Query psy11902
Match_columns 336
No_of_seqs 136 out of 235
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 21:53:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07882 RHD-n_TonEBP N-termina 100.0 8.2E-67 1.8E-71 458.8 16.1 160 92-255 2-161 (161)
2 cd07927 RHD-n_NFAT_like N-term 100.0 8.9E-66 1.9E-70 452.2 15.9 161 91-255 1-161 (161)
3 cd07881 RHD-n_NFAT N-terminal 100.0 2.2E-62 4.8E-67 431.1 14.3 168 84-256 4-175 (175)
4 cd07827 RHD-n N-terminal sub-d 100.0 1.1E-57 2.3E-62 407.3 14.9 153 91-255 1-174 (174)
5 cd07885 RHD-n_RelA N-terminal 100.0 1.3E-54 2.9E-59 385.2 15.5 150 91-255 1-169 (169)
6 cd07933 RHD-n_c-Rel N-terminal 100.0 1E-54 2.2E-59 386.8 14.4 151 91-255 1-172 (172)
7 cd07887 RHD-n_Dorsal_Dif N-ter 100.0 2E-54 4.3E-59 385.4 13.8 152 91-255 1-173 (173)
8 cd07934 RHD-n_NFkB2 N-terminal 100.0 2.2E-54 4.7E-59 388.6 13.9 152 91-255 1-185 (185)
9 cd07883 RHD-n_NFkB N-terminal 100.0 2.6E-54 5.5E-59 391.4 13.9 151 91-255 1-197 (197)
10 cd07886 RHD-n_RelB N-terminal 100.0 8.6E-54 1.9E-58 381.0 13.9 151 91-255 1-172 (172)
11 PF00554 RHD: Rel homology dom 100.0 9.4E-54 2E-58 379.8 13.5 148 93-254 1-169 (169)
12 cd07935 RHD-n_NFkB1 N-terminal 100.0 2.2E-53 4.7E-58 386.2 13.8 151 91-255 1-202 (202)
13 cd07884 RHD-n_Relish N-termina 100.0 5.4E-53 1.2E-57 372.1 14.5 149 91-255 1-159 (159)
14 cd01178 IPT_NFAT IPT domain of 99.8 1.5E-20 3.3E-25 156.1 5.5 58 259-336 1-59 (101)
15 cd01177 IPT_NFkappaB IPT domai 99.8 5.4E-20 1.2E-24 153.1 5.5 57 260-336 1-58 (102)
16 cd00602 IPT_TF IPT domain of e 99.7 2.5E-17 5.3E-22 136.5 5.1 57 260-336 1-58 (101)
17 cd01175 IPT_COE IPT domain of 95.9 0.0074 1.6E-07 49.7 3.3 43 260-326 1-43 (85)
18 cd00102 IPT Immunoglobulin-lik 94.8 0.036 7.9E-07 42.1 3.6 35 260-314 1-37 (89)
19 smart00429 IPT ig-like, plexin 94.3 0.074 1.6E-06 41.2 4.4 37 259-315 1-37 (90)
20 cd00603 IPT_PCSR IPT domain of 85.7 1.2 2.5E-05 34.6 3.8 34 260-313 1-37 (90)
21 PF01833 TIG: IPT/TIG domain; 83.6 1.6 3.6E-05 32.4 3.7 36 260-315 1-39 (85)
22 cd01179 IPT_plexin_repeat2 Sec 77.4 3.4 7.4E-05 32.4 3.8 20 260-279 1-20 (85)
23 cd01180 IPT_plexin_repeat1 Fir 74.6 4.4 9.5E-05 32.6 3.8 20 260-279 1-20 (94)
24 cd01181 IPT_plexin_repeat3 Thi 25.0 91 0.002 25.6 3.4 28 260-288 1-28 (99)
No 1
>cd07882 RHD-n_TonEBP N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the tonicity-responsive enhancer binding protein (TonEBP), also called NFAT5. Mammalian TonEBP regulates the expression of genes in response to tonicity. It plays a pivotal role in urinary concentrating mechanisms in kidney medulla, by triggering the accumulation of osmolytes that enable renal medullary cells to tolerate high levels of urea and salt.
Probab=100.00 E-value=8.2e-67 Score=458.78 Aligned_cols=160 Identities=56% Similarity=0.961 Sum_probs=156.2
Q ss_pred eEEEeeCCccccccceeccCCCCccCCCCCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccCCCccccc
Q psy11902 92 YLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLEK 171 (336)
Q Consensus 92 ~L~I~eQP~~~~RfRY~~EGS~Gsi~g~~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~~t~C~E~ 171 (336)
+|+|+|||++||||||+||||||||++.+++|||||||+||+|||+|+|||||+|++++||||||+||++||++|+|.|.
T Consensus 2 ~L~I~eQP~~~~RaRY~tEGSrGsvk~~s~~~~PtVkl~gy~gp~~l~V~lvT~d~~~rPH~fyq~~k~~Gk~~t~c~E~ 81 (161)
T cd07882 2 ELKILVQPETQHRARYLTEGSRGSVKDRSQQGFPTVKLEGYNKPVVLQVFVGTDSGRVKPHGFYQACKVTGRNTTPCEEV 81 (161)
T ss_pred eeEEEECCchhceEeeeccCcCccccCCCCCcCCeEEEeccCCCEEEEEEEEeCCCCcCCCcceeeeecccCCCccceee
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcchhhhcccCCeeeEEeEEEEecCCCCceEeceeeeeee
Q psy11902 172 KTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHPI 251 (336)
Q Consensus 172 ~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~~~~~~~k~n~VRL~Fqv~i~~~g~g~~~~l~V~S~PI 251 (336)
.++|+.++||+|+|++||+++||||||||+||+|||.|+++++ +++|+|+|||||||||+++ +|..++|||+|+||
T Consensus 82 ~~~gt~v~ev~~~P~~~mta~~d~lGIl~lrn~Dve~r~~~~~---~~~k~t~vRLvFrv~ip~~-~G~~~~lqv~S~pI 157 (161)
T cd07882 82 DVEGTTVIEVPLDPTNNMTISVDCVGILKLRNADVEARIGIAR---SKKKSTRVRLVFRVIIPRK-DGSTLTLQTVSNPI 157 (161)
T ss_pred ccCCcEEEEEEcCCCCceEEEecccceEEeehhchhhhccchh---hcccccEEEEEEEEEecCC-CCCEEeccccccce
Confidence 9999999999999999999999999999999999999999886 8999999999999999998 69999999999999
Q ss_pred ecCC
Q psy11902 252 MCNQ 255 (336)
Q Consensus 252 ~dsK 255 (336)
.|+|
T Consensus 158 ~c~q 161 (161)
T cd07882 158 LCTQ 161 (161)
T ss_pred eecC
Confidence 9986
No 2
>cd07927 RHD-n_NFAT_like N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins and similar proteins. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes that are mainly involved in cell-cell interaction. Upon de-phosphorylation of the nuclear localization signal, NFAT enters the nucleus and acts as a transcription factor; its export from the nucleus is triggered by phosphorylation via export kinases. NFATs play important roles in mediating the immune response, and are found in T cells, B Cells, NK cells, mast cells, and monocytes. NFATs are also found in various non-hematopoietic cell types, where they play roles in development. This group al
Probab=100.00 E-value=8.9e-66 Score=452.22 Aligned_cols=161 Identities=52% Similarity=0.836 Sum_probs=157.0
Q ss_pred eeEEEeeCCccccccceeccCCCCccCCCCCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccCCCcccc
Q psy11902 91 VYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNSTPCLE 170 (336)
Q Consensus 91 p~L~I~eQP~~~~RfRY~~EGS~Gsi~g~~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~~t~C~E 170 (336)
|+|+|+|||++||||||+||||||||+|+++||||||||+||+|+|.|+|||||+|++++|||||||||++||++|+|+|
T Consensus 1 ~~l~I~eQPk~~~RfRY~cEGs~Gsi~~~~~kt~PtVkl~~y~gpa~v~V~lvT~d~p~rpH~h~lvgr~~GK~~~~Cke 80 (161)
T cd07927 1 YELRIEVQPEPHHRARYETEGSRGAVKAPSTGGFPTVKLHGYMEPVGLQVFIGTASGRLKPHAFYQVHRITGKTTTPCKE 80 (161)
T ss_pred CceEEEECCchhceEEeeccCCCCCccCCCCCCCceEEEecccccEEEEEEEEeCCCCCCCCcceeeccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcchhhhcccCCeeeEEeEEEEecCCCCceEeceeeeee
Q psy11902 171 KKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRETEVLQVASHP 250 (336)
Q Consensus 171 ~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~~~~~~~k~n~VRL~Fqv~i~~~g~g~~~~l~V~S~P 250 (336)
..+.|+|++||+++|++||+++|+||||||+||+|||+++++++ +++++|+|||||||||+++ +|..+.|||+|+|
T Consensus 81 ~~i~g~~v~ei~~~p~~~Mt~~f~~lGI~~vrn~Die~~l~~~~---~~~~~trvRLvFrv~ip~~-~g~~~~lq~~s~~ 156 (161)
T cd07927 81 KIIGNTKVLEIPLEPKNNMTATIDCAGILKLRNADIELRKGETD---IKKKNTRARLVFRVHIPEK-DGRIVSLQTASNP 156 (161)
T ss_pred ccccceEEEEecCCCCcceEEEeccceeEEeehhhHHHhhcccc---ccccccEEEEEEEEeecCC-CCCEEEEEecCcc
Confidence 99999999999999999999999999999999999999999877 8999999999999999998 5999999999999
Q ss_pred eecCC
Q psy11902 251 IMCNQ 255 (336)
Q Consensus 251 I~dsK 255 (336)
|.|+|
T Consensus 157 i~csq 161 (161)
T cd07927 157 IECSQ 161 (161)
T ss_pred eEecC
Confidence 99986
No 3
>cd07881 RHD-n_NFAT N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes that are mainly involved in cell-cell interaction. Upon de-phosphorylation of the nuclear localization signal, NFAT enters the nucleus and acts as a transcription factor; its export from the nucleus is triggered by phosphorylation via export kinases. NFATs play important roles in mediating the immune response, and are found in T cells, B Cells, NK cells, mast cells, and monocytes. NFATs are also found in various non-hematopoietic cell types, where they play roles in development.
Probab=100.00 E-value=2.2e-62 Score=431.07 Aligned_cols=168 Identities=45% Similarity=0.729 Sum_probs=162.4
Q ss_pred cccCCCCeeEEEeeCCccccccceeccCCCCccCCCCCCCccEEEEecccC--CeEEEEEEeeCCCC-CCCCccccccee
Q psy11902 84 YSVRDPSVYLEITSQPEQQHRARYQTEGSRGAVKDKSGNGFPVVKLVGYNG--PATLEVFIGTDQGK-IAPHMFYQACRV 160 (336)
Q Consensus 84 ~ps~~~~p~L~I~eQP~~~~RfRY~~EGS~Gsi~g~~~kt~PtVkL~gY~G--pa~i~V~lvT~d~~-~~PH~f~qvhRL 160 (336)
+|++.++.+|+|+.||+++|||||+||||||||+++++ +||+|||+||++ |++||||++|+|++ ++||+||||||+
T Consensus 4 lps~~g~~eL~i~vQPe~hHRA~YeTEGSRGaVK~~sg-g~P~VkL~Gy~e~kp~~LQvFigt~d~r~~~PH~FYQ~hri 82 (175)
T cd07881 4 LPSQSGQYELRIEVQPKPHHRAHYETEGSRGAVKASTG-GHPVVQLHGYMENKPLTLQMFIGTADDRYLRPHAFYQVHRI 82 (175)
T ss_pred CCCcCCCEEEEEEeCCchhhhhhhhccCcccccccCCC-CCceEEEEeecCCcceEEEEEEecCCCcccCCccceEEEEE
Confidence 79999999999999999999999999999999999997 999999999976 99999999997755 899999999999
Q ss_pred cccC-CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcchhhhcccCCeeeEEeEEEEecCCCC
Q psy11902 161 AGKN-STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTR 239 (336)
Q Consensus 161 vGK~-~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~~~~~~~k~n~VRL~Fqv~i~~~g~g 239 (336)
+||+ +|+|+|.+++|+.++||+|+|++||++++||+||||+||.|||+|+++++ +++||++|||+|||+||++ +|
T Consensus 83 tGk~v~T~~~E~~i~gT~vlEv~l~P~~nMt~~iDC~GIlKLRN~DiElRkgetd---~~rk~Tr~RlvFRv~Ip~~-~G 158 (175)
T cd07881 83 TGKTVATASQEIIISNTKVLEIPLLPENNMRASIDCAGILKLRNSDIELRKGETD---IGRKNTRVRLVFRVHIPQP-SG 158 (175)
T ss_pred EcCCCcccceeEecCCCeEEEeeccCCCCeEEEEeehhhhhhhccchhhhcccCC---ccccccEEEEEEEEeccCC-CC
Confidence 9999 89999999999999999999999999999999999999999999999988 8999999999999999998 79
Q ss_pred ceEeceeeeeeeecCCC
Q psy11902 240 ETEVLQVASHPIMCNQP 256 (336)
Q Consensus 240 ~~~~l~V~S~PI~dsK~ 256 (336)
++++|||+|+||.|+|.
T Consensus 159 ~~~sLQv~S~pI~CsQr 175 (175)
T cd07881 159 RVLSLQVASNPIECSQR 175 (175)
T ss_pred CEEEEEecCCceEeccC
Confidence 99999999999999984
No 4
>cd07827 RHD-n N-terminal sub-domain of the Rel homology domain (RHD). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal sub-domain, which may be distantly related to the DNA-binding domain found in P53. The C-terminal sub-domain has an immunoglobulin-like fold and serves as a dimerization module that also binds DNA (see cd00102). The RHD is found in NF-kappa B, nuclear factor of activated T-cells (NFAT), the tonicity-responsive enhancer binding protein (TonEBP), and the arthropod proteins Dorsal and Relish (Rel).
Probab=100.00 E-value=1.1e-57 Score=407.35 Aligned_cols=153 Identities=35% Similarity=0.557 Sum_probs=134.7
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCCC----CCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccC
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDKS----GNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKN 164 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~~----~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~ 164 (336)
|||+|+|||++| |||||+||| |||||+|.+ +||||||||+||+|||+|+|||||+|++++|||| +||||+
T Consensus 1 P~L~I~EQPk~rg~RFRY~cEg~S~Gsi~G~~St~~~kt~PtVkl~ny~Gpa~i~vslvT~d~p~~pHpH----~Lvgk~ 76 (174)
T cd07827 1 PYLEITEQPKQRGHRFRYECEGRSAGSIPGENSTADRKTFPTVKLRNYNGPAKIVVSLVTKDDPPKPHPH----QLVGKT 76 (174)
T ss_pred CceEEEECCCcccceeEeccCCCCCCCCcCCccCCCCCcCCeEEEecCcCCEEEEEEEEECCCCCCCCcc----eeeccc
Confidence 799999999999 999999996 999999974 7999999999999999999999999999999995 599994
Q ss_pred CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcc-----hh---------hhcccCCeeeEEeE
Q psy11902 165 STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDS-----SA---------KNKKRSTRCRMVFR 230 (336)
Q Consensus 165 ~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~-----~~---------~~~~k~n~VRL~Fq 230 (336)
.|. +|+| +|.|.|+++|+++|+||||||+||+||++++.++. .+ ....++|+||||||
T Consensus 77 --~C~----~gvc--~v~v~p~~~m~~~f~nlGIq~v~kkdv~~~l~~r~~~~~~p~~~~~~~~~~~~~~dln~VRLcFq 148 (174)
T cd07827 77 --DCR----DGVC--EVRLGPKNNMTASFNNLGIQCVRKKDVEEALGQRIQLGIDPFMVHKGPEGNASDIDLNRVRLCFQ 148 (174)
T ss_pred --CCC----CCeE--EEEeCCCCCcEEEEcCcceEEEEehhHHHHHHHHHHhcCChhhhhhHHhhhhhhcccceEEEEEE
Confidence 498 7955 56777988999999999999999999988875432 11 13457899999999
Q ss_pred EEEecCCCCceEec-eeeeeeeecCC
Q psy11902 231 TTIIHPGTRETEVL-QVASHPIMCNQ 255 (336)
Q Consensus 231 v~i~~~g~g~~~~l-~V~S~PI~dsK 255 (336)
|||++++++++..| ||+|+||||+|
T Consensus 149 afl~~~~G~~~~~l~PV~S~pI~d~K 174 (174)
T cd07827 149 AFIEDSDGGFTLPLPPVLSNPIYDKK 174 (174)
T ss_pred EEEECCCCCEeeecCCeeccccccCC
Confidence 99999865777878 79999999997
No 5
>cd07885 RHD-n_RelA N-terminal sub-domain of the Rel homology domain (RHD) of RelA. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD domain of the RelA family of transcription factors, categorized as a class II member of the NF-kappa B family. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the ankyrin-repeat containing inhibitory protein I-kappa B, which
Probab=100.00 E-value=1.3e-54 Score=385.18 Aligned_cols=150 Identities=28% Similarity=0.479 Sum_probs=128.9
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccC
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKN 164 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~ 164 (336)
|||+|+|||++| |||||+||| |||||+|. ++||||||||+||.|+|.|+|+|||+|++++||||+ ||||+
T Consensus 1 P~l~I~EQPk~r~~RFRY~cEgrSaGsipG~~St~~~KT~Pti~i~nY~G~a~V~vslVT~d~p~rpHpH~----LVGK~ 76 (169)
T cd07885 1 PYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINNYTGPGRVRISLVTKDPPHKPHPHE----LVGKD 76 (169)
T ss_pred CcEEEEecCCcCcceEEecccCCCCCCCCcCcCCCCCCcCCeEEEecCcCCEEEEEEEEeCCCCCCCCcch----hcccc
Confidence 799999999999 999999999 99999986 568999999999999999999999999999999976 99998
Q ss_pred CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCc-----ch----hh---hcccCCeeeEEeEEE
Q psy11902 165 STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPED-----SS----AK---NKKRSTRCRMVFRTT 232 (336)
Q Consensus 165 ~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~-----~~----~~---~~~k~n~VRL~Fqv~ 232 (336)
|+ +|+|. +.|.| ++|+++|+||||||++|+||++.+.++ +. +. ...++|.||||||||
T Consensus 77 ---C~----~Gvc~--v~v~p-~~~~~~F~nLGIqcV~KKdv~e~L~~R~~~~~~pf~~~~~~~~~~iDLn~VRLcFqaf 146 (169)
T cd07885 77 ---CK----DGYYE--AELSP-DRCIHSFQNLGIQCVKKRDLEQAVSQRIQTNNNPFNVPIEEQRADYDLNAVRLCFQVT 146 (169)
T ss_pred ---cC----CcEEE--EEeCC-CCcEEEeccceeEEEEeccHHHHHHHHHHhcCCCCccchhHhhcccchhhEEEEEEEE
Confidence 97 89776 55558 579999999999999999997655322 11 11 223569999999999
Q ss_pred EecCCCCceEec-eeeeeeeecCC
Q psy11902 233 IIHPGTRETEVL-QVASHPIMCNQ 255 (336)
Q Consensus 233 i~~~g~g~~~~l-~V~S~PI~dsK 255 (336)
|++++ |++..| ||+|+||||++
T Consensus 147 l~d~~-G~~~~l~PVvS~pIyD~~ 169 (169)
T cd07885 147 VRDPS-GRLLPLPPVLSQPIYDNR 169 (169)
T ss_pred EECCC-CCEEeCCCeeccccccCC
Confidence 99984 556666 59999999986
No 6
>cd07933 RHD-n_c-Rel N-terminal sub-domain of the Rel homology domain (RHD) of c-Rel. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the c-Rel family of transcription factors, categorized as a class II member of the NF-kappa B family. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the ankyrin-repeat containing inhibitory protein I-kappa B
Probab=100.00 E-value=1e-54 Score=386.84 Aligned_cols=151 Identities=25% Similarity=0.451 Sum_probs=129.1
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccC
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKN 164 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~ 164 (336)
|||+|+|||++| |||||+||| |||||+|. ++||||||||+||.|+|+|+|+|||+|++++||||. ||||+
T Consensus 1 P~l~I~EQPkqrg~RFRY~CEgrSaGsipG~~St~~~KT~Ptv~i~nY~G~a~I~VslVT~d~P~rpHpH~----LVGK~ 76 (172)
T cd07933 1 PYVEIFEQPRQRGMRFRYKCEGRSAGSIPGERSTDNNRTYPSIQILNYTGKGKVRITLVTKNEPYKPHPHD----LVGKD 76 (172)
T ss_pred CcEEEEeCCCcccceEEEccCCCCCCCCCCCcCCCCCCcCCeEEEEcCcCCEEEEEEEEeCCCCCCCCccc----ccccc
Confidence 799999999999 999999999 99999986 578999999999999999999999999999999976 99999
Q ss_pred CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCc---------chhh-----hcccCCeeeEEeE
Q psy11902 165 STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPED---------SSAK-----NKKRSTRCRMVFR 230 (336)
Q Consensus 165 ~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~---------~~~~-----~~~k~n~VRL~Fq 230 (336)
|+ +|+|.+ .|.| ++|+++|+||||||++||||++.+.++ ...+ ...++|.||||||
T Consensus 77 ---C~----~G~c~~--~v~p-~~~~~~F~nLGIqcV~KK~v~e~L~~R~~~~~~pf~~~~~~~~~~~~iDLn~VRLCFq 146 (172)
T cd07933 77 ---CR----DGYYEA--EFGP-ERRVLAFQNLGIQCVRRREVKEAIMLRISRGINPFNVPEEQLLQIEEYDLNVVRLCFQ 146 (172)
T ss_pred ---CC----CceEEE--EECC-CCcEEEecccceEEEEhhhHHHHHHHHHHhcCCCCcchHhHhhhhhccccceEEEEEE
Confidence 97 897765 5558 479999999999999999997655322 1111 1245699999999
Q ss_pred EEEecCCCCceEec-eeeeeeeecCC
Q psy11902 231 TTIIHPGTRETEVL-QVASHPIMCNQ 255 (336)
Q Consensus 231 v~i~~~g~g~~~~l-~V~S~PI~dsK 255 (336)
|||+++++..+..| ||+|+||||+|
T Consensus 147 afl~d~~G~~t~~l~PVvS~pIyD~~ 172 (172)
T cd07933 147 IFLPDEHGNYTTALPPIVSNPIYDNR 172 (172)
T ss_pred EEEECCCCCCcccCCCccccccccCC
Confidence 99999844445666 59999999986
No 7
>cd07887 RHD-n_Dorsal_Dif N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Dorsal. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Dorsal and Dif (Dorsal-related immunity factor), and similar proteins. Dorsal and Dif are Rel-like transcription factors, which play roles in mediating innate immunity in Drosophila. They are activated via the Toll pathway. Cytoplasmic Dorsal/Dif are inactivated via forming a complex with Cactus, the Drosophila homologue of mammalian I-kappa B proteins. In response to signals, Cactus is degraded and Dorsal/Dif can be transported into the nucleus, where they act as transcription factors. Dorsal is also an essential gene in establishing the proper dorsal/ventral polarity in the developing embryo.
Probab=100.00 E-value=2e-54 Score=385.38 Aligned_cols=152 Identities=29% Similarity=0.474 Sum_probs=129.5
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccC
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKN 164 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~ 164 (336)
|||+|+|||++| |||||+||| |||||+|. ++||||||||+||.|+|+|+|+|||+|++++||||. ||||+
T Consensus 1 P~l~I~EQPk~rg~RFRY~cEGrSaGsipG~~S~~~~KT~PtVki~nY~G~a~I~vslVT~d~p~rpHpH~----LVGk~ 76 (173)
T cd07887 1 PYVRIVEQPTSRALRFRYECEGRSAGSIPGANSTSEGKTFPTIQVVNYDGRAVVVVSCVTKDEPFRPHPHN----LVGKE 76 (173)
T ss_pred CcEEEEecCCcccceEEecccCCCCCCCcCCcCCCCCCcCCeEEEecccCCEEEEEEEEeCCCCCCCCCcc----ccCcc
Confidence 799999999999 999999999 99999986 679999999999999999999999999999999976 99994
Q ss_pred CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCc-----c----hhh-----hcccCCeeeEEeE
Q psy11902 165 STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPED-----S----SAK-----NKKRSTRCRMVFR 230 (336)
Q Consensus 165 ~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~-----~----~~~-----~~~k~n~VRL~Fq 230 (336)
.|+ +|+|.++| .|+ +|+++|+||||||++|+||++.+.++ + ++. ...++|.||||||
T Consensus 77 --~C~----~Gvc~~~v--~p~-~~~~~F~nLGIqcvkKk~v~e~L~~R~~~~vdpf~~~~~~~~~~~~~dLn~VRLcFq 147 (173)
T cd07887 77 --GCK----KGVCTKKI--NPT-EMRIVFQKLGIQCVKKKDVEESLKLREEINVDPFRTGFDHKDQINSIDLNVVRLCFQ 147 (173)
T ss_pred --CCC----CCeEEEEe--CCC-CcEEEeccCceEEEEeccHHHHHHHHHHhcCCccccchhhhhhhhccccccEEEEEE
Confidence 397 89887555 484 89999999999999999997666432 1 111 1345699999999
Q ss_pred EEEecCCCCceEec-eeeeeeeecCC
Q psy11902 231 TTIIHPGTRETEVL-QVASHPIMCNQ 255 (336)
Q Consensus 231 v~i~~~g~g~~~~l-~V~S~PI~dsK 255 (336)
|||+++++..+..| ||+|+||||+|
T Consensus 148 afl~d~~G~~~~~l~PVvS~pIyd~K 173 (173)
T cd07887 148 VFLEDENGRFTVPLPPVVSDPIYDKK 173 (173)
T ss_pred EEEECCCCCCcccCCCcCccccccCC
Confidence 99999844445655 59999999997
No 8
>cd07934 RHD-n_NFkB2 N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor kappa B2 (NF-kappa B2). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NF-kappa B2 family of transcription factors, a class I member of the NF-kappa B family. In class I NF-kappa Bs, the RHD domain co-occurs with C-terminal ankyrin repeats. NF-kappa B2 is commonly referred to as p100 or p52 (proteolytically processed form). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is
Probab=100.00 E-value=2.2e-54 Score=388.64 Aligned_cols=152 Identities=30% Similarity=0.441 Sum_probs=127.3
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccC
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKN 164 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~ 164 (336)
|||+|+|||++| |||||+||| |||||+|. +.||||||||+||.|+|+|+|+|||+|++++||||. ||||+
T Consensus 1 P~l~I~EQPkqrg~RFRY~CEGrSaGsipG~~St~~~KT~PtV~i~nY~G~a~I~VslVT~d~p~rpHpH~----LVGK~ 76 (185)
T cd07934 1 PYLVIIEQPKQRGFRFRYVCEGPSHGGLPGASSEKGRKTYPTVKICNYVGMARIEVDLVTHTDPPRVHAHS----LVGKH 76 (185)
T ss_pred CcEEEEecCCccCceEEEeccCCCCCCCcCccCCCCCCcCCeEEEecCcCCEEEEEEEEeCCCCCCCCCee----ccCcc
Confidence 799999999999 999999999 99999986 479999999999999999999999999999999966 99999
Q ss_pred CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCc-----------chh------------h---h
Q psy11902 165 STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPED-----------SSA------------K---N 218 (336)
Q Consensus 165 ~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~-----------~~~------------~---~ 218 (336)
|.+ +|+|. |.|.| ++|+++|+||||||++|+||++.+.++ ..+ + .
T Consensus 77 ---c~~---~Gvc~--v~v~p-~~~~~~F~nLGIqcv~KK~v~~~L~~R~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 147 (185)
T cd07934 77 ---CNE---SGNCS--VDVGP-KDMTAQFSNLGILHVTKKNMMEILKEKLKRQKLRNTGPYKLTEAEERELEQEAKELKK 147 (185)
T ss_pred ---ccc---CceEE--EEECC-CccEEEecCcceEEEecccHHHHHHHHHHhhhhccCCCcccChHHHHHHHHHHHhhhh
Confidence 754 79776 45558 589999999999999999996444211 001 0 1
Q ss_pred cccCCeeeEEeEEEEecCCCCceEec-eeeeeeeecCC
Q psy11902 219 KKRSTRCRMVFRTTIIHPGTRETEVL-QVASHPIMCNQ 255 (336)
Q Consensus 219 ~~k~n~VRL~Fqv~i~~~g~g~~~~l-~V~S~PI~dsK 255 (336)
..++|.|||||||||+++++..+..| ||+|+||||+|
T Consensus 148 ~~DLn~VRLCFqafl~d~~G~~t~~l~PVvS~pIyD~K 185 (185)
T cd07934 148 VMDLSIVRLKFTAYLRDSNGSYTLALKPVISDPIHDSK 185 (185)
T ss_pred ccccccEEEEEEEEEECCCCCCccCCCCeEccCCccCC
Confidence 23469999999999999843445555 69999999997
No 9
>cd07883 RHD-n_NFkB N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa light polypeptide gene enhancer in B-cells (NF-kappa B). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NF-kappa B1 and B2 families of transcription factors, also referred to as class I members of the NF-kappa B family. In class I NF-kappa Bs, the RHD domain co-occurs with C-terminal ankyrin repeats. Family members include NF-kappa B1 and NF-kappa B2. NF-kappa B1 is commonly referred to as p105 or p50 (proteolytically processed form), while NF-kappa B2 is called p100 or p52 (proteolytically processed form). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large
Probab=100.00 E-value=2.6e-54 Score=391.39 Aligned_cols=151 Identities=30% Similarity=0.472 Sum_probs=127.4
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccC
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKN 164 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~ 164 (336)
|||+|+|||++| |||||+||| |||||+|. ++||||||||+||+|+|+|+|+|||+|++++||||. ||||+
T Consensus 1 P~l~I~EQPk~rg~RFRY~CEG~ShGsipG~~S~~~~KT~PtVki~nY~G~a~I~VslVT~d~p~rpHpH~----LVGK~ 76 (197)
T cd07883 1 PYLEILEQPKQRGFRFRYGCEGPSHGGLPGASSEKNKKSYPTVKICNYQGPARIVVQLVTNSEPPRLHAHS----LVGKH 76 (197)
T ss_pred CcEEEEeCCCccCceEEeccCCCCCCCCcCCcCCCCCCcCCeEEEecCcCCEEEEEEEEeCCCCCCCCCcc----ccCCC
Confidence 799999999999 999999999 99999986 478999999999999999999999999999999976 99998
Q ss_pred CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCc------------ch-----------------
Q psy11902 165 STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPED------------SS----------------- 215 (336)
Q Consensus 165 ~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~------------~~----------------- 215 (336)
|+ +|+|.++ |.|+ +|+++|+||||||++||||++.+.++ +.
T Consensus 77 ---C~----~Gvc~v~--v~p~-~~~~~F~nLGIqcV~KK~v~e~L~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 146 (197)
T cd07883 77 ---CE----DGICTVQ--VGPK-DMTAQFPNLGILHVTKKNVVETLEARLLAQCTRGYNPGDLVHVDAEGGGDRQLTDEE 146 (197)
T ss_pred ---CC----CCeEEEE--eCCC-CcEEEecCcceEEEecccHHHHHHHHHHhhhccccCcccccccccccccccccchHH
Confidence 98 7977755 5586 89999999999999999996544211 00
Q ss_pred -------hh---hcccCCeeeEEeEEEEecCCCCceEec-eeeeeeeecCC
Q psy11902 216 -------AK---NKKRSTRCRMVFRTTIIHPGTRETEVL-QVASHPIMCNQ 255 (336)
Q Consensus 216 -------~~---~~~k~n~VRL~Fqv~i~~~g~g~~~~l-~V~S~PI~dsK 255 (336)
++ ...++|.|||||||||+++++..+..| ||+|+||||+|
T Consensus 147 ~~~i~~ea~~~a~~~DLn~VRLcFqafl~d~~G~~t~~l~PVvS~pIyD~K 197 (197)
T cd07883 147 QAEIRQKAKQQAKSMDLSVVRLCFQAFLPDSNGSFTRPLKPVISDAIYDSK 197 (197)
T ss_pred HHHHHHHHHhhhhccccceEEEEEEEEEECCCCCCcccCCCcCccccccCC
Confidence 01 123469999999999999743445555 69999999997
No 10
>cd07886 RHD-n_RelB N-terminal sub-domain of the Rel homology domain (RHD) of the reticuloendotheliosis viral oncogene homolog B (RelB) protein. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the RelB family of transcription factors, categorized as class II NF-kappa B family members. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the anky
Probab=100.00 E-value=8.6e-54 Score=381.02 Aligned_cols=151 Identities=23% Similarity=0.348 Sum_probs=129.2
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeE--EEEEEeeCCCCCCCCcccccceecc
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPAT--LEVFIGTDQGKIAPHMFYQACRVAG 162 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~--i~V~lvT~d~~~~PH~f~qvhRLvG 162 (336)
|||+|+|||++| |||||+||| |||||+|. ++||||||||+||.|+|. |+|+|||+|++++||||. |||
T Consensus 1 P~l~I~EQPkqrg~RFRY~cEgrSaGsipG~~St~~~KTyPtV~i~ny~G~a~v~V~vslVT~d~p~rpHpH~----LVG 76 (172)
T cd07886 1 PRLLITEQPKQRGMRFRYECEGRSAGSILGESSTEANKTQPAIEIQNCIGLKEVTVTVCLVWKDPPHRVHPHG----LVG 76 (172)
T ss_pred CcEEEEecCCcccceEEEeccCCCCCCCcCccCCCCCCcCCeEEEecccCCceEEEEEEEeeCCCCCCCCCcc----ccc
Confidence 799999999999 999999999 99999986 568999999999999974 788999999999999976 999
Q ss_pred cCCCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCc-----chhh-------hcccCCeeeEEeE
Q psy11902 163 KNSTPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPED-----SSAK-------NKKRSTRCRMVFR 230 (336)
Q Consensus 163 K~~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~-----~~~~-------~~~k~n~VRL~Fq 230 (336)
|+ |. +|+|.++ +.|+.+|+++|+||||||++|+||++.+.++ +.+. ...++|.||||||
T Consensus 77 K~---C~----~Gvc~v~--v~p~~~~~~~F~nLGIqcv~KK~v~e~L~~R~~~~~dpf~~~~~~~~~~~DLn~VRLCFq 147 (172)
T cd07886 77 KD---CP----NGICQVT--LNPHSSPRHSFSNLGIQCVRKREIEAAIETRLQLNIDPFKAGSLKNHEEVDMNVVRLCFQ 147 (172)
T ss_pred cc---CC----CceEEEE--eCCCCccEEEEcCceeEeeehhhhHHHHHHHHHccCCcccccccccccccccccEEEEEE
Confidence 98 98 7977755 5598789999999999999999997655321 1111 1234699999999
Q ss_pred EEEecCCCCceEece-eeeeeeecCC
Q psy11902 231 TTIIHPGTRETEVLQ-VASHPIMCNQ 255 (336)
Q Consensus 231 v~i~~~g~g~~~~l~-V~S~PI~dsK 255 (336)
|||+++ +|++..|+ |+|+||||+|
T Consensus 148 afl~d~-~g~~~~l~PVvS~pIyD~K 172 (172)
T cd07886 148 ASYRDD-DGRKDCLSPVLSEPIYDKK 172 (172)
T ss_pred EEEECC-CCCEEeCCCeEccCcccCC
Confidence 999998 56777775 9999999997
No 11
>PF00554 RHD: Rel homology domain (RHD); InterPro: IPR011539 The Rel homology domain (RHD) is found in a family of eukaryotic transcription factors, which includes NF-kappaB, Dorsal, Relish, NFAT, among others. Some of these transcription factors appear to form multi-protein DNA-bound complexes []. Phosphorylation of the RHD appears to play a role in the regulation of some of these transcription factors, acting to modulate the expression of their target genes []. The RHD is composed of two immunoglobulin-like beta-barrel subdomains that grip the DNA in the major groove. The N-terminal specificity domain resembles the core domain of the p53 transcription factor, and contains a recognition loop that interacts with DNA bases; the C-terminal dimerisation domain contains the site for interaction with I-kappaB [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1A66_A 1NFA_A 2I9T_B 1LE9_F 1NFK_A 1OOA_B 1LE5_F 1VKX_B 1LEI_B 2V2T_B ....
Probab=100.00 E-value=9.4e-54 Score=379.80 Aligned_cols=148 Identities=35% Similarity=0.591 Sum_probs=115.0
Q ss_pred EEEeeCCccc-cccceeccC-CCCccCC----CCCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccCCC
Q psy11902 93 LEITSQPEQQ-HRARYQTEG-SRGAVKD----KSGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKNST 166 (336)
Q Consensus 93 L~I~eQP~~~-~RfRY~~EG-S~Gsi~g----~~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~~t 166 (336)
|+|+|||++| |||||+||| |||||+| .++||||+|||+||+|+|.|+|+|||+|++++||| |+||||+
T Consensus 1 l~I~eQP~~~~~RfRY~~Eg~S~Gsl~g~~s~~~~kt~PtVkl~ny~g~a~i~v~lvt~~~~~~pH~----H~Lvgk~-- 74 (169)
T PF00554_consen 1 LVITEQPKQRGFRFRYECEGGSHGSLPGESSTRSKKTFPTVKLLNYNGPARIRVSLVTKDDPPRPHP----HRLVGKD-- 74 (169)
T ss_dssp EEEEE-B-SSSB--EEGGCSSSSSBS-BTT-BSTSSSS-EEEEES-TSSEEEEEEEEESSSS-EB-S----SEEESTT--
T ss_pred CeEEECCccccceeEEecCCCCccccccccccCCCCCCCeEEEEecCCceEEEEEEEEcCCCcCCcc----eEeecCc--
Confidence 7999999999 999999995 9999999 57899999999999999999999999999999999 5699997
Q ss_pred cccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcchh-----------h---hcccCCeeeEEeEEE
Q psy11902 167 PCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSA-----------K---NKKRSTRCRMVFRTT 232 (336)
Q Consensus 167 ~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~~~-----------~---~~~k~n~VRL~Fqv~ 232 (336)
|. +|+ +++.|.|+ +|+++|+||||||+||+||++++.++... . ...++|+||||||||
T Consensus 75 -c~----~gv--~~v~v~p~-~~~~sF~nlGI~~vrkkdv~~~l~~R~~~~~~~~~~~~~~~~~~~~~dLn~VRLcFqa~ 146 (169)
T PF00554_consen 75 -CK----DGV--CEVEVGPE-DMTASFDNLGIQCVRKKDVEERLKKRIELNIDPKNIKFEAEKEAKDMDLNVVRLCFQAF 146 (169)
T ss_dssp -EE----TTE--EEEEEBST-TSEEE-SSEEEEE--TTTHHHHHHHHHHTTHHTTHHHHHHHCSHTTS-TTEEEEEEEEE
T ss_pred -cC----CCe--EEEEeCCC-cceEEecCcchhhhhhHhHHHHHHHhhhcCCchhhhhhHHhhhhccccccEEEEEEEEE
Confidence 98 894 55677797 99999999999999999998877532111 1 122469999999999
Q ss_pred EecC-CCCceEeceeeeeeeecC
Q psy11902 233 IIHP-GTRETEVLQVASHPIMCN 254 (336)
Q Consensus 233 i~~~-g~g~~~~l~V~S~PI~ds 254 (336)
|+++ |++...++||+|+|||||
T Consensus 147 l~d~~g~~~~~l~pV~S~pI~d~ 169 (169)
T PF00554_consen 147 LPDSNGNFTRPLPPVVSNPIYDS 169 (169)
T ss_dssp EECSTSSEEEEEEEEEEEEEEBT
T ss_pred EecCCCCcceecCCeecccCcCC
Confidence 9887 444556668999999997
No 12
>cd07935 RHD-n_NFkB1 N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa B1 (NF-kappa B1). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NF-kappa B1 family of transcription factors, a class I member of the NF-kappa B family. In class I NF-kappa Bs, the RHD domain co-occurs with C-terminal ankyrin repeats. NF-kappa B1 is commonly referred to as p105 or p50 (proteolytically processed form). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex
Probab=100.00 E-value=2.2e-53 Score=386.21 Aligned_cols=151 Identities=30% Similarity=0.448 Sum_probs=127.2
Q ss_pred eeEEEeeCCccc-cccceeccC-CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCCCCCCcccccceecccC
Q psy11902 91 VYLEITSQPEQQ-HRARYQTEG-SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGKIAPHMFYQACRVAGKN 164 (336)
Q Consensus 91 p~L~I~eQP~~~-~RfRY~~EG-S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~~~PH~f~qvhRLvGK~ 164 (336)
|||+|+|||++| |||||+||| |||||+|. +.||||||||+||+|+|+|+|+|||+|++++||||. ||||+
T Consensus 1 P~l~I~EQP~~r~~RFRY~cEg~s~GsipG~~S~~~~KT~Ptv~i~nY~G~a~I~VsLVT~d~p~rpHpH~----LVGK~ 76 (202)
T cd07935 1 PYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHS----LVGKH 76 (202)
T ss_pred CcEEEEecCCcccceEEEeccCCCCCCCcCccCCCCCCcCCeEEEecCcCCEEEEEEEEeCCCCCCCCCcc----ccccC
Confidence 799999999999 999999999 99999986 478999999999999999999999999999999966 99998
Q ss_pred CCcccccccCCeEEEEEecCCCCCceEEeeceeeEEEeccchhhhCCCcc------------------------------
Q psy11902 165 STPCLEKKTDGTVIIDIDFDPSKDMSVTCDCVGILKERNVDVEQRFPEDS------------------------------ 214 (336)
Q Consensus 165 ~t~C~E~~~dG~~viEv~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~------------------------------ 214 (336)
|+ +|+|.++ +.| ++|+++|+||||||++||||++.+.++.
T Consensus 77 ---C~----~Gvc~v~--v~p-~d~~~~F~NLGIqcV~KKdv~e~L~~R~~~~~~~~~~~~~~~~pe~~~~~~~~~~~r~ 146 (202)
T cd07935 77 ---CE----DGICTVT--AGP-KDMVVGFANLGILHVTKKKVFETLEARMTEACKKGYNPGLLVHPELAYLQAEGGGDRQ 146 (202)
T ss_pred ---CC----CceeEEE--eCC-CcceEEecCcceEEEecccHHHHHHHHHhhhhhcCCCccccccccccccccccccccc
Confidence 97 8977754 458 5899999999999999999965442110
Q ss_pred --h---------hh---hcccCCeeeEEeEEEEecCCCCceEec-eeeeeeeecCC
Q psy11902 215 --S---------AK---NKKRSTRCRMVFRTTIIHPGTRETEVL-QVASHPIMCNQ 255 (336)
Q Consensus 215 --~---------~~---~~~k~n~VRL~Fqv~i~~~g~g~~~~l-~V~S~PI~dsK 255 (336)
. +. ...++|.||||||||++++++..+..| ||+|+||||+|
T Consensus 147 lt~~e~~~i~~~a~~~~~~mDLN~VRLcFqafl~d~~G~~t~~l~PVvS~pIyD~K 202 (202)
T cd07935 147 LTEREKEIIRQAAVQQTKEMDLSVVRLMFTAFLPDSTGGFTRRLEPVVSDAIYDSK 202 (202)
T ss_pred cchHHHHHHHHHHHhhhhcccceeEEEEEEEEEECCCCCCcccCCCcCccccccCC
Confidence 0 00 123469999999999999843445555 69999999997
No 13
>cd07884 RHD-n_Relish N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Relish protein, in which the RHD domain co-occurs with C-terminal ankyrin repeats. Family members are sometimes referred to as p110 or p68 (proteolytically processed form). Relish is an NF-kappa B-like transcription factor, which plays a role in mediating innate immunity in Drosophila. It is activated via the Imd (immune deficiency) pathway, which triggers phosphorylation of Relish. IKK-dependent proteolytic cleavage of Relish (which involves Dredd) results in a smaller active form (without the C-terminal ankyrin repeats), which is transported into the nucleus and functions as a transactivator.
Probab=100.00 E-value=5.4e-53 Score=372.05 Aligned_cols=149 Identities=21% Similarity=0.356 Sum_probs=131.4
Q ss_pred eeEEEeeCCccccccceeccC--CCCccCCC----CCCCccEEEEecccCCeEEEEEEeeCCCC-CCCCcccccceeccc
Q psy11902 91 VYLEITSQPEQQHRARYQTEG--SRGAVKDK----SGNGFPVVKLVGYNGPATLEVFIGTDQGK-IAPHMFYQACRVAGK 163 (336)
Q Consensus 91 p~L~I~eQP~~~~RfRY~~EG--S~Gsi~g~----~~kt~PtVkL~gY~Gpa~i~V~lvT~d~~-~~PH~f~qvhRLvGK 163 (336)
|||+|+|||+++|||||+||| |||||+|. ++||||||||+||.|+|+|+|+|||+|++ ++||||. ||||
T Consensus 1 P~l~IvEQP~~~~RFRY~cEg~~SaGsipG~~St~~~KT~Ptv~i~ny~G~a~I~vslvT~d~p~~~pHpH~----LVgK 76 (159)
T cd07884 1 PFLRIVEQPVDKFRFRYKSEMHGTHGSLLGERSTSSKKTFPTVKLCNYRGQAVIRCSLYQADDNRRKPHVHK----LVGK 76 (159)
T ss_pred CcEEEEeCCcccceEEeecCCCCCcCCcCCCcCCCCCCcCCeEEEecCcCCEEEEEEEEECCCCCCCCCCcc----cccc
Confidence 799999999999999999997 99999985 57999999999999999999999999987 9999966 9999
Q ss_pred CCCcccccccCCeEEEEE-ecCCCCCceEEeeceeeEEEeccchhhhCCCcchhhhcccCCeeeEEeEEEEecCCCCce-
Q psy11902 164 NSTPCLEKKTDGTVIIDI-DFDPSKDMSVTCDCVGILKERNVDVEQRFPEDSSAKNKKRSTRCRMVFRTTIIHPGTRET- 241 (336)
Q Consensus 164 ~~t~C~E~~~dG~~viEv-~l~P~~~m~~sf~~lGIlkvrn~DVE~r~~e~~~~~~~~k~n~VRL~Fqv~i~~~g~g~~- 241 (336)
+ |. +|+|.+++ ++.|+.+|+++|+||||||++||||++.+.++ ...++|.||||||||+++++ |+.
T Consensus 77 ~---c~----~g~c~~~~~~~~pe~~~~~~F~nLGIqcv~Kk~v~~~L~~r----~~idLn~VRLcFqafl~~~~-G~~~ 144 (159)
T cd07884 77 Q---GD----DDVCDPHDIEVSPEGDYVAMFQNMGIIHTAKKNIPEELYKK----KNMNLNQVVLRFQAFAVSAN-GHLR 144 (159)
T ss_pred c---cc----CCCceeeccccCCCCccEEEeCCcceEEEEecchHHHHhhh----cccCcccEEEEEEEEEECCC-CCEe
Confidence 9 87 79887664 45678899999999999999999998887754 34567999999999999984 544
Q ss_pred Eec-eeeeeeeecCC
Q psy11902 242 EVL-QVASHPIMCNQ 255 (336)
Q Consensus 242 ~~l-~V~S~PI~dsK 255 (336)
..+ ||+|+||||+|
T Consensus 145 ~~l~PVvS~pI~d~K 159 (159)
T cd07884 145 PICPPVYSNPINNLK 159 (159)
T ss_pred cCCCCeEcccccCCC
Confidence 443 69999999987
No 14
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=99.81 E-value=1.5e-20 Score=156.10 Aligned_cols=58 Identities=57% Similarity=0.845 Sum_probs=54.6
Q ss_pred CCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCCceEEEEEeeCC-ccCeeEeEeCCccccCC
Q psy11902 259 VPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVAD-ICQWEESVLPDKEFLQQ 336 (336)
Q Consensus 259 ~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~DikVrF~E~~~~-~~~WEa~a~~dk~~~~~ 336 (336)
.|+|||+|++||+|+||+||| |||+||++||+|+|||+++| +.+||++|+||++.+||
T Consensus 1 lp~I~r~s~~s~sv~GG~Ev~--------------------Ll~~k~~kDikV~F~E~~~dG~~~WE~~a~f~~~~~hQ 59 (101)
T cd01178 1 LPEIEKKSLNSCSVNGGEELF--------------------LTGKNFLKDSKVVFQEKGQDGEAQWEAEATIDKEKSHQ 59 (101)
T ss_pred CCeeEEeccCceeecCCCEEE--------------------EEehhcCCCCEEEEEEeCCCCccceEEEEEeChHhcee
Confidence 478999999999999999999 99999999999999998764 78999999999999987
No 15
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=99.80 E-value=5.4e-20 Score=153.07 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=54.3
Q ss_pred CceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccC-CCceEEEEEeeCCccCeeEeEeCCccccCC
Q psy11902 260 PEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFL-KDTQVKFQKMVADICQWEESVLPDKEFLQQ 336 (336)
Q Consensus 260 l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~-~DikVrF~E~~~~~~~WEa~a~~dk~~~~~ 336 (336)
|+|||||++||||+||+||| ||||||+ +||+|||||+++++.+||++|+|+++.+|+
T Consensus 1 L~I~r~s~~sgsv~GG~Ev~--------------------LLcdKV~K~dI~VrF~e~~~~~~~We~~g~f~~~dVH~ 58 (102)
T cd01177 1 LKICRLDKTSGSVKGGDEVY--------------------LLCDKVQKEDIQVRFFEEDEEETVWEAFGDFSQTDVHR 58 (102)
T ss_pred CEEEEecCcccccCCCcEEE--------------------EEecccCCCCCEEEEEEcCCCCCceEEEeeECHHHccc
Confidence 78999999999999999999 9999999 699999999988889999999999999983
No 16
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=99.68 E-value=2.5e-17 Score=136.48 Aligned_cols=57 Identities=32% Similarity=0.444 Sum_probs=54.0
Q ss_pred CceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCC-CceEEEEEeeCCccCeeEeEeCCccccCC
Q psy11902 260 PEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLK-DTQVKFQKMVADICQWEESVLPDKEFLQQ 336 (336)
Q Consensus 260 l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~-DikVrF~E~~~~~~~WEa~a~~dk~~~~~ 336 (336)
|+|||+|++||+|.||+||| |||+||++ ||||+|+|+++|+.+||++|+|+++.++|
T Consensus 1 l~I~r~s~~s~~~~GG~ev~--------------------Ll~~k~~k~dikV~F~e~~~g~~~WE~~~~f~~~dv~q 58 (101)
T cd00602 1 LPICRVSSLSGSVNGGDEVF--------------------LLCDKVNKPDIKVWFGEKGPGETVWEAEAMFRQEDVRQ 58 (101)
T ss_pred CceEEEeCCeeEcCCCcEEE--------------------EEecCCCCCCCEEEEEecCCCCCeEEEEEEECHHHceE
Confidence 68999999999999999999 99999995 99999999988999999999999998765
No 17
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=95.92 E-value=0.0074 Score=49.65 Aligned_cols=43 Identities=40% Similarity=0.562 Sum_probs=37.2
Q ss_pred CceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCCceEEEEEeeCCccCeeEe
Q psy11902 260 PEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQKMVADICQWEES 326 (336)
Q Consensus 260 l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~DikVrF~E~~~~~~~WEa~ 326 (336)
|.|.++.-+.|+.+||.||. |+|+||-++.+|.|=.. ..|-..
T Consensus 1 P~I~ai~P~eG~~tGGt~Vt--------------------I~GenF~~gl~V~FG~~----~~w~e~ 43 (85)
T cd01175 1 PCIKAISPSEGWTTGGATVI--------------------IIGDNFFDGLQVVFGTM----LVWSEL 43 (85)
T ss_pred CcccEecCCCCcccCCeEEE--------------------EECCCCCCCcEEEECCE----eEEEEE
Confidence 56899999999999999999 99999999999999653 356643
No 18
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=94.76 E-value=0.036 Score=42.14 Aligned_cols=35 Identities=43% Similarity=0.610 Sum_probs=32.0
Q ss_pred CceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCC--ceEEEE
Q psy11902 260 PEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKD--TQVKFQ 314 (336)
Q Consensus 260 l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~D--ikVrF~ 314 (336)
|+|.+++..+|+..||.+|. |.|++|..+ ++|.|.
T Consensus 1 P~I~~i~P~~g~~~GGt~it--------------------I~G~~f~~~~~~~v~~~ 37 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVT--------------------ITGSNFGSGSNLRVTFG 37 (89)
T ss_pred CEEeEEECCcCCCCCCeEEE--------------------EEEECCCCCCcEEEEEe
Confidence 57999999999999999999 999999865 999995
No 19
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=94.29 E-value=0.074 Score=41.17 Aligned_cols=37 Identities=38% Similarity=0.446 Sum_probs=32.7
Q ss_pred CCceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCCCceEEEEE
Q psy11902 259 VPEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLKDTQVKFQK 315 (336)
Q Consensus 259 ~l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~DikVrF~E 315 (336)
+|+|.+++..+|+..||.+|. |.|+||.....|.|..
T Consensus 1 ~P~I~~i~P~~g~~~GGt~it--------------------i~G~nf~~~~~~~~~~ 37 (90)
T smart00429 1 DPVITRISPTSGPVSGGTEIT--------------------LCGKNLDSISVVFVEV 37 (90)
T ss_pred CCEEEEEccCcCcCCCCeEEE--------------------EeeecCCcceEEEEEE
Confidence 588999999999999999999 9999998877776664
No 20
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=85.66 E-value=1.2 Score=34.56 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=30.2
Q ss_pred CceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeeccCC---CceEEE
Q psy11902 260 PEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNFLK---DTQVKF 313 (336)
Q Consensus 260 l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv~~---DikVrF 313 (336)
|+|..++-.+|+..||..|- |.|++|.. +++|.|
T Consensus 1 P~I~~i~P~~g~~~Ggt~vt--------------------I~G~~f~~~~~~~~V~i 37 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLT--------------------ITGSNLGSGSPRVRVTV 37 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEE--------------------EEEECCCCCCceEEEEE
Confidence 67999999999999999999 99999884 488877
No 21
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=83.63 E-value=1.6 Score=32.42 Aligned_cols=36 Identities=33% Similarity=0.497 Sum_probs=31.0
Q ss_pred CceeecCCCccccCCCceeeeecCcccccccccCCCCCcceEeecc---CCCceEEEEE
Q psy11902 260 PEICKKSLTSCPVTGGAELFKVSPTDTIAGKGLLQDHPDAILGKNF---LKDTQVKFQK 315 (336)
Q Consensus 260 l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~~~~~~~~~~~~LLc~kv---~~DikVrF~E 315 (336)
|.|..++..+++..||.+|. |.|.+| ..+++|+|-.
T Consensus 1 P~I~si~P~~~~~~gg~~It--------------------I~G~~f~~~~~~~~v~i~~ 39 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNIT--------------------ITGSNFGSNSSNISVKIGG 39 (85)
T ss_dssp SEEEEEESSEEETTCTSEEE--------------------EEEESSESSSTTEEEEETT
T ss_pred CEEEEEECCeEecCCCEEEE--------------------EEEEeecccCCceEEEECC
Confidence 56888999999999999999 999999 4777888754
No 22
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=77.44 E-value=3.4 Score=32.41 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=18.6
Q ss_pred CceeecCCCccccCCCceee
Q psy11902 260 PEICKKSLTSCPVTGGAELF 279 (336)
Q Consensus 260 l~I~R~S~~Sgsv~GGeEv~ 279 (336)
|.|..++-..||..||..|-
T Consensus 1 P~I~~i~P~~Gp~~GGT~vt 20 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLT 20 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEE
Confidence 57899999999999999999
No 23
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=74.55 E-value=4.4 Score=32.60 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.9
Q ss_pred CceeecCCCccccCCCceee
Q psy11902 260 PEICKKSLTSCPVTGGAELF 279 (336)
Q Consensus 260 l~I~R~S~~Sgsv~GGeEv~ 279 (336)
|+|..++-..|+..||..|-
T Consensus 1 P~I~~i~P~~Gp~~GGT~vT 20 (94)
T cd01180 1 PVITEFFPLSGPLEGGTRLT 20 (94)
T ss_pred CeeEEEeCCCCCCCCCEEEE
Confidence 57999999999999999999
No 24
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=24.99 E-value=91 Score=25.57 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred CceeecCCCccccCCCceeeeecCccccc
Q psy11902 260 PEICKKSLTSCPVTGGAELFKVSPTDTIA 288 (336)
Q Consensus 260 l~I~R~S~~Sgsv~GGeEv~~~~~~~~~~ 288 (336)
|.|.+++-..|+.+||--|- |.-+.|+.
T Consensus 1 P~I~~i~P~~g~~SGGt~it-V~G~~Lds 28 (99)
T cd01181 1 PTITRIEPEWSFLSGGTPIT-VTGTNLNT 28 (99)
T ss_pred CEEEEeccCCCccCCCEEEE-EEeeccCc
Confidence 56889999999999999988 33333333
Done!