Query psy11898
Match_columns 124
No_of_seqs 135 out of 1032
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 21:45:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00485 aldolase 1-epimerase; 100.0 3.3E-31 7.1E-36 220.8 12.5 99 9-107 265-371 (376)
2 KOG1604|consensus 100.0 6.4E-30 1.4E-34 209.6 10.5 96 10-106 249-351 (353)
3 PRK11055 galM galactose-1-epim 100.0 2.1E-29 4.6E-34 207.0 12.6 97 9-106 238-341 (342)
4 TIGR02636 galM_Leloir galactos 99.9 1.9E-27 4.2E-32 194.3 11.9 95 10-105 234-335 (335)
5 PLN00194 aldose 1-epimerase; P 99.9 2E-26 4.4E-31 188.5 12.7 96 10-106 236-337 (337)
6 cd09019 galactose_mutarotase_l 99.9 2.8E-23 6.1E-28 168.4 12.0 95 9-104 227-326 (326)
7 COG2017 GalM Galactose mutarot 99.8 6.1E-19 1.3E-23 143.0 10.8 85 10-106 218-307 (308)
8 PRK15172 putative aldose-1-epi 99.6 7.4E-15 1.6E-19 118.4 11.5 75 9-97 214-290 (300)
9 cd09022 Aldose_epim_Ec_YihR Al 99.4 7.9E-13 1.7E-17 104.9 10.2 78 9-97 194-279 (284)
10 cd09021 Aldose_epim_Ec_YphB al 99.2 1.1E-10 2.5E-15 91.9 9.5 78 9-101 191-271 (273)
11 PF01263 Aldose_epim: Aldose 1 99.1 2E-10 4.2E-15 90.4 7.0 85 10-103 214-300 (300)
12 cd01081 Aldose_epim aldose 1-e 99.1 1.1E-09 2.3E-14 85.0 9.3 73 9-93 199-277 (284)
13 cd09025 Aldose_epim_Slr1438 Al 98.5 1.2E-06 2.5E-11 69.5 8.8 71 9-97 192-265 (271)
14 cd09024 Aldose_epim_lacX Aldos 96.8 0.018 3.9E-07 46.0 10.4 73 12-98 201-282 (288)
15 cd09023 Aldose_epim_Ec_c4013 A 75.4 5.6 0.00012 31.7 4.5 74 11-97 199-280 (284)
16 cd09020 D-hex-6-P-epi_like D-h 74.0 42 0.00091 26.5 9.4 79 10-100 185-266 (269)
17 PF06510 DUF1102: Protein of u 67.1 25 0.00054 26.4 6.0 38 11-52 53-92 (146)
18 KOG2540|consensus 63.6 9.1 0.0002 30.9 3.3 45 31-75 154-209 (269)
19 COG3175 COX11 Cytochrome oxida 54.8 14 0.00031 28.8 3.0 45 31-75 84-139 (195)
20 PTZ00128 cytochrome c oxidase 45.5 14 0.00031 29.6 1.8 45 32-76 130-185 (232)
21 PF04442 CtaG_Cox11: Cytochrom 43.1 10 0.00022 28.4 0.6 45 31-75 58-113 (152)
22 PRK05089 cytochrome C oxidase 41.3 20 0.00043 27.8 2.0 45 32-76 86-141 (188)
23 cd02413 40S_S3_KH K homology R 29.6 82 0.0018 20.8 3.3 18 28-45 28-45 (81)
24 PHA02151 hypothetical protein 23.0 1.1E+02 0.0024 23.7 3.2 48 23-78 107-154 (217)
No 1
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.97 E-value=3.3e-31 Score=220.76 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=89.7
Q ss_pred CCceeeeecCC------ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCcc-CCCCCcccCCceeEEEccCCCCCCCCC
Q psy11898 9 MGTDRSFLSLE------FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM-SGKKGATYTKHCAYCFETQNFPNAVNI 81 (124)
Q Consensus 9 ~GyDh~Fvl~~------~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~-~g~~g~~~~~~~GiclE~Q~~PDAiN~ 81 (124)
+||||||+|+. +++|+|++|.|||+|+|+||||||||||||++++. .+++|+.|.+|+|||||||+||||+||
T Consensus 265 ~G~Dh~fvl~~~~~~~~~~~a~l~~p~sg~~l~v~T~~P~~qiYT~n~l~~~~~~~~g~~~~~~~giclE~Q~~PDa~n~ 344 (376)
T PTZ00485 265 CGYDHPLAIDGWEKGKLMLHAEAKSPVTNICMKVYSTFPCMWVYTANNKPLPASGGPGQRYARWTGMGLEPQYFPDVANH 344 (376)
T ss_pred CCCCcceEECCCCCccccEEEEEEcCCCCCEEEEEECCCEEEEECCCCCCccccCCCCcCcCCCCEEEEeccCCCCcccc
Confidence 39999999942 56899999999999999999999999999999763 578889999999999999999999999
Q ss_pred -CCCCCceeecCCceEEEEEEEEEEee
Q psy11898 82 -HRSSWGKIQTCGVLFIWSSADFVNCK 107 (124)
Q Consensus 82 -p~~~~~~l~~~~~~y~~~t~y~f~~~ 107 (124)
|+|++.+|+++++.|.++|+|+|+..
T Consensus 345 ~~~fp~~vl~pge~~~~~~t~y~f~~~ 371 (376)
T PTZ00485 345 YPKYPSCIVRRGERRFTETILNEFTVE 371 (376)
T ss_pred cCCCCCeEECCCCeEEEEEEEEEEEee
Confidence 99999888888855999999999654
No 2
>KOG1604|consensus
Probab=99.96 E-value=6.4e-30 Score=209.56 Aligned_cols=96 Identities=39% Similarity=0.648 Sum_probs=91.9
Q ss_pred CceeeeecC-------CceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCCCCCCCCC
Q psy11898 10 GTDRSFLSL-------EFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIH 82 (124)
Q Consensus 10 GyDh~Fvl~-------~~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~PDAiN~p 82 (124)
|||++|+++ .+++|++++|+|||.|||+|+||+|||||||++++..+++|..|.+|+|+|||+|++|||+||+
T Consensus 249 g~d~n~~~~~~~~~~~l~~v~k~~hp~Sgr~lEv~TnqPgvqfYTgn~~~~~~gk~g~~y~k~g~~cletq~~pda~n~~ 328 (353)
T KOG1604|consen 249 GYDINYVLDGSVPPNKLRKVAKAVHPKSGRKLEVSTNQPGVQFYTGNFLPDIKGKKGAVYPKHGGLCLETQYFPDAVNHP 328 (353)
T ss_pred CCCcceEEccCCCCcccEEEEEEEcCccCcEEEEEeCCCcEEEEeccccccccCCCceEeeccceEEeecccCccccccC
Confidence 999999974 3689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecCCceEEEEEEEEEEe
Q psy11898 83 RSSWGKIQTCGVLFIWSSADFVNC 106 (124)
Q Consensus 83 ~~~~~~l~~~~~~y~~~t~y~f~~ 106 (124)
+|++.+|++|| .|.|+++|+|+.
T Consensus 329 ~fp~v~l~pGE-~Y~h~~~y~Fsv 351 (353)
T KOG1604|consen 329 NFPSVILRPGE-TYTHETVYKFSV 351 (353)
T ss_pred CCCceEecCCC-eeeeEEEEEEec
Confidence 99998888888 999999999985
No 3
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.96 E-value=2.1e-29 Score=206.98 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=87.4
Q ss_pred CCceeeeecCC-----ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCCCCCCCCCC
Q psy11898 9 MGTDRSFLSLE-----FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83 (124)
Q Consensus 9 ~GyDh~Fvl~~-----~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~PDAiN~p~ 83 (124)
.||||||+++. +++|+|++++|||+|+|+||+|+|||||||++++..+++|+.|.+|+|||||||.+|||+||++
T Consensus 238 ~g~D~~fvl~~~~~~~~~~a~l~~~~sg~~l~v~t~~p~lqvYT~n~~~~~~~~~g~~~~~~~gialE~q~~Pda~n~~~ 317 (342)
T PRK11055 238 KGYDHAFLLQAKGDGKKPAAHLWSPDEKLQMKVYTTAPALQFYSGNFLAGTPSRGGGPYADYAGLALESQFLPDSPNHPE 317 (342)
T ss_pred CCcceEEEECCCCcccceeEEEEcCCCCeEEEEEcCCCEEEEecCCccCCccCCCCcEeCCCceEEEEcccCCCcccccC
Confidence 39999999852 5689999999999999999999999999999976457789999999999999999999999999
Q ss_pred CC--CceeecCCceEEEEEEEEEEe
Q psy11898 84 SS--WGKIQTCGVLFIWSSADFVNC 106 (124)
Q Consensus 84 ~~--~~~l~~~~~~y~~~t~y~f~~ 106 (124)
|+ +.+|++++ .|+++|+|+|+.
T Consensus 318 f~~~~~~L~pg~-~y~~~t~y~f~~ 341 (342)
T PRK11055 318 WPQPDCILKPGE-EYRSLTEYQFIA 341 (342)
T ss_pred CCCCCeEECCCC-EEEEEEEEEEEe
Confidence 97 66666666 999999999975
No 4
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.95 E-value=1.9e-27 Score=194.27 Aligned_cols=95 Identities=24% Similarity=0.330 Sum_probs=85.8
Q ss_pred CceeeeecCC-----ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCCCCCCCCCCC
Q psy11898 10 GTDRSFLSLE-----FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRS 84 (124)
Q Consensus 10 GyDh~Fvl~~-----~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~PDAiN~p~~ 84 (124)
||||||+++. +.+|+|.++.|||+|+|+||+|+|||||+|+++...+++|+.|.++.|||||||.+||++||++|
T Consensus 234 g~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t~~p~~~vyT~~~~~~~~~~~g~~~~~~~gialE~q~~pd~~n~~~~ 313 (335)
T TIGR02636 234 GYDHAFLLNGERLDGKPAAILTSPDEDLSLEVFTTQPALQIYTGNFLAGTPNRGGKKYVDHAGLALETQFLPDSPNHPEW 313 (335)
T ss_pred CcceEEEECCCCCCCceeEEEEcCCCCcEEEEecCCCEEEEecCCCcCCccCCCCcEeCCCcEEEEecccCCCcccccCC
Confidence 9999999853 56899999999999999999999999999999765677889999999999999999999999999
Q ss_pred CCce--eecCCceEEEEEEEEEE
Q psy11898 85 SWGK--IQTCGVLFIWSSADFVN 105 (124)
Q Consensus 85 ~~~~--l~~~~~~y~~~t~y~f~ 105 (124)
+..+ |.+++ .|.++|+|+|+
T Consensus 314 ~~~~~~L~pge-~~~~~t~y~f~ 335 (335)
T TIGR02636 314 GDISCILSPGQ-EYQHQTRYQFI 335 (335)
T ss_pred CCCceEECCCC-EEEEEEEEEEC
Confidence 9753 55555 99999999995
No 5
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.94 E-value=2e-26 Score=188.54 Aligned_cols=96 Identities=34% Similarity=0.551 Sum_probs=87.1
Q ss_pred CceeeeecCC------ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCCCCCCCCCC
Q psy11898 10 GTDRSFLSLE------FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83 (124)
Q Consensus 10 GyDh~Fvl~~------~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~PDAiN~p~ 83 (124)
||||||+++. +.+|+|.++.|||+|+|+||+|+|||||+|++++..+++|..+.+++|||||||.+|||+|+++
T Consensus 236 g~Dh~f~l~~~~~~~~~~~a~l~~~~sg~~l~v~t~~p~v~vyT~n~~~~~~~~~~~~~~~~~~i~lEpq~~pda~n~~~ 315 (337)
T PLN00194 236 GYDHNYVLDGEEKEGLKKAAKVKDPKSGRVLELWTNAPGMQFYTSNYVNGVKGKGGAVYGKHAGLCLETQGFPDAVNQPN 315 (337)
T ss_pred CcceEEEECCCCcccceeeEEEEcCCCCCEEEEEeCCCEEEEECCCCCCCccCCCCCEeCCCCEEEEeccCCCCcccCCC
Confidence 9999999842 4589999999999999999999999999999986677888889999999999999999999999
Q ss_pred CCCceeecCCceEEEEEEEEEEe
Q psy11898 84 SSWGKIQTCGVLFIWSSADFVNC 106 (124)
Q Consensus 84 ~~~~~l~~~~~~y~~~t~y~f~~ 106 (124)
|+..+|.+++ .|.++|+|+|++
T Consensus 316 ~~~~~L~pge-~~~~~t~y~f~~ 337 (337)
T PLN00194 316 FPSVVVNPGE-KYKHTMLFEFSA 337 (337)
T ss_pred CCCeEECCCC-EEEEEEEEEEeC
Confidence 9876666666 999999999974
No 6
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=99.90 E-value=2.8e-23 Score=168.45 Aligned_cols=95 Identities=35% Similarity=0.538 Sum_probs=86.0
Q ss_pred CCceeeeecCC-----ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCCCCCCCCCC
Q psy11898 9 MGTDRSFLSLE-----FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHR 83 (124)
Q Consensus 9 ~GyDh~Fvl~~-----~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~PDAiN~p~ 83 (124)
.|+||||+++. +.+|+|.++.+|++|+|+||+|++||||+|.++....++|+.+.++.|||||||.+|||+|+++
T Consensus 227 ~~~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t~~p~~~vyT~~~~~~~~~~~~~~~~~~~~iclEpq~~pdA~n~~~ 306 (326)
T cd09019 227 GGYDHNFVLDKGGGKLRPAARLTSPESGRKLEVYTTQPGVQFYTGNFLDGTPGGGGKVYGKRSGFCLETQHFPDAPNHPN 306 (326)
T ss_pred CCcceEEEECCCCCccceeEEEEcCCCCcEEEEecCCCEEEEEeCCCCCcccCCCCcEeCCCCEEEEeccCCCCcccccC
Confidence 49999999753 4689999999999999999999999999999977666788999999999999999999999999
Q ss_pred CCCceeecCCceEEEEEEEEE
Q psy11898 84 SSWGKIQTCGVLFIWSSADFV 104 (124)
Q Consensus 84 ~~~~~l~~~~~~y~~~t~y~f 104 (124)
|+..+|.+++ +|+++++|+|
T Consensus 307 ~g~~~L~pge-~~~~~~~y~f 326 (326)
T cd09019 307 FPSIILRPGE-TYRHTTVYRF 326 (326)
T ss_pred CCCeEECCCC-EEEEEEEEEC
Confidence 8877777776 9999999987
No 7
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.79 E-value=6.1e-19 Score=143.04 Aligned_cols=85 Identities=28% Similarity=0.394 Sum_probs=77.9
Q ss_pred CceeeeecCC----ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCC-CCCCCCCCCC
Q psy11898 10 GTDRSFLSLE----FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQN-FPNAVNIHRS 84 (124)
Q Consensus 10 GyDh~Fvl~~----~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~-~PDAiN~p~~ 84 (124)
.|||+|+++. +..|++.++.++++|+|.||+|++|+||+|.++ .++|||||||. +|||+||++|
T Consensus 218 ~~d~~f~~~~~~~~~~~a~l~~~~~~~~l~v~t~~p~~~~yt~~~~~-----------~~~~~clEp~~~~pdA~n~~~~ 286 (308)
T COG2017 218 PYDHAFLLNGARGLKPAARLYDPDSGLSLEVETDEPFVQLYTGNFLA-----------GRDGLCLEPQSGLPDAFNHPGF 286 (308)
T ss_pred ccccceeeccccCCcceEEEEcCCCCeEEEEEeCCCeEEEEeCCCCC-----------cCCeEEeeeccCCCCcCCCCCc
Confidence 4799999875 679999999999999999999999999999875 68899999999 9999999999
Q ss_pred CCceeecCCceEEEEEEEEEEe
Q psy11898 85 SWGKIQTCGVLFIWSSADFVNC 106 (124)
Q Consensus 85 ~~~~l~~~~~~y~~~t~y~f~~ 106 (124)
+..+|.+|+ .|+..++|+|+.
T Consensus 287 ~~~~L~pGe-~~~~~~~~~~~~ 307 (308)
T COG2017 287 GLIVLEPGE-TYSAETRFRFES 307 (308)
T ss_pred ccceeCCCC-EEEEEEEEEEec
Confidence 998877777 999999999974
No 8
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=99.61 E-value=7.4e-15 Score=118.40 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=63.1
Q ss_pred CCceeeeecCC-ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCCC-CCCCCCCCCC
Q psy11898 9 MGTDRSFLSLE-FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFP-NAVNIHRSSW 86 (124)
Q Consensus 9 ~GyDh~Fvl~~-~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~P-DAiN~p~~~~ 86 (124)
.||||+|++.. ..+|+|.++.+|++|++.|++|++||||++.++ ++|||||||.+| ||+|. +++.
T Consensus 214 ~~~D~~f~~~~~~~~~~l~~~~~g~~l~~~~~~~~~~vyt~~~~~------------~~~~ciEp~t~p~dA~n~-~~g~ 280 (300)
T PRK15172 214 TKIDHTFKTANDLWEVRITHPQQALSVSLCSDQPWLQIYSGEKLQ------------RQGLAVEPMSCPPNAFNS-GIDL 280 (300)
T ss_pred CCccCEEEcCCCceEEEEEeCCCCeEEEEEcCCCEEEEECCCCCC------------CCEEEEeCCCCCCCCCCC-CCCC
Confidence 48999999754 357899999999999999999999999998642 689999999999 99995 5666
Q ss_pred ceeecCCceEE
Q psy11898 87 GKIQTCGVLFI 97 (124)
Q Consensus 87 ~~l~~~~~~y~ 97 (124)
.+|.|++ .++
T Consensus 281 ~~L~pge-~~~ 290 (300)
T PRK15172 281 LLLEPGK-THR 290 (300)
T ss_pred EEECCCC-EEE
Confidence 6677777 544
No 9
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.44 E-value=7.9e-13 Score=104.88 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=63.0
Q ss_pred CCceeeeecCC-----ceeEEEEcCCCCcEEEEEcCCC--eEEEEcCCCCCccCCCCCcccCCceeEEEccCCC-CCCCC
Q psy11898 9 MGTDRSFLSLE-----FSFHRALDPESGRYMEVHTDQP--GIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNF-PNAVN 80 (124)
Q Consensus 9 ~GyDh~Fvl~~-----~~~a~L~s~~SG~~L~v~TdqP--~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~-PDAiN 80 (124)
.|+||+|++.. ...|+|.++.+ ++|+|.||++ ++||||++.++. +.++.+||||||.. |||+|
T Consensus 194 ~~~D~~f~~~~~~~~~~~~~~l~~~~~-~~l~l~~~~~~~~~~vyt~~~~~~--------~~~~~~iclEP~~~~~da~n 264 (284)
T cd09022 194 TALDTAFTDLTRDADGRARARLTGPDG-RGVELWADESFPWVQVFTADTLPP--------PGRRRGLAVEPMTCPPNAFN 264 (284)
T ss_pred ccccccccccccCCCCcEEEEEECCCC-CEEEEEECCCCCEEEEECCCCCCC--------CCCCCEEEEccCCCCCCcCc
Confidence 38999999742 34889999988 9999999885 999999997753 25689999999987 69999
Q ss_pred CCCCCCceeecCCceEE
Q psy11898 81 IHRSSWGKIQTCGVLFI 97 (124)
Q Consensus 81 ~p~~~~~~l~~~~~~y~ 97 (124)
+ +++..+|.+++ .|+
T Consensus 265 ~-~~~~~~L~pge-~~~ 279 (284)
T cd09022 265 S-GTDLIVLAPGE-THT 279 (284)
T ss_pred C-CCCcEEECCCC-EEE
Confidence 8 45665666666 665
No 10
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.20 E-value=1.1e-10 Score=91.94 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=62.8
Q ss_pred CCceeeeecCCceeEEEEcCCCCcEEEEEcCC--CeEEEEcCCCCCccCCCCCcccCCceeEEEccCC-CCCCCCCCCCC
Q psy11898 9 MGTDRSFLSLEFSFHRALDPESGRYMEVHTDQ--PGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQN-FPNAVNIHRSS 85 (124)
Q Consensus 9 ~GyDh~Fvl~~~~~a~L~s~~SG~~L~v~Tdq--P~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~-~PDAiN~p~~~ 85 (124)
.++||+|.... ..+.+.++.+|++|+|.++. |.+||||.+ .+.+||+|||. +|||+|+++++
T Consensus 191 ~~~D~~f~~~~-~~~~l~~~~~~~~i~v~~~~~~~~~vvwtp~--------------~~~~vCvEP~~~~~da~~~~~~~ 255 (273)
T cd09021 191 RWIDNCFTGWD-GAALIWPPERGLALTIEADAPFSHLVVYRPP--------------GEDFFCLEPVSHAPDAHHGPGDP 255 (273)
T ss_pred ccccccccCCC-cceEEecCCCCcEEEEecCCCCCEEEEEcCC--------------CCCeEEEccccCCCCccCCcCCC
Confidence 38999998543 46789999999999999999 999999976 36799999996 99999998876
Q ss_pred CceeecCCceEEEEEE
Q psy11898 86 WGKIQTCGVLFIWSSA 101 (124)
Q Consensus 86 ~~~l~~~~~~y~~~t~ 101 (124)
..+.+.+++.|+..++
T Consensus 256 ~~~~L~pge~~~~~~~ 271 (273)
T cd09021 256 GLRVLAPGESLSLSMR 271 (273)
T ss_pred CcEEeCCCCcEEEEEE
Confidence 5444545547775554
No 11
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=99.11 E-value=2e-10 Score=90.41 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=73.0
Q ss_pred CceeeeecCC--ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCCCCCCCCCCCCCc
Q psy11898 10 GTDRSFLSLE--FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVNIHRSSWG 87 (124)
Q Consensus 10 GyDh~Fvl~~--~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~PDAiN~p~~~~~ 87 (124)
++||+|++.. ..++.+.++.+++.|++.|++|.+||||.+... .+....++|+|++.+|++++++.++..
T Consensus 214 ~~D~~f~~~~~~~~~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (300)
T PF01263_consen 214 GLDHCFVLDPPGRPVIRLRSPGSGISLEFSTSFPWLVVWTPGFDP--------KYICIEPIAIEPDFVPDEANNPGKGLI 285 (300)
T ss_dssp CEEEEEEESSSSEEEEEEETTTEEEEEEEEESSSEEEEEEETTSS--------TEETTCEEECEEESECECCCECCHEGE
T ss_pred ccceEEEcCCCccEEEEeecccceEEEEecCCCCcEEEECCCCcc--------cccCCcccccCCCeeecccccCCCCCE
Confidence 6999999865 788899999999999999999999999987653 467889999999999999999998754
Q ss_pred eeecCCceEEEEEEEE
Q psy11898 88 KIQTCGVLFIWSSADF 103 (124)
Q Consensus 88 ~l~~~~~~y~~~t~y~ 103 (124)
+|.+|+ .|+..++|.
T Consensus 286 ~L~pGe-~~~~~~~~~ 300 (300)
T PF01263_consen 286 VLAPGE-SYSFSTRYT 300 (300)
T ss_dssp EEETTS-EEEEEEEEE
T ss_pred EECCCC-EEEEEEEEC
Confidence 555555 999888874
No 12
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.06 E-value=1.1e-09 Score=84.96 Aligned_cols=73 Identities=25% Similarity=0.226 Sum_probs=61.4
Q ss_pred CCceeeeecCC----ceeEEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCC-CCCCCCCC
Q psy11898 9 MGTDRSFLSLE----FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNF-PNAVNIHR 83 (124)
Q Consensus 9 ~GyDh~Fvl~~----~~~a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~-PDAiN~p~ 83 (124)
.++||+|++.. ...|+|.++.++++|++.+++|.+|+||++. ..+.++|||||.. |||.++++
T Consensus 199 ~~~D~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~v~t~~~------------~~~~~~ciEP~t~~~da~~~~~ 266 (284)
T cd01081 199 GELDDCFLLLGNDAGTAEARLEDPDSRISVEFETGWPFWQVYTGDG------------GRRGSVAIEPMTSAPDAFFNNN 266 (284)
T ss_pred cccccccccCcCCCCeeEEEEECCCCeEEEEEeCCCCEEEEECCCC------------CcCCEEEEccccCCCCCCCCCC
Confidence 48999999753 3588999999999999999999999999873 3467999999998 79988888
Q ss_pred CCCceee-cCC
Q psy11898 84 SSWGKIQ-TCG 93 (124)
Q Consensus 84 ~~~~~l~-~~~ 93 (124)
+...+|. +++
T Consensus 267 ~~~~~L~~pge 277 (284)
T cd01081 267 GGLITLKPPGE 277 (284)
T ss_pred CceEEeCCCCc
Confidence 7766777 665
No 13
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=98.45 E-value=1.2e-06 Score=69.54 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCceeeeecCCceeEEEEcCCCCcEEEEEcCC--CeEEEEcCCCCCccCCCCCcccCCceeEEEcc-CCCCCCCCCCCCC
Q psy11898 9 MGTDRSFLSLEFSFHRALDPESGRYMEVHTDQ--PGIQFYTGNYIPEMSGKKGATYTKHCAYCFET-QNFPNAVNIHRSS 85 (124)
Q Consensus 9 ~GyDh~Fvl~~~~~a~L~s~~SG~~L~v~Tdq--P~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~-Q~~PDAiN~p~~~ 85 (124)
.++||+|.... .+.|.++.+|++|.|.++. +.+|||+.. ....||+|| +..|||+|... .
T Consensus 192 ~~~D~~y~~~~--~~~l~~~~~~~~i~l~~~~~~~~~vvw~p~--------------~~~~vCvEp~t~~~nA~n~~~-~ 254 (271)
T cd09025 192 EGVDLLFRPLG--PASLTDGARGLKITLDHDEPFSNLVVWTDK--------------GKDFVCLEPWTGPRNALNTGE-R 254 (271)
T ss_pred cccchhhccCC--ceEEEecCCCEEEEEecCCCcceEEEecCC--------------CCcEEEEecCCCCccccCcCC-c
Confidence 37999998543 7899999999999999885 599999952 246899999 68999998664 4
Q ss_pred CceeecCCceEE
Q psy11898 86 WGKIQTCGVLFI 97 (124)
Q Consensus 86 ~~~l~~~~~~y~ 97 (124)
..+|.|++ .++
T Consensus 255 ~~~L~PGe-~~~ 265 (271)
T cd09025 255 LLLLPPGE-TEE 265 (271)
T ss_pred cEEECCCC-EEE
Confidence 55666666 444
No 14
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=96.83 E-value=0.018 Score=45.95 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=46.2
Q ss_pred eeeeecCC--ceeEEEEcCCCCcEEEEE-cCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCC-CCCCCCCCC-CC-
Q psy11898 12 DRSFLSLE--FSFHRALDPESGRYMEVH-TDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQN-FPNAVNIHR-SS- 85 (124)
Q Consensus 12 Dh~Fvl~~--~~~a~L~s~~SG~~L~v~-TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~-~PDAiN~p~-~~- 85 (124)
|++|++.. ...+.|.++++|+.++|. .+.|-++|||... ....||+||+. .|||.|... |.
T Consensus 201 ~~~~~~~~~~~~~~~l~~~~~~~~v~l~~~~~~~l~vwt~~~-------------~~~~iciEP~t~~~da~~~~~~~~~ 267 (288)
T cd09024 201 DDALIFDNLKSREVTLKSKKTGHGVTVDFDDFPYLGIWSKPN-------------GAPFVCIEPWYGLADSVGFDGDLED 267 (288)
T ss_pred CCEEEEcCCCccEEEEEcCCCCCEEEEEeCCCCEEEEeCCCC-------------CCCEEEEcCCCCCCCcCCCCccccc
Confidence 46666542 246889998765555553 3489999998641 24579999985 569987532 32
Q ss_pred ---CceeecCCceEEE
Q psy11898 86 ---WGKIQTCGVLFIW 98 (124)
Q Consensus 86 ---~~~l~~~~~~y~~ 98 (124)
-..|.|++ .++.
T Consensus 268 ~~gl~~L~PGe-~~~~ 282 (288)
T cd09024 268 KEGINKLEPGE-SFEA 282 (288)
T ss_pred cCCCEEeCCCC-EEEE
Confidence 22444555 6653
No 15
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=75.39 E-value=5.6 Score=31.71 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=44.3
Q ss_pred ceeeeecC--CceeEEEEcCCCC--cEEEEEc-CCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCC-CCCCCCCCC
Q psy11898 11 TDRSFLSL--EFSFHRALDPESG--RYMEVHT-DQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNF-PNAVNIHRS 84 (124)
Q Consensus 11 yDh~Fvl~--~~~~a~L~s~~SG--~~L~v~T-dqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~-PDAiN~p~~ 84 (124)
|+|.+..+ ....+.|.++++| +.+...+ +.|.+++|++..- ...++||||+.- ||+.+...-
T Consensus 199 ~~~~~~~d~~g~~~~~l~~~~~g~~~~l~~~~~~~p~~~~W~~~~~------------~~y~lalEP~T~~p~~~~~~~~ 266 (284)
T cd09023 199 YFHEPAADEDGRAPAALVNPRLGLGVEVRFDTDTLPYLTQWKNTGA------------GAYVLGLEPATNFPNGRAFERE 266 (284)
T ss_pred EEEeccccCCCceeEEEEcCCCCcEEEEEEehhhCCHHHHHhccCC------------CccEEEEccccCCCcchHHHHH
Confidence 45554322 1346889999987 5555555 4799999986410 234899999987 566443111
Q ss_pred --CCceeecCCceEE
Q psy11898 85 --SWGKIQTCGVLFI 97 (124)
Q Consensus 85 --~~~~l~~~~~~y~ 97 (124)
.-..|.|++ ..+
T Consensus 267 ~g~l~~L~PGE-s~~ 280 (284)
T cd09023 267 QGELPTLAPGE-SRS 280 (284)
T ss_pred CCCcceECCCC-eEE
Confidence 123556665 444
No 16
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=73.97 E-value=42 Score=26.49 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=45.2
Q ss_pred CceeeeecCCceeEEEEcCCCCcEEEEEc-CCCeEEEEcCCCCCccCCCC--CcccCCceeEEEccCCCCCCCCCCCCCC
Q psy11898 10 GTDRSFLSLEFSFHRALDPESGRYMEVHT-DQPGIQFYTGNYIPEMSGKK--GATYTKHCAYCFETQNFPNAVNIHRSSW 86 (124)
Q Consensus 10 GyDh~Fvl~~~~~a~L~s~~SG~~L~v~T-dqP~vqvYTgn~l~~~~g~~--g~~~~~~~GiclE~Q~~PDAiN~p~~~~ 86 (124)
.+|+.|.-.. ..+.+.++..++++.|.. ..+.++||+- +.+..+... + .-....=+|+||... . ..
T Consensus 185 ~~Drvy~~~~-~~~~i~d~~~~~~i~i~~~~~~~~VVWNP-~~~~~~~~~d~~-~~~~~~fvCvEp~~~----~----~~ 253 (269)
T cd09020 185 EVDRVYLNTP-APLTIDDPAWGRRIRIEKSGSPSAVVWNP-WIEKAARMADFP-DDGYRRMVCVEAANV----A----DP 253 (269)
T ss_pred ccceEEeCCC-CCEEEEcCCCCcEEEEEecCCCCEEEeCc-chhhccccccCC-ccccceEEEECeeec----C----CC
Confidence 7888886333 357888888889998875 5578889964 221111110 1 111233499999653 1 23
Q ss_pred ceeecCCceEEEEE
Q psy11898 87 GKIQTCGVLFIWSS 100 (124)
Q Consensus 87 ~~l~~~~~~y~~~t 100 (124)
..|.||+ .++-..
T Consensus 254 ~~L~pG~-~~~~~~ 266 (269)
T cd09020 254 VTLAPGE-SHTLSQ 266 (269)
T ss_pred EEECCCC-CEEEEE
Confidence 3555555 555443
No 17
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=67.09 E-value=25 Score=26.37 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=26.0
Q ss_pred ceeeeecCCceeEEEEcC--CCCcEEEEEcCCCeEEEEcCCCCC
Q psy11898 11 TDRSFLSLEFSFHRALDP--ESGRYMEVHTDQPGIQFYTGNYIP 52 (124)
Q Consensus 11 yDh~Fvl~~~~~a~L~s~--~SG~~L~v~TdqP~vqvYTgn~l~ 52 (124)
||+.|-+.. .|+.. +.-++++|.++.+.|.||++.+-.
T Consensus 53 Fd~VF~VsN----~lwEn~~~~~IcV~I~s~~~~i~fy~~~~~~ 92 (146)
T PF06510_consen 53 FDEVFEVSN----HLWENGADVPICVTISSSSDSIEFYTGDYDS 92 (146)
T ss_pred eeeEEEeec----ccccccCCceEEEEEecCCCcEEEEecCCCc
Confidence 455554432 24443 234899999999999999987653
No 18
>KOG2540|consensus
Probab=63.64 E-value=9.1 Score=30.88 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCeEEEEcCCCCCc-----------cCCCCCcccCCceeEEEccCCC
Q psy11898 31 GRYMEVHTDQPGIQFYTGNYIPE-----------MSGKKGATYTKHCAYCFETQNF 75 (124)
Q Consensus 31 G~~L~v~TdqP~vqvYTgn~l~~-----------~~g~~g~~~~~~~GiclE~Q~~ 75 (124)
.+++-|.--+-++-+||+....+ .++..+.-+.+=.+||+|-|.+
T Consensus 154 QrEiyV~PGEtALaFYta~N~sdkpIiGvstYni~P~~Aa~YFnKiqCFCFEEQ~L 209 (269)
T KOG2540|consen 154 QREIYVLPGETALAFYTAENPSDKPIIGVSTYNITPGQAAVYFNKIQCFCFEEQKL 209 (269)
T ss_pred ceEEEEcCCcceeeeEeccCCCCCCceeeEeeccCccHhhhheeceeEEeehhhcc
Confidence 45566666666888888876643 1344455667889999999987
No 19
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=54.84 E-value=14 Score=28.78 Aligned_cols=45 Identities=24% Similarity=0.558 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCeEEEEcCCCCCc-----------cCCCCCcccCCceeEEEccCCC
Q psy11898 31 GRYMEVHTDQPGIQFYTGNYIPE-----------MSGKKGATYTKHCAYCFETQNF 75 (124)
Q Consensus 31 G~~L~v~TdqP~vqvYTgn~l~~-----------~~g~~g~~~~~~~GiclE~Q~~ 75 (124)
+++|.|.=-+-.+.+|.+..+.+ .++.-|.-+.|=.+||+|-|.+
T Consensus 84 q~~v~v~pGet~~~~y~a~N~sd~~itg~A~~nv~P~~Ag~YF~KveCFCFteq~L 139 (195)
T COG3175 84 QREVYVRPGETNLIFYEAENLSDKPITGQATYNVAPGQAGAYFNKVECFCFTEQTL 139 (195)
T ss_pred CceeEeccCceEEEEEEEecCCCCCceeEEecccChhHhhhheeeeeEEEeeeccc
Confidence 67888888888899998877754 1345566678889999999987
No 20
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=45.55 E-value=14 Score=29.58 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=33.4
Q ss_pred cEEEEEcCCCeEEEEcCCCCCc-----------cCCCCCcccCCceeEEEccCCCC
Q psy11898 32 RYMEVHTDQPGIQFYTGNYIPE-----------MSGKKGATYTKHCAYCFETQNFP 76 (124)
Q Consensus 32 ~~L~v~TdqP~vqvYTgn~l~~-----------~~g~~g~~~~~~~GiclE~Q~~P 76 (124)
+.|+|.--+.++.+|.+....+ .++.-|.-+.|=.+||+|-|.+-
T Consensus 130 ~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ynV~P~~Ag~YFnKieCFCF~eQ~L~ 185 (232)
T PTZ00128 130 KEVEVLPGETALAFYRAKNRSDKPVIGVATYHIAPPEAGLYFNKIQCFCFEEQRLN 185 (232)
T ss_pred eEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCHHHHhhhccceeeecccccccC
Confidence 4677777788888898876644 13445666788899999999873
No 21
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=43.06 E-value=10 Score=28.41 Aligned_cols=45 Identities=27% Similarity=0.597 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCeEEEEcCCCCCc-----------cCCCCCcccCCceeEEEccCCC
Q psy11898 31 GRYMEVHTDQPGIQFYTGNYIPE-----------MSGKKGATYTKHCAYCFETQNF 75 (124)
Q Consensus 31 G~~L~v~TdqP~vqvYTgn~l~~-----------~~g~~g~~~~~~~GiclE~Q~~ 75 (124)
-++|+|.--+..+.+|.+....+ .++.-|.-+.|=.+||+|-|.+
T Consensus 58 q~~v~V~pGe~~~~~y~a~N~s~~~i~g~A~~nV~P~~a~~YF~KieCFCF~eQ~L 113 (152)
T PF04442_consen 58 QRSVKVHPGETALVFYEATNPSDKPITGQAIPNVTPGEAGKYFNKIECFCFEEQTL 113 (152)
T ss_dssp -SEEEEETT--EEEEEEEEE-SSS-EE---EEEE-SSS-STTECCS-TTS-S--EE
T ss_pred eeeEEeCCCCEEEEEEEEECCCCCcEEEEEeeeECHHHhhhhccccceEeccCcCc
Confidence 45788888888888898766643 2456677788999999999865
No 22
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=41.26 E-value=20 Score=27.82 Aligned_cols=45 Identities=27% Similarity=0.634 Sum_probs=33.1
Q ss_pred cEEEEEcCCCeEEEEcCCCCCc-----------cCCCCCcccCCceeEEEccCCCC
Q psy11898 32 RYMEVHTDQPGIQFYTGNYIPE-----------MSGKKGATYTKHCAYCFETQNFP 76 (124)
Q Consensus 32 ~~L~v~TdqP~vqvYTgn~l~~-----------~~g~~g~~~~~~~GiclE~Q~~P 76 (124)
+.|+|+--+..+.+|.+....+ .++.-|.-+.|=.+||+|-|.+-
T Consensus 86 ~~v~V~pGE~~~~~y~a~N~sd~~i~g~A~~nV~P~~a~~YF~KieCFCF~eQ~L~ 141 (188)
T PRK05089 86 RSVDVHPGELNLVFYEAENLSDRPIVGQAIPSVTPGQAGAYFNKIECFCFTQQTLQ 141 (188)
T ss_pred eEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCHHHHhhhccceeeecccCcccC
Confidence 4677777777888888776643 13445666788999999999884
No 23
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=29.55 E-value=82 Score=20.79 Aligned_cols=18 Identities=0% Similarity=-0.005 Sum_probs=14.8
Q ss_pred CCCCcEEEEEcCCCeEEE
Q psy11898 28 PESGRYMEVHTDQPGIQF 45 (124)
Q Consensus 28 ~~SG~~L~v~TdqP~vqv 45 (124)
...++++.++|..|++.+
T Consensus 28 t~~~i~I~I~tarPg~vI 45 (81)
T cd02413 28 TPTRTEIIIRATRTQNVL 45 (81)
T ss_pred cCCeEEEEEEeCCCceEE
Confidence 346789999999999876
No 24
>PHA02151 hypothetical protein
Probab=22.97 E-value=1.1e+02 Score=23.75 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=31.1
Q ss_pred EEEEcCCCCcEEEEEcCCCeEEEEcCCCCCccCCCCCcccCCceeEEEccCCCCCC
Q psy11898 23 HRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNA 78 (124)
Q Consensus 23 a~L~s~~SG~~L~v~TdqP~vqvYTgn~l~~~~g~~g~~~~~~~GiclE~Q~~PDA 78 (124)
.+.--|.-|..|+|.|+- +.|.. ..-..-++|++..|+||=.-.--||
T Consensus 107 itfdvptp~fnleiktsf-------~~wpt-mhtaga~pyg~~~glcly~g~~g~a 154 (217)
T PHA02151 107 ITFDVPTPDFNLEIKTSF-------NRWPT-MHTAGAEPYGRADGLCLYAGYKGNA 154 (217)
T ss_pred eeEeCCCCCCceEeeehh-------ccCcc-ccccCCCcCCccCceEEecccCCCC
Confidence 345567778888888853 23332 1222346899999999987766555
Done!