RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11898
         (124 letters)



>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis
           [TaxId: 1358]}
          Length = 340

 Score = 77.5 bits (190), Expect = 1e-18
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 9   MGTDRSFLSLEFSFHR--ALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHC 66
            G D  FL  +    +  A        + V TDQP I  +T N+    +         H 
Sbjct: 239 KGIDHPFLLDQLGLDKEQARLTLDDTSISVFTDQPSIVIFTANFGDLGTLYHEKKQVHHG 298

Query: 67  AYCFETQNFPNAVNI 81
              FE Q  P +  I
Sbjct: 299 GITFECQVSPGSEQI 313


>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 329

 Score = 74.1 bits (181), Expect = 2e-17
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 22  FHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVN 80
           + R    +SG  + + T  P I  Y   ++    GKKG  Y  + A   E Q    A N
Sbjct: 245 YLRFWSEKSGIELSITTSYPVIHLYASKFLDCK-GKKGEHYKANKALAIEPQFHSAAPN 302


>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 344

 Score = 71.8 bits (175), Expect = 1e-16
 Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 22  FHRALDPESGRYMEVHTDQPGIQFYTGNYIP-EMSGKKGATYTKHCAYCFETQNFPNAVN 80
             R     SGR +EV+T QPG+QFYTGN++   + GK GA Y KH  +C ETQN+P+AVN
Sbjct: 259 CARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAVN 318


>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 342

 Score = 71.4 bits (174), Expect = 2e-16
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 24  RALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKKGATYTKHCAYCFETQNFPNAVN 80
           +A  P+S   +EV + +P  QFYTG+++        A Y     +  E   + +A+N
Sbjct: 268 KAFHPDSNITLEVLSTEPTYQFYTGDFL-------SAGYEARQGFAIEPGRYIDAIN 317


>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1
           {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 127

 Score = 24.1 bits (52), Expect = 4.3
 Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 2/24 (8%)

Query: 81  IHRSSWGKIQTCGVLFIWSSADFV 104
           IH +    IQ  G++ +    D  
Sbjct: 17  IHTA--HLIQPHGLVVVLQEPDLT 38


>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase
           {Pyrococcus furiosus [TaxId: 2261]}
          Length = 122

 Score = 23.9 bits (51), Expect = 5.1
 Identities = 6/37 (16%), Positives = 17/37 (45%)

Query: 22  FHRALDPESGRYMEVHTDQPGIQFYTGNYIPEMSGKK 58
               LD E    ++   ++ G++F+  + + E + + 
Sbjct: 66  MFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEG 102


>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 598

 Score = 23.9 bits (51), Expect = 8.3
 Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 13  RSFLS--LEFSFHRALDPESGRYMEVHTDQP 41
           R  +S  ++F F+++   ++G+Y   + + P
Sbjct: 484 RYLVSFIIQFQFYKSACIKAGQYDPDNVELP 514


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 483,517
Number of extensions: 20946
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 11
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)