Query psy11901
Match_columns 100
No_of_seqs 101 out of 106
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 21:52:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m3v_A FLIN4, fusion of the LI 87.9 0.091 3.1E-06 34.9 -0.2 36 56-91 34-81 (122)
2 2ecy_A TNF receptor-associated 86.3 0.3 1E-05 28.6 1.5 37 55-91 16-62 (66)
3 2egp_A Tripartite motif-contai 85.6 0.26 9E-06 29.4 1.0 36 55-90 13-64 (79)
4 2ecv_A Tripartite motif-contai 85.5 0.32 1.1E-05 29.0 1.4 36 55-90 20-70 (85)
5 1g25_A CDK-activating kinase a 85.1 0.19 6.4E-06 29.4 0.2 35 56-90 5-54 (65)
6 2ecw_A Tripartite motif-contai 82.8 0.37 1.3E-05 28.7 0.8 36 55-90 20-70 (85)
7 1chc_A Equine herpes virus-1 r 79.7 0.81 2.8E-05 26.6 1.5 38 55-92 6-53 (68)
8 2ysl_A Tripartite motif-contai 77.3 0.41 1.4E-05 28.2 -0.3 36 55-90 21-68 (73)
9 1x3h_A Leupaxin; paxillin fami 77.0 1.3 4.6E-05 26.5 2.0 10 56-65 17-26 (80)
10 1t1h_A Gspef-atpub14, armadill 76.9 0.37 1.3E-05 28.9 -0.6 36 55-90 9-54 (78)
11 2cuq_A Four and A half LIM dom 76.7 1.4 4.7E-05 26.5 2.0 11 55-65 16-26 (80)
12 1bor_A Transcription factor PM 76.7 1.3 4.5E-05 25.4 1.8 35 56-90 8-48 (56)
13 2ea5_A Cell growth regulator w 76.3 1.7 5.8E-05 26.3 2.4 39 54-92 15-59 (68)
14 3ztg_A E3 ubiquitin-protein li 76.3 0.71 2.4E-05 28.5 0.6 36 55-90 14-61 (92)
15 2jne_A Hypothetical protein YF 75.6 0.51 1.7E-05 32.7 -0.2 37 55-91 33-73 (101)
16 2csy_A Zinc finger protein 183 73.7 0.36 1.2E-05 29.3 -1.2 35 56-90 17-60 (81)
17 1jm7_A BRCA1, breast cancer ty 73.5 0.8 2.7E-05 29.0 0.3 36 55-90 22-69 (112)
18 2ecg_A Baculoviral IAP repeat- 73.2 1.2 4.2E-05 26.9 1.1 38 55-92 26-69 (75)
19 2egq_A FHL1 protein; LIM domai 72.6 2 7E-05 25.5 2.0 23 69-91 3-27 (77)
20 2cup_A Skeletal muscle LIM-pro 71.7 0.98 3.3E-05 28.3 0.4 35 56-90 35-77 (101)
21 2xjy_A Rhombotin-2; oncoprotei 71.3 0.66 2.2E-05 30.4 -0.5 36 56-91 31-78 (131)
22 2ect_A Ring finger protein 126 70.8 1.7 5.9E-05 25.8 1.4 38 55-92 16-65 (78)
23 4ic3_A E3 ubiquitin-protein li 70.3 1.4 4.8E-05 26.7 0.9 38 55-92 25-68 (74)
24 2ckl_B Ubiquitin ligase protei 69.9 1.1 3.7E-05 30.8 0.3 36 56-91 56-102 (165)
25 2jrp_A Putative cytoplasmic pr 69.4 1.4 4.7E-05 29.1 0.8 34 56-89 4-41 (81)
26 1e4u_A Transcriptional repress 68.9 1.6 5.4E-05 27.3 0.9 37 55-91 12-62 (78)
27 2xqn_T Testin, TESS; metal-bin 68.8 0.79 2.7E-05 29.9 -0.5 36 56-91 32-75 (126)
28 3l11_A E3 ubiquitin-protein li 68.7 1.5 5.1E-05 28.2 0.8 36 55-90 16-61 (115)
29 1x6a_A LIMK-2, LIM domain kina 68.5 2.8 9.6E-05 25.2 2.0 11 55-65 16-26 (81)
30 4ayc_A E3 ubiquitin-protein li 68.4 0.96 3.3E-05 30.3 -0.2 35 56-90 55-98 (138)
31 2rgt_A Fusion of LIM/homeobox 67.2 1.5 5.1E-05 30.3 0.6 36 56-91 35-77 (169)
32 1x63_A Skeletal muscle LIM-pro 66.7 3.7 0.00013 24.6 2.3 12 55-66 16-27 (82)
33 1kbe_A Kinase suppressor of RA 65.4 0.76 2.6E-05 27.3 -1.1 31 46-78 6-36 (49)
34 2ehe_A Four and A half LIM dom 65.1 3.6 0.00012 24.7 2.0 23 68-90 2-26 (82)
35 2dlo_A Thyroid receptor-intera 64.9 3.9 0.00013 24.6 2.1 12 54-65 15-26 (81)
36 3fl2_A E3 ubiquitin-protein li 64.8 1.4 4.6E-05 28.8 0.0 37 55-91 53-99 (124)
37 2ecj_A Tripartite motif-contai 64.1 1.6 5.3E-05 24.4 0.2 31 55-85 16-58 (58)
38 2ea6_A Ring finger protein 4; 63.6 0.76 2.6E-05 26.4 -1.3 36 55-90 16-67 (69)
39 1v6g_A Actin binding LIM prote 62.9 4.7 0.00016 24.3 2.2 10 56-65 17-26 (81)
40 2jtn_A LIM domain-binding prot 61.7 1.9 6.6E-05 30.1 0.3 37 56-92 89-132 (182)
41 1iym_A EL5; ring-H2 finger, ub 60.7 3.8 0.00013 22.6 1.4 24 67-90 27-54 (55)
42 2xeu_A Ring finger protein 4; 60.1 1.1 3.9E-05 25.3 -0.9 25 67-91 28-56 (64)
43 3gox_A Restriction endonucleas 59.9 4.6 0.00016 30.8 2.1 71 12-91 60-149 (200)
44 2d8t_A Dactylidin, ring finger 59.7 1.3 4.6E-05 26.1 -0.7 37 55-91 16-61 (71)
45 3ng2_A RNF4, snurf, ring finge 59.1 1.2 4.2E-05 25.8 -0.9 37 55-91 11-63 (71)
46 1x4j_A Ring finger protein 38; 57.3 2.9 0.0001 24.8 0.6 38 54-91 23-72 (75)
47 1jm7_B BARD1, BRCA1-associated 56.8 5.9 0.0002 25.6 2.1 36 55-90 23-66 (117)
48 2djb_A Polycomb group ring fin 56.8 3.1 0.0001 24.6 0.6 37 55-91 16-62 (72)
49 2ct2_A Tripartite motif protei 56.5 2.3 7.8E-05 25.5 -0.0 36 55-90 16-67 (88)
50 2kiz_A E3 ubiquitin-protein li 56.3 2.7 9.3E-05 24.4 0.3 37 55-91 15-63 (69)
51 1rut_X Flinc4, fusion protein 56.0 1.6 5.3E-05 30.8 -1.0 36 56-91 34-81 (188)
52 2ep4_A Ring finger protein 24; 55.7 2.5 8.5E-05 24.9 0.0 42 55-96 16-69 (74)
53 2ysj_A Tripartite motif-contai 55.2 3 0.0001 23.8 0.3 23 55-77 21-48 (63)
54 4ap4_A E3 ubiquitin ligase RNF 54.3 2.2 7.6E-05 27.1 -0.4 37 55-91 8-60 (133)
55 2yur_A Retinoblastoma-binding 54.3 3.8 0.00013 24.4 0.7 37 55-91 16-64 (74)
56 1rmd_A RAG1; V(D)J recombinati 52.1 2.8 9.5E-05 26.9 -0.2 37 55-91 24-70 (116)
57 2yho_A E3 ubiquitin-protein li 51.8 4.3 0.00015 25.1 0.7 38 55-92 19-62 (79)
58 3hct_A TNF receptor-associated 49.8 3.5 0.00012 26.7 0.0 38 55-92 19-66 (118)
59 1a7i_A QCRP2 (LIM1); LIM domai 49.1 5.1 0.00017 24.1 0.7 32 56-87 36-75 (81)
60 2k0a_A PRE-mRNA-splicing facto 47.5 3.5 0.00012 28.8 -0.2 27 50-76 53-79 (109)
61 2ckl_A Polycomb group ring fin 46.1 3.7 0.00012 26.1 -0.3 37 55-91 16-62 (108)
62 2vje_B MDM4 protein; proto-onc 44.8 2.4 8.1E-05 25.1 -1.3 38 55-92 8-57 (63)
63 2a20_A Regulating synaptic mem 44.7 5.2 0.00018 25.5 0.2 36 54-91 9-45 (62)
64 2ecm_A Ring finger and CHY zin 44.4 6.5 0.00022 21.5 0.6 36 55-90 6-54 (55)
65 1z6u_A NP95-like ring finger p 43.1 3.7 0.00013 28.3 -0.7 38 55-92 79-126 (150)
66 3vk6_A E3 ubiquitin-protein li 42.7 6.1 0.00021 27.1 0.3 31 68-98 21-56 (101)
67 2c6a_A Ubiquitin-protein ligas 42.6 7.9 0.00027 23.3 0.8 21 55-76 14-34 (46)
68 2y43_A E3 ubiquitin-protein li 42.2 4.9 0.00017 25.0 -0.2 37 55-91 23-69 (99)
69 1b8t_A Protein (CRP1); LIM dom 41.1 3.8 0.00013 28.8 -0.9 12 81-92 117-128 (192)
70 2y1n_A E3 ubiquitin-protein li 40.0 8 0.00027 31.5 0.7 39 54-92 332-380 (389)
71 1x4l_A Skeletal muscle LIM-pro 38.8 22 0.00077 20.5 2.5 13 81-93 37-49 (72)
72 2cr8_A MDM4 protein; ZF-ranbp 36.2 9.7 0.00033 23.5 0.5 21 55-76 12-32 (53)
73 3t6p_A Baculoviral IAP repeat- 35.0 15 0.00051 28.9 1.6 38 55-92 296-339 (345)
74 2c2l_A CHIP, carboxy terminus 32.6 12 0.00039 26.6 0.5 37 54-90 208-254 (281)
75 2ecn_A Ring finger protein 141 30.9 4.2 0.00014 23.6 -1.8 38 55-92 16-61 (70)
76 2ot8_C HnRNP M, heterogeneous 30.8 13 0.00046 20.5 0.5 8 45-52 19-26 (30)
77 2cu8_A Cysteine-rich protein 2 30.3 32 0.0011 20.1 2.2 12 81-92 38-49 (76)
78 1nyp_A Pinch protein; LIM doma 29.5 33 0.0011 19.4 2.1 12 81-92 33-44 (66)
79 3j21_g 50S ribosomal protein L 29.4 16 0.00054 22.0 0.6 22 56-78 16-37 (51)
80 2vje_A E3 ubiquitin-protein li 27.0 5.9 0.0002 23.4 -1.6 38 55-92 9-58 (64)
81 1iml_A CRIP, cysteine rich int 26.1 18 0.00061 21.3 0.5 34 56-89 29-71 (76)
82 2kq9_A DNAK suppressor protein 25.9 17 0.00057 24.2 0.3 11 80-90 82-92 (112)
83 1klr_A Zinc finger Y-chromosom 24.8 20 0.0007 15.7 0.4 13 81-93 4-16 (30)
84 3lrq_A E3 ubiquitin-protein li 24.6 13 0.00046 23.3 -0.3 36 55-90 23-69 (100)
85 1zfo_A LAsp-1; LIM domain, zin 24.4 27 0.00092 18.2 0.9 13 80-92 4-16 (31)
86 2lvu_A Zinc finger and BTB dom 30.2 16 0.00055 16.1 0.0 12 81-92 4-15 (26)
87 1wyh_A SLIM 2, skeletal muscle 23.8 40 0.0014 19.3 1.7 12 81-92 35-46 (72)
88 2m0e_A Zinc finger and BTB dom 23.7 26 0.00088 15.2 0.7 13 81-93 4-16 (29)
89 1e7l_A GP49, recombination end 23.6 23 0.0008 25.7 0.8 14 77-90 18-31 (157)
90 2z5k_B Nuclear RNA export fact 23.1 21 0.00073 19.3 0.4 10 43-52 16-25 (30)
91 2lvr_A Zinc finger and BTB dom 28.4 18 0.00061 16.1 0.0 12 81-92 5-16 (30)
92 1g47_A Pinch protein; LIM doma 22.5 62 0.0021 18.7 2.4 13 81-93 41-53 (77)
93 2lvt_A Zinc finger and BTB dom 28.1 18 0.00063 16.1 0.0 12 81-92 4-15 (29)
94 1znf_A 31ST zinc finger from X 22.2 22 0.00075 15.5 0.3 12 81-92 3-14 (27)
95 1tjl_A DNAK suppressor protein 21.9 28 0.00096 24.5 0.9 11 80-90 112-122 (151)
96 2kgo_A Uncharacterized protein 21.8 29 0.00099 23.7 0.9 11 80-90 57-67 (108)
97 1paa_A Yeast transcription fac 21.7 26 0.0009 15.5 0.5 13 81-93 4-16 (30)
98 2ecl_A Ring-box protein 2; RNF 21.5 27 0.00093 21.1 0.7 24 67-90 48-75 (81)
99 2m0f_A Zinc finger and BTB dom 20.7 17 0.00059 15.9 -0.3 11 81-91 4-14 (29)
100 1ee8_A MUTM (FPG) protein; bet 20.4 25 0.00087 26.5 0.4 32 45-76 226-262 (266)
101 2kvh_A Zinc finger and BTB dom 20.3 19 0.00064 15.9 -0.2 12 81-92 5-16 (27)
102 2xzf_A Formamidopyrimidine-DNA 20.3 26 0.00088 26.5 0.4 32 45-76 233-269 (271)
No 1
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=87.87 E-value=0.091 Score=34.89 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=28.5
Q ss_pred cchhhhhhhc--------cCCCccCcccccc----cccccccCccccc
Q psy11901 56 SCKICRQKVH--------QVGSHYCQACAYK----KGICAMCGKKLLD 91 (100)
Q Consensus 56 ~C~~CK~~v~--------q~g~~YCq~CAYk----kGiCamCGKki~d 91 (100)
+|..|+..+. .+|..||..|-.+ +|.|+.|++.|.+
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 7888887773 3467899999875 4699999999985
No 2
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.27 E-value=0.3 Score=28.63 Aligned_cols=37 Identities=19% Similarity=0.680 Sum_probs=28.1
Q ss_pred ccchhhhhhhccC-----CCccCccccc-----ccccccccCccccc
Q psy11901 55 ESCKICRQKVHQV-----GSHYCQACAY-----KKGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~q~-----g~~YCq~CAY-----kkGiCamCGKki~d 91 (100)
..|.||...+..+ ||.||..|.. ....|.+|...+..
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4788887755433 8899999986 24579999998864
No 3
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=85.64 E-value=0.26 Score=29.39 Aligned_cols=36 Identities=31% Similarity=0.782 Sum_probs=27.8
Q ss_pred ccchhhhhhhcc-----CCCccCcccccc-----------cccccccCcccc
Q psy11901 55 ESCKICRQKVHQ-----VGSHYCQACAYK-----------KGICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~YCq~CAYk-----------kGiCamCGKki~ 90 (100)
-.|.||...+.. =||.||..|... ...|.+|...+.
T Consensus 13 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 478888765543 388999999874 668999999885
No 4
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.54 E-value=0.32 Score=29.03 Aligned_cols=36 Identities=31% Similarity=0.774 Sum_probs=28.7
Q ss_pred ccchhhhhhhcc-----CCCccCcccccc----------cccccccCcccc
Q psy11901 55 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~YCq~CAYk----------kGiCamCGKki~ 90 (100)
..|.||...+.. =||.||..|... ...|.+|...+.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 478888876543 388999999865 678999999876
No 5
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.10 E-value=0.19 Score=29.44 Aligned_cols=35 Identities=31% Similarity=0.789 Sum_probs=25.3
Q ss_pred cchhhhh-hh---------ccCCCccCccccccc-----ccccccCcccc
Q psy11901 56 SCKICRQ-KV---------HQVGSHYCQACAYKK-----GICAMCGKKLL 90 (100)
Q Consensus 56 ~C~~CK~-~v---------~q~g~~YCq~CAYkk-----GiCamCGKki~ 90 (100)
.|.||.. .. ..=||.||..|..+- ..|.+|++.+.
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred cCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 6777777 22 234889999997433 57999999885
No 6
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=82.84 E-value=0.37 Score=28.72 Aligned_cols=36 Identities=28% Similarity=0.750 Sum_probs=28.4
Q ss_pred ccchhhhhhhcc-----CCCccCcccccc----------cccccccCcccc
Q psy11901 55 ESCKICRQKVHQ-----VGSHYCQACAYK----------KGICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~YCq~CAYk----------kGiCamCGKki~ 90 (100)
..|.||...+.. =||.||..|... ...|.+|...+.
T Consensus 20 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 479999876543 388999999865 668999998876
No 7
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=79.69 E-value=0.81 Score=26.56 Aligned_cols=38 Identities=24% Similarity=0.638 Sum_probs=27.6
Q ss_pred ccchhhhhhhccC------CCccCcccccc----cccccccCcccccc
Q psy11901 55 ESCKICRQKVHQV------GSHYCQACAYK----KGICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v~q~------g~~YCq~CAYk----kGiCamCGKki~dt 92 (100)
..|.||...+..+ ||.||..|... ...|.+|...+...
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 4677776655432 78899999853 57899999988654
No 8
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.31 E-value=0.41 Score=28.16 Aligned_cols=36 Identities=22% Similarity=0.664 Sum_probs=27.4
Q ss_pred ccchhhhhhhcc-----CCCccCccccccc-------ccccccCcccc
Q psy11901 55 ESCKICRQKVHQ-----VGSHYCQACAYKK-------GICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~YCq~CAYkk-------GiCamCGKki~ 90 (100)
..|.||...+.. =||.||..|...- ..|.+|...+.
T Consensus 21 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 489999875543 3889999998543 37999998875
No 9
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.03 E-value=1.3 Score=26.55 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=4.9
Q ss_pred cchhhhhhhc
Q psy11901 56 SCKICRQKVH 65 (100)
Q Consensus 56 ~C~~CK~~v~ 65 (100)
+|..|.+.|.
T Consensus 17 ~C~~C~~~I~ 26 (80)
T 1x3h_A 17 KCGGCNRPVL 26 (80)
T ss_dssp BCTTTCCBCC
T ss_pred ccccCCCeec
Confidence 4555554444
No 10
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=76.91 E-value=0.37 Score=28.93 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=26.3
Q ss_pred ccchhhhhhhcc-----CCCccCcccccc-----cccccccCcccc
Q psy11901 55 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~YCq~CAYk-----kGiCamCGKki~ 90 (100)
-.|.||...... -||.||..|... ...|.+|+..+.
T Consensus 9 ~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 367777764433 388999999642 568999999885
No 11
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.68 E-value=1.4 Score=26.51 Aligned_cols=11 Identities=18% Similarity=0.679 Sum_probs=5.5
Q ss_pred ccchhhhhhhc
Q psy11901 55 ESCKICRQKVH 65 (100)
Q Consensus 55 ~~C~~CK~~v~ 65 (100)
.+|..|...|.
T Consensus 16 ~~C~~C~~~I~ 26 (80)
T 2cuq_A 16 PRCARCSKTLT 26 (80)
T ss_dssp CCCTTTCCCCC
T ss_pred CcCCCCCCEec
Confidence 34555555553
No 12
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.66 E-value=1.3 Score=25.44 Aligned_cols=35 Identities=17% Similarity=0.507 Sum_probs=25.4
Q ss_pred cchhhhhhhcc-----CCCccCccccccc-ccccccCcccc
Q psy11901 56 SCKICRQKVHQ-----VGSHYCQACAYKK-GICAMCGKKLL 90 (100)
Q Consensus 56 ~C~~CK~~v~q-----~g~~YCq~CAYkk-GiCamCGKki~ 90 (100)
.|.||...... =||.||..|.... ..|.+|...+.
T Consensus 8 ~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 8 RCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp SCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred CceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEee
Confidence 57777664433 3889999998653 47999998765
No 13
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.33 E-value=1.7 Score=26.31 Aligned_cols=39 Identities=18% Similarity=0.526 Sum_probs=30.2
Q ss_pred Cccchhhhhhhc-----cCCCc-cCcccccccccccccCcccccc
Q psy11901 54 FESCKICRQKVH-----QVGSH-YCQACAYKKGICAMCGKKLLDV 92 (100)
Q Consensus 54 ~~~C~~CK~~v~-----q~g~~-YCq~CAYkkGiCamCGKki~dt 92 (100)
...|.||-.... .=||. +|..|+-....|.+|-..|.++
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQES 59 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCE
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhce
Confidence 357888866433 23666 8999999999999999999764
No 14
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=76.26 E-value=0.71 Score=28.46 Aligned_cols=36 Identities=25% Similarity=0.717 Sum_probs=26.9
Q ss_pred ccchhhhhhhcc----C--CCccCccccccc------ccccccCcccc
Q psy11901 55 ESCKICRQKVHQ----V--GSHYCQACAYKK------GICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~q----~--g~~YCq~CAYkk------GiCamCGKki~ 90 (100)
-.|.||...+.. + ||.||..|...- ..|.+|...+.
T Consensus 14 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 14 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 478888775443 2 899999997532 38999999874
No 15
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=75.65 E-value=0.51 Score=32.67 Aligned_cols=37 Identities=27% Similarity=0.657 Sum_probs=30.1
Q ss_pred ccchhhhhhhccCCCcc-Ccccc---cccccccccCccccc
Q psy11901 55 ESCKICRQKVHQVGSHY-CQACA---YKKGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~q~g~~Y-Cq~CA---YkkGiCamCGKki~d 91 (100)
..|.+|.+.+.+.|..| |..|. -+.+.|+-||..+--
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHH
Confidence 58999999987767677 88886 456899999998763
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.67 E-value=0.36 Score=29.31 Aligned_cols=35 Identities=29% Similarity=0.728 Sum_probs=27.1
Q ss_pred cchhhhhhhccC-----CCccCcccccc----cccccccCcccc
Q psy11901 56 SCKICRQKVHQV-----GSHYCQACAYK----KGICAMCGKKLL 90 (100)
Q Consensus 56 ~C~~CK~~v~q~-----g~~YCq~CAYk----kGiCamCGKki~ 90 (100)
.|.||...+..+ ||.||..|... ...|.+|...+.
T Consensus 17 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 17 RCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp BCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 788887765443 88999999853 457999999875
No 17
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.50 E-value=0.8 Score=28.95 Aligned_cols=36 Identities=22% Similarity=0.708 Sum_probs=26.7
Q ss_pred ccchhhhhhhccC-----CCccCccccccc-------ccccccCcccc
Q psy11901 55 ESCKICRQKVHQV-----GSHYCQACAYKK-------GICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~q~-----g~~YCq~CAYkk-------GiCamCGKki~ 90 (100)
-.|.||...+..+ ||.||..|...- ..|++|...+.
T Consensus 22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 3788887755443 889999997431 27999999876
No 18
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.20 E-value=1.2 Score=26.88 Aligned_cols=38 Identities=29% Similarity=0.583 Sum_probs=29.8
Q ss_pred ccchhhhhhhcc-----CCCc-cCcccccccccccccCcccccc
Q psy11901 55 ESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~-YCq~CAYkkGiCamCGKki~dt 92 (100)
..|.||...... =||. +|..|+-....|.+|...|.++
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFK 69 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCc
Confidence 478888664432 3667 9999999999999999998764
No 19
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=72.63 E-value=2 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=13.7
Q ss_pred CccCccccccc--ccccccCccccc
Q psy11901 69 SHYCQACAYKK--GICAMCGKKLLD 91 (100)
Q Consensus 69 ~~YCq~CAYkk--GiCamCGKki~d 91 (100)
..||..|-++. .+|+.|++.|.+
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~ 27 (77)
T 2egq_A 3 SGSSGDCYKNFVAKKCAGCKNPITG 27 (77)
T ss_dssp SSCCTTCCCSCCCCCCSSSCCCCCC
T ss_pred CeEchhHhchhhCccCcccCCcccC
Confidence 35666665443 467777776664
No 20
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=71.74 E-value=0.98 Score=28.27 Aligned_cols=35 Identities=20% Similarity=0.573 Sum_probs=26.8
Q ss_pred cchhhhhhhc------cCCCccCccccccc--ccccccCcccc
Q psy11901 56 SCKICRQKVH------QVGSHYCQACAYKK--GICAMCGKKLL 90 (100)
Q Consensus 56 ~C~~CK~~v~------q~g~~YCq~CAYkk--GiCamCGKki~ 90 (100)
+|..|...+. .+|..||..|..+. ..|+.|++.|.
T Consensus 35 ~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 35 RCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred cccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 6777777653 23667899997654 59999999998
No 21
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=71.25 E-value=0.66 Score=30.42 Aligned_cols=36 Identities=28% Similarity=0.794 Sum_probs=25.1
Q ss_pred cchhhhhhhc--------cCCCccCccccccc----ccccccCccccc
Q psy11901 56 SCKICRQKVH--------QVGSHYCQACAYKK----GICAMCGKKLLD 91 (100)
Q Consensus 56 ~C~~CK~~v~--------q~g~~YCq~CAYkk----GiCamCGKki~d 91 (100)
+|..|...+. .+|..||..|-.+. ++|+.|++.|..
T Consensus 31 ~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 31 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp BCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred ccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 6777777663 23567888887653 378888888863
No 22
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=70.80 E-value=1.7 Score=25.83 Aligned_cols=38 Identities=18% Similarity=0.600 Sum_probs=27.9
Q ss_pred ccchhhhhhhc--------cCCCccCccccc----ccccccccCcccccc
Q psy11901 55 ESCKICRQKVH--------QVGSHYCQACAY----KKGICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v~--------q~g~~YCq~CAY----kkGiCamCGKki~dt 92 (100)
..|.||...+. .=||.||..|.. ....|.+|...|...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 47888865442 237889999986 457899999988743
No 23
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=70.31 E-value=1.4 Score=26.70 Aligned_cols=38 Identities=29% Similarity=0.583 Sum_probs=30.9
Q ss_pred ccchhhhhhhcc-----CCCc-cCcccccccccccccCcccccc
Q psy11901 55 ESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~-YCq~CAYkkGiCamCGKki~dt 92 (100)
..|.||...... =||. +|..|+..-..|.+|-..|.++
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFK 68 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCc
Confidence 479999875542 3777 9999999999999999998765
No 24
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=69.93 E-value=1.1 Score=30.75 Aligned_cols=36 Identities=28% Similarity=0.741 Sum_probs=27.9
Q ss_pred cchhhhhhhc------cCCCccCcccccc-----cccccccCccccc
Q psy11901 56 SCKICRQKVH------QVGSHYCQACAYK-----KGICAMCGKKLLD 91 (100)
Q Consensus 56 ~C~~CK~~v~------q~g~~YCq~CAYk-----kGiCamCGKki~d 91 (100)
.|.||...+. .=||.||..|..+ ...|.+|...+..
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 7999976443 3489999999854 5679999999854
No 25
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=69.36 E-value=1.4 Score=29.13 Aligned_cols=34 Identities=26% Similarity=0.923 Sum_probs=16.8
Q ss_pred cchhhhhhhccCCCcc-Ccccc--c-ccccccccCccc
Q psy11901 56 SCKICRQKVHQVGSHY-CQACA--Y-KKGICAMCGKKL 89 (100)
Q Consensus 56 ~C~~CK~~v~q~g~~Y-Cq~CA--Y-kkGiCamCGKki 89 (100)
.|.+|.+.+.+.+..| |..|. | +.+.|.-||.++
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~L 41 (81)
T 2jrp_A 4 TCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPL 41 (81)
T ss_dssp CCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCC
T ss_pred CCCCCCCccccCCCceECccccccCCCcccCcchhhHH
Confidence 4555555554444443 55554 2 223555555554
No 26
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=68.91 E-value=1.6 Score=27.34 Aligned_cols=37 Identities=24% Similarity=0.741 Sum_probs=28.4
Q ss_pred ccchhhhhhhcc---------CCCccCcccccc-----cccccccCccccc
Q psy11901 55 ESCKICRQKVHQ---------VGSHYCQACAYK-----KGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~q---------~g~~YCq~CAYk-----kGiCamCGKki~d 91 (100)
..|.||-..+.. =||.+|+.|... .+.|.+|-+.+.+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 478888887743 488999999644 3689999988764
No 27
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=68.80 E-value=0.79 Score=29.91 Aligned_cols=36 Identities=19% Similarity=0.471 Sum_probs=20.8
Q ss_pred cchhhhhhhc------cCCCccCccccccc--ccccccCccccc
Q psy11901 56 SCKICRQKVH------QVGSHYCQACAYKK--GICAMCGKKLLD 91 (100)
Q Consensus 56 ~C~~CK~~v~------q~g~~YCq~CAYkk--GiCamCGKki~d 91 (100)
.|..|+..+. .+|..||..|-.+. .+|+.||+.|..
T Consensus 32 ~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 32 CCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp BCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred CcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 5566655442 23556677666542 467777777763
No 28
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=68.65 E-value=1.5 Score=28.17 Aligned_cols=36 Identities=19% Similarity=0.620 Sum_probs=26.3
Q ss_pred ccchhhhhhhcc-----CCCccCcccccc-----cccccccCcccc
Q psy11901 55 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~YCq~CAYk-----kGiCamCGKki~ 90 (100)
-.|.||...+.. =||.||..|... ...|.+|...+.
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 368888654433 378899999754 448999999875
No 29
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.51 E-value=2.8 Score=25.21 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=7.4
Q ss_pred ccchhhhhhhc
Q psy11901 55 ESCKICRQKVH 65 (100)
Q Consensus 55 ~~C~~CK~~v~ 65 (100)
.+|..|.+.|.
T Consensus 16 ~~C~~C~~~I~ 26 (81)
T 1x6a_A 16 EFCHGCSLLMT 26 (81)
T ss_dssp CBCTTTCCBCC
T ss_pred CcCccCCCCcC
Confidence 46777777666
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=68.43 E-value=0.96 Score=30.35 Aligned_cols=35 Identities=26% Similarity=0.700 Sum_probs=26.9
Q ss_pred cchhhhhhhc-----cCCCccCcccccc----cccccccCcccc
Q psy11901 56 SCKICRQKVH-----QVGSHYCQACAYK----KGICAMCGKKLL 90 (100)
Q Consensus 56 ~C~~CK~~v~-----q~g~~YCq~CAYk----kGiCamCGKki~ 90 (100)
.|.||..... .=||.||..|... ...|++|.+.|.
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 6989876543 2388999999753 578999998875
No 31
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=67.24 E-value=1.5 Score=30.27 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=21.1
Q ss_pred cchhhhhhhc-----cCCCccCccccccc--ccccccCccccc
Q psy11901 56 SCKICRQKVH-----QVGSHYCQACAYKK--GICAMCGKKLLD 91 (100)
Q Consensus 56 ~C~~CK~~v~-----q~g~~YCq~CAYkk--GiCamCGKki~d 91 (100)
+|..|+..+. .+|..||..|-++. -.|+.|++.|..
T Consensus 35 ~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 35 KCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPP 77 (169)
T ss_dssp BCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCT
T ss_pred ccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCC
Confidence 5666655542 23566777666543 467777776653
No 32
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.69 E-value=3.7 Score=24.64 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=7.4
Q ss_pred ccchhhhhhhcc
Q psy11901 55 ESCKICRQKVHQ 66 (100)
Q Consensus 55 ~~C~~CK~~v~q 66 (100)
..|..|.+.|..
T Consensus 16 ~~C~~C~~~I~~ 27 (82)
T 1x63_A 16 PKCKGCFKAIVA 27 (82)
T ss_dssp CBCSSSCCBCCS
T ss_pred CcCccCCccccc
Confidence 466666666654
No 33
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=65.37 E-value=0.76 Score=27.32 Aligned_cols=31 Identities=26% Similarity=0.654 Sum_probs=21.0
Q ss_pred hcCCCcccCccchhhhhhhccCCCccCcccccc
Q psy11901 46 RFNPYTQKFESCKICRQKVHQVGSHYCQACAYK 78 (100)
Q Consensus 46 r~~Py~~~~~~C~~CK~~v~q~g~~YCq~CAYk 78 (100)
||.+.......|..|+..|.| | -.|..|.|.
T Consensus 6 rF~~~t~~~t~C~~C~k~i~~-G-~kC~~Ck~~ 36 (49)
T 1kbe_A 6 RFSTKSWLSQVCNVCQKSMIF-G-VKCKHCRLK 36 (49)
T ss_dssp CEEEECCSSCCCSSSCCSSCC-E-EEETTTTEE
T ss_pred ccCccCCCCcCccccCceeEC-c-CCCCCCCCc
Confidence 344433234689999999987 5 678888774
No 34
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.14 E-value=3.6 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=11.6
Q ss_pred CCccCccccccc--ccccccCcccc
Q psy11901 68 GSHYCQACAYKK--GICAMCGKKLL 90 (100)
Q Consensus 68 g~~YCq~CAYkk--GiCamCGKki~ 90 (100)
|..||..|-++. .+|+-|++.|.
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIG 26 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCC
T ss_pred CceechhHhCcccCCcCccCCCccc
Confidence 345555554332 35555555555
No 35
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.91 E-value=3.9 Score=24.64 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=7.9
Q ss_pred Cccchhhhhhhc
Q psy11901 54 FESCKICRQKVH 65 (100)
Q Consensus 54 ~~~C~~CK~~v~ 65 (100)
...|..|.+.|.
T Consensus 15 ~~~C~~C~~~I~ 26 (81)
T 2dlo_A 15 LEKCATCSQPIL 26 (81)
T ss_dssp CCBCTTTCCBCC
T ss_pred CCccccCCCeec
Confidence 356777777665
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=64.84 E-value=1.4 Score=28.84 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=27.7
Q ss_pred ccchhhhhhhc-----cCCCccCccccc-----ccccccccCccccc
Q psy11901 55 ESCKICRQKVH-----QVGSHYCQACAY-----KKGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~-----q~g~~YCq~CAY-----kkGiCamCGKki~d 91 (100)
-.|.||...+. .=||.||..|.. ....|++|...+..
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 37999976543 338889999984 23489999998864
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.10 E-value=1.6 Score=24.36 Aligned_cols=31 Identities=29% Similarity=0.917 Sum_probs=20.8
Q ss_pred ccchhhhhhhccC-----CCccCcccccc-------ccccccc
Q psy11901 55 ESCKICRQKVHQV-----GSHYCQACAYK-------KGICAMC 85 (100)
Q Consensus 55 ~~C~~CK~~v~q~-----g~~YCq~CAYk-------kGiCamC 85 (100)
..|.||...+..+ ||.||..|... ...|.+|
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4788887765543 78888888643 2456655
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.63 E-value=0.76 Score=26.41 Aligned_cols=36 Identities=31% Similarity=0.764 Sum_probs=26.5
Q ss_pred ccchhhhhhhc------------cCCCccCcccccc----cccccccCcccc
Q psy11901 55 ESCKICRQKVH------------QVGSHYCQACAYK----KGICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~------------q~g~~YCq~CAYk----kGiCamCGKki~ 90 (100)
..|.||...+. .=||.||..|... ...|.+|...|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 47888876443 2478899999853 568999998764
No 39
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.86 E-value=4.7 Score=24.26 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=5.6
Q ss_pred cchhhhhhhc
Q psy11901 56 SCKICRQKVH 65 (100)
Q Consensus 56 ~C~~CK~~v~ 65 (100)
+|..|...|.
T Consensus 17 ~C~~C~~~I~ 26 (81)
T 1v6g_A 17 RCFSCDQFIE 26 (81)
T ss_dssp BCTTTCCBCC
T ss_pred cCccccCEec
Confidence 5555555554
No 40
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=61.72 E-value=1.9 Score=30.06 Aligned_cols=37 Identities=24% Similarity=0.538 Sum_probs=28.7
Q ss_pred cchhhhhhhc-----cCCCccCccccccc--ccccccCcccccc
Q psy11901 56 SCKICRQKVH-----QVGSHYCQACAYKK--GICAMCGKKLLDV 92 (100)
Q Consensus 56 ~C~~CK~~v~-----q~g~~YCq~CAYkk--GiCamCGKki~dt 92 (100)
+|..|+..+. .+|..||..|.++. -.|+.|++.|...
T Consensus 89 ~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 89 KCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPT 132 (182)
T ss_dssp SCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSS
T ss_pred ccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCC
Confidence 7888887763 34778999998765 5899999998753
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=60.69 E-value=3.8 Score=22.60 Aligned_cols=24 Identities=17% Similarity=0.599 Sum_probs=17.6
Q ss_pred CCCccCcccccc----cccccccCcccc
Q psy11901 67 VGSHYCQACAYK----KGICAMCGKKLL 90 (100)
Q Consensus 67 ~g~~YCq~CAYk----kGiCamCGKki~ 90 (100)
=||.||..|..+ ...|.+|...|.
T Consensus 27 C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 27 CGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 367788888753 678999987653
No 42
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=60.09 E-value=1.1 Score=25.28 Aligned_cols=25 Identities=28% Similarity=0.773 Sum_probs=19.6
Q ss_pred CCCccCccccc----ccccccccCccccc
Q psy11901 67 VGSHYCQACAY----KKGICAMCGKKLLD 91 (100)
Q Consensus 67 ~g~~YCq~CAY----kkGiCamCGKki~d 91 (100)
=||.||..|.. ....|.+|...+..
T Consensus 28 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 28 CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 37889999975 35689999988763
No 43
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=59.94 E-value=4.6 Score=30.77 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=41.8
Q ss_pred CccCCCCCCCCCcccccCCCeec----cccchhhh-hhhhcCCCc--ccCccchhhhhhhccCCCccCccc-------cc
Q psy11901 12 KVITPDNWKSGSRNTIESGGRRI----GENKALTA-SKARFNPYT--QKFESCKICRQKVHQVGSHYCQAC-------AY 77 (100)
Q Consensus 12 kl~tPd~~k~gs~~~~~~g~rkv----~eNKlLs~-~k~r~~Py~--~~~~~C~~CK~~v~q~g~~YCq~C-------AY 77 (100)
.|-+-|.||.|.+. |.++ ++=|-++. .+++-+|=+ .+.+.|+.|...+. .|=-+- +-
T Consensus 60 ~~~~~~~~~~~~~~-----G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr----~YGIT~eey~~L~e~ 130 (200)
T 3gox_A 60 ELEAIDIYRTGKGY-----DKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNID----GVKLSSTEKKKMDEI 130 (200)
T ss_dssp GEEECCGGGSSTTS-----SEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHH----CSCCCHHHHHHHHTT
T ss_pred hcceeeeeeccccC-----CCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccC----CcCCCHHHHHHHHHH
Confidence 47788999987532 4444 55565654 233444433 24678999987541 222111 12
Q ss_pred cc-----ccccccCccccc
Q psy11901 78 KK-----GICAMCGKKLLD 91 (100)
Q Consensus 78 kk-----GiCamCGKki~d 91 (100)
+. |.|++||+....
T Consensus 131 Qg~~~~~G~C~ICg~~~~~ 149 (200)
T 3gox_A 131 APPKGSVFTCPICEKRSIV 149 (200)
T ss_dssp CCCTTCEEECTTTCCEEEB
T ss_pred cccCCCCCcCcCCCCCCCc
Confidence 34 799999998763
No 44
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.68 E-value=1.3 Score=26.13 Aligned_cols=37 Identities=24% Similarity=0.661 Sum_probs=27.2
Q ss_pred ccchhhhhhhcc-----CCCccCcccccc----cccccccCccccc
Q psy11901 55 ESCKICRQKVHQ-----VGSHYCQACAYK----KGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~YCq~CAYk----kGiCamCGKki~d 91 (100)
..|.||...+.. =||.||..|... ...|.+|...|..
T Consensus 16 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 378888765443 378899999753 3689999998763
No 45
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=59.09 E-value=1.2 Score=25.81 Aligned_cols=37 Identities=30% Similarity=0.749 Sum_probs=27.2
Q ss_pred ccchhhhhhhc------------cCCCccCccccc----ccccccccCccccc
Q psy11901 55 ESCKICRQKVH------------QVGSHYCQACAY----KKGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~------------q~g~~YCq~CAY----kkGiCamCGKki~d 91 (100)
..|.||...+. .=||.||..|.. ....|.+|...+..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 47888876432 237889999984 45689999988763
No 46
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.30 E-value=2.9 Score=24.76 Aligned_cols=38 Identities=13% Similarity=0.385 Sum_probs=28.4
Q ss_pred CccchhhhhhhccC--------CCccCccccc----ccccccccCccccc
Q psy11901 54 FESCKICRQKVHQV--------GSHYCQACAY----KKGICAMCGKKLLD 91 (100)
Q Consensus 54 ~~~C~~CK~~v~q~--------g~~YCq~CAY----kkGiCamCGKki~d 91 (100)
...|.||-..+..+ ||.||..|.. ....|.+|-..+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45899998765543 7788999975 35689999887754
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.85 E-value=5.9 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.474 Sum_probs=26.9
Q ss_pred ccchhhhhhhc------cCCCccCccccccc--ccccccCcccc
Q psy11901 55 ESCKICRQKVH------QVGSHYCQACAYKK--GICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~------q~g~~YCq~CAYkk--GiCamCGKki~ 90 (100)
-.|.||...+. .=||.||..|...- ..|.+|...+.
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 36888865432 34889999998655 67999999874
No 48
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.76 E-value=3.1 Score=24.56 Aligned_cols=37 Identities=19% Similarity=0.606 Sum_probs=27.6
Q ss_pred ccchhhhhhhc------cCCCccCcccccc----cccccccCccccc
Q psy11901 55 ESCKICRQKVH------QVGSHYCQACAYK----KGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~------q~g~~YCq~CAYk----kGiCamCGKki~d 91 (100)
..|.||...+. .=||.||..|... ...|.+|...+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 47888876543 4478899999743 5689999998864
No 49
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.50 E-value=2.3 Score=25.53 Aligned_cols=36 Identities=28% Similarity=0.644 Sum_probs=26.8
Q ss_pred ccchhhhhhhcc---------CCCccCccccccc-------ccccccCcccc
Q psy11901 55 ESCKICRQKVHQ---------VGSHYCQACAYKK-------GICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~q---------~g~~YCq~CAYkk-------GiCamCGKki~ 90 (100)
..|.||...+.. =||.||..|...- ..|.+|...+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 468888765543 3788999997542 68999999764
No 50
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=56.27 E-value=2.7 Score=24.36 Aligned_cols=37 Identities=22% Similarity=0.537 Sum_probs=26.2
Q ss_pred ccchhhhhhhc--------cCCCccCccccc----ccccccccCccccc
Q psy11901 55 ESCKICRQKVH--------QVGSHYCQACAY----KKGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~--------q~g~~YCq~CAY----kkGiCamCGKki~d 91 (100)
..|.||...+. .=||.||..|.. ....|.+|-..|..
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 47888855442 227788999986 35789999888753
No 51
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=56.04 E-value=1.6 Score=30.77 Aligned_cols=36 Identities=22% Similarity=0.675 Sum_probs=24.3
Q ss_pred cchhhhhhhc--------cCCCccCccccccc----ccccccCccccc
Q psy11901 56 SCKICRQKVH--------QVGSHYCQACAYKK----GICAMCGKKLLD 91 (100)
Q Consensus 56 ~C~~CK~~v~--------q~g~~YCq~CAYkk----GiCamCGKki~d 91 (100)
+|..|+..+. .+|..||..|..+. ++|+.|++.|..
T Consensus 34 ~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp BCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred ccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 6777776653 24677888887543 268888888863
No 52
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.67 E-value=2.5 Score=24.87 Aligned_cols=42 Identities=19% Similarity=0.646 Sum_probs=30.2
Q ss_pred ccchhhhhhhc--------cCCCccCcccccc----cccccccCcccccccccc
Q psy11901 55 ESCKICRQKVH--------QVGSHYCQACAYK----KGICAMCGKKLLDVKNYK 96 (100)
Q Consensus 55 ~~C~~CK~~v~--------q~g~~YCq~CAYk----kGiCamCGKki~dt~~yk 96 (100)
..|.||-..+. .=||.||..|..+ ...|.+|...|.++....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 47888876643 2367788888753 568999999998776543
No 53
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.19 E-value=3 Score=23.84 Aligned_cols=23 Identities=26% Similarity=0.768 Sum_probs=17.8
Q ss_pred ccchhhhhhhccC-----CCccCccccc
Q psy11901 55 ESCKICRQKVHQV-----GSHYCQACAY 77 (100)
Q Consensus 55 ~~C~~CK~~v~q~-----g~~YCq~CAY 77 (100)
..|.||...+..+ ||.||..|..
T Consensus 21 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~ 48 (63)
T 2ysj_A 21 VICPICLDILQKPVTIDCGHNFCLKCIT 48 (63)
T ss_dssp CBCTTTCSBCSSCEECTTSSEECHHHHH
T ss_pred CCCCcCCchhCCeEEeCCCCcchHHHHH
Confidence 4899998766554 8899999974
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=54.34 E-value=2.2 Score=27.11 Aligned_cols=37 Identities=30% Similarity=0.777 Sum_probs=27.7
Q ss_pred ccchhhhhhhccC------------CCccCccccc----ccccccccCccccc
Q psy11901 55 ESCKICRQKVHQV------------GSHYCQACAY----KKGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~q~------------g~~YCq~CAY----kkGiCamCGKki~d 91 (100)
..|.||...+..+ ||.||..|.. ....|.+|.+.+..
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 4788887654333 8899999984 45689999998863
No 55
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=54.27 E-value=3.8 Score=24.38 Aligned_cols=37 Identities=24% Similarity=0.702 Sum_probs=25.9
Q ss_pred ccchhhhhhhcc----C--CCccCccccccc------ccccccCccccc
Q psy11901 55 ESCKICRQKVHQ----V--GSHYCQACAYKK------GICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~q----~--g~~YCq~CAYkk------GiCamCGKki~d 91 (100)
-.|.||...+.. + ||.||..|...- ..|.+|...+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 367788664432 2 899999997332 489999997653
No 56
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=52.13 E-value=2.8 Score=26.91 Aligned_cols=37 Identities=22% Similarity=0.662 Sum_probs=27.9
Q ss_pred ccchhhhhhhcc-----CCCccCcccccc-----cccccccCccccc
Q psy11901 55 ESCKICRQKVHQ-----VGSHYCQACAYK-----KGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~YCq~CAYk-----kGiCamCGKki~d 91 (100)
-.|.||...+.. =||.||..|... ...|++|...+..
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 378888765443 388999999752 5689999998764
No 57
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=51.84 E-value=4.3 Score=25.08 Aligned_cols=38 Identities=24% Similarity=0.663 Sum_probs=29.8
Q ss_pred ccchhhhhhhcc-----CCCc-cCcccccccccccccCcccccc
Q psy11901 55 ESCKICRQKVHQ-----VGSH-YCQACAYKKGICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~-YCq~CAYkkGiCamCGKki~dt 92 (100)
..|.||-..... =||. +|..|+..-..|.+|-..|..+
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCe
Confidence 478888764432 3666 8999999888999999998754
No 58
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=49.76 E-value=3.5 Score=26.73 Aligned_cols=38 Identities=29% Similarity=0.701 Sum_probs=28.2
Q ss_pred ccchhhhhhhcc-----CCCccCccccccc-----ccccccCcccccc
Q psy11901 55 ESCKICRQKVHQ-----VGSHYCQACAYKK-----GICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~YCq~CAYkk-----GiCamCGKki~dt 92 (100)
-.|.||...+.. =||.||..|...- ..|.+|...+...
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 478888765443 3888999998542 3899999988753
No 59
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=49.05 E-value=5.1 Score=24.10 Aligned_cols=32 Identities=28% Similarity=0.600 Sum_probs=13.1
Q ss_pred cchhhhhhhcc------CCCccCccccccc--ccccccCc
Q psy11901 56 SCKICRQKVHQ------VGSHYCQACAYKK--GICAMCGK 87 (100)
Q Consensus 56 ~C~~CK~~v~q------~g~~YCq~CAYkk--GiCamCGK 87 (100)
+|..|...+.. +|..||..|-.+. -.|+.||.
T Consensus 36 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~ 75 (81)
T 1a7i_A 36 LCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQ 75 (81)
T ss_dssp ECSSSCCEECSSCCEEETTEEECSHHHHHHCC--------
T ss_pred ccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCC
Confidence 56666665532 2345676665443 35666653
No 60
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=47.45 E-value=3.5 Score=28.77 Aligned_cols=27 Identities=26% Similarity=0.731 Sum_probs=19.4
Q ss_pred CcccCccchhhhhhhccCCCccCcccc
Q psy11901 50 YTQKFESCKICRQKVHQVGSHYCQACA 76 (100)
Q Consensus 50 y~~~~~~C~~CK~~v~q~g~~YCq~CA 76 (100)
|+.+..+|.||....-...+.||..|-
T Consensus 53 ~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 53 FGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp TSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred CCCcCCceEEcCCCCCcccceehHhhh
Confidence 444467999999555444689999886
No 61
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=46.05 E-value=3.7 Score=26.08 Aligned_cols=37 Identities=16% Similarity=0.575 Sum_probs=27.4
Q ss_pred ccchhhhhhhc------cCCCccCccccccc----ccccccCccccc
Q psy11901 55 ESCKICRQKVH------QVGSHYCQACAYKK----GICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~------q~g~~YCq~CAYkk----GiCamCGKki~d 91 (100)
-.|.||...+. .=||.||..|...- ..|.+|+..+..
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 37888876432 44889999997543 789999998874
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=44.85 E-value=2.4 Score=25.09 Aligned_cols=38 Identities=26% Similarity=0.725 Sum_probs=26.5
Q ss_pred ccchhhhhhhc-------cCCCc-cCcccccccc----cccccCcccccc
Q psy11901 55 ESCKICRQKVH-------QVGSH-YCQACAYKKG----ICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v~-------q~g~~-YCq~CAYkkG----iCamCGKki~dt 92 (100)
..|.||-.... .=||- +|..|+-+-- .|.+|-..|.++
T Consensus 8 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 8 KPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp SBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 47888866321 22444 7999986554 899999998754
No 63
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=44.74 E-value=5.2 Score=25.46 Aligned_cols=36 Identities=33% Similarity=0.745 Sum_probs=26.4
Q ss_pred Cccchhhhh-hhccCCCccCcccccccccccccCccccc
Q psy11901 54 FESCKICRQ-KVHQVGSHYCQACAYKKGICAMCGKKLLD 91 (100)
Q Consensus 54 ~~~C~~CK~-~v~q~g~~YCq~CAYkkGiCamCGKki~d 91 (100)
...|.||.. +......|-|..|--+ .||.||-.+.-
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk~r--~CaRCGg~v~l 45 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQTK--FCARCGGRVSL 45 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTCCE--ECTTSEEEEES
T ss_pred cchhhhhccceeccCCCccccccCCe--eecccCCEeee
Confidence 358999954 6666566888877544 89999988763
No 64
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=44.39 E-value=6.5 Score=21.51 Aligned_cols=36 Identities=22% Similarity=0.577 Sum_probs=23.7
Q ss_pred ccchhhhhhhcc---------CCCccCcccccc----cccccccCcccc
Q psy11901 55 ESCKICRQKVHQ---------VGSHYCQACAYK----KGICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~q---------~g~~YCq~CAYk----kGiCamCGKki~ 90 (100)
..|.||...+.. =||.||..|..+ ...|.+|...|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356777655422 367888888753 367999987663
No 65
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=43.12 E-value=3.7 Score=28.25 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=28.3
Q ss_pred ccchhhhhhhcc-----CCCccCccccccc-----ccccccCcccccc
Q psy11901 55 ESCKICRQKVHQ-----VGSHYCQACAYKK-----GICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v~q-----~g~~YCq~CAYkk-----GiCamCGKki~dt 92 (100)
-.|.||...+.. =||.||..|...- ..|.+|...+...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 479999876543 3888999997432 3799999988743
No 66
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=42.66 E-value=6.1 Score=27.08 Aligned_cols=31 Identities=16% Similarity=0.547 Sum_probs=24.4
Q ss_pred CCccCcccccc-----cccccccCcccccccccccc
Q psy11901 68 GSHYCQACAYK-----KGICAMCGKKLLDVKNYKQS 98 (100)
Q Consensus 68 g~~YCq~CAYk-----kGiCamCGKki~dt~~ykqS 98 (100)
.|-+|..||+. ...|.||..+|.++......
T Consensus 21 kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~ 56 (101)
T 3vk6_A 21 KHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRG 56 (101)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGG
T ss_pred cccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccC
Confidence 57899999954 36999999999988765543
No 67
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=42.57 E-value=7.9 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=16.0
Q ss_pred ccchhhhhhhccCCCccCcccc
Q psy11901 55 ESCKICRQKVHQVGSHYCQACA 76 (100)
Q Consensus 55 ~~C~~CK~~v~q~g~~YCq~CA 76 (100)
=+|..|+ +...|-.-||+.|-
T Consensus 14 WkC~~C~-~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 14 WKCTSCN-EMNPPLPSHCNRCW 34 (46)
T ss_dssp EECTTTC-CEECSSCSSCTTTC
T ss_pred Eeccccc-ccCCCccchhhHHH
Confidence 3788998 55556779999984
No 68
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=42.18 E-value=4.9 Score=25.00 Aligned_cols=37 Identities=30% Similarity=0.699 Sum_probs=26.9
Q ss_pred ccchhhhhhhc------cCCCccCcccccc----cccccccCccccc
Q psy11901 55 ESCKICRQKVH------QVGSHYCQACAYK----KGICAMCGKKLLD 91 (100)
Q Consensus 55 ~~C~~CK~~v~------q~g~~YCq~CAYk----kGiCamCGKki~d 91 (100)
-.|.||...+. .=||.||..|... ...|.+|...+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 37888876432 3488899999743 4689999998763
No 69
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=41.11 E-value=3.8 Score=28.75 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=9.7
Q ss_pred cccccCcccccc
Q psy11901 81 ICAMCGKKLLDV 92 (100)
Q Consensus 81 iCamCGKki~dt 92 (100)
+|+.||+.|.+.
T Consensus 117 ~C~~C~~~I~~~ 128 (192)
T 1b8t_A 117 GCPRCGQAVYAA 128 (192)
T ss_dssp ECTTTSCEECSS
T ss_pred cCCCCCCEecCc
Confidence 599999999753
No 70
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=39.98 E-value=8 Score=31.48 Aligned_cols=39 Identities=26% Similarity=0.687 Sum_probs=30.4
Q ss_pred Cccchhhhhhhcc-----CCCccCccccc-----ccccccccCcccccc
Q psy11901 54 FESCKICRQKVHQ-----VGSHYCQACAY-----KKGICAMCGKKLLDV 92 (100)
Q Consensus 54 ~~~C~~CK~~v~q-----~g~~YCq~CAY-----kkGiCamCGKki~dt 92 (100)
...|.||-..... =||.+|..|.. ....|++|...+...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4689999775433 38899999986 468999999988753
No 71
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.85 E-value=22 Score=20.55 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=6.7
Q ss_pred cccccCccccccc
Q psy11901 81 ICAMCGKKLLDVK 93 (100)
Q Consensus 81 iCamCGKki~dt~ 93 (100)
.|+.|++.|.+..
T Consensus 37 ~C~~C~~~L~~~~ 49 (72)
T 1x4l_A 37 NCKKCSLSLVGRG 49 (72)
T ss_dssp BCSSSCCBCTTSC
T ss_pred EeccCCCcCCCCc
Confidence 4555555555433
No 72
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=36.25 E-value=9.7 Score=23.52 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=15.9
Q ss_pred ccchhhhhhhccCCCccCcccc
Q psy11901 55 ESCKICRQKVHQVGSHYCQACA 76 (100)
Q Consensus 55 ~~C~~CK~~v~q~g~~YCq~CA 76 (100)
-+|..|+ +.+.|-.-||+.|-
T Consensus 12 WkC~~C~-k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 12 WQCTECK-KFNSPSKRYCFRCW 32 (53)
T ss_dssp EECSSSC-CEECSSCCBCTTTC
T ss_pred eeccccc-ccCCCccchhHHHH
Confidence 3788998 55555679999984
No 73
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=35.03 E-value=15 Score=28.93 Aligned_cols=38 Identities=29% Similarity=0.660 Sum_probs=31.4
Q ss_pred ccchhhhhhhc-----cCCCc-cCcccccccccccccCcccccc
Q psy11901 55 ESCKICRQKVH-----QVGSH-YCQACAYKKGICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v~-----q~g~~-YCq~CAYkkGiCamCGKki~dt 92 (100)
..|.||-.... .=||. +|..|+..-..|.+|-..|..+
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGT 339 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEE
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCe
Confidence 58999987543 34788 9999999999999999998754
No 74
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=32.62 E-value=12 Score=26.59 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=27.1
Q ss_pred Cccchhhhhhhc-----cCCCccCcccccc----cc-cccccCcccc
Q psy11901 54 FESCKICRQKVH-----QVGSHYCQACAYK----KG-ICAMCGKKLL 90 (100)
Q Consensus 54 ~~~C~~CK~~v~-----q~g~~YCq~CAYk----kG-iCamCGKki~ 90 (100)
.-.|.||..-.. .-||.||..|-.. .+ .|++|+..+.
T Consensus 208 ~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 208 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp TTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred ccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 458999976443 3499999999642 23 3999999885
No 75
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.87 E-value=4.2 Score=23.57 Aligned_cols=38 Identities=24% Similarity=0.652 Sum_probs=27.7
Q ss_pred ccchhhhhhh----ccCCCccCccccc----ccccccccCcccccc
Q psy11901 55 ESCKICRQKV----HQVGSHYCQACAY----KKGICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v----~q~g~~YCq~CAY----kkGiCamCGKki~dt 92 (100)
..|.||.... ..=||.||..|.. ....|.+|...|...
T Consensus 16 ~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4788887653 2247889999986 457899999888743
No 76
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=30.84 E-value=13 Score=20.49 Aligned_cols=8 Identities=50% Similarity=1.207 Sum_probs=7.0
Q ss_pred hhcCCCcc
Q psy11901 45 ARFNPYTQ 52 (100)
Q Consensus 45 ~r~~Py~~ 52 (100)
+||.||++
T Consensus 19 nrfepY~N 26 (30)
T 2ot8_C 19 NRFEPYAN 26 (30)
T ss_pred cccccccC
Confidence 79999986
No 77
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.28 E-value=32 Score=20.15 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=7.1
Q ss_pred cccccCcccccc
Q psy11901 81 ICAMCGKKLLDV 92 (100)
Q Consensus 81 iCamCGKki~dt 92 (100)
.|+.|++.|.+.
T Consensus 38 ~C~~C~~~L~~~ 49 (76)
T 2cu8_A 38 KCERCSKTLTPG 49 (76)
T ss_dssp BCSSSCCBCCTT
T ss_pred CCCCCCCccCCC
Confidence 456666666544
No 78
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=29.54 E-value=33 Score=19.44 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=7.2
Q ss_pred cccccCcccccc
Q psy11901 81 ICAMCGKKLLDV 92 (100)
Q Consensus 81 iCamCGKki~dt 92 (100)
.|+.|++.|.+.
T Consensus 33 ~C~~C~~~L~~~ 44 (66)
T 1nyp_A 33 VCAKCEKPFLGH 44 (66)
T ss_dssp BCTTTCCBCSSS
T ss_pred EECCCCCCCCCC
Confidence 466666666543
No 79
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.36 E-value=16 Score=22.00 Aligned_cols=22 Identities=32% Similarity=0.791 Sum_probs=18.9
Q ss_pred cchhhhhhhccCCCccCcccccc
Q psy11901 56 SCKICRQKVHQVGSHYCQACAYK 78 (100)
Q Consensus 56 ~C~~CK~~v~q~g~~YCq~CAYk 78 (100)
.|..|...++. |+.+|..|-|+
T Consensus 16 iCpkC~a~~~~-gaw~CrKCG~~ 37 (51)
T 3j21_g 16 VCLRCGATNPW-GAKKCRKCGYK 37 (51)
T ss_dssp ECTTTCCEECT-TCSSCSSSSSC
T ss_pred cCCCCCCcCCC-CceecCCCCCc
Confidence 89999998886 89999988776
No 80
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=26.96 E-value=5.9 Score=23.35 Aligned_cols=38 Identities=29% Similarity=0.701 Sum_probs=24.2
Q ss_pred ccchhhhhhhc-------cCCCc-cCccccccc----ccccccCcccccc
Q psy11901 55 ESCKICRQKVH-------QVGSH-YCQACAYKK----GICAMCGKKLLDV 92 (100)
Q Consensus 55 ~~C~~CK~~v~-------q~g~~-YCq~CAYkk----GiCamCGKki~dt 92 (100)
..|.||-.... .=||. +|..|+-.- ..|.+|-..|.++
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 46777754322 22444 588888543 3599999998754
No 81
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=26.14 E-value=18 Score=21.31 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=23.9
Q ss_pred cchhhhhhhcc------CCCccCc-cccccc--ccccccCccc
Q psy11901 56 SCKICRQKVHQ------VGSHYCQ-ACAYKK--GICAMCGKKL 89 (100)
Q Consensus 56 ~C~~CK~~v~q------~g~~YCq-~CAYkk--GiCamCGKki 89 (100)
+|..|...+.. +|..||. .|-.+. -.|+.||..+
T Consensus 29 ~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~ 71 (76)
T 1iml_A 29 KCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAE 71 (76)
T ss_dssp BCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSS
T ss_pred CccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCce
Confidence 67777776543 3567999 687653 5899999654
No 82
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=25.88 E-value=17 Score=24.23 Aligned_cols=11 Identities=45% Similarity=1.238 Sum_probs=9.2
Q ss_pred ccccccCcccc
Q psy11901 80 GICAMCGKKLL 90 (100)
Q Consensus 80 GiCamCGKki~ 90 (100)
|+|..||..|-
T Consensus 82 g~C~~Cg~~I~ 92 (112)
T 2kq9_A 82 GTCVKCGKRIS 92 (112)
T ss_dssp SEETTTTEECC
T ss_pred CeeCCCCCccc
Confidence 68999998874
No 83
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.76 E-value=20 Score=15.72 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=8.2
Q ss_pred cccccCccccccc
Q psy11901 81 ICAMCGKKLLDVK 93 (100)
Q Consensus 81 iCamCGKki~dt~ 93 (100)
.|..||+....-+
T Consensus 4 ~C~~C~k~f~~~~ 16 (30)
T 1klr_A 4 QCQYCEFRSADSS 16 (30)
T ss_dssp CCSSSSCCCSCSH
T ss_pred cCCCCCCccCCHH
Confidence 5777777765433
No 84
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=24.64 E-value=13 Score=23.30 Aligned_cols=36 Identities=25% Similarity=0.647 Sum_probs=26.4
Q ss_pred ccchhhhhhhc------cCCCccCcccccc-----cccccccCcccc
Q psy11901 55 ESCKICRQKVH------QVGSHYCQACAYK-----KGICAMCGKKLL 90 (100)
Q Consensus 55 ~~C~~CK~~v~------q~g~~YCq~CAYk-----kGiCamCGKki~ 90 (100)
-.|.||...+. .=||.||..|... ...|++|...+.
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 47888876432 2378899999753 258999998875
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=24.41 E-value=27 Score=18.18 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=9.9
Q ss_pred ccccccCcccccc
Q psy11901 80 GICAMCGKKLLDV 92 (100)
Q Consensus 80 GiCamCGKki~dt 92 (100)
..|+.|||.|-..
T Consensus 4 ~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 4 PNCARCGKIVYPT 16 (31)
T ss_dssp CBCSSSCSBCCGG
T ss_pred CcCCccCCEEecc
Confidence 4799999988543
No 86
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.16 E-value=16 Score=16.05 Aligned_cols=12 Identities=33% Similarity=1.126 Sum_probs=6.8
Q ss_pred cccccCcccccc
Q psy11901 81 ICAMCGKKLLDV 92 (100)
Q Consensus 81 iCamCGKki~dt 92 (100)
.|..||+....-
T Consensus 4 ~C~~C~k~f~~~ 15 (26)
T 2lvu_A 4 VCERCGKRFVQS 15 (26)
Confidence 466677655443
No 87
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.81 E-value=40 Score=19.27 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=6.1
Q ss_pred cccccCcccccc
Q psy11901 81 ICAMCGKKLLDV 92 (100)
Q Consensus 81 iCamCGKki~dt 92 (100)
.|+.|++.|.+.
T Consensus 35 ~C~~C~~~L~~~ 46 (72)
T 1wyh_A 35 LCSGCEQPLGSR 46 (72)
T ss_dssp BCTTTCCBTTTS
T ss_pred eECCCCCcCCCC
Confidence 355555555443
No 88
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.73 E-value=26 Score=15.21 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=7.8
Q ss_pred cccccCccccccc
Q psy11901 81 ICAMCGKKLLDVK 93 (100)
Q Consensus 81 iCamCGKki~dt~ 93 (100)
.|..||+......
T Consensus 4 ~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 4 KCPHCDKKFNQVG 16 (29)
T ss_dssp CCSSCCCCCCTTT
T ss_pred cCCCCCcccCCHH
Confidence 4677777655433
No 89
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=23.60 E-value=23 Score=25.71 Aligned_cols=14 Identities=29% Similarity=0.781 Sum_probs=11.1
Q ss_pred cccccccccCcccc
Q psy11901 77 YKKGICAMCGKKLL 90 (100)
Q Consensus 77 YkkGiCamCGKki~ 90 (100)
.+.|.|++||..+.
T Consensus 18 ~Q~g~C~IC~~~l~ 31 (157)
T 1e7l_A 18 AQNGKCLICQRELN 31 (157)
T ss_dssp HTTTBCTTTCCBCC
T ss_pred HhCCcCcccCCccc
Confidence 45689999999864
No 90
>2z5k_B Nuclear RNA export factor 1; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, TAP, NLS; 2.60A {Homo sapiens} PDB: 2z5m_B
Probab=23.12 E-value=21 Score=19.27 Aligned_cols=10 Identities=50% Similarity=1.155 Sum_probs=7.8
Q ss_pred hhhhcCCCcc
Q psy11901 43 SKARFNPYTQ 52 (100)
Q Consensus 43 ~k~r~~Py~~ 52 (100)
.+.||+||+.
T Consensus 16 ~~~RytPY~~ 25 (30)
T 2z5k_B 16 PRVRYNPYTT 25 (30)
T ss_pred ccccccCccc
Confidence 3579999974
No 91
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.43 E-value=18 Score=16.09 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=6.9
Q ss_pred cccccCcccccc
Q psy11901 81 ICAMCGKKLLDV 92 (100)
Q Consensus 81 iCamCGKki~dt 92 (100)
.|..||+....-
T Consensus 5 ~C~~C~k~f~~~ 16 (30)
T 2lvr_A 5 VCIHCQRQFADP 16 (30)
Confidence 466666665443
No 92
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.50 E-value=62 Score=18.66 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=7.9
Q ss_pred cccccCccccccc
Q psy11901 81 ICAMCGKKLLDVK 93 (100)
Q Consensus 81 iCamCGKki~dt~ 93 (100)
.|+.|++.|.+..
T Consensus 41 ~C~~C~~~L~~~~ 53 (77)
T 1g47_A 41 VCAQCFQQFPEGL 53 (77)
T ss_dssp CCTTTCCCCGGGC
T ss_pred eECCCCCCCCCCC
Confidence 4666777666543
No 93
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.12 E-value=18 Score=16.15 Aligned_cols=12 Identities=42% Similarity=1.016 Sum_probs=7.0
Q ss_pred cccccCcccccc
Q psy11901 81 ICAMCGKKLLDV 92 (100)
Q Consensus 81 iCamCGKki~dt 92 (100)
.|..||+....-
T Consensus 4 ~C~~C~k~f~~~ 15 (29)
T 2lvt_A 4 QCVMCGKAFTQA 15 (29)
Confidence 466677665443
No 94
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.18 E-value=22 Score=15.48 Aligned_cols=12 Identities=17% Similarity=0.861 Sum_probs=7.6
Q ss_pred cccccCcccccc
Q psy11901 81 ICAMCGKKLLDV 92 (100)
Q Consensus 81 iCamCGKki~dt 92 (100)
.|..||+.....
T Consensus 3 ~C~~C~k~f~~~ 14 (27)
T 1znf_A 3 KCGLCERSFVEK 14 (27)
T ss_dssp BCSSSCCBCSSH
T ss_pred cCCCCCCcCCCH
Confidence 467788766543
No 95
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=21.91 E-value=28 Score=24.54 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=9.6
Q ss_pred ccccccCcccc
Q psy11901 80 GICAMCGKKLL 90 (100)
Q Consensus 80 GiCamCGKki~ 90 (100)
|+|..||..|-
T Consensus 112 g~C~~Cg~~Ip 122 (151)
T 1tjl_A 112 GYCESCGVEIG 122 (151)
T ss_dssp SBCSSSSCBCC
T ss_pred ceeCCCCCcch
Confidence 79999999884
No 96
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=21.78 E-value=29 Score=23.66 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=9.6
Q ss_pred ccccccCcccc
Q psy11901 80 GICAMCGKKLL 90 (100)
Q Consensus 80 GiCamCGKki~ 90 (100)
|+|..||..|-
T Consensus 57 G~C~~CGe~Ip 67 (108)
T 2kgo_A 57 DECEECGAPIP 67 (108)
T ss_dssp SBCTTTCCBCC
T ss_pred ceecccCCccc
Confidence 79999999885
No 97
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.66 E-value=26 Score=15.54 Aligned_cols=13 Identities=15% Similarity=0.695 Sum_probs=7.7
Q ss_pred cccccCccccccc
Q psy11901 81 ICAMCGKKLLDVK 93 (100)
Q Consensus 81 iCamCGKki~dt~ 93 (100)
.|..||+.....+
T Consensus 4 ~C~~C~k~f~~~~ 16 (30)
T 1paa_A 4 ACGLCNRAFTRRD 16 (30)
T ss_dssp BCTTTCCBCSSSH
T ss_pred CCcccCcccCChH
Confidence 4667777655433
No 98
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.51 E-value=27 Score=21.09 Aligned_cols=24 Identities=13% Similarity=0.589 Sum_probs=17.7
Q ss_pred CCCccCccccc----ccccccccCcccc
Q psy11901 67 VGSHYCQACAY----KKGICAMCGKKLL 90 (100)
Q Consensus 67 ~g~~YCq~CAY----kkGiCamCGKki~ 90 (100)
=||.|+..|.. ....|.+|-..+.
T Consensus 48 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 36778888864 4578999987764
No 99
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.74 E-value=17 Score=15.94 Aligned_cols=11 Identities=36% Similarity=0.918 Sum_probs=6.9
Q ss_pred cccccCccccc
Q psy11901 81 ICAMCGKKLLD 91 (100)
Q Consensus 81 iCamCGKki~d 91 (100)
.|..||+....
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 2m0f_A 4 KCRECGKQFTT 14 (29)
T ss_dssp ECTTTSCEESC
T ss_pred cCCCCCCccCC
Confidence 46777776543
No 100
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.37 E-value=25 Score=26.50 Aligned_cols=32 Identities=28% Similarity=0.725 Sum_probs=23.3
Q ss_pred hhcCCCcccCccchhhhhhhc-----cCCCccCcccc
Q psy11901 45 ARFNPYTQKFESCKICRQKVH-----QVGSHYCQACA 76 (100)
Q Consensus 45 ~r~~Py~~~~~~C~~CK~~v~-----q~g~~YCq~CA 76 (100)
..+.-|+.....|..|.+.|. +-..+||..|-
T Consensus 226 ~~~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 226 TRHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred ceEEEcccCCCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 466778776789999988764 23567888874
No 101
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.33 E-value=19 Score=15.95 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=7.5
Q ss_pred cccccCcccccc
Q psy11901 81 ICAMCGKKLLDV 92 (100)
Q Consensus 81 iCamCGKki~dt 92 (100)
.|..||+....-
T Consensus 5 ~C~~C~k~f~~~ 16 (27)
T 2kvh_A 5 SCSLCPQRSRDF 16 (27)
T ss_dssp ECSSSSCEESSH
T ss_pred cCCCcChhhCCH
Confidence 477777765543
No 102
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=20.30 E-value=26 Score=26.45 Aligned_cols=32 Identities=25% Similarity=0.747 Sum_probs=22.8
Q ss_pred hhcCCCcccCccchhhhhhhc-----cCCCccCcccc
Q psy11901 45 ARFNPYTQKFESCKICRQKVH-----QVGSHYCQACA 76 (100)
Q Consensus 45 ~r~~Py~~~~~~C~~CK~~v~-----q~g~~YCq~CA 76 (100)
.++.-|+.....|..|.+.|. +-+.+||..|-
T Consensus 233 ~~~~VygR~G~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 233 NELQVYGKTGEKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp GGCSSTTCTTSBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred ceEEEccCCCCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 456778766788999988764 23557888873
Done!