BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11901
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QTP|A Chain A, Crystal Structure Analysis Of Entamoeba Histolytica
Enolase
pdb|3QTP|B Chain B, Crystal Structure Analysis Of Entamoeba Histolytica
Enolase
Length = 441
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 17 DNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGS 69
D+W + ++ T+E G +I + L + AR K +C KV+Q+G+
Sbjct: 307 DDWAAWNKFTVEHGNFQIVGDDLLVTNPARVQMAMDK-NACNSVLIKVNQIGT 358
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 17 DNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGS--HYCQA 74
D+W + + T +G + +G++ +T K +K SC KV+Q+GS QA
Sbjct: 298 DDWGAWQKFTASAGIQVVGDDLTVTNPKRIAKAVNEK--SCNCLLLKVNQIGSVTESLQA 355
Query: 75 C 75
C
Sbjct: 356 C 356
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 17 DNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGS--HYCQA 74
D+W + + T +G + +G++ +T K +K SC KV+Q+GS QA
Sbjct: 299 DDWGAWQKFTASAGIQVVGDDLTVTNPKRIAKAVNEK--SCNCLLLKVNQIGSVTESLQA 356
Query: 75 C 75
C
Sbjct: 357 C 357
>pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|1TE6|B Chain B, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|2AKM|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKM|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
Length = 439
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 17 DNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGS--HYCQA 74
D+W + S+ T G + +G++ +T K +K +C KV+Q+GS QA
Sbjct: 298 DDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEK--ACNCLLLKVNQIGSVTEAIQA 355
Query: 75 C 75
C
Sbjct: 356 C 356
>pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJE|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJF|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJF|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJR|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJR|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJS|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
pdb|3UJS|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
Length = 443
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 17 DNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGS--HYCQA 74
D+W + S+ T G + +G++ +T K +K +C KV+Q+GS QA
Sbjct: 298 DDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEK--ACNCLLLKVNQIGSVTEAIQA 355
Query: 75 C 75
C
Sbjct: 356 C 356
>pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCC|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCD|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
pdb|3UCD|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
Length = 439
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 17 DNWKSGSRNTIESGGRRIGENKALTASKARFNPYTQKFESCKICRQKVHQVGS--HYCQA 74
D+W + S+ T G + +G++ +T K +K +C KV+Q+GS QA
Sbjct: 298 DDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEK--ACNCLLLKVNQIGSVTEAIQA 355
Query: 75 C 75
C
Sbjct: 356 C 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,103,377
Number of Sequences: 62578
Number of extensions: 106319
Number of successful extensions: 251
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 14
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)