RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11897
(363 letters)
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis
[TaxId: 1358]}
Length = 340
Score = 121 bits (305), Expect = 2e-32
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 122 PDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWS 181
+ Y G+TVG A RI G I +++ ++QN LHGG + +W+
Sbjct: 48 DSAKEYLEKDAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWT 107
Query: 182 TYVDKD----KVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLT 237
V +V S +S DG GYPG + + T DN+ I EA+S K T N T
Sbjct: 108 YEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPT 167
Query: 238 NHSYFNLAGHD 248
+ YFNL G
Sbjct: 168 GNVYFNLNGDA 178
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 329
Score = 106 bits (264), Expect = 1e-26
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 122 PDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIW- 180
+ + G TVGRVANRI D + +T++ N ++LHGG G W
Sbjct: 44 DTIDEFEKDAASIGKTVGRVANRIKNSTLHFDGKQYTMTPNNGPHYLHGGPNGLGYRKWE 103
Query: 181 STYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHS 240
+ V S + + D+G PG T+ + N+L I A P + LTNH+
Sbjct: 104 VVRHAPESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQLIIEHHATCDTPGLLALTNHA 163
Query: 241 YFNLAGHDIVREVLYK 256
Y+NL G D V E +
Sbjct: 164 YWNLDGSDTVAEHFLE 179
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 106 bits (264), Expect = 1e-26
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 125 SYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWSTYV 184
YL+ ++ Y G+T+GR ANRI+ GKF++ +++ ++ N VN H F + + +
Sbjct: 57 GYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPI 116
Query: 185 DKDK------VVMSHMSPDGDEGYPGAVIATTTFQLT---SDNRLFITMEAVSTKPTPIN 235
++ + + D +PG ++ T + + + + + + TPIN
Sbjct: 117 IQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATPIN 176
Query: 236 LTNHSYFNLAGHD 248
LTNHSYFNL
Sbjct: 177 LTNHSYFNLNKPY 189
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 344
Score = 96.1 bits (238), Expect = 5e-23
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
Query: 122 PDVSYLSSNNPYFGSTVGRVANRIAGGKFTIDKENFTISQNVDVNHLHGGFKGFDKVIWS 181
++ PYFG+ +GRVANRIA G F +D + + ++ N + N LHGG +GFDKV+W+
Sbjct: 62 AELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWT 121
Query: 182 TYVDKDKVVMSHMSPDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSY 241
V + V S +SPDG+EGYPG + T+ L L + A +++ TP+NLTNHSY
Sbjct: 122 PRVLSNGVQFSRISPDGEEGYPGELKVWVTYTLD-GGELIVNYRAQASQATPVNLTNHSY 180
Query: 242 FNLAGH 247
FNLAG
Sbjct: 181 FNLAGQ 186
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 59.2 bits (142), Expect = 5e-11
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVS 125
G PG GK TQA+ I++ + HISTGD+ RA ++ G G + M +G LVPD
Sbjct: 5 LMGLPGAGKGTQAEKIVAAY-GIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEV 63
Query: 126 Y 126
Sbjct: 64 T 64
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 56.0 bits (134), Expect = 4e-10
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG GK TQA I+ K+ HISTGD+ RA ++ G G ++ M QG LVPD
Sbjct: 5 LMGLPGAGKGTQADRIVEKYG-TPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 51.9 bits (123), Expect = 1e-08
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G P GK TQAQ I+ K+ ISTGD+LRA V++G+ G+ + IM G LV D
Sbjct: 5 LLGAPVAGKGTQAQFIMEKY-GIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Score = 32.6 bits (73), Expect = 0.042
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 247 HDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILAR 306
D + L K+ + + FL+DG+PR QAD + +L D PD++I+ R
Sbjct: 60 TDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119
Query: 307 LVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVNFLHKRRESVKSPN 363
DD+E+ ++KRL++ ++ P++ + N + + + K
Sbjct: 120 --------IVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVA 168
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 49.6 bits (117), Expect = 9e-08
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGR-NIEAIMKQGGLVPDV 124
G PG GK TQ I+ K+ H+S G+LLR E + +++ IE +K+G +VP
Sbjct: 6 VLGGPGAGKGTQCARIVEKYG-YTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE 64
Query: 125 SY 126
Sbjct: 65 IT 66
Score = 34.2 bits (77), Expect = 0.014
Identities = 22/85 (25%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 264 KAKLFLIDGYPRDKDQADQF---VKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDK 320
+ FLIDG+PR++D + + + + +L+ D +++ + R ++RG +SGR DD
Sbjct: 83 QKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDN 142
Query: 321 EDAIKKRLIKANENDGPILQAFKSH 345
++++KR+ ++ PI+ ++
Sbjct: 143 RESLEKRIQTYLQSTKPIIDLYEEM 167
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 48.7 bits (115), Expect = 1e-07
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQ 117
G PG GK TQA + K ISTG+L R + G G + +
Sbjct: 5 LLGPPGAGKGTQAVKLAEKL-GIPQISTGELFRRNIEEGTKLGVEAKRYLDA 55
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 48.0 bits (113), Expect = 3e-07
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGL 120
+G P +GK TQ + I +K+ HIS GDLLRAE+ G+ G+ + M++G L
Sbjct: 8 ISGAPASGKGTQCELIKTKYQ-LAHISAGDLLRAEIAAGSENGKRAKEFMEKGQL 61
Score = 31.8 bits (71), Expect = 0.069
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 243 NLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDV 302
L +IV ++ +++ Q A+ +L+DGYPR QA P + LD PD++
Sbjct: 60 QLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDEL 119
Query: 303 ILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSHIAKVN 350
++ R+V D E+ +K RL +N +L +++ I KV
Sbjct: 120 LVERVVFD--------DTEEKVKLRLETYYQNIESLLSTYENIIVKVQ 159
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 47.6 bits (112), Expect = 5e-07
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVP 122
G PG GK TQA + F H++TGD+LRA V +G+ G+ ++A M G LV
Sbjct: 8 LLGPPGAGKGTQAPKLAKNF-CVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 63
Score = 31.8 bits (71), Expect = 0.078
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 255 YKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGL-T 313
+K L+ FL+DG+PR QA+ ++ L + + L++R
Sbjct: 71 IEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGR 130
Query: 314 SGRPDDKEDAIKKRLIKANENDGPILQAFKSH 345
DD + A+K RL + P+++ +
Sbjct: 131 LIHSDDNKKALKIRLEAYHTQTTPLVEYYSKR 162
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 47.1 bits (111), Expect = 6e-07
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGL 120
G PG+GK T + I F E H+S+GDLLR + G G + + QG L
Sbjct: 11 IMGAPGSGKGTVSSRITKHF-ELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 44.9 bits (105), Expect = 3e-06
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVS 125
G PG GK TQA N+ +F A H++TGD+LR+++ G G + IM QGGLV D
Sbjct: 7 LIGPPGAGKGTQAPNLQERF-HAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 65
Query: 126 Y 126
Sbjct: 66 M 66
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 44.2 bits (103), Expect = 6e-06
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQ + I+ K+ H+STGDLLRAEV +G+ RG+ + IM++G LVP
Sbjct: 15 GGPGSGKGTQCEKIVQKYG-YTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPL 69
Score = 39.9 bits (92), Expect = 2e-04
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 242 FNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDD 301
L + V ++L M+ ++ +K FLIDGYPR+ Q ++F + +P ++LY+DA +
Sbjct: 64 GQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPE 123
Query: 302 VILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPILQAFKSH 345
+ RL+KRG TSGR DD E+ IKKRL + P++ ++
Sbjct: 124 TMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKR 167
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 42.7 bits (99), Expect = 2e-05
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTR-GRNIEAIMKQGGLVPDV 124
G PG GK TQ + ++ + +H+S GDLLRAE ++ G I+ +K+G +VP
Sbjct: 13 VLGGPGAGKGTQCEKLVKDYS-FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQE 71
Query: 125 SY 126
Sbjct: 72 IT 73
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 42.7 bits (99), Expect = 2e-05
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G PG+GK TQ NI+ F +H+S GDLLR E ++G+ G I ++K G +VP
Sbjct: 13 GGPGSGKGTQCANIVRDFG-WVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPS 67
Score = 37.3 bits (85), Expect = 0.001
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 2/127 (1%)
Query: 221 FITMEAVSTKPTPINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLI--DGYPRDKD 278
+ E S + IV L K + + + +
Sbjct: 40 LLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNN 99
Query: 279 QADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDAIKKRLIKANENDGPI 338
++ +KD + +L+ D P++V+ RL+KRG +SGR DD ++IKKR N +
Sbjct: 100 SWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLV 159
Query: 339 LQAFKSH 345
+ +
Sbjct: 160 IDHYNKF 166
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 40.0 bits (92), Expect = 2e-04
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQ 117
G G GK T + + + + +G + R ++ +
Sbjct: 10 GPSGAGKGTLCKAMAEAL-QWHLLDSGAIYRVLALAALHHHVDVASEDAL 58
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 38.9 bits (89), Expect = 2e-04
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVR 102
G PG+GK T A+ ++K P +I+ D ++ +
Sbjct: 7 TIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA 43
Score = 33.9 bits (76), Expect = 0.012
Identities = 18/145 (12%), Positives = 37/145 (25%), Gaps = 14/145 (9%)
Query: 201 GYPGAVIATTTFQLTSDNRLFI------TMEAVSTKPTPINLTNHSYFNLAGHDIVREVL 254
G PG+ +T + + N F +++ + +
Sbjct: 9 GCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTA 68
Query: 255 YKKMLQELAKAKLFLIDGYPRDKDQADQFVKDT---KEPAIILYLDAPDDVILARLVKRG 311
+L K +I + ++ + D P ++ R KR
Sbjct: 69 KS-ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR- 126
Query: 312 LTSGRPDDKEDAIKKRLIKANENDG 336
G D ++ E G
Sbjct: 127 ---GTKAVPIDVLRSMYKSMREYLG 148
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 36.9 bits (84), Expect = 0.002
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 68 GKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDVSYL 127
G +GK T A+ I F ++ TG + RA +E + L+
Sbjct: 10 GPASSGKSTVAKIIAKDF-GFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPIS 68
Query: 128 SSNNPYF 134
+
Sbjct: 69 FGRSETG 75
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 35.4 bits (81), Expect = 0.007
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 274 PRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKEDA 323
P+ + T I+ P+D + RL KR RP ++ D
Sbjct: 139 PQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKR----QRPGERLDL 184
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 35.3 bits (81), Expect = 0.009
Identities = 7/61 (11%), Positives = 15/61 (24%), Gaps = 6/61 (9%)
Query: 265 AKLFLIDGY--PRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLTSGRPDDKED 322
+ G + + I+ + + RL R R ++ D
Sbjct: 130 PAARYLLGDMSMCALMAMVATLPREPQGGNIVVTTLNVEEHIRRLRTR----ARIGEQID 185
Query: 323 A 323
Sbjct: 186 I 186
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 33.8 bits (76), Expect = 0.016
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 66 FTGKPGTGKETQAQNILSKFPE----AIHISTGDLLRAEVRTGN---TRGRNIEAIMKQG 118
TG PG GK T + I+ GD + A R + +++
Sbjct: 6 VTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQ 65
Query: 119 GLVPD 123
+
Sbjct: 66 KKLQI 70
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 33.5 bits (75), Expect = 0.019
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTG 104
TG G GK T + + ++ + +I GD++ V G
Sbjct: 7 ITGPAGVGKSTTCKRLAAQLDNSAYIE-GDIINHMVVGG 44
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 33.4 bits (76), Expect = 0.030
Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 8/130 (6%)
Query: 196 PDGDEGYPGAVIATTTFQLTSDNRLFITMEAVSTKPTPINLTNHSYFNLAGHDIV--REV 253
+GD A T FQ + I +S ++ R
Sbjct: 66 LNGDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHP 125
Query: 254 LYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAIILYLDAPDDVILARLVKRGLT 313
+ + L++ + + P + ++ L+R+ KR
Sbjct: 126 IASTICFPLSRYLVGDMS--PAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKR--- 180
Query: 314 SGRPDDKEDA 323
RP + +
Sbjct: 181 -ARPGETVNL 189
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 32.6 bits (73), Expect = 0.038
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTG 104
+G PG+GK T A+ + + D L ++ G
Sbjct: 9 LSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHG 47
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 30.0 bits (66), Expect = 0.28
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98
TG PGTGK + A+ I ++ H+ G L++
Sbjct: 10 ITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK 42
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.6 bits (65), Expect = 0.41
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 66 FTGKPGTGKETQAQNILSKFPEA----IHISTGDLLRAEVR 102
TG PG G T +Q + + +S G ++ +
Sbjct: 6 VTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK 46
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.5 bits (65), Expect = 0.41
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQ 117
+G G GK T + + + S R R G G++ + ++
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNP-RPGEEDGKDYYFVTRE 55
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 29.2 bits (64), Expect = 0.55
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQ 117
G G+GK A + ++ A + L G + ++
Sbjct: 11 LMGVSGSGKSAVA-SEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRK 61
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 29.1 bits (64), Expect = 0.72
Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNI 111
+G +GK+T A + + A+ ++ +
Sbjct: 6 LSGVKRSGKDTTA-DFIMSNYSAVKYQLAGPIKDALAYAWGVFAAN 50
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 28.6 bits (63), Expect = 0.88
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTG 104
TG +GK T A + + + L +R G
Sbjct: 29 LTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFG 67
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 27.6 bits (60), Expect = 1.8
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTG 104
G P GK + L+++ I + T + + R
Sbjct: 7 MVGLPARGKTYIS-KKLTRYLNFIGVPTREFNVGQYRRD 44
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 27.3 bits (59), Expect = 2.2
Identities = 10/48 (20%), Positives = 15/48 (31%)
Query: 67 TGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAI 114
TG PG GK T + G + G G ++ +
Sbjct: 7 TGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTL 54
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.4 bits (59), Expect = 2.7
Identities = 12/71 (16%), Positives = 23/71 (32%)
Query: 65 RFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPDV 124
G PG GK T A + + I +R++ ++ + G +
Sbjct: 56 MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 115
Query: 125 SYLSSNNPYFG 135
+ N +F
Sbjct: 116 EAQNLNGKHFV 126
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 26.8 bits (58), Expect = 2.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98
TG PG GK T + L+ +I+ GDL R
Sbjct: 9 LTGTPGVGKTTLGK-ELASKSGLKYINVGDLAR 40
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.2 bits (59), Expect = 3.2
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLR 98
G+PG+GK + I + + + D +
Sbjct: 37 LGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 69
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 26.5 bits (57), Expect = 3.9
Identities = 11/58 (18%), Positives = 14/58 (24%), Gaps = 1/58 (1%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGRNIEAIMKQGGLVPD 123
G GK + + S PE D L E + G V
Sbjct: 8 LNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI-EAMPLKMQSAEGGIEFDADGGVSI 64
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 26.4 bits (57), Expect = 4.3
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHIS 92
+G GTGK T + + +++P++ S
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYPDSFGFS 32
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 25.6 bits (56), Expect = 4.9
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 233 PINLTNHSYFNLAGHDIVREVLYKKMLQELAKAKLFLIDGYPRDKDQADQFVKDTKEPAI 292
I + N G I K +++ AK+ I G K+ P
Sbjct: 8 MIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIM-IRGKGSVKEGKVGRKDGQMLPGE 66
Query: 293 ILYL------DAPDDVILAR-----LVKRGLTSGRPDDKEDAIKKR 327
L + ++V A ++K+G+ + ++ ++K
Sbjct: 67 DEPLHALVTANTMENVKKAVEQIRNILKQGIE---TPEDQNDLRKM 109
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.1 bits (56), Expect = 5.7
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 66 FTGKPGTGKETQAQNILSKFPE 87
F GTGK T + ++
Sbjct: 7 FAAWSGTGKTTLLKKLIPALCA 28
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 25.6 bits (55), Expect = 8.5
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 66 FTGKPGTGKETQAQNILSKFPEAIHIS 92
G G G+ +++K P+
Sbjct: 8 LLGAHGVGRRHIKNTLITKHPDRFAYP 34
>d1rwha2 b.24.1.1 (A:645-757) Chondroitinase AC {Arthrobacter
aurescens [TaxId: 43663]}
Length = 113
Score = 24.8 bits (54), Expect = 9.3
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 12/68 (17%)
Query: 50 DPSQTGIPLQVEIPTRFTGKPGTGKETQAQNILSKFPEAIHISTGDLLRAEVRTGNTRGR 109
+P+Q L + +P G T + T G+
Sbjct: 58 EPTQKAAGLTLTLPEGTWSSVLEGAGTLG------------TDADGRSTLTLDTTGLSGK 105
Query: 110 NIEAIMKQ 117
+K+
Sbjct: 106 TKLIKLKR 113
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 25.4 bits (54), Expect = 9.7
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 66 FTGKPGTGKETQAQNILSKF 85
G +GK + + F
Sbjct: 12 ILGGESSGKSVLVNKLAAVF 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,346,048
Number of extensions: 63404
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 53
Length of query: 363
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,226,816
Effective search space: 339828032
Effective search space used: 339828032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)