RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11898
(124 letters)
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A
{Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A*
Length = 344
Score = 104 bits (263), Expect = 2e-28
Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 24 RALDPESGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVN 80
R SGR +EV+T QPG+QFYTGN++ + GK GA Y KH +C ETQN+P+AVN
Sbjct: 261 RVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVN 318
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural
genomics, structure-based function assignment,
decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP:
b.30.5.4
Length = 339
Score = 104 bits (262), Expect = 2e-28
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 24 RALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVN 80
R +SG + + T P I Y ++ GKKG Y + A E Q A N
Sbjct: 257 RFWSEKSGIELSITTSYPVIHLYASKFLDC-KGKKGEHYKANKALAIEPQFHSAAPN 312
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase;
HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB:
1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A*
1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A*
1ns7_A* 1ns2_A* 1nsm_A* 1nss_A*
Length = 347
Score = 101 bits (254), Expect = 3e-27
Identities = 14/58 (24%), Positives = 20/58 (34%)
Query: 23 HRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVN 80
+A + V TDQP I +T N+ + H FE Q P +
Sbjct: 256 EQARLTLDDTSISVFTDQPSIVIFTANFGDLGTLYHEKKQVHHGGITFECQVSPGSEQ 313
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region;
aldose_1_epimerase, sugar metabolism, predicted,
structural genomics; 2.00A {Saccharomyces cerevisiae}
Length = 342
Score = 95.4 bits (238), Expect = 7e-25
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 24 RALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVN 80
+A PES EV T +P + YTG+ + + + + + +A+N
Sbjct: 267 KAYHPESHIKFEVSTTEPTVHLYTGDNLC-------GKFVPRSGFAVQQGRYVDAIN 316
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.76A {Lactobacillus acidophilus}
Length = 338
Score = 93.4 bits (233), Expect = 3e-24
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 25 ALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVN 80
AL + + V T+ P + Y GN+ ++ FE Q P N
Sbjct: 255 ALLSSNKHRLIVKTNAPALVLYAGNHFNHTGIVNN--IGQYDGITFEAQCPPAEGN 308
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Length = 326
Score = 44.8 bits (106), Expect = 1e-06
Identities = 9/60 (15%), Positives = 13/60 (21%), Gaps = 16/60 (26%)
Query: 24 RALDPESGRYMEVHTDQP--GIQFYTGNYIPEMSGKKGATYTKHCAYCFETQ-NFPNAVN 80
+ + D+ Y + K C E NAVN
Sbjct: 248 VIYHQHAHISIIYKADEQFKHWVVYNAD-------------GKQGYLCPEPYTWVTNAVN 294
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 43.9 bits (104), Expect = 2e-06
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 24 RALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVN 80
+A P+S +EV + +P QFYTG+++ A Y + E + +A+N
Sbjct: 625 KAFHPDSNITLEVLSTEPTYQFYTGDFL-------SAGYEARQGFAIEPGRYIDAIN 674
>3nre_A Aldose 1-epimerase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}
Length = 291
Score = 39.0 bits (91), Expect = 1e-04
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 24 RALDPESGRYMEVHTD--QPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQ-NFPNAVN 80
R P+ G + + T P + + + +C E + P+ +
Sbjct: 212 RIEQPQEGYAIIMETTPPAPCYFIFVSDPAFDKGYAFD-------FFCLEPMSHAPDDHH 264
>3euo_A Type III pentaketide synthase; alpha helix, acyltransferase,
transferase; 1.75A {Neurospora crassa} PDB: 3eut_A*
3euq_A*
Length = 379
Score = 28.8 bits (64), Expect = 0.42
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 20 FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM 54
+ + P+S + D G + +P +
Sbjct: 227 LGWENRVIPDSEHDLGFDVDPMGWKVVLSPRVPVL 261
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 27.4 bits (60), Expect = 1.2
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 21 SFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM 54
+ + P+S + D G + +P +
Sbjct: 257 GWENRVIPDSEHDLGFDVDPMGWKVVLSPRVPVL 290
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide
synthase, transferase, acyltransferase; HET: HC4; 1.60A
{Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Length = 387
Score = 26.8 bits (59), Expect = 2.0
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 20 FSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM 54
S + + PES +E H + G+ F+ +P +
Sbjct: 236 VSTAQTIVPESHGAIEGHLLESGLSFHLYKTVPTL 270
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 26.5 bits (58), Expect = 2.4
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 21 SFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM 54
A+ P+S + H + G+ F+ +P +
Sbjct: 254 WAGEAVLPDSDGAINGHLREAGLIFHLLKDVPGL 287
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease,
thiol protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 26.8 bits (58), Expect = 2.5
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 66 CAYCFETQNFPNAVNI 81
CA+ F+T + I
Sbjct: 49 CAFSFDTPESEGGLYI 64
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 26.2 bits (58), Expect = 3.1
Identities = 5/45 (11%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 10 GTDRSFLSLEFSFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM 54
+ + + S L + + + + GI +P
Sbjct: 241 KLEPGKVVVR-SSFSQLLDNTEDGIVLGVNHNGITCELSENLPGY 284
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 26.0 bits (58), Expect = 3.5
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 25 ALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGK 57
LD E ++ ++ G++F+ + + E + +
Sbjct: 180 GLDEELSNMIKDMLEETGVKFFLNSELLEANEE 212
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type
transferase; 1.90A {Marchantia polymorpha}
Length = 413
Score = 26.1 bits (57), Expect = 3.5
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 21 SFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM 54
+ PES ++ H + G+ F+ +P +
Sbjct: 259 WAGEMVLPESDGAIDGHLTEAGLVFHLLKDVPGL 292
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 26 LDPESGRYMEVHTDQPGIQFYTGNYIPEMSGK-KGATYTKHCAYCFETQNFPNAVNIHRS 84
+D E + G+ G + E+S + + + Q+ +++ S
Sbjct: 190 VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLS 249
Query: 85 SWGKIQT 91
+ ++T
Sbjct: 250 NGELLET 256
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 26.1 bits (57), Expect = 4.0
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 21 SFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM 54
+ + P + + +H + G+ FY P
Sbjct: 254 CTKQTVIPNTEDVIHLHLRETGMMFYLSKGSPMT 287
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 26.0 bits (58), Expect = 4.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 24 RALDPESGRYMEVHTDQPGIQFYTG 48
R LD + G +++ D+ GI+ YT
Sbjct: 184 RQLDRDGGLFLKDKLDRLGIKIYTN 208
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 25.3 bits (55), Expect = 8.2
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 21 SFHRALDPESGRYMEVHTDQPGIQFYTGNYIPEM 54
+ + P+S ++VH + G+ F+ +P +
Sbjct: 241 WTAQTIAPDSEGAIDVHLREAGLTFHLLKDVPGI 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.436
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,906,095
Number of extensions: 98605
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 24
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)