RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11901
         (100 letters)



>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
          {Escherichia coli [TaxId: 562]}
          Length = 144

 Score = 29.8 bits (67), Expect = 0.033
 Identities = 7/50 (14%), Positives = 17/50 (34%)

Query: 37 NKALTASKARFNPYTQKFESCKICRQKVHQVGSHYCQACAYKKGICAMCG 86
            A+ A+     PY++      +  +        Y +  A+   +  + G
Sbjct: 43 QAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQG 92


>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli
          [TaxId: 562]}
          Length = 40

 Score = 21.9 bits (47), Expect = 7.2
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 5/35 (14%)

Query: 46 RFNPYTQKFESCKIC-----RQKVHQVGSHYCQAC 75
          RF  + +  E C+ C     +  +     ++C  C
Sbjct: 4  RFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.130    0.409 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,824
Number of extensions: 15998
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 27
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)