVQYF 80
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H
1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J
2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Length = 142
Score = 28.6 bits (65), Expect = 1.6
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 65 RFTGKPGTGKETQAQNILSKFPEAI 89
TG G K+ + ++++ PE +
Sbjct: 76 HHTGHIGGIKQATFEEMIARRPERV 100
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii}
Length = 213
Score = 29.2 bits (66), Expect = 1.6
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 276 DKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKED 322
D D + +P I Y+ D+ L R+ K + D
Sbjct: 108 DIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGAD 154
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 29.0 bits (66), Expect = 1.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 284 VKDTKEPAIILYLDAPD-DVILARLVKRGLTSGRPDDKEDAIKKRLIKANE 333
+K T I +++ P DV+ RL R + E+++ KRL A
Sbjct: 110 IKKTDLCPIYIFVQPPSLDVLEQRLRLRNT------ETEESLAKRLAAART 154
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.9 bits (64), Expect = 1.7
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTR-GRNIEAIMKQGGLVPDV 124
TG PG GK T ++ + EVR G R G ++ + G + V
Sbjct: 6 LTGPPGVGKTTLIHKASEVL-KSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 125 SYLSSNNPYFGSTVGRVANRIAGGKFTIDKENF 157
G++ +D +F
Sbjct: 65 GLEPPPGKRE----------CRVGQYVVDLTSF 87
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N
2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N
2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Length = 140
Score = 28.6 bits (65), Expect = 1.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 65 RFTGKPGTGKETQAQNILSKFPEAI 89
R++G PG K+ + +L+ PE +
Sbjct: 74 RYSGYPGGLKKIPLEKMLATHPERV 98
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus}
Length = 148
Score = 28.7 bits (65), Expect = 1.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 65 RFTGKPGTGKETQAQNILSKFPEAI 89
TG PG ++ A + + P AI
Sbjct: 79 SHTGYPGGFRQVTAAQLHLRDPVAI 103
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A
{Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Length = 163
Score = 28.7 bits (65), Expect = 1.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 65 RFTGKPGTGKETQAQNILSKFPEAI 89
R++G PG K+ + +L+ PE +
Sbjct: 97 RYSGYPGGLKKIPLEKMLATHPERV 121
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.9
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 251 REVLYKKMLQE-LAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVI 303
+ K M QE KAK L + R +Q ++ + + Y D+I
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 28.7 bits (65), Expect = 2.0
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 282 QFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKA 331
+F + P + +YL+ +V R++K R D ++ +++I+
Sbjct: 117 EFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEG 166
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H*
1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G*
3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Length = 174
Score = 28.8 bits (65), Expect = 2.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 65 RFTGKPGTGKETQAQNILSKFPEAI 89
R+TG G K A+ LSK PE +
Sbjct: 102 RYTGYQGGLKTETAREALSKHPERV 126
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 28.8 bits (65), Expect = 2.2
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 282 QFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKA 331
+F + P + +YL+ +V R++K R D ++ +++I+
Sbjct: 141 EFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEG 190
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM
barrel, endonucle hydrolase, structural genomics,
NPPSFA; 1.58A {Thermus thermophilus}
Length = 270
Score = 28.6 bits (64), Expect = 3.0
Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 26/104 (25%)
Query: 192 SHMSPDGDEGYPGAV-----IATTTFQL-TSDNR-------------LFIT-MEAVSTKP 231
H+S G +G GAV + T FQ+ R F EA P
Sbjct: 6 FHLSIAGKKGVAGAVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGGLP 65
Query: 232 TPINLTNH-SYF-NLAGHDIVREVLYKKMLQELAKAKLFLIDGY 273
I H SY NL + E + +L KA L ++
Sbjct: 66 AVI----HASYLVNLGAEGELWEKSVASLADDLEKAALLGVEYV 105
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 28.6 bits (64), Expect = 3.2
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 291 AIILYLDAPDDVILARLVKRGLTSGRP----DDKEDAIKKRLIK 330
I ++LD P + + R + T RP D+ D L +
Sbjct: 143 GISIWLDVPLEALAHR-IAAVGTGSRPLLHDDESGDTYTAALNR 185
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 28.5 bits (63), Expect = 3.3
Identities = 4/31 (12%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 281 DQFVKDTKEPAIILYLDAPDDVILARLVKRG 311
++ + I+ + + RL R
Sbjct: 150 ATLPREPQGGNIV-VTTLNVEEHIRRLRTRA 179
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 28.4 bits (63), Expect = 3.3
Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 34/162 (20%)
Query: 213 QLTSDNRLFITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDG 272
Q + + + + + + ++ + Y ++ E K
Sbjct: 67 QAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYID-FYNNVVLENLKIPENK--- 122
Query: 273 YPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIK------- 325
I++YL ++R+ KR GR ++ +
Sbjct: 123 ---------------LSFDIVIYLRVSTKTAISRIKKR----GRSEELLIGEEYWETLNK 163
Query: 326 --KRLIKANENDGPILQ--AFKSHIAKVNFLHKRRESVKSPN 363
+ K N D P A ++ + + S+K+PN
Sbjct: 164 NYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSIKNPN 205
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 3.4
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 67 TGKPGTGKETQAQNILSKFPE----AIHISTGDLLRAEVRTGN 105
TG PG G T +Q + + +S G ++ + N
Sbjct: 9 TGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEEN 51
>3zvl_A Bifunctional polynucleotide phosphatase/kinase;
hydrolase-transferase complex, base excision repair,
BER, non-homologous END-joining, NHEJ; 1.65A {Mus
musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B*
3u7h_B* 3u7g_A*
Length = 416
Score = 28.7 bits (63), Expect = 3.7
Identities = 32/233 (13%), Positives = 67/233 (28%), Gaps = 29/233 (12%)
Query: 133 YFGSTVGRVANRIAGGK---FTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYVDKDKV 189
+ G GR+AN G K F+ F ++ + F + +
Sbjct: 179 FVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELP------ 232
Query: 190 VMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPI---NLTNHSYFNLAG 246
P + ++ L+ + + + + + +L + Y ++
Sbjct: 233 ---AFDPRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289
Query: 247 HDIVREVLYKKMLQE-LAKAKLFLIDGYPRDKDQADQFV---KDTKEPAIILYLDAPDDV 302
+ Q L + K +ID D +++ KD P A +
Sbjct: 290 DTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQ 349
Query: 303 ILARLVKRGLTSGR----PDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNF 351
R +T D + +K+ +G F I ++ F
Sbjct: 350 ARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEG-----F-LEILEIPF 396
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 27.8 bits (63), Expect = 4.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 280 ADQFVKDTKEPAIILYLDAPDDVIL-ARLVKRGLTSGRPDDKEDAIKKRLIKANE 333
A Q +++ PA+ +++ P L RL+KR D I++RL A E
Sbjct: 109 ARQ-IRELFPPALSIFILPPSIEALRERLIKRRQ------DDTAIIEQRLALARE 156
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 27.9 bits (63), Expect = 4.0
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 280 ADQFVKDTKEPAIILYLDAPDDVIL-ARLVKRGLTSGRPDDKEDAIKKRLIKANE 333
A +F++ +E + +++ P L RL R D + ++ RL A
Sbjct: 130 AFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRA------DDSEVVEARLKGAAF 178
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 27.6 bits (61), Expect = 4.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 293 ILYLDAPDDVILARLVKRGLTSGRPDDKEDAI 324
L AP +V+L RL + G ED +
Sbjct: 108 HFTLIAPLNVVLERLRRDGQPQVNVGTVEDRL 139
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 27.5 bits (62), Expect = 4.7
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 285 KDTKEPAIILYLDAPDDVILARLVKRGLTSGRP-----DDKEDAIKKR 327
++ K YL + ++ RL ++ RP ++ +KR
Sbjct: 92 ENLKGLGTTFYLKMDFETLIKRLNQKEREK-RPLLNNLTQAKELFEKR 138
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 27.9 bits (63), Expect = 4.9
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 280 ADQFVKDTKEPAIILYLDAPDDVIL-ARLVKRGLTSGRPDDKEDAIKKRLIKANE 333
A Q ++ A +++ P + L RL RG D E+ I KR+ +A
Sbjct: 120 AQQ-IRQKMPHARSIFILPPSKIELDRRLRGRGQ------DSEEVIAKRMAQAVA 167
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 27.4 bits (62), Expect = 5.0
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 306 RLVKRGLTSGRPDDKEDAIKKRLIKANE 333
RL RG + E++I KRL A
Sbjct: 131 RLEGRGT------ETEESINKRLSAAQA 152
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 250
Score = 27.8 bits (62), Expect = 5.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 65 RFTGKPGTGKETQAQNILSKFPEAI 89
R +G+PG KE + + PE I
Sbjct: 175 RHSGRPGGLKEETFDQLQKRIPERI 199
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 27.5 bits (62), Expect = 5.1
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 306 RLVKRGLTSGRPDDKEDAIKKRLIKANE 333
RLV RG + ++ I+ R+ +A +
Sbjct: 135 RLVGRGT------ESDEKIQSRINEARK 156
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 27.5 bits (62), Expect = 5.2
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 280 ADQFVKDTKEP--AIILYLDAPD-DVILARLVKRGLTSGRPDDKEDAIKKRLIKANE 333
Q +K + A+ +++ P DV+L+RL+ R + ++ I+KR+ + N
Sbjct: 126 VKQ-LKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT------ENQEQIQKRMEQLNI 175
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 27.5 bits (62), Expect = 5.4
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 280 ADQFVKDTKEP--AIILYLDAPDDVIL-ARLVKRGLTSGRPDDKEDAIKKRLIKANE 333
Q +K++K I +++ P IL RL R +K + I KR+ +
Sbjct: 115 VKQ-LKESKHIQDGIYIFVKPPSIDILLGRLKNRNT------EKPEEINKRMQELTR 164
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 27.5 bits (62), Expect = 6.3
Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 306 RLVKRGLTSGRPDDKEDAIKKRLIKANE 333
R++ RG + + +++R+ A +
Sbjct: 137 RIIGRGT------ESMEVVEERMETAKK 158
>3pnx_A Putative sulfurtransferase DSRE; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; HET: MSE GOL; 1.92A {Syntrophomonas wolfei}
Length = 160
Score = 26.9 bits (59), Expect = 8.0
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 184 VDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVS--TKPTPINLTNHSY 241
++ K+ + S D D+ +IA ++ + +F + P + + S
Sbjct: 2 MENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSL 61
Query: 242 FNLA 245
+ A
Sbjct: 62 YEQA 65
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 27.0 bits (59), Expect = 8.3
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 276 DKDQADQFVKDTKEPAIILYLDAPDD 301
Q +F+KD + I+ D
Sbjct: 13 TLKQVQEFLKDGDDVVILGVFQGVGD 38
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 26.8 bits (60), Expect = 8.3
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 288 KEPAIILYLDAPDDVILARLVKRGLTSGRP-----DDKEDAIKKR 327
++ +YL A + + RL + S RP + +R
Sbjct: 91 EKAGFCIYLKADFEYLKKRL-DKDEISKRPLFYDEIKAKKLYNER 134
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 27.0 bits (59), Expect = 8.6
Identities = 9/39 (23%), Positives = 11/39 (28%)
Query: 273 YPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRG 311
Y +YL A V L RL +R
Sbjct: 133 YQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRA 171
>2kpt_A Putative secreted protein; methods development, alpha/beta,
structural genomics, PSI-2, protein structure
initiative; NMR {Corynebacterium glutamicum}
Length = 148
Score = 26.8 bits (59), Expect = 8.6
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 280 ADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPIL 339
Q ++ +++Y AP++ T D +A + L + G L
Sbjct: 64 TQQALQANGGGNVLIYALAPEERQYGIQGGTQWTDAELDAANNAAFQAL-SQEDWAGSAL 122
Query: 340 QA 341
Sbjct: 123 AL 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,618,172
Number of extensions: 353718
Number of successful extensions: 1058
Number of sequences better than 10.0: 1
Number of HSP's gapped: 993
Number of HSP's successfully gapped: 136
Length of query: 363
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 268
Effective length of database: 4,049,298
Effective search space: 1085211864
Effective search space used: 1085211864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)