BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11898
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 30 SGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83
SGR +EV+T QPG+QFYTGN++ + GK GA Y KH +C ETQN+P+AVN R
Sbjct: 267 SGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPR 321
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 24 RALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83
+A P+S +EV + +P QFYTG+++ A Y + E + +A+N +
Sbjct: 625 KAFHPDSNITLEVLSTEPTYQFYTGDFL-------SAGYEARQGFAIEPGRYIDAIN--Q 675
Query: 84 SSW 86
+W
Sbjct: 676 ENW 678
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 6 LVRMGTDRSF-LSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM 54
++ GT S + LE+ R LD + G +++ D+ GI+ YT + EM
Sbjct: 165 IIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM 214
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSV|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
pdb|1NSV|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
Length = 347
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 1 MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRY------MEVHTDQPGIQFYTGNYIPEM 54
M ++ LV+ G D FL + LD E R + V TDQP I +T N+
Sbjct: 233 MEQVQLVK-GIDHPFLLDQL----GLDKEQARLTLDDTSISVFTDQPSIVIFTANF---- 283
Query: 55 SGKKGATY-----TKHCAYCFETQNFPNAVNI 81
G G Y H FE Q P + I
Sbjct: 284 -GDLGTLYHEKKQVHHGGITFECQVSPGSEQI 314
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
pdb|1NSZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
Length = 347
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 1 MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRY------MEVHTDQPGIQFYTGNYIPEM 54
M ++ LV+ G D FL + LD E R + V TDQP I +T N+
Sbjct: 233 MEQVQLVK-GIDHPFLLDQL----GLDKEQARLTLDDTSISVFTDQPSIVIFTANF---- 283
Query: 55 SGKKGATY-----TKHCAYCFETQNFPNAVNI 81
G G Y H FE Q P + I
Sbjct: 284 -GDLGTLYHEKKQVHHGGITFECQVSPGSEQI 314
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
Length = 347
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 1 MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRY------MEVHTDQPGIQFYTGNYIPEM 54
M ++ LV+ G D FL + LD E R + V TDQP I +T N+
Sbjct: 233 MEQVQLVK-GIDHPFLLDQL----GLDKEQARLTLDDTSISVFTDQPSIVIFTANF---- 283
Query: 55 SGKKGATY-----TKHCAYCFETQNFPNAVNI 81
G G Y H FE Q P + I
Sbjct: 284 -GDLGTLYHEKKQVHHGGITFECQVSPGSEQI 314
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS4|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
pdb|1NS4|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
Length = 347
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 1 MIKIMLVRMGTDRSFLSLEFSFHRALDPESGRY------MEVHTDQPGIQFYTGNYIPEM 54
M ++ LV+ G D FL + LD E R + V TDQP I +T N+
Sbjct: 233 MEQVQLVK-GIDHPFLLDQL----GLDKEQARLTLDDTSISVFTDQPSIVIFTANF---- 283
Query: 55 SGKKGATY-----TKHCAYCFETQNFPNAVNI 81
G G Y H F+ Q P + I
Sbjct: 284 -GDLGTLYHEKKQVHHGGITFQCQVSPGSEQI 314
>pdb|3IG5|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+ And L-Glutamate
Length = 692
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 19 EFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNA 78
+ SFH PE GRYM T Y G+Y+ E++ +K ++ + Q+ N
Sbjct: 90 DVSFH----PEYGRYMLEATPASPYLNYVGSYV-EVNMQKRRAIAEYKLSEYARQDSKN- 143
Query: 79 VNIHRSSWGKIQTCGVLFIWSSADFVNCK 107
N+H S T V DF+N K
Sbjct: 144 -NLHVGSRSVPLTLTVFPRMGCPDFINIK 171
>pdb|3IG8|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+, L-Glutamate And Adp
pdb|3LVV|A Chain A, Bso-Inhibited Scgcl
pdb|3LVW|A Chain A, Glutathione-Inhibited Scgcl
Length = 692
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 19 EFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNA 78
+ SFH PE GRYM T Y G+Y+ E++ +K ++ + Q+ N
Sbjct: 90 DVSFH----PEYGRYMLEATPASPYLNYVGSYV-EVNMQKRRAIAEYKLSEYARQDSKN- 143
Query: 79 VNIHRSSWGKIQTCGVLFIWSSADFVNCK 107
N+H S T V DF+N K
Sbjct: 144 -NLHVGSRSVPLTLTVFPRMGCPDFINIK 171
>pdb|1YU4|A Chain A, Major Tropism Determinant U1 Variant
pdb|1YU4|B Chain B, Major Tropism Determinant U1 Variant
pdb|1YU4|C Chain C, Major Tropism Determinant U1 Variant
Length = 381
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 77 NAVNIHRSSWGKIQTCGVLFIWSS 100
+A NI S WG +Q G L+ W +
Sbjct: 288 SAWNIFTSKWGVVQASGCLWTWGN 311
>pdb|1YU1|A Chain A, Major Tropism Determinant P3c Variant
Length = 381
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 77 NAVNIHRSSWGKIQTCGVLFIWSS 100
+A NI S WG +Q G L+ W +
Sbjct: 288 SAWNIFTSKWGVVQASGCLWTWGN 311
>pdb|1YU0|A Chain A, Major Tropism Determinant P1 Variant
Length = 381
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 77 NAVNIHRSSWGKIQTCGVLFIWSS 100
+A NI S WG +Q G L+ W +
Sbjct: 288 SAWNIFTSKWGVVQASGCLWTWGN 311
>pdb|2IOU|A Chain A, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E).
pdb|2IOU|B Chain B, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E).
pdb|2IOU|C Chain C, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E).
pdb|2IOU|D Chain D, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E).
pdb|2IOU|E Chain E, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E).
pdb|2IOU|F Chain F, Major Tropism Determinant P1 (Mtd-P1) Variant Complexed
With Bordetella Brochiseptica Virulence Factor Pertactin
Extracellular Domain (Prn-E)
Length = 376
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 77 NAVNIHRSSWGKIQTCGVLFIWSS 100
+A NI S WG +Q G L+ W +
Sbjct: 284 SAWNIFTSKWGVVQASGCLWTWGN 307
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
pdb|1YGA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
Length = 342
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 24 RALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83
+A PES EV T +P + YTG+ + GK + + + + +A+N R
Sbjct: 267 KAYHPESHIKFEVSTTEPTVHLYTGD---NLCGK----FVPRSGFAVQQGRYVDAIN--R 317
Query: 84 SSW 86
W
Sbjct: 318 DEW 320
>pdb|1YU3|A Chain A, Major Tropism Determinant I1 Variant
Length = 381
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 77 NAVNIHRSSWGKIQTCGVLFIWSS 100
+A NI S WG +Q G L+ W +
Sbjct: 288 SAWNIFTSKWGVVQASGCLWTWGN 311
>pdb|1YU2|A Chain A, Major Tropism Determinant M1 Variant
Length = 381
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 77 NAVNIHRSSWGKIQTCGVLFIWSS 100
+A NI S WG +Q G L+ W +
Sbjct: 288 SAWNIFTSKWGVVQASGCLWTWGN 311
>pdb|1UVF|A Chain A, Solution Structure Of The Structured Part Of The 15th
Domain Of Lekti
Length = 61
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 41 PGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGKIQ 90
P I + + + G G TY C C E N N H S GK +
Sbjct: 14 PRIGYLCPKDLKPVCGDDGQTYNNPCMLCHE--NLIRQTNTHIRSTGKCE 61
>pdb|3C6Q|B Chain B, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|A Chain A, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|C Chain C, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
pdb|3C6Q|D Chain D, Apo And Ligand-Bound Form Of A Thermophilic GlucoseXYLOSE
BINDING Protein
Length = 311
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 28 PESGRYMEVHTDQPGIQFYTGNYIPEMSGKKG 59
P+SGRY+ + TD + G + E+ G KG
Sbjct: 93 PDSGRYVYIGTDNYQAGYTAGLIMKELLGGKG 124
>pdb|1UVG|A Chain A, Solution Structure Of The 15th Domain Of Lekti
Length = 78
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 41 PGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWGKIQ 90
P I + + + G G TY C C E N N H S GK +
Sbjct: 14 PRIGYLCPKDLKPVCGDDGQTYNNPCMLCHE--NLIRQTNTHIRSTGKCE 61
>pdb|2H3H|A Chain A, Crystal Structure Of The Liganded Form Of Thermotoga
Maritima Glucose Binding Protein
pdb|2H3H|B Chain B, Crystal Structure Of The Liganded Form Of Thermotoga
Maritima Glucose Binding Protein
Length = 313
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 28 PESGRYMEVHTDQPGIQFYTGNYIPEMSGKKG 59
P+SGRY+ + TD + G + E+ G KG
Sbjct: 93 PDSGRYVYIGTDNYQAGYTAGLIMKELLGGKG 124
>pdb|1CGI|I Chain I, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants
Of Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1HPT|A Chain A, Three-Dimensional Structure Of A Recombinant Variant Of
Human Pancreatic Secretory Trypsin Inhibitor (Kazal
Type)
Length = 56
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 31 GRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRS 84
GR + + + G + Y P + G G TY C CFE + ++ I +S
Sbjct: 4 GREAKCYNELNGCTY---EYRP-VCGTDGDTYPNECVLCFENRKRQTSILIQKS 53
>pdb|1CGJ|I Chain I, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants
Of Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
Length = 56
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 31 GRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRS 84
GR + + + G T Y P + G G TY C CFE + ++ I +S
Sbjct: 4 GREAKCYNELNGC---TLEYRP-VCGTDGDTYPNECVLCFENRKRQTSILIQKS 53
>pdb|2D7M|A Chain A, Solution Structure Of The 14th Filamin Domain From Human
Filamin C
Length = 115
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 26 LDPESGRYMEVHTDQPGIQFYTGNYIPEMSGK 57
LDPE G+ + + G YT +Y+P+MSG+
Sbjct: 51 LDPE-GKPKKANIRDNGDGTYTVSYLPDMSGR 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,923,751
Number of Sequences: 62578
Number of extensions: 156748
Number of successful extensions: 621
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 24
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)