BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11898
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1
Length = 342
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Query: 30 SGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVN 80
SGR +EV+T QPGIQFYTGN++ + GK GA Y KH +C ETQN+PNAVN
Sbjct: 265 SGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPKHSGFCLETQNWPNAVN 316
>sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1
Length = 342
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 30 SGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83
SGR +EV+T QPG+QFYTGN++ + GK GA Y KH +C ETQN+P+AVN R
Sbjct: 265 SGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPR 319
>sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1
Length = 342
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 30 SGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83
SGR +EV+T QPG+QFY GN++ + GK GA Y KH +C ETQN+P+AVN R
Sbjct: 265 SGRVLEVYTTQPGVQFYMGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVNQPR 319
>sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1
Length = 342
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 30 SGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVN 80
SGR +EV+T QPG+QFYTGN++ + GK G Y KH +C ETQN+P+AVN
Sbjct: 265 SGRILEVYTTQPGVQFYTGNFLDGTLKGKSGEVYPKHSGFCLETQNWPDAVN 316
>sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1
Length = 342
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 24 RALDPESGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVN 80
R SGR +EV+T QPG+QFYTGN++ + GK GA Y KH C ETQN+P++VN
Sbjct: 259 RVRHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGLCLETQNWPDSVN 316
>sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1
Length = 342
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Query: 30 SGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVN 80
SGR +EV+T QPG+QFYTGN++ + GK GA Y KH +C ETQ++P+AVN
Sbjct: 265 SGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAGYPKHSGFCLETQSWPDAVN 316
>sp|P05149|GALM_ACICA Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1
Length = 381
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 26 LDPESGRYMEVHTDQPGIQFYTGNY-IPEMSGKKGATYTKHCAYCFETQNFPNAVN 80
+DP+S R M+V T +P +Q YT ++ + + G G Y + A ETQ+FP++ N
Sbjct: 299 VDPKSKRTMQVLTTEPSVQMYTADHLLGNIVGANGVLYRQADALALETQHFPDSPN 354
>sp|P31765|GALM_HAEIN Aldose 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=galM PE=3 SV=2
Length = 340
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 28 PESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHR-SSW 86
P +EV T Q +Q YTGNY+ + G Y ETQ P+ N ++
Sbjct: 262 PTGDLSLEVRTSQAALQVYTGNYLAGTPTRNGELYADFSGIALETQCLPDTPNHPEWQNY 321
Query: 87 GKIQTCG 93
G IQ G
Sbjct: 322 GGIQKAG 328
>sp|Q3V3R4|ITA1_MOUSE Integrin alpha-1 OS=Mus musculus GN=Itga1 PE=2 SV=2
Length = 1179
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 98 WSSADFVNCKPYSSEKPIG 116
WSS+D VNC+P S E P+G
Sbjct: 1021 WSSSDNVNCRPRSLEDPLG 1039
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 16 LSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNF 75
L + +S + +L+P R T + G++ G + KG CA CFE Q F
Sbjct: 643 LEMNYSSNSSLEP---RGPNSSTSEVGLEVSPGAALDLRRTWKGGPEGPSCACCFEPQPF 699
Query: 76 PNAVNIHRSSWGKIQTCGVLFIWSSADFVNCKPYSSEKPIG 116
P I S+ G G + +C P S E +G
Sbjct: 700 PPGSGIETSAGGSSLFLGPRLL------EDCNPPSGEPQLG 734
>sp|P18614|ITA1_RAT Integrin alpha-1 OS=Rattus norvegicus GN=Itga1 PE=1 SV=1
Length = 1180
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 98 WSSADFVNCKPYSSEKPIG 116
WSS+D VNC+P S E P G
Sbjct: 1021 WSSSDNVNCRPRSLEDPFG 1039
>sp|P0A9C4|GALM_SHIFL Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1
Length = 346
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 34 MEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVN 80
++V+T P +QFY+GN++ + Y E++ P++ N
Sbjct: 272 LKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPN 318
>sp|P0A9C3|GALM_ECOLI Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1
SV=1
Length = 346
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 34 MEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVN 80
++V+T P +QFY+GN++ + Y E++ P++ N
Sbjct: 272 LKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPN 318
>sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GAL10 PE=1 SV=2
Length = 699
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 24 RALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83
+A P+S +EV + +P QFYTG+++ A Y + E + +A+N +
Sbjct: 625 KAFHPDSNITLEVLSTEPTYQFYTGDFL-------SAGYEARQGFAIEPGRYIDAIN--Q 675
Query: 84 SSW 86
+W
Sbjct: 676 ENW 678
>sp|Q9AL95|NROR_CLOAB NADH-rubredoxin oxidoreductase OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=nroR PE=1 SV=1
Length = 379
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 6 LVRMGTDRSF-LSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM 54
++ GT S + LE+ R LD + G +++ D+ GI+ YT + EM
Sbjct: 159 IIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM 208
>sp|A6UTB1|HIS7_META3 Imidazoleglycerol-phosphate dehydratase OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=hisB PE=3 SV=1
Length = 190
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 22 FHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNI 81
F A+ P V D G F GNYIP+ K G T++ + FE+ +NI
Sbjct: 89 FGHAIVPMDEARAMVSIDLGGRPFVVGNYIPKRD-KVGELSTENIVHFFESMANNGNMNI 147
Query: 82 HRSSWGK 88
H G+
Sbjct: 148 HFEVIGE 154
>sp|P09656|ISK3_RAT Serine protease inhibitor Kazal-type 3 OS=Rattus norvegicus
GN=Spink3 PE=1 SV=2
Length = 79
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 49 NYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83
+Y P + G G TY C CFE + F ++ I R
Sbjct: 42 DYDP-VCGTDGKTYANECILCFENRKFGTSIRIQR 75
>sp|O22241|AROD4_ARATH Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana
GN=ADT4 PE=1 SV=1
Length = 424
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 66 CAYCFETQNFPNAVNIHRSSWGKIQTCGVL 95
C Y E+ +FPN V++ RS W +C +L
Sbjct: 35 CGYRSESFSFPNGVSVSRSDWQ--SSCAIL 62
>sp|P09655|ISK1_RAT Pancreatic secretory trypsin inhibitor OS=Rattus norvegicus
GN=Spink1 PE=1 SV=2
Length = 79
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 54 MSGKKGATYTKHCAYCFETQNFPNAVNIHR 83
+ G G TY C+ CFE + F +++I R
Sbjct: 46 VCGTNGITYPSECSLCFENRKFGTSIHIQR 75
>sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus tropicalis GN=zfr PE=2
SV=1
Length = 1065
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 26 LDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIH 82
+DP S + Q +Q +Y+ E+ +G HC C + N PNA +H
Sbjct: 535 IDPMSEAAQTLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMH 591
>sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus laevis GN=zfr PE=2 SV=1
Length = 1054
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 26 LDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIH 82
+DP S + Q +Q +Y+ E+ +G HC C + N PNA +H
Sbjct: 524 IDPMSEAAQTLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMH 580
>sp|A6NNF4|ZN726_HUMAN Zinc finger protein 726 OS=Homo sapiens GN=ZNF726 PE=2 SV=3
Length = 738
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 66 CAYCFETQNFPNAVNIH-RSSWG----KIQTCGVLFIWSSADFVNCKPYSSEKP 114
C C + + P+A+ IH R G K + CG F+WSS + + +S EKP
Sbjct: 287 CEECGKAFSQPSALTIHKRMHIGEKPYKCEECGKAFVWSSTLTRHKRLHSGEKP 340
>sp|Q3ZCC3|TRAF6_BOVIN TNF receptor-associated factor 6 OS=Bos taurus GN=TRAF6 PE=2 SV=1
Length = 542
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 28 PESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQN-----FPNAVNIH 82
P SGR+ EVH Q IQ G + + + T ETQ+ +
Sbjct: 304 PSSGRHSEVHNFQETIQQLEGRLVRQDHQIRELTAK------METQSMYVNELKRTIRTL 357
Query: 83 RSSWGKI--QTCGVLFIWSSADF-VNCKPYSSEKPI 115
+I Q C ++IW +F ++ K EKP+
Sbjct: 358 EDKVAEIEAQQCNGIYIWKIGNFGMHLKSQEEEKPV 393
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,477,983
Number of Sequences: 539616
Number of extensions: 1876648
Number of successful extensions: 3165
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3130
Number of HSP's gapped (non-prelim): 39
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)